LOCUS       DANLRW010000001        54479 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.001, whole genome shotgun sequence.
ACCESSION   DANLRW010000001 DANLRW010000000
VERSION     DANLRW010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 54479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 54479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..54479
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.001"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(19..94)
                     /locus_tag="PXA71_000001"
     tRNA            complement(19..94)
                     /locus_tag="PXA71_000001"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(59..61),aa:Phe,seq:gaa)
     gene            complement(265..340)
                     /locus_tag="PXA71_000002"
     tRNA            complement(265..340)
                     /locus_tag="PXA71_000002"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(305..307),aa:Asn,seq:gtt)
     gene            complement(346..421)
                     /locus_tag="PXA71_000003"
     tRNA            complement(346..421)
                     /locus_tag="PXA71_000003"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(386..388),aa:Phe,seq:gaa)
     gene            complement(553..1644)
                     /gene="mltC"
                     /locus_tag="PXA71_000004"
     CDS             complement(553..1644)
                     /gene="mltC"
                     /locus_tag="PXA71_000004"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HDL5104163.1"
                     /translation="MKKYAKYLPMLAIIPFLIACGSNKSTKKPKSTRVDYSKDTNGLD
                     ILAGQFSHNIDDIWGSNELLVASKKDYVKYTDKFYTRSHISFEEGVITIETLGNQNHL
                     RNSIIHTLLMGRDPKGIDLFASGDAPISSNPFLNGQVEDQFGRNITNVAIANDFATYL
                     LQNKVQTRRLKNGQTVSFVTIKMVAGHIEVRARQYLPLVRKMAKQYGIEPSLILGIME
                     VESAFNPYAISYANAIGLMQVVPRTAGRDIFARKGMGGQPSREYLYNPSNNIDAGTLY
                     LTILRDEYLDGIEDPVAKRYAMISAYNSGAGAVLRVFDSDRYSAIDRINDLSSDAVYR
                     ILTTAHPSSQARNYLRKVTTAREKYRNIR"
     gene            complement(1661..1930)
                     /locus_tag="PXA71_000005"
     CDS             complement(1661..1930)
                     /locus_tag="PXA71_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HDL5104164.1"
                     /translation="MARTVFCEYLKQEAEGLDFQLYPGELGKRIFDSISKQAWSEWIK
                     KQTMIVNEKKLSMMNPEHRKLLEQEMVNFLFEGKEIIIEGYKPVE"
     gene            complement(1934..3079)
                     /gene="mutY"
                     /locus_tag="PXA71_000006"
     CDS             complement(1934..3079)
                     /gene="mutY"
                     /locus_tag="PXA71_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDL5104165.1"
                     /translation="MNSNSPFPLAKAKASDPFAKAVLAWFEQYGRKHLPWQQNKTLYQ
                     VWLSEVMLQQTQVATVIPYFARFMERFPTVIDLANASIDEVLHLWTGLGYYARARNLH
                     KAAIQIRDEFGGEFPTRFDDVLALTGVGRSTAGAILSSVLDAPHPILDGNVKRVLSRY
                     FAVEGWAGEKAVENRLWQLSESVTPDTQVADFNQAMMDLGAMICTRTKPKCLLCPLQE
                     NCKTNAMQAWDSFPAKKPKKTLPERQTYFLVLKSGSKVLLQKREAKGIWGGLFVFPQF
                     ESLEALKRSDFMQNLQISQQLTAFRHTFSHFHLDITPVLVETDLKKTSENSPLVVEEK
                     AGNYLSKVSSNADYWYDLHQHNEVGLATPVKRILDELAFSVKNEIKD"
     gene            3163..3555
                     /locus_tag="PXA71_000007"
     CDS             3163..3555
                     /locus_tag="PXA71_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5104166.1"
                     /translation="MKSPILGFHHIALIVSDYEKSKHFYTRILGAEIIAETYREQRAS
                     YKLDLRFKDGSQIELFSFPETPPRFTSPETCGLRHLAFRVENIEYAIAFLEQHQLPHE
                     GIRIDEITGKRFTFFRDPDDLPLEFYEV"
     gene            3556..4425
                     /locus_tag="PXA71_000008"
     CDS             3556..4425
                     /locus_tag="PXA71_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5104167.1"
                     /translation="MLYLLIATLIWASSFIVGKVAISAFDPVQIMQIRLTLAAFIALP
                     FFIPAYKKIQKNQHIKVWLISFLTFPLYVILQFSGLKLTSAASAVALLGLNPLLTVLV
                     GYFCFKKQATRLDFILSLFACLGILIMASGSDDSGSINVLGLLLVTLGSLSFIVGMYL
                     SKEILQSVKVIDLTKIMLVQGAITALPITLLFAENWQLPTSLSAWASVAYLGIICTSL
                     AILLWNKGISQSSPILAGILLALEPVFGLLMALVFLSEQLSLVTWVGIIIVICTALLS
                     VLLPMMKRYKRLI"
     gene            4441..5154
                     /gene="sfsA"
                     /locus_tag="PXA71_000009"
     CDS             4441..5154
                     /gene="sfsA"
                     /locus_tag="PXA71_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HDL5104168.1"
                     /translation="MKFPPLSHGILLRRYKRFLADIQLPNGEQITLHCPNTGAMTGCA
                     NPGDTVWFSTSHNPKRKYAHTWELTQTQAGDFICVNTLRANQLVQEALENQWISELAD
                     YQHILPEQKYGSENSRIDFLLKSDLLPDCFVEVKSTTLLTENGVGMFPDAKTERGQKH
                     LRELTKIAEQGLQAVIFFAILHTGIERFEVAKQIDPKYAELFAQAIAQKVQVLSYKMA
                     ISLENGQPIAATLTKKCEF"
     gene            5215..5736
                     /gene="hslV"
                     /locus_tag="PXA71_000010"
     CDS             5215..5736
                     /gene="hslV"
                     /locus_tag="PXA71_000010"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDL5104169.1"
                     /translation="MTTIVCVRKDGKVAIGGDGQATLGNCIEKGTVRKVRRLYKDKVV
                     TGFAGSTADAFILRDLFEKKLELHQGHLVKSAVELAKEWRTERALRRLEAMMIVANDS
                     EFLLVSGSGDVIEPEQDVLAIGSGGNYAKAAALALLRTENNLSAKEIVAEALKIAGDI
                     DIYSNYNHVIEEV"
     gene            5993..7318
                     /gene="hslU"
                     /locus_tag="PXA71_000011"
     CDS             5993..7318
                     /gene="hslU"
                     /locus_tag="PXA71_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HDL5104170.1"
                     /translation="MMSMTPREIVSELDAHIIGQKDAKRAVAIALRNRWRRMQLPEDL
                     RQEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LADVSMKLVRQQAVEKNKMRAQDAAEDRILDVLLPPAKDQWGNVQESDNNSTRQTFRK
                     KLREGQLDDKEIEIDVAAQVSVEIMTPPGMEEMTSQLQSLFEGMSPSKTKKRKMKIKD
                     ALKVMLDEEAAKLVNPEELKQQAIEAVEQHGIVFIDEIDKICKKGEHSGGDVSREGVQ
                     RDLLPIIEGSTVNTKHGMVKTDHILFICSGAFQVARPSDLLPELQGRLPIRVELKSLT
                     KEDFERILTEPNASLTLQYRELMKTEGVEIEFTKDGISRIAESAFRVNEKTENIGARR
                     LHTVLERLMDGISFDASERRGEKIIIDENYVSEALNDVVENEDLSRFIL"
     gene            7394..8272
                     /locus_tag="PXA71_000012"
     CDS             7394..8272
                     /locus_tag="PXA71_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HDL5104171.1"
                     /translation="MKNLYKWPAAQSLYPNQGKKSYAGKRFRYRLRSWLHHSKIKQFE
                     QFVTQNPQLIPLLNARPNYSYPVAHRFLDKRFSAKQRLQKITDNLLFLPQKLAHLPPL
                     WEQAVNFGEIIADFELWLNINEHQPMEGFWALELRHRPTNQLVYLLTFGKLDEALLIA
                     VIQGPNFEGSKELVKQLTKSCHGLRPAYLMVETMKALTAVLGYQSLLGIPQKYQNKSR
                     WVQSKRYVVDYDAIFAESGGKPGNYWQLPLELESKKIDEIPSKKRSMYRKRYEMLANL
                     KQTMELMLKTYTGLNG"
     gene            complement(8342..9058)
                     /locus_tag="PXA71_000013"
     CDS             complement(8342..9058)
                     /locus_tag="PXA71_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5104172.1"
                     /translation="MKKTLLTLLFGCVVTAQAQDIKFVMEPSYPPFEMTEEKGEIIGF
                     DVDIANAICKEMNANCTFHSQPFDSLIQSLKQKQFDAAISGMGITEPRKKQVLFSEPY
                     FPSSAAFIAKKDTDFAKVKTIGVQNGTTYQHYLAKEKKEYNVKSYASYQNAILDVQNG
                     RIDAIFGDVPVLAEMARKHEGLDFVGEKINNPNYFGDGLGIATHLKNQVLVDQFNAAL
                     KTIKENGEYQKIYDKWMGGK"
     gene            9465..9968
                     /locus_tag="PXA71_000014"
     CDS             9465..9968
                     /locus_tag="PXA71_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-activating lysine-acyltransferase"
                     /protein_id="HDL5104173.1"
                     /translation="MNQSYFNLLGNITWLWMNSSLHKEWSCELLARNVIPAIENEQYM
                     LLIDNGIPIAYCSWADLNLETEVKYIKDINSLTPEEWQSGDRRWIIDWVAPFGHSQLL
                     YKKMCQKYPDMIVRSIRFYPKQKELGKIAYFKGGKLDKKTAKKRFDTYQEELATALKN
                     EFNFIKK"
     gene            9984..12845
                     /locus_tag="PXA71_000015"
     CDS             9984..12845
                     /locus_tag="PXA71_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RTX family hemolysin"
                     /protein_id="HDL5104174.1"
                     /translation="MGTRLTTLSNGLKNTLTATKSGLHKAGQSLTQAGSSLKTGAKKI
                     ILYIPQNYQYDTEQGNGLQDLVKAAEELGIEVQREERNNIATAQTSLGTIQTAIGLTE
                     RGIVLSAPQIDKLLQKTKAGQALGSAESIVQNANKAKTVLSGIQSILGSVLAGMDLDE
                     ALQNNSNQHALAKAGLELTNSLIENIANSVKTLDEFGEQISQFGSKLQNIKGLGTLGD
                     KLKNIGGLDKAGLGLDVISGLLSGATAALVLADKNASTAKKVGAGFELANQVVGNITK
                     AVSSYILAQRVAAGLSSTGPVAALIASTVSLAISPLAFAGIADKFNHAKSLESYAERF
                     KKLGYDGDNLLAEYQRGTGTIDASVTAINTALAAIAGGVSAAAAGSVIASPIALLVSG
                     ITGVISTILQYSKQAMFEHVANKIHNKIVEWEKNNHGKNYFENGYDARYLANLQDNMK
                     FLLNLNKELQAERVIAITQQQWDNNIGDLAGISRLGEKVLSGKAYVDAFEEGKHIKAD
                     KLVQLDSANGIIDVSNSGKAKTQHILFRTPLLTPGTEHRERVQTGKYEYITKLNINRV
                     DSWKITDGAASSTFDLTNVVQRIGIELDNAGNVTKTKETKIIAKLGEGDDNVFVGSGT
                     TEIDGGEGYDRVHYSRGNYGALTIDATKETEQGSYTVNRFVETGKALHEVTSTHTALV
                     GNREEKIEYRHSNNQHHAGYYTKDTLKAVEEIIGTSHNDIFKGSKFNDAFNGGDGVDT
                     IDGNDGNDRLFGGKGDDILDGGNGDDFIDGGKGNDLLHGGKGDDIFVHRKGDGNDIIT
                     DSDGNDKLSFSDSNLKDLTFEKVKHNLVITNSKKEKVTIQNWFREADFAKEVPNYKAT
                     KDEKIEEIIGQNGERITSKQVDDLIAKGNGKITQDELSKVVDNYELLKHSKNVTNSLD
                     KLISSVSAFTSSNDSRNVLVAPTSMLDQSLSSLQFARAA"
     gene            12920..15046
                     /locus_tag="PXA71_000016"
     CDS             12920..15046
                     /locus_tag="PXA71_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_063101322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I secretion system permease/ATPase"
                     /protein_id="HDL5104175.1"
                     /translation="MEANHQRNDLGLVALTMLAQYHNISLNPEEIKHKFDLDGKGLSL
                     TAWLLAAKSLALKAKHIKKEISRLHLVNLPALVWQDNGKHFLLVKVDTDNNRYLTYNL
                     EQDAPQILSQDEFEACYQGQLILVTSRASVVGQLAKFDFTWFIPAVIKYRKIFLETLI
                     VSIFLQIFALITPLFFQVVMDKVLVHRGFSTLNIITVALAIVIIFEIVLSGLRTYVFS
                     HSTSRIDVELGAKLFRHLLSLPISYFENRRVGDTVARVRELDQIRNFLTGQALTSVLD
                     LLFSFIFFAVMWYYSPKLTLVILGSLPCYILWSIFISPILRRRLDEKFARSADNQAFL
                     VESVTAINMIKAMAVAPQMTDTWDKQLASYVSSSFRVTVLATIGQQGVQLIQKTVMVI
                     NLWLGAHLVISGDLSIGQLIAFNMLSGQVIAPVIRLAQLWQDFQQVGISVTRLGDVLN
                     SPTEQYQGKLSLPEIKGDISFKNIRFRYKPDAPTILNNVNLEIRQGEVIGIVGRSGSG
                     KSTLTKLLQRFYIPENGQVLIDGHDLALADPNWLRRQIGVVLQDNVLLNRSIRENIAL
                     SDPGMPMERVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN
                     PKILIFDEATSALDYESEHIIMQNMQKICQGRTVILIAHRLSTVKNADRIIVMEKGEI
                     VEQGKHHELLQNSNGLYSYLHQLQLN"
     gene            15058..16494
                     /locus_tag="PXA71_000017"
     CDS             15058..16494
                     /locus_tag="PXA71_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_140441352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family type I secretion periplasmic adaptor
                     subunit"
                     /protein_id="HDL5104176.1"
                     /translation="MKIWLSGIYEFFLRYKNIWAEVWKIRKELDHPNRKKDESEFLPA
                     HLELIETPVSKKPRLIAYLIMLFLVVAIVLASVSKVEIVATAPGKLTFSGRSKEIKPI
                     ENAIVQEIFVKDGQFVEKGQLLVSLTALGSDADIKKTMASLSLAKLENYRYQTLLTAI
                     EKESLPVIDLSRTEFKDSSEEDRLRIKHLIEEQYTTWQKQKTQKTLAYKRKEAEKQTI
                     FAYVRKYEGATRIEQEKLKDFKALYKQKSLSKHELLAQENKLIEAQNELAVYRSKLNE
                     LENDLLNVKEELELITQFFKSDVLEKLKQHIENERQLRLELEKNNQRRQASMIRAPVS
                     GTVQQLKIHTIGGVVTTAETLMIIVPEDDVLEATALVPNKDIGFVAAGQEVIIKVETF
                     PYTRYGYLTGRIKHISPDAIEQPNVGLVFNATIAIDRKNLTSPDGRKIDLSSGMTITA
                     EIKTGERSVMSYLLSPLEESVTESLRER"
     gene            16735..17733
                     /locus_tag="PXA71_000018"
                     /pseudo
     CDS             16735..17733
                     /locus_tag="PXA71_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250818.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            17750..18493
                     /locus_tag="PXA71_000019"
     CDS             17750..18493
                     /locus_tag="PXA71_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5104177.1"
                     /translation="MKQKYIYGLAGLLLLLLGWQLGTALLSQRLPMASMLAPAKTWES
                     FTWLISSGEIFPHLWASLQRIAVGLLAALVIGVPLGLLLGFSKHLEMLCTPSFQLLRM
                     ISPLSWMPIIVMLLGVGDLPIYFLLAFATVWSLIISTTSGVKSIDPQWLQLGRVMSAT
                     RKELLCKIVVPAITGHVLTGLRVAVGIAWVVLVPCEMLGVNQGLGYFILDTRDRLAYS
                     ELMAVIIIIGLIGWALDSLIRLALAKGGR"
     gene            18648..19706
                     /locus_tag="PXA71_000020"
     CDS             18648..19706
                     /locus_tag="PXA71_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDL5104178.1"
                     /translation="MSVLSSSFIQWLQQNAENLDQSNERADLLIPQIAALGLYKIGVP
                     ETLGGSGGTLVDAIKAVTELGNHSLAAAFVSWGHRTFIEHIIASKNPIPRQSYLADLL
                     NGNLTAGTGLSNAMKFLSGIEELNVNIREENGKRYLNGRLPWVTNLRSYRFVASFVAG
                     FQDERKPLVIAIPSTAKGLTRTKELEFIALQGTNTTSLVFENVELQDEWILADDAPEF
                     LAATRPAFLGLQFGLPFGLVERSLAEIEKSLPFRAILASEWQAQVDALNDIKTRLFNG
                     LNEEGYFVRNPKELFQARIDIVNVVAQTILLELQASGGRGYLKNDTSGFSRRWKEAAF
                     LPVVTPSAVQLRMVLANS"
     gene            complement(19827..20369)
                     /locus_tag="PXA71_000021"
     CDS             complement(19827..20369)
                     /locus_tag="PXA71_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL5104179.1"
                     /translation="MSQFQIHTIESAPETAQEALKAVQQANGFIPNLIGVLANAPTAL
                     ETYRTVGGINSRNSLTAEEREVVQITAAVVNGCGFCVAGHTKIALKALKMPEEVVNAL
                     RATARIDDNKLDTLARFTLAVMLQKAKLTEAQLNEFFAAGYNQQNAIDVILGVSLATL
                     CNYVNNIAEIPINPELQPFA"
     gene            complement(20521..22032)
                     /gene="glpK"
                     /locus_tag="PXA71_000022"
     CDS             complement(20521..22032)
                     /gene="glpK"
                     /locus_tag="PXA71_000022"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HDL5104180.1"
                     /translation="MEKQYIIALDQGTTSSRAVLLDKNANVVEVAQREFTQIYPQAGW
                     VEHNPMEIWSSQSSTLNEVVAKAGIKPDSIAAIGITNQRETTIVWEKETGKPVYNAIV
                     WQCRRTSDITDKLKADGHEEYIRKTTGLVVDPYFSGTKVKWILDNVEGAREKAERGEL
                     LFGTVDTWLVWKLTQGRVHVTDYTNASRTMLFNIHTKQWDDKMLELLNIPRSMLPEVK
                     NSSEVYGQTNIGGQGGVRIPVAGIAGDQQAALYGHLCVKEGQAKNTYGTGCFMLMHTG
                     NTAIQSENGLLTTIACNAKGEPEYALEGSVFIAGASIQWLRDELKIVHDSFDSEYFAT
                     KEDDSNGVYVVPAFTGLGAPYWDPYARGSIFGLTRGANRNHIVRATLESIAYQTRDVL
                     EAMQSDSKAKLQALRVDGGATANNFLMQFQADILDTKVERPKVKEVTALGAAYLAGIA
                     VGFWKDLEELKDKAEIERTFTPDGDQEKRAKRYKGWKKAVRRSLEWAKEDAEE"
     gene            complement(22036..22821)
                     /locus_tag="PXA71_000023"
     CDS             complement(22036..22821)
                     /locus_tag="PXA71_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HDL5104181.1"
                     /translation="MSKSLRNACIGEFIGTGFILFFGAGCVAAAQVAGANFGLWEISI
                     VWGLGVSMAIYISAGISGAHLNPAVTIALAAFYGFEKHKILPYVIAQVAGAFCSVALI
                     YFMYSDLFTAAEAAQGITRGETVGFAGVFSTYPNPNITLVTAFIVEFVITVVLMSTIL
                     AIGDDKNGLPNKALAALLIGLLIAVIGGATGPLTGFAMNPARDFGPKLFAYLAGWGEI
                     ALTGGKEIPYFIIPIVAPICGALFGAWGYKNLIHNNLPANTQE"
     gene            23034..23393
                     /locus_tag="PXA71_000024"
     CDS             23034..23393
                     /locus_tag="PXA71_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CrcB family protein"
                     /protein_id="HDL5104182.1"
                     /translation="MISIGAVLGAMCRWQLAVWLNPILSQFAFGTLAANWLGCLLIGI
                     AMGFNLGESQRLLFISGFLGSFTTFSSFSLELTEKLLAEKWGQFVTVLSLHLIGGLLL
                     TLIGVMLARAVTSGRFC"
     gene            complement(23441..24763)
                     /locus_tag="PXA71_000025"
     CDS             complement(23441..24763)
                     /locus_tag="PXA71_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5104183.1"
                     /translation="MSAMFIIQFAIVLLCILVGARVGGIGLGVFGGLGLAILSFGFGL
                     KPAGLPIDVMFMIMAVVSAAAAMQAAGGLDYMIKIATRILRKNPKYITFIAPLVTWTF
                     TVLAGTGHVAYSVLPVIAEVSRHNGIRPERPLSMAVIASQFAIVASPIAAAVVAVVAF
                     LEPQGVTLGNVLSVTIPATLLGLGLACVFVNKMGKELKDDPNYQRLLQDPEYVKENHI
                     TTNPTELPLKPTAKLSVGLFLFGALLVVLMGAIPALRPVFDGKPMGMAHTIEIVMLSI
                     GALIIFFCKPDGNEITKGSVFHAGMRAVIAIFGIAWLGDTLMQGHMDEVKSMVSGLVE
                     TAPWAFAFALFVLSVLVNSQGATVATLFPVAIAIGIPAPVLIGVFVAVNGYFFIPNYG
                     PIIASIDFDTTGTTRIGKYIFNHSFMLPGLLSMIFSIGFGLLLSNILL"
     gene            24912..25736
                     /gene="dapF"
                     /locus_tag="PXA71_000026"
     CDS             24912..25736
                     /gene="dapF"
                     /locus_tag="PXA71_000026"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HDL5104184.1"
                     /translation="MQFSKMHGLGNDFMVVDGVTQNVYLTEEMIRTLSDRHRGIGFDQ
                     LLLVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVTLKGLTNKKDIHVSTAKG
                     KMVLSLQEDGKVRVNMGEPIWEPSQVPFTANKFEKNYILRTELQTVLCGVVSMGNPHC
                     VLQVDDVKTAPVNELGPLLESHERFPERANISFMQVVNRNHVKLRVYERGAGETQACG
                     SGACGTVAVGIMQGLLDNKVQVDLPGGTLIIEWQGVGHPLYMTGDATHIYDGFIKL"
     gene            complement(25907..26449)
                     /locus_tag="PXA71_000027"
     CDS             complement(25907..26449)
                     /locus_tag="PXA71_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HDL5104185.1"
                     /translation="MAQVYIVHGYTANADKHWFPWLEQELAKCGVSCERLNMPDSAKP
                     SLDGWLNHLAQNVELTDQTVFVGHSLGCIAILNFLAKNYAKIKGAVFVSGFYQPVENL
                     PELSAFTNYYAILPSVSSFPSYVVSALDDKVVNHQYSDALAQHLHADYIRLNQGGHFL
                     DREGVTELPVVLELVKKLLE"
     gene            26573..26896
                     /locus_tag="PXA71_000028"
     CDS             26573..26896
                     /locus_tag="PXA71_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QacE family quaternary ammonium compound efflux
                     SMR transporter"
                     /protein_id="HDL5104186.1"
                     /translation="MNVWILLAISICLEIAATNLLKLSNGFTKAIPTIGSLALYGLSF
                     YFLSIIFRTLPVGIVYAIWSGVGIVLTALVAYFAFGQKIDLAGLIGISLIIAGVLVIN
                     LFSKV"
     gene            complement(26959..28404)
                     /gene="xylB"
                     /locus_tag="PXA71_000029"
     CDS             complement(26959..28404)
                     /gene="xylB"
                     /locus_tag="PXA71_000029"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HDL5104187.1"
                     /translation="MYIGIDLGTSGVKVVLLDENQHIIAITQKSLPIFRPHPLWSEQN
                     PQDWWNATNEAMLELSATQDLQAVKAIGLTGQMHGATLLDNADNVLSPAILWNDGRSF
                     MECEELEQLVPNSREITGNLMMPGFTAPKLRWVDKHQPDIAEKVSKVLLPKDYLRLLM
                     SGEYASDMSDASGTMWLDVGKRNWNKSLLNACGLDIENMPKLFEGNQITGYLRPTLAE
                     QWKMKSVPIVAGGGDNAAGAIGIGLYQTGQAMLSLGTSGVYFVVSDKFQANPQKAVHS
                     FCHALPDRWHLMSVILSAASAVDWAVKSLGLKDVSTLFQQVEASQTASDAIFLPYLSG
                     ERTPHNDPYAKGVFWGLSHNDNQITMAKAVIEGVSFALAEGIEVLHETGVVADNIALI
                     GGGAKSVYWRQLLADISGKTFEYRTSGDVGPALGAAKLAQIALNPNQDIATFCQPLPL
                     EQVYQPTPARYAEYQQKRQKFTELYRRLKGL"
     gene            complement(28557..29876)
                     /gene="xylA"
                     /locus_tag="PXA71_000030"
     CDS             complement(28557..29876)
                     /gene="xylA"
                     /locus_tag="PXA71_000030"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HDL5104188.1"
                     /translation="MSNYFDKISKVQYEGANSTNPFAFKHYNPDEVVLGKTMAEHLRL
                     AVCYWHTFCWTGNDMFGVGSLDRSWQKTGDLLQGAKQKAEIAFEFFQKLGIPYYCFHD
                     VDVAPEGNNFKEYQHNFNTIVDILEQKQAETGVKLLWGTANCFTNPRYMSGASTNPNP
                     EVFAWAAAQVFTAMNATKRLGGENYVLWGGREGYETLLNTDLKREREQIGRFMQLVVE
                     HKHKIGFNGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG
                     HTFQHEIATATALDIFGSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTG
                     GFNFDAKIRRQSTDPYDLFHAHIGAIDVLALSLKRAAKMLEDQALQKVVDNRYAGWNQ
                     DLGLQILNGKASLEDLAKIVETQGLDPKPVSGQQEYLENLVNSYIYR"
     gene            30118..31119
                     /gene="xylF"
                     /locus_tag="PXA71_000031"
     CDS             30118..31119
                     /gene="xylF"
                     /locus_tag="PXA71_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005576719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5104189.1"
                     /translation="MKLKSKLLAVATATLMVLSNASVAKDLKIGMSIDDLRLERWQKD
                     RDIFVNKAESLGAKVFVQSANGDATAQISQIENMLNKDIDVLVIIPFNGEVLSNVIAE
                     AKKEGVKVLAYDRLINNADVDFYVSFDNEKVGELQAKSIIGQKPEGNYFLMGGSPVDN
                     NAKLFRKGQMKVLQPLIDSGKIKVVGDQWVDSWLAEKALQIMENALTANKNNIDAVVA
                     SNDATAGGAIQALSAQGLSSKVAISGQDADLAAIKRIIAGTQTMTVYKPITNLADKAA
                     EIAVALGKDEKVEMNAQLNNGMKEVPAYLLEPVVVTKENIDDTVIKDGFHTKDAVYK"
     gene            31186..32700
                     /gene="xylG"
                     /locus_tag="PXA71_000032"
     CDS             31186..32700
                     /gene="xylG"
                     /locus_tag="PXA71_000032"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HDL5104190.1"
                     /translation="MAKLLEMKNITKKFGEVVALNNISISLETGEILSLCGENGSGKS
                     TLMKVLCGIYPAGDYEGEIYFSGEKLIARNIKDTEEKGISIIHQELTLVKNMSILENM
                     FLGNEITKSGITDDNEMYLRCKTLLEQVQLDIDPNTKVGELGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEKETEILLSLIKDLQAHNIACVYISHKLNEVKAISDKICVIRDG
                     EHIGTRSAEGMSEDDIITMMVGREITSLYPHEPHNIGEEVLRVENLTAWHPTNTHIKR
                     VDNANFVLRQGEILGIAGLVGSGRTEMAQCIFGSYQGKYQGDIFLHKQPIKIKNCAQA
                     IENHIVMVPEDRKKHGIIPIMGVGKNITLSSLPQFCFGKKVINEPLEETIINQSIAKL
                     KVKTSSPELAIGRLSGGNQQKAILAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ
                     LAKEGMAIIVISSELPEVLGISDRVLVMHQGKIKADLINQDLTQEKVMEAALKE"
     gene            32704..33831
                     /locus_tag="PXA71_000033"
     CDS             32704..33831
                     /locus_tag="PXA71_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDL5104191.1"
                     /translation="MNKLKSINLQVYIMLIAIVVIMSFFSIATDGAYLSARNISNLLR
                     QTSITGILAIGMVFVIISAEIDLSVGSLMGLLGGFAAISNVWWGWPLSLTIIVTLILG
                     VMLGAWSGWWVAYQKVPSFIVTLAGMLAFRGVLVGLTNGTTVSPISNEMTTIGQGYLP
                     DMVGMILGTIGIFCFIVWGSYQRKARQKLNLTVPSMSKDTLKYGLVAIIVLGAIYLLN
                     DYRGVPFPVLVLVILAIAGTFLARKTAFGRHIYAIGGNIDAARLSGISVEKVKLAIFA
                     LNGLLVAIAGLILSSRLGAGAPSAGQNAELDAIAACVIGGASLAGGIGSIYGVVIGAF
                     IIALLDNGMSMLDVPTFWQYIVKGGILLLAVWVDTISKKKA"
     gene            complement(33847..34377)
                     /locus_tag="PXA71_000034"
     CDS             complement(33847..34377)
                     /locus_tag="PXA71_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5104192.1"
                     /translation="MSENSLKTHYSAKELAELSLACLPKTKQGVLYQAKKQGWTTHKK
                     VGVGGEILEFALSNLPQEIQTEIRSRFMSAVVEAKPKKLPAVRAEVDVGNLTTKQREI
                     ADARMALVAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLVELVAVANAKKTAKRTIV
                     PIFSPIMPDFPLDSRD"
     gene            complement(34393..34656)
                     /locus_tag="PXA71_000035"
     CDS             complement(34393..34656)
                     /locus_tag="PXA71_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5104193.1"
                     /translation="MSTLEDIKKTAKDWHRADIIAALHKAGWSLRQLSLKHGYSQSST
                     LKNAVDRPWLKGERIIAEAIGISPEEIWPERYAQRNHKKFADR"
     gene            34840..35322
                     /locus_tag="PXA71_000036"
     CDS             34840..35322
                     /locus_tag="PXA71_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5104194.1"
                     /translation="MKIECKKVIGFGNRIEQSRKNAKLSRSEVCDALGGIAISTLQAW
                     EADTREPPISKLMALSQILNVEPCYLLTGERHSQSLNVTREPQPVYATKPQTEEGEVV
                     VIKAKLQEAIETLEEVLEITQREMKPAGKAQMVWAFYELLTQEKSEKEKMVGLLKLVA
                     "
     gene            35334..35585
                     /locus_tag="PXA71_000037"
     CDS             35334..35585
                     /locus_tag="PXA71_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104195.1"
                     /translation="MDKQAILKLFRDNSTAGNSQPSQEPIQVFNNSNVIIQNGDNATV
                     IAGCTVDNNTNLTCADKQRVHDLIHSLEQRNRASRDEGA"
     gene            complement(35875..37740)
                     /locus_tag="PXA71_000038"
     CDS             complement(35875..37740)
                     /locus_tag="PXA71_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDL5104196.1"
                     /translation="MQSLLSFVPDFLKQELFWVMALLVFAIWQFIQNKLRMDVVALIV
                     MLFFSLTNILSVKEVLAGLSDPNVVLIALLFIVGEGLVRTGVANQVSDWLMRVSGASE
                     TKVLVLLMLCIAGLGSFMSSTGIVAIFIPVVLAICSGMGISPRRLMMPLSVAGLISGM
                     MTLIATPPNLVAHSELVKSGFEGFNFFSFTPIGLIILVMGIGYMLIARRWLDNGEQSN
                     THSQAQKFSMSQLIEEYQLKERAKMVLVEADSDCVGKSIGQLNLRIEQGLNIIAIQRT
                     KRFRKITVSASVNEIFQPKDILLLDTALDDETYQQRCEQLKLRPIELKGEYFSSQYRS
                     VGMAEISVMPEAECIGKTIRELKFRSRYHLSIVGLKRGDEIIQEELLDTPLKFGDILL
                     VMGVWQQIHRMDDDHRDFFLLRDPAESKNAPPALSQAPHALFSVLTMVLLMITGIVPN
                     VMAALIACLMLGKFRCVDMKSAYDSIHMPSIVLIVGMMPFSIALQKTGGVDLTVRLLL
                     DAMQGLDVHFVLIVLFVVTAIISAFISNTATAILVMPIAIAIANQLGYSPAPFVMTVA
                     VSASAAFMTPVSSPVNTMVLAPAGYKFIDFVKVGVPFTVLVMLVSVFVIPMLFPL"
     gene            complement(37880..38395)
                     /locus_tag="PXA71_000039"
     CDS             complement(37880..38395)
                     /locus_tag="PXA71_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MltR family transcriptional regulator"
                     /protein_id="HDL5104197.1"
                     /translation="MMDYIDKLSEETTLRGFLSIANQRFAKAVEQLIERVFRKTDFAL
                     KSVVDSLFEHQGPLADIEVRLKVLLGLGVISPKVFEDISLFLEVKQHLNEEEDEFAFS
                     HPAVVKFAKDLHHIDFLPINELLNMKASAANKDSMLFQMQQMRLEKMVRSSLILAVTE
                     IDEQLNVESPL"
     gene            complement(38407..39546)
                     /locus_tag="PXA71_000040"
     CDS             complement(38407..39546)
                     /locus_tag="PXA71_000040"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDL5104198.1"
                     /translation="MNALHFGAGNIGRGFIGKLLADARIFVTFADINQTQIDQINQNK
                     QYGVKIVGDDSRVEIVKNIAAINSKDENAVIEQVKNTDLITTAVGPNVLGFIAPLFAK
                     ALVARVESGNTQPLNIIACENMVRGTTFFKGKIFEHLTAEQQAEIEKVVGFVDSAVDR
                     IVPPAEPNPADPLEVTVEEFSEWIVDQTQFKGDIPNIKGMELTDNLMAFVERKLFTLN
                     TGHLICAYLGKQAGVKWIKEAIAIEEIKTQVKATMEESGAVLIKRYGFDPQAHSAYIE
                     KILKRFANPYLNDDVNRVGREPIRKLSENDRLIKPLRGTLEYGLPYQNLVKGVVMALQ
                     YRNEEDPQAVELAEFIANHGVAAAVEKYTGLTDQAVIAQVVELYQ"
     gene            complement(39650..41509)
                     /locus_tag="PXA71_000041"
     CDS             complement(39650..41509)
                     /locus_tag="PXA71_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HDL5104199.1"
                     /translation="MSNLKVKVQGFGRFLSNMVMPNIGAFIAWGFITALFIPTGWLPN
                     ETFAKLVGPMITYLLPLLIGYSGGKLVGGERGAVVGAITTMGIIVGSEIPMFLGAMIV
                     GPLGGWAIKTFDKAIDGKVKSGFEMLVNNFSVGIIGMILAMLSFAFIGGIVTQISAAL
                     GAGVGALVEAGLLPVTSIIVEPAKILFLNNAINHGVFTPLGTAQAQEVGKSILFLIEA
                     NPGPGFGILLAYMFFGRGTAKQTAGSASIIHFLGGIHEIYFPYVLMSPRLILAVIAGG
                     ATGVLTNSLLGGGLIAPASPGSIFAILAMTAPGAHFAVVASVILSCAVTFAIASILLK
                     TQKGEASLEDAQAQTQAMKAESKGVVNGNINKIYVACDAGMGSSAMGASMLRKKVQAA
                     GLNIEVQNLAINDLPQDAQLVITHKDLTARATQRVATAQHLSLTNFLDSAFYDSLVAK
                     LANHQPQQAVQNTQNFANPVEEPQAEGLKLQAAQVFLGLQANSKEEAIRFAGEQLVKA
                     GFVQPSYVDAMFAREQMVSTYLGEGLAVPHGTSDAKDSVLKTGIVVCQYPNGVRFTDE
                     EDGVAKLVVGIAAKGNDHIQILSAITNALDDEQAMKTLTSTNDVEKVLALLSK"
     gene            41811..42361
                     /locus_tag="PXA71_000042"
                     /pseudo
     CDS             41811..42361
                     /locus_tag="PXA71_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005752768.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(42405..43340)
                     /locus_tag="PXA71_000043"
     CDS             complement(42405..43340)
                     /locus_tag="PXA71_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HDL5104200.1"
                     /translation="MNHLDSAKETLNLYAQQIITLNHRLSEEFNEVVNMILACQGRVV
                     VGGIGKSGLVGKKMVATFASTGTPSFFLHPTEAFHGDLGMLKPIDMVILISNSGETDD
                     VNKLIPSLKNFGNKIIAMTGNPYSTLGRNADVILNIGVEREACLNNLAPTSSTLVTMA
                     LGDALAIALMKARDFRPEDFARYHPGGSLGRKLLNRVRDVMVRKVPTASLDTTFTECL
                     SVMNEGRMGVAVIMQDDKLEGIITDGDIRRTLAKFGAESLNKTADEIMTRNPKTINDT
                     EFLAKAEDLMKELKIHSLIAVNDEGKVTGLMEFSS"
     gene            complement(43351..44148)
                     /locus_tag="PXA71_000044"
     CDS             complement(43351..44148)
                     /locus_tag="PXA71_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor"
                     /protein_id="HDL5104201.1"
                     /translation="MKPFERRQQILAYLAQHGRTEVDVLADYFKLTGATIRKDLTSLE
                     EDKKVLRTYGSVVLIDEEILEREEKINKEDKDDKPLAQKTGINLQQKQAIGQKAAELI
                     NEGNSIIFDAGSTVLQMIPHLKAFDNLSLMTNSLTIFNEILKLNKSYNLLISGGTFRE
                     KSASFHGYFAESAFIGSNFDILFIGTDGLDLDVGLTTFNEVYKVSSLMCDAANKIVLL
                     ADSSKFGRKSPNIVCGLEKIHTIITDEGLSQEMREQIKAKGIELLVV"
     gene            complement(44191..44838)
                     /gene="hxpB"
                     /locus_tag="PXA71_000045"
     CDS             complement(44191..44838)
                     /gene="hxpB"
                     /locus_tag="PXA71_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HDL5104202.1"
                     /translation="MQINSVIFDMDGVMIDSEPQWAEAQIAVLADLGINITEQDCEQL
                     TRGKRIDELSDTWIKKFQLSVSNQALSEAILAHGCAAIEQHGKALTGLYELLDFLKSN
                     QIKLAVATSSPPVVIKAVFDRLKLWDYFPIRCSAMDEEYGKPHPAVYLSAVKKLGIEK
                     QECIVIEDSVTGLIAAKAANLTTFLVNTDYQNEKFSIADKRMASLLDVIEKLKQH"
     gene            complement(44901..45281)
                     /gene="gutM"
                     /locus_tag="PXA71_000046"
     CDS             complement(44901..45281)
                     /gene="gutM"
                     /locus_tag="PXA71_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HDL5104203.1"
                     /translation="MDSITLLIILAMIMWLLQAVLGWLQIKAFNQAFMEISKKGKVTV
                     GRNSGRFNPKSVIVLAFDDEKKVVDSLCMKGFSVFARPQKLASVIGLSLDQIVPEKIF
                     PSDKRSQFALKVAISSGYSCSDQK"
     gene            complement(45450..46238)
                     /gene="srlD"
                     /locus_tag="PXA71_000047"
     CDS             complement(45450..46238)
                     /gene="srlD"
                     /locus_tag="PXA71_000047"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HDL5104204.1"
                     /translation="MNNEKKVAIVVGGGQTLGAFLSEGLADAGYRVVVADLNGENAQK
                     VAADINAKQGEGNAIGVQVDAADEPSVEALAKATDTVFGRADVLVYSAGTAKASPIWD
                     FNLNDFDLSVKVNLTGYFLTAKHFSRLMIRDGIKGRIIQINSKSGKVGSKYNSGYSAA
                     KFGGVGLTQSLALDLADKGITVHSLMLGNLLKSPMFQSLIPQYAAKLGIPESEVEQVY
                     IDKVPLKRGCDYQDVLNVLKFYAGEEAAYCTGQSINITGGQVMF"
     gene            complement(46286..46684)
                     /gene="srlB"
                     /locus_tag="PXA71_000048"
                     /gene_synonym="gutB"
     CDS             complement(46286..46684)
                     /gene="srlB"
                     /locus_tag="PXA71_000048"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HDL5104205.1"
                     /translation="MHRLSKRENIYMTIIYQTTFTKIGNFAQESLTDDMLITFKQGAP
                     ADLQDYCFIHNPSELSSPLEVGDIAEFDGVAYPITAVGSVASENLSALGHITFRFDGA
                     NDAEFPGSVHVIGTPPQGLTENSTLIIKRD"
     gene            complement(46729..47730)
                     /locus_tag="PXA71_000049"
     CDS             complement(46729..47730)
                     /locus_tag="PXA71_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HDL5104206.1"
                     /translation="MSNKAIYIEKGNGGWGGPLTLPVVEGKKVLYMTGGTRPAIVNKL
                     VELTGWEAVDGFKEGEPPAEEIGIAIIDCGGVLRCGLYPKRRIPTINIHSTGKSGPLA
                     EFIVEDIYVSAVKENNIRLIDADGSVPVATEQAKPTSSTTATAKEYDSSKKITEQSDG
                     LLAKIGMGMGSVAALFFQAGRDTIDTVLKTILPFMAFVSALIGIIIASGLGDVIAHGL
                     TPLANSPIGLVTLALICSFPLLSPFLGPGAVIAQVIGVLVGTQIGLGNIPPHLALPAL
                     FAINAQAACDFIPVGLSMAEAKQDTVRVGVPSVLVSRFLTGAPTVLIAWAVSAFIYQ"
     gene            complement(47761..48315)
                     /gene="srlA"
                     /locus_tag="PXA71_000050"
     CDS             complement(47761..48315)
                     /gene="srlA"
                     /locus_tag="PXA71_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725059.1"
                     /note="catalyzes the phosphorylation of incoming sugar
                     substrates along with their translocation across the cell
                     membrane; the IIC domain forms the PTS system
                     translocation channel and contains the specific
                     substrate-binding site; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HDL5104207.1"
                     /translation="MIEAITHGAEWFIGLFQKGGETLVGMINGILPLLISLLVVMNAL
                     IKFVGQDRIERLAQRSAGNPISRYLILPVIGTFVFCNPMTLSLGRFLPERYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAISYLLVGMFTNFFRGWI
                     TDFTTAFFEKRMGITLDREVHLSH"
     gene            complement(48553..48861)
                     /locus_tag="PXA71_000051"
     CDS             complement(48553..48861)
                     /locus_tag="PXA71_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL5104208.1"
                     /translation="MKKYIATMLLAFGLVHSSYAQEKTAQIETKQAEKTVVLHIPEMY
                     CQLCVYLVNKELRAVEGVISTKASMKERKATVVVKESVDNQALIQAVGNLKYTAKVIE
                     "
     gene            complement(48863..49231)
                     /locus_tag="PXA71_000052"
     CDS             complement(48863..49231)
                     /locus_tag="PXA71_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104209.1"
                     /translation="MNSSLKSYNHKFITMCVTAIVSAVTSTFCCIGPLVYLVFGISSP
                     WLMELNQLEFLQLPMLLISLAAFGYGFWLLNFSNKIICTKYFSRRTLVILYWVVSVVV
                     MFFLTYPYVLPYILEMWSGE"
     gene            complement(49206..50312)
                     /locus_tag="PXA71_000053"
     CDS             complement(49206..50312)
                     /locus_tag="PXA71_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HDL5104210.1"
                     /translation="MNKLIASLVASSCATAFAAPVQQNNFHTTTHTYEFTQSYDLVVP
                     QGSKGTTNLWIPLPSDTDYQTVKSIEFEGSYKNAYITENNAYGAKTLFATWDTDAPKR
                     DLKVKMVIQTQDREPMAQGALANYQMPEKITYSVDVLEYLKPTAHIKTDGIVKEYADK
                     IVGNEQNPLKKAELIHKWIVDNMERDNSVLGCGDGDVEKILTTKVLKGKCTDINSVFV
                     ALARASNIPAREVFGIRLGQAVKMGQYSKTAFGSSKDGVANESGGQHCRAEFYLAGFG
                     WVPVDSADVAKMRLAEKKDVDDADVQAVSKYLFGNWEMNWVGFNHGRDFDLYPQPELT
                     PLNNFGYPYAEVGGDPLNSFEAKEFGYEFISKEL"
     gene            complement(50552..51595)
                     /locus_tag="PXA71_000054"
     CDS             complement(50552..51595)
                     /locus_tag="PXA71_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL5104211.1"
                     /translation="MQPINIAIAGAGFSSRVFHIPFLKQDARFNIVKVYERTSNNAAE
                     WLPNAETVRDFNALLTPEVDLVLITTPNQTHYAMVKESLLAGKHVLVEKPLVATVAEA
                     EELAELAKRQGKVLYVYQNRRWDSHIATAKSLMEQNLLGELVDCEIRFDRYAKEKNVK
                     VWKESGELGTGLVYDLGVHLIDQALYLFGKPEAVYADVRYQHEGALVDDNFDIQLYYA
                     NGFKVVLKASRYAREPSPTFVLHGKLGSYLKQTPDNQEDLLKNGVQPIGKDWNIEEKE
                     NWGILHTEVEGNVVRQPYRNAEVSYQNLFDDLYQAIAHNAEPIIKLEDVIFVLKVIES
                     VFESAKLGQKIYL"
     gene            complement(51699..51983)
                     /locus_tag="PXA71_000055"
     CDS             complement(51699..51983)
                     /locus_tag="PXA71_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104212.1"
                     /translation="MRYWLISLSILLSGCVVPVTPTGQAGIPMPIIIGVSDPLDSKEV
                     HICTLKPFTQEYRSEHSSRGRAKLNVQKQCRANHSEMFCEEKDIVCKTYD"
     gene            complement(52013..52198)
                     /locus_tag="PXA71_000056"
     CDS             complement(52013..52198)
                     /locus_tag="PXA71_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL5104213.1"
                     /translation="MKCRQATELISQSCDEKLRLQQHMRLQLHLLVCPKCRNFNKNTK
                     KLGKILRAYCNDKDAPF"
     gene            complement(52195..52761)
                     /locus_tag="PXA71_000057"
     CDS             complement(52195..52761)
                     /locus_tag="PXA71_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL5104214.1"
                     /translation="MKSLSSTQIEEIRKQMVKFATLQLADKDLAEDVVQDALTNAYKH
                     SASFRREAALKTWIFAILKNKILDLLRTRKRHIPVSSLCEEEESPSAFFDRHDHWLEH
                     QDVTEWRGVAQSTYQKEFWAIFDICLNKLPAQQARVFMMREHLEMSSAEICQECEISL
                     SNLNVLLHRARLRLQECLSRNWFREESK"
     gene            52870..53823
                     /gene="msrP"
                     /locus_tag="PXA71_000058"
     CDS             52870..53823
                     /gene="msrP"
                     /locus_tag="PXA71_000058"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HDL5104215.1"
                     /translation="MKKLTIQDVTPETIFYQRRKIITALGLGIAASALPKVSMAETQR
                     HLQSLQFKPDPNKGLELTPENKVIGYNNFYEFGVDKSAPAKNAANFKTDPWTLEIGGE
                     VENPFSLNHQQLLNTFPLEERIYRFRCVEAWSMVVPWIGFELARLIEMAKPTSKAKYV
                     VFHTLYDPAQMPGQKNRLLGGGIDYPYVEALRLDEALNSLTLLSVGLYGKTLPPQNGA
                     PIRLVVPWKYGFKSIKSIVKITFAEKRPLTTWESLAPNEYGFYANVNPNVDHPRWSQA
                     SERVIGAGGLLSVKRQPTLMFNGYENEVANLYRGLDLKVNY"
     gene            53823..54407
                     /locus_tag="PXA71_000059"
     CDS             53823..54407
                     /locus_tag="PXA71_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfoxide reductase heme-binding subunit YedZ"
                     /protein_id="HDL5104216.1"
                     /translation="MLTWLRILIHLGCLLPLVWVAQLLYTGNETILGADPIKELEHFL
                     GYGAIVIFCIMFLLGIALQYLKKNQYQILRRPLGLWAFVWAALHISSYLLLELSLDVK
                     LFFSELAGRPYLILGAAAFFILSIMAITSLPMLKRKLGTRWGTIHQWAYPALVLAMVH
                     YYWSVKSVTFDPIIIGVLVLFIVAHKIQAKFAKK"
BASE COUNT        16158 a        11448 c        11124 g        15749 t
ORIGIN      
        1 gaactaagga ggaattgatg gtgcctcgag gcggaatcga accaccgaca cggggatttt
       61 caatcccctg ctctaccgac tgagctatcg aggcaacgtc gttgcgtggt gcattatgct
      121 gattttttcg ggcttcgtca aatacaattc tcaaaaattt agcgtttttg aacgcataat
      181 actaaaaatt gagcaatttc ttagtagtta gccggaaagc tcaaaaagaa aaccctgatg
      241 attactcatc agggcttcag aatatggctc ctcctgcggg actcgaacct gcgacatatg
      301 gattaacagt ccaccgttct accgactgaa ctaaggagga attgatggtg cctcgaggcg
      361 gaatcgaacc accgacacgg ggattttcaa tcccctgctc taccgactga gctatcgagg
      421 caacgtcgtt gcgtggtgca ttatgctgat ttcagcttgc aacgtcaaac gtttttttgc
      481 aaatttaaaa aaaccgctgc tcaaatgtgc tttttttata cttttcggct aaaaaacagc
      541 ataattcaca cattaacgaa tattgcgata tttctctctg gcggtggtta cttttcttaa
      601 ataatttcta gcttgagaag atggatgagc agtggttaaa attcgataaa ccgcatcaga
      661 cgaaagatcg ttaattctat caatcgcaga gtatcggtct gaatcaaaca ctcgtaatac
      721 cgcacctgct ccgctattgt atgcagaaat cattgcatag cgtttagcca caggatcttc
      781 aattccatct aagtattcat cacgcaaaat agtcaaataa agcgtacctg catcaatgtt
      841 atttgatgga ttataaagat attcacgact tggctgccct cccatacctt tacgggcaaa
      901 aatatcacgc ccggcggtac gaggtacaac ctgcattaag ccaatcgcat tggcatagct
      961 gatggcataa gggttgaatg ctgattcgac ttccataatc cctaaaatca aacttggctc
     1021 aataccatac tgcttcgcca ttttacgcac cagcggtaaa tattgtctgg cacgtacttc
     1081 aatgtgtcct gccaccattt taatcgttac aaagctcaca gtttgaccat ttttcaaacg
     1141 gcgtgtttgc accttatttt gcaacaaata agtcgcaaaa tcattggcga tggcaacatt
     1201 ggtaatattt cgcccgaatt gatcttcaac ctgtccgttt aggaaagggt tagagctaat
     1261 cggtgcatcg cctgaggcaa ataaatcaat ccctttcggg tctctgccca ttaataaagt
     1321 atgaataatc gaattgcgta gatgattctg attccctaaa gtctcaatcg taatcacccc
     1381 ttcttcaaac gaaatatggc tacgggtgta aaacttatcc gtatatttca cataatcttt
     1441 cttactggca actaacagct cgttacttcc ccaaatatca tcaatattgt gagaaaactg
     1501 ccctgccaaa atatccaaac cattggtatc tttagaataa tctactcggg tagattttgg
     1561 cttcttagtc gatttattgc tcccacaagc aataagaaac ggaataattg ccaacatcgg
     1621 caaatattta gcatattttt tcattgtgat ttaaccttta ttattcgacc ggcttatagc
     1681 cttcgatgat gatctcttta ccttcaaata aaaaattgac catctcttgt tcgagcagtt
     1741 tacggtgttc ggggttcatc atactgagtt ttttctcatt gacgatcatt gtctgttttt
     1801 taatccactc agaccacgct tgcttgctga ttgagtcaaa aatacgctta cccagctccc
     1861 ccggataaag ttgaaaatct aaaccttctg cctcttgttt taaatattcg caaaatacgg
     1921 tacgagccat aatttaatcc ttaatctcat ttttcacact gaatgccagc tcatctaaaa
     1981 tacgtttaac cggcgttgct aaacccactt cgttatgttg gtgcaaatca taccaataat
     2041 ccgcatttga agatacctta gaaagataat ttcctgcttt ttcttcgaca acaagcggtg
     2101 aattttcact tgtttttttc aaatcggttt ctactaaaac cggggtaata tccaaatgaa
     2161 aatggctaaa agtatgccta aatgcagtta attgctgtga aatttgcaaa ttttgcataa
     2221 aatcagaccg cttgagagcc tctaagctct caaattgcgg aaacacaaat aagccccccc
     2281 aaatgccttt tgcttcccgt ttttgtaaca gcactttcga gccgcttttc agcactaaaa
     2341 aataggtttg acgctccggc aaggtttttt tcggtttctt ggcaggaaag ctatcccacg
     2401 cttgcattgc attcgtttta caattttctt gtagcgggca gagcaagcac ttaggctttg
     2461 tacgggtgca aatcatcgcc cctaaatcca tcatcgcttg gttaaagtct gccacttggg
     2521 tatcaggcgt cacactttcg cttaattgcc aaaggcgatt ttccaccgct ttttcacccg
     2581 cccagccttc tactgcaaaa tagcggctta acacccgttt gacattgcca tctaaaatcg
     2641 ggtgtggggc atctaacaca gaagacaaaa tcgcccctgc agtacttctg cccactccgg
     2701 ttaatgccaa cacatcatca aatcgggtag gaaattcacc gccaaactca tctcgaattt
     2761 gaattgccgc tttatgcaaa tttcttgccc gagcgtaata acccagccct gtccacaaat
     2821 gcaatacttc atcaatcgag gcattagcta agtcaattac ggtgggaaat cgttccataa
     2881 aacgtgcaaa ataaggaata acggtcgcta cttgagtttg ttgcaacatt acctccgaca
     2941 accaaacctg atacagcgtt ttattttgct gccaaggtaa atgtttccgc ccatattgct
     3001 caaaccaagc taaaacagct ttggcaaacg gatcagaagc ttttgctttc gctaaaggaa
     3061 atggggaatt gctgttcatt aaaaatcttg aaatccgaaa aataaattat catactgcaa
     3121 gcggtcagtt ttaccaaaaa ttttacacat taaggaaaaa agatgaaatc gcccatttta
     3181 ggtttccacc acattgcatt aattgtttcc gattacgaaa aatccaaaca tttctacacc
     3241 cgcattttag gggcagagat catcgcagaa acctaccgag agcaacgtgc cagctataaa
     3301 ttagatttac gctttaaaga tggctcacaa attgaattat tcagttttcc tgaaacgccg
     3361 cctcgtttca cctcgcccga aacctgcggg cttcgccatt tggcatttcg agtggaaaat
     3421 attgaatatg ccatcgcatt tttagaacaa catcaattac cgcatgaagg gatccgaatt
     3481 gatgagatca ccggcaaacg cttcacgttt ttccgagatc cggacgatct gccgttagag
     3541 ttttacgagg tctaaatgtt atatttactg attgcaaccc tgatttgggc gagttcattc
     3601 attgtaggta aagtggcgat ttcagccttt gaccctgtcc aaattatgca aattcggctg
     3661 acgttagcgg cgtttatcgc tctgccgttt tttattcctg cgtataaaaa aatccagaaa
     3721 aatcagcaca ttaaagtctg gctgattagt tttctcactt ttcctctgta cgtgatctta
     3781 caattttccg gcttgaaatt aacttccgca gcaagtgccg tggcactact cgggctaaac
     3841 ccgcttttaa ctgtgttagt cggctatttt tgtttcaaaa aacaggcaac caggctcgat
     3901 tttatcctaa gtttatttgc ctgcttgggg attttaatta tggcatcggg tagcgatgat
     3961 agcggttcaa tcaatgtatt aggattattg cttgtaacct taggcagttt aagttttatt
     4021 gtgggaatgt acctcagcaa agagattctg caatcagtaa aagtgatcga tttaaccaag
     4081 atcatgctgg tgcaaggggc aattaccgcc ttacctatta ccttactctt tgcagaaaat
     4141 tggcaactgc caaccagtct ctcagcatgg gcgagcgtag catatttagg cattatttgt
     4201 accagcttgg caatattgtt atggaacaaa ggcatcagcc aatcttcgcc tattcttgca
     4261 ggtattctac tcgcacttga accggtattc ggactgctaa tggcattggt ctttttatca
     4321 gaacagctca gtttagtgac ttgggttggg attattattg ttatttgcac cgccttactc
     4381 tccgttttgc taccgatgat gaaaagatac aagcggttaa tttaacagga ttttttgcaa
     4441 atgaaatttc cccctctttc ccacggcatt ttacttcgcc gttataaacg ttttcttgcc
     4501 gatattcagt tgccaaatgg cgaacaaatt accctccatt gcccaaatac cggtgcgatg
     4561 acaggctgtg ccaaccccgg tgatacagtt tggttttcca cctctcataa ccccaaacgt
     4621 aaatatgctc acacttggga actaacccaa acccaagcgg gggattttat ttgtgtcaat
     4681 accttgagag ccaatcagct tgtacaagaa gccttggaaa atcaatggat tagcgagctt
     4741 gcggattatc agcacattct gcctgaacaa aaatatggca gtgaaaacag tcggattgat
     4801 tttttgctca aatcggacct tctgccggat tgttttgtgg aagtgaaatc taccaccctt
     4861 ttaaccgaaa acggtgtggg aatgttcccc gatgccaaaa ccgagcgggg gcaaaaacat
     4921 ttgcgggagc tgacgaaaat cgctgaacag ggcttacaag cggtcatttt tttcgctatt
     4981 ttgcacacag gtattgaacg gtttgaagtg gcaaagcaga tagaccccaa atatgccgaa
     5041 ttattcgctc aagccattgc acaaaaagtg caggttctct cctataaaat ggcaatttca
     5101 ttggaaaacg ggcaacctat tgcggcaacc ttaacaaaga aatgtgagtt ttaagcttga
     5161 aaacacacag catatcccca tataagccaa agtttttaaa aagaaggatt tagtatgaca
     5221 acgattgtat gcgtgcgtaa agacggaaaa gtggctatcg gtggtgatgg tcaggcaacg
     5281 cttggaaatt gtatcgagaa aggcacggtg cggaaagttc gccgtttgta taaagacaaa
     5341 gtggtgacag gctttgccgg ctcgaccgct gatgccttta ttttgcgtga tttattcgag
     5401 aaaaaattgg agttacacca agggcattta gtgaaatcgg cagtggaact ggcaaaagag
     5461 tggcgtaccg agcgtgcttt acgccgttta gaagcgatga tgattgtcgc caatgacagc
     5521 gagtttttat tggtttcagg ttcgggcgat gtgattgagc cggagcaaga tgtgctggcg
     5581 attggttcag gcggtaacta tgcgaaagcc gctgctcttg cgttattacg caccgaaaat
     5641 aatttatctg caaaagaaat cgttgcggaa gcgttaaaaa tcgccggcga tattgatatt
     5701 tacagtaact acaatcacgt gattgaagaa gtttagttaa ataactctct ccccttgtgg
     5761 gacaaatgtt tacatttgaa cgttggcttt gccaacggct ccacaggagc gagcgtagcg
     5821 agtattgaga ccgaaaaata tttcgttcag aaatattttt cagagagagg ggttaatgca
     5881 aaacgtttaa gaaaaaagac cgcttgttac cctctccctg atttttcttc tgaacaaaga
     5941 aaaatctgtc cctctcccac aaggggagag ggtaattaat ttaaggaata acattatgtc
     6001 aatgacaccc cgtgaaatcg tctcagaatt agacgcacac attatcggac aaaaagatgc
     6061 aaaacgtgcg gtagcaattg ctttgcgtaa ccgctggaga agaatgcagt tgccggaaga
     6121 tctccgccaa gaagtgaccc ccaaaaatat tttaatgatc ggtccgaccg gtgtgggtaa
     6181 aaccgaaatc gcccgccgtt tggcgaagct tgccaatgcc ccttttatca aagttgaggc
     6241 aaccaaattc actgaagtgg ggtatgtggg taaagaagtg gattcgatta tccgtgatct
     6301 agctgatgtg tcgatgaaat tagtccgcca acaagcggtc gaaaaaaata aaatgcgtgc
     6361 acaagatgca gcggaagatc gcattttaga cgtattattg ccaccggcga aagatcagtg
     6421 gggaaatgtg caggaatccg acaataattc tacccgccaa actttccgca aaaaattgcg
     6481 tgaagggcaa ttagacgata aagagattga aattgacgtg gcagctcaag tgagcgttga
     6541 gattatgacc ccgccgggaa tggaagagat gacctcgcaa ttacaatcgc tgtttgaggg
     6601 aatgtcgcca agcaaaacca aaaaacgcaa aatgaaaatc aaagatgcgt taaaggtgat
     6661 gcttgatgaa gaagcggcga aattagtaaa tcctgaagag ctgaaacagc aagcgattga
     6721 agcggtggaa cagcacggta ttgtctttat tgatgagatc gacaaaatct gtaaaaaagg
     6781 cgagcattcg ggtggagatg tttctcgtga aggtgttcag cgtgatttac ttccaatcat
     6841 tgaaggctca acggtaaata ccaagcatgg tatggtgaaa accgaccata ttctgtttat
     6901 ctgctcgggg gcattccaag tggctcgccc gtctgattta ctcccagaat tacagggtcg
     6961 cttgccgatt cgtgtggagt taaaatcgct taccaaagaa gattttgagc gtattttaac
     7021 cgaaccgaat gcctcattaa ccttgcaata tcgtgagttg atgaaaactg aaggcgtgga
     7081 gattgagttc actaaagacg gtatcagccg tattgcagaa agtgcattcc gtgtgaacga
     7141 gaaaaccgaa aacatcgggg caagacgttt acacaccgtg cttgagcgtt tgatggacgg
     7201 catttcgttc gatgccagcg aacgccgtgg tgaaaaaatc atcattgatg aaaactatgt
     7261 ttccgaagcg ttaaatgacg tggtggaaaa cgaagattta agtcgcttta ttttgtagtt
     7321 ttaagttata caagcggtta ttttagcgaa aaatcttgcg aattagccgc ttttcatatt
     7381 gttagttgta aaaatgaaaa atctatacaa atggcctgct gcacaatcgc tttatccaaa
     7441 tcagggaaag aagtcttacg cagggaaacg ttttcgttac cgtcttcgct cttggttgca
     7501 tcattccaaa atcaagcaat ttgagcagtt cgttacacaa aatccacaac tgattccgct
     7561 cttaaatgct cgaccaaatt acagctaccc cgtggctcac cgctttttag ataagcgttt
     7621 cagtgcaaaa caacgcttac aaaaaatcac agataacctg ctgtttttac cgcaaaaatt
     7681 ggctcattta ccacctctat gggaacaagc ggtcaatttt ggtgaaatta ttgcagattt
     7741 tgagttatgg cttaacatca atgaacatca gccgatggaa ggtttttggg cattagaact
     7801 tcgccacaga ccgactaatc agctagttta tttattaaca tttggtaagt tagatgaagc
     7861 cttgttgata gccgtaattc aaggtccgaa ttttgaaggt tcaaaagagc tggtgaaaca
     7921 attaaccaaa agttgccacg gcttacgccc ggcctattta atggttgaaa cgatgaaggc
     7981 tttaacggct gttcttggct atcagagttt actaggcatt ccacagaaat accagaataa
     8041 atcccgctgg gtgcaaagta agcgctatgt agtggattat gatgctattt ttgcggaatc
     8101 gggcggaaag ccgggaaatt attggcagtt accccttgaa ttggaaagta aaaaaataga
     8161 tgaaattcca agcaaaaaac gctcaatgta tcgcaagcgt tatgaaatgc tagctaattt
     8221 aaagcagacc atggagctta tgcttaaaac ttatactggc ttaaatgggt aaatcaaaga
     8281 atacaagcgg tcaaaatctg caaaactttg caaaactttg caaaaaatga ccgcttacaa
     8341 gttacttgcc gcccatccat ttatcataga ttttttgata ttcgccattc tctttaatcg
     8401 tttttaatgc tgcattgaat tgatcaacta atacttggtt tttcaagtga gttgcaatgc
     8461 ctaaaccatc accaaaatag tttggattat tgattttctc ccctacaaaa tctagccctt
     8521 cgtgttttct tgccatctca gccaataccg gcacatcgcc aaaaatagca tcaattcgcc
     8581 cattttgcac atctaaaata gcattttgat aagaggcata agatttcaca ttgtactctt
     8641 ttttctcttt tgctaaatag tgttggtaag tagtcccatt ttgcacacca atcgttttca
     8701 ccttagcaaa atctgtatct tttttcgcaa tgaaggcagc agagcttgga aagtaaggct
     8761 cgctaaataa tacttgtttc ttacgtggtt ccgtaatacc catacctgaa attgcagcat
     8821 caaattgttt ttgttttagg ctttggatta agctatcaaa aggttggcta tggaatgtac
     8881 aatttgcatt catctcttta cagatagcat ttgcaatatc cacatcaaaa ccgataattt
     8941 ctcccttctc ttcggtcatt tcaaatggag gatagcttgg ctccatcaca aatttgatat
     9001 cttgtgcctg cgcagtaacc acacacccga ataaaagggt caaaagtgtt tttttcataa
     9061 aaagtccctg tgttttcatt ataaggatta ccactttaac gcagttactt tcttaaaaaa
     9121 agtcttcttt tcataaagtt tgttttatgt catacaaaca catcaaattg agatgtagtt
     9181 tctcaatcct cttgattcct ctatctcaaa aaaacaaccc aaaagaaaaa agaaaagtat
     9241 atgttacatt aatattacaa tgtaattatt ttgtttaatt tccctacatt ttgtataact
     9301 ttaaaacact cctttttctc ttctgattat ataaaagaca aaaaatacaa tttaagctac
     9361 aaaaaacaac aaaaaacaac aaaaaacacg acaataagat cgagtaatga ttatattatg
     9421 ttataatttt tgacctaatt tagaataatt atcgagtgca aattatgaat caatcttatt
     9481 ttaacttact aggaaacatt acttggctat ggatgaactc ctccctccac aaagaatgga
     9541 gctgtgaact actagcacgc aatgtgattc ctgcaattga aaatgaacaa tatatgctac
     9601 ttatagataa cggtattccg atcgcttatt gtagttgggc agatttaaac cttgagactg
     9661 aggtgaaata tattaaggat attaattcgt taacaccaga agaatggcag tctggtgaca
     9721 gacgctggat tattgattgg gtagcaccat tcggacattc tcaattactt tataaaaaaa
     9781 tgtgtcagaa ataccctgat atgatcgtca gatctatacg cttttatcca aagcagaaag
     9841 aattaggcaa aattgcctac tttaaaggag gtaaattaga taaaaaaaca gcaaaaaaac
     9901 gttttgatac atatcaagaa gagctggcaa cagcacttaa aaatgaattt aattttatta
     9961 aaaaatagaa ggagacatcc cttatgggaa ctagacttac aaccctatca aatgggctaa
    10021 aaaacacttt aacggcaacc aaaagtggct tacataaagc cggtcaatca ttaacccaag
    10081 ccggcagttc tttaaaaact ggggcaaaaa aaattatcct ctatattccc caaaattacc
    10141 aatatgatac tgaacaaggt aatggtttac aggatttagt caaagcggcc gaagagttgg
    10201 ggattgaggt acaaagagaa gaacgcaata atattgcaac agctcaaacc agtttaggca
    10261 cgattcaaac cgctattggc ttaactgagc gtggcattgt gttatccgct ccacaaattg
    10321 ataaattgct acagaaaact aaagcaggcc aagcattagg ttctgccgaa agcattgtac
    10381 aaaatgcaaa taaagccaaa actgtattat ctggcattca atctatttta ggctcagtat
    10441 tggctggaat ggatttagat gaggccttac agaataacag caaccaacat gctcttgcta
    10501 aagctggctt ggagctaaca aattcattaa ttgaaaatat tgctaattca gtaaaaacac
    10561 ttgacgaatt tggtgagcaa attagtcaat ttggttcaaa actacaaaat atcaaaggct
    10621 tagggacttt aggagacaaa ctcaaaaata tcggtggact tgataaagct ggccttggtt
    10681 tagatgttat ctcagggcta ttatcgggcg caacagctgc acttgtactt gcagataaaa
    10741 atgcttcaac agctaaaaaa gtgggtgcgg gttttgaatt ggcaaaccaa gttgttggta
    10801 atattaccaa agccgtttct tcttacattt tagcccaacg tgttgcagca ggtttatctt
    10861 caactgggcc tgtggctgct ttaattgctt ctactgtttc tcttgcgatt agcccattag
    10921 catttgccgg tattgccgat aaatttaatc atgcaaaaag tttagagagt tatgccgaac
    10981 gctttaaaaa attaggctat gacggagata atttattagc agaatatcag cggggaacag
    11041 ggactattga tgcatcggtt actgcaatta ataccgcatt ggccgctatt gctggtggtg
    11101 tgtctgctgc tgcagccggc tcggttattg cttcaccgat tgccttatta gtatctggga
    11161 ttaccggtgt aatttctacg attctgcaat attctaaaca agcaatgttt gagcacgttg
    11221 caaataaaat tcataacaaa attgtagaat gggaaaaaaa taatcacggt aagaactact
    11281 ttgaaaatgg ttacgatgcc cgttatcttg cgaatttaca agataatatg aaattcttac
    11341 tgaacttaaa caaagagtta caggcagaac gtgtcatcgc tattactcag cagcaatggg
    11401 ataacaacat tggtgattta gctggtatta gccgtttagg tgaaaaagtc cttagtggta
    11461 aagcctatgt ggatgcgttt gaagaaggca aacacattaa agccgataaa ttagtacagt
    11521 tggattcggc aaacggtatt attgatgtga gtaattcggg taaagcgaaa actcagcata
    11581 tcttattcag aacgccatta ttgacgccgg gaacagagca tcgtgaacgc gtacaaacag
    11641 gtaaatatga atatattacc aagctcaata ttaaccgtgt agatagctgg aaaattacag
    11701 atggtgcagc aagttctacc tttgatttaa ctaacgttgt tcagcgtatt ggtattgaat
    11761 tagacaatgc tggaaatgta actaaaacca aagaaacaaa aattattgcc aaacttggtg
    11821 aaggtgatga caacgtattt gttggttctg gtacgacgga aattgatggc ggtgaaggtt
    11881 acgaccgagt tcactatagc cgtggaaact atggtgcttt aactattgat gcaaccaaag
    11941 agaccgagca aggtagttat accgtaaatc gtttcgtaga aaccggtaaa gcactacacg
    12001 aagtgacttc aacccatacc gcattagtgg gcaaccgtga agaaaaaata gaatatcgtc
    12061 atagcaataa ccagcaccat gccggttatt acaccaaaga taccttgaaa gctgttgaag
    12121 aaattatcgg tacatcacat aacgatatct ttaaaggtag taagttcaat gatgccttta
    12181 acggtggtga tggtgtcgat actattgacg gtaacgacgg caatgaccgc ttatttggtg
    12241 gtaaaggcga tgatattctc gatggtggaa atggtgatga ttttatcgat ggcggtaaag
    12301 gcaacgacct attacacggt ggcaagggcg atgatatttt cgttcaccgt aaaggcgatg
    12361 gtaatgatat tattaccgat tctgacggca atgataaatt atcattctct gattcgaact
    12421 taaaagattt aacatttgaa aaagttaaac ataatcttgt catcacgaat agcaaaaaag
    12481 agaaagtgac cattcaaaac tggttccgag aggctgattt tgctaaagaa gtgcctaatt
    12541 ataaagcaac taaagatgag aaaatcgaag aaatcatcgg tcaaaatggc gagcggatca
    12601 cctcaaagca agttgatgat cttatcgcaa aaggtaacgg caaaattacc caagatgagc
    12661 tatcaaaagt tgttgataac tatgaattgc tcaaacatag caaaaatgtg acaaacagct
    12721 tagataagtt aatctcatct gtaagtgcat ttacctcgtc taatgattcg agaaatgtat
    12781 tagtggctcc aacttcaatg ttggatcaaa gtttatcttc tcttcaattt gctagagcag
    12841 cttaattttt aatgattggc aactctatat tgtttcacac attatagagt tgccgtttta
    12901 ttttataaaa ggagacaata tggaagctaa ccatcaaagg aatgatcttg gtttagttgc
    12961 cctcactatg ttggcacaat accataatat ttcgcttaat ccggaagaaa taaaacataa
    13021 atttgatctt gacggaaaag ggctttcttt aactgcttgg cttttagctg caaaatcgtt
    13081 agcgttgaaa gcgaaacaca ttaaaaaaga gatttcccgc ttacacttgg tgaatttacc
    13141 ggcattagtt tggcaagata acggtaaaca ttttttattg gtaaaagtgg ataccgataa
    13201 taaccgctat ttaacttaca atttggaaca agatgctcca caaattctgt cacaagacga
    13261 atttgaagcc tgctatcaag ggcagttaat tttggtcacg tccagagctt ccgtagtagg
    13321 tcaattagca aagttcgatt tcacctggtt tattccggcg gtgatcaaat accgaaaaat
    13381 ctttctagaa accttgattg tttcgatctt tttgcaaatt tttgccctaa ttacaccgct
    13441 attcttccaa gttgttatgg ataaagtact ggtgcatcga ggtttttcaa ccttgaatat
    13501 cattacggtt gccttagcta ttgtgatcat ctttgaaatt gtactaagtg gtttgagaac
    13561 ctatgttttt tctcatagca ctagccgtat tgatgttgaa ttaggcgcta aattatttcg
    13621 acatttatta tcactaccca tttcttattt tgaaaacaga cgagttggag atacagtcgc
    13681 tagggttaga gaattagatc aaattcgtaa tttccttacc ggacaagcat taacctcggt
    13741 gttagatctc ttattctctt ttatcttttt tgccgtaatg tggtattaca gcccaaaatt
    13801 aaccttggta attcttggtt cattgccctg ctatatttta tggtcaattt ttattagtcc
    13861 gattttaaga cggcgtttag atgagaaatt tgcccgaagt gctgataacc aagcattctt
    13921 agttgagtcg gtaacagcca tcaatatgat taaagcgatg gcggttgctc cacaaatgac
    13981 ggatacatgg gataaacagc tggcaagcta tgtttcatca agtttccgtg tcaccgtatt
    14041 agcaaccatt gggcaacaag gtgtacaact tattcaaaaa accgttatgg tgattaacct
    14101 ttggttaggg gcacacttag ttatttcagg cgatctgagt attgggcaat taattgcctt
    14161 taatatgcta tcagggcaag tgattgcacc ggtgattcgg ctggctcagc tctggcaaga
    14221 tttccaacaa gttgggattt ccgtcactcg cttaggtgat gttttaaact ctccaaccga
    14281 acaatatcaa ggcaaattat cactaccaga aataaaaggc gatatctcat ttaaaaatat
    14341 ccgctttaga tataaaccag atgcaccaac tattttaaat aatgtgaatt tagaaattag
    14401 gcaaggagaa gtgattggga ttgttggacg ttccggttca ggcaaaagta ctctgactaa
    14461 attactgcaa cgtttttata ttcctgaaaa tgggcaggtt ttgattgatg gacatgatct
    14521 agccttagct gatccaaact ggctacgccg tcaaataggt gtagtgctgc aagataatgt
    14581 gttattaaac cgcagtatcc gagaaaatat tgcgctatca gatccaggaa tgccaatgga
    14641 gcgagtaatt tatgcagcaa aattagcagg ggctcacgat tttatttcag aattgcgtga
    14701 aggttataac accattgtgg gtgaacaagg agcggggctt tcaggcgggc aacgccaacg
    14761 gattgcgatt gctcgagctt tggtaaacaa cccgaaaatc ctgatttttg atgaggcaac
    14821 cagtgccctc gattacgaat ctgagcatat tattatgcaa aatatgcaaa aaatatgcca
    14881 aggcagaacc gtgattttga ttgcacatcg tttatcgacc gtcaaaaatg cggatcgaat
    14941 tattgtgatg gaaaaggggg aaattgttga gcaaggcaag caccacgaat tactgcaaaa
    15001 cagtaacgga ctttattcct acttacacca attacaactt aattaagaag gaaaacaatg
    15061 aaaatatggc ttagtggtat ttatgaattt ttcctacgct ataaaaacat ttgggcagaa
    15121 gtatggaaaa ttcgtaaaga attagaccac ccaaacagaa aaaaagacga aagtgaattt
    15181 ttaccggcac atttagaact gattgaaacc ccggtttcta aaaaaccacg tctaattgct
    15241 tatttgatta tgctattttt agttgtggca attgtgcttg ccagtgtaag caaagttgaa
    15301 attgtggcga ctgctcccgg taaattaact tttagtggca gaagtaaaga aattaaaccg
    15361 attgaaaacg ccattgtaca agaaattttc gttaaagatg ggcagtttgt ggaaaaaggg
    15421 caattattag tcagcttaac tgcattgggt tctgatgcag atatcaaaaa gaccatggct
    15481 tcactttctt tagctaaact ggagaactat cgctaccaaa ctttgcttac tgccattgaa
    15541 aaagagtcct tgccggtgat tgatttatct agaaccgaat ttaaagattc atcggaagaa
    15601 gatcgactac gtattaaaca cttaattgag gagcaataca ccacttggca aaaacaaaaa
    15661 acacagaaaa ctttagcgta taagcgtaaa gaggctgaaa aacaaacaat atttgcctat
    15721 gtccgtaaat atgaaggtgc aacacgtatt gaacaagaaa aattaaaaga ctttaaggca
    15781 ctttataaac agaagtcttt atctaagcac gaacttcttg cgcaagaaaa taaattaatt
    15841 gaggctcaga atgagctagc tgtttatcgc tcaaaattaa atgaattaga aaatgatcta
    15901 ctcaatgtaa aagaagaact tgaattgatc acgcaattct ttaaaagcga tgtgttggaa
    15961 aaattaaagc aacatattga aaatgaacgc caacttcggc tcgagttaga aaaaaataat
    16021 caacgcagac aggcctcgat gatcagagca ccggtttccg gtacggttca gcaactgaaa
    16081 attcacacta taggtggtgt tgttacgact gctgaaacct tgatgatcat tgtgccggaa
    16141 gacgatgtgt tagaggccac cgctctggtt ccaaacaaag atatcggctt tgttgcagca
    16201 gggcaggagg tgattattaa agtggaaact ttcccttata cacgctatgg ttatctaact
    16261 ggtcgaatta aacatattag cccggatgcg attgaacaac ctaatgtagg cttagttttt
    16321 aatgcaacta tagctataga taggaagaat ctaacatcgc ctgatgggcg aaaaattgat
    16381 ttgagttcag gtatgacaat aactgctgaa atcaaaaccg gtgaacggag tgtaatgagt
    16441 tatttactca gcccattaga agaatctgtc acagaaagtt taagggaacg ctaatcgaac
    16501 caaaacaaag ccataaaagc cattttgagc ttttatggct ttatttttta gtccacaagc
    16561 ggtcaaaaaa gcccaatttt ttacactttt ataacaaatt gttctaacta aaaattacta
    16621 attcttttct tttataagac gaatcctcta ttttcatttc attaacattg aactagaaaa
    16681 ggggatttat gagcctaagc attacgaatc tttctcttgg ctaccgcaaa aatcagcaaa
    16741 ggcttatttg aaaagcacgg tgtgcaggtg gaaaaaccgg tgatgtttcg cagctgggct
    16801 cagttggtgg aagccttttt aagtggcaat gtgaacgtgg tgcatctgct ttcgcctatg
    16861 agtttgtggg cgaaatatgg agcaaatgct ccggtgaaag cggtaatgtg gaatcacttg
    16921 gcaggttcgg ctttaacggt tcgccctgaa atcaacagta ttgccgaact ctccggcaaa
    16981 acggtagcaa ttccgttttg gtattcaatt cataatatcg ttttgcaacg attattacga
    17041 gaaaatggct tgaaaatcac cgaaaaagag ccgaaaagcg gtgaagtgcg attaagtgta
    17101 atggctccgt cagatatggt ggcagcgttg gcaagtgagg caatttccgg ctttattgtg
    17161 gcagagccgt tcaatgcgtt agcggaagcc aaaggtgtgg ggaaggtgct gcgttttagt
    17221 ggcgatgtgt ggaaagatca cgcctgctgt ttaaccctaa tgcacgaata cgatattcaa
    17281 caccgcccgg aatgggtgca aaaagtggtg aatgtcttaa ccgaagccca agtgtccacg
    17341 cttgccaacc gtgcagaaac cgctcaatta ttggctcggg gcagcggcta cacgccgcac
    17401 gatcaaaaag tgctggaaaa ggtactggct ccaacccaag ctcagtggga taaatatatc
    17461 gaaacagggg caattcaaaa ccctcagtgg caccaacagc gaatcggttt ccaaccgtat
    17521 ccgttcgatt cctatatgga agagctggtc aaaatgctca aacagaccca cattgccggc
    17581 aataatgcgt ttttacaaca gcttgacccg gtagaggcag cgaaagcgat taacgagccg
    17641 acctttgtgc gaaaagcgat tgagcaaggc ggttgggttg aaacctttaa tttacaaacc
    17701 ggttggacaa gaaccgagca aattagtgta taagcgatag gaacgaacga tgaaacagaa
    17761 atatatttac ggcttagccg gtttattact gctactttta ggttggcagc ttggcacagc
    17821 cttgttaagc caacggttgc cgatggcgtc aatgttagct ccggcaaaaa cctgggaaag
    17881 ttttacttgg ctgatttcct ccggcgaaat ttttccgcac ttatgggcga gtttgcaacg
    17941 cattgctgtc gggctactcg ctgcgttagt gattggtgta ccgctgggct tattgctcgg
    18001 cttctccaag caccttgaaa tgctttgcac gccgtcattc caactactac gtatgatttc
    18061 gccactttcg tggatgccga ttatcgtgat gttacttggt gtaggcgatt tgccgattta
    18121 ttttttactg gcgtttgcca ccgtttggtc gttgattatt tccaccacct caggggtaaa
    18181 aagcattgat ccacaatggt tacaactggg tagagtaatg tcggctaccc gcaaagaact
    18241 gctgtgcaaa attgttgtac cggctattac cggacacgtt ctcaccggtt tacgtgtggc
    18301 ggttgggatt gcgtgggtgg tgctggtacc gtgcgaaatg ctaggcgtga atcaaggact
    18361 cggctatttt attttagaca cccgagaccg attagcctat tccgaactga tggcggtaat
    18421 tataattatc ggcttaatcg gctgggcgtt ggatagctta atccgcttgg ctttagcgaa
    18481 aggcggcaga taaattgaca agcggtcgaa aaattgcatt tttttgcaaa aaatcgaccg
    18541 cttgtttatt cccaaaaagc atattacctt aatttatttt atttctaggg cataaaaaag
    18601 cgatttaaga tagcgacaaa gtaaactaat tatacgaggt aaacacaatg tcggttcttt
    18661 catcttcttt tattcaatgg cttcagcaga acgccgaaaa tttagatcaa tctaacgaac
    18721 gagcggattt actcattcca caaattgccg cactagggct atataaaatc ggcgtgccgg
    18781 aaacgcttgg cggcagcggt ggcactttgg ttgatgcgat caaagccgtt accgaactgg
    18841 gtaatcactc gctggctgcg gcatttgttt cgtggggaca tcgtaccttt atcgagcata
    18901 ttatcgcctc aaaaaatcct attccccgcc aaagctattt ggcggatctg ctaaatggca
    18961 atttaaccgc aggaacaggt ttatccaatg cgatgaaatt tctctccggc attgaagagt
    19021 tgaatgtgaa tattcgtgaa gaaaacggta aacgctattt aaatggccgc ctgccttggg
    19081 taaccaattt acgttcatac cgctttgttg ctagtttcgt tgccggtttt caagacgaac
    19141 gcaaaccgct agtgattgca attccctcca ccgccaaagg cttaacccgc accaaagaat
    19201 tggaatttat cgcattgcaa ggcacgaata ctacctctct cgtatttgag aatgtggaat
    19261 tacaagatga atggattttg gctgatgacg cgcctgagtt tttagcagcc actcgccctg
    19321 cgttcttagg tttacaattt ggtttgccct ttggcttggt tgaacgtagt ttggcggaaa
    19381 tcgaaaaatc gctccctttc cgtgcaattc tcgcctctga gtggcaagct caagttgatg
    19441 ccctcaacga tattaaaact cgtctgttta atggcttaaa tgaagaaggt tattttgtgc
    19501 gtaatccgaa agagcttttc caagcgagaa ttgacattgt caatgtcgtc gcccaaacta
    19561 ttctgctaga actgcaagcg agtggcggac gtggctatct gaaaaatgat acttcaggct
    19621 tcagccgccg ttggaaagaa gcggcatttc tgcccgttgt tacgccaagt gcggtacagc
    19681 tgagaatggt gctggcgaat agttaagcgg ataagagaca aattgttgcc tcttttattt
    19741 tgcaaaaaat agtctaaata taaccgcttg caataaaaat aaaaaaggat gcatttttta
    19801 tgcttcctca attttacggc tatctattat gcaaaaggct gcaattcagg gttaattgga
    19861 atttcggcaa tgttgttaac gtagttacat aatgttgcca agctcacgcc taaaatcaca
    19921 tcaatcgcat tttgttggtt gtaacctgcg gcaaaaaatt cgtttaattg ggcttcggtt
    19981 aatttggctt tttgtaacat tactgcaagg gtgaagcgag ccagagtgtc taatttgtta
    20041 tcgtctatgc gagccgtggc acgtaaagca tttaccactt cttcaggcat ttttaatgct
    20101 tttaaggcga ttttagtatg acctgccacg cagaaaccac agccgttgac cactgctgcg
    20161 gtgatttgta ccacttcacg ttcttcagcg gttaagctgt tacgactatt aataccaccc
    20221 acagtgcggt aagtttccag tgctgttggt gcgttggcta atacgccgat cagatttggg
    20281 ataaaaccgt ttgcttgttg cactgctttt agggcttctt gtgccgtttc aggagcggat
    20341 tcaatagtgt gaatttgaaa ttgagacata aatgttcctt atcaggttgt ttattggtgt
    20401 ggctcatcat aaagaaaagg ctaatttaga acaaatcaaa atcactattt aatataacta
    20461 aaagatctta aagggagtat agttgcctat actccctttg tttatgcaca ggttgcgttt
    20521 ttactcttct gcgtcttctt ttgcccattc taatgagcgg cgaacggctt ttttccaacc
    20581 tttatagcgt ttcgcccgtt tttcttggtc gccgtccggt gtgaaggtgc gttcaatttc
    20641 cgctttgtct ttcagttctt ccaaatcttt ccagaagccg acagcaatac ccgcaagata
    20701 agctgcccct aaagcagtga cttctttcac tttcggacgc tcaactttgg tgtctaaaat
    20761 atcggcttgg aactgcatta agaagttgtt tgcggttgca ccaccgtcca cacgtaacgc
    20821 ttgtagtttc gctttggagt cagactgcat tgcttctaac acatctcggg tttggtaagc
    20881 gatagactct agggtcgcac gcacaatgtg gttacggttt gccccacggg ttaaaccgaa
    20941 aattgagcct cgtgcatacg gatcccaata tggagcacct aagccggtaa aggcaggtac
    21001 aacataaaca ccgttagagt catcttcttt agtggcaaaa tattcgctgt caaagctatc
    21061 gtgaacaatt ttcagctcat cacgcagcca ttgaatagac gcaccggcaa taaatactga
    21121 accttccaac gcatattccg gctcgccttt tgcgttacac gcaatggtcg ttaataaacc
    21181 gttttcagat tgaatcgcag tgttaccggt gtgcatcaac ataaaacagc ctgtaccata
    21241 ggtattcttc gcttgtcctt ctttcacgca taaatgaccg tagagagcgg cttgttggtc
    21301 acctgcaata cccgcgaccg gaatacgcac accgccttga ccgccgatat tagtttgccc
    21361 gtaaacttct gatgaatttt tcacttcagg taacattgag cgtggaatat tgagcaattc
    21421 cagcatttta tcgtcccatt gtttggtgtg aatgttaaac aacatagtac gagaagcgtt
    21481 ggtgtaatcg gtaacgtgta cccgcccttg ggttaatttc cacaccagcc aagtatcgac
    21541 cgtaccgaac agcaattcgc cacgttctgc tttttctctt gccccttcta cgttatctaa
    21601 aatccacttc actttagtgc cggagaagta cggatcgact accaagcctg tcgttttacg
    21661 aatatattcc tcgtgtccgt ctgcttttaa tttatcggta atatccgatg tgcgacgaca
    21721 ttgccacaca atcgcattat aaacaggttt accggtctct ttttcccaca caatcgtggt
    21781 ttcacgttgg tttgtgatcc cgattgcggc aatgctatcc ggcttaatac cggcttttgc
    21841 caccacttca tttaaggtgg aactttggct tgaccaaatt tccatcgggt tatgttctac
    21901 ccagcctgct tgcggataaa tctgggtaaa ttcacgctga gccacttcaa ccacattggc
    21961 atttttatct aataaaaccg cacgagagct ggttgtacct tggtcgagag cgatgatata
    22021 ttgtttttcc atagattact cctgagtatt tgctggaaga ttgttatgaa tgaggttttt
    22081 ataaccccaa gcaccgaata atgcaccgca gattggggcg acaatcggaa tgatgaaata
    22141 cggaatttct tttccgcctg ttaaagcaat ttcaccccaa ccggcaagat aagcaaagag
    22201 tttcggacca aaatcacgag ccgggttcat cgcaaagccg gttaacgggc cggttgctcc
    22261 accaattacc gcaatcaata aaccgatgag taatgcggct aaggctttat tcggcaagcc
    22321 gtttttatca tcgccaatcg ctaaaatagt ggacatcaac accacagtaa tcacaaattc
    22381 aacgatgaag gcggtaacca atgtaatatt agggtttgga taggtggaga acacaccggc
    22441 aaagccaaca gtttcgcccc gagtaatgcc ttgagcggct tcggcggcag taaagagatc
    22501 gctatacata aaataaatca gtgcgacaga gcaaaacgct ccggcaactt gggcgatgac
    22561 atagggcaaa attttatgct tttcaaagcc gtagaatgcg gcaagtgcta tagtgaccgc
    22621 agggttaagg tgagcaccgg aaataccggc agaaatgtag attgccatgg aaacaccaag
    22681 cccccaaacg atggaaattt cccataaacc gaaattcgca ccggctacct gagcagcagc
    22741 aacacaacca gcaccaaaga aaagaataaa acctgtaccg ataaattcgc caatacaggc
    22801 attacgtaag gatttgctca taaagtttct ccttaagatg aaaatgattg gaaagtgatg
    22861 aaaaaatgtt tgaatatgaa catatttcgg agtgatattg ccaaagcggc attttttaag
    22921 caaataggaa gtttcaaatt tgtgaaatcc atcacattat ttttctaaat cactcatttt
    22981 taggtatgat gtgagaaaac gttagatgag gaaaaatgat gtcttcaata cttatgattt
    23041 caatcggggc ggtacttgga gctatgtgcc gctggcaatt agccgtttgg ctaaacccga
    23101 tactcagcca attcgccttt ggtactttag cagcaaattg gcttggttgt ttgttaattg
    23161 gtattgcaat ggggtttaat ttaggcgaga gccagcggtt gctgttcatc agcggttttt
    23221 taggcagttt taccaccttt tccagtttct ctttagaact aacggaaaaa ctattagcag
    23281 aaaaatgggg gcagtttgtg acagtgctga gtttacattt aatcggtggg cttttgctta
    23341 ctttgatagg tgtaatgctt gcaagagccg ttacaagcgg tcgtttttgc tgaaaatttt
    23401 gcaaataaaa aacctcccaa acgggaggtt ttgcgagcga ttaaagtagg atattggaaa
    23461 gtaataaacc aaatccgata ctgaaaatca tactaagtaa gcccggtaac ataaagctat
    23521 ggttgaaaat atatttaccg atacgggttg tgccggtggt gtcgaagtca atcgaggcaa
    23581 taatcgggcc gtagttcgga atgaagaagt agccgtttac cgccacaaat accccgatta
    23641 gcaccggtgc aggaatgccg atagcaatcg ctacagggaa taaggttgca accgttgccc
    23701 cttggctgtt taccaatacg gaaagtacga ataatgcgaa agcaaatgcc caaggtgcgg
    23761 tttcaactaa gcctgaaacc attgatttca cttcgtccat atgaccttgc attaaggtat
    23821 cgcctaacca agcaataccg aaaatcgcaa tcactgcacg cataccggcg tggaagacag
    23881 aacctttggt gatttcatta ccgtccggtt tgcagaagaa gataatcaac gcaccaatac
    23941 ttaacatcac aatttcaatc gtgtgagcca tccccatcgg cttaccatca aacacagggc
    24001 gaagagctgg aattgcgccc attaatacca ctaataatgc accgaatagg aataagccta
    24061 ctgataattt cgcagtcggt tttaacggta attcggttgg attggtagta atgtgatttt
    24121 ctttcacata ttcagggtct tgcaataagc gttgataatt tgggtcgtct tttaattctt
    24181 tgcccatttt atttacaaac acacaagcta aacctaagcc caataaggtc gcaggaatag
    24241 tcacacttaa cacgttaccc aatgtaacac cttgaggttc aaggaaggca accacagcaa
    24301 ctactgccgc agcaatcggg ctggcgacaa tcgcaaattg tgaggcgatt actgccattg
    24361 aaagtggacg ctcagggcgg ataccgttgt ggcggcttac ctctgcaatt acaggtaata
    24421 cagaataagc aacgtgacct gtaccggcaa gcacggtgaa tgtccaagtt acaagcggtg
    24481 cgataaaggt aatgtatttc gggtttttac gcaaaatgcg agtggcaatt ttgatcatat
    24541 agtccaaacc accggctgct tgcatggctg ctgcagccga cacaaccgcc ataatcataa
    24601 acattacatc aatcggtaaa ccggcaggtt ttagcccaaa cccaaatgaa agaatggcta
    24661 agcccaagcc accgaacacc cctaatccga taccgcctac acgggcgcca accaaaatgc
    24721 atagtaacac tatggcaaat tggataataa acatcgcaga cataattttt tgctcctaaa
    24781 taagtaaatg aaactctgtg tttgaaaaaa tctgcatttt tcatcaaatt aatcggcacg
    24841 tactatatca ataaataaaa ctaatctcta taatctaaat caataaaatt tctaattaat
    24901 taaggaataa tatgcaattt tcaaaaatgc acggcttagg caatgatttt atggtggttg
    24961 atggtgtaac ccaaaacgtt taccttaccg aagagatgat ccgtacgctt tctgatcgcc
    25021 atcgtggtat cggtttcgac caacttttat tggttgaacc gccttacgac cctgaattag
    25081 attttcacta tcgcattttt aatgcagacg gcagtgaagt gtcgcaatgt ggcaatgggg
    25141 cgagatgttt tgcccgtttt gttacgctca aaggcttaac caacaaaaaa gacattcacg
    25201 ttagcaccgc aaaaggcaaa atggtgctaa gtttgcaaga agacggcaaa gtgcgtgtga
    25261 atatgggcga accgatttgg gaaccttcgc aagtgccttt tacagcaaat aaatttgaga
    25321 aaaactatat tttacgcacc gagctacaaa ccgtgttatg tggcgtggtt tcaatgggga
    25381 atccgcactg cgtactgcaa gttgatgatg tgaaaaccgc cccggtaaat gaactcgggc
    25441 cgttactaga aagccacgag cgttttcctg aacgggcgaa tatcagcttt atgcaagtag
    25501 tgaatcgcaa tcacgttaaa ttacgggtgt atgagcgtgg agcaggcgaa acccaagcct
    25561 gtggtagcgg tgcgtgcggc acagtggcgg tcggcattat gcaaggcttg ttagataaca
    25621 aagtgcaggt ggatttaccc ggtggaacgc tgattattga atggcaagga gtagggcatc
    25681 ctctgtatat gaccggcgat gccacccaca tttatgatgg atttattaaa ctgtaagttt
    25741 tcccataggg aggcaagcgg tttattttta ccgttttttt gcaaaatagg gttggtttat
    25801 acaaaagtac cagcgtggac gctggcacta tcagactgat gtataacttt tgtttaaatt
    25861 caacttatag atggtgcaag cgtcctcgct tgtaccaaaa caggtttcac tcgagtaact
    25921 tcttcaccaa ctccaacacc acaggtaatt cggtaacacc ttctctatcc aaaaaatgcc
    25981 cgccttgatt taaccgaata taatccgcgt gcaaatgttg ggctaacgca tcactgtatt
    26041 ggtgattcac gaccttatca tctaacgcac ttaccacata gcttggaaag ctcgatacgc
    26101 tcggcaaaat cgcataatag ttggtaaagg cagacagttc gggtaagttt tctaccggtt
    26161 gatagaaccc cgacacaaac accgcccctt taatcttggc gtaatttttg gctaaaaaat
    26221 tcaaaatggc aatgcaacct aaactatgcc cgacaaaaac cgtttgatcg gtcagctcca
    26281 cattttgtgc aagatgattt aaccaaccat ctaatgacgg ctttgccgaa tccggcatat
    26341 tcaaccgctc acaactgaca ccacacttcg ctaattcttg ctccagccaa ggaaaccaat
    26401 gcttatcggc attcgccgta taaccgtgta cgatataaac ctgtgccatt tcacacctcc
    26461 tgattcacca aagattgtac catagcttaa tcaggaaaaa acaagcggtg atttttttaa
    26521 atttttttgc aactcaggta aaatagcacg catttacgca aagaggtcat caatgaacgt
    26581 ttggatttta cttgcgattt ccatctgcct cgaaatcgct gccaccaatt tactcaaatt
    26641 aagcaacggc ttcaccaaag ctataccgac tattggctcg ctcgccttat acggtttatc
    26701 cttttacttt ctctctatta ttttccgcac cctaccggtc ggaatcgtgt atgctatttg
    26761 gtccggcgta gggattgtcc ttaccgccct tgttgcttat tttgctttcg gacagaaaat
    26821 tgacttggca ggcttaatcg gcatcagcct cattattgcc ggtgtattgg tgattaattt
    26881 gttttctaaa gtgtgataca agcggttgat tttacaaaaa aatctgcaaa atcaaccgct
    26941 tgtaatagtt ggcaagaatt ataacccctt taaccgccgg taaagctcag taaatttttg
    27001 gcgtttttgt tgatattctg catagcgggc aggggttggt tggtaaacct gttccagggg
    27061 taacggctga cagaacgtag caatatcctg atttgggttt agcgcaattt gagcgagttt
    27121 tgccgcccct aatgccggac cgacatcacc actggtgcgg tattcaaagg ttttaccgct
    27181 aatatcggca agtagttgtc gccagtacac actttttgct ccaccgccaa ttaatgcaat
    27241 attgtcagca actacaccag tttcgtggag tacctcaatc ccttcagcca aagcgaaact
    27301 taccccttca atcacggctt ttgccatcgt tatttggttg tcattatggc ttaatcccca
    27361 aaatacgcct ttcgcataag ggtcattatg cggtgtacgt tcacccgata aataaggtaa
    27421 gaaaatagca tcagatgccg tttggcttgc ttcaacctgt tggaataaag tcgatacatc
    27481 ttttagtccc aatgatttta ctgcccaatc taccgcagaa gcggcactta atattactga
    27541 catcagatgc caacgatcag gtaaagcgtg gcaaaaacta tgcactgctt tttgcggatt
    27601 agcctgaaat ttatcgctca ctacaaaata aacccctgaa gtccccaatg agagcatagc
    27661 ttgcccggtt tggtataagc caatgccgat tgcaccggca gcattatcgc caccgcctgc
    27721 cacaatcggc acagatttca ttttccattg ctcggcaagg gttggacgta aataacctgt
    27781 gatttgattg ccttcaaaca gtttcggcat attttcaatg tctaatccgc aagcatttag
    27841 tagcgatttg ttccaattcc gtttacccac atcaagccac attgtgccgg aggcatcaga
    27901 catatcagag gcatattcgc cgctcatcaa caagcggaga taatctttcg gtagcaagac
    27961 tttgctgact ttttcggcaa tatcgggctg gtgtttatca acccaacgca atttcggagc
    28021 ggtaaagccc ggcatcatca ggttgcctgt aatttcacgg ctatttggca caagctgttc
    28081 taactcttcg cattccataa aactacgtcc gtcattccat aaaatcgcag gggaaagtac
    28141 attatctgcg ttatctagta aagtcgctcc gtgcatttgc ccggttaaac caatcgcttt
    28201 tactgcttgt aaatcttgag tagcggaaag ttctaacatc gcttcattgg tggcattcca
    28261 ccaatcttgc ggattttgtt cagaccacaa tgggtgtgga cgaaaaatag gaagtgattt
    28321 ttgtgtgatg gcaataatgt gttgattttc atcgagtaac acgactttca cacccgatgt
    28381 gccgagatcg attccaatgt acataaatat tcctttgtta ttgaatacaa gcggtcattt
    28441 tattcggaac atttgcaatt ttaagttttg gagatctatc acccctcttt agcaaagagg
    28501 gggatcagat cgagcttaac tttgcaaaaa attgataaaa aacaaccgct tgtagattaa
    28561 cggtaaatat agctatttac caaattttcc aaatattctt gctgaccgga aacaggtttt
    28621 ggatctaacc cttgggtttc cactattttt gccaaatctt caaggcttgc tttaccgttt
    28681 agaatttgta agcccaaatc ttggttccag ccagcgtagc ggttatctac tactttctgt
    28741 aatgcttgat cttccagcat ttttgccgca cgttttagcg aaagggctaa cacatcaatt
    28801 gccccgatat gtgcgtggaa taaatcatac ggatcggtac tttggcggcg gattttcgca
    28861 tcaaagttga aaccgcccgt tgtgaaacca cctgctttta agatttcata catcacaagg
    28921 gtgttttctt ccacgctgtt tgggaattgg tcggtatccc aacctaattg cggatcacct
    28981 cggttggcat caatcgagcc aaaaatatct aatgcggtgg cagtcgcaat ttcgtgttgg
    29041 aaagtatgcc ctgcaagagt ggcgtggttt gcttcaatgt tgactttgat ctctttttct
    29101 agaccaaact gttttaagaa accgtaaacg gtggcaacat cgtagtcata ttgatgtttg
    29161 gttggttctt gtggttttgg ctcaattaat aaagtgccgt taaaaccgat tttgtgttta
    29221 tgttccacca ctaactgcat aaagcgaccg atttgttcac gctcacgttt taagtcagtg
    29281 ttgagtaggg tttcataacc ttcacgtccg ccccataata cataattttc gccgcctaag
    29341 cgtttggttg cgttcattgc ggtaaagact tgtgctgccg cccaagcaaa gacttccgga
    29401 ttcggattgg ttgaagcacc cgacatatag cgaggattgg taaagcagtt cgccgtaccc
    29461 cataataatt tcacgcctgt ttcagcttgt ttttgctcta aaatatccac aatagtgttg
    29521 aaattgtgct gatattcttt gaaattgttg ccttccggtg caacatccac atcgtggaag
    29581 cagtagtaag gaatgcctaa tttttggaaa aattcaaagg caatttccgc tttttgcttc
    29641 gcaccttgca gtaaatcccc cgttttttgc cagcttctgt caagcgaacc cacgccaaac
    29701 atatcgttac ccgtccagca gaaggtgtgc caatagcaaa ccgctaaccg cagatgttct
    29761 gccatcgttt tgcctaaaac cacttcatcc gggttgtaat gtttgaatgc aaacgggttg
    29821 gtggaattag ccccttcata ttgtactttt gagattttgt cgaaatagtt agacataata
    29881 atgctcctat gaattggaaa aataatcttt cggtaacatc atcggaaaat tatgcaaaac
    29941 cttcaattac gatatttcgt ttttggattt cgattattgg ttaatgtggc gtagatcaca
    30001 aaagtgaaaa atcataatga tattaataaa tatgataatt gaacttcatt tgaaataagc
    30061 ccagactgct tacgggcgaa aaagatgctc acattttcat aaccaatgag gtgaactatg
    30121 aaacttaagt ctaaattatt agccgttgct acggcgactt taatggtact cagcaatgct
    30181 tctgttgcta aagatctaaa aatcggtatg tcaattgatg atttacgctt agagcgttgg
    30241 caaaaagacc gagatatttt tgtgaataaa gcggaaagct taggagcaaa agtcttcgtt
    30301 caatcggcaa atggcgatgc aaccgcacaa atctcacaaa ttgagaatat gttgaataaa
    30361 gatattgatg tattggtgat tattccgttt aacggcgaag tgttatccaa tgtgattgcc
    30421 gaggcgaaga aagaaggtgt taaggtactt gcttacgacc gcttaatcaa taatgccgat
    30481 gtggattttt atgtttcatt tgataatgaa aaagtaggtg aattgcaggc taaaagcatt
    30541 attgggcaaa agccggaggg gaattatttc ctaatgggtg gttcacctgt agataataac
    30601 gcgaagctgt tccgtaaagg tcaaatgaag gtgctacaac cgttaattga cagtggaaaa
    30661 attaaagtgg taggcgatca atgggtagat tcttggcttg ctgaaaaagc attacagatt
    30721 atggaaaatg cactaactgc taataaaaat aatattgatg cagttgtagc ttcaaacgat
    30781 gcaaccgcag gcggtgcaat tcaagcgtta agtgcccaag ggttatccag caaggttgca
    30841 atttccggac aagatgcaga tttagccgca attaaacgta ttattgccgg tacgcaaacg
    30901 atgacagtgt ataaaccaat taccaattta gccgacaaag ctgccgaaat tgctgttgca
    30961 ttaggtaaag atgagaaagt agaaatgaat gctcaattaa ataacggtat gaaagaagta
    31021 ccggcatatt tattagagcc ggttgttgta actaaagaaa atattgatga cacagtaatt
    31081 aaagacggct tccataccaa agatgcagta tataaataaa tcactttaat ttttctagat
    31141 ggcgaggctt cctcgccatt tttgaaaata aggggctaac taagtatggc gaaattatta
    31201 gaaatgaaga acatcactaa aaaattcggt gaggttgtgg cattaaataa tatttcaatt
    31261 tcccttgaaa ccggcgaaat actttcttta tgtggtgaaa atggttcagg caaatcaact
    31321 ctgatgaaag tattatgtgg aatttatcct gccggtgatt atgaagggga aatctatttt
    31381 tccggcgaaa aattgattgc cagaaatatc aaagatactg aagaaaaagg catttcgatt
    31441 attcaccaag aattgacctt agtaaaaaat atgtcgattt tggagaatat gtttttaggg
    31501 aatgaaatta ccaaatcagg gattacagat gacaatgaaa tgtatctgcg ttgtaaaacc
    31561 ttacttgaac aagtgcagtt ggatattgac ccaaacacca aagttggaga gctaggttta
    31621 gggcaacaac agttggttga aattgccaaa gcattgaata aacaggtacg gttgttgatt
    31681 ttagacgagc ctaccgcctc gttaaccgaa aaagaaaccg agattctgct gagtttaatt
    31741 aaagatttac aagctcacaa tattgcttgt gtttatattt cacacaaatt gaatgaagtg
    31801 aaagccattt ccgacaaaat ctgtgtcatt cgagacggcg aacatatcgg tactcgcagt
    31861 gcagagggaa tgagtgaaga cgatattatt acgatgatgg ttggacgtga gattacctcg
    31921 ctctacccac acgagccaca caatattggt gaagaagtcc ttcgagttga aaatttaacc
    31981 gcttggcacc caaccaatac acatatcaaa cgggttgata atgctaattt tgtactacgc
    32041 caaggtgaaa ttttaggtat tgctggtttg gtcggttcag ggcgaaccga gatggcacaa
    32101 tgtatttttg gctcttacca aggcaaatat caaggtgata tttttctgca taagcaaccg
    32161 attaaaatca aaaattgtgc acaagcgatt gaaaaccata ttgtgatggt gccggaagat
    32221 cgcaaaaaac acggcatcat tccaattatg ggggtgggta aaaacataac tctctcttca
    32281 ttaccgcaat tttgttttgg caaaaaagta ataaatgaac cgctggaaga aaccattatc
    32341 aaccaatcta ttgcaaaact gaaagtgaaa acttcctcgc ctgaattagc aattggacgg
    32401 ttaagtggcg gtaatcagca aaaagcaatt ttggcaaaat gcctattgct taaccctaaa
    32461 atcctgattt tagatgagcc gacccgtggt atcgacgtgg gagcaaaata tgaaatttat
    32521 aagctcatca accaattagc taaagaaggt atggcaatta tcgtcatttc ctccgaatta
    32581 cctgaagttt taggcattag tgatcgtgta ttggttatgc accaaggcaa aattaaagca
    32641 gatttgatta accaagacct tacccaagaa aaagtaatgg aagcggcact caaggagtaa
    32701 cctatgaata agttaaaatc gattaattta caagtttata ttatgctgat tgcaattgtt
    32761 gtgattatga gctttttctc tattgcaact gacggtgctt atttaagtgc cagaaatatc
    32821 tccaacctgt tacgccaaac ctccattacc ggtattcttg ccatcggtat ggtatttgtg
    32881 attatttccg cagaaattga tttatcggtt ggctcgctaa tgggcttact cggtggattt
    32941 gccgccatca gtaatgtatg gtggggctgg ccgctctcgt taactattat agttacttta
    33001 attttaggcg tcatgctggg tgcttggagc ggttggtggg ttgcttatca aaaagtgccg
    33061 tcctttattg taactcttgc cggtatgctg gcgtttcgtg gtgtattggt cggcttaacc
    33121 aacgggacaa ccgtttcacc gattagcaat gaaatgacaa ccattggtca aggctatttg
    33181 cctgatatgg tgggtatgat tttaggtact atcgggatat tttgctttat tgtttggggt
    33241 agctaccaac gcaaagccag acaaaaactc aatcttactg tgccttctat gtcgaaagac
    33301 acgctgaaat acggactagt tgcaattatc gtattaggtg cgatctacct actcaatgat
    33361 taccgtggtg tgccattccc ggtattggtg ttggtgattc tagccattgc cggcacattc
    33421 ttggccagaa aaaccgcctt cgggcgtcac atttatgcga ttggtggcaa cattgatgcc
    33481 gctcgcctct cggggatttc agttgaaaaa gtcaaacttg cgatttttgc cttaaacggc
    33541 ttattagttg ccattgcagg cttgatttta agctcacgtc ttggagccgg cgcaccttcc
    33601 gccgggcaaa atgccgaatt agatgcgatt gccgcctgcg tgattggtgg agccagttta
    33661 gccggcggta tcggtagcat ttatggcgta gttattggag catttattat tgctttgctg
    33721 gataacggta tgagtatgct tgatgtgcca accttctggc aatatatcgt taaaggtgga
    33781 attctactgc ttgcagtttg ggtagatacc atcagcaaga aaaaagccta attggataac
    33841 aagcggtcaa tctcgactat ccaacgggaa atccggcata atcgggctaa aaatgggaac
    33901 tattgtgcgt tttgccgtct ttttagcatt tgctacggca accagctcca ccaagtgcgg
    33961 tggcatttcg ccttgtttgg caaggttgca aaggtaggtt atcgctttaa tccggctcat
    34021 tgagccttcc agttccaaca catacgccac cagtgccatt cgtgcatcag caatttctcg
    34081 ctgtttggtg gtcaggtttc ccacatccac ctccgcacgc actgccggta actttttcgg
    34141 cttggcttcc accaccgccg acataaagcg ggagcggatt tcggtttgga tttcttgagg
    34201 gaggtttgag agtgcaaatt ctaaaatttc tcccccaact ccaacctttt tatgagtagt
    34261 ccatccttgt ttctttgcct gatacaaaac tccttgcttt gttttaggta aacaggctaa
    34321 acttaactca gccaattctt ttgccgaata gtgtgttttt agactgtttt cactcataaa
    34381 aacctcttta agctatctgt cggcaaattt tttatggttt cgttgagcat aacgttcagg
    34441 ccaaatttct tcgggtgata taccgattgc ttcggcaata atacgctcac cctttaacca
    34501 cggacgatct acagcgtttt tcaaggtgct ggattgactg tagccatgct tcaatgagag
    34561 ttgtctaagc gaccaacccg ctttatgtaa agcagcgatg atgtcggccc tatgccagtc
    34621 tttcgctgtt tttttaatat cttccaatgt actcattaga taactccttt cgcttaacga
    34681 tttagataat atacctattt ttactaaaaa taaagtgtaa aaaggttgct ttatagttga
    34741 tttatgagca aataaactta gtttgctgta agttattgat ttatttatag gtttttagag
    34801 tgtaaaaggc taaaaatctc aacttatttt tttacagtta tgaaaataga gtgtaaaaag
    34861 gttattggtt tcggtaaccg aatagaacag agcagaaaaa atgcaaaatt aagtagatct
    34921 gaggtttgtg atgccctagg aggtattgca atatctacat tacaagcgtg ggaggctgat
    34981 acaagagaac ctcctatatc aaaacttatg gctttgtcac aaatacttaa cgttgagcct
    35041 tgctacctat taacaggtga gcgacactcg caaagcctta atgtcacaag agagccacag
    35101 cctgtgtatg ccacaaaacc gcagacagaa gaaggggaag tagttgttat caaagctaag
    35161 ttacaagagg caatagaaac gttggaagag gtgctggaaa ttacccaacg ggaaatgaag
    35221 cctgccggaa aagcccaaat ggtgtgggct ttctacgagc ttctcacgca agaaaaaagc
    35281 gaaaaagaaa aaatggtggg attactcaaa ctggtggcat aacaggggac aatatggaca
    35341 aacaagccat tctcaaatta ttcagagaca atagcactgc cggcaacagc cagccaagcc
    35401 aagagcctat acaggtgttt aataacagca acgtcatcat tcaaaacggc gataacgcca
    35461 cggtgattgc cggctgcacg gtggataata acaccaacct aacctgtgcc gataaacaac
    35521 gtgtacacga cctcattcac agcttagagc aacgcaaccg agccagccga gatgagggcg
    35581 cttaaaattg ttttaaaatc cgtttaaacc tgctcagacc tatgcaaaaa ataacgtaaa
    35641 aatagcccat ttttttctat ttttgctcat tttcgttttt tgcataactc accccaaaca
    35701 aaaacggcga agccttgtat ttcctagcct cgccgttatt tttccgccca aatttttttc
    35761 tttctctcta tgcaaaaaag atcagtaccc cacactatgt tgccagacat actcaacaat
    35821 tttaccgtca acgtcagatt accaaaaatg accgcttgta atttagagga gtgtttagag
    35881 cggaaataac atcggaatca caaacaccga caccagcatc accagtacag taaacggcac
    35941 accaacttta acgaaatcaa taaatttata gcctgccggt gctaatacca tcgtatttac
    36001 cggtgaagaa accggcgtca taaaagcggc ggaggctgaa acagcgaccg tcatcacaaa
    36061 aggtgccggt gagtagccaa gttggttagc aatcgcaatg gctatcggca taaccaaaat
    36121 tgcagtcgct gtgttggaaa taaaagcact gataatcgct gttactacaa ataatactat
    36181 tagaacaaaa tgtacatcta agccttgcat tgcatcaagt agaagcctaa cggttaaatc
    36241 cacaccaccg gttttttgta aggcaataga aaacggcatc atccccacaa tcaacacaat
    36301 gcttggcata tgaatcgaat cataagcact tttcatatcc acacagcgga acttgcctaa
    36361 cattaagcag gcaatcaacg ctgccatcac gtttggcaca atgccggtaa tcatcagcaa
    36421 caccatagtc agcactgaga acagagcgtg aggggcttgg cttaacgccg gaggggcgtt
    36481 tttactttct gccggatctc taagcaagaa gaaatctcga tgatcgtcgt ccatacggtg
    36541 aatttgttgc catacgccca tcaccaataa aatatcgccg aatttgagtg gcgtatcgag
    36601 cagttcctct tgtatgattt catcaccacg ttttaagccg acaatgctta aatggtatct
    36661 tgagcggaat ttgagttccc gaatagtttt accgatacat tctgcttcag gcataaccga
    36721 aatttccgcc atacccaccg agcgatattg tgaggaaaag tattcgcctt ttagctcaat
    36781 cgggcgaagt ttgagctgtt cacagcgttg ttggtaagtt tcatcatcga gggcagtatc
    36841 aagcagtaaa atatctttcg gctggaaaat ttcgtttacc gaggcactga cggtaatttt
    36901 tctaaaccgc ttagtgcgtt gaattgcaat gatgtttagc ccttgctcaa tccgtaaatt
    36961 cagttgcccg atagatttgc cgacacagtc tgaatctgct tccaccagca ccattttggc
    37021 tcgctcttta agttgatact cttcaattaa ctgcgacatt gaaaattttt gagcctgact
    37081 gtgagtattg ctttgctcac cattatccaa ccaacggcgg gcaatcagca tatagccgat
    37141 gcccatcact aaaataatta atccaatcgg agtaaaactg aagaaattga agccttcaaa
    37201 acctgatttt actaattcgg aatgagcaac aaggttgggt ggtgtggcaa ttaaggtcat
    37261 cataccgctg ataagtccgg caacacttaa cggcatcatt aaccggcgag gagaaattcc
    37321 cattcccgag caaatggcaa gcaccaccgg aatgaaaatc gccacaatgc cggtggaact
    37381 cataaaagat ccaagcccgg caatacagag cattagcagc accagcactt tggtttcgct
    37441 cgctcccgac acccgcatca accaatcgct gacttggttc gccacgccgg ttcgcaccaa
    37501 accttctccg acaataaaga gcaacgcaat cagcaccacg tttgggtcac ttaagcctgc
    37561 caacacttct ttgactgata aaatattagt caggctaaaa aacagcatta caattaaggc
    37621 aaccacgtcc atacgcaact tgttttggat aaattgccaa atcgcaaata ccaataacgc
    37681 cattacccaa aacagttctt gcttaagaaa atccggcaca aaagagagca acgattgcat
    37741 aaccatatcc tccaaaatag ttagggatag attacaccgc tttaagcaaa gaaaaaagcc
    37801 gataagatca aaaagaaagg aaaaagcaat cacgtacggc gtgaatgctc agtacaagcg
    37861 gttagttttg acgaaatttt tacaatgggc tttccacatt cagttgttcg tcaatttcag
    37921 ttaccgccaa aatcaggctt gaacgtacca ttttttccaa ccgcatttgc tgcatttgaa
    37981 agagcatcga atctttattc gctgcactcg ctttcatatt cagcaattca ttgataggca
    38041 aaaaatcaat atggtgcaaa tctttggcaa atttcactac cgccgggtga gaaaatgcga
    38101 actcgtcttc ttcctcattc aaatgctgtt tgacttcaag gaaaagcgag atatcttcaa
    38161 acactttagg tgagatcacc cccaacccaa gcaacacttt taaacgtact tcaatgtcag
    38221 ccagcggtcc ttgatgttca aacaaggaat ccaccacgga ttttaacgca aagtccgttt
    38281 tgcgaaacac tcgttcaatc aactgttcaa ccgctttggc aaagcgttga ttggcaatgc
    38341 taaggaaacc acgcagggtg gtttcctcac tgagtttgtc gatgtaatcc atcatagtgt
    38401 caagaattat tgatataatt ccaccacttg agcaatgacc gcttggtcgg ttaaaccggt
    38461 gtatttttcc accgctgccg ccacaccgtg atttgcaata aattcggcaa gttcgaccgc
    38521 ttgtgggtct tcctcattgc gatattgcaa tgccatcacc acgcctttga ccaagttttg
    38581 atacggtaag ccatattcca acgtgccacg caacggtttg atcaagcggt cgttttcgct
    38641 cagtttgcgg attggctcac gccctacacg gtttacgtca tcgtttaagt acgggttggc
    38701 aaaacgtttg aggatttttt cgatatacgc tgaatgggct tgtgggtcga agccgtaacg
    38761 tttaatcagc acagcaccgc tctcttccat tgtggctttc acctgagttt tgatttcctc
    38821 aatcgcaatc gcctctttaa tccatttcac gcccgcttgt ttgcccaagt aggcacagat
    38881 taaatgcccg gtgttcaggg tgaacagttt gcgttccaca aacgccatca ggttatcggt
    38941 taattccatt cctttgatgt ttggaatgtc acctttgaac tgggtttgat ccacaatcca
    39001 ctcgctgaac tcttccaccg tgacttccaa cggatcagca gggttcggct cggcaggtgg
    39061 tacaattctg tccaccgcac tatcaacaaa accaaccact ttttcaattt ctgcttgctg
    39121 ctcggcagtt aaatgctcaa aaattttacc tttaaagaaa gttgtgccac gcaccatatt
    39181 ttcacaggcg ataatgttca gcggttgggt gttgccactt tccacacgag ccactaacgc
    39241 tttggcgaac agtggggcaa taaagccaag cacattcggg ccgactgcgg tggtaattaa
    39301 atcggtgttt ttcacttgct caatcacggc attttcgtct ttcgagttaa ttgccgcaat
    39361 gtttttgaca atttccacac ggctgtcatc gcccacgatt ttcacgccgt attgcttgtt
    39421 ttggttgatt tggtcgattt gagtttggtt aatatcggca aaagtcacga aaatgcgagc
    39481 atcagcaagc aatttgccga taaagccacg cccgatatta ccggcaccaa aatggagtgc
    39541 gttcattgat gattgttcct ctataaaacg taggggcggg tcctgtgccc gccctaaatt
    39601 ttgtaggata atgggcgggc acaggacccg cccctacaca acagggtgat tatttagata
    39661 ataatgctaa cactttttcc acgtcatttg ttgaggtcag tgttttcatt gcttgttcat
    39721 cgtccagtgc gttggtaatt gcacttaaaa tttggatatg gtcgttgcct tttgctgcaa
    39781 taccgaccac cagtttcgcc acgccgtctt cttcatcggt gaagcgaacg ccgttcgggt
    39841 attggcagac cacgataccg gttttcagta cgctgtcttt ggcatcagat gtaccgtgtg
    39901 gcacagctaa gccttcgcct aagtaagttg aaaccatttg ctcacgggcg aacattgcat
    39961 ctacatagct tggttgaaca aagcccgctt taactaactg ctcaccggca aagcggatcg
    40021 cttcttcttt actgttagct tgtaagccta aaaagacttg ggctgcttgc aattttaacc
    40081 cttcggcttg aggttcttcc accgggtttg caaaattttg tgtattttgc accgcttgtt
    40141 gtggctggtg gttagccagt tttgccacta agctgtcata gaacgcactg tctaagaagt
    40201 tagtgagcga taagtgttga gccgttgcca cacgttgtgt tgcacgagcg gttaagtctt
    40261 tgtgggtaat caccagttgt gcgtcttgcg gtaagtcgtt gatcgctaag ttttgtactt
    40321 caatgtttaa acctgccgct tgcacttttt tgcgtaacat actcgcaccc atcgcacttg
    40381 aacccatacc ggcatcacac gctacataga ttttgttgat gttaccattt actacgcctt
    40441 tgctttctgc tttcatcgct tgagtttgtg cttgtgcatc ttccaatgag gcttcacctt
    40501 tttgggtttt gagtaagatt gacgcaatcg caaaagtcac ggcacaagaa agaatcacgg
    40561 aggcaacaac tgcaaagtga gcacccggtg cggtcattgc taaaatcgca aaaatagaac
    40621 ccggggaagc cggtgcgatt aaaccgccac ctaataatga gttggttaaa acgccggttg
    40681 caccgcctgc aatcactgca agaattaagc gtgggctcat taacacatac gggaaataaa
    40741 tttcgtgaat accgcctaag aagtgaatga ttgacgcact accagcggtt tgttttgctg
    40801 tgccacgacc aaagaacata taggcaagca agataccaaa gcccggaccc gggttcgctt
    40861 caatcaagaa cagaatagat ttgcccactt cttgtgcttg tgctgtaccc aatggcgtga
    40921 acacaccgtg attgatcgca ttgtttaaga ataggatttt cgccggttca acgatgatag
    40981 aggttactgg cagaagacca gcttcaacca acgcccccac acctgcacct aatgccgcag
    41041 agatttgggt gacgatacct ccaatgaaag caaatgaaag cattgccaaa atcataccga
    41101 tgatcccgac cgagaagttg tttaccaaca tctcaaaacc gctttttact ttgccgtcaa
    41161 tcgctttatc gaaggttttg atcgcccagc cgcctaatgg acctacaatc atcgcaccta
    41221 agaacatcgg gatttcagaa cccacgataa tacccattgt agtaatcgca cctacaaccg
    41281 caccacgctc accaccgact aatttaccac cgctgtaacc gattaacagt ggcagcaagt
    41341 aagtaatcat cggaccgacc agtttagcaa aagtctcgtt cggcaaccaa ccggttggaa
    41401 taaacagggc ggtgataaag ccccacgcaa taaaggcacc gatattcggc atcaccatat
    41461 tcgataagaa acgcccaaaa ccttggactt tcacttttaa attagacata gaaacctcaa
    41521 aaaaggagag aaaattaggg ttgaaaaaat cgtgcttaaa ttagcaccac tttcaaaagt
    41581 tacaaaaatg tttctctcag aaatgtgaag tagatcacat taaatttttt tgggcagatt
    41641 tgaaaatgtg atctatctca catttttgga gtaaagatgg cgtaagcgtc ctcgcttgtg
    41701 ccaagcataa ttctattttt gcgatctaca tcgaaaaaat aaaatgaatt gctaacccta
    41761 actgttcacc tatattacta tcagcataaa ctgcacttta gaggttcata atgagtagaa
    41821 aatataagtt ttatgagaag agcggagcct attttgttag ttttgcaaca gtttattgga
    41881 ttgatctatt tattcgagaa gattattttc aaaccattat ccaatcattg aattattgtc
    41941 gaaaacaaaa agggatgatt ttatatggct actgcattat gccaagccat attcatttat
    42001 tatttcaagc aaaagaccaa aacccgtcag atttaataag agattttaaa acatttacat
    42061 ctaaatgttg attcagcaaa ttaaaacaaa tccccaagaa agtagaaaag aatggttatt
    42121 atggatgttt actcgggcag ctaaacaacg aaataatgtc aagcaatacc aactttggca
    42181 acatcataac caaccgataa caatctattc tcagaaattt tttgatgaaa agctaaacca
    42241 tattcacaac aaccctatcg taagcggttt tgtatgcgag gcatttgaat ggaaatatag
    42301 cagtgcaaga aattatgcta acaacttacc tgttttatta gatattgata tatgtcagtg
    42361 aacggcacaa gcgtaaacgc ttgcgccatc gttacatcta taaattaact agagaactcc
    42421 atcaatcccg ttactttacc ctcatcattc actgcaatta atgagtgaat tttcagctct
    42481 ttcattaaat cttcggcttt ggctaaaaat tcggtatcgt taatggtttt tggattacgg
    42541 gtcataattt cgtcagcggt tttatttagg ctctccgccc cgaatttcgc taatgtgcgg
    42601 cggatatcac catcggtaat aatgccttcc aatttatcgt cttgcataat taccgccacc
    42661 cccatacgcc cttcgttcat cacagataaa cattcggtaa aggtggtgtc taagctggcg
    42721 gttggcactt tacgcaccat cacatctcgc actctgttca ataatttacg accaagactg
    42781 ccacccgggt ggtagcgggc aaaatcttca gggcggaaat cacgggcttt cattagcgca
    42841 atggctaacg catcgcctaa agccatcgtt accaaagtag agctggttgg agctagatta
    42901 ttcaggcagg cttcacgctc tacaccaata tttaaaatca catcggcatt tcgcccaagt
    42961 gtggagtaag gattacctgt catcgcaata attttattgc cgaaattttt caggcttgga
    43021 atcagtttat tcacatcatc agtttcacca ctgttagaaa tcagaattac catatcaatc
    43081 ggtttcagca ttcccaaatc gccgtgaaaa gcctctgtcg ggtgcaagaa aaagctcggt
    43141 gtaccggtgg aggcaaaagt tgccaccatt tttttgccaa ccagccccga ttttccaata
    43201 ccgccaacaa ccactcgccc ttgacaagcg agtatcatat ttaccacctc attaaattct
    43261 tcagaaagtc gatggtttag cgtgataatc tgctgagcat agaggtttaa cgtttctttt
    43321 gcactgtcta aatgattcat ttttacgccc ttatacaact aacagctcaa tccctttcgc
    43381 tttaatctgt tctctcattt cttgagataa tccttcatcg gtaatgatag tatgaatttt
    43441 ttctaaccca cacacaatat tcggactttt acgtccaaac ttactggagt cggcaagtaa
    43501 gacgatttta tttgccgcat cacacattag cgaactgact ttatatactt cattgaaagt
    43561 cgttaatcca acgtctaaat ctagtccgtc tgtgccaata aagagtatgt caaaatttga
    43621 accaataaaa gcggattcag caaaataacc gtgaaatgaa gctgatttct cacgaaatgt
    43681 accaccggaa atcagtaagt tataggattt attgagtttc aaaatctcat tgaaaatagt
    43741 taaactattt gtcattaaag agaggttatc aaatgctttt aaatggggaa tcatttgtaa
    43801 cactgtgctg cctgcatcaa aaataataga gtttccctca ttaattaact ctgcagcttt
    43861 ttgcccgata gcttgctttt gttgaagatt aatgccggtt ttctgtgcaa gcggtttatc
    43921 gtctttgtcc tctttattga ttttctcttc ccgttcaaga atttcttcat caattaagac
    43981 tacactgcca taagtacgca agactttctt atcttcttca agtgaagtta aatctttacg
    44041 aatggttgca ccagttagct taaaatagtc tgccagcacg tccacttcgg ttctaccgtg
    44101 ctgagctaaa taggctaaaa tttgctgtct tctttcaaaa ggtttcattg ttcctccaat
    44161 ttagcaaaga ttggagcgag ctaatctgtg ctaatgctgt tttaattttt caatgacatc
    44221 tagtagcgat gccattcttt tatcggcaat tgaaaatttt tcattttgat aatcggtatt
    44281 caccaaaaat gtagttaaat tagcggcttt ggcggcaatt aagccggtta cactgtcctc
    44341 aataacaata cactcttgtt tttcaatgcc taattttttc actgcactca aatagaccgc
    44401 agggtgtggc ttgccatatt cttcgtccat tgcactgcat cgaatcggga aataatccca
    44461 cagttttaag cgatcaaaca ccgctttaat caccaccggc ggcgatgagg ttgcaacggc
    44521 taacttgatc tgattagatt ttaagaaatc caataattca tataaacccg ttaatgcttt
    44581 gccgtgttgt tcaatcgcag cacaaccgtg tgccaaaatg gcttcactta atgcttggtt
    44641 ggaaacagat aactgaaatt ttttaatcca agtgtcgctc aactcatcaa tccgcttacc
    44701 tctggtgagt tgttcgcaat cttgctcggt gatattaata cctaagtcgg ctaatactgc
    44761 aatttgagcc tctgcccatt ggggttctga atcaatcatt accccgtcca tatcaaagat
    44821 gacactattg atctgcatat ttattctcca ttatctcatt tttaactaaa aaaatattca
    44881 aaatgaaata aaaaatcgca ttatttttga tctgagcaac tatatccgga agatatcgcc
    44941 acttttaagg caaattgtga acgtttatcg cttggaaaga ttttttccgg cacaatttga
    45001 tcaagagaca aaccaatcac agacgctaat ttctgcggtc tggcaaagac ggaaaatcct
    45061 ttcatacaaa ggctatctac cacttttttc tcatcatcaa acgccaacac aataaccgat
    45121 ttaggattaa aacgaccact attacgccca accgttactt tgcctttctt actgatttcc
    45181 ataaaggctt ggttaaaggc tttaatttga agccaaccca aaacggcttg taacagccac
    45241 attatcattg ccaatataat cagaagtgta attgaatcca tcattgctcc ttaataaaaa
    45301 gccacagagc ctaaacgtac ctgcgatttc aaaacaatac gctttcccct gtggcatatt
    45361 aaccggtgtg gcgaattaac aagcggttta ttttagtcat tttttgcaaa ttgttgtaaa
    45421 aaaatcgaca aatttgaccg cttgtttgct tagaacatta cctgaccacc ggtaatatta
    45481 atagactgtc ctgtgcaata agctgcctct tcgccggcat agaattttaa gacattcaac
    45541 acatcttgat aatcacagcc acgttttaaa ggcactttat caatataaac ttgctctact
    45601 tcgctttccg gaatgccgag ttttgccgca tattgcggaa ttaacgattg gaacatcggc
    45661 gatttcaata aattgcctaa cattaatgaa tgcacggtaa tgcctttatc tgccaagtct
    45721 aatgctaacg attgtgttaa accaacacca ccaaatttcg ctgcactata accggaatta
    45781 tacttactcc ctactttacc cgatttagaa ttaatttgaa tgatacgccc tttaataccg
    45841 tcacgaatca ttaagcggga gaagtgtttt gcggttaaga aataaccggt taaattcact
    45901 tttaccgaca aatcaaaatc gtttaagttg aaatcccaaa taggcgatgc tttcgctgtg
    45961 cctgcactgt aaaccaatac atcggcacgc ccgaatacgg tatctgttgc tttagctagt
    46021 gcttcaacgc ttggttcatc agccgcatcg acttgcaccc caatcgcatt tccttcgcct
    46081 tgtttggcat taatgtcggc tgccactttt tgtgcatttt cgccgtttaa gtcagcaacc
    46141 accacacgat aaccggcatc tgccaagcct tcagataaaa aagctccaag tgtttgaccg
    46201 ccgccaacaa cgatagcaac ttttttttca ttgttcataa tgtattcctc taaattttca
    46261 atttgaaatt atttttaatc cgtcattaat cacgcttgat aatcaaggtt gagttctctg
    46321 ttaagccttg cggcggtgtt ccgataacgt gaacgcttcc cggaaattcc gcatcatttg
    46381 ccccgtcaaa acggaaggta atgtgtccga gggcggataa gttttcagat gcaacgctac
    46441 caactgccgt aatcggataa gctacgccat caaattcagc gatatcgcct acttctaaag
    46501 ggctacttaa ttcagatgga ttatgaatga agcagtaatc ttgtaaatct gccggtgcgc
    46561 cttgtttaaa agtgattaac atatcgtctg ttaatgattc ctgagcaaaa ttcccgattt
    46621 tggtaaaggt cgtttgataa ataatcgtca tataaatgtt ctctcgtttt gacaagcggt
    46681 gcattttgca aaaaattttt caaattccac cgcttgtatc gtggttaatt attggtagat
    46741 gaatgcggaa actgcccacg caatcagcac ggtcggtgca ccggttaaaa aacggctgac
    46801 taatactgac ggtacaccca cccgtacggt atcttgtttt gcttccgcca ttgaaagacc
    46861 cacaggaata aaatcacaag cggcttgagc attaatagca aagagtgccg gcagtgctaa
    46921 atgtggcgga atattgccta aaccgatttg cgtaccgact aacacgccga taacttgtgc
    46981 aatcacggct cccggcccta agaatgggga aaggagaggg aaggaacaaa tcaacgccag
    47041 tgtaactaaa ccgattgggc tgtttgccag aggggtcaag ccgtgggcaa tcacatcacc
    47101 taaacctgac gcaatgatga tcccgattaa cgcagaaaca aatgccataa acggtaaaat
    47161 ggttttaagc accgtatcaa tagtgtctcg tccggcttgg aagaataacg ccgccaccga
    47221 tcccattccc ataccgattt ttgctaataa accatcactt tgttcggtga tttttttgct
    47281 ggagtcatac tcttttgccg ttgctgtcgt tgatgaagtt ggttttgctt gctctgttgc
    47341 cacaggcaca cttccatcgg catcaattaa gcgaatattg ttttctttca ccgctgaaac
    47401 ataaatatct tccacaataa attctgctaa agggccggat ttaccggtgg agtgaatgtt
    47461 aatggttgga atacggcgtt ttgggtaaag cccacagcgt aataccccac cgcaatcaat
    47521 aatcgcaatc ccgatttctt ctgccggcgg ttcgccttct ttaaaaccat caaccgcttc
    47581 ccagccggtt aattccacca atttattaac aatcgcaggg cgagtgccgc cggtcatata
    47641 aagcactttt ttgccttcca caacaggtaa tgttaatgga ccaccccaac caccgttgcc
    47701 tttttcaatg taaatcgctt tgttgctcat aatctattcc tctgtatttc agttacttgg
    47761 ttagtgggat aaatgtactt ctctatctaa ggtgatcccc attcgttttt caaagaatgc
    47821 ggtggtgaag tctgttatcc agccacggaa gaaattggta aacataccga ctaataaata
    47881 actgatggct aaaggcccaa gtggtaagcc taaggtggtt aaaccgctgg caatacctaa
    47941 ataaacgaat aattcacccg ggttgatgtg agggaataag ccgttcatag agtggcaact
    48001 ataagaggct gcggcgtagt agcttggttt gtaacgctcc ggtaagaaac gccctaagct
    48061 taatgtcatc gggttacaga aaacgaaagt gccgatcacc ggtaagatca aataacgtga
    48121 aatagggttt ccggcactac gttgagcaag tcgttcaatc cgatcttgcc ctacaaattt
    48181 aatcagggca ttcattacaa ccaataatga aattaagagt ggcaaaatac cgtttatcat
    48241 accgactaag gtttcaccgc ctttttggaa caggccgata aaccattctg ctccgtgtgt
    48301 aattgcttca atcataccga tctccgtttt tcaaaataaa atatttttct ttcatctctg
    48361 ttatgagatg tgcaaatagt aaattatttt tattttaaaa actgtgacag cgatcacaaa
    48421 atgagaaaca actttcaaaa taaattattt tttcatttta aatcaaaaca aaagtgaagt
    48481 ttgaatatta gatgggggaa aaaaggaagg ctaaattaaa aaagctcaaa caataatgtt
    48541 tgagctttgg ttttattcaa tgacttttgc agtatatttg aggtttccga ccgcttgtat
    48601 cagggcttgg ttatccacac tttcttttac caccacagtc gcttttcgct ctttcattga
    48661 ggctttggtg gaaatcacac cttctactgc tcgtagttct ttattgacta aataaacgca
    48721 gagctggcag tacatttccg gaatatggag gacgacggtt ttctctgctt gtttcgtttc
    48781 aatttgagct gttttttctt gtgcgtagct tgaatgaacc aaaccaaaag ccaacagcat
    48841 cgttgcgata tattttttca ttttattctc cgctccacat ttccaaaatg taaggcaata
    48901 cataagggta agttaaaaag aacatcacca ccacagaaac tacccaatac aaaatgacca
    48961 gggttctgcg ggagaagtat ttggtgcaga tgattttgtt ggaaaaattc agcaaccaga
    49021 agccatagcc aaacgcagcg agcgaaatca gcaacatcgg cagttgtaga aactccagtt
    49081 ggtttagctc catcaaccaa ggggaagaga tgccaaacac taaataaacc agtggcccaa
    49141 tacaacagaa tgtggaggtc accgccgaca ctatggcggt cacgcacatt gtgataaatt
    49201 tatggttata actctttaga gatgaattca tagccaaatt ctttcgcctc aaacgagttt
    49261 aacgggtcac cacctacctc agcataaggg tagccaaagt tattcagtgg tgtaagttcc
    49321 ggttgtggat ataaatcgaa atcacgtccg tgattgaagc ctacccagtt catttcccag
    49381 ttgccgaata agtatttcga gaccgcttga acatcagcat catccacgtc ttttttctcg
    49441 gctaaacgca ttttagcgac atcggcagaa tctacaggca cccagccgaa gcctgctaaa
    49501 tagaactctg cacggcagtg ctgcccgccg ctttcattcg ccacgccatc ttttgagcta
    49561 ccaaatgcgg ttttggaata ttgccccatt tttaccgctt gccctaaacg aataccaaac
    49621 acttcacgag caggaatgtt agaggcacga gcaagtgcta caaacaccga gttgatgtcg
    49681 gtacatttac cttttagcac tttggtggtg agaattttct ccacatcgcc atcgccacag
    49741 cctagcaccg agttatcacg ttccatatta tcaacaatcc acttgtggat aagttccgct
    49801 tttttcaacg gattttgctc gttacccaca attttatcgg catattcttt cacaataccg
    49861 tctgttttaa tgtgagccgt tggttttaaa tactccaata catcaacaga ataagtgatt
    49921 ttctccggca tttggtaatt tgccaacgcc ccttgagcca taggctcacg atcttgggtt
    49981 tggatcacca ttttcacttt tagatcacgc tttggtgcat cagtatccca agtggcaaac
    50041 aaggtttttg caccataagc gttattttct gtgatatagg cgtttttgta acttccctca
    50101 aactctatcg attttaccgt ttgataatcg gtatcagacg gcaacggaat ccacaaatta
    50161 gttgttcctt tcgagccttg tggcacaact aaatcataag attgcgtaaa ttcgtaagtg
    50221 tgggtagtgg tgtggaaatt gttctgttga acaggagcag caaaagccgt cgcacagctt
    50281 gaagccacca aagaggcaat aagtttattc attgaaatga tccttattag agtgaaaaaa
    50341 cagttaaaac ttaacatatt aagtattcta actacggatt gaggttgcat attagccaat
    50401 cgagatggga aaagcaatgg gggagatgat tttttagata gtgcaagcgt ccacgcttgt
    50461 actagaaaca aagctaaaat aatcaatagg cacaagcgtg gacgcttgcg ccatcagaga
    50521 gaataacaag cggtcaaaaa tcctcaaaat tttacaaata gattttttgc cctaattttg
    50581 cactttcaaa tacgctttcg atcactttta gcacaaaaat gacgtcttcg agtttgataa
    50641 ttggctcagc attgtgagcg atggcttggt acaaatcatc aaacaagttt tgataactga
    50701 cttcggcatt tcgatagggc tggcgaacca cattaccttc cacttcagtg tgtaaaattc
    50761 cccagttctc cttttcttcg atattccaat ctttgccaat aggttgtacg ccatttttca
    50821 gcaaatcttc ttgattatcg ggagtttgtt tcagataaga gcctaatttt ccgtgtaata
    50881 caaatgtcgg gcttggttca cgagcatatc ggctggcttt cagcaccact ttaaaaccgt
    50941 tagcataata gagctgaata tcaaagttat catcaaccaa tgccccttcg tgctgataac
    51001 gcacatcagc atacaccgcc tccggcttcc cgaaaagata caaagcttgg tcaattaaat
    51061 gtacgcctaa atcatacact aaacctgtac caagctcgcc tgattctttc catactttaa
    51121 catttttctc tttcgcataa cggtcaaaac gaatttcgca atctaccaac tctcccagta
    51181 aattttgctc cattagcgat tttgccgtcg caatatggct gtcccaacgg cggttttggt
    51241 acacataaag cacctttcct tgccgctttg caagttccgc caactcttcc gcctcagcca
    51301 ctgttgccac taacggtttt tcaactaaaa cgtgtttgcc tgcaagcaat gactctttta
    51361 ccattgcata atgggtttga ttcggtgtgg taatcagcac taaatccact tctggcgtta
    51421 aaagagcgtt gaaatcccgc actgtttctg cattcggcaa ccattctgcc gcattgttag
    51481 aggttcgttc atataccttt acaatattaa aacgagcatc ttgtttcaaa aacgggatat
    51541 gaaaaactcg gctggaaaag ccggcacctg cgatggcaat attgatgggt tgcatagaca
    51601 atcctcataa aattttgatg ttatctgctt aaataaacaa gcggtcaaat tttaggaaaa
    51661 ttttgcaaaa aacagataaa atacgaccgc ttgtttaact aatcataggt tttgcaaaca
    51721 atatcttttt cttcacaaaa catttcactg tggtttgcac ggcattgctt ttgtacattt
    51781 aatttggctc tgcctcggct actatgttca ctacgatatt cctgagtaaa tggctttaga
    51841 gtacaaatgt gaacctcttt ggaatcaagt ggatctgaga caccaattat aatcggcata
    51901 gggataccgg cttgccccgt aggagtaacc ggcacgacac agccacttaa tagtatgctt
    51961 aaacttatta accaataacg catatttttc tccttttaaa atgtataata aatcagaacg
    52021 gagcatcttt atcgttacag taagctctta atatcttgcc taatttcttg gtatttttat
    52081 taaaatttcg gcatttaggg cataccaaaa gatgcaactg caaacgcata tgttgttgca
    52141 aacgaagttt ctcatcacaa gactgtgaaa taagttctgt tgcttgcctg catttcattt
    52201 tgattcctct ctaaaccaat tgcgagataa acactcttgt aaacgtaaac gagcacgatg
    52261 aagtaataca tttaagttag agagagaaat ttcacattct tggcaaattt ccgcactact
    52321 catctccaaa tgttcacgca tcataaatac tcgtgcttgc tgggcgggta atttatttaa
    52381 acaaatatca aaaattgccc aaaattcttt ttggtaagtt gattgagcta cccccctcca
    52441 ttcagttaca tcttgatgtt ccaaccaatg atcgtggcga tcgaaaaagg cacttggtga
    52501 ttcttcttcc tcacatagag aactgactgg aatatgtcgt tttcgtgttc tgagtaaatc
    52561 taaaattttg ttctttaaaa tagcaaaaat ccaagtttta agtgcagctt ctcgccgaaa
    52621 agaggctgaa tgcttatagg cattggttaa ggcatcctgt acaacatcct cagctaaatc
    52681 tttatcggct agttgtaggg tggcaaattt aaccatttgc tttctaatct cttctatctg
    52741 tgtagaagat agactcttca tatatctcct ttagggaata cccaataaaa aattacactt
    52801 attttgtaag aattctagat cagctgagtc caaaataata acaacaattc ataaaaaaag
    52861 gatagttcga tgaaaaaatt aacaattcaa gatgttacac ccgaaactat tttctaccaa
    52921 cgccgtaaaa ttattaccgc gttaggttta ggtattgcag cttctgcatt gcctaaagta
    52981 agtatggcag aaacacaaag acacttgcaa tcactacagt ttaaaccgga tccaaataaa
    53041 gggcttgaac tcactccgga aaacaaagta ataggctata acaatttcta tgagtttggc
    53101 gtggataaaa gtgcaccagc aaaaaatgcg gcaaacttca aaaccgatcc ttggacattg
    53161 gaaattggcg gagaagttga aaatccgttt agcttaaatc atcaacaatt gcttaatacg
    53221 tttccactag aagaacgcat ttaccgtttt cgctgtgttg aagcgtggtc aatggttgtg
    53281 ccgtggatcg gctttgagtt agctcgctta attgagatgg caaaaccaac cagtaaagcc
    53341 aaatatgtgg tctttcacac tttatatgat cctgcacaaa tgccggggca aaaaaatcgc
    53401 ttgctaggcg gtgggattga ttatccttat gtagaagctt tacgcttaga tgaagcctta
    53461 aattcattaa cactactatc cgtcggttta tacggtaaaa ccctgccacc gcaaaacggt
    53521 gctcctattc gcttagtcgt gccttggaaa tatggcttta aaagtattaa gtcgattgtg
    53581 aaaatcacct ttgctgaaaa acgcccactc actacttggg aaagtcttgc tccaaatgaa
    53641 tatggctttt atgctaatgt gaatccaaat gttgatcatc cacgttggtc gcaagcatct
    53701 gaacgagtaa ttggtgcagg cgggttatta tccgtcaaac gccaaccaac actaatgttt
    53761 aatggctacg aaaatgaagt ggcaaattta taccgtggct tagatttaaa ggtgaactac
    53821 taatgctaac ctggttacgt atactcattc atcttggctg tttattaccg ctagtttggg
    53881 tagcacagct attatatacg ggtaatgaaa caatattagg tgccgatccg attaaagagc
    53941 tggagcattt tctcggttat ggtgcaatcg tcattttttg tataatgttt ctacttggta
    54001 ttgccctaca atacctaaag aaaaaccagt atcaaatttt acgccgtcca ttgggcttat
    54061 gggcgtttgt atgggcagct ctacatattt caagctatct attgttagaa ttaagccttg
    54121 atgtaaaatt attttttagc gagcttgccg gtcgcccata tttgatttta ggagcagctg
    54181 cttttttcat tctaagcata atggcaataa cttcgctgcc tatgctaaaa cgaaaattag
    54241 gaacacgctg ggggacgatt caccagtggg cttatcctgc attagtattg gcgatggtac
    54301 attattattg gtcggtaaag agcgtaacat tcgatccaat tatcatcgga gtcttagtgc
    54361 tgtttattgt tgctcataaa atacaggcta aatttgcaaa aaaatagcaa aatcacaccg
    54421 cttgcagcag tcaaactaca tacaaaaaat aaggggctgt cctagataac gactaaaac
//
LOCUS       DANLRW010000002        42842 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.002, whole genome shotgun sequence.
ACCESSION   DANLRW010000002 DANLRW010000000
VERSION     DANLRW010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 42842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42842
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.002"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(31..821)
                     /locus_tag="PXA71_000060"
                     /pseudo
     CDS             complement(31..821)
                     /locus_tag="PXA71_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
     gene            complement(818..1519)
                     /gene="lpxH"
                     /locus_tag="PXA71_000061"
     CDS             complement(818..1519)
                     /gene="lpxH"
                     /locus_tag="PXA71_000061"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HDL5104217.1"
                     /translation="MTYYFIADLHLNENQPEITHLFLQFMQEKALLAEAVYILGDLFD
                     FWIGDDEQSELISTVKQAIKTLTTSGTKCYFICGNRDFLIGKRFSEQTGMVILPDYHV
                     IDLFGTSTLLCHGDTLCTDDVKYQQFRKKVHQKWRQAIFLMFPLSWRIRIAEKIRSKS
                     KQEKRDKSAEIMDVNAEVTAQIVAKYNTTQLIHGHTHRQAIHQHNGFTRIVLGDWKEN
                     YASILSVTEQGAEFI"
     gene            complement(1594..2115)
                     /locus_tag="PXA71_000062"
     CDS             complement(1594..2115)
                     /locus_tag="PXA71_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1523 family protein"
                     /protein_id="HDL5104218.1"
                     /translation="MRAILKYFLILVSLSFFIVLGGAVNYAMPSYEDTVVTGMEVRRM
                     DKDGIISKANPADGEVRDVYFLFTEDPETKKVMVYRNEDTGWGLPPYFKFGSADIQAK
                     AQAYANEKQRVQIKYYGWRINWLNEFRNIVSIKPLEEAETVSKPIMSYVLYAVLAFLF
                     FLSVQFIRGIFKD"
     gene            complement(2125..2913)
                     /locus_tag="PXA71_000063"
     CDS             complement(2125..2913)
                     /locus_tag="PXA71_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF/TatD family DNA exonuclease"
                     /protein_id="HDL5104219.1"
                     /translation="MKDLFIIDSHCHLDSLDYETRHKNVDEVIENAKARGVHHFISVC
                     TTVGRFEAMKNLTAHRNDVSLSCGVHPLNVEDEPFDYDKLFQFAQDPKVVAIGETGLD
                     YHYTPETKALQQSLFVQQIEIANKLNKPLIIHSRSARQDTMDMLEQNNAEKCGGVLHC
                     FTEDWAMAKRALDIGFYISISGIITFRNAEELREVVRKVPLDRLLVETDSPYLAPIPY
                     RGKPNQPAYVRETCEYVATLKGVSTEELARITTENVQHLFNIKL"
     gene            complement(2918..3202)
                     /locus_tag="PXA71_000064"
     CDS             complement(2918..3202)
                     /locus_tag="PXA71_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5104220.1"
                     /translation="MYKLSAQALRDQEKLFRYSISQFGVQQTESYFADLKHILNLLAD
                     FPTMGTSAEYIRGGLRMHTHQSHTIYYRIKADHIFIVRILHNQMNHKRYI"
     gene            complement(3195..3437)
                     /locus_tag="PXA71_000065"
     CDS             complement(3195..3437)
                     /locus_tag="PXA71_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL5104221.1"
                     /translation="MARTTSVTLGEPLNDFVNEMVASGRYGSTSEVVRTALRMLEEKE
                     QYLAQLRQAIDDGDASGYATETIDEMMLRVKAELNV"
     gene            complement(3568..4545)
                     /locus_tag="PXA71_000066"
     CDS             complement(3568..4545)
                     /locus_tag="PXA71_000066"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDL5104222.1"
                     /translation="MYPWLESTYQQLTDSFLQGRGHHALLFKTDVGLGTDTLIYKVAE
                     WLLCSQKLRHQPCLECKSCLLMQSNNHPDFHILEPIEDKDIGIDQVRELIYKLQNFAQ
                     QGGNTVVYIRGVDRLTEASSNALLKTLEEPRENVYFLLEAPLQATVLATIQSRSQTWV
                     LYAPQASEVMAWLQTQFPAISTDDLEIALRLCHSRPLICKNFIENDRLQQRKTFLQTF
                     WRFYKSHDVFLLFQAFAQEKELILQQLEWLESFFSDALKAKMAISHGWLNPDLQNGIL
                     PFSQQLTTHGLLKGHQILQQTQRDLTEINAVNPELMLLDCLTKLVLVFE"
     gene            complement(4545..5165)
                     /locus_tag="PXA71_000067"
     CDS             complement(4545..5165)
                     /locus_tag="PXA71_000067"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDL5104223.1"
                     /translation="MRGKFIVIEGLEGAGKTTAHQVILKELEQAGINDVVMTREPGGT
                     PLAEKLRHLIKHETEEAINDKAELLMLYAARVQLVENVIKPALAEGKWVLGDRHDMSS
                     QAYQGGGRKLDRHLLETLKESVLGTFEPDLTIYLDLDPVIGLERARGRGELDRIEQQS
                     LDFFYRTRERYLELTQHNDKAVIINAEQPIEQVTADIQQVIRNWLK"
     gene            complement(5176..6210)
                     /gene="mltG"
                     /locus_tag="PXA71_000068"
     CDS             complement(5176..6210)
                     /gene="mltG"
                     /locus_tag="PXA71_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HDL5104224.1"
                     /translation="MLKKILIALGLAGVIACGGLFYGYQKLTSLAEHPITVQPNQLFV
                     LEKGVSSQKLAALLEEQGIVTHDDADLIPYLMRLYPELSKFKAGAYSLAGLTTVKDLL
                     AHLSSGKEVQLNVQFIEGKTFKIWREQLAKADYLQHTLQGKSEKEIADLLGIPHEKIE
                     GWIAPDTYNYTPNSTDLALLKRAYQKQKTALEQAWKNRAENLPLATPYEMLILASIVE
                     KETGIATERPQVASVFINRLRNNMRLQTDPTVIYGMGDRYNGNIRRKDLEEATPYNTY
                     QIDGLPPTPIAMPSEASIKAVANPDNTPYLYFVADGTGGHKFSKTLNEHNKAVAEWIQ
                     IERKRKNEQK"
     gene            complement(6303..6378)
                     /locus_tag="PXA71_000069"
     tRNA            complement(6303..6378)
                     /locus_tag="PXA71_000069"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6343..6345),aa:Lys,seq:ttt)
     gene            complement(6400..6475)
                     /locus_tag="PXA71_000070"
     tRNA            complement(6400..6475)
                     /locus_tag="PXA71_000070"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6440..6442),aa:Lys,seq:ttt)
     gene            complement(6498..6573)
                     /locus_tag="PXA71_000071"
     tRNA            complement(6498..6573)
                     /locus_tag="PXA71_000071"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6538..6540),aa:Lys,seq:ttt)
     gene            6790..7317
                     /gene="ppa"
                     /locus_tag="PXA71_000072"
     CDS             6790..7317
                     /gene="ppa"
                     /locus_tag="PXA71_000072"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HDL5104225.1"
                     /translation="MGLELVPAGKELPDDIYVVIEIPANSDPIKYEVDKETGALFVDR
                     FMATAMFYPANYGYVNNTLSSDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGG
                     DAKVVAVPHTKLSKEYDHIKDVGDLPALLKAQIQHFFESYKALEAGKWVKVEGWGDVN
                     EARQEILESFERAKK"
     gene            7373..8128
                     /locus_tag="PXA71_000073"
     CDS             7373..8128
                     /locus_tag="PXA71_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HDL5104226.1"
                     /translation="MKFIKKLSYSVFLATVITACATTESINQEAAQSYAQVKTQARQQ
                     NAIDNSSATAKRIHTVFHKMKPYAERANQTGVPFHWEITVLKSDELNAWAMPGGKMAF
                     YTGLVERLNLSNDEIAVVMGHEMAHALKEHGKSDRTVSAITSIVGAIADVAVTASTGV
                     STEGLLSTGVDLIATKPFSRSQETEADEVGLILMAESGYNPSAAPNVWVKMSKANGDS
                     GLSIFSTHPSNADRQENLARLVPEAMKIYNARK"
     gene            complement(8192..9223)
                     /gene="trpS"
                     /locus_tag="PXA71_000074"
     CDS             complement(8192..9223)
                     /gene="trpS"
                     /locus_tag="PXA71_000074"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDL5104227.1"
                     /translation="MSKPIVFSGVQPSGELTIGNYLGALRNWVKMQDDYDCVYCIVDQ
                     HAITVRQDPESLRKSTLDVLALYLACGIDPNKSTIFIQSHVPEHAQLAWVLNCYTYFG
                     EMGRMTQFKDKSARYEENVNVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDI
                     ANRFNALYGKKDSEGNLIEPVFAVPEVFIAKSGARVMSLLEPTKKMSKSDDNRNNVIG
                     LLEDPKAVAKKIKRAMTDGDEPPVVRYDVQNKAGVSNLLDILSAITGKTIAELETEFE
                     GKMYGHLKTEVADKVSELLTNLQERYHHYRQDEALLEKIYREGAEKARAQAKATLDKV
                     YELVGFVRY"
     gene            complement(9350..9682)
                     /locus_tag="PXA71_000075"
     CDS             complement(9350..9682)
                     /locus_tag="PXA71_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDL5104228.1"
                     /translation="MKRGDIYWLDLDPTLGHEQSGFRPVVIVSATAFNLASKLPVVVP
                     ITNGGAFAERLGFAVSLKDAGLKTTGIIRCDQPRTVDIAQRHGKFIEALPESLLDEIM
                     ARVSVIFE"
     gene            complement(9679..9939)
                     /locus_tag="PXA71_000076"
     CDS             complement(9679..9939)
                     /locus_tag="PXA71_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5104229.1"
                     /translation="MPTIALRQVGGSVAMVIPPAFLEALKLSVGSKVDLSLNDNQLVI
                     NPARPKVKYSLEELLRQSDFEAARNEESQSWLSEPAIGKEIL"
     gene            complement(10009..10677)
                     /locus_tag="PXA71_000077"
     CDS             complement(10009..10677)
                     /locus_tag="PXA71_000077"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HDL5104230.1"
                     /translation="MSKKYKVIGFDLDGTLINTLPDLTLVANSMFLEAGLPTVTQEKV
                     LTWIGKGADIFFQNAVAHTGRIFQADELVKMRVSFDKYYATYVCEESTLFPNVKETLE
                     ILKANDYPLVVITNKPTKLVEPVLSAFGIYHLFDETLGGQSLPKIKPHPDPMFFICEK
                     FGITPSELLFVGDSENDVIAAKAAGCDVVGLTYGYNYNVPIEQSNPTFVTSEFKDVLK
                     IVGL"
     gene            complement(10764..11561)
                     /gene="lgt"
                     /locus_tag="PXA71_000078"
     CDS             complement(10764..11561)
                     /gene="lgt"
                     /locus_tag="PXA71_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDL5104231.1"
                     /translation="MNEQFIQFPQISPIVFEIGPIALRWYGLMYLAGFAFAYWLGMRR
                     AKNSNGVWTTEQVDSLVYTCFWGVVLGGRIGDVFFYSFDRFLQDPLYLFRIWEGGMSF
                     HGGLIGVIVAMIWVSYRQKRNFWQTADFIAPLVPFGLGMGRIGNFINDELWGRVTDVP
                     WAVLFPSGGYLPRHPSQLYEAFLEGVVLLFILNWFIQKPRPAGAVSGLFLIGYGTFRF
                     IVEYFREIDHNVNTTADLITRGQLLSLPMIIGGILIMAWAYKVNKVK"
     gene            complement(11569..12357)
                     /locus_tag="PXA71_000079"
     CDS             complement(11569..12357)
                     /locus_tag="PXA71_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL5104232.1"
                     /translation="MTILLSCLFLGVFVGFLAGLFGIGGGLIIVPSLVFLLPMAGVPP
                     EYIMSTALGTSFSTIIITAFASAQRHHKLGNVDIQTSKYFIPALMVSVFLSGLVVSRL
                     DPQLMSRIFAVMVLYLAGKMIFSIKRAPKNKPLTVQTTIIGGSIIGALASMAGIAGGA
                     FIVPFLNDRGLEMKRAIGTSSFCGAFLGLSGTISFIVSGWGLEGMPDYSLGYVYLPAL
                     FGITATSFFTSKMGASAANALPVPMLKKAFAVLLVCIAINMFLK"
     gene            complement(12359..13003)
                     /gene="rppH"
                     /locus_tag="PXA71_000080"
     CDS             complement(12359..13003)
                     /gene="rppH"
                     /locus_tag="PXA71_000080"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HDL5104233.1"
                     /translation="MIDFDGYRPNVGIVICNKHGQVLWAKRFGQNSWQFPQGGINEGE
                     NIEAAMYRELYEEVGLSKKDVRLLWASKYWLKYKLPKRLVRNEGSGPVCIGQKQRWFL
                     LQLIGDESLINLKTTKNPEFDGWRWVSFWYPVRQVVSFKRDVYRKAMKEFAQVLQNNI
                     QKATDDKTGEKPRIERGETSPHTYKKTSQDSAKAYKREARKPYRPWHQHNQKGK"
     gene            13615..14760
                     /gene="lldD"
                     /locus_tag="PXA71_000081"
     CDS             13615..14760
                     /gene="lldD"
                     /locus_tag="PXA71_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent L-lactate dehydrogenase LldD"
                     /protein_id="HDL5104234.1"
                     /translation="MIISSANDYRRAAKRRVPPFMFHYADGGSYAEQTLRRNVSDLED
                     IALRQRVLKDMSQLDTGIELFGEKLSMPVTLAPVGALGMYARRGEVQAAKAADNKGIP
                     FTLSTVSICPIEEVAPAIKRPMWFQLYVLKDRGFMKNALERAKAAGCSTLVFTVDMPT
                     PGARYRDMHSGMSGPYKDIRRVLQAMVHPFWAWDVGIHGKPHTLGNVSNYMGKPIDLN
                     NYIGWLTDNFDPSISWKDLEWIREFWDGPMVIKGILDPEDAKDAVRFGADGIIVSNHG
                     GRQLDGVLSSAKALPSIADAVKGEIKILADSGIRNGLDVVRMLALGADCTMIGRSFVY
                     ALSAAGQAGVENLLDIFLKEMKVAMTLTSNAKISDIGRDALVDLSNL"
     gene            complement(14814..15083)
                     /locus_tag="PXA71_000082"
     CDS             complement(14814..15083)
                     /locus_tag="PXA71_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104235.1"
                     /translation="MLSEERFGFFYIFIFIYFSLLSLSIGYIRPELRTTYDYLEIENK
                     RYYVLSIHRNNIYVLGEKTKDNDEFLFFNQDTLKYYRINITKMPN"
     gene            complement(15158..15544)
                     /locus_tag="PXA71_000083"
     CDS             complement(15158..15544)
                     /locus_tag="PXA71_000083"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104236.1"
                     /translation="MTNQKFINSSLTLAFFTLISFSTAYCYAWGIAAFHGYPWWHVEV
                     GNAGIARALAYVFGTFLTIFLFYLIGYALVNKVFKLHYFKYLGWLRVSVLVTIFSLPV
                     MISFYLFIGKVPMYLHLLYLGTTTSI"
     gene            complement(15797..16627)
                     /gene="fghA"
                     /locus_tag="PXA71_000084"
     CDS             complement(15797..16627)
                     /gene="fghA"
                     /locus_tag="PXA71_000084"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HDL5104237.1"
                     /translation="MQQFENYRCFSGEQQVWQHFSASLNCEMKFAIYLPQSAKTQKLP
                     VLYWLSGLTCTEQNFITKSGFQRYADEHHLIVVAPDTSPRGVNVANDEAYDLGQGAGF
                     YLNATQGEWTTHYQMYDYIVSELPTLINAHFPTNGKQSIFGHSMGGHGALTIAFKNPG
                     QYQSVSAFAPIVAPTQVPWGQKAFLAYLGEDQTAWKAYDSVALLEKYRPSLPILIDQG
                     SQDSFLSDQLKPEIFCETADRLGIPYQFNLRDGYDHSYYFISSFIGEHIAFHAKHLKD
                     "
     gene            complement(16707..17765)
                     /locus_tag="PXA71_000085"
     CDS             complement(16707..17765)
                     /locus_tag="PXA71_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HDL5104238.1"
                     /translation="MAYPIKSYATFSATTPLAPHSFERRELLEDDVLIDILYCGVCHS
                     DLHMARNDWGWTQSYPLVPGHEIIGRIIKVGKNAKKFQIGDLVGVGCMVDSCRECSPC
                     QHGLEQYCEVGNIGTYGGIDRFDGTPTQGGYSTCVVVSEDFVLKVSENLDTKAVAPLL
                     CAGITTYSPLRHWNVKAGSKVAVVGLGGLGHMAVKLAKAMGAEVTLFTRSLGKADDAY
                     RLGASRVVLSTDEKQMADVANTFDLIIDTVPYTHDLKPYIPTLALDGTLVLVGLVGEL
                     EQTINTVPMILGRRSISASVIGGIQETQEMLDFCAEHNIVPDVEMIDMQNINDAYERM
                     LKSDVKYRFVIDMGSLKG"
     gene            complement(17952..18887)
                     /locus_tag="PXA71_000086"
     CDS             complement(17952..18887)
                     /locus_tag="PXA71_000086"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03571 family LLM class oxidoreductase"
                     /protein_id="HDL5104239.1"
                     /translation="MNTLSPIFSQVFGQNQLTLGLIAPFMGYQNHIPDNLTTIADNAR
                     LAENLGFSALWVRDVPFYDPHFGDVGQGLDPMVTLGFLSAHTQNIALGTAGLIAPLRS
                     PIHIAKMATSVDSLSHGRFLLGLSSGDRPVEYPAFGADFASRSERFRESIDLINTLTE
                     QDFPHFKGKHYADLTDNLDLLPKPKHRLPIVAIGRARQEMDWLANVPDAWIWHGVNPA
                     DTANIINTLADLRQKDTPTAFGYAQFVEVLDDKNAKAQLFNNIYLRGGAKGLADFWAK
                     EQEKGVKHLALNLKPTQRPADEVLTELAEYALTQF"
     gene            complement(19167..19478)
                     /locus_tag="PXA71_000087"
     CDS             complement(19167..19478)
                     /locus_tag="PXA71_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5104240.1"
                     /translation="MSETEKQAINAPNAVMNGYLTMHYPDWFKPDGIYFNDGAFESFE
                     SSHKLTKDGKIRLVPTAGHTLGHLAVVVDMGEHYILIGGDASYSEQDMLAGNIDGVCN
                     A"
     gene            complement(19485..19877)
                     /locus_tag="PXA71_000088"
     CDS             complement(19485..19877)
                     /locus_tag="PXA71_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5104241.1"
                     /translation="MIKVHCLTTGWVQIKIHHQVARFFARPARVLDVLTDKKWSPKLP
                     IGCWLIEHDDGLILVDTGESSRANDKGYQPWWHPFMQFCERRGVKKHEEVGEILKANG
                     FDPLRIDTVVMTHMHGDHAGGLPNFPNS"
     gene            20009..20569
                     /locus_tag="PXA71_000089"
     CDS             20009..20569
                     /locus_tag="PXA71_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HDL5104242.1"
                     /translation="MNDLRVIKTHLAIQNALIELLDEKLFEKVQVQEIIEKALINRTT
                     FYRYYSGESDLVGKLIKEVKAEYQDLLKKRFESGNLLRFMQTIGNRLLEKRRLILALW
                     QIKTPRHHLYDDMHMLLKNAFIAHAKRITSDDKNWAEKNWDYQAHIFATIALESHKYY
                     FEQGKLLPIPQVFEEWIEMVQVLKSV"
     gene            complement(20635..21624)
                     /locus_tag="PXA71_000090"
     CDS             complement(20635..21624)
                     /locus_tag="PXA71_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HDL5104243.1"
                     /translation="MSKQIQFTKTGSPDVLQIVDVAIPAPKAHEVQIQIQAIGLNRAE
                     MMYREGAYVIDPVFPATLGYEGAGVIVAIGEGVNEVAISDKVSIIPSFMFTEYGTYGE
                     IVNMPKHAVVKHPDNLSMEQASASWMAFVTAYGGLIEFGKVQKGDFVVLGGATSSVGL
                     ASIQIAKMQGATVIALSRTHAKGDVLLEKGADFVIATSEDDVTAKLFEITNGKGVNVV
                     FDPVGRKEAAKIINAMAQDGRYIIYGALSHDDIAVPVFPILGKHLTVRGYELFEITTV
                     PEKLAQAKTFVYDGLASGQLRPEIDKIFAFDEMVKAHEYMASNQQIGKIVVKV"
     gene            complement(21838..22755)
                     /locus_tag="PXA71_000091"
     CDS             complement(21838..22755)
                     /locus_tag="PXA71_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5104244.1"
                     /translation="MTFIIGILAGVLIAFQSAINARLRMHVGAAFLTSFVSFSVGLLF
                     LLGLSLIMQQTPAFSLDNLGNVPLWAWTGGLLGMVGLTANVLIFPKLGGVQTAVMPIL
                     GQVLMGVLIDTFAWLNSPYIAFTASRLFGIGLVLFGVWIAVVLPHLSGLKRKENANLW
                     LWRAVGILGGTALATQAAVNGEFGRQPGSSLGAATVSFGVGAIGLLLVVLFYEKSLPK
                     LCQPTEGKPFWIWSGGILGSLFILAGVWLVPQIGTGSVVMLVLSGLICGSLLVDKFGL
                     FGITQKPILPLQIIGVTLLLAGVAFIRLL"
     gene            complement(22891..23550)
                     /locus_tag="PXA71_000092"
     CDS             complement(22891..23550)
                     /locus_tag="PXA71_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003672168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5104245.1"
                     /translation="MQFFNKEDVINAFHYRASTRSYDGSRKIPAEDFNYILELGRLSP
                     SSVGSEPWQFLVLQNPELRQKIKPYCWGIPTMETSSHIVVILAKKNARYDSQYFSEIM
                     DRRGLQGEAREKAMAVYKKFQEKDIGILDSERSLFDWASKQTYIALGNMMTGAALIGV
                     DSCPIEGFAYQEVNDILAAEGLFDPSEWGVSVMCTFGYRDKEIRQKARKDFETVVKFI
                     E"
     gene            complement(23735..24799)
                     /locus_tag="PXA71_000093"
     CDS             complement(23735..24799)
                     /locus_tag="PXA71_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavin oxidoreductase/NADH oxidase"
                     /protein_id="HDL5104246.1"
                     /translation="MAKFRKLFTPFNIKNLALKNRVVMPPMCQYSATNGVPNDWHFVH
                     YTSRAVGGVGLIIVEMTNVAPNGRITPNCLGLWNDEQQQAFKKLVDSVHAQGAKIGVQ
                     IAHAGRKAQDEPDAVAPSAIHYGELDYAGQNLITPRELTTDEVKALVQAFKDSVKRAV
                     EAGFDTIEIHGAHGYLIHQFYSPKSNQRSDEYGQDKMLFGEQVIQAAREVMPSEMPLI
                     VRISAQEYGENGFGLDYGLQVAKRFADAGADVLDISGGGDGVLHAGNHPEFYAGYQVD
                     FARQVKLATGKPVIAVGMLDNPAVGDHILGMGDADLVAVGRALLRDPYWVLNAQYDQN
                     AADSSEMQFVPKQYERGLFM"
     gene            24890..25798
                     /locus_tag="PXA71_000094"
     CDS             24890..25798
                     /locus_tag="PXA71_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5104247.1"
                     /translation="MSDIRTLDFNLLKAFVVLLDECNVSRAAQRLSITQPAMSGILNR
                     LRESFNDPLFVRVQHGMQPTDRALQLGQTARNILQDISSMLQPPILEPEHLNMTLRIA
                     AMDYVQQIIALPLILRLRRLAPNVKVALLPVQGQNIKTLFEQKKIDLALVSRQHLSTD
                     TLKTVLYEERYVCAMSKTHPMAQTPLSLDQFCNLPFAMLSYNGGEFSGATDLALQKIG
                     LQRKVMVSVNHISLLPQLLQGSDLVAVLPERLAKTLPNVYLQPPPIEVEGFTMMMAWH
                     ERTEQDTAHRWLREVLQGVVKPKQAL"
     gene            complement(25868..26419)
                     /locus_tag="PXA71_000095"
     CDS             complement(25868..26419)
                     /locus_tag="PXA71_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5104248.1"
                     /translation="MAKQIAVLIGSGSKTSFSHLTVRHLQKMAPASIQLNIVDIADLP
                     LYDRDLDENSPAQYTRVREAVAVADGVLLVTPEHNASFSAMLKNAIDVVSRPMGQSKW
                     IGKPAGIVTVGASPAGGVRAADQVRTITSGSFVNMPTLPFALNVGNLFTGVFDEQGEI
                     ASETLKSSMQNFINAYAQFVEKY"
     gene            26611..27972
                     /locus_tag="PXA71_000096"
     CDS             26611..27972
                     /locus_tag="PXA71_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HDL5104249.1"
                     /translation="MLFLNKIKQLFIFAFTLVLSACSLVVYKPVETIKQVNVERGYRQ
                     KNVIAESAKDGNIVVIMFSGGGTRAAALGYGVLEEFKKVRVKETNKGNTLLENIDIAF
                     GVSGGSILATYFALEGKDIIPKFADRFLKANFQKDIITEVFSLSNLPRLSSPQYGRGD
                     LLQERLNFALYHGKKFGDLVKNRKGPFAVISATDMNIGQKLTFTQETFDGLCLNLNDL
                     EISRAVAASSSVPLIFAPLTLNNNGGNCHFSMPQEFSAREKAIDGLITKNIEETNHIL
                     SLYQDSKERPFIHLVDGGLTDNLGLASVLEISDVMGIEEMYQYIHQLRVKNIVVINVN
                     AQNEVSSEIDKTANVPGVADVVNTIVNVPIDRTTQINLQRYRQFTDGWNEYANKQPSK
                     IEMHFVSLGLKELPDGDLKKDVLNIATSFYLPEEDVDKLREAARVLLQQSQEYNAALK
                     TLQ"
     gene            complement(28020..28517)
                     /gene="rraA"
                     /locus_tag="PXA71_000097"
     CDS             complement(28020..28517)
                     /gene="rraA"
                     /locus_tag="PXA71_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HDL5104250.1"
                     /translation="MRIDTSALCDLYSDQVDVVEPIFSSFGGASSFFGKITTVKCFES
                     NGLIAEVLEEEGEGRVLLVDGGGAVRRALIDAELAQLAVDNGWEGIIVYGAVRQLDIL
                     ERLDIGIHALAPIPVGADNTDIGEVDTPVNFGGVTFFPEDYVYADLTGIILSQELLDL
                     NDISE"
     gene            complement(28615..29517)
                     /locus_tag="PXA71_000098"
     CDS             complement(28615..29517)
                     /locus_tag="PXA71_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL5104251.1"
                     /translation="MTEKVTETAPNIDVVAETEKVIHKVSNMNIETMLNEWIIPYGTK
                     ILLAIAIFVVGKFLARLISRLLGKAALKSTKDEMLQSFIVSISYFLLLLIVVIASLSQ
                     IGINTSSLVALIGAAGLAIGLSLQNSLQNFAAGVMLLIFKPFRKGDLIETGGMTGVVE
                     QMGLLVLELRTGDNKTVLLPNGKVFSDSIINYSNNPTRRIDFTFDISYESNLKEAKEI
                     IQRILDANTYVLKDPAPVVAVGALAPHSVQLVVRPWVQTPNYWAAYWEIIEQVKLAFG
                     EAGISIPYNQMELHIKSGSLENKA"
     gene            29626..30588
                     /gene="rluC"
                     /locus_tag="PXA71_000099"
     CDS             29626..30588
                     /gene="rluC"
                     /locus_tag="PXA71_000099"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HDL5104252.1"
                     /translation="MTTEKVISAGVQFFTISEDEAGQRLDNFLLAKLKGVPKSLIYRI
                     VRKGEVRVNKGRNKPEYKLQPDDLVRVPPVRVAEKNEAPISTKLNKVAELESQILYED
                     ESMLVINKPSGIAVHGGSGLSFGVIEALRALRPQARFLELVHRIDRDTSGILLVAKKR
                     SALRSLHEQLREKVVQKDYLALVRGQWQAHTKVIKAPLLKNELASGERIVRVSEEGKP
                     SETRFSIEERYANATLVKASPITGRTHQIRVHTQYAGHPIALDDKYGDAEFDSKMKEV
                     GLQRLFLHAHAIRFEHPKTGEEMVITAPLDKTLKGVLAKLRANY"
     gene            30697..31554
                     /gene="folP"
                     /locus_tag="PXA71_000100"
     CDS             30697..31554
                     /gene="folP"
                     /locus_tag="PXA71_000100"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDL5104253.1"
                     /translation="MQIHFKNFQKNDRLLDLTTPQIMGILNFTPDSFSDSGKFFSLDK
                     ALFQAEKMLADGASIIDIGGESTRPNAAIVSLEQELERVVPVVEAIRSRFDCLISVDS
                     SKAEVFKESAKVGMDIINDIRALTEPNALAAAVELGLPVCLMHMQGNPQTMQQNPHYD
                     DVLEDVADFLNQRIFECITAGIPKEHIILDPGFGFGKSVKHNYQLLKHLKAFVDSGFP
                     VLAGLSRKSMIGAVLDKPVEQRLLGSVVGALLAAQNGAKILRVHDVAETADALKIWQA
                     MLESDNEEK"
     gene            31554..31901
                     /locus_tag="PXA71_000101"
     CDS             31554..31901
                     /locus_tag="PXA71_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HDL5104254.1"
                     /translation="MTTLVYGIKNCDTVKKALKWLEDHNQNPQLHDYRVDGLNADWLV
                     EMEAKFGWENLVNKRSTTWRNLDEEIKNNLNRESALKVLTEQPTLIKRPIVIKEDIAL
                     IGFNEKEYVAAFN"
     gene            32031..33179
                     /gene="dapE"
                     /locus_tag="PXA71_000102"
     CDS             32031..33179
                     /gene="dapE"
                     /locus_tag="PXA71_000102"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HDL5104255.1"
                     /translation="MKNEIISLAQNLIRRDSISPQDKGCQQEIAQRLEKLGFNIEWLP
                     FGDTLNLWATHGSENGKTEPCIVFAGHTDVVPVGDESQWAYPPFSAEIVDGMLYGRGA
                     ADMKGSLSALVVAAETFVQHHPNHKGKVALLITSDEEAAAKDGTVKVVETLMARNEAV
                     HYAVVGEPSSSKVFGDVIKNGRRGSITADLYIEGIQGHVAYPHLAENPVHTSLGFLTE
                     LTTYQWDNGNEFFPPTSLQIANIKAGTGSNNVIPGELYVQFNLRYCTEVTDEIIKAKV
                     AEMLEKHGLKYRISWNLSGKPFLAGNGKLVEAALQAVENVTKITPRLDTGGGTSDGRF
                     IALMGAEVVEFGPLNATIHKVNECVSADDLAHCGEIYYQILEKLLATA"
     gene            33290..34624
                     /locus_tag="PXA71_000103"
     CDS             33290..34624
                     /locus_tag="PXA71_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HDL5104256.1"
                     /translation="MQLYSYICLLFGLAMFISFFTRKLNENIQTTIAITASALVGSLL
                     ILTFGSLGWFNVDKLAISIFEQLDFKSFLLNGMLGFLLFAGSLGIKLPLMKEQRREIA
                     VYALFSTLVSTFLIGALIYGVARLLGLELGFVYCLLFGSLISPTDPIAVLAIIKSLKA
                     PKRLSMHVEGESLFNDGIGLVIFTTIFAVAFGGQEPNLSGITGLFLQEAVGGIVFGLL
                     TGFVAHKFISATDDGSLEILITLTIPTVGFVIANYLHVSGALTMVVAGIMIGNWTRRS
                     GFSEQSQKYLDHFWEMIDHSLNYLLFLLIGLSTLLVDFTFIGGVLMLAAIPICLLARY
                     ISLWIPYQVLKRFRTYNPYTLKIMTWGGLRGGLALAMALSVPAGAAVVSSSEGNLDVR
                     DLILLMTYAVVTFSILVQGSTVEPMIKKSKLVDPRKVALNKLGAPDDVIPHI"
     gene            34731..35240
                     /locus_tag="PXA71_000104"
     CDS             34731..35240
                     /locus_tag="PXA71_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HDL5104257.1"
                     /translation="MLFTGLLCGFLLGFVMQRGRFCITGAFRDLYVTKNSRMFVALLI
                     AITVQSIGIWLLYEAGSFSSPAEDLPLLAVIIGAFLFGIGIIYAGGCATGTWYRAGEG
                     LIGSWVALVIYGLFSASMRTGVLAPLNQELKSNVIQHRTIYETFGISPWVLVFILSVI
                     TLALSAHSI"
     gene            35269..35490
                     /locus_tag="PXA71_000105"
     CDS             35269..35490
                     /locus_tag="PXA71_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL5104258.1"
                     /translation="MNVRLPASGLVCPFPLVEAKAAMAKLNKGDSLTIEFDCTQATEA
                     IPNWAEEEGYEVTDYQQLGDALWEITVVK"
     gene            complement(35555..37063)
                     /locus_tag="PXA71_000106"
     CDS             complement(35555..37063)
                     /locus_tag="PXA71_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDL5104259.1"
                     /translation="MSKCPVTHLTMNNGAPVVDNQNSLTAGPRGPLLAQDLWLNEKLA
                     NFVREVIPERRMHAKGSGAFGTFTVTNDITKYTRAAIFSQVGKKTEMFARFTTVAGER
                     GAADAERDIRGFALKFYTEEGNWDMVGNNTPVFFLRDPRKFPDLNKAVKRDPRTNMRS
                     ATNNWDFWTLLPEAFHQVTIVMSERGIPASYRHMHGYGSHTYSFINAANERFWVKFHF
                     HTQQGIKNLTNEEAAAIIANDRESHQRDLYEAIERGDFPKWKMFVQIMPETDADKVPY
                     HPFDLTKVWPKSDYPLIEVGEFELNRNPENFFADVEQSAFAPSNLVPGISVSPDRMLQ
                     ARLFNYADAQRYRLGVNHHQIPVNAPRCPVHSNARDGQGRVDGNYGSTIHYEPNSFGK
                     WQEQAQYAEPPLKINGDAAHWNYREDDADYFSQPRVLFNMMNDEQKQALFNNTAAGMG
                     DALDFIKYRHIRNCYACDPAYGEGVAKALGMTVEDAIAARATDPALGQPGLL"
     gene            complement(37351..38490)
                     /gene="dnaJ"
                     /locus_tag="PXA71_000107"
     CDS             complement(37351..38490)
                     /gene="dnaJ"
                     /locus_tag="PXA71_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDL5104260.1"
                     /translation="MAKKDYYEVLGLSKGASEKDIKRAYKRLAAKHHPDKNQGSKESE
                     EKFKEITEAYDVLTDSEKKAMYDQYGHAAFEQGGAGAGGFGGFGGGGFGGFEDIFSEM
                     FGGGFGGGGRRQRVVRGDDLRYDIEITLEEAVKGCKKDIRIQTLAECDTCHGTGAEAG
                     SKVETCSHCHGSGRVRRQQGFFVTEAVCPSCHGTGKRIEKPCRSCHGDGRVQKAKNLS
                     VTIPAGVDTGNQLRLSREGAAGENGAPAGDLYVVIHVKEHDIFERDGSNLYCEVPISF
                     TLAALGGEIEVPTLDGKLKLKIPAETQTGKLFRVRGKGVTSPRGGYAGDLICKVVVET
                     PVNLTEEQKALLRQFEESLEGQGKHRPKHEGFFDGVKKFFDNLGK"
     gene            complement(38713..39015)
                     /locus_tag="PXA71_000108"
     CDS             complement(38713..39015)
                     /locus_tag="PXA71_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104261.1"
                     /translation="MLKLYPTTENVQPPFYKIYDHKSGETVIATETENSNTAILMDDF
                     VWFEQIPTTEALLADTWSVIENRSKQGLLKRAYTKDFEKHLADGKVEIYIAVNPHC"
     gene            complement(39157..41055)
                     /gene="dnaK"
                     /locus_tag="PXA71_000109"
     CDS             complement(39157..41055)
                     /gene="dnaK"
                     /locus_tag="PXA71_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005670448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDL5104262.1"
                     /translation="MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGARTTPSIIAYTD
                     KETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDAEVQRDIEIMPFEISKADNGDAWV
                     TVKGDKLAPPQISAEILKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIA
                     GLDVKRIINEPTAAALAYGLDSKKENQTIAVYDLGGGTFDISIIEIDNFDGEQTFEVR
                     ATNGDTHLGGEDFDNRVINYLVEEFQKEQGVDLRNDPMAMQRVKEAAEKAKIELSSAQ
                     ETEVNLPYITADATGPKHLNIKVTRAKLESLVEDLVNRSLEPLKTALADAGLSVGDIN
                     DVILVGGQTRMPLVQKKVADFFGKEPRKDVNPDEAVAIGAAVQGGVLSGSVTDVLLLD
                     VTPLSLGIETMGGVMTTLIEKNTTIPTKKSQVFSTAEDNQSAVTIHVLQGERKRAADN
                     KSLGQFNLEGINPAPRGMPQIEVTFDIDANGIINVSAKDKNTGKEQQIKIQASSGLSD
                     AEVEQMVRDAEANAEADKKFEELVQARNQADGIAHATRKQITEAGDALNADDKAKIEA
                     AISELETAAKGEDKAEIEAKIEALIKASEPLMQAAQAKAQGGEQPQQSQKDDGVVDAE
                     FEEVKDNK"
     gene            41314..41652
                     /locus_tag="PXA71_000110"
     CDS             41314..41652
                     /locus_tag="PXA71_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5104263.1"
                     /translation="MKLITTIIQPSKLDQVQDALSEIGIQGMTITEVKGFGRQYGHTE
                     QELSQMSRIDFRPKIKVEILVSNYQTDEVIDAILNASYSGQVGDGKIYVANIEQVIRT
                     RTGETDDEAV"
     gene            41823..42566
                     /locus_tag="PXA71_000111"
     CDS             41823..42566
                     /locus_tag="PXA71_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104264.1"
                     /translation="MLNKHINKIINSSFSLAFFTLTSFATAYCYGWGQAIFHGYPWWH
                     VEIGNASMARSLAYVFGTSVILFLCYALGYSLLNKVFQLHYFRNLGWLRVIVLVSVFT
                     VPVILTFYLFTGIVPIYISFIYIFVSGVSVFFFRKRWNNTKFDLDFRKMLLGGSFALF
                     NIFIFLYFSLLSLHIGYLRAGLRTTYDYIEIENQKYYILSTNSDNGYIMGTKIRGNQS
                     FLFFNRDTHQYYHVHIEQCTDSRLCKVIV"
     gene            42574..42804
                     /locus_tag="PXA71_000112"
     CDS             42574..42804
                     /locus_tag="PXA71_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104265.1"
                     /translation="MALHRCPECRKRISDSLEHCIHCGFSFKEADLAIYRQKLEQRRL
                     HNQEINRKSVKLQLIWLVIFIAVIALASWITN"
BASE COUNT        12032 a         8991 c         9183 g        12636 t
ORIGIN      
        1 tttttttagg gaaaatctgc aaatgctttt ttagctccat tcaagcgtat aaggcttaat
       61 accaatccct ttactattaa gacagtcttg tagatttcta atattattaa caatattttc
      121 ggtaattagg ttggcttgtt taactttttc ttcagtaaca ttgggatctt tttcgttgaa
      181 taaaatcgca tttaataatc tttctgcgtg cataccctct cggcagtaat gtaaaacacc
      241 gacatcatta aatgcagtag ctacagagct aatttgtgta gtggctatgc ctaaagcacc
      301 atcttctcca cctaattctt ggaagagctg atgttgtgga aagccgccac aagcgaggaa
      361 gaaactacgc cgaaatacag tgttgcctgc accagtcatt tgcatatatt gccaagctaa
      421 ctcaaaatta gggtgagagc tgtaacgttg atctaagtta ccggttttaa tgctaaccga
      481 accaagccgg tttccggttt aaactcaaaa atcttttcag caacttgcaa tgccccgttt
      541 tcataagcat catcagcatc taaaaaggca attaaatctg tttcactttg taatgctccc
      601 cagttgcgtg ctttggcaac accgccattt tgaggcattt gttccactct aattttatca
      661 ggcacttggg cttgtaaatg tttagctaag gcaagcgtat tatccgttga agcatcatca
      721 ataagccaca atagatttaa tccagactga tttaatacac tttgcactgc acgaacaagg
      781 gtgttttcgg cgttatagca aggaataatc acattaatca tataaattca gctccttgct
      841 cggttacgct taaaatagag gcgtaatttt ctttccagtc gcctaataca atgcgggtaa
      901 atccattatg ctgatggatt gcttgtcgat gcgtatgccc gtgtataagt tgagttgtat
      961 tgtattttgc gacaatttga gcggtaactt cagcgtttac gtccataatt tcagcggatt
     1021 tatcacgctt ttcttgtttg cttttggatc gaattttctc cgcaatacga attcgccaag
     1081 aaagcggaaa catcaaaaag atagcttgtc gccatttttg gtggactttt ttacgaaatt
     1141 gttgatattt cacatcatca gtacaaagcg tatcgccgtg gcaaagcaag gtagatgtgc
     1201 cgaataaatc tataacgtga taatcaggca aaataaccat acccgtttgt tcgctgaatc
     1261 gtttgccaat taaaaaatca cgatttccgc aaataaaata gcattttgta ccgcttgtag
     1321 tgagggtttt gattgcctgt ttaacggttg aaatgagttc agactgctca tcatcgccaa
     1381 tccagaaatc aaacagatca cctaagatat aaaccgcttc tgcaagtagt gctttttctt
     1441 gcataaattg caaaaagagg tgggtaattt caggctgatt ttcatttaag tggagatcgg
     1501 caataaaata gtacgtcatt tgatattgtt gataaaaaag aaaacggttc aattttttac
     1561 aaaatcgaac cgtttgtcaa aggttaatcg gcattaatct ttaaaaatgc cacgaataaa
     1621 ttgtactgag aggaagaaca agaacgccaa tacggcataa agtacatagc tcataattgg
     1681 tttgctgact gtttctgctt cttctaatgg cttgattgaa acaatatttc taaattcatt
     1741 tagccaattg attcgccagc cgtaatattt aatttgcaca cgttgttttt cgttagcgta
     1801 ggcttgagct ttggcttgaa tgtcggcaga tccgaatttg aaataaggag gcaaccccca
     1861 gccggtatct tcattacgat aaaccattac ctttttggtt tcaggatctt ccgtgaataa
     1921 gaaataaaca tcgcgcacct cgccatcagc aggattcgct ttgctgataa taccatcttt
     1981 atccattcgg cgtacttcca tacctgttac tacggtatct tcataacttg gcattgcata
     2041 attaactgca ccgcctaata caataaaaaa tgatagtgag acaagaatca gaaaatactt
     2101 aagtattgct ctcatattag ttccttataa tttaatgttg aataagtgtt gcacattttc
     2161 ggttgtaatg cgagctaatt cttcagttga aacgcctttt aatgtcgcca catattcgca
     2221 agtttcccgc acatacgccg gctggttcgg cttaccacga taaggaatcg gggcaagata
     2281 aggggaatct gtttcaacca ataagcgatc taacggcact tttcgcacga cttctcggag
     2341 ttcttctgca ttgcggaaag taataatgcc cgaaattgag atataaaagc cgatgtctaa
     2401 agcccgtttt gccattgccc aatcttcggt aaagcaatgc aacaccccac cgcatttttc
     2461 ggcattattt tgttccaaca tatccatcgt atcttggcgt gccgaacgag aatggataat
     2521 gagtggctta ttgagtttgt ttgcaatttc aatttgttga acgaaaagcg attgttgcaa
     2581 cgctttggtt tccggtgtgt agtgataatc caaaccagtt tccccaatgg caaccacttt
     2641 cggatcttga gcgaactgaa ataatttatc gtaatcaaaa ggttcatctt ccacattcaa
     2701 cgggtgaacg ccacaagaaa gtgaaacgtc attacgatgg gcggttaagt ttttcattgc
     2761 ttcaaaacgc ccaactgtag tgcaaaccga gataaaatga tgcacccctc gggctttggc
     2821 attttcaatt acttcgtcca cgtttttgtg acgagtttcg tagtctagag aatctagatg
     2881 acaatgtgag tctatgataa ataagtcttt catttttcta aatatagcgt ttatgattca
     2941 tttggttatg taagatgcga acaataaata tatgatctgc ttttattcga taataaattg
     3001 tatgagattg atgtgtgtgc attcgcaagc caccacgaat atattccgca gaagttccca
     3061 ttgttggaaa atcagctaat aaattcaaaa tatgctttag atctgcaaaa taagattctg
     3121 tttgttgaac accaaattga gagatactgt aacgaaaaag tttctcttga tctcggagtg
     3181 cttgagcaga aagtttatac attaagttcc gcctttactc tcaacatcat ttcatcaatc
     3241 gtttcggttg cataaccact agcatcacca tcatcaatgg cttgtcgcaa ctgagctaag
     3301 tattgctctt tttcctcaag cattcgtaaa gcggttctca ctacttcact ggtagagcca
     3361 taacgcccac ttgccaccat ttcatttaca aaatcattta aaggttcgcc taaagtcacg
     3421 ctggttgttc ttgccataat attctccttg tgtgaattat tcatacaata acaaagatag
     3481 ataattttgc aagttataaa ctatattcta gggctagaag cctcttttta cggctaattg
     3541 aaagctacct tctatgagag agggctttta ctcaaacacc aaaaccaact tcgtcaggca
     3601 atctagcaac atcaattccg gattgacggc gttaatttcg gttaaatccc gctgggtttg
     3661 ttggagaatt tgatgccctt taagtaagcc gtgggtcgtt agttgttggc taaaagggag
     3721 aatgccgttt tggagatccg ggtttagcca accgtggctg attgccattt tagcttttag
     3781 ggcatcgcta aagaaacttt ccagccattc gagttgctgt aaaatcagct ctttttcttg
     3841 ggcgaaggct tggaataaca agaagacatc gtggcttttg tagaaacgcc agaaggtttg
     3901 caaaaaggtt tttcgctgtt gcaagcggtc attttcgata aaatttttgc aaattagtgg
     3961 gcgtgagtgg caaaggcgga gtgcaatctc taagtcgtcg gttgagattg ccggaaattg
     4021 tgtttgtagc caagccatta cttctgaggc ttgtggggcg taaagtaccc aagtttggct
     4081 gcggctttga atggtagcta aaactgttgc ttgaagcggt gcttcgagca agaaatagac
     4141 gttttcacgt ggctcttcca aggttttgag cagggcatta ctgcttgcct cggttaaacg
     4201 atcaactcct cgaatataaa cgaccgtatt tcccccttgt tgggcgaaat tctggagttt
     4261 ataaatcaac tcacgcactt ggtcgatacc aatatctttg tcttcaatcg gctcaagaat
     4321 gtggaaatcg gggtggttgt tgctttgcat aagcaggcaa cttttgcatt caagacaagg
     4381 ttgatggcgg agtttttggc tgcaaagcaa ccattcagcc accttgtaga ttaaggtgtc
     4441 tgtaccaaga ccaacatctg ttttgaacag taaggcgtga tgacctcgac cctgtaaaaa
     4501 tgaatcggta agttgttgat aagtgctttc gagccaaggg tacattattt cagccagttt
     4561 ctaattactt gttgaatatc cgcagtcacc tgttcgatgg gttgttcggc attgatgatc
     4621 acggctttat cgttgtgttg ggttaattct aaataacgct ctcgtgtgcg gtagaagaag
     4681 tcaaggcttt gctgttcgat gcggtctaat tcgcctctgc ctctggctct ttctaaacca
     4741 atcaccggat cgagatcgag ataaatcgtt aaatctggct cgaatgtgcc gagtaccgat
     4801 tcttttaagg tttcgagtaa gtgacgatcc aacttacgtc caccgccttg ataggcttgg
     4861 gaagacatat cgtggcggtc gcccagaacc catttgcctt cggcaagggc aggtttgatc
     4921 acattttcga ctaattgaac acgagcagcg tagagcatta gcagctcagc cttatcgtta
     4981 atggcttctt cggtttcgtg tttaattaaa tggcgtaact tttcggcaag gggggtgccg
     5041 ccgggttctc gggtcattac tacgtcatta atgccggctt gttccaactc tttgagaatc
     5101 acttggtgag cagtcgtttt gcctgcgccc tctaagcctt caattacaat aaattttcca
     5161 cgcatattgt tctcactatt tttgttcatt tttgcgtttg cgttcaattt gaatccattc
     5221 tgccaccgct ttattatgct cattcagtgt tttgctgaat ttatgaccgc ccgtgccgtc
     5281 tgccacaaaa tagaggtagg gtgtattatc cgggttggca accgctttaa tcgaagcttc
     5341 actcggcatg gcaatcggcg ttggcggtaa gccgtcaatc tggtaagtat tgtatggcgt
     5401 tgcctcttct aaatctttgc ggcggatatt gccgttataa cgatcgccca ttccgtaaat
     5461 gacggttgga tcggtttgca gtcgcatatt gttgcgtaaa cggttaataa agaccgatgc
     5521 cacttgtggg cgttcggtcg caatgccggt ctctttttcc acaatcgagg caagaatcag
     5581 catttcgtat ggtgttgcaa gcggtagatt ttccgctcta tttttccaag cctgttccaa
     5641 cgccgttttc tgcttttgat aagcccgttt aagcaaggct aaatcggtgg aattgggcgt
     5701 gtagttgtaa gtatccgggg ctatccaacc ttcgattttt tcgtgtggaa tgccgagtaa
     5761 gtcagcgatt tctttttccg atttgccttg tagcgtgtgc tgtaaataat cggctttcgc
     5821 tagttgttcc cgccaaattt taaaagtttt gccctcaata aattgcacgt taagttgcac
     5881 ttctttgccg gagcttaaat gagcgagcaa atcttttact gtcgttaagc ctgcgagtga
     5941 ataagcacca gccttgaatt tgcttaactc agggtataat cgcattaaat aagggataag
     6001 atcggcgtca tcgtgggtga caatgccttg ctcttctaac agagccgcta atttttggct
     6061 ggaaacgcct ttttccaata cgaaaagttg attcggctga accgtgatcg ggtgttcggc
     6121 taaagaggtg agtttttggt agccgtaaaa cagtccaccg caagcaataa cgccggctaa
     6181 gcctaatgca ataaggattt tttttagcat tgatgaataa aataaaagtg ataaaaattg
     6241 actgaattct actataaagc ggttgttttt tcagaaaaat ttgcaaatgg gatttgagta
     6301 aatggtgggt catgaaggat tcgaaccttc gaccaacgga ttaaaagtcc gctgctctac
     6361 cgactgagct aatgaccctc agaggagttt tgaaattaat ggtgggtcat gaaggattcg
     6421 aaccttcgac caacggatta aaagtccgct gctctaccga ctgagctaat gacccttaga
     6481 ggtgttttga agattaatgg tgggtcatga aggattcgaa ccttcgacca acggattaaa
     6541 agtccgctgc tctaccggct gagctaatga cccataatct tgcgtaacga gggcatatct
     6601 tacggatttt taaaactttg gcaagttttt tttatcgaaa aatggttgag tgtgcggttt
     6661 gtaagcaatt tagcaaaaaa ttagccggat ttgttggcgg aaaatgaaaa gagaaacggg
     6721 cttttatctt tttctgaaaa taggctataa tcacgccgtt tatttcacct attatagaag
     6781 gaaaccaaaa tgggcttaga attagttcct gccggtaaag aattaccgga cgatatttat
     6841 gttgtaattg aaattccggc aaactctgat ccaatcaaat atgaagtgga caaagaaacc
     6901 ggggcattat ttgtggatcg ctttatggca accgcaatgt tctatccggc aaactatggt
     6961 tatgtgaata acaccttatc atcagacggt gacccggttg atgtattagt gccaacacca
     7021 tatccgttac aaccgggttc ggtgattcgt tgccgtcctg tcggtgtgtt aaaaatgacc
     7081 gatgaagccg gcggtgatgc aaaagtggtt gctgttccac acaccaaatt aagtaaagag
     7141 tatgaccaca tcaaagatgt aggtgactta ccggcgttat taaaagcaca aatccagcac
     7201 ttcttcgaaa gctataaagc attagaagcg ggcaaatggg tgaaagtaga aggttggggc
     7261 gatgtaaacg aagctcgcca agaaatctta gaatcattcg agcgtgctaa gaaataatta
     7321 tttatttttg aatgccaagc aaatttgttt ggcatttttt gtgggatata aaatgaaatt
     7381 catcaaaaaa ttaagttatt cagttttttt agcaacagtg attaccgctt gtgccacaac
     7441 agaaagcatt aaccaagaag cggctcaaag ttatgctcaa gtgaaaaccc aagctcgtca
     7501 gcaaaatgcg attgacaatt cgtctgccac cgctaagcgg attcacactg tttttcataa
     7561 aatgaagcct tatgcggaaa gagccaacca gactggtgta ccttttcatt gggaaattac
     7621 cgtattgaaa tcggatgaac tcaatgcgtg ggcgatgccg ggcggtaaaa tggcgtttta
     7681 cacggggtta gtggaaagac ttaatttatc gaacgatgaa attgcagtgg taatgggaca
     7741 cgagatggct cacgcactga aagaacacgg taaatcagac cgtacggtta gcgctattac
     7801 cagtattgta ggtgctattg cagatgtggc tgtgactgcc tcaacaggcg taagcaccga
     7861 aggtttactc agcactggcg tggatttgat tgccaccaag ccattctctc gcagccaaga
     7921 gactgaggcg gacgaagttg ggttaatttt aatggcagaa tcaggctaca acccatcagc
     7981 agcgccgaat gtttgggtaa aaatgagtaa agccaatggc gattcaggct tgtccatttt
     8041 ctcaactcac ccatcaaatg ctgaccgtca agaaaactta gcccgccttg tgccggaagc
     8101 aatgaagatt tataacgccc gtaaataatt gacaatcggt tcttttttgc aaaaatgctc
     8161 ttgaatcctc aagagcattt ttcattaagt gttagtaacg cacaaaaccg actaattcat
     8221 ataccttatc taacgttgct ttggcttgag ctcgagcttt ttctgcccct tcacggtaga
     8281 ttttttccaa taatgcttca tcttggcggt agtggtgata acgttcttgc agattggtta
     8341 atagttcgga aaccttatct gctacttctg ttttcaaatg accatacatt ttgccttcaa
     8401 attcggtttc taattcggca atggttttgc cggtaatggc ggagagaata tccaataaat
     8461 tcgagacacc ggctttattc tgtacgtcat aacgcactac tggcggttca tcgccatcgg
     8521 tcattgcccg tttgattttc ttcgctaccg ctttcggatc ttccaatagt ccaatcacat
     8581 tgttacgatt atcgtccgat tttgacattt ttttggtcgg ctcaagtagc gacatcactc
     8641 ttgccccgga tttcgcaata aagacttccg gcactgcaaa aacaggctcg atcaggttgc
     8701 cttcggaatc ttttttgccg tataaggcat tgaaacggtt ggcaatgtca cgggtgattt
     8761 ccaaatgttg tttttggtca tcgcctaccg gcacttggtt ggcttggtaa agcagaatat
     8821 ctgccgccat taataccgga taagtaaata agcccacatt gacattctct tcatagcgtg
     8881 ctgatttatc tttaaattgc gtcatacgcc ccatttcacc gaaataggtg taacagttca
     8941 gcacccaagc taattgggcg tgttccggca cgtgggattg aataaaaata gtgcttttgt
     9001 ttggatcaat gccacaagct aaatacaggg ctaacacatc taaagttgat ttgcgtagcg
     9061 actccggatc ttgacgaacg gtaatggcgt gttgatcgac aatgcaatat acacagtcat
     9121 aatcatcttg cattttcacc cagttgcgta acgcccctaa gtagttaccg atagtcaatt
     9181 cacctgaggg ctgcacgcca ctaaatacaa taggtttgct cattttatct tctcgtttga
     9241 tttgaaaaat ataggttatc ttaacggtta ttgggaaggg ataaaagtac aagcggtcag
     9301 atttattgat gattttgcaa aaaatagagc aaatcagacc gcttgtatct tactcaaaaa
     9361 tcactgaaac ccttgccata atttcatcaa gtaggctttc gggtaaggct tcgataaatt
     9421 ttccatggcg ttgtgcaata tcgactgtgc gaggttgatc gcatcgaata atccctgttg
     9481 tttttaagcc ggcatctttt aatgaaacgg caaagcccag tctttcagca aaagctccac
     9541 cgttagtaat cggcacaacc acaggcagtt tactggctag attaaatgca gttgcggaaa
     9601 caattacaac ggggcggaag cctgattgtt cgtgtcctaa ggttggatca agatcgagcc
     9661 agtaaatatc gccacgtttc ataaaatttc ttttcctatt gccggctcgg ataaccacga
     9721 ttggctttct tcattccttg ctgcctcaaa atcggattgt cttaataatt cctctaagct
     9781 gtatttcact tttgggcggg caggattaat cacgagttgg ttgtcgttta aagacaaatc
     9841 cactttgcta ccgacggaga gcttgagtgc ctctaaaaaa gcaggcggaa tcaccattgc
     9901 aaccgagcca ccgacctgac gtaatgcgat tgttggcata ctttactcct ttaaatcttt
     9961 aggttcggaa agtctaaagc aaacatcaaa agaaaacaaa tgttttcttt ataaccccac
    10021 aattttcaac acatctttaa attcagatgt cacaaaagtc gggttagatt gttcaatcgg
    10081 cacattgtag ttatagccgt aagttagtcc aaccacatca caaccggcgg ctttggcggc
    10141 aatcacgtca ttttctgagt cgccgacaaa aagtaattct gatggggtaa tgccgaattt
    10201 ttcgcagata aaaaacatcg ggtcagggtg cggtttgatt ttggggagcg attgcccacc
    10261 aagggtttca tcgaataaat gataaatgcc gaaagcggaa agcaccggct cgactaattt
    10321 ggtcggtttg ttggtaatca ccaccagcgg gtagtcgttt gctttgagga tttctaaggt
    10381 ttctttcaca tttgggaaaa gggtgctttc ctcgcacaca taggtggcgt agtatttatc
    10441 aaagctcact cgcattttca ccaactcatc ggcttggaaa attctgccgg tgtgagcaac
    10501 cgcattttgg aagaaaatat ctgccccttt accgatccaa gtcagcactt tttcttgtgt
    10561 aaccgttggc aaaccggctt ctagaaacat tgaattggcg acaagagtga gatcggggag
    10621 ggtgttgatt agcgttccgt ctaagtcgaa accgatgact ttgtattttt tactcatagt
    10681 atatccttca aacacaagcg gtcgttttct gcaaattttt tgcaattttt gtaatgaggg
    10741 caaatattga cttgccccta cgtttatttc actttgttta ctttatacgc ccacgccata
    10801 atcagtatgc cgccgataat catcggtaaa gagagtagtt gcccacgagt gattaaatct
    10861 gcggtggtat tgacgttatg gtcgatttct cggaagtatt ccacaataaa gcggaatgtg
    10921 ccgtagccga ttaaaaataa ccctgaaacc gcacctgccg ggcgaggctt ttgaataaac
    10981 cagttgagga taaagagtaa caccacaccc tctaaaaagg cttcataaag ctgtgacggg
    11041 tggcggggaa gatagccacc gcttggaaat aacaccgccc aaggcacatc ggttacacgc
    11101 ccccaaagtt catcgttaat gaaattgccg atacgcccca tacctagccc gaacggtact
    11161 agcggtgcga taaaatctgc tgtctgccag aaattgcgtt tttggcggta ggaaacccaa
    11221 atcattgcta caatgacgcc gattaaaccg ccgtgaaagg acattccgcc ttcccaaatg
    11281 cgaaagaggt agagcggatc ttgtaagaaa cggtcgaagc tataaaagaa cacatcgccg
    11341 atacgcccac ctaatactac gccccagaag caagtataga ctaagctatc cacttgctcg
    11401 gttgtccaaa ctccattgga atttttcgcc cgtctcattc ccagccagta ggcaaaggca
    11461 aagccggcta aatacattag cccataccaa cgcagggcaa tcggaccgat ttcaaacaca
    11521 atcgggctaa tttgtggaaa ttggataaat tgttcgttca tagtgtcctt attttaaaaa
    11581 catattgatg gcgatacaga ccaaaagcac cgcaaaggct tttttcagca tcggcacagg
    11641 tagagcgttg gcggcacttg cccccatttt tgaggtgaaa aatgaagttg ccgtaatacc
    11701 aaacagagcc ggtaaataaa cataaccgag agaataatca ggcattcctt ctaagcccca
    11761 gccacttaca ataaagctga ttgtgccaga taaacctaaa aatgctccgc aaaatgagga
    11821 agtgccgatg gcacgtttca tttctaagcc tcgatcgttt aaaaatggta caataaaggc
    11881 tccacctgcg atccctgcca tactggctaa cgcaccgatg attgaacctc cgattatcgt
    11941 cgtttgaacg gtaagtggtt tatttttcgg tgctcttttt attgaaaaaa tcattttacc
    12001 tgcaaggtaa agtaccatta ccgcaaaaat tctagacatc agttgcggat cgaggcggct
    12061 taccaccaag cccgatagaa aaaccgaaac catcaacgct ggaataaaat atttactggt
    12121 ttggatatcg acattgccta acttatgatg gcgttgtgcc gatgcaaagg cggtaataat
    12181 aatggttgaa aatgatgtgc cgagtgcggt ggacattata tattccggcg gtacacctgc
    12241 catgggcagt aggaagacca aactcggcac gatgattaac ccaccaccaa tgccgaacaa
    12301 gccggctaaa aagccgacaa acacccctaa aaaaaggcag cttaataaaa tagtcatctt
    12361 attttccttt ttgattatgt tgatgccaag gacgataagg cttacgagct tctcgtttat
    12421 aggctttggc agaatcctga gaggtttttt tataagtatg gggcgaagtc tcgccacgct
    12481 caatgcgtgg tttctcaccg gttttatcgt cagtcgcttt ttgaatattg ttttgcaaaa
    12541 cctgtgcaaa ctctttcatc gctttgcgat aaacatctcg tttaaaagag accacttggc
    12601 ggactggata ccaaaagctg acccaacgcc agccgtcaaa ctccggattt ttcgtggttt
    12661 tcaaattaat caggctttca tcaccgatta attgcagtag aaaccaacgc tgtttttgcc
    12721 cgatacagac aggaccagag ccttcattac gtaccaagcg ttttggcagt ttatatttta
    12781 gccaatattt agacgcccaa agcaatcgta catctttttt acttaagccg acctcttcat
    12841 aaagctcacg gtacattgct gcttcaatgt tttccccctc attaattcca ccttgcggaa
    12901 attgccaaga gttttgacca aaccgttttg cccacagaac ttgcccgtgc ttattacaga
    12961 taacgattcc aacatttggg cggtagccat cgaaatcgat cactcgacca cctaattgat
    13021 aaaaattcta gaatgggaga attgtttcat actttgggtt gatttgcaaa aaaaccataa
    13081 aatataaccg cttgtgaata actttgtgga taactattga atataagtgg tataagttga
    13141 ggataaacag gcggaacgtt gtaaaacaga gcaattaatc agatctaaaa atgcgatctt
    13201 tttcttaagc aatgatctgg ataaagatca agttgttgcg ttttttctcg tcaaaataag
    13261 tttaaatttt aaaatgaata agcagggcaa tttttgcttc gcaaataaag cagagttatc
    13321 cccaccattt gtggataaag atgtgatagt ttttcaaatt aggcgtgaat aactcaaatc
    13381 agccttttgc tatttccata aattataatt aaatcaaata gttagtgtca tcttttcaat
    13441 ctgtgaataa tcaattgttt tgttggttgc tttttgtgca attgtatttt tatgctaatt
    13501 ggtttgtaac aaaaatgtga tctatttctc atattttgca aatagtagta attcttattt
    13561 ttattttaaa gtagaatagc cgcacttttt tcttaatgat ttatgaggtt ttaaatgatc
    13621 atttcatctg caaacgatta ccgccgtgcg gcaaaacgtc gtgttccccc ttttatgttc
    13681 cattatgcgg atggcggttc ttacgccgag cagaccttac gtcgtaatgt gagcgatttg
    13741 gaagacatcg ccctgcgtca acgtgtgtta aaagatatgt cgcaactaga caccggcatc
    13801 gagctgttcg gcgaaaaact gtctatgccg gtgaccctcg cccctgtcgg tgcattagga
    13861 atgtatgccc gccgtggcga agtgcaagcg gccaaagccg cagataacaa aggtattccg
    13921 tttacccttt ccactgtctc tatttgcccg attgaagagg ttgcaccggc aatcaaacgc
    13981 ccgatgtggt ttcagctcta tgtgttaaaa gatcggggct ttatgaaaaa tgcattggaa
    14041 cgagccaaag ccgccggttg ttccacgcta gtgtttaccg tagatatgcc gacccccggc
    14101 gcacgttatc gtgatatgca ctccggaatg agcggcccat acaaagacat tcgccgtgtg
    14161 ttgcaggcaa tggttcaccc gttttgggcg tgggacgtgg gcattcacgg taaaccccac
    14221 acgttaggca atgtgtcaaa ctatatgggt aaaccgattg atctgaacaa ctacatcggc
    14281 tggctgaccg ataatttcga cccatcaatt tcgtggaaag atttagagtg gattcgtgaa
    14341 ttttgggacg gcccgatggt gatcaaaggc attctcgacc cagaagatgc taaagatgcc
    14401 gtaagatttg gtgcggacgg tatcatcgtc tccaaccacg gtggtcgtca gttagatggg
    14461 gtactttctt ctgccaaagc cctgccaagc attgccgatg cagtaaaagg ggagatcaaa
    14521 atccttgccg actctggtat ccgcaacggc ttagatgtgg tgagaatgct ggctctcggc
    14581 gcagattgta cgatgatcgg gcgttccttt gtttacgctc ttagcgccgc cggtcaagcc
    14641 ggtgtggaaa acctgctcga catcttcctt aaagaaatga aagtggcgat gacacttacc
    14701 agcaatgcta aaattagcga catcggcaga gatgctttgg tagatttaag taatctttag
    14761 ctcaaatagc cacaatccgc acgttttagg tgcggattgt tattttagat aggctaattt
    14821 ggcattttgg taatattaat gcggtaatat ttcaatgtat cttggttgaa aaagagaaat
    14881 tcatcgttat ctttagtttt ttcgcccagc acataaatgt tattgcgatg aatagataag
    14941 acataatatc gcttattttc aatttcaaga taatcatacg ttgttctcag ctcagggcga
    15001 atgtagccaa tactcaaaga aagtaagcta aaatagatga aaataaaaat atagaaaaaa
    15061 ccgaagcgtt cttcgcttaa cattttttga atatctaagt ggaatacgcg gtggccccaa
    15121 tgtttgtgaa ataataatac tgatagggta gttgtcccta gatagaggta gttgtcccta
    15181 gatagagtag gtgtaaatac attggcactt tgccaataaa cagatagaaa ctgatcatta
    15241 ctggcaagct aaaaatagta acaagaacac tcacccgtag ccagccaagg tatttaaagt
    15301 aatgcagctt aaaaacttta ttaactaaag cgtatcctat caaataaaaa agaaagatag
    15361 ttaaaaatgt gccaaaaacg taggctagtg cgcgagctat accggcatta ccaacctcaa
    15421 catgccacca cgggtagcca tgaaaagcag caatacccca agcataacag taagcggtag
    15481 aaaaagagat taaagtaaag aaagcgagag taagagaaga gttgatgaat ttctgattag
    15541 tcataacagt aaatagattg cacctactta gttaaagatg aaacacaaga aagcagactg
    15601 agtttagctt ccacccaact cctttgttta gaggagaact ttattaaagc acgacttttg
    15661 ttgtatttca aacctttgtt tttatacaaa acaaccgtgt tgtaaaaaat gatcgtaaac
    15721 tgaccgcttg taatgcactc tgaatatatc gaaacatgat aaaaatgata aagcatgttt
    15781 cgataattta ctgtctttag tcttttaaat gttttgcatg aaaggctata tgttcaccga
    15841 taaagctact aatgaaatag tagctgtgat cgtaaccatc acgtaaattg aattggtagg
    15901 gtattccaag tctatctgcg gtttcacaga aaatttccgg ctttaactga tcgctcaaaa
    15961 agctgtcttg gctgccttga tcgattagaa ttggcaagct tgggcgatat ttttccagca
    16021 atgccacgct atcatacgcc ttccaagcgg tctgatcttc gcctaaatat gctaaaaatg
    16081 ctttttgccc ccaaggaact tgggttgggg cgacaatcgg tgcaaatgcc gatacacttt
    16141 gatattgccc cggattttta aatgcaatgg ttaaggcacc atgtccgccc attgaatgcc
    16201 caaaaattga ttgtttaccg ttagtcggga aatgagcatt aatcaatgtt ggcagttcgc
    16261 tgacaatgta atcatacatt tggtaatgtg ttgtccattc gccttgcgta gcatttaggt
    16321 aaaatccggc accctgacct aaatcataag cctcatcatt agcgacattc acacccctag
    16381 ggctggtatc cggtgcgacc acaatcagat gatgttcgtc ggcataacgt tgaaagccag
    16441 atttagtgat gaagttctgc tcggtacagg ttaaaccaga aagccaatat agtacgggta
    16501 gcttttgtgt tttagcagat tgcggcagat aaatagcaaa tttcatttca cagtttaagc
    16561 tggctgagaa atgttgccaa acctgttgtt caccgctaaa acagcggtag ttttcaaatt
    16621 gttgcataat attccttaca agcggtttaa ttccgctgat tttttgcaaa aataaaggcg
    16681 gaactcaccg cctttatatt gtaatatcaa cctttcaaac ttcccatatc aatcacaaac
    16741 cgatatttca cgtctgattt cagcattcgt tcataagcat cattgatgtt ttgcatatca
    16801 atcatttcca catccggcac aatgttgtgt tcggcgcaga agtcgagcat ttcttgagtt
    16861 tcctgaatgc cgccgatgac agaggcggaa atagagcggc ggcctaaaat catcggtacg
    16921 gtgttgatgg tttgctccaa ctcaccgacc aagcccacca gcaccaatgt gccgtccaac
    16981 gctaaggttg ggatataagg tttcaagtcg tgggtataag gcacggtatc gatgattaaa
    17041 tcaaaggtat ttgcaacgtc tgccatttgc ttttcatcgg tagaaagcac cacacggctt
    17101 gcgcccaaac ggtaagcatc atcggcttta cccagtgagc gagtaaaaag cgtaacttcc
    17161 gctcccattg ctttggcaag tttaaccgcc atatgcccca gtccgccaag ccccacaaca
    17221 gcgacttttg agccagcttt gacattccaa tgacgcaggg gcgaataggt ggtaatgcct
    17281 gcacacaaaa gaggggcaac cgctttggtg tccaagtttt cagagacttt taatacaaaa
    17341 tcttcactca ccaccacgca tgtgctgtaa ccgccttgtg ttggtgtgcc gtcaaagcgg
    17401 tcaataccgc cataagtgcc gatgttgccc acttcgcagt actgctccaa accgtgctgg
    17461 caaggactgc attcacggca ggaatccacc atacaaccga caccgaccaa atcgccgatt
    17521 tggaattttt tggcgttttt accgactttg ataatacgac cgatgatttc gtgccctggt
    17581 acaagcggat agctttgcgt ccagccccaa tcattgcgag ccatatgcaa gtctgaatgg
    17641 cacacgccac agtacaaaat atcaatcaaa acatcgtctt caagcaattc acggcgttca
    17701 aaactgtgtg gggcaagtgg tgtggttgcc gaaaaagtgg cgtaggattt gatagggtaa
    17761 gccatttttg gggtttaaat ggctgaaatg gcaattacta tagtgccgat gatttattat
    17821 tgaaaatcaa gatttttgat aaatcggtat cagttaaaat gataattggg ggttttcaga
    17881 ctgactgaaa aattattttg cccattttaa aaacaaaaac accgccctca tcacaaaagc
    17941 ggtgtttttc atcaaaattg tgtcaaagca tactctgcca attctgtaag cacttcatca
    18001 gcaggacgct gagtgggttt taaattgagt gccaaatgtt tcacgccttt ttcttgttct
    18061 tttgcccaaa agtctgccaa gccttttgca ccaccacgca gataaatgtt gttaaataac
    18121 tgtgctttgg cgtttttgtc gtccaaaact tccacaaatt gagcatagcc aaatgctgtg
    18181 ggggtgtctt tttggcgtaa atcggcaagg gtgttgatga tgtttgcggt gtcggcagga
    18241 ttcacaccgt gccaaatcca cgcatcaggt acattagcaa gccagtccat ttcttgcctt
    18301 gctcgtccaa tcgccacaat gggcaagcgg tgtttgggtt tggggagcaa atccaaattg
    18361 tctgttaaat cggcataatg tttgcctttg aaatggggaa aatcctgctc ggttaaggtg
    18421 ttaatcaaat caatgctttc acgaaaacgc tcgctacgag aggcaaaatc cgccccaaat
    18481 gcagggtatt ccacaggtct atcgccagag gataagccca ataaaaaccg tccatgactc
    18541 aaactatcca cacttgtcgc cattttggca atgtgaatgg gactacgcaa aggggcaatc
    18601 agccctgccg tgccaagggc gatgttttgg gtgtgggcgg acaaaaaacc aagtgtaacc
    18661 atcgggtcaa gcccttgccc cacatcgcca aaatgagggt cataaaacgg cacatctcgt
    18721 acccacaatg ctgaaaagcc caagttttca gccagccgtg cattgtcggc aatggtggtc
    18781 aaattgtctg gaatgtgatt ttgatagccc ataaaggggg caattaagcc cagtgttaat
    18841 tgattttgcc caaaaacttg ggagaaaatg ggggaaagcg tgttcatttt ggcgtacctg
    18901 tcttatttaa gataaggtat tttaagggct tttgagtttg cttaaaatgg gataaattga
    18961 gaaagtgttt tgctaaattg gcataaatag acgctttcaa gctgactgaa aatttgcaaa
    19021 atttttaata aaaatgaccg cttgcctttc aacaagcggt cattcccctt taatttttta
    19081 ccaccgtaaa caccttattt ttcagccgat attcactttt ttcatcgtga gccagttgca
    19141 caatggttgg cttgcgttta cacaattcac gcattgcaca cgccgtcaat gttgccagca
    19201 agcatatctt gttcagagta agaggcatcg ccgccaatca aaatataatg ctcgcccata
    19261 tccaccacca ccgccaaatg ccccagcgta tgtcctgcgg ttggcacaag gcggattttg
    19321 ccgtctttgg tgagtttatg actgctctca aaactttcaa acgccccatc attaaaatag
    19381 atgccatcag gcttaaacca atcaggatag tgcattgtta aataaccgtt catcaccgca
    19441 ttgggggcgt tgattgcctg tttttcagtc tcactcatca caaatcagct gtttgggaaa
    19501 ttgggcaatc cgcctgcgtg gtcgccgtgc atatgggtca ttaccaccgt gtcaatgcgt
    19561 aaagggtcaa agccgtttgc ctttaaaatt tcgcccactt cttcgtgttt tttgacccca
    19621 cgccgttcgc aaaactgcat aaacgggtgc caccacggct gatagccctt gtcgttggca
    19681 cgactgcttt cgcccgtatc caccaaaatc aaaccgtcat cgtgttcaat cagccagcaa
    19741 ccaatcggca gtttaggcga ccatttttta tcggtcagca catcaagcac acgggcagga
    19801 cgggcaaaaa agcgtgccac ttgatgatga attttgattt gtacccaacc tgttgtcaga
    19861 caatgcactt taatcatttt tgtgttctca ttaaaaaatc gtgggcatat tgtagaaagt
    19921 gcggtaactt ttcacaaaca ttaaaaagtt cgtatttggc tggatatgca gataaaatta
    19981 caaaaatgta tgcttatttt gaaaaaagat gaacgattta agagtaatca aaacccatct
    20041 agcaatccaa aacgctttga ttgaattatt agatgaaaag ctgtttgaaa aagtgcaagt
    20101 ccaagaaatc attgaaaaag ccttgattaa ccgcaccact ttttaccgtt attattcggg
    20161 cgaaagtgat ttggtcggca aattgataaa agaggtgaag gcggaatatc aagacctgct
    20221 caaaaagcgt tttgaaagcg gtaatttgct gcgatttatg caaaccattg gcaaccgctt
    20281 attggaaaaa agacggctga ttttggcact ttggcaaatc aaaacccctc gccatcattt
    20341 gtatgacgat atgcacatgc tgttaaaaaa cgcctttatc gcccacgcca aacggataac
    20401 atcagatgat aaaaactggg ctgagaaaaa ttgggattac caagcccata tttttgccac
    20461 cattgccctt gaaagccata aatattattt tgaacaaggc aaacttttgc ccattccaca
    20521 ggtgtttgag gagtggatag aaatggtgca ggtgttgaaa agtgtttaga aataactggt
    20581 aaaattttcc ataaaaaaca ccgctttcat cacaaaagcg gtgctttcaa atcatcaaac
    20641 cttaaccaca atcttaccaa tctgctgatt gcttgccata tattcgtgag ctttaaccat
    20701 ttcatcaaag gcaaagattt tgtcaatttc agggcgtaac tgaccgcttg ccaaaccgtc
    20761 atagacaaag gttttggctt gtgccaattt ttcaggtacg gtggtaattt caaagagttc
    20821 atacccccgc acggtcaaat gcttacccaa aatcgggaac actggcacag caatatcatc
    20881 atggcttaac gctccataaa tgatgtaacg accatcttgt gccattgcat tgatgatttt
    20941 tgccgcctct tttctgccca cagggtcaaa taccacattg acgcctttgc cattggtgat
    21001 ttcaaaaagt ttggcggtta catcgtcttc gcttgtggca atcacaaaat ccgctccttt
    21061 ttccaaaagt acatcgcctt tggcgtgggt gcgagacaag gcaatcacgg ttgccccttg
    21121 cattttggcg atttggatac tggctaaacc aaccgaactg gttgcaccgc ccagcaccac
    21181 aaaatcgcct ttttgtactt tgccaaactc aatcagtccg ccataagcgg taacaaacgc
    21241 catccaactg gcggacgctt gttccattga caaattatca gggtgcttga ccacagcgtg
    21301 ttttggcata ttgacgattt cgccataagt gccgtattcg gtaaacataa aggacggaat
    21361 aatgctcacc ttatcgctaa tggcaacttc gttcacaccc tcgccaatcg ccacaatcac
    21421 accagcccct tcataaccca aagtcgcagg gaatacaggg tcaatcacat acgccccttc
    21481 acggtacatc atttcggcac ggtttaagcc aatggcttgg atttggattt gtacttcgtg
    21541 tgcttttggt gcaggaattg ctacatcaac gatttgcaag acatcaggcg aacctgtttt
    21601 tgtaaattgg atttgtttgc tcattgtttt gaccttttgt gtaaataatg ggcgtatttt
    21661 aatgcaatga atttatttta aacacaacat caattgcaaa acacttttgc taaatttaca
    21721 taaatacatt ttcacaatgt ctgaaaagtt gttttgcaaa ttttaaaaag aaaaccaccg
    21781 cttgccgatc acaagcggtg gtttttgtgg gttattttgc aagaggtgtc agcttggcta
    21841 cagtaagcgg ataaatgcga cgccggctaa gagtaaggta acgccgatga tctgcagcgg
    21901 tagaatgggt ttttgtgtaa tgccgaacag accgaattta tctaccagca ggctgccgca
    21961 aatcaggcca gagaggacga gcatcaccac cgagcctgtg ccgatttggg ggacgagcca
    22021 aacgccagcg aggataaaca ggctgcccag tatgccgccg ctccatatcc aaaacggttt
    22081 gccttcggtt ggctggcaga gtttcggcag gcttttttca taaaacagca ctaccagtaa
    22141 taagccgatg gcaccgacac cgaaggagac tgttgctgcg ccgagtgatg agccgggctg
    22201 tctgccgaat tcgccattaa cggcggcttg ggttgctaat gcggttccgc ctaatatgcc
    22261 gactgcgcgc cacagccata aatttgcgtt ttctttgcgt tttagaccgg acagatgggg
    22321 cagtaccacg gcaatccata cgccgaataa gactaaacca atgccaaaca ggcggctggc
    22381 cgtgaaggct atgtaaggcg agttaagcca agcgaaagtg tcgatcagca cgcccatcag
    22441 cacttggcct aaaatcggca tgaccgcagt ttgtacgccg ccgagcttgg ggaagatcag
    22501 tacgtttgcc gttagcccca ccatgccgag taatccgccc gtccatgccc ataaggggac
    22561 gttgcctaaa ttgtcgaggc taaatgctgg tgtttgttgc atgatgagcg agagtccgag
    22621 tagaaacagg aggcctacgc tgaaagagac aaacgaggtt aaaaatgccg cacccacgtg
    22681 catacgcaaa cgggcgttga tggctgattg aaatgcaatc agcacgccgg ctaaaatacc
    22741 gataataaat gtcatgacta actgggttgt gctgccgcct caaaatgagt ggtggttgaa
    22801 aagaaatgcc gtctgaatgc ggattcagac ggccttaagg cttggtatcg gcgtttacct
    22861 gatgttgaat agccgttttg cctagccggt ttattcgatg aatttcacca cggtttcgaa
    22921 atctttacgt gctttttggc ggatttcttt atcacggtaa ccgaaggtac acatcaccga
    22981 tacgccccat tcgcttgggt caaataatcc ttccgctgcc aaaatatcgt tgacttcttg
    23041 gtaagcgaaa ccttctatcg gacaagaatc tacgccaatt aaagctgcac cggtcatcat
    23101 attgcccaat gcgatgtagg tttgtttgct tgcccagtca aacaggctgc gttcgctgtc
    23161 taaaatgccg atatctttct cttggaattt tttatacacg gccatggctt tttcgcgcgc
    23221 ttcgccttgt aaacctcgtc tatccataat ttcagaaaaa tattggctgt cgtaacgggc
    23281 atttttcttc gctaaaatca ccacgatatg gcttgaggtt tccatagttg gaatgcccca
    23341 gcagtaaggt ttgatttttt gccgtaattc agggttttgc aacactaaaa actgccaagg
    23401 ctctgagcct accgaacttg gacttaaacg accgagttcc agaatatagt tgaaatcttc
    23461 agccggaatt tttctgctgc cgtcgtaaga acgggtagat gcacggtaat gaaaggcatt
    23521 gattacgtct tctttgttga aaaattgcat ggaacactcc taaaaatgca aaacagtctt
    23581 ttcagacggt ctgaaaagtc tagatgaaat acggataagt ataaaagatt taagttattt
    23641 ttaataattg ataattttga tatttaggta taagttgacg tgatgagaaa aaacagaccc
    23701 tctgaatgtt caggcggtct ttaacgttgg ttgtttacat aaataatccg cgttcatatt
    23761 gcttcggcac aaactgcatt tcactgctgt ctgctgcatt ttggtcatat tgcgcattca
    23821 atacccagta cggatcgcgc aataaggctc ttcccacagc cactaaatcc gcatcgccca
    23881 tacctaagat atgatcgcct accgccggat tatccaacat acctactgca attaccggtt
    23941 tgcccgtagc gagcttcact tgacgggcaa agtctacttg gtaacctgcg taaaattcgg
    24001 ggtgattacc tgcatgcaat acaccatcac caccaccgct gatgtctaag acatctgcgc
    24061 ctgcatcggc aaaacgtttc gctacctgca aaccataatc caagccaaag ccgttttcac
    24121 cgtattcttg tgcagaaatg cggacaatta acggcatttc agacggcatc acttcacgtg
    24181 ctgcctgaat cacttgctcg ccaaacaaca ttttgtcttg gccgtactca tcactgcgct
    24241 gattggattt cggcgaatag aattggtgaa ttagataacc gtgtgcgccg tggatttcaa
    24301 ttgtatcaaa gcctgcctca acggcacgtt tgaccgaatc cttaaaggct tgaaccaatg
    24361 ctttgacttc gtctgtcgtc agctcgcgag gtgtaatcag attttgtccg gcataatcca
    24421 actcaccgta gtgaattgca cttggagcca ctgcatccgg ctcgtcttgg gctttgcgtc
    24481 cggcatgggc gatttgcaca ccgatttttg ccccttgagc atgaacgctg tctaccagtt
    24541 ttttgaatgc ctgttgttgt tcatcgttcc ataagcctaa gcagtttggc gtaattctgc
    24601 cgtttggcgc cacattggtc atctccacaa taatcaagcc gacaccacct actgcacggc
    24661 tggtgtaatg cacgaaatgc caatcgttcg gtacgccgtt ggttgccgaa tattgacaca
    24721 ttggtggcat aaccacacgg tttttcaatg ctaagttttt aatgttaaac ggggtgaata
    24781 attttctgaa cttcgccatg ttgccttcct taatgaaata gattaggtgg aatgataatt
    24841 cagtgctatt atctattcaa attgattatt gtgatagtta ggtataaaaa tgagtgatat
    24901 aagaacactg gatttcaatt tgctcaaagc ttttgtggtg ctgctggacg aatgcaacgt
    24961 tagccgggca gcacaacgat tatccatcac ccaaccggca atgagcggta ttttaaaccg
    25021 cttgcgcgag agttttaacg atccgttatt tgtgcgagtg caacacggta tgcagccaac
    25081 cgaccgcgcg ttgcaactgg ggcaaaccgc acgcaacatt ctgcaagata tcagctccat
    25141 gctgcaacca cccatattgg aaccggaaca tctgaatatg accttgcgta ttgccgcaat
    25201 ggattatgta caacaaatta ttgccttgcc gctgattctg cgtttaagac ggcttgctcc
    25261 gaatgtaaaa gtcgccttac tgccggtgca ggggcaaaat atcaaaactt tgttcgagca
    25321 aaaaaaaatc gatcttgcct tggtcagccg ccaacattta agcacggata cgctgaaaac
    25381 ggtattatat gaagaacgct acgtatgcgc gatgagcaaa acacacccga tggcgcaaac
    25441 accgctatcg ctcgatcaat tctgcaatct tcccttcgca atgctttctt acaacggcgg
    25501 agaattcagc ggagctacgg atctagcgtt acaaaagata ggactacagc gcaaagtaat
    25561 ggtctcggta aaccatattt ccctgctgcc ccagctgcta caaggttccg acttagtcgc
    25621 agtattgccc gaacgcttag caaaaacctt acccaatgtt tatttacaac ctccgcctat
    25681 agaggtagaa ggcttcacca tgatgatggc ttggcacgaa agaaccgaac aagatacggc
    25741 gcatcgatgg ttaagagagg tgctgcaggg tgtggtaaaa cctaaacagg ctctttaatt
    25801 attctttctt ttgctatgaa aaaagccgtt tatattttta gataaacggc ttttttgcat
    25861 tctaatatta gtatttttct acaaactgag cataggcatt aatgaagttt tgcattgagc
    25921 tttttaatgt ctcagaggca atttcaccct gttcatcaaa tacgcctgta aataagtttc
    25981 ctacgtttaa tgcgaaaggt aaggttggca tatttacaaa tgagcctgaa gtaatagtac
    26041 gtacttgatc agctgcacgt acaccgcctg ccgggcttgc gccaacggtt acgatacctg
    26101 ccggtttgcc aatccatttg ctttgcccca ttgggcgaga aaccacgtca atcgcatttt
    26161 taagcattgc agaaaagctt gcattatgct caggtgtgac taataacacg ccatctgcca
    26221 cagcaaccgc ttcacgcact ctggtgtatt gtgccgggct gttttcatct aaatcacggt
    26281 cgtaaagtgg taagtctgca atatccacaa tgtttaattg aatgcttgca ggtgccattt
    26341 tttgtaagtg acgaacagtc aagtgactaa atgaagtttt gctgccgcta ccaattaata
    26401 ctgcaatttg ttttgccatt ttataattcc ttagtacata gagaatatag gcattttatc
    26461 cctttcaatc tgtttcataa agcgcttatg atgaaaagca ctatttactt atattaaata
    26521 attttgcaaa ttttaggcca aatttgaccg cttttatctt tagctaaaaa ggttataatt
    26581 tgtagaaata gatcttaatt tagggttttt atgctttttc taaacaaaat aaaacagctt
    26641 ttcatcttcg cctttacgct agtgttatct gcttgcagtt tggttgttta taagccagtt
    26701 gaaacaatta aacaggtaaa tgttgaaaga ggttatcgac aaaaaaatgt gatcgctgaa
    26761 agtgcaaaag acggtaatat tgttgtcatc atgttttcag gtggtggaac aagagcggcg
    26821 gcgcttggtt atggagtgtt ggaagagttt aaaaaggtaa gggtgaaaga aacaaataaa
    26881 ggtaatactt tattagagaa tatagatatt gcctttggcg tatcaggtgg atcgatatta
    26941 gccacttatt ttgcgttgga aggaaaggat atcattccta aatttgctga ccgtttttta
    27001 aaagcgaact ttcaaaaaga tattattaca gaggtgtttt cgttatccaa tcttcctcgt
    27061 ttaagttctc ctcaatatgg gcgtggtgat ttattgcaag aacgcttaaa ttttgccctt
    27121 tatcatggta aaaagtttgg tgatttagtg aaaaatcgta aaggaccttt tgctgtgatt
    27181 agcgcaacag acatgaacat tggtcaaaaa ctgaccttta cgcaagaaac ctttgatggg
    27241 ctttgtttaa atttgaatga tttagaaatt tcccgtgctg ttgctgcttc tagttctgtt
    27301 cctctgattt ttgcgccgct tacactgaat aacaatggtg gaaattgcca ttttagtatg
    27361 ccacaagaat ttagtgctag agaaaaagca attgatggac taattacaaa aaatattgaa
    27421 gaaacgaatc atatactcag cctttatcaa gatagtaaag aacgcccctt tatccattta
    27481 gttgatggtg gattaacaga taatttaggg cttgccagtg tgctggaaat atctgatgtt
    27541 atgggtattg aagagatgta ccagtatatt catcagctta gggtgaaaaa tattgtagtg
    27601 attaatgtaa atgcgcaaaa tgaagtatct agcgagatcg ataagaccgc aaatgtaccg
    27661 ggggtggctg atgtagtgaa tacaatagtt aatgtgccaa ttgatagaac gacacaaatt
    27721 aatttacaac gttatcgcca gtttacagat ggttggaatg aatatgcaaa taaacagcca
    27781 tcaaagatcg aaatgcattt tgtcagttta ggtttaaaag aattacctga tggtgattta
    27841 aaaaaagatg tgctaaatat tgcaacatca ttttatttgc cggaagagga tgtagataaa
    27901 ttacgtgaag ctgctcgggt tttattgcag caatctcaag aatataatgc ggcattaaaa
    27961 acactgcagt agtaaaaaac cgaccaagcg gtcggttttt ggtatttttt tgcaaatatt
    28021 tattcgctga tgtcgtttaa atccaacaac tcttgcgaaa gaataatgcc ggttaagtca
    28081 gcataaacgt aatcttcggg gaagaaggtt acaccgccaa aattcacagg cgtatccact
    28141 tcgccaatgt cggtattatc tgctcccact ggaattggcg ctaaagcatg aataccgata
    28201 tctaatcttt ccaaaatatc taattggcga accgcaccat aaacgatgat accttcccag
    28261 ccgttatcta cagcaagttg agccagctct gcgtcaatta aggcacgacg aaccgcaccg
    28321 ccaccatcga ctaacagcac tcgcccttca ccctcttctt ccaaaacttc agcaattaaa
    28381 ccgttgcttt caaagcattt aaccgtggta atcttcccaa agaaggaaga agcaccgcca
    28441 aagcttgaga aaattggttc aaccacatca acttggtcag aataaagatc gcaaagtgca
    28501 gaggtatcaa tacgcataat atgctcctgt tcgtagatta tttagctaaa gtataaacct
    28561 tcgcccaaaa tttgcaaaat tttatcgaaa aaagaccgct tacaggcttt tttcttatgc
    28621 tttattttct agtgaaccgc ttttaatatg caattccatt tggttgtaag gaatagatat
    28681 acctgcttca ccaaaggcta attttacttg ttcgataatt tcccaatatg ctgcccagta
    28741 atttggtgtc tgaacccaag ggcgaacaac aagttgaaca ctatgcggtg ctaaagcgcc
    28801 gactgctact acaggtgccg gatcttttaa tacataagta ttggcgtcta aaatgcgttg
    28861 gataatctct ttcgcctctt ttaagttaga ttcataagaa atatcaaagg tgaaatcaat
    28921 acggcgtgtc gggttgttag agtagttgat gatgctgtca gaaaacactt tgccgtttgg
    28981 taataacacg gttttgttat cgccggtgcg aagttccaac actaaaagcc ccatttgttc
    29041 aaccacgccg gtcattccgc cggtttcgat taaatcccct ttgcgaaatg gcttgaagat
    29101 taacaacatc acgccggcag caaagttttg taatgagttt tgtaatgata aaccgatggc
    29161 taaaccggca gcaccgatta atgcgaccag cgagctggtg ttaatgccga tttgtgaaag
    29221 cgaggcaatc accacaatta acagcagtaa aaaatagctg attgagacaa taaaactttg
    29281 cagcatttca tctttggttg attttaatgc ggctttaccg agtaaacggc taattaggcg
    29341 ggcaagaaat ttcccgacta caaaaatcgc aatcgccagt aaaattttgg tgccataagg
    29401 gataatccac tcatttagca tagtttcaat attcatatta ctgactttgt ggattacttt
    29461 ttcggtttcg gcaaccacgt caatgtttgg agctgtttcg gtgacttttt cagtcatatt
    29521 gtttccttaa aattaaaatg aaaaataagc ctagcgaatt tgcctcactc gctaagcggt
    29581 tttgtgctag aatttagagc aaaattttct ctaaaagaca agataatgac aacagaaaaa
    29641 gtaattagtg ccggcgttca attttttacg atcagtgaag atgaagccgg acagcgttta
    29701 gataattttt tattggcaaa gctcaaaggc gtgccgaaaa gtttgattta ccgcattgtg
    29761 cgaaaaggcg aggtgcgggt gaataaagga cgaaacaaac ccgaatataa attacagcct
    29821 gatgatttag tgcgtgtgcc gccggtgcgt gtggcggaaa aaaatgaagc cccaatttcg
    29881 actaaattaa acaaagtggc ggagctggag agccaaattc tgtatgaaga tgagtcaatg
    29941 ctagtaatta acaaaccttc aggcattgca gtacacggtg gcagtggttt aagttttggt
    30001 gtgatcgaag ccttgcgtgc attacgtcca caggctcgtt tcttggaatt ggtacaccgt
    30061 atagaccgtg atacatcagg cattttgctg gtggcgaaaa agcgttcggc gttacgttcc
    30121 ttgcacgaac aactgcgtga aaaagtagta caaaaagact atcttgccct tgtgcgaggg
    30181 caatggcagg ctcataccaa agtgattaaa gctccattgc taaaaaacga acttgccagc
    30241 ggtgagcgaa ttgtacgggt gagtgaagag ggtaaaccgt ccgaaacccg tttcagcatt
    30301 gaagagcgtt atgccaatgc cactttggtg aaagcttcgc ctattaccgg aagaacccac
    30361 caaatccgtg tgcataccca atatgccgga cacccgattg cgttagatga caaatatggt
    30421 gatgcggaat ttgacagcaa aatgaaagaa gtgggcttac agcgtttatt tctgcacgcc
    30481 catgctattc gttttgaaca ccccaaaacc ggcgaagaaa tggtcattac cgccccgctg
    30541 gataaaactt taaaaggcgt attggcaaaa ttaagggcta attactaaat aacttaatga
    30601 gagagtaaga tagcgcaagc gtccacgctt gtgctgtaaa tcaacataga gtggtacaag
    30661 cgtggacgct tgcaccaaca aaatataagc aaaaatatgc aaatccattt caaaaatttt
    30721 caaaaaaatg accgcttgtt agatttaacc acaccgcaaa ttatggggat cttaaacttc
    30781 acgccggatt cattttccga ttcgggcaag tttttttccc tcgataaagc cttgttccaa
    30841 gcggaaaaaa tgttagctga tggggcaagc attattgata ttggcggtga atccacccgc
    30901 cctaatgcgg cgattgtgag cttagaacaa gaattagagc gtgttgtgcc ggtggtggag
    30961 gcgatccgca gccgttttga ttgcttgatt tcggttgata gctccaaagc agaagtattc
    31021 aaagagtcgg caaaagtcgg tatggatatc attaacgata ttcgagcctt aaccgagccg
    31081 aatgcgttgg cagcggcagt agaattgggc ttgccggttt gtttaatgca tatgcaaggc
    31141 aacccgcaaa caatgcaaca aaatccgcac tatgatgatg tgttggaaga tgtggcagat
    31201 ttcttaaatc aacggatttt cgagtgcatc accgcaggca ttcccaaaga acacattatt
    31261 ttagaccccg gttttggctt tggtaaaagc gtgaaacaca attaccaatt attgaaacac
    31321 cttaaagcct ttgtggattc aggcttccct gtgcttgccg gactttcccg taaatcaatg
    31381 attggtgcgg tgttagataa accggtagaa caacggctac ttggctctgt agtaggggcg
    31441 ttattagccg ctcaaaatgg ggcgaaaatt ttacgggtgc acgatgtggc agaaaccgcc
    31501 gatgcgttaa aaatctggca ggcaatgctg gaatcagata atgaggaaaa atgatgacaa
    31561 ccttagttta tggcattaaa aattgcgaca cagtaaaaaa agccttgaaa tggctcgaag
    31621 atcataatca aaacccacaa ctgcacgatt accgtgtgga cggtttaaat gccgattggt
    31681 tagtggaaat ggaagcaaaa ttcggttggg aaaacttagt taataaacgt agcaccactt
    31741 ggcgaaacct tgatgaggaa attaaaaaca accttaaccg tgagtcggca ttaaaagtgc
    31801 taaccgaaca gccgacccta attaaacgcc cgattgtgat taaagaggat attgctttga
    31861 ttggttttaa tgagaaagag tatgtggctg cgtttaatta attttttccc ctgcttgtag
    31921 ggacaggtcc tgtgcctgtc cgtagtcttt aggattgttc gggcgggcac aggacccgcc
    31981 cctacaggat atatagcaaa aaattcaccc aaaacaaccg cttgtaacct atgaaaaatg
    32041 aaattatttc ccttgcacag aacctaatcc gccgtgattc catcagccca caagacaaag
    32101 gctgtcagca agaaattgca caacgtcttg aaaaactggg ctttaatatt gaatggttgc
    32161 cgtttggcga caccttgaat ttatgggcaa cgcacggctc ggaaaatggt aaaacagagc
    32221 cttgcattgt gtttgccggg catacagatg tggtgccggt aggcgatgaa agccaatggg
    32281 cttatccgcc gttttcggct gagattgtag atggaatgct ttatgggcga ggggcggcag
    32341 atatgaaagg ctcgctctcg gcgttagttg tggcggcaga aactttcgtg caacatcacc
    32401 caaaccataa gggcaaagtg gcattattga ttacctccga tgaagaggca gcagccaaag
    32461 acggtacggt aaaagtggtt gaaaccttaa tggctcgcaa tgaagcggta cattatgcgg
    32521 tagtgggcga accgtctagt agcaaggtgt ttggcgatgt gattaaaaac ggcagacgtg
    32581 gttcaattac ggcagatctc tatatcgagg gcattcaagg gcacgttgcc tatccacatt
    32641 tggcggaaaa tccggtgcat acgtcactgg gttttttaac cgagctgacc acttatcagt
    32701 gggataacgg taacgaattt ttcccgccta ccagtttgca aattgccaat atcaaagccg
    32761 gcacaggcag taataatgtg attccgggcg agctttatgt gcagtttaac ttacgttatt
    32821 gcactgaagt gaccgatgaa atcatcaaag ccaaagtagc ggaaatgctc gaaaaacacg
    32881 gtttgaaata ccgaataagt tggaatttat caggcaaacc attccttgcc ggcaatggaa
    32941 aattggtcga agccgcctta caagcggtcg aaaatgtcac aaaaattacg cctcgtttag
    33001 acacaggtgg cggtacttcg gacggtcgtt ttattgcatt aatgggggca gaggtagtgg
    33061 aatttggacc actgaacgcc actattcaca aagtgaatga gtgtgtgagt gcggatgatt
    33121 tggcacattg tggcgaaatt tattatcaaa ttttagaaaa attattggca actgcataac
    33181 cctaaatagg cagaatgtta tcaaattgta ttctgcctat tttttatgta gctattctgt
    33241 taaacagcgt ttacactagc ggcagttttt atatttatag gtaaatgtta tgcaactcta
    33301 ctcttatatc tgcttgctgt ttgggcttgc gatgtttatt tcgtttttta cccgaaaatt
    33361 aaacgaaaat attcaaacca ctattgcaat tacagcctct gcccttgtcg gctcccttct
    33421 tattcttacc ttcggttctc tcggctggtt taatgttgat aaacttgcca tttccatttt
    33481 tgaacaactc gattttaaaa gcttcctgtt aaacggaatg ctggggttct tgctttttgc
    33541 cggttcactt gggattaaac taccattaat gaaagagcaa cggcgggaaa ttgcagttta
    33601 tgccttattt tcaaccttag tttctacttt cttgatcggt gcgttaattt atggcgtggc
    33661 aaggctactt gggttagagc tcggctttgt gtattgtttg ctgtttggct cactgatttc
    33721 gccaaccgac ccgattgccg tattggcaat tatcaaaagc ctgaaagccc caaaacgcct
    33781 ttcgatgcac gtggagggcg aatctctgtt taatgacggt atcggcttgg tgatttttac
    33841 cactatcttt gccgttgctt ttggcggaca agaaccaaac cttagcggta ttaccggact
    33901 gttcttgcaa gaagcggtag gcggtatcgt ttttggctta ttaaccggtt ttgtggcaca
    33961 taaatttatt tccgcaaccg atgacggaag ccttgaaatt ttaattacgc taacgattcc
    34021 aacagtcggc tttgtgattg caaactacct acacgtttca ggggcattaa caatggtagt
    34081 tgccggtatt atgattggca actggactcg ccgttccggt ttctccgaac agagccaaaa
    34141 atatcttgat cacttctggg agatgatcga ccattcatta aactacctgt tattcctgct
    34201 tatcggctta agtacactgt tagttgattt cacctttatt ggtggggtgt taatgttggc
    34261 agcaattcca atttgtttgc ttgcacgcta tatcagcctg tggattccat accaagtgtt
    34321 aaaacgtttc cgtacttata acccgtacac cttaaaaatt atgacttggg gcggtttacg
    34381 tggtggatta gcccttgcga tggcactttc cgtaccggca ggggctgcgg tggtatcgag
    34441 ctcagaaggc aatcttgatg tacgtgattt gattttgtta atgacttatg cggtagtcac
    34501 tttctcgatt ttagtacaag gttcaacggt tgaaccgatg ataaaaaaat ccaagttggt
    34561 agatccaaga aaagtggcac tcaataaatt aggtgcacct gatgatgtaa ttccacatat
    34621 ttaatagcat ttataactga ataacatatc attttgctaa agattattag ccatctagac
    34681 ggctttatat ttaaatacct ctcacgttaa tttgttgaga ggtatttttt atgttattca
    34741 caggattatt atgtggcttt ctactcgggt ttgtgatgca aagagggcgt ttttgtatta
    34801 ccggagcatt tcgtgatctc tatgtaacaa agaatagccg tatgtttgtg gcacttttaa
    34861 ttgcaattac ggtgcaatcg atcgggattt ggcttttgta tgaagccggc tcttttagtt
    34921 ctccggcgga agatttgcct ttgctcgcag tgatcattgg ggcatttctg tttggtatcg
    34981 gcattattta tgcaggcggt tgtgctacag gaacgtggta tcgtgccggt gagggtttaa
    35041 tcggcagttg ggttgcactg gttatttatg ggctgttttc tgcttctatg cgaaccggtg
    35101 tgttagcccc acttaatcaa gagctaaaaa gcaatgtaat tcaacaccgc acgatttatg
    35161 aaacatttgg tatttcccct tgggtgttag tgtttatcct gagtgtaatt acattggcat
    35221 tatccgccca cagcatttaa aaggttaatt ttttaaggag taataaagat gaacgtacgt
    35281 ttacctgcct cagggcttgt ttgcccgttt ccattagtcg aagccaaagc ggcgatggca
    35341 aaattgaata aaggcgatag cttaacgatt gaatttgact gtactcaagc aaccgaagcc
    35401 attccaaatt gggcggaaga ggaaggctat gaagttaccg attaccaaca acttggtgat
    35461 gccttgtggg aaattacggt ggttaagtaa ttagcaataa aaaagctcta cttttttgta
    35521 gagcttttgc tttgagtttt gtatttacta aggattagag taaacccggt tgacctaatg
    35581 ctgggtctgt tgctcttgca gcaatagcat cttcaaccgt catacctaat gcttttgcca
    35641 caccttcacc atatgccgga tcacaggcat agcagttacg aatatgacgg tatttaatga
    35701 agtctaatgc atcgcccata cctgcagcag tattattgaa taatgcttgt ttttgttcat
    35761 cattcatcat attgaacaat acacgtggtt ggctgaagta gtcagcatcg tcttcacgat
    35821 agttccagtg ggctgcatca ccattaattt tcagtggtgg ctctgcatat tgagcttgtt
    35881 cttgccattt gccgaagctg tttggttcgt agtgaatggt actaccgtag ttaccgtcca
    35941 cacgaccttg accgtcacga gcgttgctat gaaccgggca acgtggagcg tttacaggga
    36001 tttggtggtg gttcacacct aaacggtagc gttgagcatc cgcatagttg aataaacgag
    36061 cttgtaacat acggtctgga gacacgctga tgcccggcac taagttactt ggtgcgaatg
    36121 cagattgttc cacatcagca aagaagtttt cagggttacg atttaattca aactcaccca
    36181 cttcaattaa cggatagtct gatttcggcc ataccttagt taaatcgaac gggtggtatg
    36241 gtactttgtc tgcatcagtt tcaggcataa tttgaacaaa cattttccat ttcgggaaat
    36301 cgccacgctc aatcgcttcg tataaatcac gttggtgact ttcacgatcg ttagcgataa
    36361 tagcggctgc ttcttcgtta gttaagtttt taatgccttg ttgtgtatgg aaatggaatt
    36421 tcacccagaa acgctcatta gctgcattga tgaagctata agtatgtgag ccataaccgt
    36481 gcatatgacg atatgaagcc ggaataccac gttcactcat tacaatagtc acttggtgaa
    36541 atgcttctgg taataatgtc cagaaatccc agttgttagt tgcagaacgc atattcgtgc
    36601 gtgggtcacg tttaaccgct ttgtttaaat ccgggaattt acgtgggtca cgtaagaaga
    36661 acacaggggt gttgttaccc accatatccc agttaccttc ttcggtatag aattttaatg
    36721 cgaaaccacg aatatcacgc tcagcatctg ccgcaccacg ttcacctgca acggtggtga
    36781 aacgagcaaa catttcagtt tttttaccga cttggctaaa aattgccgca cgagtgtatt
    36841 tagtgatgtc gttagttaca gtgaaagtac cgaacgcacc ggaaccttta gcgtgcatac
    36901 gacgctcagg aatgacttca cgcacgaagt tcgctaattt ttcatttaac cataaatctt
    36961 gcgctaataa tggaccacgt ggacccgctg ttaagctgtt ttggttatca acaacaggtg
    37021 caccgttgtt cattgtcaaa tgtgtaacag gacatttaga cataatagaa tcctcataaa
    37081 ttagaaataa gataggtaat taatccgaag agaattatag gtgttgtaga ttttttctca
    37141 atctatcaat ttgataatta atgactatta aatattaatt ttaaatagtt gattttaatt
    37201 gtcaagtatt ctgagaaaga tgataagcgg tcatttttcc actatttttt gcagtatgta
    37261 ggtgtaaaaa ttaacggccg agaagtagat ttcaacaaag aatagataat aaaaaagtac
    37321 atatttaaga aatatgtact ttttatgatt ttatttgcct aagttatcaa agaatttctt
    37381 cacaccatca aagaaacctt cgtgtttcgg acgatgttta ccttgtcctt ctaaactctc
    37441 ttcaaattgt cgtaatagtg ctttctgttc ttcggttaaa ttcacaggcg tttcgaccac
    37501 cactttgcag attaaatccc ctgcgtagcc accacgaggg cttgttaccc ctttgcctcg
    37561 tacacggaat agtttaccgg tttgagtttc tgccggaatt ttgagtttta atttgccgtc
    37621 taaagttggc acttcaattt caccgcctaa agctgcaagg gtaaagctaa tcggcacttc
    37681 acagtataaa ttcgaaccgt cacgctcaaa aatatcgtgt tctttaacgt gaatcaccac
    37741 atataaatcg cctgccggtg cgccattttc gcctgcagct ccctctctcg ataagcgaag
    37801 ttgattaccg gtatccacac ctgccggaat ggtaacagag aggtttttcg ctttctgtac
    37861 acgtccatcg ccgtggcaag aacggcacgg tttttcaatg cgtttacctg taccgtgaca
    37921 acttggacaa actgcctcag tcacaaagaa accttgctga cggcgaactc tgccggagcc
    37981 gtgacaatgc gaacaggttt ccactttgct ccctgcttcc gcccctgtac catgacaagt
    38041 atcacattca gctaaggttt gaatgcgaat atctttttta cagcctttca cagcttcttc
    38101 aagggtgatc tcgatgtcgt aacgtaaatc atcgccacgt accacacgtt ggcgacgtcc
    38161 accgccacca aagccaccgc caaacatttc gctgaagatg tcttcaaaac caccgaaacc
    38221 accgccgcca aagccaccga atccgcctgc accggcaccg ccttgttcaa aggcggcgtg
    38281 accgtattgg tcgtacatcg cttttttctc gctgtcggtc agcacgtcat aggcttcggt
    38341 aatctcttta aatttctctt ccgactcttt actgccttgg tttttatccg ggtgatgctt
    38401 tgccgccaaa cgtttatatg ctcgtttgat gtctttctcg cttgcccctt tagacagtcc
    38461 aaggacttcg taataatctt tctttgccat tgttgttccg tttgtaaatt tttctgtgtt
    38521 tttgaccgct tgccctcgcc ccttgtggga gaggggtagg atggttaatt ccccctctct
    38581 ctgaaaaata tttctgaacg aaatattttt cggtctctct cccacaaggg gagagagttt
    38641 tatataatta aatgggatct agccaagatg gctcaagatg acacaagcgt ggacgcttgc
    38701 gctatcaaaa gcctaacaat gcggattcac cgcaatataa atttctactt tgccgtctgc
    38761 taaatgtttt tcaaaatctt tggtgtaagc tcgtttgagc aaaccttgtt tggaacggtt
    38821 ttcaatcaca gaccaagtgt ctgccaaaag agcttcggta gttggaattt gctcaaacca
    38881 aacaaaatcg tccattaaaa tcgcggtatt gctgttttcc gtttctgtgg caatgaccgt
    38941 ttcgccactt ttatgatcgt atattttata aaacggtggc tgtacatttt ccgttgtagg
    39001 gtagagtttt agcatttgta aaatttcctt tgaaaagcac cgcttgcaca gccccaaagg
    39061 ggctgaatta tgtgtaacct agcacggctc gtgctaggtg gtatatatct acacaaaagg
    39121 ggcgaaagat atttcgcccc tacaagttac gcaagattat ttattatctt tcacttcttc
    39181 aaattccgca tcgaccacgc cgtcatcttt ttgagattgt tgtggttgct cgccgccttg
    39241 tgcttttgct tgtgctgctt gcattaacgg ttctgaagct ttgattaacg cttcgatttt
    39301 cgcttcgatc tcggctttat cttcgccttt agctgcggtt tctaactcag aaatagccgc
    39361 ttcgatcttc gctttatcgt ctgcgtttaa cgcatcgcct gcttcggtaa tttgcttacg
    39421 ggttgcgtga gcaataccgt ctgcttggtt acgagcttga actaactctt caaatttttt
    39481 gtctgcttcc gcattcgctt ctgcatcacg caccatttgt tcaacttcag catcgcttaa
    39541 gcctgaagat gcttgaattt tgatttgttg ctctttgcca gtgtttttat cttttgcaga
    39601 gacattgata ataccgttag catcaatatc aaaggttact tcaatttgtg gcataccgcg
    39661 tggagcaggg ttaatacctt caaggttgaa ttgacctaaa gatttattat ccgctgcacg
    39721 tttacgctca ccttgtaaca cgtggatagt taccgcagat tggttatctt ccgctgttga
    39781 gaacacttgt gatttcttgg ttggaatcgt agtgtttttc tcaattaagg tagtcattac
    39841 accacccatt gtttcgatac caagtgaaag cggagtaacg tctaataaca atacgtctgt
    39901 taccgaacca cttaacacac cgccttgaac cgccgcaccg attgccacag cttcgtccgg
    39961 gttaacgtct ttacgcggtt ctttgccaaa gaagtctgcc acttttttct gtactaacgg
    40021 catacgggtt tgaccaccga ctaaaatcac atcgttgatg tcgcctactg ataaaccggc
    40081 atcagctaaa gcggttttta acggctctaa cgaacggttt actaaatctt caactaaaga
    40141 ttccaatttc gcacgggtta ctttaatgtt taagtgtttc gggccggttg catctgccgt
    40201 gatgtatgga aggttcactt cagtttcttg tgcagaagaa agttcgattt tcgctttttc
    40261 cgctgcttct ttcacacgtt gcattgccat tgggtcgttg cgtaaatcaa cgccttgttc
    40321 tttttggaat tcttccacta agtagttgat tacacggtta tcgaagtctt caccacctag
    40381 gtgagtatcg ccgttggttg cacgcacttc aaaagtttgc tcgccgtcaa agttatcaat
    40441 ttcgataatc gaaatatcga atgtaccacc acctaagtcg taaacagcaa tcgtttggtt
    40501 ctctttctta gaatctaaac cataagcaag cgctgccgct gttggttcgt tgatgatacg
    40561 ttttacatct aaacctgcaa tacgaccggc atctttagtt gcctgacgtt gtgcatcgtt
    40621 aaagtatgca ggcacagtaa taaccgcttc ggttaccggt tcgcccaaga aatcttctgc
    40681 ggttttcttc atttttttca agatttcagc agagatttgc ggcggtgcta atttatcgcc
    40741 ttttacggtt acccacgcat cgccgttatc tgctttgctg atttcaaacg gcataatttc
    40801 aatatcacgt tgcacttcag catcagtaaa acgacggccg attaaacgct tgattgcaaa
    40861 taaagtattt ttcgggttag taattgcctg acgttttgcc ggctgaccaa ctaaggtttc
    40921 tttatcggtg taagcgatga tagatggcgt tgttcttgcc ccttccgcat tttcaattac
    40981 acgaggtttg tcgccgtcca ttaccgcaac acaagaattt gttgtaccta agtcaatacc
    41041 aatgatttta cccattttta tgattcctat aataataaat tcagtttgaa taagaaacgg
    41101 gattgcattt cccgttcaga cgaaatcata aatagggacg aaaatgcact gttcaagggc
    41161 aaaaataaaa aaattgcaaa atttttggaa aaagtaaccg cttgtatgtg ggggagattt
    41221 ggcagaatat ttcacggaga aaatacctcc taccttgcat acccctcaat agctttttat
    41281 acttacggca actcaaacag agaaggatat aatatgaaac tgattactac cattatccaa
    41341 ccttcaaaat tagaccaagt gcaagatgca ctttcagaaa tcggtattca aggaatgact
    41401 attaccgaag taaaaggctt tggacgccaa tatgggcata ccgaacaaga gcttagccaa
    41461 atgagccgca ttgactttcg tcctaaaatt aaggtggaga tattggtttc taattaccaa
    41521 accgatgaag tgatcgatgc cattctcaat gcatcctatt ctgggcaagt gggtgatggc
    41581 aaaatttatg tagcgaatat tgaacaagtt atccgcaccc gtaccggcga aactgacgat
    41641 gaagcagtct agccattgct agcagagaag ctttttatta tcgtgtttta gagttatatt
    41701 ttcaacctta ctaaagcaaa ttttctaatt tggtgtgaat taaatgtttg ttttttgtgt
    41761 aatacgggtt attatagtaa tcaaaaatag ttaggtttta atggaaatag acattctttg
    41821 ttatgctaaa taaacacatt aataaaatta tcaattcttc attttctctt gcatttttta
    41881 cattaactag ttttgctacc gcttactgtt acggttgggg acaagccata tttcatggct
    41941 acccttggtg gcatgttgaa atcggcaatg ccagtatggc aagaagtttg gcttatgtat
    42001 tcggtacttc cgtcatctta ttcttgtgtt atgcactagg ttatagttta ctaaataaag
    42061 tttttcagct gcattatttc cgaaatctag gttggttaag ggtgattgtg ttggtttctg
    42121 tgtttacagt gcctgttatt cttacttttt acttatttac cgggatagtg cccatttata
    42181 tctcttttat ctatattttt gtaagtggtg tgagcgtatt cttcttccgc aagagatgga
    42241 ataataccaa gtttgatctg gactttagaa agatgctatt aggaggaagt tttgccctgt
    42301 ttaacatctt tatttttctc tatttcagtt tgctctcatt gcatattggt tatttgcgtg
    42361 ccggactaag aactacctat gattacatcg aaatagagaa tcaaaaatac tacatattat
    42421 ccaccaacag tgataacggc tacattatgg gaacaaaaat aagaggtaat caatctttct
    42481 tgtttttcaa tcgtgatact catcaatact accatgttca tattgaacaa tgtacggata
    42541 gccgattatg caaagtaata gtttgaggta attatggcat tacaccgttg tccggagtgt
    42601 cgaaagcgta ttagcgacag tttagaacat tgcatacatt gtggcttctc gtttaaagaa
    42661 gccgatttag cgatatatcg gcaaaagtta gaacagcgcc gattacacaa ccaggagatc
    42721 aaccgcaaaa gcgtaaaatt acaacttatt tggttagtta tttttattgc ggtaattgct
    42781 ctcgcaagtt ggataaccaa ttgaaataaa agcccggtat ttaccgggtt tttttatacc
    42841 ta
//
LOCUS       DANLRW010000003        42695 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.003, whole genome shotgun sequence.
ACCESSION   DANLRW010000003 DANLRW010000000
VERSION     DANLRW010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 42695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42695
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.003"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            195..1802
                     /gene="pckA"
                     /locus_tag="PXA71_000113"
     CDS             195..1802
                     /gene="pckA"
                     /locus_tag="PXA71_000113"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDL5104266.1"
                     /translation="MLNRIEQELADLGITNVKEIVRNPSYEQLFEEEMKSDLKGYEKG
                     VLTNLGAVAVDTGIFTGRSPKDKYIVLDETTKDTVWWTSDAAKNDNKPMTQSTWQSLK
                     TLVTDELSNKRLFIIDAFCGASPEHRINVRIITQVAWQAHFVKNMFIRPTEEELKDFK
                     PDFVVMNGSQVTNPNWKEQGLNSENFVAFNITEGVQIIGGTWYGGEMKKGMFSMMNYF
                     LPLKGVASMHCSANVGEEGDVAVFFGLSGTGKTTLSTDPKRKLIGDDEHGWDENGVFN
                     YEGGCYAKTINLSIENEPDIYRAIRRDALLENVVVREDGTIDFDDKSKTENTRVSYPI
                     YHIDNIAVPSKAGHAKKVIFLTADAFGVLPPVSKLTPEQTKYYFLSGFTAKLAGTERG
                     ITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMEAAGAEAYLVNTGWNGTGKRISIKDT
                     RGIIDAILDGSIEKAEMSTLPIFNLAIPTALPGVETHILDPRNTYEDKAQWQAKAEDL
                     AGRFVKNFEKYATNEEGKALIAAGPKL"
     gene            1895..2896
                     /gene="bioB"
                     /locus_tag="PXA71_000114"
     CDS             1895..2896
                     /gene="bioB"
                     /locus_tag="PXA71_000114"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HDL5104267.1"
                     /translation="MTTFQLRLKAKDELTPHPTAQYWRKCQVEGLFDLPFMDLVFRAA
                     QVHRENFDANAIQLSTLLSIKTGGCPEDCEYCPQSARYDTGIEKQTMLDVETIVEKAK
                     IAKERGASRFCMGAAWRGPRPKDIKVVSEIINAVKSLGLETCGTFGMLEEGMAEELKQ
                     AGLDYYNHNLDTDPERYNKIIHTRNHEDRMDTLGKVRNAGLKVCCGGIVGMNETRPER
                     AGLIASLANLDPQPESVPINQLIKVEGTPLTNAEDLDWTEFVRTIAVARITMPQSFVR
                     LSAGRTTMPEAMQALCFMAGANSIFYGDKLLTTENPEEDHDRQLMDKLDLYPLQYIA"
     gene            3056..3153
                     /gene="ffs"
                     /locus_tag="PXA71_000115"
     ncRNA           3056..3153
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="PXA71_000115"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            3188..3895
                     /gene="gloB"
                     /locus_tag="PXA71_000116"
     CDS             3188..3895
                     /gene="gloB"
                     /locus_tag="PXA71_000116"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HDL5104268.1"
                     /translation="MLQITPIPALKDNYIWAIRNGQDVIIIDPSEHQPALNFIAKNAL
                     NLTAILITHNHHDHTDGVSGIVEQYPNIPVYGPQEVAEFANVIVSPEQHISLFGYDVR
                     IIESGGHTAGHISYLFGYDYLFCGDALFSGGCGRVFTGDYQAQFDALQRFKNLPNSVK
                     AYPAHEYTKSNLKFAEAVLPPSCVLSEYQEQVDLLRSQNKPTLPTTIGLEMQVNPFMQ
                     AVDLAEFIALRQQKDNF"
     gene            4054..4767
                     /gene="uppS"
                     /locus_tag="PXA71_000117"
     CDS             4054..4767
                     /gene="uppS"
                     /locus_tag="PXA71_000117"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HDL5104269.1"
                     /translation="MNFDPQNMPKHVAIIMDGNGRWAKQKGKLRIFGHQNGVKAVRSA
                     VSFAAKHHIQVLTLYAFSSENWSRPETEVSALMSLFMKALDSEVKQLHKNNIRLKIIG
                     DKSAFSENLQKRIAESEKLTENNTGLILNIAANYGGYWDIVQAAQQLAVHVKSEQLAV
                     EQITPALFQQHLVTENQPQVDLLIRTSGEQRISNFLLWQIAYAELFFSPVLWPDFNDE
                     AFSDAIYAYQQRERRFGGC"
     gene            4791..5660
                     /locus_tag="PXA71_000118"
     CDS             4791..5660
                     /locus_tag="PXA71_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDL5104270.1"
                     /translation="MLKERVLSAIIMIIAVLAAIFWLSPLPLTLVLSAIVVAAMWEWA
                     QFAGFKHPVPRAIVAMVTICLLLFAIVANTDYIRATRFITDETTPILFIGCIWWLIAL
                     VLVATYPNSAKLWEKSVAAKFLFGLATLVPFLIGTLALRFHNYAFDPYQGTYLFLYVC
                     LLVWGADSGAYFAGRAFGKRKLAPKVSPGKSWEGVIGGVLTSSLIAFTFLQLTPANVF
                     GKALATTPFILVSVGMVAISVLGDLAESMFKRQAGIKDSSQLIPGHGGILDRIDSLTA
                     AVPFFATFFFFVL"
     gene            5664..6974
                     /gene="rseP"
                     /locus_tag="PXA71_000119"
     CDS             5664..6974
                     /gene="rseP"
                     /locus_tag="PXA71_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDL5104271.1"
                     /translation="MTSIIAFFILICVLVFVHEYGHFWAARKCGVKVIRFSIGFGKVL
                     FKKKDKQGTEFVFSLIPLGGYVQMWNDETDINAPAQQALNTKSVLQRAFIIIAGPAAN
                     FIFAILAYWVVFIAGIPTVKPVIGEILPNTIASQARIPTELEITKIGHQSIQDWESAS
                     LALVGFVGNKNVPLEGNINGNSTQKYELDLSNWSIDSAKENPLTALGIRPKSAKVTAE
                     IKQVVENSPASQVGIQAGDRILQINQQPFNWFNLVELVQAGKPIELKIEQRGQIKDLV
                     VQPEKKDERYIIGVIPSYEPLADKYRTELKYDILTAFYKSIEKVWSLTQTILQFIGNL
                     ISGDLSIKNLGGPISMAKGAGATAEIGLVYYLSFMALISVNLGVMNLFPLLPLDGGQL
                     VLLAVEAIRGKALSEKIQLKFQQIGFAFVLSLMLFAFANDIIHF"
     gene            7089..9470
                     /gene="bamA"
                     /locus_tag="PXA71_000120"
     CDS             7089..9470
                     /gene="bamA"
                     /locus_tag="PXA71_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HDL5104272.1"
                     /translation="MKKLLLSSLLIANGVVAAPFVVKDIRVEGVQPTTGESIISSIPV
                     RVGQTATDTDVSNVVRHLFSQQRFADVRATREGNTLVIKVAEKPIIGKVEIEGNQAIP
                     KDALEQNLKANLINQGEIFDAAKLEAFKEGLIEHYHSTGRYEAKIDTSVSNNTEGGVN
                     IKLAINEGEVAKAKTIKFEGNNAFSDKKLLENLDIQPDVSWWNIFESSKFEQTAYQKD
                     LETLRDFYLNRGYAKFAIQDTDVQFNDNKTEVALTYKLDEGSQYHVSEMRIIGNTANM
                     DSQLNALLKEFKPGQLFRKSDLTQIEEEIKSILGDAGYGSAKVDIYPQFNEENKTVKI
                     SFVVDAGRRIYVRKIRFEGNGVTADSTLRREMRQQEGAWLSTNKASLGKARLERTGFY
                     ESVDMSMPNVEGTADQVDVVYKIKERNTGSINFGIGYGTENGISYQAGIKQDNFLGMG
                     STISLNGTRNNYGTSVNLGYTEPYFTKDGVSLGGNIFYEDYDNSDNDSMASYKRQTYG
                     INGTLGFPVNENNSYYLGLGYTHDKIKNAAREYTREKYVKSMNFEFDPAADYYKKIKA
                     DDFDFSLGWNYNSLNRGYFPTEGTTANIGGKITIPGSDNKYYRVSADFRNYYPLNREH
                     KWVISTKASIAYTNGFGGKEVPFYQLYTAGGIGTLRGFSYGAVGPQAIYYNTKSGKFD
                     SMNNDIIGGNALAAASLELITPTPFVSEKYQHNVRTSLFVDAASAWNTKWKKDEYTNL
                     PDYGDFKRFRASAGIAFQWMSPIGPLSFSYAKPIRKYDNDDIEQFQFNIGSSF"
     gene            9550..10341
                     /locus_tag="PXA71_000121"
     CDS             9550..10341
                     /locus_tag="PXA71_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpH family outer membrane protein"
                     /protein_id="HDL5104273.1"
                     /translation="MKKLFKMTGLAVALASTTGIANAADTIGFVDPSYVLQNHPVLLD
                     ASAKFDKFMKESQEKFAADEKKLADENKTLTAERNKINEDAQKLQNEQKNVEASIKKK
                     VAALEKDAPRLRSKEIQARQNAIQKEANAFQAKVTAIQKREADFAKKAEAFQKRADEF
                     QKRIEQANKENGGINPQEAQKQAVDEVNATIKEIAKSKGYTLVLQPQVALYAEDEGKD
                     ITEAVLDAIVKKHPEIKIEKPATEAQPATEKETKAEETKPEEAKK"
     gene            10341..11372
                     /gene="lpxD"
                     /locus_tag="PXA71_000122"
     CDS             10341..11372
                     /gene="lpxD"
                     /locus_tag="PXA71_000122"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HDL5104274.1"
                     /translation="MANFRLIDLAEHIGGTLRGNADLAIQSIAALDKADSSQITFISN
                     AKYRENLTACNAGAIIVSPADVEFCRADQNLIIVANPYVAYAQLAQYMDSTPKAASEI
                     HPSAVISPEAKLGNNVSVGANAVIESGVELGDDAVIGAGCFVGKNSKIGARTQLWANV
                     SVYHNVQIGADCLIQSSTVIGSDGFGFGYANDKGQWIKIPQTGGVIIGNRVEIGACTC
                     IDRGALDPTVIEDNVIIDNLCQIAHNVHIGFGTAVAGGVIMAGSLKVGRFCQIGGASV
                     INGHMEICDGAIITGMGMVMRPITEKGIYSSGIPLQTNKEWRKTAALVMNIDEMNKRL
                     KSLEKRFND"
     gene            11401..11859
                     /gene="fabZ"
                     /locus_tag="PXA71_000123"
     CDS             11401..11859
                     /gene="fabZ"
                     /locus_tag="PXA71_000123"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDL5104275.1"
                     /translation="MTTENREPNIIEVTEIMDMLPHRYPFLLVDRVTDYEEGKWLKAI
                     KNVTFNEPCFTGHFPGAPIFPGVLILEAMAQATGVLAVATYGKLSEDELYYFAAIDNA
                     RFKRPVVPGDQLQLEVEFLKEVRGITKFTGKAYVDGKLVCEADLMCARRK"
     gene            11893..12687
                     /gene="lpxA"
                     /locus_tag="PXA71_000124"
     CDS             11893..12687
                     /gene="lpxA"
                     /locus_tag="PXA71_000124"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HDL5104276.1"
                     /translation="MRLIDSTAKISPLAIIEEGAEIGAHVEIGPFSVIGKDVKIGART
                     KIHSNVVINGMTEIGEDNHIFQFASIGEINQDLKYQGEPTKVVIGNRNRIRESVTIHR
                     GTVQGGGVTKIGDDNLFMINTHIAHDCSIGNRCIIANNGTLAGHVTLDDFVIVGGMSA
                     IHQFVVIGSHVMLGGGSMVSQDVPPYVMAQGNHARPFGINFEGLKRRGFDKPTMHAIR
                     KVYKLIYSSGKTLEECLVEIEQIAATEPAIAIFKQFFKRSTRGIIR"
     gene            complement(12725..14725)
                     /gene="mnmC"
                     /locus_tag="PXA71_000125"
     CDS             complement(12725..14725)
                     /gene="mnmC"
                     /locus_tag="PXA71_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HDL5104277.1"
                     /translation="MGKLTFATLTFNDADTPVSEQFDDIYFSTQDGLAESYYVFQEGN
                     QLWEKWQSHPKEAFVIAETGFGTGLNFLAVADKFQQFRAAFPQSKLKRLYFISFEKFP
                     LTASQLADIHQRYPQFATLSENLTACWQPRQIGCQRYHFEQVYLDLWFGEIAENLPQL
                     GDLYSGTIDAWFLDGFSPDKNPEMWNEQLYLQMFRLSANGGSFATFTASSMVRRGLEA
                     AGFAVKKRKGFGKKREMLWGEKPLDSQVSEPNYPYFYAKNETADDIAIIGGGVASFFV
                     ALSLLEKGKQVTLYCKDETLAINASGNLQGAIYPQLSDDDERNVQFYIHSFDYALQRL
                     QQLKSNIEFEHNLSGVVLYAYDEKTAKKLEKMVEQTADDTLLKSCSQAELSEKLGLSV
                     PNSGAFIPQAGWLSPVQLVRNGFTWLEQKGLKIVLNHKVEHLTFSNGMWQWQTRGETV
                     RHQAVVLANGHTLNEFSQANGIPLYPVRGQVSQIPTTSELQKLKCVLCYDGYLTPMSA
                     YGTHCIGASHIRDNAETEFSLSEHWENVAKLQQNVTVCEWTQGIDLSENKAKVGIRAA
                     FRDRVPMVGAVHHFEQQKSQYANLYNQLRRKQAVENAEIFTNLYMVNGLSSRGLTTAP
                     LLGELLASLIVNEPVPISEDIWHNLSPNRAWIRKLLKGSTVA"
     gene            complement(14950..16386)
                     /gene="trpCF"
                     /locus_tag="PXA71_000126"
     CDS             complement(14950..16386)
                     /gene="trpCF"
                     /locus_tag="PXA71_000126"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HDL5104278.1"
                     /translation="MQNIVQDNAQPNQPTILQKIVQDKAIWVAQKEQAFPLSEFQHKI
                     VKSDHDFYAALAKGTHQEPAYILECKKASPSKGLIRAEFDLDSIAQVYKNYAAAISVL
                     TDEQYFQGDFRYIDQVKRQTTQPILCKDFMISAYQVYLARFYNADAILLMLSVVNDET
                     YRELATLAHELGMGVLTETSTEAEFERALALGAKVIGVNNRDLHTLTIDMNRIVRLVE
                     KYQAQISADVCLISESGINDHQQVKNIKPYVHAFLIGSSLMGSADLNNAVRAVIFGEN
                     KVCGLTRVQDVKAVYEQGALYGGLIFAEGSPRQLSLRQAQELVVNAPLRYVGVFQNQA
                     VEFVEKMAKQLELFAVQLHGSEDEQYIAELAEKLGSKTQIWKALSVDVEVENLEFNDN
                     PQIARYVLDSKVGNQQGGTGKTFNWALIPETLKQKALLAGGIGTENIEQALAQGCVGL
                     DLNSGVESAKGVKDLQKLTACFGKIIQA"
     gene            16474..16785
                     /locus_tag="PXA71_000127"
     CDS             16474..16785
                     /locus_tag="PXA71_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HDL5104279.1"
                     /translation="MKSQVIQHLSYLEIALRVNQLWEATPPSPEALANEQPFCVETLT
                     PTQWLQWIFIPRMRAILDANADLPRNFAITPYLEEALKNEGYLQAICEPLLGLEKLLK
                     D"
     gene            16939..17667
                     /gene="truC"
                     /locus_tag="PXA71_000128"
     CDS             16939..17667
                     /gene="truC"
                     /locus_tag="PXA71_000128"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HDL5104280.1"
                     /translation="MTLDILYQDNSLIAINKPAGVLVHRSWLDKHETVFAMQTLRDQI
                     GQHVFPIHRLDRPTSGVLLFALNSETARIMSEQFEQHLVQKTYLAVVRGYLQGSAQID
                     YPLKVILDKIADKFSQEKEAQAAITDYKGLATVEMPYPVGKHQTSRYSLVELSPKTGR
                     KHQLRRHLKHLFHPIMGDSKYGDLHQNRALVEKSGVSRLMLHAHKLQFQHPKNLQKIE
                     IIASLDEQWQRLFAFFDWNFTQYY"
     gene            17685..17849
                     /locus_tag="PXA71_000129"
     CDS             17685..17849
                     /locus_tag="PXA71_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HDL5104281.1"
                     /translation="MDNSLLSLTHEQQQAAVEEIQKLMAQGISAGEAIQIIANQLRDK
                     YQILEKSNNE"
     gene            17842..18318
                     /locus_tag="PXA71_000130"
     CDS             17842..18318
                     /locus_tag="PXA71_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104282.1"
                     /translation="MNKLWTVLALTITSHYSFAAAEKIVTKDLPAEGKPAVVLQVFDE
                     SEKIAKPIKGNKLFISKKQTRLCWHSINLPVQNKVTIAEAFYAPAAMKLASPGSKINS
                     SADKKNHTIITEINLANNQVLNRCWGFDKTDPVGKYKMEIQINDHIFKGLEFEIVK"
     gene            complement(18355..19206)
                     /locus_tag="PXA71_000131"
     CDS             complement(18355..19206)
                     /locus_tag="PXA71_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HDL5104283.1"
                     /translation="MENQKQAEIELKIMLEQQNVALVENYLNQTSPFPVLAHQTELLG
                     NTYYDTPEQFFATQKMGLRVRSVNQQYEITLKTQGEIVGGLHIRPEYNLALPNSQPDF
                     QTLVEKYQLPFENSEQIAESLQAIFSTDFTRKTWLVQVGMSDIEVALDQGIIKNHFGE
                     EPICELEFEIKQGNLGDLFTLVEAMPKADGMWLSNLSKAQRGYLLGQAVKWEQKIATA
                     MDGENSEKLTQLLADFICVGNESLEVLVRFNQCTQQQFSNWQQARAFVKSKDYLLHNL
                     TNLKTMI"
     gene            19267..20676
                     /locus_tag="PXA71_000132"
     CDS             19267..20676
                     /locus_tag="PXA71_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HDL5104284.1"
                     /translation="MFSKIHHKLNNFVQRGLDNHLRLAVTGLSRSGKTAFITSLVDQL
                     LHINKGGNSHLNLFAPARHGQILSVKRVEQGDLTIPRFEYDKNRQSLENQPPQWPEST
                     TGISEIRLAIRYQRQHSLLRHIKETGTLYLDIFDYPGEWLLDLPLLSLSYKEWSQTQQ
                     TIHKDERAELATPWLQAVKKLDLFAKTDENLLAEFSQQYTDYLLACKAQGMQYIQPGR
                     FVLPTENAKGAPVFQFFPLLDLSEAEWEKLEQSDRNSIFHTLKKRYEHYQKKIVKPFY
                     EDYFSQFDRQVILADCLTPLNYGYNEFMEMKLGLQQLFKHFHYGNRSLFHRLFSSNID
                     KLLFIATKADHITSDQVPNLESLMRQLVQEGGRHAEFDGIETGYLAISSIQATDAVKV
                     TQQDKIIKAIRGIRSSDRKQVTLYPGSVPNRIPDKNYWQFNRFEFDQFEPKQLDYSQA
                     IPHFRMDSVLQFLLADMFE"
     gene            20722..21072
                     /locus_tag="PXA71_000133"
     CDS             20722..21072
                     /locus_tag="PXA71_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5104285.1"
                     /translation="MNTVISQRKPIHWVGSTLDDIREFPDNIKRELGFDLDLVQQGLL
                     PRDFKAMANLGSGVMEIRVKDPSGAFRLVYLAKFKDAIYCLHAFQKKTQKTAPKDIAV
                     IKARYAAVKELENE"
     gene            21065..21388
                     /locus_tag="PXA71_000134"
     CDS             21065..21388
                     /locus_tag="PXA71_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5104286.1"
                     /translation="MNNIDTKIRHTTEAQGNVFEDLGFPIDEAQKLKSASQQLIETKL
                     MLMNEMSNWIDKNNLKQSEAASILGVSRPRISDMVNGKLEKFTLDTLVTFVAKTGKTI
                     QLQLS"
     gene            21496..21975
                     /gene="smpB"
                     /locus_tag="PXA71_000135"
     CDS             21496..21975
                     /gene="smpB"
                     /locus_tag="PXA71_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDL5104287.1"
                     /translation="MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRA
                     GKGNISDSYVIFRHGEAFLFGAMITPLNMASTHIVSDPTRTRKLLLNKRELDSLFGKV
                     NREGYTIVATSMYWKNAWVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNANRG"
     gene            22178..23485
                     /gene="serS"
                     /locus_tag="PXA71_000136"
     CDS             22178..23485
                     /gene="serS"
                     /locus_tag="PXA71_000136"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDL5104288.1"
                     /translation="MIDQNLLRTNLEDVATALKIKRNFILDVERVKTLEEQRKTLQVK
                     TETLQAERNTRSKNIGAAKARGEDISALLAEVDSMGNELDTAKVELDKVQAEIRELLL
                     SVPNLPADEVPLGKDDSENLEVLRWGEPRQFDFEVQDHVTLGENLNGLDFAAGVKLTA
                     SRFVVMKGKLARLHRALSQFMLDLHTEQHGYVETNVPFLVNHDTLYGTGQLPKFGEDL
                     FHTQPLTGQDPNEVQRPFGLIPTAEVPVTNLVRDEIIDEDSLPLRYTAHTPCFRAEAG
                     SYGRDTRGLIRMHQFEKVEMVQIVAPEKSMEALEELTGHAEKVLQLLGLPYRKVLLCT
                     GDMGFGAAKTYDLEVWLPAQNTYREISSCSNMWDFQARRMSARCKAKGDKKTRLVHTL
                     NGSGLAVGRTLVAVLENYQNADGSITVPEVLRPYMGGLEVITA"
     gene            complement(23544..23870)
                     /locus_tag="PXA71_000137"
     CDS             complement(23544..23870)
                     /locus_tag="PXA71_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104289.1"
                     /translation="MVSVDFKNNLLEFIFYGLFSEHTQTNIINGLQFYPKAGVAFRKD
                     LRFRKRAVYQREIMVFYQLDKIDEPKKVTIIAFRLGRMKNPIRLDTVQNRRVVTEIFM
                     NYPEKD"
     gene            complement(23863..24075)
                     /locus_tag="PXA71_000138"
     CDS             complement(23863..24075)
                     /locus_tag="PXA71_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104290.1"
                     /translation="MSIVIVDTDFVVHKEDEEWTTEEIKMIEEHLLEEQSAQYQVKRE
                     VPKQFYADIAERLSRGDLTAWEQLDG"
     gene            24262..26847
                     /gene="leuS"
                     /locus_tag="PXA71_000139"
     CDS             24262..26847
                     /gene="leuS"
                     /locus_tag="PXA71_000139"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDL5104291.1"
                     /translation="MQQQYNPSEIEPKVQRYWAENKVFKAVKDVTKEKYYCLSMLPYP
                     SGKLHMGHVRNYTIGDVVSRYQRMIGKNVLQPMGWDAFGLPAEGAAVKNNTAPAKWTY
                     ENIEYMKGQLKMLGFSYDWDREVTTCRPEYYKWEQWFFTELYKKGLVYKKTSTVNWCP
                     NDETVLANEQVHEGCCWRCDTPVEQREIPQWFIKITDYAEELLNQLDNLPQWPDQVKT
                     MQRNWIGRSEGVEITFKIAGSNVELPVYTTRPDTFFGVSYVAIAAAHPLAELAAQNNP
                     ALAEFIREAKNTKVAEAELATMEKKGMATGLFAIHPLTGKEVPVWVANFVLMHYGTGA
                     VMAVPAHDERDFEFAQKYDLQINQVIQPLDGSEWDFSKAAYTEHGKLINSAEFDGLEF
                     DVAFTAIADKLEAMGVGKRQVNFRLRDWGVSRQRYWGAPIPMMTTEEGEVVTVPLQDL
                     PVILPEDVVMNGVQSPIKADPEWAKTTYNGKPALRETDTFDTFMESSWYYARYTCPQY
                     HEGMLDSDEANYWLPVDQYIGGIEHATMHLLYFRFFHKLLRDAGILNSDEPATKLLCQ
                     GMVLADAFYYTSPTNERIWVSPTQVTLERDEKGRIIKATDPQGRELVHSGMTKMSKSK
                     NNGIDPQEMVEKYGADTVRLFMMFASPAEMTLEWQESGVEGAKRFLGRVWNLVYSYAQ
                     NPATTALDVNALDKDQKELRRDVHKTIAKVSDDIGRRQTFNTAIAAVMELMNKLTKAP
                     LETEQDKAVMAEALSAVVRMLYPITPHICFELWQVLGNEQTIDFAPWVQADESAMVED
                     EKLVVVQVNGKVRGKITVSATATEDEVKAIAKADPNVAKFLDGQQIVKEIYVPFKMLS
                     FAVKA"
     gene            27047..27535
                     /locus_tag="PXA71_000140"
     CDS             27047..27535
                     /locus_tag="PXA71_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104292.1"
                     /translation="MIKKLSLIAVFALTACGWHFKNNEVLPESFRTLTFESADQHSEM
                     SRILRNQLQLSDVKLVPSTANVAKLRLVSTSTDSKVVSVFKQAREAEKILTLNVDAIA
                     DIPNKGQYPLEVSVHRTFFDDSRAALAKSAEKEMIMKDMYEQASRQLIIKMAGLKKEL
                     SK"
     gene            27578..28603
                     /gene="holA"
                     /locus_tag="PXA71_000141"
     CDS             27578..28603
                     /gene="holA"
                     /locus_tag="PXA71_000141"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDL5104293.1"
                     /translation="MQKIFPETLQFSLNKGLQPFYLLTGNDLLLVNETKDAIIHTARL
                     NGFDEKKEVEIKNDTNWEELFEAAQSMGLFFARQIMVLNFPDSPTATQFKKLAELCAF
                     IHSDLLFILHLPKFSKTMEKQAWFTQIELNLVQINCQTPELSKLPQWVSHRAKAMNLQ
                     IENEANQLLCYSYEGNLLALKQALQLLQLNATDGKITLTKAQEVVEHSAQFTPFQWID
                     ALFEGKIQRAQRILYHLQNEEVQAVVLLRIVQKELMILLEITRNPTAVVSSEQSLFIG
                     NLRTEFDRLKIWQNRRPFYNQITQRLTYQKLYALIQQLAELERKVKQEFSDDIWQELE
                     RFSAQFT"
     gene            complement(28604..28789)
                     /gene="yacG"
                     /locus_tag="PXA71_000142"
     CDS             complement(28604..28789)
                     /gene="yacG"
                     /locus_tag="PXA71_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HDL5104294.1"
                     /translation="MPETIVNCPTCEKEVVWSKESKYRPFCSERCQIIDLGDWAAEKH
                     SIASEEAELFSEDLEKY"
     gene            complement(28771..29406)
                     /gene="coaE"
                     /locus_tag="PXA71_000143"
     CDS             complement(28771..29406)
                     /gene="coaE"
                     /locus_tag="PXA71_000143"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDL5104295.1"
                     /translation="MTYVVGLTGGIGSGKTTVSDLFSALGVEVIDADVVARQVVEPGT
                     PLLAKIVEHFGEEILTAEKALERTKLRQIVFNNEEEKTWLNNLLHPAIREEMVKKLQE
                     STACYVIWVVPLLIENKLTEYCDRILVVDVSPEIQLERATKRDNSKIETIKNIMAAQV
                     SREERLSYADDVIENNLPFEQGLLLIKEQVQALHYKYLALAKKEKECQKLL"
     gene            complement(29442..30098)
                     /locus_tag="PXA71_000144"
     CDS             complement(29442..30098)
                     /locus_tag="PXA71_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDL5104296.1"
                     /translation="MLILFSLFIAVWLKAEIPRFAIRVNRQIYQETTSLVNIGLTEQQ
                     FLAQSVLQPKQPRSANLFFLLFPLIMLCSESPIIGTIFILLCFLSLLDMCYYLTDIRY
                     LVLIFLLVLWESLADFQHQTFTFTLAFCLLIGLVSQLMFKKEAFGSGDMLLLVALSPL
                     FRLEKMLLLILTASLLGIGYYLAYWLMKKQKLAKLAFIPFISTAMLLVLMLESRGINY
                     "
     gene            complement(30101..31297)
                     /locus_tag="PXA71_000145"
     CDS             complement(30101..31297)
                     /locus_tag="PXA71_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDL5104297.1"
                     /translation="MTKIYEFHWQAQSRFGQKQRGKRLATNRDMLENLLLAQGYQHIR
                     ISRNFVLSANPKKEEVNSLLSQLALLVNSAMPLKQALSMLLQNCRNIRLYLWLNELIQ
                     HIESGYAFSQSLEKLGEFVTNQEIQLIKMGEQSGKLGIMLTNLAESRAKLEKLAKKVK
                     KILFYPVIVLLISLALSIGLLVLIVPQFAQLYGSKDKTLPLITDILFTLSECLIEQGT
                     VLLGTLLLAVIFYLFFAKKSRLVAKWKMALWAKMPLFSRIIEQSRIIFFSQNIALMLN
                     AHIPLDVALRSFLSEKNDDPILQQEIGTMLNLLQQGYKFSQGINPNVFGAEMAQMLEV
                     GEKSGNVAKMCEHISEMYQQKLDYQIDILSQLLEPMLMLIMGVIVGTIIVGLYLPIFD
                     MGALVE"
     gene            complement(31294..31746)
                     /locus_tag="PXA71_000146"
     CDS             complement(31294..31746)
                     /locus_tag="PXA71_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilB"
                     /protein_id="HDL5104298.1"
                     /translation="MEYSVTDLNSQRFIEISAEQWQKNCNEKQILLRYLAIPLQETEE
                     QLWLGIDDMQNLNACEIFAFIYHKQIEPVLISSDELKFLLNALSPEQSSRQSEIYEEN
                     TAYSLAHSEQVDRNDPIIQILENLFKFCLQHNASDIHFEPQKEKLLRQ"
     gene            complement(31767..32246)
                     /gene="ppdD"
                     /locus_tag="PXA71_000147"
     CDS             complement(31767..32246)
                     /gene="ppdD"
                     /locus_tag="PXA71_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HDL5104299.1"
                     /translation="MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNS
                     YTQKAALSELLQASASYKSDVEVCIYNSGGLDNCSGGTNGIQANKTSSNTTKYLNSIA
                     VTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG"
     gene            32427..33806
                     /gene="radA"
                     /locus_tag="PXA71_000148"
     CDS             32427..33806
                     /gene="radA"
                     /locus_tag="PXA71_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDL5104300.1"
                     /translation="MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKE
                     AAKSDRFSGYAGETSGKVQTLSDISLQEVPRFSSGFNELDRVLGGGVVPGSAILIGGH
                     PGAGKSTLLLQVMCGLAQHLPTLYVTGEESLQQVAMRANHLGLPTANLKMLSETSVEH
                     ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVG
                     HVTKDGTLAGPKVLEHAIDASLLLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGL
                     KEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHSMLANPRRVAVGLDH
                     NRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQD
                     LVIFGEVGLAGEIRPVTSGQERISEAAKHGFKRAIIPHGNVPKKAIKDMQVFTVKKLS
                     DALDILYNL"
     gene            complement(33861..34091)
                     /locus_tag="PXA71_000149"
     CDS             complement(33861..34091)
                     /locus_tag="PXA71_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HDL5104301.1"
                     /translation="MDYVEILGYVAMILVACSFLLKDVIKLRVVNSLGCACFVVYGLL
                     IGSIPVTGLNALVVCINLYYISKGNRPTAAHS"
     gene            complement(34211..34705)
                     /gene="folA"
                     /locus_tag="PXA71_000150"
     CDS             complement(34211..34705)
                     /gene="folA"
                     /locus_tag="PXA71_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HDL5104302.1"
                     /translation="MKISIIVARTINKVIGKDNQMPWHLPVDLAWFRQNTLGKPVIMG
                     RKTYESIGRLLPKRPNIILSRSGFTVEGAYAVQSLEQAVELAKNFANTAEIMIIGGGE
                     LFKQALPLAERLYLTEIQADIEGDTFFEFDEQNWALVEEKWSEIDENNPFRCRFMCLE
                     RKSV"
     gene            34781..34936
                     /locus_tag="PXA71_000151"
     CDS             34781..34936
                     /locus_tag="PXA71_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl kinase"
                     /protein_id="HDL5104303.1"
                     /translation="MATLFLVTSEQIMSKTIVIKFGTSTLTHGTKSLSRPYMLELVKL
                     NYTNSIV"
     gene            34933..35901
                     /gene="proB"
                     /locus_tag="PXA71_000152"
     CDS             34933..35901
                     /gene="proB"
                     /locus_tag="PXA71_000152"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL5104304.1"
                     /translation="MIVVTSGAAAAGRDYLGHPELPKTLASKQMLAAVGQSQLIRVWE
                     NLFDIYNIHIGQMLLTRADLDDRERFLNARDTLDALLAQKIIPVINENDAVATEEFKV
                     GDNDNLSALVAILAQADQLYLLTDQEGLFSADPRSNPDAKLLSVVEKITPEIRQIAGG
                     SSTGLGTGGMSTKITAADIATRSGVETIIASGSRPNVLVDLANGQNIGSKFLVQSDRL
                     EGRKRWLFAAPQVGEIVVDFGAEQALLQHKSLLPVGVSAIKGEFTRGEVIKIFSQDGK
                     ALALGIARYSSEALLRIKGKKSKEIESLLGYEFGSVAVHSDEMVVY"
     gene            35901..36665
                     /locus_tag="PXA71_000153"
     CDS             35901..36665
                     /locus_tag="PXA71_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDL5104305.1"
                     /translation="MELGIDVLAILFAVATLAGFIDAIAGGGGLLTIPALMAAGLPPA
                     MALGTNKLQACGGSLSSSLYFIRKKAVNLKQIWLLILCTFLGSAAGTIFVQMINVDFL
                     KTLLPFLILIIGIYFLVSPKIGDEDRKQRISFTLFAFTAAVALGFYDGMFGPATGSFM
                     TLAFILLLGFNLSKAVAHAKVINFTSNFASLIFFTLGGAVMWKIGLIMMVGQFIGGTL
                     GAKMVMTKGKKLIRPMLVTMSFMMVGKMLYEQGIFN"
     gene            36668..37300
                     /gene="nth"
                     /locus_tag="PXA71_000154"
     CDS             36668..37300
                     /gene="nth"
                     /locus_tag="PXA71_000154"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDL5104306.1"
                     /translation="MNKAKRIEILTRLRNENPKPTTELNYSNPFELLIAVILSAQATD
                     KGVNKATDKLFPVANTPQAILDLGVDGLKEYIKTIGLFNSKAENIIKTCRDLIEKHNG
                     EVPEDRDALEALAGVGRKTANVVMNTAFGHPTIAVDTHIFRVSNRTNFAPGKNVVQVE
                     EKLLKVVPDEFKVDVHHWLILHGRYTCIARKPRCGSCIIEDLCEFKEKTE"
     gene            37497..38747
                     /locus_tag="PXA71_000155"
     CDS             37497..38747
                     /locus_tag="PXA71_000155"
                     /EC_number="2.7.7.72"
                     /EC_number="3.1.3.-"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional CCA addition/repair protein"
                     /protein_id="HDL5104307.1"
                     /translation="MDIYLVGGAVRDQLLGLPVKDRDFLVVGATAEQLLAQGFQQVGA
                     DFPVFLHPETKEEYALARQERKNGNGYNGFICDFSPNVTLEQDLIRRDLTINAIAQDE
                     NSTLFDPYGGVQDLENRLLRHVSPAFSEDPLRVLRVARFAARFHSFGFTIAPETLKLM
                     REMVQSGELKHLTAERVWLETQKAFETDNPHVYFDILRLIGALKVLFPELDRLFGVPQ
                     PPQHHPEIDSGKHTLMVLQQAKRLAKKAENPTALLFAALCHDLGKGLTPADILPHHYG
                     HEVKGIQPTRELANRLKIPTEIKDFALLVTEYHTHCHKMAELRPETVIKLFNSLDVWR
                     KPNRFFDFLFACEADARGRLGFEQRNYPQPELAKKYYQAAIEIDVQQVIQDGFEKQAI
                     REELNKRRVYAVRSIKLDSDLINH"
     gene            complement(38848..39783)
                     /locus_tag="PXA71_000156"
     CDS             complement(38848..39783)
                     /locus_tag="PXA71_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HDL5104308.1"
                     /translation="MSESKPFPITTGFFAMPLGLGALGLAWLNATPITPYATTIGNII
                     AGTSVILWVALLGCYVYRVFFCFEQIKAEFMHPVQCCLFSLVTMTTMISGDVLYVWDF
                     YLGELLIFLGVIVHLIFLVFIIGGLWKGTQFLPETLHPVHYLPPIAGSFTMASSLSLI
                     GYSEIASLFLGIGIISWLVYEPTMLQRIRLSPLFPIARPSLGIVLAPAFVGASAYFSM
                     GGELDLLAKMLWGYGFLQFCFILRNLKWIAENGFSMGFWAFSFGLAAMARGAIEFYQF
                     EPLSFIGLAGFTIANFGIGLLLIFTLKLWLQQSRA"
     gene            complement(39912..40106)
                     /gene="iscX"
                     /locus_tag="PXA71_000157"
     CDS             complement(39912..40106)
                     /gene="iscX"
                     /locus_tag="PXA71_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HDL5104309.1"
                     /translation="MKWTDTRMIAENLYDMNPDLDPTTVRFTDMHKWICEMEDFDDDP
                     EASNEHILEAILTIWLEEYE"
     gene            complement(40106..40447)
                     /gene="fdx"
                     /locus_tag="PXA71_000158"
     CDS             complement(40106..40447)
                     /gene="fdx"
                     /locus_tag="PXA71_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HDL5104310.1"
                     /translation="MPKIVFLPHEEFCPEGMVVEAKAGDNLLEVAHEAGVEIHHACDC
                     SCACTTCHVVIREGFDSLNDTSDQEEDMLDKAWGLEIDSRLSCQCIVGEEDLVVEIPK
                     YNLNHANEAAH"
     gene            complement(40466..40831)
                     /locus_tag="PXA71_000159"
     CDS             complement(40466..40831)
                     /locus_tag="PXA71_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 51 family protein"
                     /protein_id="HDL5104311.1"
                     /translation="MSNYVKTEISEQFRTVAVEFDLEDNRIFELGERINTEYDVAYMN
                     GYNWAAFLRAYLSIYRPSLLELLEEDPDVGCYYVTYPLSEKSKEKARELKKIIVYLVE
                     NEEEILNFIGEHLDNIEWD"
     gene            complement(40841..42694)
                     /gene="hscA"
                     /locus_tag="PXA71_000160"
     CDS             complement(40841..42694)
                     /gene="hscA"
                     /locus_tag="PXA71_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HDL5104312.1"
                     /translation="MALLQISEPGQTAAPHQHKLAVGIDLGTTNSLVATVRSGQTQVL
                     LDEQERALVPSVVHYAETEKTVGIEAFAKAALDPKNTVISAKRLIGRSLADVQQRYQN
                     LPYQFVASENGLPLIQTAQGNKSPIEVSADILSHLAQFAEKRLAGELSGVVITVPAYF
                     DDAQRQSTKDAARLAGLNVLRLLNEPTAAAIAYGLESGQEGVIAVYDLGGGTFDLSIL
                     RLRKGVFEVLATAGDTALGGDDFDHLLAEWIAEQANYKPQTASEQRELLTLATQTKVA
                     LSQAVEFEVKFANWTGVVSRSQFNELIQPLVKRSLMTCRRALKDAGVEAEEVREVVMV
                     GGSTRVPFVREQVGEFFGKTPLTSIDPDKVVAIGAAVQADILVGNKPDSDMLLLDVVP
                     LSLGIETMGGLVEKIIPRNTTIPVARAQEFTTGKDGQTAMTIHVLQGERELVEDCRSL
                     GKITLRGIPAMAAGVAQVRVTYQVDADGLLNVTAMEKSTKVQASIQIKPSYGLTDEEV
                     TQMIKSSMANAKEDMEARQLVEQRVEADRVIDSVVTALKEDGSAVLSVEEFQAIEAQL
                     ARLIELKEGTDRFAIQQGIKEVDLATQEFAARRMNLSIQKALAGKKMDDLA"
BASE COUNT        13069 a         8960 c         8498 g        12168 t
ORIGIN      
        1 ccgcttgtta cttaaacagg cgatggatag tgctaaatgt attcgaaaaa ttgatataaa
       61 acaaacaaat gcgtatttta aagcgatttt tttaaactaa atgtcaaaaa tttgaagtat
      121 gtaacatttt ttatttttca attttcgtat aatcaaccca gttttaaatt tataactatt
      181 atgaggtaac cactatgtta aatcgtattg aacaagaact tgcagactta ggcattacaa
      241 atgtaaaaga aatcgtgcgt aaccctagct atgagcaact gtttgaagaa gagatgaaat
      301 cggatcttaa aggttatgaa aaaggcgtcc taacaaattt aggcgcagta gcggtagata
      361 ccggcatttt cacggggcgt tcgccgaaag ataaatatat cgtattagat gaaacgacaa
      421 aagataccgt ctggtggaca tctgatgcag ctaaaaatga taataaaccg atgactcaat
      481 ctacttggca aagtttaaaa accttagtga ccgatgagtt atctaataag cgtttattta
      541 ttattgatgc tttctgtggt gcaagccctg agcatcgcat caatgtgcgt attattaccc
      601 aagttgcgtg gcaagctcac tttgtgaaaa atatgtttat tcgtccaaca gaagaagaat
      661 taaaagattt caaaccggat tttgtggtaa tgaacggttc ccaagtaact aacccgaact
      721 ggaaagagca aggcttaaat tcagaaaact ttgtggcatt taatatcaca gaaggtgttc
      781 agatcattgg cggtacttgg tacggtggtg agatgaaaaa aggtatgttc tctatgatga
      841 actacttctt accattaaaa ggtgtcgctt caatgcactg ttcagccaat gtgggcgaag
      901 aaggtgatgt ggcggttttc tttggtttat caggaaccgg taaaacgaca ctatcaaccg
      961 atccgaaacg caaattgatt ggtgacgatg aacacggttg ggacgaaaac ggcgtattta
     1021 actatgaagg tggttgctat gcgaaaacca tcaacctttc tattgaaaac gagccggata
     1081 tttatcgtgc aatccgccgt gatgcgttat tagaaaacgt ggttgtgcgt gaagatggca
     1141 ctattgattt tgatgataaa tcaaaaacag aaaatacccg tgtgagctat ccgatttatc
     1201 atattgataa tattgccgtg ccgtcaaaag caggacacgc taaaaaagtg attttcttaa
     1261 cggcagatgc attcggcgta ttgccaccgg tgtctaaatt aacgcctgaa caaactaaat
     1321 actacttctt atcaggcttt accgcaaaat tagcaggtac agagcgtggt attactgagc
     1381 caaccccaac tttctctgct tgtttcggtg cggcgttctt atcactccac ccgacacaat
     1441 atgctgaagt gttagtgaaa cgtatggaag cagccggtgc ggaagcctat ttagtgaata
     1501 ccggttggaa cggcacaggt aaacgtattt cgattaaaga tacacggggt attattgatg
     1561 ccatcttaga cggctcaatt gagaaagcgg aaatgagtac attaccaatc ttcaatttag
     1621 caattccaac tgcgttaccg ggtgtagaaa cccacatttt agaccctcgt aacacttatg
     1681 aagacaaagc acaatggcaa gctaaagcag aagatttagc tggcagattt gtgaaaaact
     1741 ttgaaaaata tgcgaccaac gaggaaggca aagcattaat tgctgctggt ccgaagttat
     1801 aagttgtaat tataagttat aatcgctaaa aaattagttt aggactaaac cttgaatgag
     1861 gtttagtcct tttgtataaa ggagaagtac aataatgaca acattccaat taaggctgaa
     1921 agccaaagat gagcttaccc cacacccaac agcacaatat tggcgaaaat gccaagtgga
     1981 aggactattt gatctgccgt ttatggattt agtgtttaga gcggcacaag ttcaccgtga
     2041 aaattttgat gctaatgcga tccagctttc aacgttactc tcaattaaaa caggaggctg
     2101 tccggaagat tgcgaatatt gcccccaatc tgcccgctat gatacgggaa tagaaaagca
     2161 aacaatgctt gatgtagaga cgattgtaga aaaagctaaa attgccaaag agcgtggagc
     2221 aagccgcttt tgtatggggg ctgcgtggcg aggacctagg cctaaagata ttaaagtagt
     2281 ctcagaaatc atcaatgcgg tgaaatcatt ggggctagaa acctgtggta ctttcggtat
     2341 gcttgaagag ggaatggcag aagaattaaa gcaagcaggg ctggattact acaaccataa
     2401 tttagatacc gaccctgaac gctataacaa aattatccat acccgaaatc acgaagatcg
     2461 aatggacact ttaggtaaag ttcgcaatgc cggcttgaaa gtttgctgtg gcggtattgt
     2521 gggaatgaac gaaacccgcc ccgagcgagc aggcctaatt gcaagcctcg ctaacctcga
     2581 tcctcaacct gaaagcgtac cgattaatca gttgattaaa gtagaaggta caccgcttac
     2641 caatgccgaa gatttagact ggacagaatt tgttcgtacc attgcggtag caagaattac
     2701 tatgcctcaa agctttgtcc gactttctgc tggcagaact actatgccgg aggcaatgca
     2761 agccctctgt tttatggcag gagcaaattc tattttctat ggcgataaat tacttactac
     2821 agaaaatccg gaagaagatc atgatcgcca attaatggat aaattagatt tatatccgct
     2881 acaatatata gcctgagtgc caatgatttt cgcctgaatg aaaattaaag aatcaatcgt
     2941 tattttacgc aaatttctaa cataaaataa ccgcttgcaa aattcgttct tgtcttattt
     3001 ttaaatttat ctataatgtg aggccttacg caagcttgcg taattcgatg gggcgttatt
     3061 ggttcctcgc aatggtgttc agcttacttg atcaggttcg gaagaaagca gtctgggttg
     3121 aaatttccgt gtgccgaggg aggctggtaa tgccccaccc ttttttcagt tctatcagga
     3181 gaacgttatg ctccagatca cccccattcc ggcattaaaa gataattaca tttgggcaat
     3241 ccgtaacggg caagatgtga ttattattga tccatcagaa catcagccag cattaaactt
     3301 tattgcaaaa aatgcgttaa atttaaccgc tatcttgatt acccataatc accacgacca
     3361 tactgatggg gtgagtggta ttgttgagca atatccgaat atccctgttt atggtccgca
     3421 agaagtggct gaatttgcca atgtgattgt ctcgcctgaa caacatatca gcctgtttgg
     3481 ttatgatgta aggattattg aaagtggtgg gcataccgca gggcatatca gttatttatt
     3541 tggctatgat tatctgtttt gtggcgatgc gttattctcc ggcggttgcg ggcgggtttt
     3601 caccggtgat taccaagccc aatttgatgc gttacaacgc tttaaaaatc tgcctaactc
     3661 ggttaaagcc tacccggctc acgaatacac caagagcaat ttgaaatttg cagaagcggt
     3721 tctaccacca agctgtgtat tatcggaata tcaagaacag gttgatcttt tacgttcgca
     3781 aaacaaaccg actttgccaa ccactattgg cttggaaatg caggtgaacc cgtttatgca
     3841 agcggtcgat ttagccgaat ttattgcact tcgtcagcaa aaagacaatt tttaacctca
     3901 tatttctaat taagcattaa agcctctcac tttaatgctt tttggttaaa taaaaccttt
     3961 gcaaacatcg cttgtcaatt ccactctggc ttatcctatg gtatagttac gactattttt
     4021 agcttaattt attattttag tgagtaaaat tctgtgaact tcgatcctca aaatatgcct
     4081 aagcacgttg ccattattat ggatggcaat ggcagatggg ctaagcagaa aggaaaatta
     4141 cgcatttttg gtcatcagaa tggtgtaaag gcagttcgtt ctgcagttag ttttgcagca
     4201 aagcatcata tccaagtttt aaccctctac gcatttagca gtgagaattg gagcagacca
     4261 gaaactgaag tttcagcttt aatgtctctg tttatgaaag ctttagattc tgaagttaaa
     4321 caattacata aaaataatat tcgcttaaag attataggcg ataaatccgc ctttagcgaa
     4381 aatttacaaa aacgcattgc cgaatcggaa aaattaaccg aaaacaatac tgggctaatc
     4441 ttaaacattg ctgccaacta tggtggttac tgggatattg ttcaagctgc tcaacaacta
     4501 gcagtgcacg ttaaatctga acaacttgct gtggagcaga ttacaccagc attgtttcaa
     4561 caacatttag tgacagaaaa ccagccgcaa gtggatttat taattcgaac cagtggtgag
     4621 cagcggatca gcaattttct attatggcaa attgcttatg ccgagctgtt ttttagcccg
     4681 gttttatggc ctgattttaa tgatgaggct tttagtgatg caatttatgc ttatcagcaa
     4741 cgtgaacgcc gattcggtgg ttgttaatat aaaaagaata aggaaataca atgcttaaag
     4801 aacgtgtact ttcagcgatt attatgatta ttgccgtgct ggctgccata ttttggctct
     4861 caccacttcc tttaacttta gtgttatcgg caattgttgt ggctgcaatg tgggaatggg
     4921 ctcaatttgc cggctttaaa caccctgtgc cacgtgcaat tgtggcaatg gtgacaatct
     4981 gcttattact ttttgcgatc gttgcgaata ctgattatat ccgagccacc cgttttatta
     5041 ctgatgagac tacccctatc ctctttattg gctgtatttg gtggttaatt gcccttgtcc
     5101 tagtggcaac ttaccccaac tcggcaaaac tgtgggaaaa atctgttgca gctaaattcc
     5161 tatttggact tgctacctta gtgccgtttt taattggcac gctcgcattg cgtttccata
     5221 attatgcatt tgatccatac caaggaactt atttattcct ttacgtctgt ttattagttt
     5281 ggggagctga ttcaggtgct tattttgctg gcagagcctt tggcaaaaga aaacttgccc
     5341 caaaagtatc tccgggtaaa tcgtgggaag gcgtaattgg tggcgtactc acctctagtt
     5401 tgattgcctt taccttttta caacttacac cggcaaatgt attcggcaaa gcattagcca
     5461 ctaccccatt tattttagtt tcggtcggta tggttgctat ttcagtctta ggcgatttgg
     5521 cagaaagtat gtttaaacgc caagcaggca ttaaagacag tagccagtta attcctgggc
     5581 atggaggtat tttagatcgt attgatagtt taaccgctgc cgttccgttt tttgctacat
     5641 tcttcttttt tgtactatag aatatgacgt ccatcattgc attttttatt ttaatttgcg
     5701 tactggtttt tgtgcatgaa tacgggcact tttgggctgc tcgcaaatgc ggggtaaagg
     5761 tgatccgttt ttcgatcgga tttggtaaag tcttatttaa gaaaaaagat aaacaaggaa
     5821 ccgaatttgt tttttcactt attcctctgg gcggctatgt acaaatgtgg aatgatgaaa
     5881 cggatatcaa cgctccagct caacaagctc ttaacacaaa atctgtattg caacgtgcat
     5941 ttattattat agccggtcct gctgcaaatt ttatttttgc gattttggca tactgggtcg
     6001 tttttattgc cggtattcca actgttaaac ctgttattgg ggaaatttta ccaaacacta
     6061 tcgcctccca agcaagaatt cctaccgaat tggaaattac aaaaatcggt catcaatcta
     6121 tccaagattg ggaaagtgca tctttagcac tagttggttt tgtgggcaat aaaaatgtac
     6181 cgttagaggg aaatatcaac ggcaactcaa cacaaaaata tgaactcgat ttatctaact
     6241 ggagtattga ctcagccaaa gaaaacccat taaccgcatt aggtattcgc cccaaaagtg
     6301 caaaagtcac cgctgaaatt aaacaagttg tcgaaaattc tcctgcaagc caagtgggta
     6361 ttcaagcagg tgatcgtatt cttcaaatta accagcagcc atttaattgg ttcaatttag
     6421 ttgaactggt acaagcaggt aaacctattg aacttaaaat tgaacaacga ggtcagatta
     6481 aagaccttgt cgtccaacca gaaaaaaaag acgaacgcta tattatcggg gtaataccaa
     6541 gttatgagcc tcttgcagat aaatatcgta ccgaattaaa atatgatatt cttaccgcat
     6601 tttataaaag tatcgaaaaa gtgtggtctc ttacccaaac catactccaa tttatcggta
     6661 atttaataag cggtgatttg tccattaaaa atttaggtgg gccaatttca atggcaaaag
     6721 gagccggtgc aacagctgaa atcggcttag tttattacct tagttttatg gctctaatca
     6781 gtgtcaattt gggggtaatg aacttatttc cacttttacc cttagatggt gggcaacttg
     6841 ttttattggc tgttgaagca attcgtggaa aagcattatc agaaaaaata caactcaaat
     6901 tccaacaaat tggatttgca ttcgtgctga gtttaatgtt attcgccttt gccaacgata
     6961 taattcactt ttaacaagcg gttaaaaaag gtgacttttt tgcaaaaagc accctgacat
     7021 caaaatccat aatatggatt taaactatat tcttaataat tttgcaaaac gatcatagga
     7081 taatttcaat gaaaaaatta ttactttcct ctcttttaat tgcaaacggt gtagttgctg
     7141 cacctttcgt agtaaaagac attcgtgttg aaggtgtgca acctacaaca ggcgaatcta
     7201 tcatttcatc tattccggtt agagtaggtc aaacagcaac ggatactgac gtatctaatg
     7261 tcgtccgcca tctattcagc caacaacgtt ttgcagatgt tcgtgcaaca cgagaaggca
     7321 atacgcttgt catcaaagtc gctgaaaaac cgattattgg caaggtagag atcgaaggta
     7381 accaagcgat tcctaaagat gccttagagc aaaatttaaa ggcaaactta attaaccaag
     7441 gtgaaatttt tgatgctgcc aagcttgaag cttttaaaga aggactaatc gaacattatc
     7501 actctaccgg ccgttatgaa gccaaaattg acacatctgt ttcgaataac accgaaggtg
     7561 gcgttaatat taagttagcg attaatgaag gtgaagttgc taaagccaaa acaattaagt
     7621 ttgaaggtaa taatgccttc tctgataaaa aattattaga aaacttagat attcaacctg
     7681 atgtttcttg gtggaatatt tttgaaagta gcaaattcga acaaaccgcc tatcaaaaag
     7741 acttagaaac attaagagat ttttatttaa atcgtggcta tgcaaaattt gctatccaag
     7801 ataccgatgt tcaattcaat gataataaaa cggaagttgc attgacctat aaattagatg
     7861 aagggtcaca gtaccatgtc agtgaaatgc gcattatcgg taatacagcc aatatggata
     7921 gccagctcaa cgccctacta aaagaattca agcctggtca attattccgt aaatcagacc
     7981 ttacacaaat tgaagaagag attaaatcta ttttagggga cgcaggttat ggttcagcta
     8041 aagtagatat ttatcctcaa tttaatgaag aaaataaaac cgtaaaaatc agttttgttg
     8101 tggatgccgg tcgtcgtatt tatgttcgta aaatccgttt tgaaggtaat ggtgtcactg
     8161 cagattcaac attacgtcgt gaaatgcgcc aacaagaagg tgcttggctt tccacaaaca
     8221 aagcttctct aggtaaagct cgtttagaaa gaaccggttt ctatgaaagt gttgatatgt
     8281 caatgccaaa tgtagaaggt acagccgatc aagttgatgt agtgtataaa attaaagaac
     8341 gcaataccgg tagtattaac tttggtatcg ggtacggcac ggaaaacggt atcagctatc
     8401 aagcaggaat taaacaagat aatttcttag gtatggggtc aactatcagt ctaaatggta
     8461 cccgtaataa ctacggtacc agcgttaacc taggctatac cgaaccttac tttactaaag
     8521 atggtgtaag tttaggcggt aatattttct atgaagatta tgataactca gacaatgatt
     8581 caatggcttc atataaacgc caaacctatg gtattaacgg cacattaggc ttcccggtaa
     8641 atgaaaataa ctcatactac ttaggtttag gctatacgca cgataaaatt aaaaatgcag
     8701 cacgtgagta cactcgtgag aaatatgtaa aatcaatgaa ctttgagttc gatccagctg
     8761 ccgattatta caaaaaaatc aaagctgatg attttgattt ttctctcggt tggaactaca
     8821 acagcttgaa tagaggctat ttcccgactg aaggaactac cgcaaacatt ggcggtaaaa
     8881 tcacaattcc aggctctgat aataaatatt accgagtcag tgcagacttt agaaattatt
     8941 acccgttaaa ccgtgagcac aaatgggtaa tttcaacgaa agctagcatt gcttatacta
     9001 atggatttgg tggtaaagaa gttccgttct atcagcttta tactgccgga ggtattggta
     9061 cactaagagg tttctcttac ggtgcagtag ggcctcaagc gatttactat aatacaaaat
     9121 ccggcaaatt tgatagcatg aataatgata ttatcggtgg taatgcgtta gctgcggcaa
     9181 gcttggaatt aatcacacca acgccatttg tgagcgaaaa atatcagcac aatgtaagaa
     9241 cctctctctt tgttgatgct gcaagtgcat ggaatacaaa atggaagaaa gatgaatata
     9301 cgaacttgcc tgactatggt gatttcaaac gtttccgtgc ttccgccggt attgcattcc
     9361 aatggatgtc tccaatcggg ccattatcat tctcttatgc gaaaccaatt cgtaaatatg
     9421 ataatgatga tattgaacaa ttccagttca acattggtag ttcattctaa ttaaccacaa
     9481 gcggttaata aatgtaaaaa atttgcaact tagccgctta tttcaaaact gttcatacaa
     9541 ggaaaacaaa tgaaaaaatt atttaaaatg actggcttag ccgtagcttt agcctctaca
     9601 accggaatcg cgaatgctgc agatactatt ggtttcgtag atccaagcta tgtattacaa
     9661 aaccaccctg tattattaga tgcttcggca aaatttgata aattcatgaa agaaagccaa
     9721 gaaaaatttg ctgctgatga aaaaaaatta gcagatgaaa ataaaacctt aacggctgag
     9781 cgcaataaaa ttaatgaaga tgcgcaaaaa ttacaaaatg aacaaaaaaa tgtagaagct
     9841 tctatcaaga aaaaagtggc agcattagag aaagatgcgc ctcgcttacg ttcaaaagag
     9901 attcaagcac gtcaaaatgc gattcaaaaa gaagcaaacg cattccaagc taaagtaaca
     9961 gcaattcaaa aacgtgaagc tgattttgca aaaaaagcag aagccttcca gaaacgtgca
    10021 gatgaattcc aaaaacgtat tgaacaagcg aataaagaaa atggtggcat taacccacaa
    10081 gaagcgcaaa aacaagcggt tgatgaagta aatgcaacca ttaaagagat cgcaaaatcg
    10141 aaaggttaca ctttagtatt acaaccacaa gtagcacttt atgctgaaga tgaaggtaaa
    10201 gatattactg aagcagtact tgatgctatt gttaaaaaac atccggaaat taaaatagaa
    10261 aaacctgcaa ctgaagctca accagctaca gaaaaagaaa ccaaagctga agaaactaaa
    10321 ccagaagaag cgaaaaaata atggcaaatt tccgtttaat tgatttagcg gagcatatcg
    10381 gcggtactct taggggtaac gccgatttgg ctattcaaag tattgctgct ttagataaag
    10441 ccgacagctc gcaaattacc tttatctcaa atgcaaaata tcgggaaaat ttgaccgctt
    10501 gcaatgctgg agctattatc gtcagcccgg cagatgtaga attttgccga gcagatcaaa
    10561 atcttatcat cgttgccaat ccgtatgttg cttatgctca actggctcaa tatatggatt
    10621 ctactccgaa agcagcgagc gaaatccacc caagtgcggt gatttcacct gaagctaaac
    10681 tgggtaataa cgtatcggta ggggcaaatg ccgtgattga aagtggcgta gaattgggcg
    10741 atgatgccgt gatcggtgca ggctgttttg tgggaaaaaa cagtaaaatc ggggcaagaa
    10801 cccaactttg ggcaaatgtt tcggtgtacc acaatgtaca aatcggagct gattgcttga
    10861 ttcaatcctc aacggttatc gggagtgatg ggtttgggtt tggctatgcg aatgacaaag
    10921 ggcaatggat taaaatccca caaaccggtg gtgtgattat cggtaatcgt gttgaaattg
    10981 gtgcttgcac ttgtattgac cgaggtgcat tagatccaac cgtaatcgaa gataatgtga
    11041 ttattgataa cctttgccaa atcgcccata atgtacacat tggttttggc actgccgttg
    11101 ccggcggcgt cattatggca ggcagtctaa aagttggtcg cttttgccaa attggtggag
    11161 caagtgttat caacggtcat atggaaatct gtgatggtgc cataattacc ggaatgggta
    11221 tggttatgcg cccaattaca gaaaaaggaa tttactcatc aggtattcca ttacaaacca
    11281 ataaagaatg gcgaaaaacc gcagcacttg taatgaatat tgatgaaatg aacaaacgct
    11341 taaaatcgtt agaaaaacgt tttaacgatt aattttatta gaggtcttaa agtgacagaa
    11401 atgacaactg aaaatcgtga gccaaatatt attgaagtaa ccgaaattat ggatatgtta
    11461 ccgcatcgct accctttcct gttagttgat cgcgtaaccg attatgaaga agggaaatgg
    11521 ttaaaagcca ttaaaaatgt aaccttcaat gaaccttgtt ttaccgggca ttttcctggc
    11581 gcaccaatct tcccaggagt attgattctg gaagcaatgg ctcaagcaac tggcgtatta
    11641 gccgttgcca cttatggtaa gttaagtgaa gacgaactct actattttgc cgcaattgac
    11701 aatgctcgct ttaagcgacc ggttgtgccg ggcgatcaac ttcaacttga ggttgaattt
    11761 cttaaagaag tacgtggtat tactaaattt accggtaaag catacgttga tggcaaatta
    11821 gtctgtgaag cagatttaat gtgcgctcgc cgtaaataat tcgatataag cccaaactag
    11881 agggaacaaa ctatgcgtct aattgattca acagcaaaaa ttagcccgct tgccatcatt
    11941 gaagaaggtg ctgaaattgg cgctcacgtt gaaattggtc cattttcagt catcggtaaa
    12001 gatgtcaaaa tcggggctag aacgaaaatt cactcaaatg ttgtcattaa cggcatgact
    12061 gaaattggtg aagataacca tattttccaa tttgccagca ttggtgaaat caaccaagat
    12121 ctaaaatacc aaggtgaacc aaccaaagtg gtgatcggta atcgtaaccg tattcgtgaa
    12181 agtgttacta ttcaccgagg tacggtacaa ggcggtggcg tgacgaaaat cggtgatgat
    12241 aacttattta tgatcaacac ccacatcgca cacgactgct ctatcggtaa ccgttgtatt
    12301 atcgccaata atggtacgct agcaggtcac gttaccctag atgatttcgt gattgtggga
    12361 ggaatgtccg ccattcacca attcgttgtg attggttcac acgttatgct tggaggcggt
    12421 tcaatggtca gccaagacgt accgccttat gtcatggcac aaggtaacca cgcacgccca
    12481 tttggtatta actttgaagg gttaaaacgt cgtggctttg ataaaccaac tatgcacgct
    12541 attcgcaaag tctataaact gatttactcc agcggaaaaa cattggaaga gtgcctagta
    12601 gaaattgagc aaattgcagc aacagaacct gcgattgcta tttttaaaca attcttcaaa
    12661 cgttctaccc gtggtattat tcgttaataa acgaaacccc gaaatcaatt cggggtttgt
    12721 tttatcaagc gaccgtcgaa cctttcaaca attttcgaat ccaagctcga tttgggctaa
    12781 ggttatgcca aatatcctca ctgattggca caggctcatt cacaatcagg cttgctaaca
    12841 attcccctag aagtggtgca gtcgtcaaac ctcgagaaga caggccgttt accatataca
    12901 gattggtaaa aatttcagca ttttctaccg cttgtttccg tctcaactgg ttgtataaat
    12961 tggcatattg gcttttttgc tgctcaaaat gatgcactgc cccaaccatc ggtacacgat
    13021 cacgaaacgc cgcacgaata ccgactttgg ctttattttc agataaatca attccttgcg
    13081 tccactcaca aacggttaca ttttgctgaa gttttgcaac attctcccaa tgctccgata
    13141 aactaaactc ggtttctgca ttatcccgaa tatggcttgc tccaatgcaa tgcgtgccat
    13201 aggctgacat tggcgttaaa taaccatcat aacaaagcac acacttcagt ttttgtaatt
    13261 cgcttgtagt cggaatttgg ctcacttgcc ctcgtaccgg atacaacgga atgccgttcg
    13321 cttggctaaa ttcattcaac gtatgtccat ttgccagcac aaccgcttga tgtcgaaccg
    13381 tttctcccct cgtctgccat tgccacattc cattagaaaa ggttaaatgc tcaactttgt
    13441 gattcagtac aatcttcaac cctttctgct ccagccaagt aaagccattt ctaacaagtt
    13501 gtaccggtga aagccaacca gcttgcggaa taaatgcccc gctgtttggc acgcttaaac
    13561 ctaatttttc acttaattct gcctgtgaac aagattttaa taaggtgtca tcagccgtct
    13621 gctccaccat tttttccagt tttttagccg ttttctcgtc ataggcgtaa agcactaccc
    13681 cgcttaaatt atgctcaaac tcaatgttgg atttcagttg ttgcaagcgt tgcaatgcat
    13741 aatcaaaact atggatataa aactgtacat ttcgctcgtc atcatcgctt aactgtgggt
    13801 aaatcgcccc ttgtaaattt cctgaagcat ttattgccaa ggtttcatct ttgcaataca
    13861 gcgtgacttg cttgcctttt tctaacagcg ataacgcaac gaagaaactc gctactccgc
    13921 caccaataat tgcaatgtca tcagcggttt catttttggc ataaaaatag gggtaattag
    13981 gctcggaaac ttggctatct aacggtttct cgccccaaag catttctcgt tttttgccaa
    14041 atcctttgcg ttttttcact gcaaaacctg cggcttccag ccctcgtctg accatacttg
    14101 aagcggtaaa agtagcaaaa ctgccgccat tggcacttag tcgaaacatt tgcagatata
    14161 actgttcgtt ccacatttct gggtttttat caggcgaaaa gccatctaaa aaccaagcgt
    14221 caatcgtgcc gctataaaga tcgcctaatt ggggtaagtt ttcagcaatc tcaccgaacc
    14281 ataaatctaa ataaacctgc tcaaaatgat aacgttggca acctatttgg cgaggctgcc
    14341 aacaagcggt taaattttca gataatgttg caaattgcgg atagcgttgg tgaatatcag
    14401 ctaattggct ggccgtcaga ggaaatttct caaatgagat aaaatagagt cgttttagtt
    14461 tactttgcgg aaatgctgcc cgaaactgtt ggaatttgtc agcaacggct aaaaaattca
    14521 agcccgtgcc aaagccggtt tccgcaataa caaaagcctc tttcgggtga gattgccact
    14581 tttcccacag ttggttacct tcttgaaaca catagtaact ttccgccaaa ccatcttggg
    14641 tagaaaaata aatatcatca aattgctccg acaccggtgt atctgcatca ttaaatgtaa
    14701 gtgtcgcaaa agtcagttta cccatcatat ccccttaaaa acaaaacacg gaaaacccca
    14761 agattttccg tgtttcaacc agttcaatag taccaatgtt agaaaatgtt gctggcaaaa
    14821 ataacgatca taccaagtgc gcctacaacc gttagcattg aataaccaaa agtacccatt
    14881 ttacaatcct cattgttaat tatgattaaa acggctttat tctagcataa tttccatcgc
    14941 tttgaatgcc tatgcttgaa taattttgcc aaaacaagcg gtcaattttt gtaaatcttt
    15001 tacgcctttg gcactttcca cgccagaatt taaatctaac ccgacacagc cttgagcaag
    15061 ggcttgctca atattctcag tgccaatacc acctgccaat aacgcttttt gttttaaggt
    15121 ttctggaatc aacgcccaat taaaggtttt gcctgtgccg ccttgctgat tgcctacttt
    15181 gctgtctaat acataacgag caatctgtgg attatcgtta aattctagat tttcaacctc
    15241 aacatcaacc gataaggctt tccagatttg agttttacta cctaatttct ctgccagttc
    15301 tgcaatgtat tgctcatctt ccgagccgtg caattgaact gcaaataact caagctgttt
    15361 tgccattttt tccacaaatt cgaccgcttg attttggaac acccccacat aacgcaacgg
    15421 tgcattcacc accaattctt gggcttggcg aagtgaaagc tggcgaggcg agccttcggc
    15481 aaaaattaaa ccgccatata atgccccttg ctcataaacc gctttcacat cttgcacacg
    15541 ggttaagcca cacactttgt tttcaccaaa aatcaccgcc cgcaccgcat tattgagatc
    15601 ggcacttccc attaaactgc tgccgattaa aaaagcatga acatacggct taatgttttt
    15661 cacttgctgg tgatcgttaa tacccgattc tgaaatcaaa cagacatcag ccgaaatttg
    15721 ggcttggtat ttttccacca aacgcacaat gcggttcata tcaatcgtga gcgtgtgcaa
    15781 atcacggtta ttaacgccaa ttaccttcgc ccctaaggct aaggcacgtt caaattccgc
    15841 ctccgtgctg gtttcagtca aaacgcccat tcctaactcg tgagccagtg tggcaagttc
    15901 acggtaggtt tcatcattta ccaccgataa catcaataaa atcgcatcag cattataaaa
    15961 acgggcaagg taaacctggt atgccgaaat cataaaatct ttacacaaaa tcggctgtgt
    16021 ggtttggcgt ttgacttgat cgatataacg gaaatcgcct tgaaaatatt gctcatcggt
    16081 taaaaccgaa atcgccgcag cgtaattttt atacacttgg gcaatactgt ctaaatcgaa
    16141 ctcagcacga attaaccctt ttgacggtga agctttttta cattctaaaa tataagctgg
    16201 ttcttggtgt gtgcctttgg caagagccgc atagaaatca tggtcgcttt ttacaatttt
    16261 gtgctgaaat tcacttaacg gaaaggcttg ctctttttgt gccacccaaa tggctttatc
    16321 ttgtacgatc ttttgtaaaa tcgtcggttg gtttggttga gcgttatctt gaacgatgtt
    16381 ttgcatataa attcctagag cgaaatcggt ttgaatggta aaatctgccc ttatttttac
    16441 ccgaaaaagt ctcatttcac aagcaaaact aagatgaaat cacaagttat acagcattta
    16501 tcttatttag aaatcgccct gagagttaat caactttggg aggcgacacc accaagccct
    16561 gaagccttag ccaatgagca acctttctgc gtggaaacct taaccccaac ccaatggcta
    16621 caatggattt ttattcccag aatgcgggcc attttagatg caaatgccga tttacctcgc
    16681 aattttgcaa tcacccctta tttagaagag gcattgaaaa acgaaggtta tttacaagcg
    16741 atttgtgaac cgctattagg tttggaaaag ttgttgaaag attaacttct ctctcagttc
    16801 ttttattaat ctgacaaatt cgttgatagt gccagcgtcc acgctggtac taattttaac
    16861 ggttaattaa tcaaaatttg gcacaagcga ggacgcttgc gccatcatag agatttgata
    16921 aattatactt aatgtattat gaccttagat attttatacc aagacaactc gcttatcgcc
    16981 atcaacaaac ctgccggagt gttggtgcat cgttcttggt tagataaaca cgaaacggtg
    17041 tttgcaatgc aaaccctgag ggatcaaatc gggcaacacg tttttccgat tcaccgcctt
    17101 gaccgcccaa cctcaggtgt attgctgttt gctctcaaca gcgaaaccgc ccgaataatg
    17161 agcgagcagt ttgaacaaca cctagtacaa aaaacttatt tggcggtggt gcgtggctat
    17221 ttacaaggtt cggcacaaat tgattatccg ctcaaagtga ttttagataa aattgcggat
    17281 aaattttctc aggaaaaaga ggctcaagcg gcgattactg attataaagg cttagcaacg
    17341 gttgaaatgc cttaccctgt cggcaagcac caaacctctc gttatagttt ggttgaactt
    17401 agccctaaaa ccgggcggaa acatcagctt cgccgccacc tgaaacacct gttccacccg
    17461 attatgggag acagcaaata tggcgactta caccaaaacc gtgctttagt tgaaaaatca
    17521 ggcgtaagtc gtttaatgtt acacgcccat aaattgcaat ttcagcaccc gaaaaatttg
    17581 caaaaaatag agataattgc atcgcttgat gagcaatggc aacgcctctt tgcatttttt
    17641 gactggaact ttactcaata ttattagaca aaaaagagga ttgaatggat aattcacttt
    17701 tatcattgac acacgagcaa caacaagccg cagtagaaga aattcaaaaa ctgatggcac
    17761 aaggcatcag tgccggagag gcaattcaaa ttattgctaa tcaattacgt gacaaatatc
    17821 aaatattgga gaaatcaaac aatgaataaa ttatggacag tgcttgccct aacaataact
    17881 tcccactata gctttgctgc cgctgaaaaa atagtcacta aagatttacc ggcagaagga
    17941 aaacctgcag tcgtgctaca ggtttttgat gaaagtgaaa aaattgcaaa acctattaag
    18001 ggaaataagc tctttattag caaaaaacaa acaaggcttt gctggcacag tattaatctt
    18061 cctgtacaaa ataaagttac tattgcagaa gctttctatg cccctgctgc aatgaaatta
    18121 gcttctcccg gctctaaaat taattcttct gcagacaaga aaaatcatac tatcattact
    18181 gaaataaacc ttgcaaataa tcaagtatta aatcgttgct ggggttttga taaaactgac
    18241 cctgtcggta aatacaaaat ggaaattcaa attaacgatc acattttcaa aggtttagaa
    18301 tttgaaattg taaaataacc taaaagccac agagtaacac cctgtggctt tttgctaaat
    18361 cattgttttt aaattggtta aattgtgcag caaataatct ttactcttca caaaggctct
    18421 cgcctgttgc cagttgctaa attgttgctg agtgcattga ttaaaacgta ccagcacttc
    18481 caaactttca ttgccgacac aaataaaatc agctaataat tgggttaatt tttcactgtt
    18541 ttcaccatcc attgcagttg caattttctg ctcccattta accgcttgtc cgagcaaata
    18601 accccgctgg gctttgctta aattactcaa ccacatccca tccgcttttg gcattgcctc
    18661 aaccaaagta aataagtcgc ctagatttcc ttgcttgatt tcaaactcca attcacaaat
    18721 cggctcttca ccaaaatgat ttttaatgat gccctgatct aacgctacct caatgtcaga
    18781 catccccact tgcaccaacc aagttttacg agtgaaatcg gtgctgaata tcgcttgcaa
    18841 gctttctgca atctgctctg aattttcaaa cggcaactgg tatttttcca ctaatgtttg
    18901 aaaatccggc tggctattgg gtaaagctaa attatattcc ggacgaatat gcaaaccgcc
    18961 tacaatttcc ccttgtgttt ttaacgtgat ttcatattgt tgattcacag aacgcacccg
    19021 cagccccatt ttttgcgtgg caaaaaattg ctcgggcgta tcataatagg tgttgcctaa
    19081 caattccgtt tgatgagcaa gcacagggaa tggcgaggtt tgattcaagt agttttccac
    19141 taacgccaca ttctgctgtt ccaacattat tttcagttcg atttctgctt gtttttggtt
    19201 ttccatttca cacgcccctg caacgttgta taatcaagcg gttattttat caataaattt
    19261 tgcaaaatgt tttcaaaaat tcaccataaa ctgaataact ttgtccagcg tggactcgac
    19321 aaccatttac gcctcgccgt taccggctta agccgtagtg gcaaaacggc atttattacc
    19381 agcttggttg atcagctttt gcatatcaac aaaggcggta attcgcattt aaacctgttt
    19441 gcgcctgcac gccacgggca aattctatcg gtaaaacgcg ttgagcaagg ggatttaact
    19501 attccccgct ttgaatatga taaaaaccgc caaagccttg aaaatcaacc acctcaatgg
    19561 cctgaatcca ccactggcat tagcgaaatt cgccttgcga ttcgctacca gcggcaacat
    19621 tctctgctac gtcatattaa agaaaccggc acgctttatt tggatatttt cgattacccg
    19681 ggcgaatggc tgttagattt acccctgctc tccctttcct ataaagaatg gtcgcaaacg
    19741 caacaaacca tacataaaga tgagcgtgca gagcttgcca caccttggtt acaagcggtt
    19801 aaaaaactcg atctttttgc aaaaaccgat gaaaatttac tggcagaatt cagccaacaa
    19861 tacaccgatt atttgctcgc ctgcaaagct caaggaatgc aatatattca gccggggcga
    19921 tttgtgttgc caactgaaaa tgccaaaggt gcaccggtat tccaattttt tccgttatta
    19981 gatttaagcg aagctgagtg ggaaaagttg gaacaaagcg acagaaacag tattttccat
    20041 accctcaaaa aacgctatga gcattaccag aaaaaaatcg tcaaaccgtt ttatgaagat
    20101 tacttctctc aatttgaccg ccaagtgatt ttggcagact gcctcacacc gttaaattat
    20161 ggctataacg aatttatgga aatgaaatta gggttacagc aactgtttaa acatttccat
    20221 tatggcaatc gttcgctatt tcaccgtctg ttttcgtcca acattgataa attgctattt
    20281 atcgcaacaa aggcagatca cattactagc gaccaagtgc cgaatttgga aagcctaatg
    20341 cgacaattag tgcaagaagg gggaagacac gcagaatttg atggtatcga aaccggctat
    20401 ttagccattt cctcgattca agcaaccgat gcggtgaaag tgactcagca agataaaatc
    20461 attaaagcga taagagggat ccgttccagc gatagaaaac aagtgacact ctaccctggc
    20521 agcgtgccaa atcgcatacc cgataaaaat tactggcaat ttaaccgttt tgaattcgac
    20581 caattcgagc ccaagcaact tgattatagc caagcgattc cacacttcag aatggattcg
    20641 gtgctacaat ttttattggc ggatatgttt gagtaaaatc ttgttgcata tttccattaa
    20701 aggtataaaa ttttatacat tatgaatact gtaatttccc aacgaaaacc aattcactgg
    20761 gttggatcaa ccttagatga tattcgtgaa tttccggata acattaaaag agaactcggt
    20821 tttgatcttg atttagttca gcaaggctta ttaccgaggg attttaaagc gatggcaaat
    20881 ttgggttcag gcgtaatgga aattcgagta aaagatccct caggggcttt tcgcttagtg
    20941 tatttagcta aatttaaaga tgcaatttac tgtttacacg ctttccaaaa gaaaacgcaa
    21001 aaaacagccc ctaaagacat tgctgtcatt aaagcacgct atgctgccgt aaaggagtta
    21061 gaaaatgaat aatattgata ctaaaattcg ccatactaca gaagctcagg gtaatgtttt
    21121 tgaagatctt ggtttcccta ttgatgaagc tcaaaaattg aaatctgcca gtcagcaact
    21181 gattgaaact aaactgatgc taatgaatga aatgagcaac tggattgata aaaataatct
    21241 caaacaatca gaagcggctt ctattctagg tgttagccgc cctcgaattt ctgatatggt
    21301 caatggcaag ttagaaaagt ttaccctaga taccttagtc acttttgttg caaaaaccgg
    21361 caaaacaatc caattgcaat tatcctgata tttgcaaaat tttactcaaa ttcaaccgct
    21421 tgttgctttt atcattcact aacaaggtta tttcaagtaa aattgtgact aattttttat
    21481 taataaacac aaattatggc aaaaaaacct aaagttgcat caaatacgat tgcgttaaat
    21541 aaacgtgcca gacacgaata tttcattgaa gatgaaattg aagccggctt agagctacag
    21601 ggctgggaag tcaaagcatt gcgtgccgga aaaggcaata tcagcgatag ctatgtcatc
    21661 tttcgccacg gcgaagcctt cttattcggg gcaatgatta cgcctttgaa tatggcatca
    21721 acccatattg tcagcgaccc gacccgcacc cgcaaacttc tactgaataa acgtgagtta
    21781 gactcactgt tcggtaaagt taatcgtgaa ggttatacca ttgttgccac ctcaatgtat
    21841 tggaaaaatg cgtgggtgaa agtaaaaatc ggcttagcca aagggaaaaa actgcacgat
    21901 aaacgtgaag atattaaaga ccgtgaatgg caagtggcta aacagcgtat tatgaaaaac
    21961 gccaatcgtg gctaaatgaa taattaccct ctccccttgt gggagaggga cagaaaaatt
    22021 gcgttcagca atttttcagg gaaaggggga tttgtaaaag ttcaaggaaa aacaacgctt
    22081 gccctctctc tgaaaaatat ttctgaacga aatatttttc ggtctctctc ccataaaggg
    22141 agagagtgaa acacaaattt aaactaagga acatacaatg atcgaccaaa acctacttcg
    22201 taccaattta gaagacgttg ctacagctct taaaatcaaa cgtaatttta ttttagatgt
    22261 agagcgagta aaaacccttg aagaacagcg taaaacgcta caagttaaaa ccgaaacctt
    22321 acaagcagaa cgcaacactc gctccaaaaa catcggtgcg gcaaaagctc gtggcgaaga
    22381 tatttcagct ttattagccg aagtagattc aatgggcaac gaattagaca cggcaaaagt
    22441 agaattggat aaagtacagg cagaaatccg tgagttgttg ctttctgtgc caaacttacc
    22501 ggcagatgaa gtaccactcg gtaaagacga tagcgaaaac ttagaagtat tacgttgggg
    22561 cgaaccacgt caattcgact ttgaagttca agatcacgtt acccttggcg aaaacttaaa
    22621 cggtttagat tttgctgccg gtgtaaaatt aaccgccagc cgttttgtgg taatgaaagg
    22681 taaacttgcc cgcttacacc gtgcattatc tcaatttatg ttggatttac acactgaaca
    22741 acacggctat gtggaaacca atgtgccatt tttagtcaat cacgacactc tatacggcac
    22801 aggtcagcta ccaaaatttg gcgaagattt attccatact caaccattaa cagggcaaga
    22861 tccaaacgag gtgcaacgcc cattcggttt gattccaacc gctgaagtgc cagtaacgaa
    22921 cttagtgcga gatgaaatca ttgatgaaga cagcttacca ctgcgttata ccgcccacac
    22981 cccttgtttc cgtgcagaag ccggttctta tgggcgtgat actcgtggtt taattcgtat
    23041 gcaccaattt gaaaaagtgg aaatggtgca aattgtcgcc cctgaaaaat caatggaagc
    23101 cttagaagaa ttaaccggtc acgcagaaaa agtcttacag cttttaggct tgccataccg
    23161 caaagtgcta ctctgcactg gtgatatggg ctttggtgca gcaaaaacct acgacttaga
    23221 agtttggcta ccggcacaaa acacttaccg tgagatttct tcttgctcaa atatgtggga
    23281 tttccaagcc cgccgaatgt ctgcacgttg taaagctaaa ggcgacaaga aaactcgctt
    23341 ggttcacacc ttaaacggct caggtttagc ggttggtcgc acactggtcg ctgtgttaga
    23401 aaactaccaa aatgccgatg gctctattac tgtgcctgag gtgttaagac cttatatggg
    23461 tggtttggaa gtaattaccg cttaagatta ataaatgaaa ccaatctcag aaatggggtt
    23521 ggttttttta ataaatctta tccctaatct ttttcaggat aattcataaa aatttcagta
    23581 actactcggc ggttttgcac tgtatctaaa cgaataggat ttttcattct ccctaaacga
    23641 aatgcaataa tggtgacttt tttcggttca tctattttat ctaattgata gaataccatt
    23701 atttcccgtt gataaaccgc tcgctttctg aaacgtaaat ccttgcgaaa tgcgacacct
    23761 gcttttggat aaaactgtaa accattgatg atattcgttt gagtatgctc cgaaaataat
    23821 ccatagaaaa taaactctaa tagattattt ttaaaatcaa cactaaccat ctaactgctc
    23881 ccaagcagtt aaatctcctc gtgataaacg ttcagcaata tcagcataaa attgtttcgg
    23941 tacttccctt tttacttggt attgagctga ttgttcttct aataaatgtt cttctatcat
    24001 cttgatttct tctgttgtcc actcttcatc ttctttatgt acaacaaaat cggtatctac
    24061 aatcacaata gacataccta gctccttcaa gtactggtta tatattctgt attttgcctg
    24121 ttctaaattc agctgtctag cttttctgtt actcacaatt tgcaaatttt tcatcaaatt
    24181 ccaccgcttg ccattcaaaa aaaggcgttt ttgcggtatc ctatcggcaa ttttttcagt
    24241 taaatttaaa ggttaaattt tatgcaacag cagtataacc caagtgagat tgaacctaag
    24301 gttcagcgtt attgggcaga aaataaagtt tttaaagcag ttaaagacgt taccaaagag
    24361 aaatactatt gcctttcaat gttgccttat ccgtcaggta agctacatat ggggcacgtt
    24421 cgtaactaca ccattggtga tgtagtgtct cgttatcagc gtatgatcgg taaaaatgta
    24481 ttacagccga tgggttggga cgctttcggt ttaccggcgg aaggtgctgc ggtgaaaaat
    24541 aataccgcac cggcaaaatg gacttacgaa aacatcgaat atatgaaagg tcagcttaaa
    24601 atgttgggct tctcttatga ctgggatcgt gaagtcacca cttgccgtcc ggaatactac
    24661 aaatgggagc aatggttctt cacagaactt tataaaaaag gcttagtgta taaaaaaacc
    24721 tcaaccgtaa actggtgtcc gaatgatgaa actgtgcttg ccaacgagca agttcacgaa
    24781 ggttgttgct ggcgttgtga caccccagtg gaacagcgtg aaattccaca atggtttatc
    24841 aaaatcactg actatgctga agaattactc aatcagttag ataatctccc acagtggccg
    24901 gatcaagtaa aaaccatgca acgcaactgg atcggtcgtt ccgaaggggt agaaatcacc
    24961 tttaaaattg ccggttcaaa cgtagaatta ccggtttaca ctacccgtcc ggataccttc
    25021 ttcggcgtaa gctatgtggc gattgctgcg gctcacccat tagcagaatt agctgcacaa
    25081 aataacccgg cattggctga atttatccgt gaagcgaaaa acaccaaagt ggcagaagca
    25141 gaattagcca ccatggagaa aaaaggaatg gcaaccggct tgttcgccat tcacccgtta
    25201 acaggaaaag aagtaccggt ttgggttgct aactttgtgt taatgcacta cggtacaggt
    25261 gcggtaatgg cggttccggc tcacgatgag cgtgactttg aatttgcaca aaaatacgat
    25321 ttgcaaatta atcaggtaat tcaaccgctt gatggctcag agtgggattt cagcaaagcc
    25381 gcttacaccg aacacggtaa attaatcaac tctgccgagt ttgacggctt ggaatttgat
    25441 gtggctttca ctgcgattgc cgataaatta gaggcaatgg gtgtaggtaa acgccaagtg
    25501 aatttccgtc tgcgtgactg gggtgtttct cgtcaacgtt attggggtgc accaatccca
    25561 atgatgacca cagaagaggg cgaagtggtt accgttccat tacaagattt accggtgatt
    25621 ctccctgaag atgtggtaat gaacggcgtg caaagcccaa tcaaagccga cccagagtgg
    25681 gcgaaaacca cttacaacgg caaaccggca ttgcgtgaaa ccgatacctt cgataccttt
    25741 atggagtcct cttggtatta tgcacgttat acttgcccac aatatcacga aggaatgtta
    25801 gattcagacg aggcaaacta ctggctaccg gtcgatcaat atatcggcgg tattgaacac
    25861 gccacaatgc acttgctcta cttccgtttc ttccataaat tgttgcgtga tgcgggtatt
    25921 ttaaattcgg acgaaccggc gactaaactg ttatgccaag gtatggtgct tgccgatgcg
    25981 ttctactaca ccagcccaac taacgagcgt atttgggtca gcccgacaca agtcacctta
    26041 gaacgtgatg agaaaggtcg tatcatcaaa gcaaccgatc cacaagggcg tgagctggtt
    26101 cacagcggta tgactaaaat gtcgaaatca aagaacaacg gtatcgatcc gcaagaaatg
    26161 gtggaaaaat atggtgctga cacagttcgc ttgtttatga tgtttgcctc ccctgcggaa
    26221 atgacattag aatggcaaga atccggcgtt gaaggggcaa aacgtttctt aggtcgtgtt
    26281 tggaatttag tttatagcta tgcccaaaat ccggcaacga ctgcattaga tgtgaatgcc
    26341 ttagacaagg atcaaaaaga acttcgccgt gatgtacaca aaacgattgc taaggtgagt
    26401 gatgatattg gtcgtcgtca aaccttcaat acagcgattg ctgcggtgat ggaattgatg
    26461 aacaagctca ccaaagcccc acttgaaacc gaacaagata aagccgtaat ggcagaagct
    26521 ttaagtgcgg tggtgcgtat gctttaccca atcacgccac atatctgctt tgagttatgg
    26581 caagtgttag gtaatgaaca aaccatcgat tttgcccctt gggtacaagc cgatgaatcc
    26641 gcaatggtgg aagatgaaaa attagtggta gtacaagtca acggaaaagt gcgtggcaaa
    26701 atcactgttt cagctactgc tacggaagat gaagttaaag ctatcgctaa agccgatcca
    26761 aacgttgcta aattcttaga tggtcagcag attgtaaaag aaatctacgt tccatttaaa
    26821 atgttgagct ttgcggttaa ggcgtaacaa acacactctc ccttatatgg gagagagacc
    26881 gataaatatt tcgtgcagaa atatttatca gagagagggt acaagcggtt attttcttgg
    26941 aaaattttgc aaaaaatagc cccctctccc tgctttttct tctaaacgaa gaaaaacctg
    27001 tccctctccc acaaggggag aggggaataa acaaggaaat ctcattatga ttaaaaaact
    27061 ctctctcatc gctgtttttg ctcttaccgc ctgcggttgg cactttaaaa acaatgaggt
    27121 attacctgaa tcgttcagaa cattaacctt tgaaagtgca gatcaacaca gcgaaatgtc
    27181 tcgaatttta cgcaatcagt tacaactaag cgatgtaaaa ttagtgccta gcacggctaa
    27241 tgtggcaaaa ttacgtttgg tttcaacctc aacagacagc aaagtggttt ctgtgtttaa
    27301 acaagctcgt gaagcagaaa aaatcttaac gctaaacgtt gatgcgattg ccgatattcc
    27361 aaataaaggg caataccctt tagaagtttc ggttcatcgt actttctttg atgactctcg
    27421 tgcagctttg gcaaagtctg ctgaaaaaga gatgattatg aaagatatgt atgaacaagc
    27481 ctctcgccaa ttaattatca aaatggcggg cttaaaaaaa gaactctcaa aataatcatt
    27541 gtaggggcga aatatgtttc gcccattgtt tatctgtatg caaaaaatct ttccggaaac
    27601 acttcaattt tcattaaaca aaggactaca gcccttttat ctattaacag ggaatgatct
    27661 gctattggtg aatgaaacca aagatgccat tattcacacc gcccgtctca acggttttga
    27721 tgaaaaaaaa gaagttgaaa tcaaaaacga tactaactgg gaagaacttt tcgaagcagc
    27781 tcaatcaatg ggattgtttt ttgcacgcca aattatggtg ctgaattttc cggattcccc
    27841 cacagcgaca cagtttaaaa aactggctga gctttgtgcc tttattcata gtgatttgct
    27901 ctttatcctg cacttaccta aattttccaa aacaatggaa aaacaggctt ggttcacgca
    27961 aattgagcta aatctcgtgc aaattaactg ccaaacaccg gaacttagca aacttccaca
    28021 atgggtcagt catcgagcaa aagcgatgaa tttgcaaatt gaaaatgaag caaaccaact
    28081 cctttgttat agctacgaag gcaatctact ggcgcttaaa caggcattac aactgctaca
    28141 actcaatgca actgatggaa aaatcacgct gacaaaagcc caagaagtgg ttgaacactc
    28201 cgcccaattt actccatttc aatggattga tgcattattt gaaggaaaaa tccaaagagc
    28261 tcaacgcatt ttgtaccatc tgcaaaatga agaagtacaa gcggtcgttt tattaagaat
    28321 tgtgcaaaaa gagttgatga ttttactcga aatcactcgc aacccaaccg cagtcgtttc
    28381 cagcgaacaa tcacttttta tcggtaattt acgaacagaa tttgaccgct tgaaaatttg
    28441 gcaaaaccgc agaccttttt acaaccagat cactcaacga ctgacttacc aaaaacttta
    28501 cgccctaatc caacaactgg ctgaattaga gcgtaaggtg aaacaagaat ttagcgatga
    28561 tatttggcaa gaattagagc gtttttccgc tcaatttacc taactaatac ttttctaaat
    28621 cttcgctaaa caactccgct tcttcactgg cgatagagtg cttttctgcc gcccaatcgc
    28681 ctaaatcaat aatttgacaa cgctcgctac aaaacgggcg gtatttactt tctttactcc
    28741 acaccacttc tttttcacaa gtcgggcagt ttacaatagt ttctggcatt ctttttcctt
    28801 ttttgctaat gctaagtatt tataatgtaa ggcttgaacc tgctctttaa ttaaaagcaa
    28861 gccctgttca aatggcaagt tattttcaat cacatcatca gcataactta atctttcttc
    28921 acggctgact tgggctgcca taatattttt aatggtttca attttactgt tatcacgttt
    28981 ggttgctctt tccagttgga tttcaggaga aacatcaaca accaatatac gatcacaata
    29041 ttcggtgagc ttattttcaa ttaaaagcgg cacgacccaa atcacataac aagcggtcga
    29101 ttcttgcaat ttttttacca tttcttctcg aatggcgggg tgaagtaaat tattgagcca
    29161 cgttttttcc tcttcattgt taaacacaat ttggcgaagt ttagtgcgtt ctaatgcttt
    29221 ttcagcggtt aagatctctt caccaaaatg ctctacaatc ttggctaaaa gcggtgtacc
    29281 cggttcaaca acttggcgag ccaccacatc agcatcaatt acctctaccc caagagctga
    29341 aaataaatca gacactgtgg ttttgccact gcctattcca ccggttaagc ctacaacgta
    29401 agtcataaaa attgattcct caaaataaaa acaaaccaat tctagtaatt aatccctctg
    29461 ctttcaagca ttagcaccag caacatcgct gtgctaataa acggaataaa cgccaatttt
    29521 gctaatttct gctttttcat tagccaataa gccaagtaat aaccaatccc tagcaggctg
    29581 gcggttaata tcaataagag cattttttcg agccgaaaga gtggggataa cgcaaccaat
    29641 aacaacatat cgcccgagcc aaatgcctcc tttttaaaca taagctgtga aaccaagcca
    29701 atcaacaggc aaaaagcaag ggtaaaggta aaagtttggt gttggaaatc ggctaaactc
    29761 tcccataaca ccaacaaaaa tataagcacg aggtagcgaa tatccgttag gtaatagcac
    29821 atatccagca gtgataaaaa acagagcaga ataaaaatcg tgccgataat agggctttcc
    29881 gagcagagca taatcaatgg aaaaaggaga aaaaatagat ttgccgatcg gggttgtttc
    29941 ggttgtagca ccgattgagc caaaaactgt tgctcggtta agccaatatt cactaatgaa
    30001 gttgtttctt ggtaaatttg gcgattgact cgaatggcaa atcgagggat ctccgctttg
    30061 agccaaaccg caatgaagag ggaaaacagt attaacatcg ctactccacc aaagccccca
    30121 tatcaaaaat cggtaaatac agcccaacaa taatagtgcc gacaatcacg cccattatca
    30181 acattagcat cggttctaat agctgagaca aaatatcaat ttggtaatct aatttttgtt
    30241 ggtacatctc actaatatgc tcacacattt tcgccacatt gccacttttc tccccaacct
    30301 caagcatttg tgccatctca gcaccaaaca cattcgggtt gatcccttgt gaaaatttgt
    30361 agccttgttg taacaaatta agcatagtgc caatttcttg ctgtaaaatc gggtcatcat
    30421 ttttctcgga taaaaacgac ctcaaggcaa catcaagcgg aatatgagca ttcagcatta
    30481 aggcaatatt ttggctgaaa aagataatgc gagattgctc aataattcgg ctaaacagtg
    30541 gcattttagc ccatagagcc attttccact ttgcgactaa cctgctcttt tttgcaaaaa
    30601 acaggtaaaa aatgaccgct agtagtaacg tgccaagtaa tactgtgcct tgctcaatca
    30661 agcattcgga aagggtaaat aaaatatcgg taatgagggg taaagttttg tcttttgagc
    30721 cataaagttg ggcaaactgc ggtacaatca aaaccaatag cccgatagat aaagcgagcg
    30781 aaatcagcaa cacaatcacc gggtaaaaca ggattttctt cacttttttc gccaattttt
    30841 ccaatttcgc tcggctttca gctaaattag tcagcataat gcccagtttt ccgctttgtt
    30901 cgcccatttt gattagctga atttcctgat tggtcacaaa ttcacccaat ttctccaacg
    30961 attgtgaaaa agcatagcca ctttcaatat gctgaatcag ctcattaagc catagataaa
    31021 ggcggatatt tcggcagttt tgcaacaaca tagataatgc ctgttttaac ggcatggcag
    31081 aattaaccaa caatgcaagc tgtgatagca agctattcac ctcttctttt ttcgggtttg
    31141 ctgaaagcac aaaatttcgg ctaatccgaa tatgctgata accttgtgcc agcaaaaggt
    31201 tttccaacat gtctcgattc gttgccaacc gcttgccccg ctgtttttgc ccaaatcggc
    31261 tctgggcttg ccaatgaaat tcatagattt tcgtcattgc ctaagcaatt tctctttttg
    31321 tggttcaaaa tgaatatctg aggcgttgtg ttgcaaacag aacttaaata aattctctaa
    31381 aatttggata atcggatcgt ttctatccac ttgttccgaa tgagccaatg aatacgccgt
    31441 attctcctca taaatctcac tctgccgact actctgctca ggcgaaaggg cattgagtaa
    31501 aaacttcaat tcatcggagg aaatcaaaac aggctcaatc tgtttgtggt agataaacgc
    31561 aaaaatctca caggcattga gattttgcat atcatcaatc cctagccaaa gctgttcttc
    31621 tgtttcttgc agcggaatgg ctaaatatcg caataaaatc tgcttttcat tgcaattttt
    31681 ctgccactgc tctgctgaaa tctcgatgaa cctttggctg tttaaatccg ttaccgaata
    31741 ctccattttg atttcctcac ctcaaattag ccgtttggtg taacagttgt gctacagaaa
    31801 ttagctggaa ataggctcgt atcattgcca ctacaacttg ccgtccaact aatcgtatta
    31861 tttgagaacg acggtgttaa ggtatagcca taaccattca gagagccttt gccggttacc
    31921 gtaatcacgc cttttgttac cgcaattgag tttaggtatt tagtggtatt actactggtt
    31981 ttattcgcct gaatcccatt cgtgccaccg gagcagttat ccaacccgcc actgttgtaa
    32041 atacagactt caacgtctga tttatacgaa gcagatgctt gtaataactc cgataacgcc
    32101 gccttttggg tgtatgagtt ataggaaggg atcgcaatag tggcaagaat ggcaataatc
    32161 gcaatcacga tcatcaactc aatgagggta aatgcccgat gcagttggcg aatgccaagc
    32221 ggtctaaaat gtacaatttt ttgcatataa attccttata aattgcacca acaaattgtg
    32281 gcgaatcaag tgtgcaaatt ttttgcctgc tttgcgaccg gcaaatttta atttttcgac
    32341 gcagatcgaa aaaataaaat ttttatctgt ttatccatac agttttttgt tagaatttgc
    32401 caaatttact caattaggaa tcaagaatgg caaaagcacc taaaaccgct tatgtttgta
    32461 acgattgcgg ggctgaatat tcccgttgga tggggcaatg taaggaatgt aaggcttgga
    32521 ataccatcag tgaagtgcgg ttgatttcca gcaaagaagc ggcgaaatct gaccgcttta
    32581 gcggctatgc cggtgaaacg tcaggcaaag tacaaacgct gtctgacatc agcttgcagg
    32641 aagtgcctcg ctttagcagt ggctttaacg agctggatcg tgtactcggt ggcggcgtag
    32701 taccggggtc agcaattctg atcggcggtc acccgggggc ggggaaaagt acgttattac
    32761 tgcaagtaat gtgcggttta gcccaacatc tgccaacgct gtatgtcacc ggtgaagagt
    32821 cgttacaaca agttgcaatg cgggcaaatc acttaggctt accaacggca aatctgaaaa
    32881 tgttgtctga aacctctgtc gagcatattt gcaatattgc agatcaagaa aagcccaaaa
    32941 ttatggtgat tgactcgatt caggtgatgc acttgtcgga tattcagtcc tcacccggca
    33001 gtgtttcaca agtgcgtgaa tgtgcatctt tccttacccg ctacgccaaa acccgccaag
    33061 tggcgattat tatggttggg cacgtcacta aagatggcac gcttgccggc ccgaaagtgt
    33121 tggaacacgc catcgatgct tccttgctgt tagaaggcga atccgattcc cgtttccgta
    33181 ctttgcgtag ccagaaaaat cgttttggtg ccgtcaatga attgggcgta tttgcgatga
    33241 ccgaacaagg gctaaaagag gttaaaaacc catctgcgat ttttttaagc cgtagcgaag
    33301 agcaaacgcc gggcagttcg gtgatggtgt tatgggaagg aacacgccca ttgttggttg
    33361 aaattcaagc cttagtcgat cactcaatgc tggcaaaccc tcgccgtgtg gcggttggct
    33421 tagatcataa ccgtttatcg ctattacttg cggtgctaca ccgacacggt ggcttgcaga
    33481 tgtcggatca agatgtgttt gtaaatgtgg tcggtggggt gaaagtcacg gaaaccagtg
    33541 ccgatttagc cttaattttg gcgttaattt ccagcttccg taaccgtcca ttgccgcaag
    33601 atttggtgat ttttggggaa gtcggcttag caggggaaat ccgcccggtt accagtgggc
    33661 aagagcggat cagcgaagcc gcaaaacacg gctttaaacg agcgataatt cctcacggca
    33721 atgtcccgaa aaaggcaatt aaagatatgc aggtgttcac cgtgaaaaaa ctcagtgatg
    33781 cgttagatat tctgtataat ctctaaaatc aagaaccgct tgtaagtctg tcttacaagc
    33841 ggtctgtttt aggtaaaaat ttacgaatgt gcggcagttg gtctattgcc tttggaaata
    33901 tagtataaat taatacacac caccaacgca tttaagccgg tgaccggaat cgagccaatc
    33961 agcaaaccat aaacaacgaa acaggcacaa cccagcgaat tcaccacccg cagtttaatc
    34021 acatctttta ataaaaaaga acaggcaact aaaatcatcg ccacatagcc gagtatttca
    34081 acatagtcca tttagaacct cctcaaataa aataaactgc cgatatttta aaggctgttt
    34141 ttttatttgt atctagctct aaaaatagca aaggtttgcg ttcacatttt tacttttaac
    34201 cgcttagtta ttaaacagat tttcgttcta aacacataaa acggcaacgg aaagggttat
    34261 tttcatcaat ttctgaccac ttttcttcta ctaacgccca attttgttca tcaaattcaa
    34321 agaacgtatc cccttcaatg tctgcttgaa tctcagttaa ataaagtctt tctgctagtg
    34381 gtaaggcttg cttaaacagt tcccccccac caataatcat tatttcagct gtatttgcaa
    34441 aatttttcgc taattcaacc gcttgttcga gcgattgtac cgcataagcc ccttccaccg
    34501 taaaacctga acgggaaaga ataatattag ggcgttttgg caataacctg ccgatagatt
    34561 cataggtttt ccgccccata atcaccggtt tgccgagcgt gttttggcga aaccaggcta
    34621 aatctaccgg caaatgccac ggcatttggt tatctttgcc aatcaccttg ttgattgttc
    34681 gggcaacaat aatgctgatt ttcatttttt ctcctgttat gcaaattggt ttgattttat
    34741 atcaaattaa gcgtgatttt acaccctaaa agtgatactt ttggcaacat tatttttagt
    34801 tacaagtgaa cagattatgt caaaaactat cgtgataaaa tttggcacca gcactctcac
    34861 acacggcact aaaagtttaa gccgtcctta tatgttagag ctggtaaagc tcaattacac
    34921 caacagcatc gtgtgattgt ggtgacatcc ggagctgccg ctgccggtcg ggactattta
    34981 ggacaccctg aactccctaa aaccttagcc tctaagcaaa tgttagcagc ggtcgggcaa
    35041 agtcagctca ttcgagtgtg ggaaaattta ttcgatattt ataatatcca tatcgggcag
    35101 atgctcttaa cccgagccga tctggacgat cgtgaacgtt tcctcaatgc ccgtgatacc
    35161 cttgatgccc tgcttgcaca aaaaatcatt ccggtgatta atgaaaacga tgccgttgct
    35221 accgaagaat ttaaagtagg cgataacgat aatttatcgg ctttagttgc gattttggct
    35281 caagcagatc agctctattt attaaccgac caagaaggct tattcagtgc cgatcctcgc
    35341 tcaaaccctg atgctaaatt gctctcggtg gtggaaaaaa tcacgcctga aatccgccaa
    35401 attgccggtg gtagttcaac cggtttaggc acgggcggaa tgagtaccaa aattactgct
    35461 gctgatattg ctacccgctc cggtgtggaa accatcatcg cctccggttc tcgcccaaat
    35521 gtgttagttg atttagcaaa cgggcaaaac atcggcagta aatttttagt ccaatctgac
    35581 cgcttggaag gcagaaaacg ctggttattt gctgctccgc aagtgggtga aattgtggta
    35641 gatttcgggg cggaacaagc cttgcttcaa cataaatcat tactgccggt gggagtttct
    35701 gccatcaaag gcgaatttac tcgaggtgaa gtaatcaaaa ttttcagcca agacggcaaa
    35761 gccttagcac tcggcattgc ccgttatagc agtgaggcat tgctgcgaat taaaggtaag
    35821 aaatcaaaag aaattgaatc gctccttggt tatgaatttg gttctgttgc agtgcatagt
    35881 gacgaaatgg tggtgtatta atggaattgg gaattgatgt tttagcaatc ttgtttgccg
    35941 ttgcgaccct tgccggcttt atcgatgcca tcgctggcgg cggtggctta ctcactattc
    36001 ctgcattaat ggcagcaggg cttcctccgg caatggcact tggcacgaat aaattacagg
    36061 cgtgtggcgg atcactctct tcctcactct attttattcg caaaaaagct gttaatttaa
    36121 aacaaatttg gttgctaatt ctatgcactt ttttaggctc tgccgccggt actatttttg
    36181 tgcaaatgat caatgtcgat ttcttaaaaa cattgttgcc tttcttaatt ctgattatcg
    36241 gcatctattt tttggtcagc cctaaaattg gcgatgaaga tcgtaaacaa cgcattagct
    36301 ttaccctatt tgcctttacc gccgctgtcg ctctcggttt ttatgatgga atgttcggac
    36361 cggcaaccgg ctcttttatg actctggcat ttattttgct gctcggcttc aacctctcta
    36421 aagccgtagc acacgccaaa gtgattaatt ttacctccaa ctttgcctca ttaattttct
    36481 ttacgcttgg tggtgcggta atgtggaaaa tcggcttaat tatgatggtc gggcaattta
    36541 ttggcggcac actaggtgcg aaaatggtga tgacaaaagg caaaaaatta atccgtccga
    36601 tgctagtgac tatgtctttt atgatggtcg gcaaaatgct ctacgagcaa ggaattttta
    36661 attaacaatg aataaagcaa aacgtattga gattttaacc cgtttacgca atgaaaatcc
    36721 aaaaccgaca actgaactca attacagtaa tccgtttgaa ttattaattg ccgtgattct
    36781 atccgcccaa gcgaccgata aaggcgtaaa taaagccacc gataagctct tccctgtcgc
    36841 caacacgcca caagcgattt tagatttagg cgtagatggg ctaaaagagt acatcaaaac
    36901 tatcggctta tttaacagca aggcagaaaa tattatcaag acctgccgag atctgatcga
    36961 aaaacataac ggcgaagtgc ctgaagacag agatgccctc gaagcccttg ccggtgttgg
    37021 cagaaaaacc gccaatgtgg tgatgaatac cgcattcgga caccctacga ttgcagtcga
    37081 tacccatatt ttcagggtgt cgaaccgcac gaacttcgct cccggcaaaa atgtagttca
    37141 ggtagaagaa aaactgctca aagttgtgcc ggacgaattt aaagtcgatg ttcaccattg
    37201 gttgatttta cacggacgct acacttgcat tgcccgtaag cctcgttgtg gttcttgtat
    37261 tattgaagat ttatgtgagt ttaaagagaa gacggaataa cattatctgg tggtatttaa
    37321 tgaataactc ccctctttag aaaagtaggg gctgggggag atttgatact atttcaacat
    37381 ttcgtatgag cgtatagaaa ttctgccaaa tcttccctat cccctctttg ctaaagaggg
    37441 gaactagatc gagcgtaaaa tataacaagc ggtcattttt ttgagatttt ttgcaaatgg
    37501 atatttattt agtcggtgga gcagtgcggg atcaacttct tgggctgcca gtgaaagata
    37561 gagatttttt agtggttggc gcaactgccg aacaactttt agcccaagga tttcaacaag
    37621 ttggggcaga ttttccggtg tttttacacc ctgaaaccaa agaagaatat gcccttgctc
    37681 gccaagaacg caagaacggc aatggttaca acggctttat ttgcgatttc tccccaaacg
    37741 tcacgcttga gcaagatttg atccgccgag atttaaccat taacgccatc gcccaagatg
    37801 aaaacagcac actttttgat ccttatggcg gtgtgcaaga tttagaaaat cggctactcc
    37861 gccacgtttc tcctgcattc agcgaagatc cgctacgggt gctacgggtt gcccgctttg
    37921 ccgcccgttt tcattcattt ggttttacca ttgctcctga aaccctgaaa ttaatgcgag
    37981 agatggtaca aagcggtgaa ttgaaacatt taaccgctga acgtgtgtgg ttggaaacac
    38041 agaaagcctt tgaaaccgat aatccgcacg tttattttga cattttacgc ttaattgggg
    38101 cattaaaagt gctattccct gaactggatc gtctgtttgg cgtaccacaa ccacctcaac
    38161 accaccctga aattgactcc ggcaaacaca ctctaatggt gctacaacag gcaaaaagac
    38221 ttgcaaaaaa agcggaaaat ccgaccgctt tactctttgc agccctttgc cacgacttag
    38281 gcaaaggctt aacgcctgct gatattttgc ctcatcacta cggacacgaa gtcaaaggca
    38341 ttcaaccaac ccgagagtta gccaatcggt taaaaatccc aactgagatt aaagattttg
    38401 cccttttagt gaccgaatac cacacgcatt gccataaaat ggcggaactt cgccctgaaa
    38461 cggtaataaa actgtttaac agcctagatg tgtggcgtaa accaaaccgc ttttttgatt
    38521 tcctgttcgc ctgtgaagcg gatgctagag ggcgattagg ttttgaacag cggaattacc
    38581 cccaacctga attggcgaaa aaatattacc aagccgcaat cgaaattgat gtgcagcaag
    38641 ttattcaaga cggttttgaa aaacaagcaa ttcgggaaga gctgaataaa cgcagagtgt
    38701 atgcggtaag aagcatcaag ctagatagcg acctaataaa ccattaggtt atccgccact
    38761 ttctcaaaat caattcccaa agttcaagtt ggttaaatgt atggattctt taaaaggtgg
    38821 cgttatttta gtgaatttat aatgttccta tgctcttgat tgttgtagcc acaatttcag
    38881 ggtaaagatc agcaataacc caatgccgaa attggcaata gtgaagccgg ctaacccaat
    38941 aaaagataaa ggttcaaatt gataaaattc aatcgcacct cttgccattg cagctaaacc
    39001 aaatgaaaat gcccagaaac ccatcgagaa gccattttca gctatccatt tgaggtttcg
    39061 taaaataaaa cagaattgta agaatccata tccccataac atttttgcca acaagtctaa
    39121 ttctccaccc atagaaaaat aggcagaagc gcccacaaat gccggagcaa gaacaattcc
    39181 taaagatggt ctagcaatcg gaaaaagcgg actaagccga attctttgta acatagtggg
    39241 ttcatatact aaccaggaaa ttatgccaat gcctaaaaat aaagatgcaa tttcactgta
    39301 gccaattaag cttaatgaac ttgccatagt gaagctccct gcaattggcg gtaggtaatg
    39361 taccgggtgt agcgtttccg gcaaaaattg tgtgcctttc cataatccac caataataaa
    39421 aaccaagaaa attaaatgca caatgacgcc taaaaaaatc aatagttcgc ctaaataaaa
    39481 atcccataca tagagcacat caccgcttat catggttgtc attgtcacta aggaaaataa
    39541 acaacattgc actgggtgca taaattctgc tttaatctgc tcaaaacaaa aaaacacacg
    39601 atacacataa cagcctaata aggctaccca aagtatgact gacgttccag caatgatatt
    39661 accaattgtt gtagcataag gagtgatagg cgttgcattt aaccaggcaa ggcctaacgc
    39721 ccccagccct aatggcattg caaaaaagcc tgtagttatt ggaaaaggtt tagattcact
    39781 cataaattta tcctcatatt gaaataatgc ataactgtat tcggctttat aacagtcata
    39841 tgtaaaaaat tttatttttc taaccgcttg taataagaaa aacctaaagc acttgcttta
    39901 ggttcctact actattcata ctcttctagc cagatagtta aaatcgcttc aagaatatgt
    39961 tcatttgatg cttccggatc atcatcgaaa tcttccattt cacaaatcca tttatgcata
    40021 tctgtaaaac gaaccgtggt cgggtctaaa tccgggttca tatcatacag attttcagcg
    40081 atcattcggg tatctgtcca tttcattagt gcgctgcctc atttgcgtga tttaaattat
    40141 attttggaat ttcaacaacc aaatcttctt caccaacaat acattggcaa cttaaacggc
    40201 tgtctatttc caatccccaa gctttatcca gcatatcttc ttcttgatct gaagtatcat
    40261 ttaacgaatc aaaaccctca cgaattacca cgtggcaagt ggtacaagca caagaacagt
    40321 cgcaagcgtg atgaatttca acgcctgctt cgtgtgctac ttctaataaa ttatctccgg
    40381 ctttagcttc aacaaccata ccttccgggc aaaattcttc gtgtggaaga aaaacaattt
    40441 ttggcatttt aaagtttcct tattactaat cccattcaat attatccaga tgttcgccga
    40501 tgaagtttaa aatctcttcc tcattttcaa ccagataaac aataatcttc tttaattccc
    40561 ttgctttctc tttacttttc tcggaaagcg gataggtaac ataataacat cctacgtccg
    40621 gatcttcttc taataactct aataggcttg gacgataaat actaagataa gcccgtaaaa
    40681 atgcagccca gttataaccg ttcatatagg caacatcata ttcagtatta atccgctcgc
    40741 ccaactcaaa aatgcggtta tcctctaaat cgaattcaac cgcaacggtt ctgaattgtt
    40801 ctgaaatctc ggtttttaca tagttagaca tactgcctcc ttatgctaaa tcgtccattt
    40861 ttttaccggc taatgctttt tgaattgata aattcatacg ccgtgctgca aattcttgcg
    40921 tagctaaatc cacctctttg ataccttgct gaattgcaaa gcgatcagta ccttctttta
    40981 attcgattaa acgggctaat tgtgcttcaa tcgcttggaa ctcctccaca ctcaacactg
    41041 cagagccatc ttctttcaat gccgttacca cgctgtcaat cactcggtcg gcttctactc
    41101 gctgttcaac taactggcgg gcttccatat cttctttggc atttgccatt gaggatttaa
    41161 tcatctgcgt aacttcttca tcggttaagc cataagacgg tttgatttga attgaagcct
    41221 gcactttggt cgatttttcc attgcagtca cgtttaataa accgtctgca tcaacttggt
    41281 aagttacccg aacctgtgca acccctgctg ccattgccgg aatgccacgc aaagtgattt
    41341 taccgagaga gcgacaatct tcgactaatt cacgctcacc ttgtaaaacg tggattgtca
    41401 tcgccgtttg accgtcttta ccggtagtaa actcttgagc tcgagctact gggatagtag
    41461 tgttgcgtgg aataattttc tccaccaaac cacccatcgt ttcaatacca agcgaaagtg
    41521 gcacaacatc aagcaacaac atatcggaat ccggtttgtt tccaactaaa atatccgcct
    41581 gcactgccgc accaatggca acaactttat ccgggtcgat agaggttaat ggcgttttac
    41641 cgaaaaactc gccgacttgt tcacgcacaa acggtacacg ggtcgaaccg cctaccatta
    41701 ccacttcacg aacctcttct gcttcaactc cggcatcttt caaggctcgg cgacaagtca
    41761 tcagcgagcg ttttacaagc ggttgaatta gctcattaaa ttgcgaacgg cttactacgc
    41821 ctgtccaatt tgcaaatttc acttcaaatt caaccgcttg cgaaagtgcg actttggttt
    41881 gagttgccaa agttaataat tcacgctgct cgcttgccgt ttgaggtttg taatttgcct
    41941 gttcagcaat ccattccgct aataggtggt cgaaatcatc gccaccgagt gcggtatcac
    42001 ctgcggttgc taatacttca aacacacctt tgcgtaaacg caaaatagat aaatcgaaag
    42061 taccgccacc taaatcgtaa acggcaatca caccttcttg tccgctttct aaaccataag
    42121 caatcgctgc tgccgttggt tcattgagca aacgtaatac atttaaaccc gcaagacgtg
    42181 cggcatcttt ggtactttgg cgttgtgcgt catcaaaata agccggtacg gtaattacca
    42241 cgcctgaaag ctcaccggct aaacgctttt cggcaaattg tgccaagtgg cttaaaatat
    42301 ccgccgaaac ttcaatcggg cttttattac cttgcgctgt ttggattaaa ggtaaaccgt
    42361 tttcgctcgc gacaaattga taaggtaaat tttgataacg ttgctgaaca tctgccagag
    42421 aacgcccaat gagacgttta gctgaaatga cggtattttt cgggtcaagt gcagctttgg
    42481 caaaggcttc aatcccaact gttttttctg tttccgcata atgcactact gacggcacta
    42541 atgctctttc ttgttcatca agcaatacct gagtctgccc gctacgcaca gttgccacta
    42601 atgaattggt tgtacctaga tcaattccta ccgctaattt atgttgatgt ggtgcagcgg
    42661 tttgaccggg ttcagaaatt tgtaataatg ccatt
//
LOCUS       DANLRW010000004        42598 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.004, whole genome shotgun sequence.
ACCESSION   DANLRW010000004 DANLRW010000000
VERSION     DANLRW010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 42598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42598
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.004"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            53..529
                     /gene="greA"
                     /locus_tag="PXA71_000161"
     CDS             53..529
                     /gene="greA"
                     /locus_tag="PXA71_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDL5104313.1"
                     /translation="MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEE
                     VTYRIVGDDEANIKEGLISVNSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI"
     gene            complement(585..1001)
                     /gene="ndk"
                     /locus_tag="PXA71_000162"
     CDS             complement(585..1001)
                     /gene="ndk"
                     /locus_tag="PXA71_000162"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDL5104314.1"
                     /translation="MIQQTLSIIKPDATRRNLIGKILAQLEENGLTIKALKKVHLTRE
                     QAEGFYAEHKGKDFFEPLVEFMTSGSIVVSVLEGENAISHYRALMGATNPDNREKGTI
                     RDLYALSMRENSVHGSDSEESAKREIAYFFVPSEIV"
     gene            complement(1011..3089)
                     /gene="metG"
                     /locus_tag="PXA71_000163"
     CDS             complement(1011..3089)
                     /gene="metG"
                     /locus_tag="PXA71_000163"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDL5104315.1"
                     /translation="MANQKRKMLVTCALPYANGAIHLGHMLEHIQADIWVRFQRMRGN
                     EVHFVCADDAHGTPIMLNADKLGITPEQLIEKAKADHEADFASFNISFDNYHSTHSEE
                     NRQITTDIYKTLKANGFIKSKVISQLFDPEKNMFLPDRFVKGTCPKCKAEDQYGDNCE
                     VCASTYSPMDLINPRSAVSGATPVVKESEHFFFDLPSFEGMLKEWTRSGSLQPEIANK
                     MQEWFESGLQQWDISRDAPYFGFEIPDAENKFFYVWLDAPIGYIASFKNLCDRAGIDF
                     DEFWQKDSTTELYHFIGKDIVYFHSLFWPAMLEGSGYRKPTNVFAHGYVTVDGAKMSK
                     SRGTFIQANTYLKHLDPECLRYYYAAKLNDRIEDLDFNLDDFVQRVNSDIVNKLVNLA
                     SRNASFIAKRFEGKLAEKLDDEALFNEFTAQAETIANFYENREFNKAIRAIMELTDKA
                     NKYIDDKAPWVIAKEEGKEAELQAVCSMGIELFRVLMSYLKPVLPKLAERAEAFLQSE
                     LRWDNIATPLFGHTVAPFKSLFSRLEKKQIDAVIDETKALFAEANKKTENQTKGTQKV
                     EQQAVEKQENIAVEPISPEITIDDFAKLDLRAAKVLNCEAVPKSDKMLRFELDLGDHQ
                     RQVFSGIKAAYPNPEALIGRFVIVIANLAPRKMSFGMSEGMILSAGTGGANLFLLDAD
                     SGVQPGMQVK"
     gene            3239..4210
                     /gene="menC"
                     /locus_tag="PXA71_000164"
     CDS             3239..4210
                     /gene="menC"
                     /locus_tag="PXA71_000164"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HDL5104316.1"
                     /translation="MRQVKLYRYQLPIQTGVVLRKQPLKERQGVLVCLQEQEKVGWGE
                     IAPLPSFSQESLEQAENQAVNWLKAWQKGEPETLEQLFPSVAFGLSCALAELNNELGE
                     QANNQSAVLCYGDLEKLHTAFSQHTNPIGKIKIGLNPEQEGEQANLLLHTFPNLRLRL
                     DANRLWSLEQAVKFAEKIANEHKPRIQFIEEPCQALELSRQFATQTDIAIAWDETVRE
                     ANFLVKKEPNLTAIIIKPTLVGSLEKCVNLIQQAQKQGLVAVISSSLESSLGLTQLAR
                     IAQQYTPNSVPGLDTLNLMQHQLLRDWHDSSLPLVGLESEFVREVVV"
     gene            4455..5156
                     /gene="rsuA"
                     /locus_tag="PXA71_000165"
     CDS             4455..5156
                     /gene="rsuA"
                     /locus_tag="PXA71_000165"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HDL5104317.1"
                     /translation="MRLDKFIAENTGLTRSQAAKVLKSGVVTVNGNIEKSGAAKISQE
                     DEIYYEDQKLEWVEEGQYFMLYKPQGYICSHDDGEYPTVFQFFDYPLMTKLHTAGRLD
                     VDTTGLVLLTDDGKWSHRITSPKHHCEKTYLVTLADPVEDFYAQRLAEGILLRGEKEP
                     TLPAQLEILDDYNVNLTISEGRYHQVKRMFAALGNKVEALHRWRIGDVVLDERLEEGE
                     FRSLTSEEIASFNGK"
     gene            5146..6327
                     /locus_tag="PXA71_000166"
     CDS             5146..6327
                     /locus_tag="PXA71_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HDL5104318.1"
                     /translation="MESRRPSLSFFIILGMMAMLPPLAIDMYLPSFLDIARDLAVSQE
                     KVQTTLAVFTLGFGAGQLFWGPMADSFGRKIIILIGLVGSAIAAYFLTQVQNIETFYL
                     LRLVQGLCAAAPAVVLGALVRDLFERNLFAKLMSVIMIISMLAPLLAPIVGGYIAKYF
                     HWHSIFYVLVAMGILCVVLISWKIPETLAPEKRLPLSFGKTLSNFAILLKHRPTLGYV
                     LIGGLTFAGIFCFLTSGSIVYIGLYGVSQENFGYFFGLNMIVMVTMTAINSKMVVKVG
                     SETMLRIALAMQLLAGIWLALVAIFDLGFWAMAIGIPLYIGMLSTIGSNASAAILEQF
                     PQMAGTANGVAGTARFGVASLVGAGLSHIAVTSAAPMLLAMALCVMLAGVVYYFLCYK
                     R"
     gene            complement(6467..7786)
                     /gene="rlmD"
                     /locus_tag="PXA71_000167"
     CDS             complement(6467..7786)
                     /gene="rlmD"
                     /locus_tag="PXA71_000167"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HDL5104319.1"
                     /translation="MAIFYSEKSAKKPIKSPACQKATIQSLDYQGLGIAKINGKTWFI
                     ENALPDEQVEFKVLEEKRQYGRGQAVKILKKSANRRMPSCELYGQCGGCQMQHISLEL
                     QRKAKQQALFQRLQKLQTHAIDVQPMIIGNDKHYRRRAKLSIAIQQGKAVIGFRLQNS
                     NQIIPLAHCEVLVEPLANLLPKLKHLIENWQQPKKLGHIELVSADNTIALFFRHLGAL
                     SAQDNHNLRQFATQEQLSLFVMTSENHIEHLCGERPYYQIQGLKLHFSIRDFIQVNAT
                     LNEKMVEKALEWLELSNQDRVLDLFCGMGNFTLPIAERAKSVVGVEGVEPMVQQAREN
                     AVTSGLKNVEFYQTNLDEPFSDKPWAKEPFNKVLLDPARNGALFCLDHLTSLNPERIV
                     YVSCNPATLVRDAEKLLQLGYRLEKAAMIDMFPHTGHLESISLFLKS"
     gene            7871..9196
                     /locus_tag="PXA71_000168"
     CDS             7871..9196
                     /locus_tag="PXA71_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase
                     family protein"
                     /protein_id="HDL5104320.1"
                     /translation="MISSVWNERYLADKKREQDHRSPFQRDRARLLHSEAFRCLQAKT
                     QIHAVGEDDFYRTRLTHSLEVAQIGSSLREKLLADVEGFQAVCSEQEFAKNMANLTAL
                     LPDHSLVESLCFAHDLGHPPFGHGGEMALNYKMYAFGGFEGNAQSFRIMTQLEPYTET
                     AGMNLTRRTLLGVMKYPALLSQTSPIEPAEMSEARHINLHHFPQSKGIFDDNNHFFEW
                     VLAPLSEKDRRQFCTVQPNQDPKQPNKTQYKSLDCSIMELADDIAYGVHDLEDAIVGG
                     MVTPQSWQNAEKLLAECQSDWVKQRLPEIREKLFSQHRYERKDVIGALVNHFITNVRW
                     KALPEFDEPLLRYNAYLPESVACVLKILKDFVYQYVICDAKTQRVERKGQRILMELFD
                     ILSSDPMRLLPNNVRERWKNAEESKRARVICDYLAGMSDGQAFKLFESL"
     gene            9317..9616
                     /locus_tag="PXA71_000169"
     CDS             9317..9616
                     /locus_tag="PXA71_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104321.1"
                     /translation="MRFLPSEIYQPRGELVKADRQGNGEFEVEYRVSGNDVRGLAKSA
                     IAHAKRKGFHLVESDIHRDDADLKFKRGDQELDIEIEVKGRNRIEYKADLDLDKN"
     gene            9777..12689
                     /gene="rapA"
                     /locus_tag="PXA71_000170"
     CDS             9777..12689
                     /gene="rapA"
                     /locus_tag="PXA71_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HDL5104322.1"
                     /translation="MFLVGQRWLSESENNLGLGIVTSVDHRTVTINFPAAEEERVYAI
                     AVAPLTRVQFQAGDRINSIDGWQLEVSEVVENQGAVIYLGKRVDNGEEAVLPEMLLDH
                     KISFSKPQDRLFSAQIDRSDRFALRFNALQHQQAQYQSPLRGLRGIRASLIPHQLHIA
                     KEVGQRLAPRVLLADEVGLGKTIEAGMILQQQLFSGRAERVLVLVPESLQHQWLVEML
                     RRFNLKFSLFDEERCSDFDKQDENGDDVSENPFESEALVITSLNWLETSPQRANQVLA
                     ADWDLLIVDEAHHLEWSETESSIGYQLVERLSQQIPAVLLLTATPEQLGQESHFARLA
                     LLDSDRFYDYAEFVQEQAQYKPVADAVSSLLSDKPLSNDEQNAIAELLSEQDTEPMFR
                     AINSKKSDENDRLQARQELISELIDRHGTSRVLFRNTRQGVKGFPHREYHQISLEMPK
                     QYQNALKVMGMMGSVSQSDLLYPEYLFQRMNPNAKWAEFDPRIDWLITFLKNHRDEKV
                     LVICKQADTAIALEQVLREREAIRSAVFHEKMSIVERDKAAAYFAQQEEGAQVLISSS
                     IGSEGRNFQFAKDLVLFNLPDNPDLLEQSIGRLDRIGQKNDIQIYVPCFNLSAQQMLA
                     EWYHKGLNAFEETCPMGTAIFRELGEELQQFLQKPELSAQFDDFVAKTYKRQQYLKAE
                     LEKGQDRLLELNSNGGEAAQQLANDIAKEDNNPQLVNFALSLFDVIGVEQEDLGEQSI
                     VISPTGHMLVPDFPGLSEDGTTITFNRELALMREEVEFLTWDHPMIRNGIDLITSGDI
                     GKSAISLLVNNKLPAGTLLLEALYVVEAQAPKGLNLTRFLPPTPIRVLVDNKGNNIAP
                     QVSFAGLERQLKPVNKQMANKIAKMARADIEKLIKASEKAVEPQVQQVIETAKFEANS
                     KLKAELHRLESLKMVNKNIRADEVEALEQQLNASLAQLETANYRLDSLRVIVSNKA"
     gene            12816..13112
                     /locus_tag="PXA71_000171"
     CDS             12816..13112
                     /locus_tag="PXA71_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5104323.1"
                     /translation="MYIDLQYAVPLLFEYDPNKSQINLAKYGIDFEQAKLLWEDERKV
                     VLEACIEPELRYFLIGKIYDKYWTAFFTPRNDVIRLISVRRSRKKEISYYEKYH"
     gene            13096..13338
                     /locus_tag="PXA71_000172"
     CDS             13096..13338
                     /locus_tag="PXA71_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HDL5104324.1"
                     /translation="MRNTISAEELERIFDEGKEDILQYCDLSTAHRPGQMKRVNVDFP
                     NWMVEALDKQARHLGVPRQALIKMWIAEKLPVQSPR"
     gene            13350..14018
                     /gene="rluA"
                     /locus_tag="PXA71_000173"
     CDS             13350..14018
                     /gene="rluA"
                     /locus_tag="PXA71_000173"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HDL5104325.1"
                     /translation="MALIEYNPPLEPFLDEVYRDNHILVINKPSGLLSVPGNRPEYYD
                     SAMTRVQQKYGFTEPAHRLDMATSGILLFALSKAAEKELKRQFREREPKKHYIALLWG
                     KLGEKVGDKGEMNFPLICDWENRPRQKICYERGKKAITHYEVLAHYPNNIARVKLTPI
                     TGRSHQLRVHSLALGHPIIGDKFYANPLAKSLSPRLCLHAESLTITHPITRELMTFTA
                     EPTF"
     gene            complement(13996..14571)
                     /gene="ampD"
                     /locus_tag="PXA71_000174"
     CDS             complement(13996..14571)
                     /gene="ampD"
                     /locus_tag="PXA71_000174"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HDL5104326.1"
                     /translation="MPNLKIEQGCLTGQKQVPSPHFSQRPDQEDISLLVIHYISLPPE
                     EFGGNFIDLFFQGKLEPTAHPYFEEIKDLRVSAHCLINREGEITQYVNFNDMAWHAGV
                     SCFEGREKCNEYSIGIELEGSNNQPFTQAQYQSLANLTKAIQQSYPQITDERITGHCH
                     IAPERKIDPGQYFDWAYYKHLLNEAKKSAQQ"
     gene            14631..15473
                     /locus_tag="PXA71_000175"
     CDS             14631..15473
                     /locus_tag="PXA71_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HDL5104327.1"
                     /translation="MLSYRHSFHAGNHADVLKHIVQLLILRALKEKEKGFLYLDTHSG
                     VGRYSLLSFESEKTGEYLEGVARLWERDDLPEEVAFYIDELKKLNRGGKLKYYAGSPL
                     LAVQQLREQDRAILTELHPNDFPLLRQEFAKAKNVQTKRENGFQQLKSALPPKERRGF
                     VLIDPPYELKEDYELVVKAIEEGYKRFATGVYAIWYPVVLRQHTKRIVRGLMDTGIRK
                     ILQIELAVRPDSDQRGMTASGMIVINPPWQLETQMKKILPYLTEVLVPEGTGSWKVEW
                     ITPE"
     gene            15596..16237
                     /gene="pyrE"
                     /locus_tag="PXA71_000176"
     CDS             15596..16237
                     /gene="pyrE"
                     /locus_tag="PXA71_000176"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDL5104328.1"
                     /translation="MQQYKHDFIEFALSRNVLKFGEFTLKSGRISPYFFNAGLFNTGR
                     DLAKLGEYYAKAIQASGIEYDVLFGPAYKGIPIATTVAVALANLFDVDKPCCFNRKEA
                     KDHGEGGNLIGSPLTGKILLVDDVITAGTAIRESMEIINANNAQLAGVLIALNRKEKG
                     KGELSAIQEVERDYGCQVFSIVDFDDLVAFIETSPQYAPYLPKMREYREKYGV"
     gene            16411..17500
                     /locus_tag="PXA71_000177"
                     /pseudo
     CDS             16411..17500
                     /locus_tag="PXA71_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607068.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
     gene            complement(17565..18755)
                     /gene="metC"
                     /locus_tag="PXA71_000178"
     CDS             complement(17565..18755)
                     /gene="metC"
                     /locus_tag="PXA71_000178"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HDL5104329.1"
                     /translation="MSNYKNLSTKLVHTGRKKRNTQGAVNPVIQRASSLVFETLEEKK
                     HATQNRYKGALFYGRRGTLTHFSLQEAMCELEGGAGCYLYPCGAAAVTNAILAFVEQG
                     NHVLMTGAAYEPTQEFCNALLKRMGVSTTYYDPMIGEGLKALVQPNTKVLFLESPSSL
                     TMEVPDIPTLVRVAREINPEIVIMIDNTWSAGVLFPALEYGIDISIQAGTKYLVGHSD
                     VMIGTAVSNARCWDKLREGSYLMGQMVDADSAYITARGLRTLGIRLKQHEQSSIAVAN
                     WLAQRPEVKAVYHPALESCPGHEFFKRDFLGSSGLFSFELCEKLSNDKLANFLEHFEL
                     FSMAYSWGGFESLILANQPEEIAKIRPAIERKLTGTLIRIHVGLEAVEDLIADLEQGF
                     NRIR"
     gene            complement(18814..19353)
                     /gene="dsbB"
                     /locus_tag="PXA71_000179"
     CDS             complement(18814..19353)
                     /gene="dsbB"
                     /locus_tag="PXA71_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HDL5104330.1"
                     /translation="MLYFFKNLSQSRSAWFLLMLSCLILEGTALYFQHGMGLVPCVMC
                     IYERVALFGILFAGILGFLGNRYAIIRYLAILIWLGSAFKGLVLSIKHHDYQVNPSPW
                     NQCEFKVNFPQTLPLDQWLPQVFAPGPVNCSQSQWEMFGFSMAQWLIFTFAVYLIVAV
                     IVLISQFKRSRQRNNFMFR"
     gene            complement(19416..20957)
                     /gene="nhaB"
                     /locus_tag="PXA71_000180"
     CDS             complement(19416..20957)
                     /gene="nhaB"
                     /locus_tag="PXA71_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proton antiporter NhaB"
                     /protein_id="HDL5104331.1"
                     /translation="MSSIDALFKSFLGKSPEWYKLCILAFLIINPLIYFFINPFVAGW
                     FLVAEFIFTLSMALKCYPLQPGGLLAIEAVVIGMTNPHHIKEEIMANFDVILLLMFMV
                     AGIYFMKQLLLYIFTKLLVAIHSKKILSLSFCLSAAFLSAFLDALTVIAVIISVGTGF
                     YGVYHKVASGNNFEDSTDITNDEKIISNKEILEQFRGFLRSLLMHAGIGSALGGVMTM
                     VGEPQNLIIASQAEWGFIEFLLRALPVSLPVLICGIATCFLVEKYKLFGYGDRLPSKV
                     WVVLARYSQLKEQKMTKQDRLKMLVQAIAGIWLIIGLALHLADVGIIGLTIIIICTAF
                     CGITDEHTLGKAFQESMPFTALLIVFFSVVAVIIDLKLFEPIIAFVLSAEPHSQLSLF
                     YIFNGLLSMISDNVFVGTVYINEAKTALDAGIIDREQFDLIAVAINTGTNLPSVATPN
                     GQAAFLFLLTSSFAPLIKLSYGRMVYMALPYTIVLSIVGFLGLEFLLPSMTEVMINWG
                     WFITR"
     gene            21114..21839
                     /gene="fadR"
                     /locus_tag="PXA71_000181"
     CDS             21114..21839
                     /gene="fadR"
                     /locus_tag="PXA71_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HDL5104332.1"
                     /translation="MGHSDILKAQSPAALAEEYIVKSIWNNHFPAGSDLPAERELAER
                     IGVTRTTLREVLQRLAREGWLSIQHGKPTRVNDIWETSGPNIIGTIIKLDKSYLPVVI
                     ANVVSLRTRMAEAYIPEAIYLAPEESAKLFDGLDELENTAAAYAEFDYKLFRQFTFLA
                     NKPVYALILNSFKSMYHQVAKIFFADENNRQLTLSFYRSLLCTCLAKDSEKAAACMAK
                     NRQSSGEIWQKLSANIPESFGQL"
     gene            21854..22924
                     /locus_tag="PXA71_000182"
     CDS             21854..22924
                     /locus_tag="PXA71_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HDL5104333.1"
                     /translation="MNEIIFSLEPQDNARLQSLCGAFDEHLALIEKSFNLIIARTGFN
                     FTIQSEDDNHYSATLVQNSVKLIKQLYNETAPIKGKIKELDLEDIHLAIQESRMLLQN
                     QWQAGSQGEIAIKTKRGVIKPRSEHQQAYLRNILSHDISFGIGPAGTGKTFLAVAAAV
                     ESLERQEIRRILLTRPAVEAGEKLGFLPGDLGQKIEPYLRPLYDALFEMLGFEKAQKL
                     MERGVIEIAPLAYMRGRTLNDAFIILDESQNTTTEQMKMFLTRIGFNSKAVITGDITQ
                     VDLPRSQKSGLKHAMEVLKEVPELSFNFFDSKDIVRHPVVAKIVQAYDAWEAVDEERK
                     EQRKLEKLALEQEKILAQAEML"
     gene            complement(23050..25056)
                     /gene="tkt"
                     /locus_tag="PXA71_000183"
     CDS             complement(23050..25056)
                     /gene="tkt"
                     /locus_tag="PXA71_000183"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDL5104334.1"
                     /translation="MTERKVLANAIRFLSMDAVQKANSGHPGAPMGMADIAEVLWRDF
                     LKHNPTNPKWADRDRFVLSNGHGSMLIYSLLHLTGYDLSIEDLKQFRQLHSKTPGHPE
                     YGYAPGVETTTGPLGQGITNAVGIAIAEKTLAAQFNREGHKIVDHYTYAFLGDGCLME
                     GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTAQRFESYGWQVIRNVDG
                     HNPEQIKFAIENAQAETERPTLIICKTIIGYGSPNKSNSHDCHGAPLGDAEIQAAREF
                     LGWEHAPFVIPAEIYTEWDAKAKGTLAEKDWNAKFAAYEAAYPELAAEFKRRYAGELP
                     ANWEAESKAFIEKLQANPATIASRKASQNAIEAYAPILPEFLGGSADLASSNLTLWSG
                     SKPIRAEHNVDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFYEYAHNAVRMA
                     ALMKQRALFVYTHDSIGLGEDGPTHQPVEQTASLRQIPNLETWRPADQVESAVAWKAA
                     VERKDGPTALIFTRQNLAQQQRTAEQLANISRGGYILRECCEKGSCPDLILIATGSEV
                     DLAMKAADVLDAEGVKVRVVSMPSTNVFDKQDEAYRESVLPRSVTKRVAIEAQLADFW
                     YKYVGFDGRIVGMNSFGESAPADQLFKLFGFTVENVVAKAKEIL"
     gene            25419..25631
                     /gene="rpmE"
                     /locus_tag="PXA71_000184"
     CDS             25419..25631
                     /gene="rpmE"
                     /locus_tag="PXA71_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HDL5104335.1"
                     /translation="MKQGIHPEYKEITATCSCGNVVKTRSTVGKDLNLDVCGNCHPFY
                     TGKQRVVDTGGRVERFNKRFSIPSSK"
     gene            complement(25686..26741)
                     /locus_tag="PXA71_000185"
     CDS             complement(25686..26741)
                     /locus_tag="PXA71_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5104336.1"
                     /translation="MKSLVIKLFGTKKEKKTFKFSKIESVLLKPIGDAIGDAVVHIAH
                     LEQIKKALPNVKIAVLVTSRNKLIFSQANVVDMILEDKVSTYLSQRGHWDLYLDFKPT
                     FTTKSIILDSILKPKFIINFGKKQKSIYNLDTVKNYDFTTVFPKQVHFADYLNYAIFA
                     DFLEKNQVNYNLNIPNELSSFANTLWQEKKIRLLLNPQGSMREISTQELSELLSMIDK
                     RYVQHISCLLTNTTNSAEYLSKIKAPFEISLAPNSDILGYCALVNSADIVIAVDGGGV
                     HISCALGKKLLSFYANHPANIARWYPKPKKDVETFMVIADKWTEDNNDTRGFSLVAPA
                     KWLNHQFAKLIEKYTAC"
     gene            26789..27820
                     /locus_tag="PXA71_000186"
     CDS             26789..27820
                     /locus_tag="PXA71_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5104337.1"
                     /translation="MNIKATLRKARLVIGKAILDSKNTDLILSEIPNKILFLRHDGKI
                     GDYVVSSFVFREIKKQSPQTQIGVVCSQKNRYLFENNPYIDKLYLVKTKSIPDYIRGG
                     KQLAKEQYDVVIDPTVTLRNRDLLFLRTISAKHYVGYQKQKYRLFDLNVEDRKQHFSE
                     IYQDALALIGFENIETQYDVPLNATSNQSIKHYLYENQIRNYIALNLFGAGSARRFSE
                     QKINELLSCLKQHSDKPIVLLTFPEVTAKLCSFTKKYKNIFVYEKTKSVFDSIELIRF
                     ADLLISPDTATVHIASGLSKKIIAFYSSDEQNFIHWHPNNQAETHILRFRKSVNDLDF
                     AAIKPEWLK"
     gene            27822..28712
                     /gene="ilvY"
                     /locus_tag="PXA71_000187"
     CDS             27822..28712
                     /gene="ilvY"
                     /locus_tag="PXA71_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HDL5104338.1"
                     /translation="MDFQSLKLFLDIAQSRSFIRSAEKNYMTASTLTRHIQRIEEELG
                     QPLFLRDNRQVRLTEAGERFLAFAQQGWAEWQQLQNQLSPAQGDLEGELKVFCSVTAS
                     YSHLPPILGKFRQKYPKVDIKLSTGDPALALEQVQSLAADISVAGKPEFLPNNIVFHY
                     IDDIQLSIIAPRVASQATQFLQQSPIDWKNIPFILPVNGPVRKRIDRWFKEQKIKDPI
                     IYATVSGHEAIVPMVALGFGVALLPDIVIKHSPMNNQVSYVNLPSPITPFELGICVQQ
                     KRLQEPIINAFWQLLSDNSA"
     gene            complement(28846..31248)
                     /gene="lon"
                     /locus_tag="PXA71_000188"
     CDS             complement(28846..31248)
                     /gene="lon"
                     /locus_tag="PXA71_000188"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HDL5104339.1"
                     /translation="MAPRKKKAIELPLLPLRDVVVFPYMVMPLFVGREKSIQALRSAM
                     DSNKQLFLVTQQDPNKEEPNAEDMYGVGVIANIIQMLNLPDGTVKVLVEGQTRAKIEQ
                     IHDDENGFWAAIQPIYSEYDDENEELKAIAKTTLTEFENYVKNNKKIPAEIIAKLQKI
                     TLEDRLADTIASNLIAPVKKKQELLEQPNLIARFEALLIAMATEMDTLETETRIRNRV
                     KQQMEKNQRDYYLNEQIKAIQKELGNGDDVEQSELDKLKEKIDAAKLPTEVKDKLNTE
                     FKKLKAMPQSSSEATVVRGYIDWILQMPWHKKSAVKKDLAQAQEILDKDHYGLERVKE
                     RIVEYLAVQSRLNKLKGPILCLVGPPGVGKTSLGQSIANATGRKYVRMALGGVRDEAE
                     IRGHRRTYIGSMPGSLMMKMAKVGVRNPLFLLDEIDKMAQDMRGDPASALLEVLDPEQ
                     NKAFNDHYLEVDYDLSDVMFVATSNSMNIPPALLDRMEVIRLSGYTEDEKMHIARGHL
                     LAKQQENNGLKEGELTIEDSAILSIIRYYTREAGVRSLEREIAKICRKAVKALVLDKK
                     LKSITVSEKNIEEYLGVKRFDYGKMDSQNRIGEVTGLAWTEVGGDLLTIETASVAGKG
                     KFSYTGSLGDVMKESIQAAMVVVRSRAEKLGIAEDFHEKRDIHVHVPDGATPKDGPSA
                     GIAMCTALISSLTGNPVRKEVAMTGEISLRGKVLPIGGLKEKLLAAHRGGITTVIIPK
                     ENEKDLEEIPENAKAALDIHAVETIDEVLALALENPPMGIEILSKAEIKVKKSRAKAT
                     VQ"
     regulatory      31452..31570
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            31746..32843
                     /gene="ribD"
                     /locus_tag="PXA71_000189"
     CDS             31746..32843
                     /gene="ribD"
                     /locus_tag="PXA71_000189"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDL5104340.1"
                     /translation="MTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQ
                     KAGSWHAERNAILNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRD
                     PNPLVSGKGAAQLRAAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGK
                     IATYTGNSKWITGEAARANVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQPVRIV
                     CDSQLRTPLDSQLVQTARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLAD
                     LLQKLGELGIDSLLIEGGSQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIG
                     ELAQAVKLRLKSTELLGEDILLDYEVDLLRN"
     gene            33060..33707
                     /gene="ribE"
                     /locus_tag="PXA71_000190"
     CDS             33060..33707
                     /gene="ribE"
                     /locus_tag="PXA71_000190"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDL5104341.1"
                     /translation="MFTGIIEEVGQIAQIKKQGEFVVVTVKAKKILTDVHLGDSIAVN
                     GVCLTVTSFTQEQFTADVMSETLKRTSLGELSINSSVNLERAMAANGRFGGHIVSGHI
                     DGTGVVAEITPADNSTWYRIKAEPKLMRYIIEKGSITIDGISLTVVDVDAESFRVSII
                     PHTIKETDLGTKKIGSLVNLENDIVGKYIEQFLLKKEPENPQSKITADFLKNAGF"
     gene            33726..34925
                     /locus_tag="PXA71_000191"
     CDS             33726..34925
                     /locus_tag="PXA71_000191"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HDL5104342.1"
                     /translation="MFKFSTVEEAIQAIAQGKIILVSDDADRENEGDFICAAEFATPE
                     NINFMAKYGKGLICTPISTEIAKKLNFHPMVLENEDNHQTAFTVSVDHIQTGTGISAF
                     ERSLTCLKMLDENAKPEDFRRPGHVFPLVAKDGGVLVRNGHTEATVDLARLAGLKPAG
                     LCCEIMAEDGTMMQMPELQAFAQAHNMPFITIQQLQEYRRKHDSLVNVVSVVKMPTKY
                     GEFKAHSFVETISGKEHVALVKGDIGDGENVLCRIHSECLTGDAFGSQRCDCGQQFAA
                     AMNQVEQEGRGVVLYLRQEGRGIGLINKLRAYELQDRGMDTVEANLALGFKDDEREYY
                     IAAQMFEKLGVKSIRLLTNNPAKIEGLIEQGLNVVAREPIMVEPNEHDLEYLKVKQHK
                     MRHMFNF"
     gene            35131..35595
                     /locus_tag="PXA71_000192"
     CDS             35131..35595
                     /locus_tag="PXA71_000192"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDL5104343.1"
                     /translation="MATFQGNYIATGLKFGIVATNWHKIFIDQLLNGATDKLLRHGVE
                     EKNIDTVWVPGALEISIAAKKMAQSGRYDAIICLGAVVRGATSHYDVVVNESAKGISS
                     SALETGVPIINGILTVENLEQAIERSGTKAGNKGEECAMVAIEMANLLKALA"
     gene            complement(35641..37149)
                     /gene="lnt"
                     /locus_tag="PXA71_000193"
     CDS             complement(35641..37149)
                     /gene="lnt"
                     /locus_tag="PXA71_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HDL5104344.1"
                     /translation="MNFAKNPPFLTACLLAIILGAIGTFAYSPFDIWILAFASAAGLV
                     WSATLANRKTALWATFAWSIGYFCTGVNWVSVSMTQFGGVPTIVSYIAVFLLACYLAI
                     YNLLFSVVSHRLKLNNPFALAAIFTFTEYLRGVVFTGFPWLQFGYSLIDSPFAGIAPI
                     LGVEGLTFLVIVASSYLVKIIQQENKTVPSLMVLAVIFGLSFATRFLQFVQIDTEKQP
                     LVVSLVQGNIEQKMKWDPQHFNHSVRTYEQLILPLLGNSELIILPESAIPALENQISP
                     LLGSLDHLARQHGSEIIIGTLYQNEQEELFNSSVLLGEKEREYALHSNPRYNKHHLVP
                     FGEYVPFGSVLDWMREVFILPINLSQGSFVQPSFLAKNNRFNMAICYEIIFGDQLQQN
                     QKSQNSDYLLTITNDAWFGSSIGPWQHFQMARMRALELGKPLLRAANTGITAIVDANG
                     KVIEQLPQFTADALTATIVPTKGDTPFKQLGHWLIYSFSLFCVIASLLLRRK"
     gene            complement(37208..38107)
                     /gene="corC"
                     /locus_tag="PXA71_000194"
     CDS             complement(37208..38107)
                     /gene="corC"
                     /locus_tag="PXA71_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249295.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HDL5104345.1"
                     /translation="MSDEQQSVNTTEKSEKKSILHSLFSGLFQNEPKNREDLVEVIRD
                     SVENELIDSDTKEMIEGVMEISELRVRDIMIPRAQIVFIDANEPLDVCIDLIIESAHS
                     RFPVIRGEKDTIEGILHSKDLLKYLRSDSEPFNLQQVLRPAVIVPESKRLDRMLKEFR
                     SERFHMAVVVDEFGAVSGLVTIEDILEQIVGDIEDEFDEEEVKPIRQLSRHTYAVLPL
                     TDIKKFNEFFATDFNDEEVDTIGGLVMQAFGYFPKRDEQIELNGIDFKVTSANSRQLI
                     QLRVTLSDEQLEKMEKTSPNEEE"
     gene            38245..38853
                     /locus_tag="PXA71_000195"
     CDS             38245..38853
                     /locus_tag="PXA71_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HDL5104346.1"
                     /translation="MKLTKIALSLTALVVSSMSVAGTLSTSSMVDILAFDGQRVKSGT
                     TSVQMSENKTHQVVVEVGGTVEGDFFTSDQIILTFQGSAENAKLETPRLNSKLDLRKF
                     QENQTVAIKTDSGKVISHKQDFLKGEGFLAKTRVEDNLTKYNLAKKTASVEQFATAPL
                     EAKGQIVVDTNKVSQEELQLLFRKADKDTQKRFLEWAKKNIK"
     gene            complement(38934..39317)
                     /locus_tag="PXA71_000196"
     CDS             complement(38934..39317)
                     /locus_tag="PXA71_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104347.1"
                     /translation="MKTLKLGCIFSLALMLSSCTLTPEQQAERKAKQIRAEQDLQVQL
                     AKQCDVETAELMYQQFNPPLSQTEQEEKAFKKRYAEKVNAPMFQACYKLAWQNYKAQV
                     ELEEIRWNYDRDYMYRGWRYCYYCW"
     gene            complement(39347..39916)
                     /locus_tag="PXA71_000197"
     CDS             complement(39347..39916)
                     /locus_tag="PXA71_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HDL5104348.1"
                     /translation="MNETTINDFSLLCRLFGNLFYRHPTDPILAGTFNWLAQGGLRQV
                     WALNTDSQSENALTLLQKNANPTQLAASYQALFAENGAISPTISAYGLSVNNFVAFRQ
                     ERAMPELENADHIGLLFLTASWIEDNLDSALAQKILFEQFLLPCAGKFLGKIEAFDNG
                     FYKALAQLSRDALSAMADELEESELEAVE"
     gene            39975..40820
                     /gene="nfo"
                     /locus_tag="PXA71_000198"
     CDS             39975..40820
                     /gene="nfo"
                     /locus_tag="PXA71_000198"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HDL5104349.1"
                     /translation="MKYIGAHVSASGGVENAVLRSVEIGANAFALFTKNQRQWQAPAL
                     KAETIEKFKRFCKVHHFSAEQILPHDSYLINLGNPEAEALEKSRVAFIDEMSRANQLG
                     LKLLNFHPGAHLKQISEQDCLARIAESINIAVEKVPNVIAVIENTAGQGSNLGWHFDH
                     LATIIEQVEDKSRVGVCLDTCHLFSAGYDISSYEKSEAVFNDFNQTVGFHYLRGMHLN
                     GSKTPLGSRVDRHHTLREGTIGTEVFAFIMQNMHFNHIPMILETISPEIWADEIKFLR
                     TLELK"
     gene            40948..41520
                     /locus_tag="PXA71_000199"
     CDS             40948..41520
                     /locus_tag="PXA71_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5104350.1"
                     /translation="MKKNLFATTFKPVFIASILSVFGGYSSIAVASLSSKPATPNQII
                     ASKAERLAKSSSVFTNRANLPTSSAHTANYSGRINSVYHNWVGTRYRLGGTTKAGIDC
                     SAFVREVMGKAFSKDMPRSTAEQRHVGHSISKSDLRPGDLVFFRKNNHVGVYIGNGKF
                     VHASSSRGVTTSSLSESYWSRNYTQSRRVI"
     gene            complement(41587..42045)
                     /locus_tag="PXA71_000200"
     CDS             complement(41587..42045)
                     /locus_tag="PXA71_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5104351.1"
                     /translation="MASIRQISDQTAAYQPIPLYRDFNSSRSVKLDLNSLCIKRPRDT
                     FFIHVKNPNLIAWGIELDDLLIVEQTNQYLVNDLLVLEKDGEYKFYQFFNEIQNGEGI
                     AEKILFSLDVSESNLRITDWAEVKIAGVITNVVHQMRTRGAFTQAKQRVA"
     gene            complement(42219..>42598)
                     /gene="grcA"
                     /locus_tag="PXA71_000201"
     CDS             complement(42219..>42598)
                     /gene="grcA"
                     /locus_tag="PXA71_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HDL5104352.1"
                     /translation="KGVQITESSNSNLLNSFWLLDEAKNEARCLAAKAGFEEDQVVAI
                     SELGDIAYREVPVNVAPTIKVEGGQHLNVNVLRRETLEDAIQNPEKYPQLTIRVSGYA
                     VRFNSLTPEQQRDVITRTFTESL"
BASE COUNT        12567 a         8346 c         9290 g        12395 t
ORIGIN      
        1 ccctttcgtt ttaattcgta aaccgataat ttttagtaag gaaatagatt taatgaaaca
       61 aattcctatg acggtgcgtg gtgcagagca actgcgtgaa gaattggatt ttttaaaaaa
      121 tgtgcgtcgc ccacaaatta ttgatgcgat tgcagaagcc cgtgaacacg gtgatttaaa
      181 agagaacgcg gagtatcacg cagcccgtga acaacaaggt ttctgtgagg ggcgtattca
      241 agaaattgaa ggcaaattag gcaatgctca aattattgac gtcactaaaa tggcaaacaa
      301 cggcaaagtg atttttgggg caacggtgca gttagtgaat gctgatacag atgaagaagt
      361 cacttaccgc attgtgggtg atgatgaagc caatattaaa gagggcttaa tttcagttaa
      421 ttccccgatt gctcgtggtt taatcggcaa agaggtggac gattcagtca gcattaccac
      481 accgggtggc aaagttgagt ttgacattgt tggcgtagaa tatatttaat ctacgctagg
      541 gcgaattaca atagtggggc gaaaaaattt tcgcccctac tttattaaac aatctcactc
      601 ggtacaaaga agtaggcaat ttcacgtttt gccgactctt cggaatctga accgtgtacc
      661 gaattttcac gcatacttaa ggcatataaa tcgcgaatgg tgcctttttc acggttatcc
      721 ggattggttg cccccattaa tgcacgataa tggctaattg cattttcccc ttccagtaca
      781 gaaacgacaa tagatcctga tgtcataaat tccactaacg gctcaaagaa atctttgcct
      841 ttgtgttccg cataaaatcc ttccgcttgc tcacgggtaa gatgtacttt ttttagagct
      901 ttgatagtca gcccgttttc ttccaattga gccaaaattt tgccgattaa attacggcgt
      961 gtagcatccg gcttaataat agaaagcgtt tgttgaatca tcatcttctc ctatttaact
     1021 tgcattcccg gctgaacacc gctgtctgca tctaataaga acaggttcgc accgcctgtg
     1081 ccggcagata aaatcattcc ctccgacata ccgaacgaca ttttgcgtgg agcaaggttg
     1141 gcaattacaa tcacaaaacg cccgataagt gcttccggat ttgggtaggc cgccttaatg
     1201 cctgagaata cttggcgttg gtggtcgcct aaatccagct caaaacgtaa cattttgtct
     1261 gattttggca cagcctcgca gttcaatact ttggctgcac gtaaatctaa tttcgcgaaa
     1321 tcatcaatcg taatttcagg gctgattggc tcaactgcaa tattttcttg tttttcgacc
     1381 gcttgttgtt ccactttttg tgttcctttg gtttggtttt cggttttctt attcgcttcg
     1441 gcaaataagg ctttggtttc atcaatcact gcatcaatct gttttttctc aaggcgtgag
     1501 aatagcgatt taaacggtgc cacggtatgc ccgaataatg gggtagcgat attatcccaa
     1561 cgcaattcgc tttgtaagaa tgcttcggca cgttctgcca gttttggtaa caccggtttt
     1621 aggtagctca tcagcacacg gaataactca atgcccattg aacaaaccgc ttgtaattca
     1681 gcctctttgc cttcttcttt ggcgatgacc caaggggctt tgtcgtcaat gtatttattg
     1741 gctttatcgg ttaattccat aatggcacga atagctttat taaattcacg gttttcatag
     1801 aaattcgcta tggtttctgc ttgagcggta aattcattaa ataacgcttc gtcatctaat
     1861 ttttcagcta atttgccctc aaagcgttta gcgataaaac tggcgttgcg agaagcaaga
     1921 ttcactaatt tgtttacgat atcgctgttt acacgttgca cgaagtcgtc taaattaaaa
     1981 tctaaatctt caatgcgatc gtttaatttt gccgcatagt aatagcgtaa gcattccgga
     2041 tcgagatgtt ttaaataggt gttggcttga atgaatgtac cacgagattt cgacattttc
     2101 gccccgtcca ctgtcacata accgtgagca aacacattgg tcggtttgcg gtagccgctg
     2161 ccttccaaca ttgccggcca aaacaggctg tggaagtaaa caatgtcttt accgatgaag
     2221 tgataaagct cggtggtgga atctttttgc caaaactcat caaaatcaat gcctgcacgg
     2281 tcgcataaat ttttaaacga tgctatataa ccaatagggg catctaacca aacgtagaag
     2341 aatttgtttt ctgcgtccgg aatttcaaaa ccgaaataag gggcatcacg gctgatgtcc
     2401 cattgctgta aaccactttc aaaccattct tgcattttat tggcaatttc aggttggagt
     2461 gagccggaac gagtccactc tttcaacatt ccctcaaagc ttggcaggtc aaaaaagaaa
     2521 tgttctgatt cttttaccac cggagttgca ccggaaactg ccgagcgagg gttgattaaa
     2581 tccatcgggc tataggtaga ggcacatact tcacagttat cgccatattg atcttcggct
     2641 ttacatttcg ggcaggtccc tttcacaaag cgatccggca agaacatatt tttttctggg
     2701 tcgaacagtt gtgaaatcac tttgctttta ataaaaccgt tcgcttttaa ggttttataa
     2761 atatcggtag tgatttggcg gttctcttcg ctgtgggtgg aatggtaatt atcaaagctg
     2821 atattaaaac tggcaaaatc cgcttcgtga tcggctttgg ctttttcgat taactgctca
     2881 ggggtaatgc ctaatttatc ggcattaagc ataataggcg tgccgtgggc atcatcagca
     2941 cagacaaagt ggacttcatt gccacgcata cgttgaaaac gcacccaaat atctgcttga
     3001 atatgttcaa gcatatgacc taaatgaatt gcaccgttag catagggcaa ggcacaagta
     3061 acaagcattt ttcgtttttg gttagccatt ctttttctca ttaaaattag ggtaaaaatt
     3121 gccgtctatt ttagcccaaa agtggcaggt ttaccagttg gcgtgaattt attagagctt
     3181 tgggctaaca agcggtagaa tatgtttcgc ctctaaacct attttggata aaaatagtat
     3241 gcgacaagta aagttatacc gctaccaact ccccattcaa accggtgtag tgttacgcaa
     3301 gcaacctttg aaagaaaggc aaggggtgtt ggtgtgtttg caagaacagg agaaagtcgg
     3361 ctggggcgaa attgcaccgc ttccaagttt tagccaagag agcctagaac aagctgaaaa
     3421 ccaagctgtg aattggttaa aggcgtggca gaaaggagag cctgaaacgt tagagcagct
     3481 tttcccgtct gttgcctttg ggctaagctg tgcgttggct gaactgaata atgaattagg
     3541 cgagcaagcg aataaccaat cggcggtgct gtgctatggc gatttggaaa agttacacac
     3601 ggcatttagc caacatacga acccaatcgg taaaattaaa atcggtctca atcctgaaca
     3661 ggaaggcgag caggcaaatt tgctgttgca tacttttccg aatttacgcc taaggcttga
     3721 tgccaaccgt ctttggagct tggaacaagc ggtcaaattt gctgaaaaaa ttgcaaatga
     3781 acataaaccc cgtattcaat ttatcgaaga accttgccaa gcgctcgaac tttcccgcca
     3841 atttgccaca caaaccgaca ttgcgattgc gtgggacgaa accgtgagag aggcgaattt
     3901 tttggtaaaa aaagagccaa atttgaccgc tattatcatt aaacctacgc tggttggttc
     3961 gcttgaaaaa tgcgtgaatt taattcaaca agcacagaag caaggattag tagcggtgat
     4021 tagttcaagt cttgagagca gtttgggctt aacccaactg gctcgtatcg cccaacaata
     4081 caccccaaac agtgtgccgg ggttggatac gttaaattta atgcaacacc aattattgcg
     4141 agattggcac gactctagct tgccgttggt cgggctagaa agcgaatttg ttagggaagt
     4201 tgtggtataa tctcccaatt aaacactctc tccccttgtg ggagagagac cgcttatgag
     4261 cgttcagcga aataagcaga gagaggggaa gcggtcattt ttctaaaaaa gtttgcacat
     4321 ttcccctctc cctgattttt cttctggacg aagacgtatt tcccccctct ccctgatttt
     4381 tcttctagac gaagaaaaat ctgtccctct cccacgaggg gagagggtaa agtaatttat
     4441 ggtataaaaa tagtatgcgt ttagacaaat ttatcgccga aaataccggt ttgacccgtt
     4501 cacaagcggc taaagtgctg aaaagtggtg tggtgacggt aaacggcaat attgaaaaaa
     4561 gtggtgcggc aaaaatcagt caagaagatg aaatttatta cgaagatcag aaattagagt
     4621 gggtggaaga ggggcagtat tttatgctct ataagccaca gggctatatt tgttcacacg
     4681 atgatggtga gtacccaacg gtgtttcaat tctttgatta tccgttaatg actaaattgc
     4741 ataccgcagg gcggttagat gtggatacca cagggctggt gctgttaacc gatgacggca
     4801 aatggtcgca ccgtattacc tcgcccaagc accattgtga aaagacatac ttagtgacgc
     4861 ttgctgatcc ggtggaagat ttttatgcac agcgattggc agaaggaatt ttattgcgtg
     4921 gcgagaaaga gccaaccttg ccggctcaac ttgaaatttt agacgattac aatgtgaatt
     4981 taactattag tgaggggcgt tatcatcaag ttaagcgaat gtttgccgcc cttgggaata
     5041 aagtcgaggc attgcaccgc tggcgaattg gcgatgtggt gttagatgaa aggttggaag
     5101 aaggtgaatt ccgctcgctc acttcagagg agatagccag ttttaatgga aagtagaaga
     5161 ccaagcctga gctttttcat catattaggt atgatggcaa tgttgccacc attagccatt
     5221 gatatgtatt tgccctcatt tttagacatt gcccgtgact tggcggtttc gcaagaaaaa
     5281 gtgcaaacca ccttggcggt atttacccta ggttttgggg cagggcaact attctgggga
     5341 ccgatggcag acagctttgg gcggaaaatc attattttaa tcggattagt cggctcggcg
     5401 attgccgctt attttctgac ccaagttcag aatattgaaa cattttacct gctaaggtta
     5461 gtacagggct tatgtgcggc agccccggcg gtggtgctgg gagcattagt gagagatctg
     5521 tttgagcgta atttatttgc caaattgatg tcggttatta tgattatttc tatgcttgcc
     5581 ccattgcttg caccgattgt tggcggttat attgccaaat atttccactg gcactcaatt
     5641 ttctatgtgt tagtggcgat ggggattttg tgcgtggtat taattagttg gaaaatccct
     5701 gaaacattag cccccgaaaa acgcctgccg ttaagttttg gcaaaacttt aagcaatttt
     5761 gccatcttac tgaaacatag gcctactctt ggttatgtgc tgattggcgg cttaaccttt
     5821 gcaggtattt tctgtttttt aacctcaggc tcgattgtct atattgggct ttatggcgtg
     5881 tcgcaagaaa atttcggcta tttcttcggg ctgaatatga ttgtgatggt gacgatgacg
     5941 gcgattaaca gcaaaatggt agtgaaagtc ggctctgaaa cgatgttacg aattgcttta
     6001 gctatgcaac tgttagccgg catttggctg gctttagtgg cgatttttga tttaggcttc
     6061 tgggcaatgg caatcggtat tccgctttat atcggaatgc tttccaccat tggtagtaat
     6121 gccagtgccg ccattttaga gcaatttcca caaatggcag gcacggctaa cggagtagca
     6181 ggtacggctc gttttggtgt tgcttccctt gttggagcag ggctttcaca tattgctgta
     6241 accagtgctg ccccaatgct tttggcgatg gcattgtgcg ttatgttagc cggtgtggtg
     6301 tattattttc tgtgttataa gcgataacta ggttggggtt agcttgcgaa aacccaacaa
     6361 atttctacaa gcggttaata atagtacatt ttttgcaaat ttttaggcag aattaaccgc
     6421 ttgtgtggta cgagcgtgga cgctcgcacc atcggggcaa tatctactaa gattttaaaa
     6481 acagcgaaat agattccaaa tgcccggtgt gggggaacat atcaatcatt gccgcttttt
     6541 ctagcctgta gcctagttgc aacagttttt cggcatctcg caccagtgtt gccggattgc
     6601 aagagacata aacaatccgc tcaggattga gtgatgtcaa gtgatctagg caaaatagtg
     6661 ctccgttgcg tgccgggtcg agtagtacct tgttaaacgg ctcttttgcc caaggtttgt
     6721 cagaaaacgg ctcatctaaa ttggtttggt aaaattccac attttttaga ccgcttgtca
     6781 ccgcattctc tcgggcttgt tgcaccattg gttctacccc ttccacaccg accaccgatt
     6841 tcgctcgctc agcaataggc aaggtaaaat tccccattcc acagaagaga tctaacactc
     6901 gatcttggtt ggataattcc agccactcaa gggctttttc caccattttt tcattgagcg
     6961 tggcattcac ctgaataaaa tcccgaattg aaaaatgcaa ctttagaccc tgaatttgat
     7021 aatacgggcg ttcaccgcac agatgctcaa tgtgattttc gctagtcatc acaaaaagag
     7081 ataattgctc ttgtgtggcg aattgacgca aattgtggtt atcttgcgcc gataatgccc
     7141 ctaaatggcg gaaaaatagg gcaatggtat tgtccgcact gaccagctca atatgcccca
     7201 attttttcgg ctgttgccag ttttcaatca ggtgttttaa ttttgggagc aaattggcaa
     7261 gcggttcaac cagcacttca cagtgtgcaa gcggtataat ttggttggaa ttttgcaaac
     7321 gaaagccgat taccgccttg ccttgctgga tcgcaatgct taattttgcc cgacggcggt
     7381 agtgtttatc gttgccgata atcatcggct gaacatcaat agcgtgggtt tgcaatttct
     7441 gtaagcgttg gaataaagcc tgttgttttg ccttacgttg cagttcaagc gaaatatgct
     7501 gcatttggca gccaccgcat tgcccgtaaa gttcgcagct tggcattcgc cgatttgcag
     7561 attttttaag aattttaacc gcttgtccac gtccgtattg gcgtttctct tccaacactt
     7621 taaattccac ctgctcatca ggcagggcat tttcgataaa ccaagttttg ccgttgattt
     7681 tggcaatccc taagccttga taatctaacg attgaatagt tgccttttga caagcgggtg
     7741 attttatcgg tttttttgcc gatttttcag aataaaaaat agccattgtt ttcagatgaa
     7801 ttgttatgat ataaagtgtc gaaatgggga gattatataa gaaaagcagt tggcggaaaa
     7861 tggaggcaat atgatttcat cggtttggaa tgaacgttat ttggcggata aaaaacggga
     7921 acaagatcac cgctcgcctt ttcagcggga tcgggcaagg ttattgcatt cggaggcttt
     7981 tcgctgtttg caggcgaaaa cgcaaattca cgccgtgggg gaagatgatt tttatcgaac
     8041 ccgtttaacc cattcgttgg aagtggctca aatcggtagc agtttgcgag aaaaattatt
     8101 agcggatgtg gaaggctttc aagcggtctg ttcggagcag gaatttgcaa aaaatatggc
     8161 aaatctgacc gctttattgc cggatcatag cttggtggaa tccctttgtt ttgcccacga
     8221 tctcgggcac cctccgttcg ggcacggtgg tgaaatggcg ttaaattata aaatgtacgc
     8281 ctttggcggc ttcgagggta atgctcaatc ctttcggatt atgacccagc ttgagcctta
     8341 caccgaaaca gccggaatga atctgacccg tcgcacctta ctgggggtaa tgaaatatcc
     8401 ggcactcttg tctcaaacct cgccgattga gccggcagaa atgagcgagg ctcggcatat
     8461 taatttgcac cattttccac agagcaaagg gatttttgat gacaacaacc acttttttga
     8521 gtgggtatta gccccgttaa gtgaaaaaga ccgacgccaa ttttgcacgg ttcagcccaa
     8581 tcaagatccg aaacagccaa acaaaacgca atataaatct ctcgattgca gcataatgga
     8641 actagcggac gatattgcct atggcgtaca cgatttggaa gatgcgattg taggtggaat
     8701 ggtcacaccg caatcgtggc aaaatgcgga aaaattgctg gcggagtgcc aatccgattg
     8761 ggtgaaacaa cgcctgccgg agattcggga aaagctcttt tctcagcacc gctacgagcg
     8821 aaaagatgtg atcggggcat tagtgaatca ttttattacc aatgtgcgtt ggaaagctct
     8881 gcctgaattt gacgagccgt tgctacgtta taatgcctat ttaccggaaa gtgttgcctg
     8941 tgtgctgaaa atcttgaaag attttgtgta tcaatatgtg atttgtgatg ccaaaaccca
     9001 gcgggtggaa cgcaaggggc aacgcattct aatggaattg ttcgatattt taagcagtga
     9061 tccgatgcga ttactcccta ataatgtgcg ggaacgttgg aaaaatgcgg aagaatctaa
     9121 gcgtgcaagg gtaatttgcg actatttagc cggtatgtct gatgggcagg cgtttaaact
     9181 ttttgaaagt ttataatgaa ctttgttaat tttgcaaggt ctcagtaata ggtttcattt
     9241 atttaatagg agatttcaat gaaaactgtt tctaaaggtc ttttagtatt agcaactttg
     9301 gcttctgcaa cagcatttgc ggtttcttcc aagtgaaatt tatcagcctc gtggcgaatt
     9361 agttaaagca gatcgtcaag gtaatggtga gtttgaagta gaatatcgtg tcagtggtaa
     9421 tgatgttcgt ggcttagcga aaagtgcgat cgcccacgct aaacgtaaag gtttccattt
     9481 agtagaatct gatattcata gagatgatgc tgatttaaaa ttcaaacgtg gtgaccaaga
     9541 gctggatatt gaaattgaag taaaaggtag aaatcggatt gaatataagg cagatctaga
     9601 tttagataaa aactaaattt accccttaaa acgaccgctt gtgtgattta accgcacaag
     9661 cggtcttttt attgtgcttt tttgcaaaaa tactcaagcc gaccggtccc ggaatttggt
     9721 aaaatagccg tttaaatgac aataatgatg cttttactta ttacttagag gaaaaaatgt
     9781 ttttagtcgg tcagcgttgg ctaagtgaat cggaaaataa tttaggtttg ggaatcgtga
     9841 cttcggtgga tcatcgcact gtcactatca atttcccggc agcggaagaa gagcgggtct
     9901 atgcaattgc agttgcacct ttaactcgag tgcagtttca agccggagat agaattaaca
     9961 gtatagatgg ctggcagtta gaggtttcag aggttgtgga aaatcaaggt gccgtaatct
    10021 atttgggcaa aagggtggat aacggtgaag aagcggtact gcctgaaatg ttgctcgatc
    10081 ataaaatcag tttcagcaaa ccgcaagacc gccttttttc ggctcagatt gatcgctcag
    10141 atcgctttgc attacgcttt aacgctttgc agcaccagca agcgcaatat cagtcgccac
    10201 tgcgtggttt gcgaggcatt cgagccagcc tgattccaca tcaattacat attgcaaaag
    10261 aagtcgggca acgccttgct cctcgtgtgc tattagccga tgaagtggga ctgggtaaaa
    10321 ctattgaagc tggtatgatt ttgcaacaac agctattttc gggcagagca gaacgagtat
    10381 tggtattagt gccggaaagt ttgcaacacc aatggttggt ggaaatgctt cgccgtttta
    10441 atctgaaatt ctcgttattc gatgaagaac gttgtagtga ttttgataaa caagatgaaa
    10501 atggcgatga tgtaagtgaa aatccatttg agagcgaagc gttagtcatt acttcactaa
    10561 actggctgga aacctcaccg caacgagcca atcaagtgct tgctgccgac tgggatctat
    10621 taattgttga tgaagctcac catttagaat ggtcggaaac cgaatcttct atcggctatc
    10681 agttggtaga gcgtttatct caacaaattc ctgccgtctt gcttttaacg gcaacaccgg
    10741 agcaattagg gcaagagagc cattttgccc gcttggcgtt gttagattcg gatcgttttt
    10801 atgattatgc cgagtttgta caggagcaag cacagtataa accggtggca gatgcggtga
    10861 gtagcttatt aagcgataaa ccgctaagta atgacgagca gaatgcgatt gcggagctgt
    10921 taagcgagca agataccgag ccgatgttcc gtgcaattaa tagcaaaaaa tcggacgaaa
    10981 atgaccgctt gcaagcccgt caagagctga ttagtgagct aattgaccgc catggaacca
    11041 gccgggtgtt gtttagaaat acccgtcagg gagtgaaagg cttcccacat cgggaatacc
    11101 accaaatcag cctagaaatg ccgaaacaat accaaaatgc gttaaaagtg atgggaatga
    11161 tggggagtgt gagccaaagt gatttgctct atcctgaata tttgttccaa cgaatgaacc
    11221 cgaatgcgaa atgggctgaa ttcgaccctc ggattgattg gctcatcact ttcttaaaaa
    11281 atcatcgtga tgaaaaagtg ctggtgatct gcaaacaggc ggacactgcg attgctttgg
    11341 agcaagtttt gcgtgagcgt gaggcgattc gttctgccgt tttccacgag aaaatgtcga
    11401 ttgttgaacg tgacaaagct gccgcctatt ttgctcaaca agaagaaggc gctcaggtgc
    11461 tgattagttc aagcatcggt tcagaagggc gaaatttcca atttgctaaa gatttagtgc
    11521 tgtttaattt gccggataac ccggatttat tggagcaaag tattgggcga ttagatcgta
    11581 tcggacagaa aaatgacatt cagatttatg tgccttgctt taatttatcg gctcaacaga
    11641 tgttggcaga gtggtatcac aagggcttga atgcgtttga agaaacctgc ccgatgggaa
    11701 cagcgatctt ccgtgaatta ggtgaagaat tgcaacaatt cctgcaaaaa cctgaacttt
    11761 cagcccaatt tgatgatttt gttgcgaaaa cctataaacg ccaacagtat ttgaaagccg
    11821 aactggagaa aggacaggac agattattag aactgaattc taatggcgga gaagcagctc
    11881 aacagctcgc taatgatatt gcgaaagaag ataataatcc gcagttggtt aattttgcct
    11941 tgagtttgtt tgatgtgatt ggcgttgaac aggaagattt aggcgagcag agcattgtga
    12001 ttagcccaac cggacatatg cttgtgcctg atttcccggg gctatcggaa gatggcacga
    12061 ccattacctt taatcgtgaa ctggcgttaa tgcgggaaga ggtggaattt ctcacttggg
    12121 atcacccgat gatccgcaat ggtattgatt taatcacctc cggcgatatt ggcaaatcag
    12181 caatctcatt gctggtgaat aataaattgc ctgccggtac attattactt gaggcgcttt
    12241 atgtggtgga agcacaagca ccgaaagggc taaatttaac ccgtttccta ccgccaaccc
    12301 cgattcgggt tttagtggat aacaaaggca acaatattgc tccgcaggtc tcttttgccg
    12361 ggcttgaacg ccaattaaaa ccggtgaata aacagatggc aaataaaatt gccaaaatgg
    12421 ctcgagcgga tattgaaaaa ttaattaaag cgagtgaaaa agcggtagaa cctcaggtcc
    12481 aacaggtgat tgaaactgcc aaatttgagg caaatagcaa attaaaagca gaattacacc
    12541 gcttggaatc actcaaaatg gtgaataaaa atattcgagc cgatgaagtt gaagccttag
    12601 aacaacagct taacgcttcc cttgcccaac ttgaaacggc aaattatcgc ttagatagct
    12661 tgcgagtgat tgtaagtaat aaagcgtaat tttttgcaag tacgaaaagt gattttttcg
    12721 atctgtgtcg aaaaaatcac ttttctattt tgtgtcatcc ttgcagatta tttatgctat
    12781 tcctcatatt gtaaaaggta taaaaaagga atattatgta tatagatttg caatatgctg
    12841 tgccgttatt gtttgaatac gacccgaaca aaagccaaat taatttagcc aaatatggta
    12901 ttgattttga acaggcaaag ttgctttggg aagatgaacg aaaagttgta ctggaggctt
    12961 gcattgaacc cgaattacgc tatttcctga ttggcaagat ttatgataaa tattggacag
    13021 cgttttttac accaagaaat gatgttattc gtttaatttc agttagacgt tcccgtaaaa
    13081 aagagatctc atactatgag aaataccatt agtgccgaag aattagaacg tatcttcgat
    13141 gaaggcaaag aagatatttt acaatactgc gatctttcta ccgctcatcg cccggggcaa
    13201 atgaaaaggg tgaatgttga tttcccaaat tggatggtag aagcgttaga taagcaagcc
    13261 agacatttag gtgtgcctcg ccaagccttg attaaaatgt ggattgcgga aaaattaccg
    13321 gttcaatcac ctaggtaagc gagtggcaaa tggcattaat tgaatataac cctccattag
    13381 aaccattttt agatgaggtt tatcgggata accatatttt agtaattaat aagcctagtg
    13441 gtttattatc ggtgccgggc aatcgtcccg aatattacga cagtgcaatg actcgagtac
    13501 agcaaaaata tggctttacc gaaccggctc atcgtttgga tatggcaaca agcggtattc
    13561 ttttgttcgc cctaagcaaa gcggcggaaa aagaactaaa acgccaattt cgggaacgtg
    13621 aaccgaaaaa acactatatt gcgttacttt ggggcaaatt aggtgaaaaa gttggggata
    13681 agggcgaaat gaattttccg ctgatttgcg attgggaaaa tcgcccccgc cagaaaattt
    13741 gctatgaacg aggcaaaaaa gccattaccc attatgaagt gttagctcat tatccgaata
    13801 atatagcgag agtaaaactc acgcctatca cggggcgttc gcatcagcta cgagtacata
    13861 gccttgcgtt aggtcacccg attattggcg ataagtttta tgctaatccg ctggcaaaaa
    13921 gtttatcgcc ccgtttatgt ttgcacgcgg agtcactaac aattactcac ccgattacaa
    13981 gggagttgat gacgtttact gctgagccga ctttttagcc tcgttcagta ggtgtttgta
    14041 atatgcccaa tcaaaatatt gccccgggtc gattttccgt tccggggcaa tatggcaatg
    14101 cccggtgatg cgttcatcgg taatttgtgg atagctttgc tgaatggctt tggtcaaatt
    14161 tgccaaagat tggtattgag cttgagtaaa cggctgatta ttactgcctt ccagttcaat
    14221 gccaatcgaa tattcattgc atttctcccg cccttcaaaa caagagacgc cggcgtgcca
    14281 cgccatatcg ttaaaattca catattgcgt gatttccccc tccctattaa tcaaacaatg
    14341 ggcggaaacc cgtagatctt tgatttcttc aaaataaggg tgagcggttg gttcgagttt
    14401 accttggaaa aacagatcga taaaatttcc accaaattct tccggcggta agctgatgta
    14461 gtgaataacc aacaaggaaa tatcctcttg atcaggacgt tggctaaaat gcggagacgg
    14521 cacttgtttt tgaccggtta aacagccctg ttcgattttt aaatttggca tagtctaaat
    14581 agggtgaata cgttaaaata tggctcattt tactagaaaa agagaagaat atgttaagtt
    14641 atcgccacag tttccacgca ggcaaccacg ctgatgtgct aaaacacatt gtccagcttt
    14701 tgatcttgcg agcattaaaa gaaaaagaaa aaggtttttt atatcttgat actcactccg
    14761 gtgtggggcg ttatagtctg ttaagttttg aatcggaaaa aacaggcgaa tatttagagg
    14821 gcgttgcccg tttatgggag cgtgatgatt taccggaaga agtggcattc tatattgatg
    14881 agctgaaaaa attaaaccgt ggcggcaagt taaagtatta cgcaggctcc ccattattgg
    14941 cggtacagca actgcgtgag caagaccgag ccattcttac cgaacttcac cccaatgatt
    15001 ttccgctgtt acgacaagaa tttgccaaag cgaaaaatgt gcaaaccaag cgagaaaatg
    15061 gctttcaaca attaaaatcc gccctgccgc ctaaagagcg tcgaggtttt gtgttgattg
    15121 atccacctta tgaattaaaa gaagattatg aattggtggt taaagcgata gaagagggct
    15181 acaaacggtt tgccactggt gtgtatgcca tttggtatcc ggtggtgctt cgccaacata
    15241 ccaaacgtat agtgcgaggt ttaatggata ccggcattcg caaaattcta caaattgagc
    15301 ttgccgttcg tcctgatagc gaccaacgtg gaatgacggc aagtggtatg attgtgatca
    15361 acccaccgtg gcagcttgaa acccagatga aaaaaatcct gccatattta accgaggtgc
    15421 ttgtgccgga aggaacaggt tcttggaagg tggagtggat tacgcctgag taaattaaat
    15481 acggatagca caagcgtgga cgcttgcgcc atcataaatt ctgatttgca atatttttta
    15541 gaaaaataac cgcttgtctt atcaagaagt gggggaaata taaaaggaaa aaacgatgca
    15601 acaatacaaa cacgacttta ttgaatttgc cttaagccgc aatgtgctga aatttggcga
    15661 atttacctta aaatcaggca gaatcagccc ctattttttc aatgctgggc tttttaacac
    15721 cgggcgcgat ttagccaaat taggcgaata ttacgccaaa gccattcaag ccagcggcat
    15781 tgagtatgat gtgttattcg ggccggctta taaaggcatt ccgattgcaa ccacggttgc
    15841 cgtggcacta gccaacctgt tcgatgtgga taaaccttgt tgctttaacc gcaaagaggc
    15901 aaaagatcac ggtgaaggcg gtaatttaat cggttctccc ttaacgggca agattttgct
    15961 ggtggacgat gtgattaccg caggcacggc aattcgtgag tcgatggaaa ttatcaatgc
    16021 caataatgcc cagcttgccg gtgtgctgat tgcgttaaac cgtaaagaga aaggcaaggg
    16081 cgagttgtct gcgattcaag aagtcgaacg tgattacggt tgccaagttt tctcgattgt
    16141 ggattttgat gatttggtag catttattga aacgtcgcca caatacgctc cttatttgcc
    16201 gaaaatgcgt gaatatcgtg aaaaatacgg tgtttaactt ttgcaaaaaa acagcaaaaa
    16261 ctcaccgctt gtcactctct aatctcacca ttatgaatca ctttcatctt ttggtgagat
    16321 tttttcaatt aaaaagccga taaattgatt gtgagcttta gctaattggc ttaggataaa
    16381 ctcctgtaat acaggagttg gagaactaaa atggcacatc aaaaattacc ttttcacgca
    16441 gacaccgttg gctcatattt gcgttccgat gcttggaaaa aagctcacgc agactataaa
    16501 gcaggcaaca tttccctcga acaacgtgat gaaattgtag aagcggaagt gaaaaaatta
    16561 gtacaagcat caattagatg cgggcattca agttgttaca gacggcgaat atcaccgctc
    16621 ttggtggcat attgatttct tggaaaatct gaacggcatt gaaggctatg tgccggaaaa
    16681 agcctatgcg tttaaagggg ttgaggttcg cccttataat acacgttgtt gcggtaaagt
    16741 gtcttggaat ccgaatcacc cttttattga gcatttcaaa aaattcaatg cgattgtagg
    16801 tggtcgtgcg gtggcgaaat ttaccattcc aagtccaaac caattaatgt acccgattca
    16861 gtgggatcac ggcatttacc caaaccgtga ggaatttgcc aaagatgtgc aacaggctta
    16921 taaagaggcg attaaagcgt tctatgatgc cggctgtcgt tatttgcaaa ttgatgatgt
    16981 ctattggggg tcgttgtgta ataacgttgg tcaaccgaca tttgaagccg ataaagctca
    17041 agcggtggcg aatattcaag ccattcttgc cgataagccg gaagatttaa ccattaccac
    17101 ccacgtttgc cgaggcaact ataaatcttc ttatttattg acaggggctt atgatccgat
    17161 tgccgacggc ttatttgctc aaaccaacta tgatgggtat ttcttagaat atgatgacga
    17221 gcgttcaggc ggttttgagc cgttaaaaca ttttgccaac aacaaagggc gtgtggtatt
    17281 gggcttaatt agttcaaaat tccctgaatt ggaagataag gaagcggtta aagcccgtat
    17341 tcaagaagcg gcaaaatatg tgccgttaga gcagctttgc ctaagcccgc aatgtggttt
    17401 tgcctcaacc gaagagggca atattatgtc ggaagcacag caatgggcga aagttcgtct
    17461 tgtggaggaa atcgcccaag aagtttgggg cgaagattaa ttagagtgaa aaatgcccgt
    17521 aacaagcggg cattttttgt gaattttttg caaattcaag ccatttagcg aatgcggtta
    17581 aaaccttgtt ctaaatcggc aatcaaatct tccaccgctt ccaagccaac gtgaatgcga
    17641 attaatgttc ccgtcagttt gcgttcaatc gccgggcgga ttttggcaat ttcttccggc
    17701 tgattggcaa gaatcagcga ttcaaaccca ccccaagaat acgccattga aaacagttca
    17761 aaatgctcta ggaagttggc taatttgtca ttcgagagct tttcgcaaag ttcaaatgaa
    17821 aatagaccgc ttgaacctaa aaaatcccgc ttaaaaaatt cgtgccccgg gcagctttcc
    17881 aacgccgggt gataaactgc tttcacttca gggcgttgag ccagccagtt agctaccgca
    17941 atgctacttt gttcgtgctg ttttaagcga atgcctaagg tgcgtagccc ccgagcggtg
    18001 atgtaagcgg aatcagcatc caccatttgc cccattaaat aagagccttc acgcagttta
    18061 tcccaacaac gggcgttaga aaccgcagta ccgatcatca catcagaatg cccgactaaa
    18121 tatttagtgc cggcttgaat ggaaatatca atgccatatt ctaaagcagg gaacagcaca
    18181 ccggcagacc aagtgttgtc gatcataatc acgatttctg ggttgatttc acgagcaaca
    18241 cgcacgagag tcggaatatc aggcacttcc attgttagcg agctcggcga ttctaaaaaa
    18301 agcactttgg tgttcggttg cacaagggct ttcaagcctt caccaatcat cgggtcataa
    18361 taagtagttg aaacacccat acgttttaac agcgcattac agaattcttg tgtcggttcg
    18421 taagctgcgc ctgtcattaa aacgtggttg ccttgttcca caaaagctaa aatcgcattg
    18481 gtgactgccg ccgcaccgca agggtaaagg tagcaacctg ctccaccttc taattcacac
    18541 atcgcttctt gtaatgaaaa atgagtgaga gtgccacgtc tgccataaaa taatgctcct
    18601 ttgtagcggt tttgtgtagc gtgttttttc tcttctaagg tttcaaacac taaagatgaa
    18661 gcacgctgaa tcaccgggtt aactgctcct tgtgtgttac gttttttacg ccctgtatga
    18721 acaagtttgg tggaaagatt tttatagtta gacataactt ttcctaaagt aaaatgcata
    18781 ggggcaaatc aacatttgcc cctttattaa taattaacga aacataaagt tatttctttg
    18841 acggctacgt ttaaattggc tgattagcac aatgaccgca acaattaagt aaaccgcaaa
    18901 agtaaagatt agccattgtg ccattgaaaa gccgaacatt tcccattggc tttggctaca
    18961 attaaccgga ccgggggcaa acacttgtgg tagccattgg tcaagcggca aggtttgcgg
    19021 gaaattaact ttaaattcgc attgattcca tggtgatgga ttgacctgat aatcgtggtg
    19081 tttgattgaa agtactagcc ctttaaatgc gctaccaagc caaattagaa ttgccaagta
    19141 gcgaataatc gcatatctat taccaagaaa tcctaaaata ccggcaaata aaataccaaa
    19201 taaagcaact cgctcataaa tacacattac acaaggtact aatcccatcc catgttggaa
    19261 ataaagcgct gtgccttcaa gtataagaca gcttaacatt agtaaaaacc atgcactgcg
    19321 agattgtgat agatttttaa aaaaatagag catagttatt cctcattttg tgaacttaag
    19381 gcattctacc ttatttggta tgagttatct ataaactaac gtgtaataaa ccatccccaa
    19441 tttatcatta cttcagtcat agaaggtagt aagaattcta accctaagaa accgacaata
    19501 gatagaacaa tggtataagg taatgccata tagaccattc tgccgtaaga cagtttaatt
    19561 aacggcgcaa aggaggacgt taataagaat aagaaagcag cttgtccgtt tggggtagca
    19621 acagaaggaa gatttgtgcc agtattaatt gcaactgcaa tcaggtcgaa ctgctcacga
    19681 tctataatgc cggcatctag tgcggtttta gcttcattaa tgtaaacagt accgacgaag
    19741 acgttatctg aaatcatcga gagcaaacca ttgaaaatat agaataatga aagctgtgaa
    19801 tgtggttcgg cagataacac aaaggcaatg atcggctcaa ataattttaa atcaataatc
    19861 acggcaacaa ccgagaaaaa cacaataagc aatgcagtaa aaggcataga ttcttggaat
    19921 gctttcccta aagtgtgttc atcagtaatg ccacaaaatg cagtgcaaat aatgatgatg
    19981 gttaagccaa taatccctac atcggcaaga tgtagcgcta agccaataat taaccaaatt
    20041 ccagcaatgg cttgcaccag catctttaag cgatcttgtt tcgtcatttt ttgttctttt
    20101 agttggctat agcgagcgag tacgacccaa actttgctag gaagccggtc tccataacca
    20161 aataatttat atttttctac aagaaagcag gtcgcaatcc cacaaattaa cacgggtaag
    20221 ctaactggta atgctctaag taagaattcg ataaatcccc attccgcttg ggaggcaata
    20281 attaagtttt gtggttctcc caccatggtc attacgccac ctaaagctga gccaataccg
    20341 gcgtgcatca ataaacttct taaaaaacca cgaaattgct ctaaaatttc tttattagag
    20401 atgatttttt catcattggt aatatcagta gaatcttcaa agttattacc tgatgcgact
    20461 ttatgatata cgccgtagaa acctgttcca acgctaatga ttacagcaat aaccgttaaa
    20521 gcatcaagaa aggcggataa aaaagcagcg cttaagcaga aagaaaggga aagaattttt
    20581 ttcgaatgaa tggcgacaag cagtttggtg aaaatataaa gcaataattg cttcataaag
    20641 taaataccgg caaccataaa cattaaaaga agaataacat caaagtttgc cataatttct
    20701 tctttaatgt ggtgaggatt tgtcataccg attacaactg cttcaatcgc taataaacca
    20761 cctggctgta atggataaca ttttaatgcc atagagagag taaaaataaa ttcagcgact
    20821 agaaaccagc ctgcaacaaa aggattgata aagaaataaa tgagaggatt gataattaaa
    20881 aatgccaaaa tgcacaattt ataccactcg gggctttttc ctaagaaact tttgaacaga
    20941 gcatcaatgc tactcatata aaggacctca aaatttgtaa acagatatta caattgtaat
    21001 atagtttaga ttaaaggata atagtattac tgaacttttt agtcgcaata attgattaga
    21061 aataaagaat agttagattt tagataagca tattttttgc ttggggggca ttaatgggtc
    21121 acagtgatat tttaaaagcg caaagcccgg cagcgttagc ggaagaatat attgtaaaga
    21181 gtatttggaa taatcatttc cctgccggct ctgatcttcc tgccgagcga gagttagcag
    21241 agcgcattgg ggtaacaaga acaactttac gtgaagtact acaacgtcta gcgcgagaag
    21301 gttggttaag tattcagcac ggcaagccaa caagagtgaa tgatatttgg gaaacttcgg
    21361 ggcctaatat tattggcact attattaagc tagataaaag ctatcttcca gtggtgattg
    21421 ccaatgtggt gtcattacgt actcgtatgg cggaggctta tattccagaa gcgatttacc
    21481 ttgctcctga agaaagtgct aaactctttg atggactaga tgaattagaa aatacagcag
    21541 ctgcttatgc tgaatttgat tataagttat tcagacaatt tactttttta gccaataagc
    21601 ctgtgtatgc gttgatccta aatagcttta aatcaatgta tcatcaagtc gcaaaaattt
    21661 tctttgctga tgaaaataat cgtcaattaa cgttaagctt ttaccgttca ttattatgta
    21721 cttgtcttgc aaaagatagt gaaaaagcag ccgcttgtat ggctaaaaat cgccaatcta
    21781 gtggtgaaat ttggcaaaaa ttatccgcta atattcctga aagctttggt cagctttaac
    21841 agaaggtaga attttgaacg aaattatttt tagcttagaa ccgcaagata atgctcgtct
    21901 gcaatcgctt tgtggtgcat ttgatgagca tttagcctta attgaaaaaa gttttaatct
    21961 cattattgct cgaacaggct tcaactttac gattcaatcg gaagatgaca atcactattc
    22021 tgctaccttg gttcaaaata gtgtgaagct gattaagcaa ctgtataatg aaactgcccc
    22081 gattaaaggc aaaattaagg aattggactt agaagatata catttggcga ttcaggaaag
    22141 ccgaatgcta ctacaaaacc aatggcaagc cggctcgcaa ggcgaaatag cgattaaaac
    22201 caagcgaggg gtgattaaac ctcgtagcga acatcaacaa gcctatttac gaaatatatt
    22261 aagccacgac atcagttttg gtatcgggcc tgctggcaca ggcaaaacct ttttagcggt
    22321 agcggcagcg gtggaatcgc ttgaacgcca agaaatccgc cgtattttac ttacccgtcc
    22381 ggcggtggaa gccggtgaaa agctcggttt tttacccggc gatttagggc aaaaaattga
    22441 gccttactta cgcccgttat atgatgccct gtttgaaatg cttggctttg aaaaagctca
    22501 aaagttgatg gaacgtggtg tgattgaaat tgccccactt gcttatatgc gagggcgtac
    22561 tttaaacgat gcgttcatca ttttagatga aagccaaaac acgactaccg agcaaatgaa
    22621 aatgttctta acccgtattg gctttaattc caaagcggtg attaccggcg atattaccca
    22681 agtggatttg ccccgtagcc aaaaatcagg cttaaaacac gcaatggaag tgctaaaaga
    22741 agtgccggaa ctcagcttta atttctttga cagcaaagat attgtccgcc accctgtggt
    22801 tgccaaaatt gtgcaagcct atgatgcgtg ggaagcggtt gatgaagagc gtaaagaaca
    22861 gcgaaaactg gaaaaattag ctttagagca agaaaaaatt cttgctcaag ctgaaatgtt
    22921 atagcttaca agcggtcata tttcgctaat tttttgcaaa aaatcgctga aatttcaccg
    22981 cttatcataa cagttgttca acaaaaaagc gggaagttaa ttcccgcttt tctttatctt
    23041 attgtttcat tataagattt cttttgcttt agcaaccacg ttttcaacgg taaagccgaa
    23101 gagtttgaat aattgatctg ctggtgcgga ttcaccaaag ctattcatac ctacaattcg
    23161 accatcaaag ccgacatatt tataccagaa gtcagctaat tgagcttcaa tcgccacacg
    23221 tttagtgact gaacgtggta ataccgattc acgataggct tcatcttgtt tgtcaaacac
    23281 gttggtgctt ggcattgaaa ctacacgcac tttcacgcct tctgcatcta acacatcagc
    23341 ggctttcatt gctaaatcta cttcagaacc ggttgcaatt aagattaaat ccgggcaact
    23401 gcctttttcg caacattcac gcaagatata gccaccacga gagatgttcg ctaattgctc
    23461 cgcagtacgt tgttgttgag ccagattttg gcgggtaaag attagtgctg tcgggccgtc
    23521 tttacgttct accgccgctt tccaagcaac agcagattct acttggtctg ccggacgcca
    23581 ggtttctaag tttggaattt ggcgtaatga agcagtttgt tctaccggtt ggtgggtcgg
    23641 gccgtcttca cctaaaccga tggagtcgtg tgtataaaca aataaggcac gttgcttcat
    23701 taaggctgcc atacgcaccg cattgtgtgc atattcgtag aacattaaga aggttgcacc
    23761 gtaaggaatg aaaccaccgt gtagggcaat cccgttcata atcgcagaca taccgaattc
    23821 acgcacgccg tagttgatgt agttaccatc tacattgtgt tccgcacgaa tcggttttga
    23881 gccagaccat aaggttaagt tagagcttgc taagtcagct gagccgccga ggaattcagg
    23941 taagattggc gcgtaagctt cgattgcatt ttgtgatgct ttacggcttg caatggttgc
    24001 cggatttgct tgtaattttt caataaaagc tttgctttca gcttcccagt tagccggtaa
    24061 ttcgcctgcg taacggcgtt taaattcagc ggctagttca gggtatgccg cttcataagc
    24121 agcaaattta gcgttccaat ctttttctgc taatgtacct tttgcttttg catcccactc
    24181 tgtataaatt tcagctggaa tcacaaatgg ggcatgttcc caacctaaaa attcacgagc
    24241 ggcttggatt tcagcatcac ccaatggcgc accgtggcaa tcgtgagagt ttgatttatt
    24301 tggtgaacca tagccgataa tggttttaca aataattaaa gttggacgct cggtttcggc
    24361 ttgtgcattt tcaatcgcaa atttgatttg ttctgggtta tggccatcga cattacggat
    24421 aacttgccag ccataagact caaagcgttg tgcggtatca tcagtgaacc aaccatcaac
    24481 gtggccgtcg atagagatat tgttatcatc gtagaaagca atcagtttgc ctaagcctaa
    24541 tgtaccggcg agagagcaag cttcgtgtga gataccttcc attaaacagc catcgcctaa
    24601 gaaagcgtaa gtgtagtgat cgacaatttt atgaccttca cggttaaatt gtgctgcaag
    24661 ggttttttcc gcaatcgcta taccgaccgc attggtaata ccttgaccta acgggcctgt
    24721 ggtggtttca acacccggtg cataaccata ttcagggtga ccaggtgttt tagaatgtaa
    24781 ctgacggaac tgttttaaat cttcaataga gagatcatag ccggttaaat gaagtaagct
    24841 atagattaac attgaaccgt gtccgttaga cagaacaaaa cggtcacgat ctgcccattt
    24901 aggattagtt ggattgtgtt ttaaaaaatc acgccataaa acttctgcaa tatcagccat
    24961 acccattggt gcgcctgggt ggcctgagtt agctttttgt acagcatcca tacttaaaaa
    25021 acgaattgca ttcgctagca ctttacgttc tgtcatttgt gttactccta atcgagaatg
    25081 ttatataaaa tggaaaggat atcgaattgg attctacact attttgctag aaaaactcaa
    25141 aaatggaaat gagaaatgtg atctgtatca caaaaaatga ttaaattgtg atttgttttg
    25201 attggatttg attttaatag acggtttttt cctaatacaa tattttcttg ataaagcgaa
    25261 tgtttagtag ttgatctagg caacaaattt atctaaaata cgcactcttt ttggcgttga
    25321 gcatttgctc aacattttta ttaattacat atggtaccta tcagcggtag agattctaac
    25381 aagataggcg gcgatatggc ttcttatgag gttccccaat gaaacaaggt attcacccag
    25441 aatataaaga aattacggca acttgctctt gcggtaatgt agttaaaact cgctcaacag
    25501 tgggtaaaga tttaaactta gacgtatgtg gcaactgcca cccgttctat actggtaaac
    25561 aacgtgttgt tgacaccggt ggtcgtgttg aacgctttaa caaacgtttc agcatcccaa
    25621 gctcaaaata atttgattat tgcaaacccc gctaatgcgg ggttttgttt ttcttatata
    25681 tcgaattaac aagcggtgta tttttctatc aattttgcaa attggtgatt taaccatttt
    25741 gcaggagcta ccagagaaaa acctcgagta tcattattat cctcggtcca tttatctgcg
    25801 atcaccataa aagtttcaac atctttctta ggttttggat accagcgtgc aatattagct
    25861 ggatgattgg cataaaatga gagcaatttc ttgcctaatg cacaagaaat atggacacca
    25921 cctccatcaa ctgcaattac aatatcagca gagtttacta atgcacaata acctaaaata
    25981 tcactattag gtgctaggct tatttcaaat ggggctttaa ttttcgacaa atattcggca
    26041 ctattggttg tattggtcag caaacaacta atatgttgaa catatctttt atcaatcata
    26101 gataatagct ctgataattc ttgagtagaa atttcacgca tactaccttg aggattcaat
    26161 agtaatcgaa ttttcttctc ttgccatagc gtatttgcaa aactgcttag ttcattagga
    26221 atgtttaaat tataattgac ctgatttttt tctaaaaaat cagcaaaaat agcatagttg
    26281 agatagtcag caaaatgaac ctgctttgga aagacagtgg tgaaatcgta attttttact
    26341 gtatctaaat tgtaaatact tttttgtttt ttaccgaagt taataataaa tttaggcttt
    26401 aaaatactat ctaaaataat actttttgtg gtaaatgtcg gtttgaaatc taaataaaga
    26461 tcccaatgtc cccgctgcga gagataagtg gatactttat cttctaagat catatctacc
    26521 acgtttgctt gagagaaaat caatttgtta cgagatgtaa ctaaaaccgc tatttttaca
    26581 tttgggagag cttttttaat ttgctccaaa tgagctatat gcacaacagc atcgccaata
    26641 gcatctccga taggtttgag taatacggat tctattttgc taaatttgaa ggtttttttc
    26701 tctttttttg taccaaaaag ttttataact aaggatttca tctctataat aggttgattc
    26761 ttttaatgat tggttatagt aagtaaaaat gaatattaaa gcaacgttaa gaaaagcaag
    26821 attggtgata ggtaaagcca ttttagatag taaaaatact gatctgatat tatcggaaat
    26881 tcccaataaa attctatttc ttcgtcacga tggtaaaatt ggtgattatg tcgttagttc
    26941 ctttgtcttc cgtgaaataa aaaaacagtc tccccaaacg caaataggcg tggtttgctc
    27001 acagaaaaac cgatatttat ttgagaataa tccttatatt gataagctct atttggttaa
    27061 gacaaaaagt attcctgatt atattcgtgg tggcaaacaa cttgcaaaag agcagtatga
    27121 tgttgtaatc gatccgactg ttactttacg gaatcgtgat ctcttatttt tacgcactat
    27181 atcagccaaa cattatgtag gttatcagaa acaaaaatat cgattatttg atctaaatgt
    27241 agaggataga aaacagcatt tttcagagat ttatcaagat gcgttagctt taatcgggtt
    27301 tgaaaatata gaaactcagt atgatgtgcc actaaatgcc acaagcaacc aatccataaa
    27361 gcattattta tatgaaaacc aaattagaaa ttatattgcg ttaaatcttt ttggtgcagg
    27421 ttcggcaaga cgttttagtg agcagaaaat taatgaactg ctgagttgct taaaacagca
    27481 tagtgataaa ccgatagtct tacttacttt tcctgaagta acggcaaaat tgtgttcctt
    27541 tactaagaag tataaaaata tatttgtcta tgagaaaacc aaaagcgttt ttgattcaat
    27601 agaactgatt cgttttgcgg acttattaat ttcacctgat actgcaaccg tgcatattgc
    27661 ctcaggcttg agtaaaaaga taattgcttt ttacagtagc gatgaacaga attttataca
    27721 ttggcatccg aataatcagg ctgaaaccca tattctccgt tttagaaaaa gcgtgaatga
    27781 tttagatttt gctgcaataa aaccggagtg gctaaaataa tatggacttc caaagcctta
    27841 aacttttcct agatatagcc caaagccgta gttttattcg cagtgcggag aagaattata
    27901 tgacggcttc cacacttacc cgccatattc agcgtataga ggaggagctc gggcagccgt
    27961 tgtttctgcg tgataatcga caagtgcgtt taactgaagc aggggaaagg tttttggcgt
    28021 ttgctcaaca aggttgggca gagtggcagc agttgcaaaa ccagttgtcg cctgctcaag
    28081 gtgatttaga aggagagttg aaagtgttct gctcggtaac ggcttcttac agccatttac
    28141 cgccgatttt gggaaagttt cgccaaaaat atccgaaagt ggatattaaa ctgagtaccg
    28201 gtgatccggc tttggcattg gaacaggttc agtcattggc tgcagatatt tcggttgcgg
    28261 gtaagccgga atttctgccg aataatattg tgtttcacta tattgatgat attcaacttt
    28321 cgattattgc ccctcgtgtg gcgagccaag ccactcaatt tctgcaacag tcgccgatag
    28381 attggaaaaa tatccccttt attttgccgg tgaacggacc tgtacgaaaa cggattgacc
    28441 gttggtttaa agagcaaaaa atcaaagacc cgattattta tgctaccgtc tccggacacg
    28501 aagcgattgt gccgatggtt gcactaggct ttggggtcgc actgctaccg gatattgtga
    28561 ttaagcatag cccaatgaat aatcaagttt cttatgtgaa tttaccctcg ccgatcactc
    28621 cgtttgagct gggaatttgc gttcagcaaa aacgcttgca agagccgatc atcaacgcat
    28681 tttggcaatt attgtctgat aattcagcat aacaagcggt tagattttgc taaatttttg
    28741 caaaaaatag agcaaaaccg accgcttgta gataaaactt tcagataaaa aataaggtgc
    28801 gtgattgtga tctgcgcacc ttatgttgtt ttagattatt gcactttatt gcactgtggc
    28861 tttagctcgc gattttttca ccttgatctc ggcttttgac aagatttcaa tccccattgg
    28921 cgggttttct agtgccagag ctagtacctc gtcaatggtt tctactgcgt gaatgtccaa
    28981 cgctgctttt gcattttccg gaatttcctc taagtctttt tcattttctt tcggaataat
    29041 caccgtcgta ataccaccac gatgggctgc cagtaatttc tcttttaagc cgccgattgg
    29101 caatactttg ccacgcaagc tgatttcacc ggtcatcgct acttctttac gcacagggtt
    29161 acctgttagg ctggaaatta atgcagtaca cattgcaatc cctgcactcg gaccatcttt
    29221 cggtgttgca ccgtccggca cgtgaacgtg aatatcccgt ttttcgtgga agtcttcagc
    29281 aatgcctaat ttttctgcac gagagcgtac aaccaccatt gccgcttgaa tagactcttt
    29341 cattacatcg cctaatgaac cggtgtaaga gaatttgcct ttacctgcaa cagaagcggt
    29401 ttcaatggtt aataaatcac cgccaacttc tgtccacgct aaaccggtca cttcgccaat
    29461 gcggttttgg ctatccattt tgccgtagtc aaaacgtttt acgcctaagt attcttcgat
    29521 atttttctca gaaactgtaa tggattttaa tttcttatcc aatactaaag ctttcacggc
    29581 tttacggcag attttcgcaa tttcacgctc aaggctacgc acgcctgctt cacgggtgta
    29641 gtagcggata atacttaaaa ttgcactgtc ttcaatggtc agctcaccct cttttagtcc
    29701 gttattttct tgctgtttag ccagtaaatg accacgagca atgtgcattt tctcatcttc
    29761 ggtatagcct gaaagacgaa tcacttccat acggtcgagc aatgctggcg gaatgttcat
    29821 tgagtttgag gttgccacaa acattacatc ggataaatcg taatccacct ctaaataatg
    29881 gtcgttaaag gctttatttt gctcaggatc taacacttca agcagagcag aagccgggtc
    29941 gccacgcata tcttgagcca ttttgtcgat ttcatctaac aagaacagcg gattacgcac
    30001 gccgactttc gccattttca tcattaggct acccggcatt gagccgatgt aagtacggcg
    30061 atgcccacgg atttccgctt catcacgcac gccacctaac gccatacgca catatttacg
    30121 ccctgtggca ttggcaatag attgccctaa tgaggtttta ccaacccccg gcggaccaac
    30181 taagcacaaa atcggacctt ttaatttatt tagacgactt tgcactgcta agtattctac
    30241 aatccgctct ttcactcgtt ctaagccgta gtggtcttta tccaaaatct cttgagcttg
    30301 ggctaaatct tttttgaccg ctgatttttt atgccacggc atttgtaaaa tccagtcaat
    30361 ataaccacgc acaacggtag cttcggaaga gctttgcggc attgctttga gctttttgaa
    30421 ctccgtattc agcttgtctt ttacctcggt cggtaatttt gcagcgtcaa ttttctcttt
    30481 aagcttatct aactcgcttt gttcaacgtc atcgccatta cctaactctt tttgaatcgc
    30541 tttaatttgc tcgttgaggt agtaatcacg ttggtttttt tccatttgct gtttaacacg
    30601 attacgaatc cgagtttcgg tttcaagcgt atccatctca gttgccatcg caattaacaa
    30661 ggcttcaaaa cgggcaatca gatttggttg ctccaataat tcctgttttt tcttcaccgg
    30721 agcaattaag ttagaggcaa tggtatccgc caagcggtct tccaacgtga ttttttgcag
    30781 tttagcaata atttccgccg gaattttctt gttattttta acgtaatttt caaattcggt
    30841 taaagtggtt ttagcaatcg cttttaactc ttcgttttcg tcatcatatt ccgaatatat
    30901 tggctgaatt gccgcccaga agccgttttc atcatcgtga atttgctcga ttttggcacg
    30961 ggtttgtcct tctaccagca ctttaactgt gccgtccggc aggtttaaca tttgaataat
    31021 gttggcaatt acacctacgc catacatatc ttctgcattc ggctcttctt tatttggatc
    31081 ttgctgagtg actaaaaaca gttgtttatt ggaatccatc gccgagcgta gggcttgaat
    31141 tgatttttca cgtcctacaa ataacggcat aaccatataa ggaaaaacca ccacatcacg
    31201 caatgggagt agtggtaatt caatcgcttt cttttttctt ggtgccataa atttgctctc
    31261 tctatcaaaa tataatcccc cattatgagg gcgaatttgg gaaaaacaag ggaaaatttg
    31321 atttatctta aaaaaactcg aatagtcaaa acagtagatg ttggcgattt aatcaattgt
    31381 taaaatcagg gtaattagct taatttcccg cttgacatca aatcgtaatg cgagcaaaat
    31441 cccctgcata ttttaatctt cagggcaggg tgaaattccc gatcggcggt aaagtccgcg
    31501 agccgagcaa tcggcaggat ttggtgaaat tccaaaaccg acagtatagt ctggatgaaa
    31561 gaagagtcaa aaaccgcaaa aaataccgca caagcggtca ttttttgtgt cttttttgca
    31621 agccttgagt cgtgagattt caaggcttca ttgttttgca ggcggcgttt gcaaattttt
    31681 tactaaaaac gaccgcttgt attgcaataa tcctttcatt acgccctcaa tttatcaaaa
    31741 tgtatatgac agatgttcaa tatatggctt atgccatcac ccttgccgaa aaagcacggg
    31801 gttggacaag ccctaatccg ctagttggct gtgtgatcgt gaaaaacggc aacattatcg
    31861 ccgaagggta tcaccaaaaa gccggtagtt ggcacgctga acgcaatgcg attttaaact
    31921 gcgaggaaga tctgacgggg gcaaccgctt atgtaacctt agagccttgt tgccaccacg
    31981 ggcgaacccc gccttgttcc gaactgctga ttgaacgtgg gatcaaaaaa gtgtttatcg
    32041 gctctcgaga tccgaaccca cttgtttctg gcaaaggagc ggcacagctt agagccgccg
    32101 gcattgaggt tgtggaagac tttatgcgaa cggagtgcga tgcgctgaac ccgattttct
    32161 tccattacat tcaaaccaaa cgcccttatg tgttgctgaa atatgggatg acggcagatg
    32221 gtaaaattgc gacttatacg gggaattcga aatggatcac cggcgaggct gcccgagcta
    32281 atgtacagaa aagccgccac gaatatagtg cgattatggt cggggtggaa acggtgcttg
    32341 ccgatgaccc aatgctcaac agccgaatgg aaaatgctaa acagccggtg cggattgtat
    32401 gtgacagcca actgcgtacc ccattggata gccaactagt ccaaactgca cgccaatatc
    32461 gcaccattat tgctacgctc aataatgatg caaaaaagca ggcagaatat accgcttgcg
    32521 gtgttgaaat tttagtgaca ggcgaacgtg acaagcgggt ggatttagcc gatcttttgc
    32581 aaaagctggg cgaactcggg atcgacagct tattgattga aggtggttcg caactcaatt
    32641 tcagcgtgct ggaacagggg ttagtcaatc gagtacattg ctatattgcc ccgaaactga
    32701 ttggcggcaa agcggcaaaa accccgattg gtggcaaggg gattggcgag ttagcacaag
    32761 cggttaaatt acgtctaaaa tccaccgaat tgctcggaga agatattttg ttggattatg
    32821 aagtggactt gcttcgtaat taaattgaaa tttccttact ctcgcccgtt tacgggagag
    32881 agacagcata aaatttcgtt cagaaatttt atgcagagag aggggaaaat gagtgtaatc
    32941 ttccctctcc ctccgaaaat cctacggatt ttctcttccc tctcccgtaa acgggagagg
    33001 ggaatagtaa gataagcagt tctcagacta aattggaagt aaatcggaga aaaatttaaa
    33061 tgttcacagg cattatcgaa gaagttggcc agatagccca aattaagaaa caaggcgagt
    33121 ttgtggtggt aacggttaaa gcaaaaaaga ttctgaccga tgtacattta ggggatagca
    33181 ttgcggtaaa tggcgtgtgt ttaaccgtga cttcatttac gcaggagcaa tttactgctg
    33241 atgttatgtc agaaacctta aaacgtacat cacttggcga attaagtatc aacagctcgg
    33301 ttaatcttga gcgggcaatg gcggcaaacg ggcgttttgg tgggcatatt gtgtcaggtc
    33361 atattgatgg cacgggtgtg gttgcagaga ttacaccagc agataattca acttggtatc
    33421 gcattaaagc cgaacctaag ttaatgcgtt acatcattga aaaaggctca attactattg
    33481 atggcattag tttaacggtg gtggatgttg atgcggaatc tttccgggta tcgattattc
    33541 cgcataccat taaggaaacc gacctcggta cgaaaaaaat cggtagtttg gtgaatttag
    33601 aaaatgacat tgtcggcaaa tatatcgaac agtttttatt gaaaaaagag cctgaaaatc
    33661 cgcaaagtaa aattactgcg gactttctta aaaatgcagg gttttaacca aataaaggac
    33721 aaataatgtt taagttttca acggtagaag aagcaattca agcaattgca caagggaaaa
    33781 ttattttagt cagcgatgat gccgaccgtg aaaatgaagg ggacttcatt tgtgcagcgg
    33841 aatttgcgac accggaaaat atcaacttta tggcgaaata tggtaaaggg ttgatttgta
    33901 cgccgatttc gacagaaatt gccaaaaaat taaattttca cccgatggtg ctagagaacg
    33961 aagataatca tcaaaccgca tttaccgttt ctgttgacca tattcaaacc ggcaccggta
    34021 tttccgcttt tgagcgttca ttaacttgcc tgaaaatgct tgatgaaaat gctaagccgg
    34081 aagattttag acgtccgggg catgttttcc cattagtggc aaaagacgga ggcgtattag
    34141 tgcgtaacgg tcataccgaa gcaactgtgg atttagctcg tttggcgggc ttgaaaccgg
    34201 cagggctttg ctgtgaaatt atggcagaag acggcacgat gatgcagatg ccggaattac
    34261 aggcatttgc acaagcacac aatatgccgt ttattactat tcagcagtta caagagtatc
    34321 gtagaaaaca cgacagcttg gtgaatgtgg tttcggtggt aaaaatgccg accaaatacg
    34381 gtgagttcaa agcacacagt ttcgttgaaa ctatttcagg caaagaacac gtcgctttag
    34441 ttaaaggtga tattggtgat ggcgaaaatg tattatgccg tatccattcc gaatgtttaa
    34501 ccggcgatgc ctttggctca caacgttgcg attgtggtca gcagttcgca gcggcaatga
    34561 accaagtgga gcaagagggc agaggcgtgg tgctttattt acgccaagaa ggacgtggca
    34621 tcggtttaat taataaactg cgtgcttacg aattgcaaga tagaggaatg gacacggttg
    34681 aagccaacct ggcattaggt ttcaaagatg atgagcgtga atattatatc gccgctcaaa
    34741 tgtttgaaaa attaggcgta aaatcgattc gtttgttaac caataatccg gcaaaaattg
    34801 aaggactcat tgagcaaggt ttaaacgtag tggctcgtga gccgattatg gttgagccaa
    34861 acgaacacga tttggaatac cttaaagtta aacagcacaa aatgcgacat atgtttaatt
    34921 tctaatccaa tactctctcc ccttgtggga gagagacaga aaaatacttc gttcagaagt
    34981 atttttcaga gagagggtat attttttaga aaaagtttgc aatttcccct ctccctgatt
    35041 tttcttctga acgaagaaaa atctatccct ctcccacaag gggagagggt tattgagtat
    35101 caaatttatt ttaaagaagg aaaacaaaca atggcaacat ttcaaggaaa ctacatcgca
    35161 actggtttaa aattcggtat tgtggcaact aactggcaca agatttttat cgatcaactg
    35221 ttaaacggtg caaccgataa attattgcgt cacggcgtag aagaaaaaaa tatcgacacc
    35281 gtatgggtgc cgggtgcatt agaaatctca attgcagcga aaaaaatggc acaaagcggt
    35341 cgttatgatg cgattatctg cttaggtgcg gtcgtgcgtg gagcaaccag ccactatgat
    35401 gtggtagtga acgagtcagc aaaaggcatc agctcttctg ctttagaaac cggcgtgccg
    35461 attattaacg gtattttaac ggtggaaaat ttagagcaag cgattgagcg ttcaggcact
    35521 aaagccggta ataaaggcga agagtgtgca atggtagcga ttgaaatggc gaacctatta
    35581 aaagccttag cgtaatcagc gataaaatcc ccttagaccc aagagcctaa ggggattttt
    35641 ttattttctg cgtagtaaca ggctggcaat gacacaaaat aggctgaaac tgtaaattaa
    35701 ccagtgacct aattgtttaa acggcgtatc gcctttggtt ggcacaatgg tggcagttag
    35761 tgcatcagca gtaaattgcg gtagttgttc aattactttt ccgttggcat caacaatggc
    35821 ggtaataccg gtattcgcag ctcgaagcaa tggtttgcca agttctaacg ctcgcattct
    35881 tgccatttgg aaatgttgcc aaggcccgat ggaagaacca aaccacgcat cattggtgat
    35941 agttaataaa taatctgaat tttggctttt ttggttttgt tgtaactgat caccaaaaat
    36001 aatttcatag caaatcgcca tattaaatcg gttgtttttc gccaagaatg atggttgaac
    36061 gaaactgcct tgtgaaagat taattggtag aataaacact tcccgcatcc aatccagcac
    36121 cgagccaaac ggcacatatt cgccaaacgg cacaaggtga tgtttgttgt agcgagggtt
    36181 gctgtgcagg gcatattccc tctctttttc gcctaatagc acgctactgt taaacagttc
    36241 ctcttgctca ttttgataga gtgtgccgat aataatttca cttccgtgtt ggcgagctaa
    36301 gtgatcgagc gagccaagca gcgggctgat ttgattttca agtgccggaa tggcggattc
    36361 aggcaaaata atcagttcac tgttacctaa taggggcaga atgagctgtt cgtaggttcg
    36421 tacgctgtgg ttgaaatgtt gcggatccca cttcattttt tgctcaatat tcccttgtac
    36481 taaactcact acaagcggtt gtttttctgt atcaatttgc acaaattgga gaaagcgagt
    36541 ggcaaaactt aagccaaaaa tgaccgctag taccatcaat gatggcacag ttttgttctc
    36601 ttgctgaata attttcacta gatagctact tgcaactatt accaagaaag tcaaaccttc
    36661 aacgcccaaa atcggcgcaa taccagcaaa ggggctgtct attaagctat agccgaattg
    36721 tagccacgga aaaccggtaa ataccacgcc tcgtaaatat tcggtaaagg taaaaatcgc
    36781 agccaatgca aacggattat tcagtttgag cctgtgtgaa actacactaa acagcagatt
    36841 ataaatagcg agatagcacg ccaacaggaa tactgctatg tagcttacta tggtaggaac
    36901 accaccaaat tgggtcatac tcacagaaac ccagtttaca ccggtgcaga agtagccgat
    36961 agaccaagca aaggttgccc ataatgcggt ttttctgttt gccagagtgg ctgaccaaac
    37021 caagccggct gcggaagcaa aggcaagaat ccaaatatca aaaggcgaat aggcgaaagt
    37081 gccgattgca cccagtatga ttgcaaggag acaagcggtt aaaaaaggcg gattttttgc
    37141 aaaattcata ataactcact aaataaatga ggcacgccga aacgtgcctt gattgaaact
    37201 cactatatta ttcttcttcg ttaggagagg ttttttccat tttctctaac tgttcatcgg
    37261 aaagtgtgac tcgtagctga atcaattggc ggctattagc tgaggtgact ttaaaatcaa
    37321 ttccgtttaa ctcaatttgc tcatctcgtt tcgggaaata accgaaagcc tgcatcacta
    37381 aaccaccaat ggtatccacc tcttcgtcat taaagtcggt agcaaaaaat tcattgaatt
    37441 ttttgatgtc ggtgagcggt aataccgcat aagtatgtct tgaaagctgg cgaattggtt
    37501 tgacctcttc ttcatcaaac tcatcttcaa tatcacccac aatttgttca agaatgtctt
    37561 caatggtgac taagcctgaa accgcaccaa attcatcaac cactactgcc atatggaagc
    37621 gttctgaacg gaactctttt agcattcggt ctaggcgttt gctttccggt acaataaccg
    37681 cagggcgtaa tacctgttgc agattaaagg gttcagagtc agaacgtaaa tatttcaata
    37741 aatctttaga gtgaagaata ccttcgatag tatctttctc accccgaatc accggaaaac
    37801 gagagtgtgc ggattcaata attaaatcaa tacagacatc taaaggttca ttggcatcaa
    37861 taaacacaat ttgcgcacgg ggaatcataa tatcccgcac tcgtaattcc gagatttcca
    37921 ttactccttc gatcatctct ttggtgtcgc tgtcgatcaa ttcattttca acagagtctc
    37981 gaatcacttc gactagatct tcacggtttt taggctcgtt ttgaaaaagc ccgctaaata
    38041 gagagtgtaa aatcgatttt ttttctgatt tttcggtggt gtttacactt tgctgttcat
    38101 cactcatagt ttgttccact taaataaagt acgcttataa taagcaaatt cagtcacaaa
    38161 gcaaataaaa cattgctatt ttcactcaaa ttagcatagg ataagcaaaa atctttttat
    38221 ttcttcatat tttaggagtt tgaaatgaaa ttaaccaaaa tagcattaag tttaacagcc
    38281 ttagttgtca gttcgatgag tgtggccggg acgttaagta catcatcaat ggtggacatt
    38341 ttagcctttg acgggcaacg tgttaaatcc ggcacgactt cggttcaaat gagtgagaat
    38401 aaaacgcatc aagtggtagt ggaagtcggt gggacagttg aaggggattt tttcacctct
    38461 gatcaaatca ttttgacttt ccaaggcagt gcggaaaatg caaaattaga aacgccaaga
    38521 ttaaattcaa agttagatct tcgtaaattc caagagaatc agactgtggc aattaaaacc
    38581 gattcaggta aggttatttc acataaacaa gatttcttaa aaggggaagg tttccttgcg
    38641 aaaacaagag ttgaagataa tttaacgaaa tataacttag cgaaaaaaac agcttcagtt
    38701 gaacagtttg cgacggcacc tcttgaagca aaaggacaaa ttgtggtgga tacaaataaa
    38761 gtttcacaag aagaattaca gcttttattt agaaaggcag ataaagacac ccaaaaacgt
    38821 ttcttagaat gggcgaagaa aaatataaaa taaacctata tcaattaata agcggtcatt
    38881 tctcgccaat tttttgcaag gtgttaaaaa aatgaccgct catacaatga gatttaccag
    38941 caataatagc agtaacgcca gcctctatac atatagtctc tatcgtaatt ccaacgaatt
    39001 tcttcaagtt ctacttgtgc cttgtaattt tgccaagcaa gcttataaca ggcttggaac
    39061 attggggcat tgactttttc ggcatagcgt ttcttaaatg ctttctcttc ttgttcggtt
    39121 tggctaagcg gcggattaaa ttgttggtac attaactccg ccgtttctac atcacattgt
    39181 ttggcgagct gaacttgcaa atcttgttct gcccgaattt gcttcgcttt acgttcagct
    39241 tgttgctctg gagttaaagt acagctactt aacataagtg cgagtgaaaa aatgcagcct
    39301 aatttgagtg ttttcattgc tgaatcctct agttgaaatt ggtgatttat tctaccgctt
    39361 ctaactcact ttcttcaagt tcatcagcca tagcactaag ggcatcacgg ctaagttgtg
    39421 cgagggcttt ataaaaacca ttgtcgaaag cttctatttt tcctaagaat ttgcctgcac
    39481 aaggtagtaa aaattgttcg aataatattt tttgagctaa ggcagaatcg agattatctt
    39541 cgatccaaga tgccgtgaga aatagtaacc caatgtgatc ggcattttct aattcaggca
    39601 ttgcccgctc ttgtctaaaa gctacaaaat tattaactga taatccatag gctgaaattg
    39661 ttggagaaat agccccattt tcagcaaaaa gcgcttgata gcttgctgct aattgcgtag
    39721 ggttagcatt cttttgtaag agagtcagcg cattttcact ttggctatcc gtatttaatg
    39781 cccagacttg gcgtaatcct ccttgggcaa gccagttaaa tgtgccagct aaaatagggt
    39841 cggtagggtg acgataaaat aagttgccaa acaaacggca aagcagggaa aaatcgttaa
    39901 tggtagtttc gttcataatt tgaaatagat agaaaaaaga attgttagta tagcagaaca
    39961 caagagagga ctgaatgaaa tatataggcg cacacgttag tgcttcaggt ggggtggaaa
    40021 atgcagtttt gcgttccgta gaaattggtg ctaatgcatt tgcgttattt actaagaatc
    40081 aacgtcaatg gcaggcaccg gcattaaaag ccgaaactat cgaaaaattt aagcgttttt
    40141 gtaaagtgca tcatttttca gcagagcaaa tcttaccaca cgatagctat ttgattaatt
    40201 taggaaatcc ggaagcggag gcattggaga aatctcgtgt agcatttatt gatgagatgt
    40261 ctcgagcaaa tcaattaggt ttaaaattgt tgaattttca cccgggggcg catttaaagc
    40321 aaatttccga gcaagattgt ttggctagaa ttgcagaatc gatcaatatt gcagttgaaa
    40381 aagtaccgaa tgttattgcc gtgattgaaa atacggcagg acagggttct aatttaggtt
    40441 ggcatttcga tcatttggca actattattg agcaagttga ggataaaagc cgagtggggg
    40501 tgtgtttaga tacttgtcac ttattttctg ccggctatga tattagttct tatgaaaaga
    40561 gcgaggcagt atttaatgat tttaaccaaa cggttggttt tcattattta aggggaatgc
    40621 acttaaatgg ttcaaaaaca ccattaggca gcagagtgga tcgtcatcat accttaagag
    40681 aaggcacaat aggaaccgaa gtgtttgcat ttattatgca aaatatgcat tttaaccata
    40741 ttcctatgat tttagagaca atttcgcctg aaatttgggc agatgaaata aaatttctac
    40801 gcacattgga actaaaatag gttatactgg tctgagtagt gggtctagca gagtctagac
    40861 cttattttgt tatctttttt aatcttttag aagatttagt taaggaattt accgctgtaa
    40921 ttgttctggc gagacgagac ataaattatg aaaaaaaatc tttttgcaac aaccttcaag
    40981 cccgtattta ttgcttctat tttgtctgtt tttggagggt attcttccat tgctgtagca
    41041 agtttaagtt ctaaaccggc cacaccaaat caaatcattg caagtaaagc agaaagatta
    41101 gctaagtctt cttcagtatt taccaatcga gcaaatcttc caacttcttc cgctcataca
    41161 gcgaattata gtggtcgtat taatagtgtt tatcataatt gggtagggac acgctatcgt
    41221 ttaggcggca caacaaaagc aggaattgat tgttccgcct ttgtgcgtga agtaatgggc
    41281 aaagcattta gtaaagatat gcctcgttca actgcagaac aacgccatgt cgggcattcc
    41341 atttcaaaat ctgatttacg cccaggtgat ttagtctttt tccgtaagaa taaccatgta
    41401 ggggtttata ttggtaatgg taaatttgta cacgctagtt caagtagagg ggtaaccacc
    41461 agctcattgt cagaaagcta ctggtcaaga aactacacac aatctcgccg tgtaatttaa
    41521 taaattacaa ttccaagatg aaaagaacac tcacttttgc gagtgttctt ttttaattaa
    41581 aaaagtttat gctacgcgtt gcttagcttg tgtaaatgct ccacgagtac gcatttgatg
    41641 aaccacatta gtaattacac ctgctatttt tacttcagcc caatcagtaa ttctaagatt
    41701 tgattcgctc acatctaatg aaaataaaat tttttcagca ataccttccc cattctgaat
    41761 ttcattaaag aattgataga atttatattc cccatctttt tcaagcacca atagatcatt
    41821 aactaaatat tggttggtct gttctacaat caataaatcg tctagttcaa ttccccacgc
    41881 gattaaattt gggtttttca cgtggataaa aaaagtgtct cttgggcgtt tgatacaaag
    41941 tgagttaaga tcgagcttta cagagcggct gctattgaaa tcccgataaa gcggaatcgg
    42001 ctgataagct gccgtttgat ctgaaatttg tctaattgaa gccatagtaa aatcctctat
    42061 ctgttttttt atacagggta ttttactggc taaaatacca gtgtcaacca ttattttgga
    42121 attttttgta aatttaacca gtgttttgac cgcttgttat cctttaaaaa gcaataaaaa
    42181 agcacccata gggtgcttct tatgcttaaa agctgttatt ataggctttc agtgaatgta
    42241 cgagtaataa catcgcgttg ttgctcaggg gttaatgagt tgaaacgaac tgcataacct
    42301 gaaacacgga tcgttaattg aggatatttc tcagggtttt gaatcgcatc ttctaatgtt
    42361 tcacggcgta aaacgtttac gtttaagtgc tgaccacctt caactttaat cgttggtgca
    42421 acattaacgg gtacttcacg gtatgcgata tcacctaatt cgctgatagc aacaacttga
    42481 tcttcttcaa atcctgcttt tgcagctaaa caacgagctt catttttagc ttcgtctaat
    42541 aaccagaaag agtttaataa gttgctgttt gatgattctg tgatttgtac acctttaa
//
LOCUS       DANLRW010000005        42194 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.005, whole genome shotgun sequence.
ACCESSION   DANLRW010000005 DANLRW010000000
VERSION     DANLRW010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 42194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42194
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.005"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            370..666
                     /locus_tag="PXA71_000202"
     CDS             370..666
                     /locus_tag="PXA71_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL5104353.1"
                     /translation="MTAITIPQFEEVTSKQFQSEFGRIVDIVKGKTPVAITQYGRPTM
                     VLFPYDQAVEARRLLAKQRLLEMLAERDKNPPAALAEITLEELDKMIDEERNAL"
     gene            656..1072
                     /locus_tag="PXA71_000203"
     CDS             656..1072
                     /locus_tag="PXA71_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative toxin-antitoxin system toxin component,
                     PIN family"
                     /protein_id="HDL5104354.1"
                     /translation="MHSDYLVIDTNILISGLLFPKSNPNLAVKKALLGYTICVSQATF
                     DEFLEVSARPKFAKYFSIQEREEFIANLLDAVKFVEIKETITDCQDPKDNKFLEVAIS
                     AKAKYLVTGDKKDLLSMNPYRNVEIISVSEFLAETR"
     gene            1072..2730
                     /locus_tag="PXA71_000204"
     CDS             1072..2730
                     /locus_tag="PXA71_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HDL5104355.1"
                     /translation="MKRFLTLFLLLFSSFSLAETHQIGILAQRGEAYTRTHWQPWVDW
                     LNSQFPNERFELVPLGINEASRRAELDFLLTNQAQFFYLSNQNVRWLATLNSPFSANG
                     EQGAVGSSIWVRADSHYQQLSDLKNQTISAVDNDAFGGFLLGLYQFHQAGMRQNRDFS
                     VQFSGFPVENALALLAEKQVEAAIVPVCLLEELEKEGKFKRSDFRLILQNPQAQGCLA
                     STPLLPNWSLAAMENVPNELAVQLATRLLNSHNPDLPRWTLPFSSAQADHILRELYRH
                     PQQKSLWATVLDWVRLNKFGLLAVVLFILLNLVALRYQVYRKSKALQQAHCKMQQYQQ
                     ELTRADRLALLGEMTTGFAHELKQPLSAVRMYAEGLKSQNSDPYQQRILDKLIAQVDR
                     AVKTMQSIRDWAQNRPSGEPQAVILNQLITNVIEFVAVENRQNAQISLIADRTFRLNL
                     HATVLEQVLTNCLLNALQAGASEISVRLQAVENGLEIAIEDNGGGFSPAQLEFPFVPF
                     RTDKPHGLGLGLVLCQRLMQSLNGRIVLANGENGAKVVLLLPQI"
     gene            2816..3463
                     /locus_tag="PXA71_000205"
     CDS             2816..3463
                     /locus_tag="PXA71_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDL5104356.1"
                     /translation="MIIHILDDEESILDAMSFLLAPLGVEIQTWQSSLDFLAQADLHR
                     QGVLLLDIRMPLPDGQQVHQQLREAQSTLAVVIMTAHGDVPMAVAELKKGAVDFLQKP
                     ASFEQLKQAIAQAEKVSEKAVKIREISQNYAKLTEKERNLVPLIMQGFTNKQIADKLA
                     ISVRTVEVHRANVMEKMQAESLAGLVQMIGELQYKGSGNCSATFSFDFCRINLLL"
     gene            complement(3447..4385)
                     /gene="ttcA"
                     /locus_tag="PXA71_000206"
     CDS             complement(3447..4385)
                     /gene="ttcA"
                     /locus_tag="PXA71_000206"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005634611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HDL5104357.1"
                     /translation="MTDDIQKSDKKITYNFNKLQKRLRRNVGNAIADFGMIEEGDRVM
                     VCLSGGKDSYTLLDILLNLQQSAPVNFSVVAVNLDQKQPGFPEEVLPRYLESIGVEYK
                     IVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDMLATLF
                     LNMFYGGKMKSMPPKLISDDGKQIVIRPLAYCKEKDIIKYAEAKQFPIIPCNLCGSQP
                     NLQRQVVKEMLNTWDRQYPGRLETMFSALQDIVPSHLCDPKLFDFKGIKHGQTIEGIE
                     GDTAFDDVKIEAKTFLYEDDDNNFAEAGMIQFKEVN"
     gene            complement(4448..5161)
                     /gene="ubiG"
                     /locus_tag="PXA71_000207"
     CDS             complement(4448..5161)
                     /gene="ubiG"
                     /locus_tag="PXA71_000207"
                     /EC_number="2.1.1.222"
                     /EC_number="2.1.1.64"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-polyprenyl-6-hydroxyphenol
                     methylase/3-demethylubiquinol 3-O-methyltransferase UbiG"
                     /protein_id="HDL5104358.1"
                     /translation="MQNVDQQEITKFENMAKTWWDPNGSFKPIHLLNPLRLAYILEKS
                     NGLFGKKVLDVGCGGGILSEAMAKQGAIVTGIDMTSQPLEVAKQHAKESGLEIDYQQT
                     TIENFLAKMTACNQEKFDVITCMEMLEHVPDPLSIIQSCKALLKPDGVLFFSTINRTF
                     KAYMLVIIGAEYVLKMLPKGTHEFEKFIKPAELLAWCDQADLRCQEMRGYHFNPLTEK
                     FWLNNDVSCNYIATLKPNN"
     gene            5226..5606
                     /locus_tag="PXA71_000208"
     CDS             5226..5606
                     /locus_tag="PXA71_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine dimer DNA glycosylase/endonuclease V"
                     /protein_id="HDL5104359.1"
                     /translation="MTRINLVPPTELCDQHLLAEHRELTRIPNAVAKGKFSLKGQPED
                     YKLGEGHVRFFFNKLTFLKKRYDALHEECLARGFKVQYFWAEHLPQDPSLWLDYQPTE
                     TALTVNRERIALRMPANPRFSERK"
     gene            5703..8399
                     /gene="gyrA"
                     /locus_tag="PXA71_000209"
     CDS             5703..8399
                     /gene="gyrA"
                     /locus_tag="PXA71_000209"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HDL5104360.1"
                     /translation="MSELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLFSMDQNSNTYNKPHVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLP
                     TKIPALLVNGSSGIAVGMATNIPPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFP
                     TGAIINGRKGIEEAYRTGRGKVYVRAKASVETTDKGREQIVVTELPYQVNKAKLIEKI
                     AELVKEKKIEGISKIDDYSDKKGISIVIEVKRDAVGEVVLNHLYSLTQMQVTFGINMV
                     ALDNGQPKVLNLRQIIEAFVKHRREVVTRRTIFELRKARERAHILEGLAIALANIDPV
                     IELIRASKTAEEAREGLLARPWALGNVAPMLEAAGVGASRPEDLPEHLGVRDGEYYLS
                     EAQARAILELRLHRLTGLEHEKIVEEYKELLTEIGELIHILTSPERLMEVIREELERV
                     KTDFNDERRTEITAASGDINIEDLIAQEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGK
                     SATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLKVYQLPQASRGARGTPIVNILPL
                     VKEENERITAILPIPNGEFSADKFIFMATASGVVKKVSLDAFSNVRASGLIALKLREG
                     DELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAMGRTATGVRGIKLSTTEISSEEIE
                     EAEIIETDNEEAEDSSSVSLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKS
                     RATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVR
                     IIRTAEDEQVVSLERVCEPEDDENESLDALENAETAETSTEE"
     gene            8494..10458
                     /locus_tag="PXA71_000210"
     CDS             8494..10458
                     /locus_tag="PXA71_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5104361.1"
                     /translation="MALINLSNAYLGFGDHPLLDHTELHIEPGERVCLVGRNGAGKST
                     LMKILAGEVQLDDGKLVFEKDIVVTRLEQDPPRHIEETVFDYVAEGIAHLADLLKQYH
                     HISLQMQTDYSDELLAKLSAVQSQLEHANGWQFENRIQDTLKLLELAPDKRLCELSGG
                     WVRRAALARALVADPDVLLLDEPTNHLDIEAIAWLENLLLDFKGSIIFISHDRAFIRK
                     MATRIVDLDRGKLVSYPSNYDKYLEEKAEDLRVEALQNELFDKKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKALREERRNRREVQGTAKIQIDNTARSGKIVFEVENAGYEIGGRTL
                     LKNFSTTILRGDKIALIGANGIGKTTLIKLLLGEIQPTSGSVRCGTKLEVAYFDQYRV
                     DLDPEKTVMDNVADGKQDVEVNGVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNCLL
                     LAKLLLKPNNLLILDEPTNDLDVETLELLEEMLTDYQGTLIIVSHDRQFVDNTVTECY
                     FFEGEGVVNKYVGGYFDAKQQQENYFAATADKRLNSSKNLQKIEEKAPLAEQEKQKAD
                     QEKTKAEPTKKTKLSYKEQRELDELPAKMEQLEADIEALQAEVNSAEFFAKDPSYTNA
                     QLQKLADTEAALEQAFERWEALENIKNGNI"
     gene            10540..11298
                     /gene="tcdA"
                     /locus_tag="PXA71_000211"
     CDS             10540..11298
                     /gene="tcdA"
                     /locus_tag="PXA71_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HDL5104362.1"
                     /translation="MTERLDNYEQRFGGIGRLYTPEGLEKLRRSHICVIGIGGVGSWA
                     VEALARSGIGKITMIDMDDICVTNINRQIHAMSGTVAQLKTEAMKERIERINPECVVE
                     IIDDFLTQDNLADYLNRGYDYVIDAIDSLRVKAAMIAFCKRNKIKIITTGGAGGQTDP
                     TKIQITDLSKTVQDPLAARVRSLLRKEYGFSNKNKFGVECVSSTQQLIFPQMGEACEV
                     SATMNCANGFGAVTMVTATFGFFAVSRVIDKLLK"
     gene            11345..12712
                     /locus_tag="PXA71_000212"
     CDS             11345..12712
                     /locus_tag="PXA71_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LOG family protein"
                     /protein_id="HDL5104363.1"
                     /translation="MAIHRVNPKGSMEQLSHLEMELLAKNTQGNLHQLYRNCSLAVLN
                     SGVHTDDSRALLSQYPDFEIRLLTREKGVSLELHNPPETAFVDGKMILNIQYHLFAVL
                     RDIVFVNALKNAIRPLEETSLEALTTNTVFSILRNAKAIEMNTDPNLVVCWGGHSINE
                     TEYQYCRAVGQEFGLRELNIVTGCGAGVMEAPMKGAAIGHANQRYKNGRFIGITEPSI
                     IASEPPNPIVNELVIMPDIEKRLEAFVRLGHAIVVFPGGPGTLEELLYIIGIKLNPAN
                     HAQQLPLILTAPKESADYFYAIDQFIGETLGEEARSLYEIIIDDSVLVARKVKQAMIE
                     VKSSRYESGDAYNFNWSLKIEEDFITPFIPTHENMANLNLSLAQPKEQLAANLRRAFS
                     GIVAGNIKPETSDLIEKYGVFKLHGDRKLMEHIDKLLERFVVQHRMKIPTGEAYQPCY
                     EIVKG"
     gene            12732..14279
                     /locus_tag="PXA71_000213"
     CDS             12732..14279
                     /locus_tag="PXA71_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HDL5104364.1"
                     /translation="MYLKHIEISGFRGINHLSLQLRPNMVLIGENAWGKSSLIDALSL
                     IFNLEQALYQFQFKDFHIQYTDTPNQVRDIQLVFTFCEEHQHDLAVQFPAYLAQAAFY
                     IDNHRCVSLAVTGKLHGEQISTDYQFVDQSLKPIQIEQAENAIRQFIYHHPVYRLRDA
                     RLNNRVHNELLLKGSSQLEDDFQRELNALSSLLKYYFLTSQSRYLIKTSMQDTALWWE
                     KVKSLCLRLKQQPELVESAQQHISTLFLFNPRSTVIEKPIILFEDLNAQLHPRMIAIF
                     WELLGFLPSQRITTTNSIELLSQVPLREICRLVRHHDHTQAYWLERHSLGKEDLRKLT
                     FHIHHNRGLALFAKAWILVEGETEVWILQELARLLDIHLEMEGIKIVEFAQCGLRPLI
                     KYARAMGIEWYVLTDGDDSGKRYADTVKSMEEDFAHRLTMLPQKDIEHFFYKAGLRNV
                     FIQLANWRSQEKYPVSYIIKRAIQRSSKPDLAIALANEMGQRGEHSIPTLFKQLFADV
                     LALINKV"
     gene            14502..15536
                     /gene="metN"
                     /locus_tag="PXA71_000214"
     CDS             14502..15536
                     /gene="metN"
                     /locus_tag="PXA71_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HDL5104365.1"
                     /translation="MIQLKNISKQFEVKGKKITALDNVNLEVPRGTIYGVIGASGAGK
                     STLIRCVNLLERPTIGQVIVDGQDLTAMSDKELIHARRNIAMIFQHFNLLSSQTVFEN
                     VALSLRLSNTPKEQVEKKVNELLDLVGLTDRKDVYPANLSGGQKQRVAIARALASDPH
                     VLLCDEATSALDPATTQSILQLLKDINKRLGLTILLITHEMEVVKRICDRVAVIDKGQ
                     LIESGSVSEIFSNPKTELAQKFIQSTFHFELPQEYTEQLSSSPTEHSKPIIKFEFTGR
                     SVDAPLLSMASKKFGIDFSILMSQIDYAGGVKFGFVIAEVSGNPDSIAEAKFYLIDNN
                     VKVEVLGYVG"
     gene            15526..16203
                     /locus_tag="PXA71_000215"
     CDS             15526..16203
                     /locus_tag="PXA71_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5104366.1"
                     /translation="MWADFMQEMTPQMWSLVWESTFETVYMGFVATALAVVIGLPIGF
                     LAFLTGKGEILENPRLHQVLDVVINIGRSIPFIILLIILLPFTRLVVGTTLGTTAAIV
                     PLSVSAIPFFARLTSNALLEIPSGLTEAAKSMGATNWQVVTKFYLPESLPILINGITL
                     TLVALIGYSAMAGAVGGGGLGNLAISYGEHRNMVYVKWIATIIIVAIVMISQKLGDHL
                     AKRYDHR"
     gene            16226..17059
                     /locus_tag="PXA71_000216"
     CDS             16226..17059
                     /locus_tag="PXA71_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL5104367.1"
                     /translation="MSFKKILGVALVSALALTACKEEKKAESTAAPAAQAPAKIKVGV
                     MSGPEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLDANAFQHKPYLDKD
                     SQSKGLNNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILLEKQ
                     GLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAAKALDDVDLAVVNNTYAGQVGLN
                     TQDHGVFVESKDSPYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKHFKDGVVKG
                     W"
     gene            17142..17972
                     /locus_tag="PXA71_000217"
     CDS             17142..17972
                     /locus_tag="PXA71_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family lipoprotein"
                     /protein_id="HDL5104368.1"
                     /translation="MNFKKLLGVALVSALALTACKDEKAQAPATTAKTENKAPLKVGV
                     MTGPEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLDANAFQTVPYLEQE
                     VKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHG
                     LLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSP
                     DKDGIIVESKDSPYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKLFNGGVVKGW
                     "
     gene            18024..18815
                     /gene="metQ"
                     /locus_tag="PXA71_000218"
     CDS             18024..18815
                     /gene="metQ"
                     /locus_tag="PXA71_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HDL5104369.1"
                     /translation="MKIMKLAGAVAIFSLFLTACNDKAEKLKVGVISGPEHKVMEVAA
                     KIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGYKLVPVGN
                     TFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNLARALILLEKQDLIKLRADAGLKAT
                     SVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGQNGLTPTKDGIFVEDKDSP
                     YVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEEFKGAMIKGW"
     gene            complement(18860..20011)
                     /gene="metK"
                     /locus_tag="PXA71_000219"
     CDS             complement(18860..20011)
                     /gene="metK"
                     /locus_tag="PXA71_000219"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDL5104370.1"
                     /translation="MAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACET
                     YVKTGMALVGGEITTSAWVDIENLTRQVICDIGYTHSDMGFDAHSCAVLNAIGKQSPD
                     INQGVDRADPLEQGAGDQGIMFGYATNETEVLMPAPITYAHRLMEQQSKVRKSGKLDW
                     LRPDAKSQLTFAYENNKIIGIDAVVLSTQHAEHISQKELIEGVMEEIIKPVLPSEWLS
                     QNTKYFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGAARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNEILVKLIYQNF
                     DLRPYGLIKMLDLIKPIYRETAAYGHFGRKHFPWEKTDKAEALRAGAGL"
     gene            complement(20194..21036)
                     /locus_tag="PXA71_000220"
     CDS             complement(20194..21036)
                     /locus_tag="PXA71_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HDL5104371.1"
                     /translation="MKVGLVLEGGGLRGIFTAGVLDVFLDEHIHIDGAIGVSAGALFG
                     VNLPSKQKGRALRYNKKYAKDKRYMGLHSLLTTGNIVNRDFAYYELPSKLDPFDQQAF
                     EDSGMDFWVTVTNVETGEPEYIKIDNVFEQMEAFRATSSMPIVSKIVEIEGKKYLDGG
                     VSDSIPVQKFIEMGYDKIIVVLTRPLEYRKKPSSMWLFKRFYKKYPKLVQRWENRYAE
                     YNQAVEQIIQLNEKQQIFVIRPSRTVKISRLETDVNKIQAMYDLGVEDAKNALAGLRA
                     YLAK"
     gene            21096..21413
                     /locus_tag="PXA71_000221"
     CDS             21096..21413
                     /locus_tag="PXA71_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL5104372.1"
                     /translation="MADAEFMDFLLDQLSPISGLRSKKMFGEYCLFFDNKIVAIISKD
                     YRIFVKANPQTLPLFLAENAEQFHYFAKGKVQKMHYWSIPELAIEEADELVKWIRLGL
                     QAV"
     gene            21504..22217
                     /locus_tag="PXA71_000222"
     CDS             21504..22217
                     /locus_tag="PXA71_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease"
                     /protein_id="HDL5104373.1"
                     /translation="MNQKKLVSLIVVIVLAIISQIFSFFDKKEPSKAQEKSTQSSQSH
                     QVSTSSLGNYDVQMKNDRLKQHIVDTDYYTLALSWSPAFCQKQKRNNHGKIPSHLEYQ
                     CGGSADFGWVIHGLWPQSGKARSVDEHPRYCQGDLPMVAEQTIKQYLPESPGATLLQG
                     EWEKHGACAFNQADDYFAKQKELFNQLKLPDTEMSKLALFNWMRANNPHLQNVYLGGS
                     KDELYICYDKAFQPMDCPR"
     gene            22217..22711
                     /locus_tag="PXA71_000223"
     CDS             22217..22711
                     /locus_tag="PXA71_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HDL5104374.1"
                     /translation="MADLRQLKMQVQRQLKRDLERANHYFNTTFTPPSISYAVRGVKA
                     GVAYLERNEVRFNPVLLQENEQAFIRQVVPHELAHILVYQHFGRVQSHGKEWKMMMET
                     VLGVPAEIYHCFDTQSVQQQFSYQCACQTHQLSIRRHNAVMRDKKSYICRLCKTQLHF
                     VEKS"
     gene            22816..24096
                     /locus_tag="PXA71_000224"
     CDS             22816..24096
                     /locus_tag="PXA71_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL5104375.1"
                     /translation="METIVIVGGGAGGLELATYLGNKLGRKQKAKVVLIDRNATHLWK
                     PLLHEVATGTIDEGTDALSYRAHAKNHSFEFQQGTLVAVDREKKTVSLAPIYNDQNQL
                     LVKERHISYDKLVIAIGSKSNDFGTKGVAENCIFLDGSEQAKDFQKRMMELFLRFSHS
                     ENKDVKIAIVGGGATGIELSAELYHVVKNLNSYGFGKLNRASLKVTLIEAGPRLIPAL
                     PEKVSVSAFHELKKAGVSVRLGTMITEARPDGLMTRLGEKIEADIMVWAAGVKAPEIT
                     REFGFETNRLNQIEIKDTLQTTVDESVFVIGDCASLIQDGKPIPPRAQAAHQMATRCG
                     KNIVALIEGKEMKPFRFNDKGSLLSFSKFGTVGNLMGNLVSGDMFIEGKIARLAYLSL
                     YRMHQVALHGCVKTGLIVLVGQINRFLRPTMKLH"
     gene            complement(24183..25220)
                     /locus_tag="PXA71_000225"
     CDS             complement(24183..25220)
                     /locus_tag="PXA71_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5104376.1"
                     /translation="MNVLKLISLKSILIASGIFLSAQAAQAEGRLTVYCSVQNNVCEE
                     MTKQFSHKYNVETKFIHGGTGTIFGKVKAEASNPQADIWYGGTIEPHFQAGELGLLEA
                     YRSPKQAEILPQFKSLVESEQGKFTSIVYMLVLGLGVNTEKLAKLGIEAPKKWEDLSD
                     PRLKGEVQLPDPRSSGTTYTFMTTLSTLWGEEKTFDYLKKLNNNVSQYVKSTLVTSNL
                     ARGESAVTVGFVHSYATEKEKGAPIEAIIPEGKVGYALGGVSIIKNARNLDNAKLFMD
                     WVLSKEAQEIPWKKHGVYQTPTNINAEVAPQSTKAEALDFVEIDYQKAGSSEEGKRLI
                     DKWLAEIKLAN"
     gene            25442..26140
                     /locus_tag="PXA71_000226"
     CDS             25442..26140
                     /locus_tag="PXA71_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HDL5104377.1"
                     /translation="MENSWKYAFKLITPIFMGYFAAGVAYGMLATNAGMPAWFTIVMS
                     FTVVSGTAQYAAIPFFVSGVGAVSVFLSTLLMSLRFSFYTLNMMEHKPISKAKSLVAI
                     AGLTDEGFAVLSSLPKEQKQALFFKIAVLCVAYWTFSTIVGVLLGDSVANYIPHLDFA
                     LPCLFAILAYEQYKNQKQWKPIVIALIGFLLARQITETSVLLVAILVAIVIVALLPQS
                     SSIKLEKGVENEHK"
     gene            26151..26453
                     /locus_tag="PXA71_000227"
     CDS             26151..26453
                     /locus_tag="PXA71_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HDL5104378.1"
                     /translation="MFAALVLGSQICRFLPEFLPKKVLSSPILQKLNKMLPLVIMLLL
                     LLTSLNFPKNGEGFNLILAQILALIGVLGSYVWLKNTFLSVALGIFGVNVFLSLLG"
     gene            complement(26574..27875)
                     /locus_tag="PXA71_000228"
     CDS             complement(26574..27875)
                     /locus_tag="PXA71_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL5104379.1"
                     /translation="MSLFKFEERGSNARQEIIAGLTTFLAMVYSVIVVPGMLSQAGFP
                     AESVFIATCLVSGLGSILIGLWANAPMAIGCAISLTAFTAFSLVLGQQVSIPVALGAI
                     FLMGVVFTLISATGIRTWILRNLPSSIAHGAGIGIGLFLLIIAATNVKLVVNSGMDIP
                     VKLGDFTSFPVLVSLIGLAAIIGLEKLKVKGSILWVIIAITIVGLIFDPNVKYTGFFK
                     MPSFGENSQFLNLDIMGALNTAILPVVFALVMTAIFDATGTIRAVAGQAGLLDKDGQI
                     INGDKALTSDSFGSILSGLFGTAPAAVYIESAAGTAVGGKTGLTAVVVGIGFLFMLFF
                     QPLAFLVPSYATAPALMYVGLLMLSNVSKLDFSDFVGAMSGLVCAVFIVLTANIVTGI
                     MLGFATLVIGRLISGEANKLNLGTVIIAIILVAFYAFDLAI"
     gene            complement(28008..28982)
                     /gene="secF"
                     /locus_tag="PXA71_000229"
     CDS             complement(28008..28982)
                     /gene="secF"
                     /locus_tag="PXA71_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HDL5104380.1"
                     /translation="MAIENVQQDVAEIKLPYKLIPFMKYRYVGFIFSLIVTALCIFTI
                     ATKGFNWGLDFTGGTVIETQFSQPADLAKLRTELENSGYGNALVQTTGSQKDLMIRLA
                     ASAGDMSVGNKVMEMIHQKLDPNATIKSIEFVGPNVGEELTQGAIYATLATLAMLLIY
                     VGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQIEIDLTFVAAILSVVGYSLNDSIVVF
                     DRVRENFSKVRRSSSIEIIDISLSQTLSRTLMTSVTTLFVVLALFYLGGPTLHSFSLA
                     LLIGIGFGTYSSIYIAIGVALQLGLKREHMVQPKVEKEGADQDAFIDY"
     gene            complement(28992..30833)
                     /gene="secD"
                     /locus_tag="PXA71_000230"
     CDS             complement(28992..30833)
                     /gene="secD"
                     /locus_tag="PXA71_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HDL5104381.1"
                     /translation="MLNRFPLWKNLMVIFVIAIGALYALPNLYGDDPSVQISGTRGQQ
                     ATPETLSQVQSTLSAMNIQPKSAVLENGSILVRLESSEQQLPAKEKISEALGNNYSVA
                     LNLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRK
                     EKLQYQAVKKGENFATEVEFADNDTAEKAVRLVRLSHPTLDILVNDNKVTLTPSAQAL
                     SESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKELLGATA
                     TLEFRLVNTEANVASAAKGIVPADSGLQNTRDGEPVVLRRKPSLGGEHIIDATSGTDE
                     RGLPQVSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQEVI
                     NVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK
                     QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGI
                     VLAVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLY
                     GVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI"
     gene            complement(30873..31166)
                     /gene="yajC"
                     /locus_tag="PXA71_000231"
     CDS             complement(30873..31166)
                     /gene="yajC"
                     /locus_tag="PXA71_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL5104382.1"
                     /translation="MQQGGGMEMIFILIIFGAIFYFMIYRPQAKRQKQQRDLLASLTK
                     GDEVLTSGGLIGKITKVTADNDNIVIALNDTTEVTIKRDFVVAVLPKGSLKSL"
     gene            31367..31924
                     /locus_tag="PXA71_000232"
     CDS             31367..31924
                     /locus_tag="PXA71_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HDL5104383.1"
                     /translation="MKKLFAQAVIFGAFFASSAFAHNVQLNQALPAVSVAKDGELAVA
                     GGKVSYKNWHSSSLAGKVRVIHHFAGRSSVKEKNEDLMTAIKNAGFDRSKYQTVTIVN
                     ADDAIVGTGVFVKNSVENGKLDNPHSQVVLDQQGSVKKAWGLKEKESFIAVLDKSGKV
                     QFTSEGKLSAKQIQEVIGLVKTLTQ"
     gene            complement(31965..32933)
                     /locus_tag="PXA71_000233"
     CDS             complement(31965..32933)
                     /locus_tag="PXA71_000233"
                     /EC_number="5.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HDL5104384.1"
                     /translation="MKLFTLENAFLRITLSDVGASWLSCIVKMPNEEREVLVTTSAKN
                     WQKQTAFFGATIGRYANRIANAEYRLNGKTYQLAKNNGEHNLHGGELGADKIVWQLES
                     QSEQAVKFSYFFADGEEGFGGEVKAFVEYRLTENELQISFDAVANQDTPLCLTNHAYF
                     NLQGSETILDHELIINADGYLPVDASGIPNAPLKKVESTSFDFRNAKKIGQDLLADDD
                     QKAVKGYDHSFHLAKNSENPTACLAVEDLKMELRTSMPALQLYTGNWLKGQPNLTKGE
                     YEDYAGVALEPEFFPNSLNQPELLQFGGITKAGEEYHHTISYRFII"
     gene            complement(33059..34222)
                     /gene="galK"
                     /locus_tag="PXA71_000234"
     CDS             complement(33059..34222)
                     /gene="galK"
                     /locus_tag="PXA71_000234"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HDL5104385.1"
                     /translation="MKPQEIALQQFEQHFGYKAERTVFAPGRVNIIGEHTDYNDGFVM
                     PCAINYGTAVSFAKRSDNKWRVFAIDLNQQDEFDLSQAIEPSEQKWANYVRGVVKFIQ
                     AKHPEFKQGADLAITSDVPMSSGLSSSAALEVSIGKTAQLLGDLPLSLPQIALIGQEA
                     ENKFVGCNCGNMDQLTSALGQQDHLVMIDCRSLEITPTPVPQGYSIAIINSNVKHDLV
                     TGEYNSRREQCEFAAHFFGKAKLRDVTAEQFIERASELSEENELAYKRAKHIISENQR
                     VLEAVEALKANDMVKLGELMAQSHDSMRDDFEITCPEVDCLAEIAQQAIGKNGGARMT
                     GGGFGGCVVCLVPNDKVEDLRQAVANNYEKQTGIKETFHVCTASDGVRECPAR"
     gene            complement(34232..35278)
                     /gene="galT"
                     /locus_tag="PXA71_000235"
     CDS             complement(34232..35278)
                     /gene="galT"
                     /locus_tag="PXA71_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HDL5104386.1"
                     /translation="MSEFVLNDHPHRRFNPLKNQWILVSPHRAKRPWQGQQEEIVQDE
                     KPSYDPSCYLCPGNKRITGEQNPNYTKPFVFKNDFSALLPDTPAPIPNDDPLFQISHT
                     QGESRVICFSPDHSKTLPQLSIEEITDVVTVWQEQANELKEHYQWVQIFENKGSMMGC
                     SNPHPHGQIWASNFLPNEIAIEDECQAKYFAQYGSPLLLDYAQRELDKQERIVAETED
                     WIAVVPYWAAWPFETLLLPKAKQFKSITDLNEAEKADLALALKKLTTRYDNLFNISFP
                     YSMGFHFAPFNGKENAHWQLHAHFYPPLLRSATVRKFMVGYEMMAESQRDLTPEQAAE
                     RLNAVSDTKHYKDK"
     gene            35491..36342
                     /locus_tag="PXA71_000236"
     CDS             35491..36342
                     /locus_tag="PXA71_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HDL5104387.1"
                     /translation="MERLNKFDAWLMNHKPNARLSGASRLLTEFWFFGLKEARACLFA
                     GLFFIAMFSVPKTGLWGLPRYDILLIFAIVVQIAMVKLGLETWDELKAISLFHLVGFV
                     LEVFKTSSNIQSWAYPDFAYTKLFNVPLFTGFMYAAVGSYIIQAWRLFDLKIKSHLPY
                     WLATLTALMIYLNFFTHHYIGDYRWYIAAFALGLYARTFVFFTPYDITRKMPLLLSFF
                     LIGFFIWLAENIGTFAGIWRYPNQFGAWSMVHMSKWSAWALLVMMTFTIIVHLKHIKQ
                     TVRVSSD"
     gene            complement(36428..37513)
                     /locus_tag="PXA71_000237"
     CDS             complement(36428..37513)
                     /locus_tag="PXA71_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5104388.1"
                     /translation="MEYRYYITTALVIAVLQLFLFNFAKTVSWLFNLSSKNRKTVGIL
                     TFLVANGLVILHLTRTFALFRIMAFILVLLLFAFFISFFTACIYKIFNGNTTVNRWLK
                     IAYPFAFFGLLGLGYYNAYTPTVVHYSVKLDKPLEKPLRIGMASDLHLGKLFGTKQLD
                     QLAEIFNQQKVDLILLPGDIMDDNTEVYVADKMQPHLAKLKAPLGVYATLGNHDFFGA
                     QETIAKEITDAGITVLWDQTAEINGKFTLIGRNDDLVKNRPSAEQLLQNVNTKLPVIL
                     LDHRPTEIEQHAKLPIDIQVSGHAHKGQVFPASIITKLIYRLHYGYEKIGFGHYFVTS
                     GYGFWGVPMRLGSQSEVMIIDVEGENP"
     gene            complement(37535..38515)
                     /locus_tag="PXA71_000238"
     CDS             complement(37535..38515)
                     /locus_tag="PXA71_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL5104389.1"
                     /translation="MLFDSIQFSIGVTLPTILLMLFGIFPRRRKFIDDTFCNMASKVV
                     FNFTLPPMIFLNMLKSPLDFSSQINLISTGVGGSILIYLWAEWWAARHIENRRYRCIF
                     TQGTFRTNAAILGIALILNAYGDKALAAASVYISCLVITFNVLAVITLTSSLSEKKVN
                     FGRLILSILRNPLILAVIAGLTFNYFELSHQIPTPLESAGKLMASLTLPLALICTGAS
                     INFKQLKQFNQGVESTINKIVLFSASIRLIFAPIFLLLLGKFVFQLPPMELGIVFVAA
                     SAPVASATYAMTRNYGGDGEAAANLIGITTLGSMFSASIGLFLLRQIGWV"
     gene            complement(38618..39716)
                     /gene="prfB"
                     /locus_tag="PXA71_000239"
     CDS             complement(join(38618..39640,39642..39716))
                     /gene="prfB"
                     /locus_tag="PXA71_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550889.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDL5104390.1"
                     /translation="MFELNPIKNQLTDLSERTAVIRGYLDFEHKVERLEEVNAELEQP
                     DVWNKPEKAQALGKERAMLEQIVNTIKALEQGIEDVEGLIELAVEAEDQDTFNEAQVE
                     ADELEKKLADLEFKRMFSGPHDSADCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKG
                     FKAELMEASDGDVAGIKSATVKISGDYAYGWFRTETGIHRLVRKSPFDANNGRHTSFS
                     AAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQN
                     GRSQHQNKDQAMKQLKAKLYELEMSKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DHRTGVEHRTTQQVLDGDLDKFVEASLKAGL"
     gene            39972..40880
                     /locus_tag="PXA71_000240"
     CDS             39972..40880
                     /locus_tag="PXA71_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HDL5104391.1"
                     /translation="MAKRPSDIDATLLQLEILRRIPKLPAKIDAKSLHQQLLDAGFER
                     DIRTVQRSLKMLCEHFDIECDERSKPFGYSWKIRSEGLALPILNEQQSLLLKLAEQQL
                     KYLLPANLMASMKPFFEQADRMVSGAKDKPEYQWLNKVCSTPTSLPLIPAKIKEEIFN
                     SVSQALFQNKLLKIEYQNQHGKKHQATIMPLAISQQGASIYLVCRYEGFDDNRLLALH
                     RIRKAEISTFSFERPKDFNLQAYQDAGHLGFGNGEKASLTFSISRDAGFHLTETPLAK
                     DQKILEESETHYRIQAIVADNDMLTW"
     gene            41181..41822
                     /locus_tag="PXA71_000241"
     CDS             41181..41822
                     /locus_tag="PXA71_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HDL5104392.1"
                     /translation="MPFQLTFCQQAGNQHQKNQDALFNGKAVYQWQLKNAESYLLDND
                     KVIFGVADGVSSHPRNHLASHYLMALLSQCQSLDSQWLRQAHGDFCEKLAKDYFGASC
                     TFVACELHHNGRGRMVNVGDSRAYKITANGEWQQLSFDHTILAEMKQKGLVKEGSNYA
                     SMYNGLTDCIVADFDADDFRIHIAEFQLEKGESILLCSDGLHEQLAPEAIQAI"
     gene            41989..>42194
                     /locus_tag="PXA71_000242"
     CDS             41989..>42194
                     /locus_tag="PXA71_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005637830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HDL5104393.1"
                     /translation="MKNDFHYAAELIRNADGILITAGAGMSVDSGLPDFRSVGGLWNS
                     YPPLKKFNLQFMQIATPLAYQERP"
BASE COUNT        12252 a         8566 c         9405 g        11971 t
ORIGIN      
        1 gtgttttttg acatatatta aatcctcttt gttaattaag ttagaaaaat gcctctgtga
       61 aaatcacagc catactagga aataaaagga tttaatttat aaatgaattg actataagca
      121 atataatcta tcgaattatc tcttttgttc aaggcaagta tggatacctg accgcaggcc
      181 tggagataga acctacatat aatatgctct actacattaa gccataaaaa atagaaaatc
      241 aagtgtttgt tcaagttttt atgttattga atttacaata actacaaaaa tttatcttaa
      301 ttggctcgat tgatttttac acaaaacata gctaacatat ccaaaatcac tcacattagg
      361 agcttaaaaa tgacagcgat tactatccct caatttgaag aggtgacttc taagcaattt
      421 caatctgagt tcggcagaat tgttgatatc gtaaaaggca aaacccctgt ggcgattacc
      481 caatatggca gaccgacaat ggtgcttttt ccttacgatc aagcggttga agctcggcga
      541 ttattagcaa aacagcgttt gcttgaaatg cttgcagagc gagataagaa tccgccggca
      601 gctcttgcag aaatcacgct tgaagagttg gataaaatga ttgatgagga acgtaatgca
      661 ctctgattat ttagtgattg atacgaatat tttgattagt ggtttattgt tcccaaaatc
      721 aaatcccaat ttagcagtga aaaaagcctt attaggctat accatttgtg tctcgcaagc
      781 gacttttgac gaatttttag aagtctccgc tagaccgaaa tttgctaaat atttcagtat
      841 tcaggaaagg gaagaattta ttgccaattt gttggatgca gtaaagtttg tggaaattaa
      901 agaaacgatt acagattgcc aagatcccaa agataataaa tttttagaag tggcgatcag
      961 tgcaaaagcg aagtatttag tgacgggcga taaaaaagat ctcctcagta tgaaccctta
     1021 tcggaatgtt gaaattattt ccgtcagcga atttttagcg gaaactcgct aatgaaacgg
     1081 tttctcactc tttttcttct ccttttttca tctttttcat tagccgaaac ccaccaaatc
     1141 ggcattctcg ctcagcgtgg ggaagcctac acccgcaccc attggcagcc ttgggtggat
     1201 tggttaaatt cgcagtttcc caacgagcgg tttgagctgg ttccattggg gattaacgag
     1261 gcgagccgcc gggcggagtt ggattttctg ctgaccaatc aagctcagtt tttctatttg
     1321 agtaaccaaa atgtgcgatg gcttgccacg ctcaacagtc cgttttcggc aaatggtgag
     1381 caaggggcgg tgggcagtag catttgggtg cgtgccgaca gccattatca gcagttaagc
     1441 gatctgaaaa atcagactat cagtgcggtg gataacgatg ctttcggcgg ttttttgctt
     1501 gggttgtatc agtttcatca agcaggaatg cggcaaaatc gggatttttc ggtgcagttt
     1561 agcggttttc cggtggaaaa tgcgttggct ttgctggcgg aaaaacaggt ggaagcggcg
     1621 attgtaccgg tctgtttgct ggaagagttg gagaaagagg gcaagttcaa gcggtcggat
     1681 tttcgcttaa ttttgcaaaa cccacaggcg cagggttgcc ttgccagcac gccgttgttg
     1741 ccgaactggt cgctggcggc aatggaaaat gtgccaaacg agctggcggt acagcttgcc
     1801 acacgcttgc taaacagcca caatcccgac ctaccccgct ggacgttgcc gttttcttcc
     1861 gcccaagccg atcacattct gcgtgaactg tatcgccacc cgcaacaaaa aagcctgtgg
     1921 gcaacggtgc tggattgggt tcgtctcaat aaattcggct tgttggcggt ggtgttgttc
     1981 attttgctca accttgtcgc cctgcgttat caggtctatc gcaaaagcaa ggcgttacag
     2041 caggcacact gcaaaatgca gcagtatcag caggaactga cccgagccga ccgccttgct
     2101 ttgttgggcg agatgacaac cggttttgct cacgaactga aacagccgtt gtcggcggtg
     2161 cgaatgtacg ccgaggggct gaaaagccaa aacagcgatc cttatcaaca gcggattttg
     2221 gataagctga ttgcgcaggt agatcgggca gtgaaaacga tgcagagcat tcgggactgg
     2281 gcgcaaaacc gcccgagtgg tgaaccgcaa gcggtcattt tgaaccaatt gattactaat
     2341 gtgatcgagt ttgtggcggt ggaaaatcgc cagaatgcac aaatctcgct gattgccgac
     2401 cgcacttttc ggcttaattt acacgccacg gtactggaac aagtactgac gaactgcctg
     2461 ctcaacgccc tgcaagccgg tgcaagcgag atatcggtgc ggttacaagc ggtcgaaaac
     2521 gggctggaaa ttgcaatcga agacaacggc ggcggttttt cccctgccca gcttgaattt
     2581 ccgtttgtgc catttcgcac cgacaaacca cacggcttag ggctaggctt ggtgctatgc
     2641 caacggctga tgcaatcgct caacggacgg attgtattgg cgaacgggga gaacggggcg
     2701 aaggtagtgc ttttactccc tcaaatataa atgtaggggc aggtcctgtg cctgcccgta
     2761 aatcctatca aattcagggc gggcacagga cccgccccta cggaaaaaag aaaaaatgat
     2821 tattcacatt cttgatgacg aagaaagcat tttagacgct atgtcgttcc tgcttgcccc
     2881 gcttggggtg gaaatccaaa cgtggcaatc cagcctagat tttttggcac aggcggattt
     2941 acaccggcaa ggcgtgctgt tactagatat tcgaatgccg ctgccagacg ggcaacaggt
     3001 tcatcaacaa ctgcgagagg cacaatcgac cctggcggtg gtgattatga ccgcccacgg
     3061 tgatgtgccg atggcagtcg ctgaattgaa aaaaggcgca gtggattttc tgcaaaagcc
     3121 ggcaagtttt gaacagctaa aacaggcgat tgcacaggcg gaaaaagtaa gtgaaaaagc
     3181 ggtgaaaatt cgtgaaattt cgcaaaatta cgccaaattg acggaaaaag agcgtaacct
     3241 tgtgccactg attatgcaag gtttcaccaa taaacagatc gcagataaat tagcgatttc
     3301 agtgcgtacg gtggaagtac atcgagccaa tgtgatggaa aaaatgcagg cggagagttt
     3361 ggcggggctg gtgcagatga tcggggagtt acaatataaa ggtagcggaa attgctctgc
     3421 tacctttagt ttcgactttt gccgtattaa tttacttctt taaactgaat cattcccgct
     3481 tcggcaaaat tgttatcgtc atcttcgtat aagaaggttt tggcttcaat tttgacatca
     3541 tcaaaagcgg tgtcgccttc tatgccttca atggtttgac cgtgtttaat ccctttaaaa
     3601 tcaaacaatt tcggatcgca taagtgggat ggcacgatat cttgcaaagc actgaacatt
     3661 gtttctaaac gccccgggta ttggcgatcc caagtattca gcatttcttt caccacttgg
     3721 cgttgtaaat taggctgaga accacacaga ttacacggaa taatcgggaa ctgcttggct
     3781 tcggcatatt tgataatgtc tttttcttta caataggcga gtgggcggat cacaatttgc
     3841 ttgccgtcat cagagatcag tttaggtggc atacttttca ttttgccgcc gtagaacata
     3901 tttaagaata aagtcgccag catatcgtca cggtgatgcc ctaatgcaat tttggttgca
     3961 cccaattcgg tggcggtgcg gtataaaatc ccacggcgaa gtcgtgagca aagtgaacag
     4021 gtggttttgc cctccggaat tttctctttt acgatgccgt aggtgttttc ttccacaatt
     4081 ttgtattcca cgccaatgct ttctaaatag cgaggcaata cctcttccgg aaatcccggt
     4141 tgcttttggt ctaaattgac cgctaccaca ctaaaattca ccggtgcact ttgctgtaaa
     4201 ttgagcaaaa tatctaacag cgtatagctg tctttaccgc cggaaaggca gaccattaca
     4261 cggtcgccct cttcaatcat accaaaatcg gcaatggcat taccgacatt acggcgtaaa
     4321 cgtttttgta acttgttgaa attataagta atttttttat cagatttttg aatatcgtct
     4381 gtcataatag ttgtactagg cttagaaatt agcggtgtat agtaaagatt tcgcactatt
     4441 ttgcaagtta attattcggc ttcagcgtag cgatatagtt acaactcaca tcattattga
     4501 gccaaaattt ttcggttaat gggttgaaat ggtagcctct catctcttgg caacgtaaat
     4561 cagcctgatc gcaccaagct aacaattcgg caggcttgat gaatttttca aattcgtgcg
     4621 tgccttttgg caacattttc agcacatatt ccgccccgat aattaccaac atataggctt
     4681 taaaagtacg gttgatggta gagaaaaaca gcacgccgtc aggtttgagc agggctttac
     4741 agctttgaat gatagaaagc ggatcgggaa cgtgttccag catttccata caagtaatca
     4801 catcgaattt ttcttgatta caagcggtca tttttgctaa aaaattttca atcgtggttt
     4861 gttggtaatc aatctctaac ccactttctt tggcgtgctg ctttgccact tcaagcggtt
     4921 gagaggtcat atcgatgccg gtaacaatcg ctccctgttt tgccattgcc tcacttaaaa
     4981 taccgccacc acagccgaca tctaacacct ttttgccaaa taaaccgttc gatttttcta
     5041 aaatataggc taaacgcagt ggattaagca gatgaatcgg cttgaaactg ccgtttggat
     5101 cccaccaggt tttagccata ttttcaaatt ttgtgatttc ttgctgatcg acgttttgca
     5161 taaactgttc ctatggtaaa tttagggcat tactataacg catttagcct aaaaggaaaa
     5221 tcagaatgac ccgaattaac cttgttccgc caacggaatt atgcgatcaa catctgcttg
     5281 ccgaacatcg tgaacttact cggattccga atgcggtagc gaaaggcaaa tttagcctaa
     5341 aaggacagcc agaagattac aaactgggcg agggacacgt tcggtttttc ttcaataaac
     5401 tcacgttttt gaaaaagcgt tacgatgcgt tacacgagga atgtttagca agaggtttta
     5461 aggtgcaata tttctgggcg gaacatttac cacaagatcc ctctctctgg ctagattatc
     5521 agccgactga aaccgctctg actgtaaatc gggagcgaat tgcattaaga atgccggcaa
     5581 atccacgttt tagcgaaaga aaatgaccgc ttgtacgcct ttttgttgct ttttatgcta
     5641 taatctcgcc aattttttcg ccttatttaa ggctctttta ctaataaaat taggaaattt
     5701 caatgagcga attagccaaa gatattattc ccgtaagtat tgaggacgaa ttaaaaacct
     5761 cttaccttga ctatgcgatg tcggtgattg ttgggcgtgc cttgcctgat gtacgagacg
     5821 gtttaaagcc ggtacaccgc cgagtgcttt tttcaatgga tcaaaacagc aacacctata
     5881 ataagccgca cgttaaatct gcccgtgtgg tcggtgatgt gatcggtaaa tatcacccac
     5941 acggtgactc tgcggtgtat gacactattg tgcgtatggc tcaaccgttc tcactacgtt
     6001 atatgttggt ggacgggcaa ggtaactttg gttctattga tggcgatgca ccggcagcaa
     6061 tgcgttatac cgaagtgcgt atgcagaaaa ttacgcagga attattaacc gatctcgata
     6121 aagaaacggt ggatttctca ccgaactatg acggcaaaga gatgattcct gatgtattgc
     6181 caaccaaaat tccggctctg ttagtcaatg gttcttcagg gattgcggtc ggtatggcaa
     6241 ccaatattcc acctcataat ttaggcgaag tattagatgg ttgcttggcg tatattgaaa
     6301 atgaacagat tagtgttgaa gagctaatgc gttatatccc ggggccggat ttcccgaccg
     6361 gggcgattat caacggtcgt aaagggattg aagaggctta ccgcaccggt cgtggcaagg
     6421 tgtatgtgcg cgcgaaagcc agcgtggaaa caactgataa agggcgtgag caaattgttg
     6481 taaccgaact gccataccaa gtgaataagg caaaattaat tgaaaaaatt gccgagctgg
     6541 ttaaagagaa gaaaatcgaa ggcatcagca aaattgatga ctattccgat aaaaaaggga
     6601 tttcgattgt tattgaagtc aagcgtgatg cagtgggtga agtggtgtta aaccaccttt
     6661 attctttaac ccaaatgcag gtcacgtttg gtatcaatat ggtggcgtta gataatgggc
     6721 agccaaaagt gctgaactta cgccagatca tcgaagcctt tgttaaacac cgtcgtgaag
     6781 tggtcacacg ccgtacgatt tttgaattgc gtaaagcccg tgaacgtgcc catattttag
     6841 aaggtttggc gattgcgtta gcgaatatcg acccggtaat tgaattaatt cgagcctcaa
     6901 aaaccgcaga agaagcccgt gaaggcttat tggctcgccc ttgggcatta ggcaatgttg
     6961 caccaatgtt agaggctgct ggtgttggtg cttcccgacc ggaagattta cctgaacact
     7021 taggagtgcg tgatggcgaa tactatttat ctgaagctca agccagagcg attttagagc
     7081 tacgcttaca ccgcttaacc ggtttagaac acgagaaaat cgttgaagaa tacaaagaac
     7141 tcttaactga aattggcgaa ttaatccaca ttttaaccag cccagaacgc ttaatggaag
     7201 tgatccgtga agagttagaa cgtgtaaaaa ccgattttaa tgatgaacgc cgtactgaaa
     7261 ttaccgcagc ctctggcgac atcaacattg aagacttaat cgcacaagaa gatgtggtgg
     7321 ttacgctttc tcacgccggc tatgtgaaat atcagccgtt atccgactac gaagcacaac
     7381 gccgtggcgg taaaggtaag tcggcaacca agatgaaaga agatgatttc atcgaaaaac
     7441 tcttggtggc aaacacccac gacaccattc tttgcttctc aagccgtggg cgtttatatc
     7501 aattaaaagt gtatcaatta ccgcaagcaa gccgtggggc aagaggcacg ccgattgtga
     7561 atattctgcc gttagtgaaa gaagaaaacg aacgtattac cgcgattcta ccgattccaa
     7621 acggtgaatt tagtgccgat aagtttatct ttatggcaac agctagcggt gtagtgaaaa
     7681 aagtttccct tgatgccttt agcaacgtgc gtgcaagcgg tctgattgcg ttaaaacttc
     7741 gtgaaggcga tgagctgatc ggggtagata ttactgatgg taacagcgaa attatgttgt
     7801 tctcggcaca agggcgagta gttcgctttg ccgaaacagc agttcgtgcg atgggacgta
     7861 ccgccaccgg cgtacgaggt attaaacttt ctaccaccga aatttcaagc gaagaaattg
     7921 aagaagctga aattattgaa actgacaatg aagaggcaga agattcctcc agcgtcagcc
     7981 ttgataaaga ccgtgtggtt tctttagtga ttcctcgcac cgaaggcgat attttaaccg
     8041 tcacccaaaa cggctacggt aaacgtacgg tgattagcga atatccggtg aaatcccgag
     8101 caaccaaagg ggtcgtttcg attaaagtga atgaacgaaa cggcaaagtg gttgcggcag
     8161 ttcaagtaga ggaaaccgac caaattatgt tgattaccga tgccggcacg ctggttcgca
     8221 cccgagtggc agaagtcagc ctcgttggac gaaacaccca aggcgtacgt attattcgca
     8281 ccgcagaaga cgaacaagtt gttagccttg aacgagtctg cgagcctgaa gacgatgaaa
     8341 atgaaagcct agacgcatta gaaaatgccg aaacagcaga aacatcaact gaagaataat
     8401 cttaactaaa caagcggtcg aattttcaca attttttgca aaaatagaag gaaattcgac
     8461 cgtttttgga tcatacagta gataataaaa actatggcac ttatcaatct ttccaacgcc
     8521 tatttaggct ttggcgatca tcctttattg gatcatactg aattacatat cgaacccggc
     8581 gagcgggttt gtttggtggg gcgtaacggg gcgggtaaat cgaccctgat gaaaattctg
     8641 gcgggcgaag ttcagcttga tgacggcaag ttggtatttg aaaaagacat tgtcgttaca
     8701 cgtcttgaac aagatccgcc ccgccatatt gaagaaacgg tgttcgatta tgtggcggag
     8761 gggattgccc atcttgccga cttattgaag caatatcacc acatttccct gcaaatgcag
     8821 accgattaca gcgatgaact gctcgccaaa ctttcagcgg tgcaatcgca attagaacac
     8881 gctaacggtt ggcagtttga aaaccgcatt caagacacct tgaaactgct ggaactcgcc
     8941 cccgacaaac gcctgtgcga actctcaggc ggttgggtac gccgtgcggc attggctcgg
     9001 gcgttggttg ccgatcctga tgtattgctg ttggacgaac cgaccaacca cctcgacatt
     9061 gaggcgattg cgtggctgga aaatctgtta ttggatttca aaggcagtat tatttttatc
     9121 tcgcacgacc gtgcctttat ccgcaaaatg gcgactcgga ttgtggattt agatcgaggc
     9181 aaattggttt cctacccaag caattacgat aaatacttgg aagaaaaagc cgaggatctg
     9241 cgagtagaag cgttgcaaaa tgagctgttc gacaaaaaac tcgcccaaga agaagtctgg
     9301 atccgtcaag ggattaaggc aagacgcacc cgaaacgaag ggcgtgtgcg agcgttgaaa
     9361 gcgttgcgtg aagagcgtag aaaccgccga gaggtacaag gcacggcgaa aattcagatc
     9421 gacaacaccg cacgcagcgg caaaattgtg tttgaagtgg aaaatgccgg ctatgaaatc
     9481 ggcggcagaa ccctgctgaa aaatttcagc accaccattt tgcgtggcga taaaattgcc
     9541 ctgattggag cgaacgggat cggcaaaacc acgctgatca agctgttact tggcgaaatt
     9601 cagccgacat ctggttcagt gcgttgtggc acaaaattgg aagtggcgta cttcgaccaa
     9661 taccgagtcg atcttgaccc tgaaaaaacc gtgatggaca acgtggcaga cggcaagcaa
     9721 gatgtagaag taaacggggt gaaacgccac gttcttggct atctgcaaga cttcctgttc
     9781 ccgccaaaac gggcgatgac accggtgaaa gccctctcgg gtggtgaacg caactgcttg
     9841 ttgctggcaa aactgttact caaaccgaac aacttgctga ttttggacga accgaccaac
     9901 gatttggacg tggaaaccct cgaactgctg gaagagatgc tcaccgacta tcaaggcacc
     9961 ctgattattg tgagccacga ccgtcaattt gtggataata ccgtaaccga atgctacttc
    10021 ttcgagggcg aaggcgtggt gaataaatat gtcggcggct atttcgatgc caaacaacag
    10081 caggaaaatt acttcgccgc cactgccgac aagcggttaa attcgagtaa aaatttgcaa
    10141 aaaatagagg aaaaagcacc gcttgcggag caagagaaac agaaagccga tcaggaaaaa
    10201 acgaaagcag agccgacgaa gaaaaccaaa ctttcctaca aagaacagcg tgaactggac
    10261 gagttaccgg ctaaaatgga acagcttgaa gccgacattg aagccctgca agccgaagta
    10321 aatagtgccg aattcttcgc caaagatcca agctacacca acgcccagct acaaaaactt
    10381 gccgataccg aagccgcgtt agagcaagcc tttgagcggt gggaagcgtt ggaaaatatt
    10441 aaaaacggga atatctaatg taggggcgaa tgattattcg cccttgatgg ataaaatgat
    10501 tgggcgaaaa atttttcgcc cctacaaatg tgaagcaaaa tgacagaaag attagataac
    10561 tacgaacaac gttttggtgg cattggtcgc ctttatacgc cggaaggatt ggagaaacta
    10621 cgccgttcgc atatttgcgt gattgggatt ggcggggttg gctcgtgggc agtggaggca
    10681 ttggctcgct caggtatcgg taagatcacg atgatcgata tggacgatat ttgcgtgacc
    10741 aatatcaacc gccaaattca cgcaatgagt ggcacggtgg ctcaactgaa aaccgaagcg
    10801 atgaaagagc ggattgagcg gatcaaccct gaatgtgtgg tggaaattat tgatgatttc
    10861 ttaacgcagg ataatctcgc agactacctc aatcgaggat atgactatgt gatcgatgcg
    10921 attgacagtt tgcgggtaaa agcggcgatg attgcgtttt gtaaacgcaa taagatcaaa
    10981 attatcacca ccggcggggc gggcgggcag accgatccga ccaaaattca aattaccgat
    11041 ttaagcaaaa cggtgcaaga tccgttggcg gcaagggttc gtagcctgtt gcgtaaagag
    11101 tacggtttca gcaataaaaa caaattcggc gtggagtgcg tttcttcgac tcagcaactg
    11161 attttcccac aaatgggtga ggcctgtgag gtgtcggcaa caatgaactg tgccaacggc
    11221 tttggagcgg tgacaatggt gacggcaacg ttcggctttt ttgcggtgag tcgggtgatt
    11281 gataaactat taaaataaca agcggtcata ttaaatgaat tttttgcaaa tcaaggagta
    11341 aataatggca atacatcgag tcaacccgaa agggagtatg gaacagcttt cccatttgga
    11401 aatggagttg ttggcaaaga atacgcaggg taatttgcat caactttatc gtaattgctc
    11461 tttggcggtg ctaaattccg gtgtgcatac cgatgacagc cgagcgttgt taagccaata
    11521 ccctgatttt gaaatccgct tattaacccg tgaaaaaggc gtgtcgcttg aattgcataa
    11581 tccacccgaa actgcgtttg ttgacggcaa gatgattttg aatattcaat atcacctttt
    11641 tgcggtgctg cgggatattg tgtttgtgaa tgcgttaaaa aatgcgatta gaccgcttga
    11701 agagacttct ttagaagcct taaccacgaa taccgtattt tcgattttgc ggaatgcgaa
    11761 agcgattgaa atgaataccg acccaaattt ggtggtgtgc tggggagggc attcgattaa
    11821 tgaaaccgaa taccaatatt gccgtgccgt cgggcaagag tttggcttgc gtgagctgaa
    11881 tattgtgacc ggttgcggag ccggtgtgat ggaagccccg atgaaaggag cggctatcgg
    11941 acacgccaat caacgttata aaaacgggcg ttttatcggc attaccgagc cgtctattat
    12001 tgcctccgag ccgccaaacc cgattgtgaa tgaattggta attatgccgg atattgaaaa
    12061 acggttggaa gcctttgtgc gtttagggca cgccattgtg gttttcccgg gcgggccggg
    12121 aacgctggaa gagttgctgt atattatcgg tattaagtta aacccggcta accatgctca
    12181 gcaattacca ctgattttaa ccgccccgaa agaatcggca gactatttct atgccatcga
    12241 tcaatttatt ggcgaaactt taggcgaaga agctcgcagt ttgtatgaaa ttattattga
    12301 tgactcggtg ttggtggctc gtaaagtcaa gcaagcgatg attgaggtaa aaagcagccg
    12361 ttatgaaagt ggcgatgctt ataatttcaa ctggtcgtta aaaattgagg aagattttat
    12421 tacgccattt attccaaccc acgaaaatat ggcaaacctg aatttaagtt tagcacagcc
    12481 aaaagagcag ctggctgcga atttaagacg ggcattttca gggattgttg caggtaatat
    12541 taagccggag acctccgatt taattgagaa atatggggtg tttaaattac acggcgatcg
    12601 taaattaatg gagcatatag ataaactgtt ggagcgtttt gtggttcaac accgtatgaa
    12661 aattccaacg ggtgaggcgt accaaccttg ctatgaaatt gtaaaagggt aatgctaaca
    12721 aggggtaagg tatgtattta aagcatattg aaatcagtgg ctttcgtggt attaaccatt
    12781 tatcgctcca gctacgacca aatatggtat tgattggcga aaatgcgtgg gggaaatcca
    12841 gtctgattga tgcattaagc ctgattttta accttgagca ggcgttgtat caatttcagt
    12901 tcaaagattt ccatattcaa tacaccgata cccccaacca agtgcgggac attcaactgg
    12961 tgtttacctt ttgtgaagag catcagcacg atttagcggt gcaatttccc gcttatttgg
    13021 cacaagccgc gttttatatt gataatcacc gctgtgtttc gcttgccgta accggaaaat
    13081 tacacggaga gcagattagc accgactatc aatttgtgga tcaaagccta aaaccgatcc
    13141 agatagaaca agcggaaaac gccattcggc agtttattta ccatcaccct gtttatcgcc
    13201 tgcgtgatgc aaggctcaat aacagggtgc ataatgaatt attacttaaa ggatcgtctc
    13261 aacttgaaga cgattttcaa cgtgaattaa acgccctctc ttcgctactg aaatactatt
    13321 ttctaaccag ccaaagtcgc tatttgatca aaaccagtat gcaagacacc gcattgtggt
    13381 gggaaaaagt aaaatccctc tgtttacgcc taaaacagca gccggaattg gtcgaatctg
    13441 ctcagcagca tatttctact ctatttttgt ttaatcctag atctacagta atagaaaagc
    13501 cgattatttt atttgaagat ctgaatgctc aactacaccc tcgaatgatt gcgatttttt
    13561 gggaactgct cggtttttta cccagccaac ggatcaccac tactaattct attgaattgt
    13621 tatcgcaagt gcctctgcgt gaaatctgcc gtttggtgcg tcatcacgat catacccaag
    13681 cctattggct tgaacgccac agtttaggca aggaagattt gcgaaaatta acctttcata
    13741 ttcaccataa tcgtggcttg gcactgtttg ctaaagcgtg gattttggtt gagggggaaa
    13801 cggaggtttg gattttgcaa gagctggcga gattattaga tattcatttg gaaatggaag
    13861 ggatcaaaat cgttgaattt gctcagtgtg gcttacgtcc gttaattaaa tacgccagag
    13921 caatggggat cgaatggtat gtgctgactg acggtgacga ttccggcaaa cgttatgcag
    13981 atacggtaaa aagtatggaa gaggattttg ctcaccggct cacgatgttg ccacaaaaag
    14041 atatcgaaca ttttttctac aaagcaggct tgcggaatgt gtttatacag cttgcaaatt
    14101 ggcgttcaca agaaaaatat ccggtgtcct acatcattaa acgagcgatt caacgaagct
    14161 caaagcctga tttagccatt gcattagcca atgagatggg gcaacgggga gagcattcaa
    14221 ttccaacttt atttaaacaa ttatttgcag atgtgctggc attgataaac aaagtataga
    14281 atacaagcgg ttaaatttga caaaaaattg ccaattttga ccgcttgttt gcttgtgatg
    14341 aaaaccaatc atacaaaact ctaatttatt tcaagtgcaa gctattattt tatgcgttat
    14401 gcttatttgg aataaaaaaa tcgggttagt tgattgacat agcattctag acgtctaaaa
    14461 taaccaaaaa taatagttaa ttgaatgtgg ataaatagaa aatgattcag ctgaaaaata
    14521 tcagcaaaca atttgaggta aagggcaaaa aaattaccgc tctggataat gtaaacctag
    14581 aagtaccaag aggcactatt tatggtgtca ttggggcatc aggggcagga aaaagtacct
    14641 taattcgctg tgtaaattta ttagaacgcc caacaatcgg gcaagtgatt gtcgatgggc
    14701 aagatttaac ggcaatgtcg gataaagagt tgattcacgc tcgccgtaat attgcaatga
    14761 ttttccaaca ttttaatttg ctttcatcac aaactgtatt tgaaaacgtg gcgttatcgt
    14821 tgcgtttaag caatacgcca aaagagcaag ttgagaagaa agtcaatgag ctgttggatt
    14881 tagtggggtt aacagatcgt aaagatgttt accctgcaaa tctttccggt gggcagaaac
    14941 agcgtgtagc gattgctcgt gcgttagcca gcgatccaca cgttttgttg tgtgatgaag
    15001 cgaccagtgc gttagatccg gcgactacgc aatccatttt gcagctatta aaagatatta
    15061 ataaacgtct tggtttgacg attttattaa tcactcacga aatggaagtg gtaaaacgca
    15121 tttgtgaccg agtagcagtg attgataaag ggcagttgat tgaatctggc tcggtaagtg
    15181 aaattttctc gaatccgaaa accgaattag ctcagaaatt tattcaatcg actttccatt
    15241 ttgaattacc gcaagaatat accgagcagc tttcaagttc gccgactgaa catagtaagc
    15301 cgattattaa atttgagttt accggacgtt cggtggatgc acctttgctt tcaatggcat
    15361 cgaagaaatt cggcattgat tttagtattt tgatgtcgca aattgattat gcaggcgggg
    15421 tcaaatttgg atttgtaatt gcagaagtga gtggtaatcc ggattccatt gcagaggcaa
    15481 aattttattt aattgataac aatgtaaaag tagaggtgtt aggctatgtg ggctgatttt
    15541 atgcaggaga tgacgccaca gatgtggagc ttagtatggg aatctacttt tgaaaccgtt
    15601 tatatgggct ttgtggcaac ggcattggcg gtagtcatcg gtttaccgat tggtttcttg
    15661 gcgtttttaa ccggtaaagg cgaaatttta gaaaatccga gattacacca agtgttagat
    15721 gtcgttatta acatcgggcg ttcgattccg ttcattattt tattgattat tttgttgcca
    15781 tttactcgct tagttgtggg cacaacatta ggcacaacgg cagcgattgt tcctttaagt
    15841 gtttcggcca ttccgttttt tgcccgttta acttcaaatg cgttgcttga aattccgtcc
    15901 ggtttaacag aagcggcaaa atcaatggga gcaacaaatt ggcaggtagt gacaaaattt
    15961 tatttaccgg agtcattacc gattttgatt aatggcatta cgctaacgct ggttgcttta
    16021 attggctact cagcaatggc gggggctgtt ggtggcggcg gtttaggcaa tttagcgatt
    16081 agctatggcg aacaccgtaa tatggtgtat gtgaaatgga ttgctaccat tattattgtt
    16141 gcgattgtga tgattagcca aaaattgggt gatcatttag caaaacgtta cgatcatcgt
    16201 taattttatt taaaaagagg tttctatgag tttcaagaaa attttaggcg ttgcattggt
    16261 ttctgcatta gcattaaccg cttgtaaaga agagaaaaag gcagaatcta ccgctgctcc
    16321 ggcagctcaa gctccggcta aaatcaaagt aggggtaatg tcaggccctg agcataccgt
    16381 tgcagaacgt gcagcacaga ttgcaaaaga aaaatatggt ttagaagttg agttcgtttt
    16441 atttaacgac tacgctttac cgaatactgc agtaagtaaa ggtgatttag atgcaaacgc
    16501 attccaacac aaaccatatt tagataaaga cagccaatca aaaggtttaa acaacttagt
    16561 gattgtgggt aacacctttg tttatccgtt agcgggctac tctaaaaaag tgaaaaatgt
    16621 gtctgagtta gcagaaggtg cggtaattgc agtaccaaat gatccttcaa acttagctcg
    16681 tgctttgatt ttattagaaa aacaggggtt aattaaatta aaagataata ccaatttatt
    16741 ctcaacttca gtggatatta tcgaaaatcc gaaaaactta aaaattaaag aagtggatac
    16801 ttcaattgcc gcaaaagcgt tagatgacgt agatttagcg gtggtaaata acacttatgc
    16861 cgggcaggta ggcttaaata cccaagatca cggtgtattt gttgagtcta aagattcacc
    16921 gtatgtgaat attattgtgg ctcgccaaga caataaagat gcagctaatg tacaaaactt
    16981 tattaaatct taccaaaccg aagaagtgta ccaagaagca caaaaacact ttaaagatgg
    17041 tgtagtaaaa ggttggtaat ttagctgatt tttacttaaa tggcgattaa gcgctaggtt
    17101 aatcgccatt ttcatcttta aaatatagga aggagcaaac aatgaacttt aaaaaattat
    17161 taggtgtggc gttagtatct gccttagcac ttactgcgtg taaagatgaa aaagcacaag
    17221 cacctgctac aacagctaaa actgaaaaca aagccccatt aaaagtgggt gtgatgaccg
    17281 gccctgaagc ccaaatgacc gaagtggcag tgaaaattgc aaaagagaaa tatggcttag
    17341 atgtagagtt agtgcagttt actgaataca ctcaaccaaa tgccgcactt cattctaaag
    17401 atttagatgc taacgcgttc caaacggtgc cttatttaga gcaagaagtg aaagatcgtg
    17461 gttataaatt agcgattatc ggcaatacgc tagtatggcc aatcgcggct tattctaaaa
    17521 aaattaaaaa catttccgag ttaaaagacg gagcgactgt tgcgattcca aacaatgcaa
    17581 gtaatactgc tcgtgcgtta ttattgcttc aagctcacgg tttattgaaa ttaaaagatc
    17641 cgaaaaatgt gtttgctacc gaaaacgata ttatcgaaaa cccgaaaaat atcaaaatcg
    17701 tacaggcgga tacctcactt ttaacccgta tgttagatga tgtagaactt gcggtaatca
    17761 acaacactta cgcaggtcaa gctgggttaa gtccggataa agacggtatt attgtggaat
    17821 ctaaagattc accgtatgtg aatttagtgg taagtcgtga agataataaa gatgacccac
    17881 gcttacaaac ttttgtgaag tcattccaaa ccgaagaagt attccaagaa gcgttaaaat
    17941 tatttaacgg tggtgtggtg aaaggttggt aatcagttgg acggcatatt ctgccgtcct
    18001 tttcttaaaa ggagaaacag ataatgaaaa taatgaaatt agccggtgca gttgcaattt
    18061 tctcgctttt tttaaccgct tgtaatgata aagccgaaaa gttgaaagtc ggtgtgattt
    18121 ccggccctga acataaggta atggaagtgg cggcaaaaat tgcaaaggaa aaatataacc
    18181 gtgatgttga attagtggta tttaccgatt atgccacgcc taatgcagct ttagataaag
    18241 gcgatcttga tttgaatgct ttccagcata aaccttattt agataaccaa attcaggaaa
    18301 aaggctataa attagtgccg gtcggcaata cttttgttta tccgattgcg gcttattcca
    18361 aaaaaattaa atcgctggca gagttgaaag atggtgatac tattgcagtg cctaatgatc
    18421 cgactaattt agcccgtgct ttaattttat tggaaaaaca agatttaatt aagctgcgag
    18481 cagatgcagg cttaaaagca accagtgtgg atattattga aaaccctcgt aaattggtga
    18541 tccaagaaat tgaagcacca ttattgcctc gaacgttgga cgatgttgcc ttttcgatta
    18601 ttaatactac ctacgcaggg caaaacggtt taacgccaac caaagacgga atattcgttg
    18661 aagacaagga ttcgccttat gtgaatttaa ttgttgcccg tgaaaataac caacattctg
    18721 aagccgtaaa agatttggtg aaagcctacc aaacagaaga ggtgtataac aaagcgaatg
    18781 aagagtttaa aggggcgatg ataaaaggct ggtaattgaa gataaataag gcatagattc
    18841 ctatgcctta ctttttatgt tacagacctg ctccggctct taatgcttcg gctttgtcag
    18901 ttttttccca aggaaaatgt ttacgaccga agtgtccgta ggcagcggtt tcacggtaga
    18961 ttggtttgat taaatctaac attttgatta agccatacgg gcgtaagtca aagttttggt
    19021 agattaattt cacaagtatt tcgttgctca ctttacctgt gccgaaggtt tcgaccataa
    19081 ttgatgttgg gtcagccacc ccgatagcat aagaaagttg gatctcacag cgatcggcta
    19141 agcctgcggc aacgatattt tttgcgacat aacgagcagc ataagcagca gagcgatcca
    19201 cttttgacgg gtctttacca gagaatgcac caccaccgtg gcgagccgca ccaccgtagg
    19261 tatctacaat gattttacgc ccggttaaac cacagtcacc cattggaccg ccaatcacaa
    19321 aacgaccggt tgggttgatg aaatatttgg tgttttggct gagccattcg cttggtagta
    19381 ccggtttgat gatctcttcc atcacccctt caattaactc tttttgcgaa atatgctctg
    19441 cgtgttgtgt agaaagcact acggcatcaa tgccgataat tttattgttc tcataagcaa
    19501 atgttaattg gcttttagcg tcagggcgta accaatcgag tttgcccgat ttacgcactt
    19561 ttgactgctg ttccattaag cggtgtgcgt aagtaattgg agccggcatt aacacctcgg
    19621 tttcattggt agcgtagcca aacataatcc cttggtcgcc cgcaccttgc tctaacggat
    19681 cggcacggtc aacgccctgg ttgatgtccg gagattgttt accaatcgca tttaataccg
    19741 cacaagagtg agcatcaaag cccatatcag agtgagtata gccgatgtcg caaatcactt
    19801 ggcgggttaa gttttcaata tccacccacg cagaggtagt gatttctccc cctactaatg
    19861 ccataccggt tttcacataa gtttcacaag caacgcgtgc tttagggtct tgttttaaaa
    19921 tttcatctaa taccgcgtct gaaatttggt ctgcgatttt atccggatgc ccttctgaaa
    19981 ccgattcaga agtaaataaa ttaattgcca tttgtattcc tctctatctt aaatatggat
    20041 tattaatagt aggggcgggt ccagtgcccg cccataaatt atataaaatg tttggacagg
    20101 cacaggaccg gtccctataa aatttgtttg gaagtgtttc cgtctagacg tctataatat
    20161 attttttgaa cgttttaggc aaatagaatt tgtttatttg gctaaatatg cccttaaacc
    20221 agccaacgca tttttggcat cttctacccc taaatcgtac attgcttgta ttttatttac
    20281 atccgtttca aggcgactga ttttgactgt tctgcttgga cgaatcacaa aaatctgttg
    20341 tttttcattg agttgaataa tctgctcaac ggcttgatta tattccgcat agcggttttc
    20401 ccagcgttgc actaatttcg gatatttttt ataaaaacgt ttaaacagcc acatcgagct
    20461 tggtttctta cggtattcaa gtgggcgagt aagcaccacg ataattttgt catatcccat
    20521 ttcaataaat ttctgcaccg gaatactgtc tgacacacca ccgtctaaat attttttacc
    20581 ctcaatttcg actattttgg atacaatcgg cattgaggaa gtagctcgaa aggcttccat
    20641 ttgctcgaac acattgtcaa ttttgatgta ttcgggctca ccggtttcga cattggttac
    20701 agtaacccaa aagtccatac cggaatcctc aaaggcttgt tggtcaaacg gatccagttt
    20761 ggaagggagt tcatagtaag caaaatcccg attaacgata ttgccggtgg taagcaagct
    20821 gtgtaacccc atataccgct tatctttagc gtattttttg ttgtatcgca acgccctacc
    20881 tttttgtttt gaaggcaaat tcacgccaaa taacgcaccg gctgaaacac cgattgctcc
    20941 atctatatga atatgttcat ctaaaaatac atctaacacg ccggcagtaa aaatacctcg
    21001 caaaccaccg ccttccagca ctaatccaac tttcatatca ttctccctgt aatttgtgta
    21061 ttataacccg aattatcttg ctaggagaaa tcacaatggc tgatgcagaa tttatggatt
    21121 tcctgttaga tcaactaagc ccgatttccg gtttgcgttc gaaaaaaatg tttggtgaat
    21181 attgcttgtt ttttgataat aaaattgtcg ctattatcag caaagattat cgcatttttg
    21241 tcaaagctaa tccgcaaacc ttgccgttat tcttagctga aaatgccgaa caatttcact
    21301 attttgctaa aggaaaagtg caaaaaatgc actactggag cattccggaa ttagcgattg
    21361 aagaagccga tgaactggtc aaatggattc ggctaggctt acaagcggtg taatttagcg
    21421 aaaattttgt aaaaaaacgc taaaatatgc ccgcttgtta ggggggggga cctaatattt
    21481 ctatacttta agattttata tttatgaacc aaaaaaaatt agtttctttg attgtcgtta
    21541 ttgtgttggc aatcatttct caaattttta gcttttttga taaaaaagag ccttcaaaag
    21601 cacaagaaaa atcgacccag agtagtcagt ctcatcaagt ttcaacttca tcactaggga
    21661 actatgatgt gcagatgaaa aacgaccgtt tgaaacagca tattgtagat accgattatt
    21721 acaccttagc gttgtcgtgg tcgccggcgt tttgccaaaa acaaaagcga aataatcacg
    21781 gtaaaattcc gtctcatttg gaatatcaat gtggtggctc agcggatttt ggttgggtta
    21841 ttcacggctt atggccgcaa agtggcaagg caagaagtgt tgatgaacac cctcgttatt
    21901 gccaaggcga tttgccgatg gtggcagagc agacgattaa gcaatattta cctgaatcgc
    21961 cgggggcaac tttgttgcaa ggcgaatggg aaaaacacgg tgcttgtgcc tttaaccaag
    22021 cggatgatta cttcgccaaa caaaaagagc tatttaatca gctcaaatta ccggataccg
    22081 aaatgtctaa attagcactg tttaactgga tgcgagccaa taaccctcat ttgcaaaatg
    22141 tctatttagg gggtagcaaa gatgagctgt atatttgcta tgataaagca tttcaaccaa
    22201 tggattgccc acgctaatgg cagatcttcg ccaactgaaa atgcaggttc agcgccaatt
    22261 aaagcgtgat cttgaacgtg caaatcacta ttttaatacc acttttacgc caccaagtat
    22321 tagctatgcg gtgcgtggcg taaaagccgg tgtggcttat cttgaacgca acgaagtacg
    22381 gtttaatcct gtgttattgc aagaaaatga acaggcattt atccgccaag ttgtgccgca
    22441 cgaactggct catatcttgg tttatcaaca ttttgggcgg gtacaatctc atggtaaaga
    22501 gtggaaaatg atgatggaaa ccgtactggg tgtgccggcg gaaatttacc attgttttga
    22561 tacccaaagt gtgcaacagc aatttagtta ccaatgtgcc tgccagactc accagctttc
    22621 gattcgccga cacaatgccg tgatgcgaga taaaaaaagc tatatttgcc gtttatgtaa
    22681 aactcaactc cattttgtag aaaaaagtta atgtggagaa aagttaagag aatgttacga
    22741 tttagctaga cattcctgtt taaacgccta caatttgccg tagtttttat ttttaatttt
    22801 atttccggag tatttatgga aacaattgta attgtaggtg gcggtgcagg cggtttggag
    22861 cttgcaacct atctaggcaa caaattaggg cgtaaacaaa aggcaaaagt ggtgctgatt
    22921 gaccgcaatg caacgcattt atggaaacca ctgttgcacg aggtggcaac cggtactatt
    22981 gatgagggaa ctgatgcgtt aagctatcgg gctcacgcta aaaatcatag ttttgaattt
    23041 cagcaaggta cgctggtggc ggtagataga gagaagaaaa cggtttcact cgccccgatt
    23101 tataatgatc aaaaccaact tctcgttaaa gaacgccata tcagttatga caaattagtg
    23161 atcgcgatcg gcagtaaatc caatgatttt ggcaccaaag gggttgcaga aaattgcatt
    23221 ttcttagatg gctcagagca agcaaaagat ttccaaaaac gaatgatgga gctgttttta
    23281 cgtttttcac atagtgaaaa taaagatgta aaaattgcga ttgtgggggg gggagcaaca
    23341 ggtattgagc tttcagcgga gctttaccac gtggtgaaaa atttaaattc ttacggcttt
    23401 ggtaaattaa accgtgccag cttgaaagtc actttaattg aggcaggccc tcgtttgatt
    23461 ccggcattac cggagaaagt gtcggtttct gctttccacg aattgaaaaa agcgggtgtt
    23521 tcggtgcgtt taggtacgat gattaccgaa gctcgtccag atgggctaat gacccgttta
    23581 ggtgagaaaa ttgaggcgga tattatggtt tgggcggctg gcgtgaaagc ccctgaaatt
    23641 acccgtgaat ttggttttga aactaaccgc ttgaaccaaa ttgagattaa agacacgcta
    23701 caaaccaccg ttgatgagtc agtgtttgtc attggcgatt gtgcatcatt aattcaagat
    23761 ggcaagccaa ttccacccag agcacaagca gcccaccaaa tggcaacccg atgtggtaaa
    23821 aatattgtgg cattgataga aggaaaagag atgaagccgt ttcgatttaa cgataaaggc
    23881 tcactgcttt ccttctcaaa attcggcacg gtgggtaatt taatggggaa tttagtgagc
    23941 ggtgatatgt ttattgaagg taaaattgcc cgcttggctt acctctcgct ttatcgaatg
    24001 caccaagtgg cattacacgg ctgtgtcaaa accggcttga ttgtgttggt agggcaaatt
    24061 aaccgtttct taagaccaac aatgaaacta cattaaacaa aaatccgcat caaatgatgc
    24121 ggatttttta tggcaaaata acaagcggtt attttcttgc ctatttttgc aaatactcac
    24181 gcctagtttg ctaatttaat ttccgccaac catttatcaa ttaagcgttt gccctcttcg
    24241 ctggaacctg ctttttggta atcaatttcc acaaagtcta acgcttcggc tttggttgat
    24301 tgtggagcaa cttcggcgtt gatgtttgtt ggggtttggt aaacaccgtg ttttttccaa
    24361 ggaatttcct gtgcttcttt tgaaagcacc caatccataa agagtttggc gttatctaaa
    24421 ttacgggcat ttttgataat gctgacaccg cctaacgcat agcccacttt accttccgga
    24481 ataatggctt caataggcgc acctttttct ttttcagtgg cataactatg tacaaagcct
    24541 accgtaaccg cactttcacc acgagcaaga ttgctggtga ctagggtgct tttcacatat
    24601 tgcgaaacgt tattgttgag ttttttcaga taatcaaagg ttttctcttc gccccataag
    24661 gttgaaagag tggtcataaa cgtataagtc gtgccggagc tacgaggatc aggcagttgt
    24721 acttcacctt ttaagcgagg atctgataaa tcttcccatt ttttcggtgc ctcaatgcct
    24781 agtttggcga gtttttcggt attcacgcct aaccctaata caagcatata aacgatagag
    24841 gtaaatttac cttgttcact ttcaactaag gatttaaatt gtggcagaat ttcagcttgt
    24901 tttggtgaac ggtaggcttc cagtaagcct aattcgcctg cttgaaagtg aggttcaatc
    24961 gtgccgccat accaaatatc tgcctgaggg ttcgatgctt ccgcttttac ttttccgaaa
    25021 attgtaccgg ttccgccgtg aatgaattta gtttcgacat tatatttgtg tgaaaattgc
    25081 ttggtcattt cttcacaaac attattttgt accgagcaat aaacagttaa acgaccttct
    25141 gcttgtgctg cttgagctga taagaaaatg ccagaggcga ttaagatcga ttttaatgag
    25201 attaatttga gtacgttcat cactttcctg aaaacataaa ataaaaggta gtgaagtcta
    25261 gcatttcaaa gcgctggttg aaaatagtta attgcaatga agtagggcaa ttgtgcctat
    25321 tactttaata tttaccaact atttgcaagt tttagcaaaa aataaccgct tgtagtagct
    25381 cttgctattt tgtcaaaatt cagaataata aatgccttta gtctaatgtt aaattttagt
    25441 tatggaaaat agttggaaat atgcttttaa attaatcacg ccgattttta tgggctattt
    25501 tgcggcaggg gttgcttacg gaatgcttgc caccaatgcc ggaatgcctg cgtggtttac
    25561 gattgtaatg agttttaccg tggtatcggg gacggcacaa tatgcagcga ttccattttt
    25621 tgtctccggt gttggggcgg tgtcggtctt tctcagtacg cttttaatga gtctacgttt
    25681 tagtttttac accttaaata tgatggagca taagccgata tccaaagcga aaagtctggt
    25741 cgctattgca ggtttaactg atgaaggctt tgcggtgtta tcttcattac cgaaagagca
    25801 aaagcaagca ttattcttta aaatcgctgt gctatgtgtg gcttattgga cattttccac
    25861 gattgtcggt gtgttgttag gcgattcagt ggcgaactat attccgcatt tggattttgc
    25921 tctgccttgt ttgtttgcaa ttttagccta tgagcaatac aaaaaccaaa aacaatggaa
    25981 accgattgtg attgcgttaa tcggattttt acttgctcgt cagattaccg aaaccagcgt
    26041 gttattggtg gcaattttag tagcgattgt cattgtggct ttattacctc aatcttcttc
    26101 aatcaaacta gagaaaggag tagaaaatga gcacaaatga tactttgata atgtttgcag
    26161 cattagtgct cggctcgcaa atttgtcgtt ttttgccgga atttttaccg aaaaaggtgt
    26221 tatcttcgcc cattttgcaa aaattaaaca aaatgttacc gcttgtgatt atgcttttat
    26281 tgcttttaac gagcctaaac tttcctaaaa acggggaagg ctttaactta atattggcac
    26341 aaattctggc tttaataggc gtattaggta gctatgtttg gcttaaaaat acctttttaa
    26401 gcgtagcgtt ggggattttc ggtgtgaatg tatttttatc cctgctagga taaataccaa
    26461 aggtcatttt ataggagcga aacaccttcg ctcaatcatt aacagatgtg gggcgaaaaa
    26521 tttttcgccc cttatttatc acaagcggtc tttttctttc aattttttgc aaattaaatc
    26581 gctaaatcaa acgcatagaa ggcaactaaa ataatcgcaa taattactgt acctaggttt
    26641 aatttattgg cttcgcctga aattaagcga ccaatcacaa gggtggcgaa acctagcata
    26701 atgcctgtca caatgttggc ggttaatacg atgaacaccg cacagactaa acctgacatt
    26761 gcacctacaa aatcgctgaa atctaattta gagacattac ttagcattaa taagcccaca
    26821 tacattaatg ccggtgcggt ggcatagctt ggtactaaga atgcaagagg ttggaagaac
    26881 agcataaata agaaaccgat accaaccact acagcggtta aacctgtttt accgccaacg
    26941 gctgtacctg ctgccgattc aatatacact gccgctggtg ctgtaccaaa taagcccgat
    27001 aaaattgatc cgaatgagtc agaagttagg gctttatcgc cattgataat ttgtccgtct
    27061 ttatctaata aaccggcttg ccctgcaacc gcacggatag tacctgttgc atcaaaaata
    27121 gcggtcatta ctaacgcaaa cactaccggt aaaatggcgg tatttaatgc tcccataata
    27181 tcaagattta ggaattgcga attttcacca aaactcggca ttttgaaaaa gcctgtgtat
    27241 tttacgttag ggtcaaaaat taaacctacg atggtaatag caataatgac ccataaaata
    27301 ctgcctttta ctttcagctt ttctaacccg ataatggcgg ctagaccgat taatgacact
    27361 aaaaccggaa atgaagtgaa gtcccctaat ttaaccggaa tatccatacc gctattgacc
    27421 actaatttaa cgttagtggc ggcaataatc agtaagaata aaccaatacc aattccagca
    27481 ccgtgggcaa tgctgcttgg caaattacgt aaaatccaag tacgaatacc ggtagcagaa
    27541 atcaaggtaa atactacgcc cattaagaaa atcgccccga gtgcaacagg aatagaaact
    27601 tgttgcccta atactaagct aaaggcagta aaagcagtaa gtgaaatcgc acaaccgatt
    27661 gccattgggg catttgccca taaaccgatt aagatagagc cgagacctga aactaaacag
    27721 gtggcaataa ataccgattc ggcaggaaag cctgcttggc ttagcattcc cggcacaacg
    27781 atgacggaat aaaccatggc taaaaaggta gttaaaccgg cgatgatttc ttgacgagcg
    27841 tttgaaccac gctcctcaaa tttaaataac gacataagaa cctcaaaaga agaaaatgaa
    27901 aggggaaatt ttaggatgcg gaattttaca gaaatttaaa ataattagca aacgtttgcg
    27961 taaaaagtga aagaaaagca ggaataaatc ctgcttttgt ttgatggtta gtaatcgatg
    28021 aaagcgtctt gatctgcccc ttccttttca actttaggct gaaccatatg ttcacgtttt
    28081 agcccaagtt gtagtgccac accaattgca atgtagatgg atgaataagt accgaaaccg
    28141 ataccgatca ataatgcaag tgagaaacta tgaagcgttg gaccacctag atagaataag
    28201 gctagtacca caaagagggt ggttactgat gtcattaaag tacgcgaaag tgtttggctc
    28261 aaggaaatat cgataatttc aattgagctg gagcgacgaa ctttagaaaa gttttcacgt
    28321 acacggtcaa acaccacaat tgagtcattt aacgagtaac cgacaacaga taaaatcgct
    28381 gctacaaagg tcaagtcaat ttcaatctgt aagaaagaga agattccgat cgtcactaat
    28441 acatcgtgaa ataaagccac aataccgcct accgctaaac gccactcaaa acgtgttccc
    28501 acgtaaataa gtagcatagc aagtgttgcc aaagtggcat aaatagcccc ttgggttagc
    28561 tcttccccca cgtttgggcc aacgaattca atgctcttga tagtcgcatt cggatctaat
    28621 ttttgatgga tcatctccat cactttattc ccaacagaca tatcaccggc actggcggca
    28681 agtcggatca ttaaatcttt ttgactgcct gtggtttgca ctaaggcatt gccgtagccg
    28741 ctattttcaa gctccgtacg cagttttgct aaatcagcag gttgtgaaaa ttgagtttcg
    28801 attactgtcc cgccggtaaa atctaacccc cagttaaagc cttttgtcgc aatagtaaaa
    28861 atgcataaag cagttacaat cagcgaaaaa atgaatccga catagcggta tttcataaag
    28921 gggattaatt tataaggcag tttaatttct gctacatctt gttgtacatt ttcaatagcc
    28981 atttttccac cttaaatcca aagtttcttc acgcgtttgc caccgtaaac ccagtttaca
    29041 agcattcgag tacctgtaat tgcggtaaac atagaaataa ttacccctaa tgcaagcgtt
    29101 accgcaaagc cttttaccgg acctgtacct acaccataaa gcacaagaga agtcaaaata
    29161 gtggtgaggt tggagtcaaa aatacttgag aatgcgccat tataaccttc gtggattgct
    29221 tgttgaattg ggcgaccgtt acgaatctct tctttgatcc gctcgtagat tagtacgttg
    29281 gcatcaactg acatacccac agcaagtacg ataccggcaa ttcccggcat agtaagggtt
    29341 gcaccgatta atgacattaa accaatcgtt aagatcatat tcacaatcaa ggcaagagag
    29401 gcaaatatac caaatacttt ataaaaggct agacagaaca ggatcgttaa gcctaagcct
    29461 aaaatactag cttccatacc ttgtttaaca ttatctgccc caagagaagc accgatagta
    29521 cgctcttcca caatcacgat tggagcaatc aacgcacctg aacgtaataa taccgcaagg
    29581 ttttgagctt ccgctggtga attaatccct gtaatctgga attgattacc taaacgggtt
    29641 tgaatggttg caacgttaat tacctcttgg tgtttttcta aaatgacttt accgttagca
    29701 tctttacgac ctgaatcttt aaattcggta taaagtgttg ccatcggttt ttggattgcc
    29761 attttagtaa tttcacccat catctcgccg ccttcggtat cgagtcggat actcacttgc
    29821 ggcaagccac gctcatcagt gcctgaggtt gcatcaataa tatgttcacc ccctaacgaa
    29881 ggtttacggc gtaatacaac tggctcgcca tcacgggtgt tttgcagtcc tgaatcagcc
    29941 ggcacaatgc ctttcgccgc agaggccaca ttggcttcgg tattgactaa ccggaactca
    30001 agggttgcag ttgcccctaa aagctctttg gcacgagcgg tatcttgcac acccggtaat
    30061 tcaactacga tacgatctgc accttgacgc tgaatggtcg gctcagaaac gcccaattcc
    30121 tcaacacgtt tacgcaaaat agaaaggttt tgttcgattg ccatcgtgcg agattcagaa
    30181 agagcttgtg ctgatggcgt taaggtgact ttattatcat ttaccaaaat atcaagcgtt
    30241 gggtgagaga gacgcactaa acgcactgct ttttcggcgg tatcgttatc ggcaaattca
    30301 acctcagttg caaaattttc gccttttttg accgcttgat attgcaattt ttctttacgg
    30361 aaatcactac gcaggctgtc ttgcaaagtg tcttgttgtt ttgcaagcgc cgtgttcata
    30421 tccacttcca ttaagaaacg aacaccgcca agcaagtcca agcctcgctt catcgggcta
    30481 ccgccaatgt cagacaacca ctgtggcgtt gctggtgcaa ggtttaaggc aacagagtag
    30541 ttattcccca atgcttctga gattttttct ttggcaggca attgctgttc gctgctttcg
    30601 agacgaacca aaatcgagcc attttctaac acggcagatt tcggctgaat attcattgct
    30661 gaaagtgtgg attgcacttg agacagtgtc tcaggtgtgg cttgttgccc acgagtaccg
    30721 gaaatttgta ccgaaggatc atcgccatat aaatttggaa gggcatataa agcaccaatg
    30781 gcgatcacga agatcaccat taaattcttc catagaggga aacggtttaa cacaataact
    30841 ccccgaatgt taaagttgga taagagggtt gattaaagtg attttaatga accttttggt
    30901 aacaccgcaa caacgaaatc acgtttgatg gtcacttcag ttgtgtcatt taatgcaatc
    30961 acgatgttat cgttatcagc ggtcactttg gtaattttac cgattaaacc accgctggtt
    31021 aatacttcat cgccttttgt caagcttgcc agtaaatcac gttgttgttt ttggcgtttt
    31081 gcctgaggac gataaatcat aaaatagaaa attgcaccga aaataatcag gataaagatc
    31141 atttccattc cgccaccttg ttgcataaaa actccttaaa tgtttgagtg gtataaaaat
    31201 aagtgttata aaaaacgcct gttaaaatac cataaattca atgaattaac gagtagaaaa
    31261 attcatcgaa tgcttttctt ttaaacaaaa atttgagtag aatcagcact tttagtttag
    31321 gattaggttc ttggcgtgtt cttgcgctga cacaatagga gaaaaaatga aaaaattatt
    31381 cgctcaagcg gttatttttg gggctttttt tgcaagttcc gcttttgctc acaatgtgca
    31441 attaaatcaa gcattacctg ctgtttcggt tgcaaaagac ggggaattgg cagtggcagg
    31501 tggaaaggtt agctataaaa attggcattc atcatctctg gcaggtaaag tccgtgttat
    31561 tcatcatttt gccggtagaa gttcggtgaa agaaaaaaat gaagatttga tgacagcaat
    31621 taaaaatgcc ggttttgatc gctcgaaata ccaaacggtg acgattgtaa atgctgatga
    31681 tgcgattgtc ggcacagggg tatttgtgaa aaatagtgtg gaaaacggca aacttgacaa
    31741 tcctcacagc caagtagtgt tagaccagca aggcagtgtg aaaaaagcgt ggggcttaaa
    31801 agagaaagag agctttattg cagtgctgga taaatcgggt aaggtacaat ttacctctga
    31861 gggcaaactc tctgcaaaac agattcaaga agtgattggg ttggtgaaaa cattaacgca
    31921 ataaccagtg tttttatggg cggattttgt atccgcccat cattctagat aataaatcga
    31981 taacttatcg tgtgatgata ctcttctcct gcttttgtta tcccgccaaa ttggagtaat
    32041 tcaggctggt ttagtgaatt tgggaaaaac tcaggctcta atgctacacc agcgtaatct
    32101 tcatattcgc ctttagtcaa attaggttgt ccttttagcc agttgccggt gtaaagttgt
    32161 aatgctggca tggaggtgcg gagttccatt tttaagtctt ccacggctaa acaagcggtc
    32221 ggattttcac tattttttgc aagatgaaag gagtgatcgt aaccttttac cgctttttgg
    32281 tcgtcatcag ccaataaatc ttgcccaatt tttttagcat tgcggaagtc aaaactggta
    32341 ctctccactt ttttcagtgg agcattagga ataccgctgg catcaaccgg taagtatccg
    32401 tctgcattaa ttatcagctc gtgatctaaa atcgtctctg aaccttgcaa attaaaatag
    32461 gcgtgattag ttaagcaaag cggtgtatct tggttagcaa cggcatcaaa gctgatttga
    32521 agctcattct ctgttaagcg atactccaca aaagctttca cttcgccgcc aaatccttcc
    32581 tcgccatctg caaaaaaata actaaatttg accgcttgtt cgctttggct ttcaagttgc
    32641 cacactattt tatctgcccc aagctcgcca ccgtggagat tatgttcacc gttattttta
    32701 gcgagctggt aggttttgcc gtttaagcga tattcggcat tggcaatgcg gttagcgtaa
    32761 cgcccaatgg tcgctccaaa gaaagcggtc tgtttttgcc aattttttgc agacgtggtg
    32821 actaatactt cccgttcctc gttcggcatt ttgacaatgc acgaaagcca agaagcccca
    32881 acatcagaaa gggtaatgcg taaaaacgca ttttcaaggg tgaataattt catcggttga
    32941 ccttaattac ctagcacggc atagccgtac taggttaagc ataattcagc cctgctaggg
    33001 ctgaggttat ttattttaga gtagcggagc tacttcctta tgcttaaccc ggtacgcttt
    33061 agcgtgccgg gcattctcgc accccatcgg aggcagtaca aacgtggaag gtttctttaa
    33121 tgccggtttg cttttcgtaa ttgttagcaa cggcttggcg gagatcttcc actttgtcat
    33181 ttggcactag gcacacgaca caaccgccaa agccgccgcc agtcattctg gctccgccgt
    33241 ttttaccgat agcttgttgg gcgatttcgg ctaagcaatc cacttcaggg caggtgattt
    33301 caaaatcatc acgcattgag tcgtgagatt gagccatcaa ctccccgagt ttgaccatat
    33361 cattcgcttt taaggcctct actgcttcca gaactcgttg attttcgctg atgatatgtt
    33421 ttgctcgttt atacgccagc tcattctctt cactaagttc tgaggctcgt tcaataaatt
    33481 gttccgctgt gacatcacgc aattttgctt tgccgaagaa gtgggcggca aattcgcact
    33541 gttcacggcg actgttgtat tcgccggtaa ccaagtcgtg ttttacgttg gagttaataa
    33601 tcgcaatcga atagccttgt ggcacagggg ttggggtgat ttctaaacta cggcagtcga
    33661 tcatcactaa atgatcttgt tgcccgagag cggaggtgag ctgatccata ttgccgcagt
    33721 tgcagccgac aaatttattc tcagcctctt gcccgattaa tgcgatttgc ggtaaagaaa
    33781 gcggtaaatc gccgagtaat tgagcggttt taccaatcga cacttccaat gcggcggaag
    33841 aacttaaacc tgatgacatc ggcacatcgc tggtaatggc taaatctgct ccttgtttga
    33901 attcggggtg tttggcttga ataaatttca ccacgccacg cacataattc gcccattttt
    33961 gctcgcttgg ctcaatcgcc tggcttaaat caaattcatc ttgttggttg agatcaatgg
    34021 cgaacacccg ccatttgttg tcactacgtt tggcaaagct aaccgctgtg ccgtaattga
    34081 tggcacaagg cattacaaac ccatcgttgt aatcagtatg ttcgccgata atattcactc
    34141 tgcccggggc aaataccgtg cgttctgctt tataaccaaa atgttgttca aattgttgca
    34201 aagcgatttc ttgtggtttc atttcaattc cttatttatc tttatagtgt ttggtatcac
    34261 ttactgcatt taaacgttcg gcagcttgtt ccggggttaa atcacgttgg ctttctgcca
    34321 tcatttcata accgaccata aatttacgca ctgttgccga acgcaagagc ggcggataga
    34381 agtgagcgtg taattgccag tgagcatttt ccttgccgtt aaacggagcg aagtgaaagc
    34441 ccattgaata aggaaagctg atgttaaaca gattgtcgta acgggtggtg agctttttca
    34501 atgcaagggc taaatccgct ttttccgctt cgtttaaatc ggtaatggat ttgaactgct
    34561 tggctttcgg caacagcaag gtttcaaacg gccaagccgc ccagtaaggc acaaccgcaa
    34621 tccaatcttc ggtttctgcc acaattcgct cttgtttgtc taattcacgt tgtgcgtagt
    34681 caagcaacag tggcgagcca tattgagcaa aatatttcgc ttggcattcg tcttcaatcg
    34741 caatttcatt aggtagaaaa ttacttgccc aaatttgccc gtgtgggtga gggttagaac
    34801 accccatcat tgagcctttg ttctcaaaaa tttgcaccca ctgataatgc tctttcagct
    34861 cattcgcttg ctcttgccaa actgttacca catcagtaat ttcctcgatg gaaagttgcg
    34921 gtaaggtttt actatgatca ggcgaaaaac agatcacacg gctttcgcct tgtgtatgag
    34981 aaatctgaaa cagcggatca tcattcggta ttggtgccgg tgtgtctggt agcagggcag
    35041 agaagtcgtt tttaaacaca aacggcttgg tgtaattcgg gttttgttcg ccggtaatcc
    35101 gcttattgcc ggggcagagg taacaacttg ggtcgtagct cggtttttca tcttgcacga
    35161 tttcttcttg ttgcccttgc cacgggcgtt ttgcccgatg cggagagact aaaatccatt
    35221 gattttttaa tggattaaaa cgacgatgtg ggtgatcgtt gaggacaaat tcgctcatat
    35281 aaaactcctc gaaattagtt atgtaaagag tatagcgaaa gtcagacaaa atgactgtga
    35341 catagctcac aaaataatga tgtcaagcgg tcaaatttca gaaaaatttt gcaagttttc
    35401 ctccattttg cgatttaagg tagcttacgt ggaattgaat gtggcttttg gtagaataga
    35461 tgaatatgca agatattaag acaaaaatag atggaaagac tgaataaatt tgatgcttgg
    35521 ttaatgaatc ataaacctaa tgctaggtta agcggagcga gtcgtttgtt gacagagttt
    35581 tggttctttg ggttaaaaga agctagagcc tgtttatttg cgggattatt ttttattgcg
    35641 atgttttcgg taccaaaaac gggattatgg ggcttacctc gttatgatat tttgctgatt
    35701 tttgccatag tggtgcaaat tgcaatggtg aaactggggc tggaaacgtg ggacgagcta
    35761 aaagcaataa gcctatttca tttggttggt tttgtgttag aagtctttaa aacatcgagt
    35821 aatattcaat cttgggcata tccggatttt gcctatacta aattgttcaa tgtgccatta
    35881 tttactggtt ttatgtatgc agcagttggt tcttacatta tccaagcgtg gcggttgttt
    35941 gatttgaaaa ttaaaagcca cctgccctat tggttagcca ctttaacggc actgatgatt
    36001 tacctgaatt tctttacgca tcattacatt ggggattacc gttggtatat tgccgctttt
    36061 gcattagggc tgtatgcacg tacttttgta tttttcaccc cttatgacat tacacgaaaa
    36121 atgccactgc tgctttcttt cttcctgata ggttttttca tttggttggc ggaaaatatc
    36181 ggtacgtttg ccggaatttg gcgctacccg aatcagtttg gggcttggtc tatggtgcat
    36241 atgagcaagt ggagtgcttg ggcgttattg gtgatgatga cttttaccat cattgtgcat
    36301 ttaaagcata tcaagcaaac agtcagagtc tcgagcgatt aacaagctgt gggttttggc
    36361 gaaaatttta ctcatcagtt attttcagtg gaattagggg caaataataa tttgccccta
    36421 tatcaaatta tggattttcc ccttccacat caataatcat cacttccgac tgtgagccta
    36481 accgcatcgg cacgccccag aatccgtagc cggaggtgac aaaataatgc ccgaagccga
    36541 ttttttcata gccgtaatgt aatcgataga tcagtttggt aataatactt gcagggaaca
    36601 cttgcccttt gtgagcgtgt cctgaaactt gaatatcaat cggcaattta gcatgttgct
    36661 caatttcagt cgggcggtgg tcaagcaaaa ttaccggtag tttagtgttc acgttttgta
    36721 aaagctgttc ggcagaaggt cgatttttga ctaaatcatc attacgccca ataagggtaa
    36781 attttccgtt aatttcggcc gtttgatccc ataaaacagt aataccggcg tcggtaattt
    36841 cttttgcaat cgtttcttga gccccaaaaa agtcgtgatt gccaagggta gcatacacgc
    36901 caagaggagc ttttaatttg gctaaatgag gctgcatttt atcggcaaca taaacttcgg
    36961 tattgtcgtc cataatatcg cccggcaata aaatcagatc gactttttgc tggttgaaaa
    37021 tctctgccag ttggtcaagt tgcttggttc cgaacagttt tcctaaatgc agatcgcttg
    37081 ccataccaat gcgaagcggt ttctctaatg gtttatccaa tttcaccgaa taatgtacta
    37141 ctgttggggt ataagcgttg taatagccaa gcccaagtaa gccaaagaat gcaaatgggt
    37201 aggcgatttt cagccagcga ttgacggtag tattgccgtt gaatattttg taaatacaag
    37261 cggtgaaaaa actgataaaa aatgcaaaaa gtaacaatac caatatgaat gccattattc
    37321 taaatagcgc aaaagtacga gtaagatgca aaatcactaa tccgtttgcg actaagaaag
    37381 tgagaatacc aactgtttta cggtttttac ttgataaatt aaataaccag ctgacagtct
    37441 ttgcaaagtt gaataaaaag agttgtaaca ccgcaatcac aagggcggtg gtaatgtagt
    37501 aacgatattc catatttttc cttcaataaa ttggctaaac ccagccgatt tgtcttaata
    37561 aaaataagcc gatgctggca ctaaacattg agccgagagt cgtaatgccg atcagatttg
    37621 cggctgcctc gccgtctccg ccatagttgc gtgtcattgc gtaggtggct gaagcaacgg
    37681 gagcagaagc agccacaaag acaatgccta gttccatcgg cggaagttga aacacaaatt
    37741 tcccgagtag tagcaagaaa attggagcaa aaatcagccg aatcgaggca gaaaacagca
    37801 caattttatt gatggtgctt tccactcctt gattaaattg tttcaactgt ttgaaattaa
    37861 tgcttgctcc ggtgcagata agtgctaatg gtagtgtcag gctcgccatt aatttaccag
    37921 cagactcaag cggggttgga atttggtggc ttaattcaaa atagttaaaa gttaagcctg
    37981 caatgacggc tagaatcagc ggatttctca atatcgacaa tattaatctg ccaaaattca
    38041 cttttttctc gcttaacgat gaagtgaggg taatcactgc aagcacatta aaggtaatca
    38101 ccaagcacga aatataaact gaagcggcag cgagagcttt atcgccataa gcattgagaa
    38161 ttaaggcaat gcctaaaatc gccgcattgg tacggaaagt gccttgagtg aaaatacaac
    38221 gataacggcg gttttcaata tgtcgagccg cccaccattc cgcccataaa tagatcaaaa
    38281 tcgaaccgcc gactccggtc gagatcaggt tgatttggct ggagaaatct aacgggcttt
    38341 ttagcatatt caagaaaatc atcggtggca gggtaaaatt aaataccacc tttgatgcca
    38401 tattgcaaaa ggtatcgtca ataaattttc gtctgcgtgg aaaaataccg aacagcatta
    38461 acaaaatggt tggtaaggta acgccaatgc taaattggat agagtcgaaa agcataatgt
    38521 ttgccttaaa tgatggcacg agtgtctttt gcttgtaccg tagattatca ataaagtacc
    38581 agcgtggacg ctggtactat catcaatgga aatgaaatta caatcctgcc tttaagcttg
    38641 cttcgacaaa tttatccaaa tcaccgtcca gcacttgttg ggtggtgcga tgttccacac
    38701 cggtacggtg gtctttaatc cgtgaatcgt ctagcacata agagcggatc tggctgcccc
    38761 agccgatgtc ggatttgttg tcttccatcg cctgtttttc cgcatttttc ttgctcattt
    38821 ccagctcata tagcttcgct ttaagctgtt tcatcgcctg atctttattt tgatgttgtg
    38881 aacgaccgtt ctggcactgc accacaatgc cgctcggtat atgggtaatt cgcaccgccg
    38941 attcggtttt attgacgtgc tgaccacccg cccctgaggc acgatacaca tcaatccgca
    39001 aatccgcagg gttgatttca atatcaatat cgtcatcgac ttccggataa acgaaagccg
    39061 ccgagaacga ggtatgacga ccgttattgg catcaaacgg gcttttacgc accaagcggt
    39121 gaatacccgt ttcggttctg aaccagccgt aagcatagtc gccggaaatt ttcacggtgg
    39181 cggatttaat ccctgccaca tcaccgtctg aggcttccat tagttcggct ttaaaccctt
    39241 tgctctctgc ccaacgcaaa tacatacgca gtaacatttc tgtccagtcc tgagcttccg
    39301 ttccacccga accggcttgc aaatccaaat agcaatcggc actgtcgtgt gggccgctga
    39361 acatccgctt aaattctaaa tcggcaagtt ttttctctaa ttcgtctgct tccacttggg
    39421 cttcattgaa ggtatcctga tcttctgctt ccaccgccag ctcaatcaac ccttcaacat
    39481 cttcaatccc ttgctctaag gctttaatcg tattgacgat ctgctccaac attgcccgct
    39541 ctttaccaag cgcttgtgct ttttccggct tgttccatac atcgggttgt tccagctcgg
    39601 cattgacctc ttctaagcgt tcgactttat gctcaaagtc aaagataccc cctgatcacc
    39661 gcggtgcgct cgcttaaatc agttagttgg tttttaattg ggtttaattc aaacattgtc
    39721 gttcctgttt ttgcttattt taaaaagatg aattatagct gaagttaagc aagcggtcga
    39781 attttgcaag aaatggagca atgatcgttt ctagtaatga gatttggttc ataaaagttg
    39841 caactgtttc tgctatttgg ctttgatagc taaaaatctt taaaaaaaca agcggtcgtt
    39901 ttaccccatt ttttgcaaaa cgaccgtagc ttcttgctat aatcgctgaa aaaatgctgc
    39961 aaggagattt tatggcaaag cgcccaagtg atattgatgc aaccctattg caactggaaa
    40021 tcctacgccg tatccccaaa ttacccgcta aaattgatgc taaaagtttg caccaacagc
    40081 tattagatgc cggctttgaa cgggatattc gcactgttca gcgttcgctc aaaatgttat
    40141 gcgagcattt tgatattgaa tgcgatgagc ggagcaaacc ctttggttat agctggaaaa
    40201 tccgctcaga ggggctggca ttgccgattc tcaacgaaca acaatcatta ctgctaaaac
    40261 ttgccgagca acagctgaaa tatctgttac ccgcaaattt aatggcatca atgaaaccct
    40321 tttttgagca ggcagacaga atggtttccg gggcgaaaga caagcccgaa taccaatggc
    40381 taaataaagt ttgctccacg ccaaccagcc taccgctgat ccctgcaaaa attaaagaag
    40441 agatttttaa ttccgtaagc caagccttat ttcaaaataa gttgttaaag atcgaatatc
    40501 agaaccagca cggcaaaaaa caccaagcga caattatgcc gttggcgatt tcacaacaag
    40561 gtgcgagcat ttatttggtc tgccgttacg aagggtttga cgacaaccgc ctgttggctc
    40621 ttcaccgcat tcgtaaagcg gagatttcta cttttagttt tgaacgcccg aaagatttta
    40681 atttgcaagc ctaccaagat gccggacacc tcggttttgg caatggcgaa aaagctagcc
    40741 ttaccttttc gattagcaga gacgccggtt tccatttaac cgaaacaccg cttgccaaag
    40801 atcaaaaaat tctcgaggag agtgaaactc actaccgtat tcaagccata gtcgctgata
    40861 atgatatgct aacctggtag ctacgcaaat ttggcgaaga tatttgggat atcgagaaag
    40921 aagcgctaaa ataagctaaa caagcggtcg gttttgtggg aatttttgct aaatagtatc
    40981 gaccgctcct ccctaaacag acctttatca taaatacaac tctttcaatc agatattctt
    41041 actgtctatt gatgaacgat tcgaattttt ctagtggttg aaatttaaac taattttctt
    41101 gctttttggc atttttcaga cttttaattc tctccattag cctgtttttt tacgctcttt
    41161 ttcataaaca ggaataacca atgccttttc aacttacttt ctgccaacaa gccggcaatc
    41221 agcaccagaa aaatcaagat gcactgttta acggcaaagc ggtgtaccaa tggcaactta
    41281 aaaatgccga gagttatctg ctggataacg acaaagtaat ttttggggtt gcggacggcg
    41341 tttccagcca ccctcgaaat catcttgcct cacattattt aatggcgtta ctcagccaat
    41401 gccaatccct tgatagccaa tggttgcgac aggctcacgg cgatttttgc gaaaaattag
    41461 cgaaagatta ttttggtgct tcttgcactt ttgttgcttg tgaattacac cataacggca
    41521 gagggcgtat ggttaatgtg ggcgacagtc gagcctataa aattacggca aacggggagt
    41581 ggcaacaact gagttttgat cacaccatac tggctgaaat gaaacagaaa ggcttggtta
    41641 aggaagggag caactatgcc tcaatgtata acggcttaac cgattgtatt gttgccgatt
    41701 ttgacgccga tgatttccgc attcatatag ccgaatttca actggaaaaa ggcgagagca
    41761 ttttgctctg ttctgacggt ttgcacgaac aactcgcccc agaagctatt caggcgattt
    41821 aggacggata cgaaagcccg tctcatcgtc tgcaaatttg cagaaaaatg gtaaaaatgc
    41881 accgcttgta tgacgatttt tctgcggtga tttgtgaaat tgtgtaatta aaacgacatt
    41941 atttgtcgca ttggtgctta aaatccgcat aaaacagagg agaaaaaaat gaaaaacgat
    42001 ttccattatg ccgctgaatt aatccgcaat gcagacggca ttttaattac cgcaggggct
    42061 ggaatgtcgg tggacagtgg cttgcccgat ttccgtagcg tgggagggtt atggaattcc
    42121 tacccaccgc tcaaaaaatt taatttgcaa tttatgcaga ttgccacacc gcttgcctat
    42181 caggaacgcc ctga
//
LOCUS       DANLRW010000006        37769 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.006, whole genome shotgun sequence.
ACCESSION   DANLRW010000006 DANLRW010000000
VERSION     DANLRW010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 37769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37769
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.006"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            74..292
                     /locus_tag="PXA71_000243"
     CDS             74..292
                     /locus_tag="PXA71_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5104394.1"
                     /translation="MARNKRVRDMSNFEIRGELMKIGKSLSQLGIENGLAKTTVRNAL
                     DKPYPKGEQIIAKAIGKTPQEIWPSRYE"
     gene            302..2272
                     /locus_tag="PXA71_000244"
     CDS             302..2272
                     /locus_tag="PXA71_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HDL5104395.1"
                     /translation="MKEWFLAKEIAGLSGVPELPNSVSRLATKEGWQKRQIQGVRGVT
                     YEYHLTSLPIETQQQLRLNAALAVIPQAAELQPKRDDPALIARLNNATDKGRDKAKGK
                     AEACMQLQAFLDQGFSYTQAEAGAATAKNVSQGSLKNWYYKVKGHPVHLWQAILISES
                     GRSKKPQLKAKITEEAWDCFLADYLRPEKPDLRASYRRTQAIAKQYGWQIASLQTFQR
                     RVLAEVPYEVILLKREGANAVAKLVPALQRTVKDILAGEWINGDGYQHNVFVKWHTGE
                     IVRPKTWFWQDVRTRKILGYRTSISENTDSIRHALMDVIFNVGIPKTLTLDNTRAAAN
                     KAMTGGIENRYRFKHTELDPKGIMPILGIDVHFTSILYGEGHGQAKPIERAFGRGGIG
                     EKIDKRPELSGFYTGRNAQETPDNYNGGKDGVDYNTFLKAIAAGIEEYNSQTERHTEM
                     CRGELSFNQVWERDYHPSNVRQASPEQLRLLFLQAETVSIKRNGSFTLKAAGKLYGLT
                     NVYWAESLIGITDKKVVARFDPDDLHGNVYVYNLEGQFLAEAVCREAKGFGDTSASRE
                     QGRLYQKVVKSAKAQAEALELLEAHELASLAPQVDVPEPIEKKVKEVLVKEDFIVDFN
                     TVRKATVVEETEEISIFDEVLLKQEKQLRIVE"
     gene            complement(2452..2940)
                     /locus_tag="PXA71_000245"
     CDS             complement(2452..2940)
                     /locus_tag="PXA71_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104396.1"
                     /translation="MLFRSLTDDEIHQIALDSARATFSGFKLKRANAIVMKNCITLFK
                     LSTINFCLAEYHSSFHHLTSIDDLDGIMPTVKKVAQMLSLQESKALIWLLYLKWLFVM
                     RQRSLQVLLENSADLIQGEVIAQPLPTFVKAVLAFQLETYHGLPEWIPEFDSAEFWQS
                     LS"
     gene            2972..3913
                     /locus_tag="PXA71_000246"
     CDS             2972..3913
                     /locus_tag="PXA71_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5104397.1"
                     /translation="MTLIDQIKQHIAESGSSQGKVAKEAGINAGALSAYLNENYKGNN
                     EELEAKLIAYLERIEAKKREFVEAPSFIETKTANQIFGSLRFAQNTGVLAIIHGASGV
                     GKTQAAREYRKRYANVWLVTASPSRSSLSEVLYEIALELGMNDAPRRKGTLARLIVRK
                     MKGTAGLLIIDEADHLPYEALEELRLLQEEVVNESDIGAGVGLVLIGNDKVYTRMKGG
                     INPAHEYGRLWSRSAKRTSIQKTKKEDTQAVAKAWGLSENQEALKVMQAITETGGGLR
                     ILTHTLRLAAMVAKDRMIPLTADLIQLARKDLLSTGD"
     gene            3916..4230
                     /locus_tag="PXA71_000247"
     CDS             3916..4230
                     /locus_tag="PXA71_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104398.1"
                     /translation="MRTPKPKHSFNRTNQAACRFLKQTQKAIIRLNSLGFTVLNIDFT
                     RIKPRIEVEIGNNKHIAQGLIYEGKAYRYSFGKSEDLGRWEGYYTMLEGIRVWWRQAA
                     IH"
     gene            4242..4478
                     /locus_tag="PXA71_000248"
     CDS             4242..4478
                     /locus_tag="PXA71_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104399.1"
                     /translation="MKTLALLTALLGLVGCDLVQSKQAKNYIGNNLTEICIDNVVYLI
                     YSGDKKGGITPKVNKDFYPYTCTNKEERQNGKTR"
     gene            4462..4755
                     /locus_tag="PXA71_000249"
     CDS             4462..4755
                     /locus_tag="PXA71_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104400.1"
                     /translation="MAKPDETPITKAECQSQLAELGVQYKKLPMAITRHICNATTNIH
                     GKVIKVSVVERVGYGVQITAQGNEKSCLVTYEAMLGMAEAMGLFDEVKEQNND"
     gene            4877..5095
                     /locus_tag="PXA71_000250"
     CDS             4877..5095
                     /locus_tag="PXA71_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL5104401.1"
                     /translation="MNDELAAISASYAQHNRYQHYAEKAAEAERKGNYKEAQDHWEVA
                     KLSAKKTANRDWAEQRAEFCKRMHNKPF"
     gene            5105..5287
                     /locus_tag="PXA71_000251"
     CDS             5105..5287
                     /locus_tag="PXA71_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104402.1"
                     /translation="MTETVKAQLNSQLNEAIIQLIQAQKYLNQDDAIRSGVYIGTVQD
                     LLPKVHLKLLTANRKH"
     gene            5304..5692
                     /locus_tag="PXA71_000252"
                     /pseudo
     CDS             5304..5692
                     /locus_tag="PXA71_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249673.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5741..6028
                     /locus_tag="PXA71_000253"
     CDS             5741..6028
                     /locus_tag="PXA71_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104403.1"
                     /translation="MNKNEFFKKYHLEGSLAILDLDANDDQSQFCYQALLEYRELPLD
                     TFLAEYSDDEDMTESEFIELMLDELEWIIRRAKNAKRFVKKRQKTMREEIM"
     gene            6147..6692
                     /locus_tag="PXA71_000254"
     CDS             6147..6692
                     /locus_tag="PXA71_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1018 domain-containing protein"
                     /protein_id="HDL5104404.1"
                     /translation="MTDKAKLIQLIHIAKSQLAMDDLSYREMLKRLTNKTSSTKCTVV
                     ELHKVLHELQTKGAKVKYFAKRSKKPTAYSPATGETAVKSQIAHKIRAVWITMGKHGF
                     LNDPSEKALNAYMRKVINNKTRPTILLNVSALEAGDASYMLEILKKWHKRVMIKALSK
                     SCTVDPKISYDELVEWYNEVM"
     gene            6679..7212
                     /locus_tag="PXA71_000255"
     CDS             6679..7212
                     /locus_tag="PXA71_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104405.1"
                     /translation="MKLCRCPICHSDIHLEALVEDEAGRELLGKISQLTHGVAQPMVA
                     YLGLFKPQKSNLNNSRALKILNDVLALYPCSLLLAQALSETVVSIRKKRQQAMENGQK
                     IEPLPNHNYLKSVYETQKVHFAVVRTGKTERETMKAELEKTRNAIAYVQRFVDLGREE
                     VVKNSPEYQIWLAHKPK"
     gene            7377..7736
                     /locus_tag="PXA71_000256"
     CDS             7377..7736
                     /locus_tag="PXA71_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5104406.1"
                     /translation="MELVDIFEEKAPEVLTDLAKHIEVALEEKCQFSPEKAKQIGIDI
                     AQQMAQNWGGEVIYIPRNLLMALNERDMKIYEEFNGNNHRELARKYNVSMQWVYKIVK
                     KVHKDEVARRQMSMFEM"
     gene            7872..8381
                     /locus_tag="PXA71_000257"
     CDS             7872..8381
                     /locus_tag="PXA71_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL5104407.1"
                     /translation="MSQNLTFRQIFDRLIGHEGGYVNHPQDPGGETHWGITKRTAVAN
                     GYMYAMKNMTREQAYQIYEKAFWQRYRCAELKPAVAYQFFDAVVNHGFGNASRMLQRA
                     VGVADDGIIGNITLQAINAKSESDLLMLFNAERLKFYTKLRNFPTFGKGWVNRVAGNL
                     EYAAQDNEV"
     gene            8384..8653
                     /locus_tag="PXA71_000258"
     CDS             8384..8653
                     /locus_tag="PXA71_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL5104408.1"
                     /translation="MAKLFKELLSTNGTLSTTSTVQFFGTLCVFGLMVYAVITQQPYA
                     ESLLNNVLIYLFGATTAKGVVTSYQAKIKGGIHKQQSTFKEEEGC"
     gene            8647..8994
                     /locus_tag="PXA71_000259"
     CDS             8647..8994
                     /locus_tag="PXA71_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL5104409.1"
                     /translation="MLMQQILGVIGVIAAILSYALFKSWQLKRERKKNAILQAEKQQQ
                     AVEIEQKKAEVKYVYISKKNNEKVTRSSASDIDDKLQQHGYFRDNNRLHGVQSDLSEP
                     CGYAGNETSDSCS"
     gene            9021..9173
                     /locus_tag="PXA71_000260"
     CDS             9021..9173
                     /locus_tag="PXA71_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104410.1"
                     /translation="MKYIKKLRKRWQIWRFLKNHPEVAQRRDLLAIAIKQGVENPVGR
                     ARRREP"
     gene            9173..9508
                     /locus_tag="PXA71_000261"
     CDS             9173..9508
                     /locus_tag="PXA71_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2730 domain-containing protein"
                     /protein_id="HDL5104411.1"
                     /translation="MDLFTVFWESIRANFGFISALLTIVVTAFWLKLDSKYAKKNDLG
                     ELLEIAKSHDNRLTTLETKVENLPSAVDVEKLKTLVTDVKGDTKATSKQVDSISHQLG
                     LLLEAKLKE"
     gene            9510..9806
                     /locus_tag="PXA71_000262"
     CDS             9510..9806
                     /locus_tag="PXA71_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104412.1"
                     /translation="MSLRDLLTQDQRLVILRSLAEAGYDANESIISDCLDLYGHDISR
                     DLVRTHLSWLEEQGLLTLERLRDGYMVASITQRGLDVAQGRVVVSGVKRPRPKI"
     gene            9829..10401
                     /locus_tag="PXA71_000263"
     CDS             9829..10401
                     /locus_tag="PXA71_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3486 family protein"
                     /protein_id="HDL5104413.1"
                     /translation="MSEKNTRGRASKVDLLPPNIKTQLAMMLRDKQYSQSQILEEIND
                     LIRDCGLPDEMLLSKTGLNRYASRMERLGAKIRNAREVAEIWTKQFGEMPQTDIGKTL
                     MEMVKQIAFETSLKLGEQEGGIEPKQLALLSSAIQRLEQAESLSFKREQAIRKEVAQQ
                     AAETAEKVVVQAGLSAETVRTIKEQILGIA"
     gene            10401..11957
                     /locus_tag="PXA71_000264"
     CDS             10401..11957
                     /locus_tag="PXA71_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HDL5104414.1"
                     /translation="MALLNNRPLNELAPECRSFLESIHAFNPNELLLGYQKRWIADDS
                     QLKIAEKTRRCGLTWAEAADNALIASTRKSDGGSDVFYIGSNKEMAREYIDAVAMWAK
                     AFNRVAGEIQEEIFEDEDKDILTYVIYFSSGFKVKALSSNPKNLRGMQGVVVIDEAAF
                     HEYLAEVLKAALALTMWGAKVRIISTHNGSENLFNELITDSRAGRKRYSVHTITIEDA
                     CRDGLYQRICQVVTKKTWSPEAEKEWIENLLNDTASEEDALEEYFCVPKFGSGLWLSR
                     ALIERQMSEATPVIRFTAKDGFSLVAEPTRYAEIAEWCELELEPILATLNPDLLHFMG
                     EDFARSGDMTSLVVLAQQQNLVRKVAFIVELGNMPYKQQEQIVMFMLKRLPHFAGGAF
                     DARGNGGYLAEAARDEFSTLIDCVQLSEKWYREHTAPFKAALEDGELEAIPKDADILA
                     DLRSFQVVKGVPRIPDKRTKSADGKSKRHGDTAISLLLAHYASRQLVQMPVEPVSRRP
                     RHSQQLTEGY"
     gene            12076..13530
                     /locus_tag="PXA71_000265"
     CDS             12076..13530
                     /locus_tag="PXA71_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 family protein"
                     /protein_id="HDL5104415.1"
                     /translation="MAKKNNLISEIATRARSIDYWAFGYYLPNPDPILKRMGKDISVY
                     RELLSDGQVRSGVRRRKAAIKGLEWRITTTNNEKVDEQIYQIFNRLPMNNLITEMLNA
                     ALYGYHISEVIWAKEGELFVPTEIIGKKPEWFMFDDENLLRFRTKENWADGELLPDDK
                     FLLTTQEATQDNPYGLGDLSLCFWAATFKKGGFKYWLEFTEKYGSPWLIGKHPRQAHN
                     TDKERLADALEGMISSAIAVIPEDSSVEIKDAAGKSASTDAFEKFLNFCKAEINIALL
                     GQNQTTEQESNRASAQVGLEVMEDIRSDDQAMIEATFNTLLQWIVKYNFNVEQLPKFE
                     FYEQEAINTDQVERDSKLHAMGVRFSKAYFEREYGFEAGDIEVQAVEKAEKSANTTEF
                     SEGQRRTQVPMPVPILEQLEHEGEAMVDDWLQGVRDKLAQADSLEDFQSQLDSLIPEL
                     SFAEYGELLALGSTVAELAGRQSVNDEIKAKRNA"
     gene            13523..14800
                     /locus_tag="PXA71_000266"
     CDS             13523..14800
                     /locus_tag="PXA71_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5104416.1"
                     /translation="MRKFTFKQQAQYFEKKLNLRTNSYLDILGEEHDYFFVVAGANRN
                     EVLSEFRKAVDEAIHNGETLENFRKRFDEVVAKTGWEYNGGRNWRTRIIYDTNVYGAY
                     NRGRLQQHLELAEDMPYWEYQHNDNAHPRPQHVAWDGLVLRYDDPFWKYHYPIKAYGC
                     HCTVQALDDFDLKHDGKTVSPPPEIEFEQKTVGVRTGNSRVVTVPKGVDVGFTPHNFD
                     NLKAGRAANVDKLLMQKMVTADPIFASKAVSDLLAKEPVAKLHNQAFKNWVNDVANAK
                     GSALSQVENMQLLGVLPVAVIERLQQINLAPQSAIIAITKGDMVHALRELKQNTGIAV
                     PLEFWEKLPAKLQYPNAILLEKQQAETTLLFIYDVAQTKIAVKVNYDATLQDRHGAKG
                     RQKVLLNRAVTGSLFQDTTGLKSSKYEVLLGEM"
     gene            complement(15002..15346)
                     /locus_tag="PXA71_000267"
     CDS             complement(15002..15346)
                     /locus_tag="PXA71_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104417.1"
                     /translation="MMVNAEQAIELVYDLLLSRQWLVTKAEKLPLDPLSEKEAVMFLY
                     TLDQQTEASWLQLTPEQRATANGLIMDFIAKCLTSTKQWLVSDNIVPELQAIEIIKHE
                     IFLSHNSLVMPN"
     gene            15410..15874
                     /locus_tag="PXA71_000268"
     CDS             15410..15874
                     /locus_tag="PXA71_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5104418.1"
                     /translation="MIKITLNNTQAVKSLQQIANQLEQPRRLYGILGETLKKIHTARF
                     KAEQDPDGNNWKPLASSTLALKRKRGKSTKILRQDGYLADKTAYNVTSDNVEFGSQEV
                     YARLHQFGGKAGRGKKVTVPARPWLGVGDKDEQLLLRKAEWHLGQIIGRMGK"
     gene            16109..17224
                     /locus_tag="PXA71_000269"
     CDS             16109..17224
                     /locus_tag="PXA71_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HDL5104419.1"
                     /translation="MTQIEIFKAGKRYDANGTLIDITPEMLQQTVAAYNPEFHEAPLV
                     IGHPKSNNPAWGWVKALSLEGDVLKAEVDQLDAEFSEMVASGKFKKVSAAFYLPDSPN
                     NPHKGVLSLRHVGFLGAMPPAVKGLKQVEFAEDDDFVVFSEWGVASLFSRFRDWLVSE
                     FGLEKADKALPPHEIDWLKEEAMRSQISKQVHAEQATPEPIFNEPAQPEGEPEMSAEE
                     KEELERLKAENEQLKAEKAQAEAEKMEAELEAEKAGNAEFCEGLVKQGKLAPVAKAAF
                     VQALNNLSVLKAGREPEFNEGEDVVSQFKSAMSQSPQIIQFGEYATADKANPQEAEAV
                     EYAEGTDPVSIEADQKVRAYMKAHNVGYAAAFNAIYR"
     gene            17255..18181
                     /locus_tag="PXA71_000270"
     CDS             17255..18181
                     /locus_tag="PXA71_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HDL5104420.1"
                     /translation="MTTHNLQKLRVQDPVLTELAQGYHNNELVAETLMPTVEIEKEAG
                     KIPTFGRLAFRLPSTVRNLRGSSNRLDPEDIGAIDVALEEHDVEYAIDYREENEAIFS
                     LRQFALNTTQDVIALGREKAVATLALDESRYETDNKVTLSGTSQFSHKDADVFKVFDT
                     AIRAVKRAIGRKPNVCVISGDVWAALKEHPAVVEKLKYSQVAIVTPEVFAKLIGIETV
                     KIGEAVYEESGQLKDIWSKDIVVAYVAPRSTGGKGTVYEPSYGYTVRRQKGLFVDTYK
                     ESGGKIEVVRTTDIHKPHLVGAAAGYLIKAAV"
     gene            18250..18531
                     /locus_tag="PXA71_000271"
     CDS             18250..18531
                     /locus_tag="PXA71_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104421.1"
                     /translation="MAKFIVLHTPILHDGKRYEVGAEIELTAEQAENNAINLKAVEAV
                     PKPPKNASKPEDEPKPEGEPKPEDAVTEDDVKLAEAKIAEAEQPKGNKK"
     gene            18531..18965
                     /locus_tag="PXA71_000272"
     CDS             18531..18965
                     /locus_tag="PXA71_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL5104422.1"
                     /translation="MYVQIDELLTAFSRKIVVQLSNDEPTATEPDLKMLETAVKVANE
                     RIDAALRSRYTLPLADVPTLINQHALTLARYWLYARRPETKMPDTVKETYQQAVKELE
                     QIATGKLHLGIAESSQILEDDVLADNSEYEVRANARIDTSRY"
     gene            18971..19468
                     /locus_tag="PXA71_000273"
     CDS             18971..19468
                     /locus_tag="PXA71_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gp37 family protein"
                     /protein_id="HDL5104423.1"
                     /translation="MSATQPILEDICQHLRQALPEWEVELFPNDPSTYHLSHINGAVL
                     ISYLASKFEKPRTTQAVLQVRHVQIALTVLTRDLHNDVGALDLLDKLRLLVVGFKPQN
                     CGECWLIDEFFNGSSEETGLWQYQLILQTETQQVQHQAVENLPKFVTAHLRRQDQPGS
                     PGLKT"
     gene            19553..20938
                     /locus_tag="PXA71_000274"
     CDS             19553..20938
                     /locus_tag="PXA71_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath subtilisin-like
                     domain-containing protein"
                     /protein_id="HDL5104424.1"
                     /translation="MTFHHGSETERVNGGSVPVSVVDSAIIGIVGTAPIGAVNELTVC
                     LTKKDFAKFGTILNQGFTLPDAFDILARYAAGKVYVVNVLDPSRHRTTVTDEVLTLDR
                     NTLTAQTAKTGIIAVTRVKDGANVLNADRYSVDLQTGVVTFVSAPSAPKISYIYADPS
                     KVTEEDIKGGVDSLTGKRKGFELLRDGFNLYGADAKILICPEFDKTASCAAALATLAD
                     QLHAKAYIQLPKGTSLSKAIQGRGPAGTINASASNENVRHFFPYALGSSNTLESLATH
                     AAGLRMLIDVEKGYWFSTSNKELKGVIGLEIPLTARVDDKQSETNLLNAVGITTIFNS
                     FGTGFRLWGNRSSNFPTVTHISNFEVASRTGDIIDESIRQAELQFIDLPIDDALLDSF
                     LETIDTFLRTQKSLVGYSVSLDYEYDLVDAFSRGQVPIVYEYTPKIPGERISNKSVMT
                     RKYLANLVSQR"
     gene            20949..21464
                     /locus_tag="PXA71_000275"
     CDS             20949..21464
                     /locus_tag="PXA71_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HDL5104425.1"
                     /translation="MSIAINQIVNGNVYINGNSQMGRVNEVKIPDIEFEFIEHKGLGM
                     HGVIKLPAGTNAIEAEITWDSFYPEVRAVMLNPYKYTQLQIRSNLQVFNSQGLAAEEP
                     MVTIMNVSAGKIGGTGHKNKENAEFADTLNVHSIKQTVAGRELLFIDVLANIYRVNGV
                     DVLQKFRTNIG"
     gene            21560..21874
                     /locus_tag="PXA71_000276"
     CDS             21560..21874
                     /locus_tag="PXA71_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HDL5104426.1"
                     /translation="MANAAQQVLTNLRVQTTYKLQYPIALPDGRVIETLDVRRPKGKD
                     FRLLDEKGFDPEKDGVKILRFYIQQLTTLVPEDIDELDAADIKGLNNLLEDMLIEGKS
                     DK"
     gene            21871..22023
                     /locus_tag="PXA71_000277"
     CDS             21871..22023
                     /locus_tag="PXA71_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005658873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HDL5104427.1"
                     /translation="MSELDTVYADLAWWFKFSPSELLELDLVDIPKWVEQMNRQIKAG
                     YGQILR"
     gene            complement(22002..22304)
                     /locus_tag="PXA71_000278"
     CDS             complement(22002..22304)
                     /locus_tag="PXA71_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104428.1"
                     /translation="MLTKLNNRITEWAGFEACVTRTECTAKWLLAVALVGWSIFYWLD
                     AIQSIQSLSEGVSFVLIYGLILTILAWVGVYLAWGVAILLTLATEPFIWLYRKICP"
     gene            22352..25009
                     /locus_tag="PXA71_000279"
     CDS             22352..25009
                     /locus_tag="PXA71_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5104429.1"
                     /translation="MANNLAIGMVIGASLSSGFHGAFSGAKKKLEQLEQAVAKNQQSH
                     SKLGSELTALRSKQATLYAEMSRASSKGGAGLALMQQEYKKIGKEIANISREQRKWST
                     ELEKSIAKQTKLRNAMERHTQAKENRDELKGKIIGTVASAAMGVGVMKTYMEQEEAAN
                     NLKISMLKADGSFGKFEEIGKIADTLGTDLPGTKKDFYKLAMALKKQGVSDDVLTGGA
                     LKTSAELNVLLDMDQESGGEFLAKFMESHRLNENELPQAADYLQRAMFAGGLSKEQMY
                     ESMKYYAPKLNSMKLTGAENTEKVLAIEAMAGQQGLEGSTFGTGLNMMLSRMNKGPEM
                     LKAAAKGMKAEAREMMEAVGVEFNFWDKNGSFKGIDGMLAEMTKFEKIRKKFGDKGVG
                     LVAEELFGIEGGRLADILAMKGQKGLDEMLSKMREQASLQDRINLKTNTLGAALESLG
                     GAWETFVGDIGSVFAEDIKGFSKGLQSAVEWLVPFVSKHKEAIKFVGGLVAGLVILRG
                     VLQAGSFVIQTVTMAMNALKIAAMTNPIVLVIGAIAAGAYLIYSHWDSIAPWFANLWQ
                     NVTAYFNQFWTWVKGVWSGVTDWVSSVWNGVATFFGQLWTTITSLFSVAWTNIQTIWG
                     GATAWFSGLWDGIKSAAFGMFDSISQKVSSVVASIKSFLGFGDDVDKMGAKIGNVATQ
                     VISKEHSGQLSKTADMAANTGFSSGGFTGQGGKYTPAGIVHKGEYVMTKEATSRLGVG
                     MLDSLNYGGAMGFTQPVLQPILGKQKGFFGSLWDDVKFGANFVGNLLGLNQGSLKTPD
                     FNPNATNASGQNSSIFSNYEPLNRNAVTQQESSQAPQIVVNFNPTINVNGNATQEAQS
                     QIMQQLQMSAYEFEKLLNRVLDQRSRRAY"
     gene            25019..25942
                     /locus_tag="PXA71_000280"
     CDS             25019..25942
                     /locus_tag="PXA71_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5104430.1"
                     /translation="MYFMLGNIAFEPVNLTEFSEQHTAEFAEHAVLKGKPRLQAMGEK
                     LNELNFSLRLHHTIGGVESRYQALLEAKAKQAALALIWGSRYKGDYVIVDISSTTLFT
                     DGRGNALAREMQISLKEFVGDNDGGVLGEALNFGGGSLLGSILPSGAVTTLSQIKTAV
                     SRGVELYNSGKRLVDEVQNTVAIIRQLKNDPATALAYLPAALANLDGALGHFGNLTGS
                     SATLGGLQEKLPAAVVFSEEIGEIYQSLQTMRSSLGNASANSWDNWFTPAESALTEVT
                     DSFDHLAKPVAKMTAWIVLRTDEEAENDTVA"
     gene            25926..26153
                     /locus_tag="PXA71_000281"
     CDS             25926..26153
                     /locus_tag="PXA71_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail protein X"
                     /protein_id="HDL5104431.1"
                     /translation="MTQLLKHIVKQGERWDNLSYQYYGNAFEYGRIIDANPHIGFCEV
                     LPIGVTIYIPVLNVKPTNNENMPPWLRGRDA"
     gene            26146..27210
                     /locus_tag="PXA71_000282"
     CDS             26146..27210
                     /locus_tag="PXA71_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104432.1"
                     /translation="MRNVPKPDFSLFYEKTNITAEIEPHLVQLTYIDHLEGQSDELTV
                     EFEDIQGKWIRQWFPTQGDKLKAAIGYQGEFLTDIGEFEIDEVEYSYKPSTINLKALS
                     TGISKANRTLKPKAYENTTLAQVVAKVADNLKLKVVGKIKAIPIKRITQYQERDVEFL
                     ARLAREYHHSFKIVGNQLVFTDKSELGQSEPVLMLEERDTISLRLRDRIKDTAKAVEI
                     SGYDTSGKKVVKKRKKAKALRPNIKQAKSASEDTLKIITRGESQEQIDARGEAALATQ
                     NEDQAAGDIELIGNPKLVAGATILLRNFGVFSGKYLIKSSRHTISRSGGYTTHIEVRM
                     LEFIADDLITLGMEAGNANA"
     gene            27197..27733
                     /locus_tag="PXA71_000283"
     CDS             27197..27733
                     /locus_tag="PXA71_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5104433.1"
                     /translation="MQTHNFGATYQEGIVSAVDPKTHKVRCKIPALEDLETAWLSFLT
                     PNAGGNQFYCLPDVGELVAMLLDAQGEGGCVFGAIYNEQDPTPVADSDMWVKKFSNGT
                     EISHNRKTGDVVVKTNGHLTATAQGGATINANTVVNGTLHATGKITSDEEVSAPVVKQ
                     GTVELGTHKHGGSPEPNK"
     gene            27788..28150
                     /locus_tag="PXA71_000284"
     CDS             27788..28150
                     /locus_tag="PXA71_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPW/gp25 family protein"
                     /protein_id="HDL5104434.1"
                     /translation="MNRQTSIQLTHWQLAPSTDTVEVVQGIDDIHLCIVNILSTQKGT
                     DILRPEFGSDHFRYIDYPEDVAIPNFVREITTALQKWEKRIEVEEVLVDGSAPHFIFT
                     VMWHLTDDVYREIYRTTV"
     gene            28160..29263
                     /locus_tag="PXA71_000285"
     CDS             28160..29263
                     /locus_tag="PXA71_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5104435.1"
                     /translation="MTEAIKIIDDDVKTVLAEAIADYEKRTGKILQPAHIERSIIQTY
                     AYREQLLRKGINHAFLQTFPQFATGIALDLCGETFGCYRLRDKPARTLLRFSVSGEHT
                     AIVIPKGTQVAINDELYFSTLNDDVITPLITYVEIDAECNQVGVIGNGWESGRVSKLK
                     TALATNYKVTVENIDITSGGLMQEEDEPYRKRILAAPEAFSNCGSIAAYDYHVRSVSQ
                     DIADVNISTPRGGLVRIAVLTQKGLPDTRLLDDIKKHVSAERLRPLCDMVEVIKPTER
                     RYQITARLILLDGYREDLVKAKAREALQLYLSDKTKKLGLDIVPSAIISALRVEGVYD
                     VNLIQPVKTIINETEWANCTAISVEVEEERRDG"
     gene            29256..29822
                     /locus_tag="PXA71_000286"
     CDS             29256..29822
                     /locus_tag="PXA71_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5104436.1"
                     /translation="MASLHYADIIVRDPKYKALADLSKRLNLLDTSQIMTTLVDLLGD
                     ECIPLLAEKWSVTGYDGLLVADSENSKRALIKRAIELHQLKGTPWSIREVLRRLGFGE
                     VEIDEGLKNRLYESTYVSGIPENERWAHYAIRLSNPITNEQARNIRKVLRNFAPARCS
                     LAVLDYKADPIRYNNKATYNGTYNHGSS"
     gene            29832..32111
                     /locus_tag="PXA71_000287"
     CDS             29832..32111
                     /locus_tag="PXA71_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HDL5104437.1"
                     /translation="MAGVQETAQWENHVYRIEENDPVHGGENGVTNKPIKHLANRTLY
                     LRRLLTEAGQRINPKKITATSKNSNDLTGHTHEIDHASLTQKGIVQLNASIQSTSTTE
                     SATPSAVKAAYDKAATAEQKATLANEKVEAIKVGGRNLLIQSNTPHNGNAYSVRYALA
                     EAPKVGEEIVVTLWGELGSQRTGIGVYNSQGATELAKLVKIRDGVYQGKGIWRKPMSE
                     GRERTPNDTHLNVYFYPKTATDNNRIERIQLERGSIGTDWTPNEADLKAEISAIRTKL
                     IPVRGGNVATTLNAAKRSDWFREMQIPYQSGWGYYTQAFHNSGTQHNYSNLPLTGRYY
                     FIAELYHNSGYSHLRITYPSLKRTFESAINLNNEDLILDWREVVFLKDGLYQGTFKTT
                     GTLESAYRLRAARDDERYQPYLQMVDMGYDLANPPVGKNKIIGSVDYYVKNGTSESSK
                     ATMMAAAMPDKNVFWEVALWNAAQQRNVLFKGYSKTNNLSIGKTTDNERDRVQVNGTI
                     QATAPADNANNDQVPTTAWVRKMAKILADGKVSKAGDTMTGHLFIKNGEYSAVHTYNT
                     SGWFAKWEAAPLSDSHFAAIVYANDRETVINRVLIPKKNGTVALINDIADTVRAAVSR
                     SDKSRSRTFPLQTGKKYTTTGSVTIYPDGRIVQIFHLKNIKAAWFDYEASAVGDRHRV
                     VNIPLWTAMPNKIFDVDVKTVRPSNNASTYYIEAAEWLSAWQIYGNDTNKSSVNINLS
                     RFRGGKDEDMDLYVTVEGY"
     gene            32112..32714
                     /locus_tag="PXA71_000288"
     CDS             32112..32714
                     /locus_tag="PXA71_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104438.1"
                     /translation="MAYFVNVIDEQGNYELIDDEFIGLYPDLDFNTLPKLTDKQYQTY
                     LAKANGKERFVNGEFVYEQIKVDMQAVISAEKSAKLAEINQKAQAFINDLAKYNETPK
                     FERDTWLEQAKEAKAWVADPTVQTPTLELIAQMRGIPLDTLRQKAYEKAMAYQTVAAI
                     VAGQRQGYEDRLEQAETLEQIQAIEPMYQLPQGANNEQTD"
     gene            32698..32973
                     /locus_tag="PXA71_000289"
     CDS             32698..32973
                     /locus_tag="PXA71_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104439.1"
                     /translation="MSKLTKLKSWSYHVLIAIDQLFNALTGGAADETFSSRCYRGAVL
                     AENPKKRWRFWHSFLNCLFLDPKHCYAAYKAEVHRKQYPKAFRLGGI"
     gene            32973..33260
                     /locus_tag="PXA71_000290"
     CDS             32973..33260
                     /locus_tag="PXA71_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104440.1"
                     /translation="MKKQNLKLVRGDDVSFRFSIKDSTGQPLALKDLWFDLHLVSYQG
                     EVLIALSTDDGSIETAEAGQMVLHFSHQQTARAEWTSANYDLQLTHDYTRV"
     gene            33270..33434
                     /locus_tag="PXA71_000291"
     CDS             33270..33434
                     /locus_tag="PXA71_000291"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104441.1"
                     /translation="MTSIIELDLTDDLIIEVQLDSTIITGDSFLANLPDLLQIYNQAK
                     SDSSKELNND"
     gene            33427..34131
                     /locus_tag="PXA71_000292"
     CDS             33427..34131
                     /locus_tag="PXA71_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104442.1"
                     /translation="MTKHKNHENHPIAITFYQLGKDVGDINRRLAVIEQREQSAQPSQ
                     PQAEAVTMPQQDAVAINNINAVLEAVEKYKTFEKYNTQWQERFEKFLSRNPNDYELSE
                     EQRQKLYHTMCQHLWQVNFTEINSKQYELPIPQQFQGKFGYIVKTSGGSTEISFELLS
                     ETHSTYLYPDSYIPEGGGDVMLKPAYIYLVIPDLVAMREPEVVGVSPLKLNILQKHLL
                     TPQKLQEQKPLNTKAN"
     gene            34300..34455
                     /locus_tag="PXA71_000293"
     CDS             34300..34455
                     /locus_tag="PXA71_000293"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104443.1"
                     /translation="MNKSLVALAVAAMASKAQTKQQASKQASKQASKQASKQASKQAS
                     KQASIVR"
     gene            34452..35291
                     /locus_tag="PXA71_000294"
     CDS             34452..35291
                     /locus_tag="PXA71_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104444.1"
                     /translation="MEKVFKQAPLPFSGQKRMFLSHFKQVLNANIEADGKDWTIIDVF
                     GGSGLLAHTAKREKPLARVIYNDFDNYAERLNHIKETNQLRQEIYQIVDEIIPKNKRI
                     SNEIKAKIINKINDFEGFKDLKCLSSWLLFSGEQVATLDELFKHDFWHCVRQSDYPEA
                     TGYLDDIEVVSESFHQLLPRFHDKEKVLLILDPPYLCTRQESYKQENYFDLIDFLRLI
                     DLTKPPYIFFSSTKSEFIRFIHYMVQNRKENWQAFEGAERIVVNASASYNGKYEDNMV
                     YKF"
     gene            complement(35328..37766)
                     /locus_tag="PXA71_000295"
     CDS             complement(35328..37766)
                     /locus_tag="PXA71_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S6 family igA-specific metalloendopeptidase"
                     /protein_id="HDL5104445.1"
                     /translation="MKHTFKLSLLATSIAISLSPTLLASIVRGDVDYQYFRDLAENKG
                     KFFVGATNIPVIDKTGKNIGTFLQVTPTKQVEVESNISPKPNVSLSECFDNESLPGCY
                     EFLYGGGDEDSNDLPVFETVTGETMSIPMIDFSSITRQTGIATLVNPQYVISVNHNQG
                     YRDIQFGDSSSEKADDHHYNYSVVRRNNYMPDPNKERTDLGKGIEKRERNDEGEKLIL
                     DGSGNPTPRWDYHAPRLSKLVTEVAPANEIERTTENVQDFYSVFSDPFIFPMFIRAGS
                     GRQAVVNNERDRLNNGRIEVGNGPFLTGGSVLPVTNGDPSVPGSDFNSRILVAKTENN
                     TINDVFKDHGYGPLTTLGLPGDSGSALFGYDVRTKKWVVLGVYSDYFSENNTLGGDVY
                     KSYWNYHHPHYVRALEKENNAGAINANGARLTWTPSGNTSSIVGGNAPLTVNLADTSL
                     PTLQGHNGNTGDNPWNPQLQHGKTFHILGENNTLSLTENINQGAGAIHFHGNTTVEGM
                     KAGITWLGAGVDIDKDKNVIWKISNPAGDRLSKIGQGTLTINGKGENKGSVSVGDGTV
                     ILNQQADENNKKSAFSELGIVSGRPTVILNSSDQMDPNNIYFGYRGGRLDVNGNDLTF
                     RRIQNSDEGAMVVNHNTAQTANITLTGIVSPTIDQVKVQAITSPDQVSRHLDKDIFTY
                     QRFPHLPTNFIRLKKPLSVAEITAIFNARKVFIDLDFATGLIRENEYFEVLKVTDESA
                     AKQQILAEKIKAAEGTVQGFNGYFGETDPSKTNGRLNITMNSNCSEPTKLRNATTKTT
                     KENRSFTFLILMVF"
BASE COUNT        11859 a         7506 c         8790 g         9614 t
ORIGIN      
        1 ttattcgttc tgtagttaaa tgatttacat catttaagta gtttctaaaa ctaactttca
       61 aggatctcac aaaatggcaa gaaataaaag agttcgagat atgagtaatt tcgaaattcg
      121 tggtgagctg atgaaaatcg gtaagtcctt atctcagtta ggtattgaga atggattagc
      181 aaaaaccaca gttcgtaatg cgttagataa gccatatccc aaaggggagc aaattattgc
      241 aaaagcgatt ggtaaaacac cgcaggaaat ttggccctct cgttacgaat aaggagcttt
      301 tatgaaggaa tggtttttag ccaaagaaat cgcaggatta tctggagttc cagaattacc
      361 gaatagcgtt tcaagattgg caaccaaaga aggatggcaa aaacgacaaa ttcaaggtgt
      421 aagaggtgtt acttacgaat accacctcac cagcctaccc attgaaaccc aacaacaact
      481 tagactaaac gccgcccttg cggtaatacc gcaagcggca gaactacaac ccaaacgaga
      541 cgaccccgca cttatcgcaa ggctcaataa tgccaccgat aaaggcaggg ataaagcaaa
      601 aggcaaggca gaagcctgta tgcagttgca agcctttctc gaccaagggt ttagttatac
      661 gcaggcagaa gcgggagcgg caaccgctaa aaatgtgtcg caaggttctt taaaaaattg
      721 gtactacaaa gtgaaaggtc accccgtcca tttatggcag gcgatcttaa tttccgaaag
      781 cggtaggagt aaaaagccgc agctgaaagc caagattact gaagaagcgt gggactgctt
      841 tttggcggat tacctccgcc ctgaaaagcc ggatttacgg gcaagttacc gccgaaccca
      901 agccatcgcc aagcaatacg gctggcaaat agcaagttta cagactttcc aacgccgagt
      961 gttggcggaa gtgccttacg aggtgatttt gctcaaacgg gaaggagcaa atgcggttgc
     1021 caagttagtg ccggcactac aacgcacggt gaaagatatt ctcgcaggag aatggattaa
     1081 cggcgatggc tatcaacaca atgtgtttgt gaaatggcac accggcgaga ttgtccgccc
     1141 taaaacgtgg ttttggcaag atgttcgcac ccgcaagatt ttaggttatc gaacatcgat
     1201 ttcggagaat actgacagca tacgccacgc attaatggat gtgattttta acgtaggcat
     1261 accgaaaacg ctcacgctgg ataacacccg agcagcagcg aataaggcaa tgaccggtgg
     1321 tattgaaaac cgctaccgct ttaaacatac cgagttagac ccgaaaggca ttatgccgat
     1381 tttagggatt gatgtgcatt ttacctcaat tctttatggt gaaggacacg ggcaagccaa
     1441 gccgattgaa cgtgctttcg ggcgaggcgg aattggcgag aaaatagata aacgccctga
     1501 attaagtggt ttctatacgg gcagaaatgc acaagaaacc cctgataact ataacggcgg
     1561 taaagacggt gtggattaca acacattctt gaaagccata gcagcaggga tagaagagta
     1621 caactctcaa accgaacgcc ataccgaaat gtgccgagga gaattgagtt ttaaccaagt
     1681 ttgggagcgg gattaccacc caagcaacgt aagacaagcc agccctgaac agttgcggtt
     1741 actgttctta caggcagaaa cggtcagcat taaacgcaac ggcagtttta cgctgaaagc
     1801 agccggcaaa ctttacggct taactaacgt ttactgggca gaaagcctga tagggataac
     1861 ggataagaaa gtagtggcac ggttcgaccc cgatgactta cacggcaacg tgtatgtgta
     1921 caacctagag gggcaattct tagccgaagc ggtttgccga gaggcgaaag gatttggtga
     1981 taccagtgca agccgtgagc aaggtcgctt atatcagaaa gtagtgaaaa gtgccaaagc
     2041 tcaagccgaa gcccttgaat tactggaagc tcacgaactg gcaagcctcg ccccacaagt
     2101 ggacgtgcct gagccgatag agaagaaggt aaaagaggtg ctggtgaaag aagattttat
     2161 cgtggatttc aacactgtgc gtaaagcaac ggtggtggaa gaaaccgaag agatcagtat
     2221 ttttgatgaa gtgttactga aacaagagaa acaacttcgc atagtggaat aactagcggt
     2281 cagtttttgc aaaaaatttg caaatttttc taaaaaaacg accgcttgaa atgagattta
     2341 aacagggttt aaacgccttt aaggagtaaa aaatgacatt aacagggcaa gcttaccgag
     2401 tgattttcaa ggaactcaaa gagcaacaag agagtgaatt tgaacaggct ttcaagaaag
     2461 ggattgccaa aattcagcag aatcaaactc aggaatccat tctggtaaac cgtgatatgt
     2521 ttcaagctga aaagctaaca ctgctttcac aaaagttgga agcggttgag caattacttc
     2581 gccttgaatt aaatcagccg aattttcaag caaaacttga agactacgct gacgcattac
     2641 gaacaaccat tttaagtaaa gtagccaaat aagagcttta gactcttgaa ggcttaacat
     2701 ctgagccact ttttttactg tcggcattat accgtcaaga tcatcaatag aagttaaatg
     2761 atgaaaagag gaatggtatt cagctaaaca aaaattgatt gtactaagtt taaacaaagt
     2821 aatgcaattt ttcatcacga tggcatttgc tcgttttaac ttaaaaccag agaaggttgc
     2881 acgagcagaa tcaagggcta tttgatgaat ttcatcatct gttaaagaac gaaagagcat
     2941 aaaaacctcc aaacaaaaac aggacaccat tatgacatta atcgaccaaa ttaaacaaca
     3001 catcgccgaa agcggcagtt ctcaggggaa agttgccaaa gaagccggga ttaatgccgg
     3061 ggcgttatcg gcttacctga atgaaaatta caaaggcaat aatgaagaac ttgaagcaaa
     3121 gctgattgct tatttagagc gtattgaggc gaagaaaaga gagtttgtcg aagctccgag
     3181 ttttattgaa accaaaaccg caaaccaaat tttcggttcg ttacgatttg ctcaaaatac
     3241 tggcgtgctt gccattattc acggtgcgag tggcgtgggt aaaacacaag cggctagaga
     3301 gtatcgtaaa cgctatgcga atgtatggtt ggttaccgca agcccttctc gttcctcatt
     3361 aagtgaggtg ttatatgaaa ttgctcttga acttggaatg aacgatgcac cacgccgcaa
     3421 agggacattg gctcgtttaa ttgttcgcaa aatgaaaggc acagcaggtt tattaattat
     3481 tgatgaagca gaccatttac cttacgaagc cttagaagaa ttaaggctgt tacaagaaga
     3541 agtagtgaat gaaagtgaca tcggagctgg tgttggctta gtgctgattg gcaatgacaa
     3601 agtctacacc cgaatgaaag gcggaattaa ccctgctcac gaatatgggc gactttggtc
     3661 acgcagtgcc aaacgcacca gtattcagaa aaccaaaaaa gaagataccc aagcggtagc
     3721 caaagcgtgg gggttgagtg aaaaccaaga agcactcaag gtaatgcaag ccattactga
     3781 aactggtggc ggattacgga ttctgacaca caccttacga ttagcagcga tggtagcaaa
     3841 agaccgaatg attcccttaa ctgccgattt aattcagctc gcacgtaaag atttactctc
     3901 aacaggagat taacaatgag aaccccaaaa cccaaacaca gttttaaccg caccaaccaa
     3961 gcagcgtgcc gttttttaaa acaaacccaa aaggcaatta tccgcttaaa cagtcttggc
     4021 tttacggtgc tgaatattga ttttacccgt attaagcccc gcattgaggt ggaaatcggc
     4081 aataacaagc acattgctca aggcttgatt tatgagggta aagcctaccg ctacagcttc
     4141 ggtaaaagcg aagatttagg cagatgggaa ggctactaca ccatgctgga aggtatcaga
     4201 gtgtggtggc gacaagcagc aattcactag gagaaaaaca gatgaaaacc ttagcactat
     4261 taaccgccct tttagggctt gtagggtgtg atttagtcca aagcaaacaa gctaaaaatt
     4321 acatcggcaa caatttaact gaaatctgta tagataacgt ggtgtacctg atttattccg
     4381 gtgataaaaa aggcggaatt accccgaaag taaataaaga tttttaccct tatacctgta
     4441 caaacaaaga ggaaagacaa aatggcaaaa cccgatgaaa cacccattac aaaagcagaa
     4501 tgtcaatctc agcttgcaga gttgggggtg caatataaaa aactgccaat ggcaattaca
     4561 agacatattt gtaatgccac aaccaatata cacggcaaag ttataaaggt cagtgtggta
     4621 gagagagttg gatatggcgt ccagattacc gcacaaggta acgagaaatc ttgcttagta
     4681 acctatgaag caatgttagg tatggcagaa gcaatgggat tatttgatga agttaaggag
     4741 caaaataatg actaaaaaaa caaccagagt aaaaagtgca acccaaagtg cgatttatca
     4801 aagccgagat gaagtgcaag tggctataaa aatcattggt gataaacagc gtgaattgca
     4861 acgtttagct acggcaatga atgatgaatt agctgctatt agtgccagtt atgctcaaca
     4921 taaccgctac caacattatg ccgagaaagc ggctgaagca gaacgcaaag gcaactataa
     4981 ggaagctcaa gaccattggg aagttgcaaa attatcagca aaaaagaccg ctaaccgaga
     5041 ctgggcggaa caacgagcgg aattttgtaa acgtatgcac aataaaccgt tttaggggga
     5101 agtgatgaca gaaaccgtaa aagcacaact taacagccaa ttaaatgagg caattatcca
     5161 gttgatacaa gctcaaaagt atttaaacca agatgatgcc attcgcagtg gagtgtatat
     5221 cggtacggtg caggatttat tgccaaaggt gcatttaaag ttattaacgg caaatcgtaa
     5281 acattgatag agatgaggta aaaatggcta ttacagaaga acaatggaaa gaaattaagc
     5341 aaaagctaga tagtatcata gggagagtta aatttagata caaagagcat ttactcacgg
     5401 tagatgttgt acaaattaag cgatctttaa aattggctgt gtatgttgat ggggaaattg
     5461 atggagcttg gacaaaagaa ggacacgaaa ttcgccctta tttagaagaa gtttggtatc
     5521 gcaaagaacg cccttttttt aatgctaagg agaagaaaga gtatagaggt ttaatgagca
     5581 aaaaaaactg aatgaaaaaa tagtaaccta ctcacctatg tttccatcac caactgcact
     5641 gactcgtcaa tataagaaac tagatggctt agagttgatt gaagtgattt aaaacccatt
     5701 tacagcccat ttaaccccga gttatttaaa ggacaacaaa atgaataaaa acgaattttt
     5761 taagaaatac cacctagagg gttcactagc tattttggat ttggatgcaa atgacgatca
     5821 aagccaattc tgttaccaag cattgttgga gtatagagaa ctcccgttag acacatttct
     5881 tgcagagtac tcagatgatg aggatatgac agagtcagag tttattgagt taatgcttga
     5941 tgaattagag tggattatcc gcagagctaa gaatgctaaa cggtttgtta aaaaacgaca
     6001 aaaaacgatg agggaggaaa ttatgtaaca gctcaaccca accaacgcca catcatccgt
     6061 ctagctgaga aacaggtgtg gcgtttgttt taagtgggca atcaaaagcg ataacgtttt
     6121 taattgttta tttatcggag taacaaatga cagacaaagc caagctaatc cagcttatcc
     6181 atattgccaa gtcgcaacta gcaatggacg atttaagcta ccgtgaaatg ctgaaacggc
     6241 tcaccaataa aaccagctcg accaaatgca cggtggtcga gttgcacaaa gtcttacacg
     6301 aactgcaaac caaaggagca aaagtaaaat attttgccaa acgcagcaaa aaaccgaccg
     6361 cttacagccc ggcaacaggg gaaacagcgg taaaaagcca aattgctcat aaaatccgag
     6421 cggtatggat aacaatgggc aaacacggat ttttaaacga cccaagcgaa aaagcattaa
     6481 atgcttatat gcgtaaggtt atcaataata aaactagacc aacaatatta ttaaatgtct
     6541 ctgcattaga ggctggagat gcaagttata tgcttgaaat cctcaaaaaa tggcataaac
     6601 gtgtgatgat taaagcccta agcaaaagtt gcacagttga tccaaagata agctacgatg
     6661 aattagtgga gtggtacaat gaagttatgt agatgcccga tttgccacag tgatatacac
     6721 ctagaagctc tcgtagaaga tgaagccggg cgtgaactac tcggcaaaat cagccaatta
     6781 acacacggtg ttgctcaacc gatggttgct tatttaggct tatttaaacc gcaaaaaagt
     6841 aaccttaata actcaagagc cttgaaaata ctcaatgatg tattagcact ctacccttgc
     6901 tcattgctac tggctcaagc cctatctgaa acggtagtaa gcatacgcaa aaaacgtcag
     6961 caagcaatgg aaaacgggca gaaaattgaa ccgctaccga accataacta tttaaaatcg
     7021 gtgtatgaaa cgcaaaaagt ccattttgct gtggtgagaa ccggcaaaac cgaacgcgaa
     7081 acaatgaaag ccgaactgga aaaaacacgc aatgcgattg cctatgtgca acggtttgtt
     7141 gatttaggac gtgaagaggt tgttaaaaat agccctgagt atcagatttg gttagctcat
     7201 aaacccaaat aacacaagcc accaaaaggt ggctttttaa ctttttgaaa gtgcgataaa
     7261 acctgattta aacaggcttt aaacgggttt taagattgag tttaaaaaaa tatttcacaa
     7321 aataagaatg gttttttata caataaccga aacggttttt ggataggaaa tagacaatgg
     7381 aattagtgga tatttttgaa gaaaaagccc cggaagtgtt aaccgattta gccaaacata
     7441 ttgaagtcgc attagaagaa aaatgccaat ttagccccga aaaggcaaag caaatcggta
     7501 ttgatattgc ccaacaaatg gctcaaaact ggggtggcga ggtaatttat attcctcgca
     7561 atttgttgat ggctcttaat gagcgagata tgaaaattta cgaagagttt aacggtaaca
     7621 atcaccgtga attggctcgt aagtacaatg tatcaatgca gtgggtatat aaaattgtga
     7681 agaaagtcca taaggacgaa gttgcccgca ggcagatgag tatgtttgag atgtaaatca
     7741 ttttttccca gccctgatca ttttcagggc tttttgtgta ttaaaagaac gcagtcttta
     7801 aacccgttta aaatcaattt ttcagcaaat tctttaaact ccttttaaag caattttaat
     7861 aggagtgtgc tatgtctcaa aatcttacct ttcgccaaat ttttgaccgt ttaatcggac
     7921 acgagggcgg ctatgtcaat cacccacaag acccgggcgg agaaacccac tggggaatta
     7981 ccaaacgtac cgcggttgct aatggttata tgtatgcaat gaagaatatg acccgtgagc
     8041 aagcctacca aatctacgaa aaagccttct ggcaacgtta tcgttgtgca gagcttaagc
     8101 cagcagttgc ttatcaattt ttcgacgcag tggttaatca cggttttggt aatgctagtc
     8161 gtatgttaca gcgtgcagta ggcgtagcgg atgatggcat tattggcaat attaccctgc
     8221 aggcaattaa tgcaaaatct gaaagcgatc tcttaatgct atttaatgcc gaacgtctga
     8281 agttttacac aaaattacgc aacttcccca cttttggtaa gggttgggtc aatcgtgtgg
     8341 caggcaattt agaatacgca gcacaagata atgaggttta aaaatggcaa aactatttaa
     8401 agaactactc tcaaccaatg gcacattatc caccactagc accgtgcagt tttttggcac
     8461 attgtgtgta tttggtttaa tggtttatgc agtaattacc caacaacctt atgccgaaag
     8521 cctattaaat aatgtgttga tttatctttt tggggcaact accgctaagg gtgtagtaac
     8581 cagctatcaa gccaaaatta aagggggtat ccataaacaa caaagtacat ttaaagagga
     8641 ggagggatgt taatgcaaca aattttaggc gtgattggcg tcatcgcagc aatattgtct
     8701 tatgctttgt ttaaaagctg gcaactaaaa cgtgagcgta aaaagaatgc catattacaa
     8761 gctgaaaaac agcaacaagc ggttgaaatt gagcaaaaaa aagcagaggt aaaatatgtg
     8821 tatatatcaa agaaaaacaa tgaaaaagtt actcgcagct ctgctagcga tattgatgac
     8881 aagttgcagc aacacggtta cttccgtgac aacaacaggt tgcacggcgt tcagtctgat
     8941 ttatccgaac cgtgcggata cgctggaaac gaaacgtcag attcttgctc ataatctgac
     9001 ttttgaggaa atttgccaaa atgaaataca ttaaaaaatt acgtaaacgc tggcaaattt
     9061 ggcgtttttt aaaaaatcat cctgaggttg cacaacgccg agatttatta gcgattgcca
     9121 ttaaacaggg cgtagaaaac cctgtagggc gtgcaagacg gagggagcca taatggattt
     9181 atttacagtc ttttgggagt ctatccgtgc taactttggt tttatttctg cgttactcac
     9241 cattgttgtt acggcatttt ggctcaagct agatagcaaa tacgccaaga aaaatgatct
     9301 tggtgaattg ctggaaattg ccaaaagcca cgataaccgc ttaaccacct tagaaaccaa
     9361 ggtagaaaac ctgccaagtg cggtggacgt ggaaaagctg aaaaccttag tcactgatgt
     9421 aaaaggcgat accaaagcca cctcaaagca ggtggatagt atcagccacc aactcggctt
     9481 gttattagaa gcaaaattaa aggaatgata tgtcgttaag agatttactc actcaagacc
     9541 aacggctggt gattttacgc tcattagcgg aagccggcta tgatgccaat gagtcaatta
     9601 ttagtgattg cctagattta tacggtcacg atattagccg tgatttagtt cgcacccatt
     9661 taagttggct tgaagagcaa ggcttactta ccttagaacg tttgcgagat ggctatatgg
     9721 tggcaagcat tacccagcgt ggcttagatg ttgctcaagg gcgtgttgtg gtaagtggcg
     9781 ttaaacgccc tcgccctaaa atttaaacgg tatttaagga gcgtttaaat gagcgagaaa
     9841 aatactcgtg gtcgagcatc aaaagtcgat ttactgccgc cgaatattaa aacccaactg
     9901 gcgatgatgt tgcgtgataa gcagtactct cagtcacaaa ttttagaaga aattaatgac
     9961 ttaattcggg attgtggctt gcctgatgaa atgctgttaa gcaaaaccgg attaaaccgc
    10021 tacgcaagcc gtatggaacg cttaggggca aaaatccgta atgcccggga agttgccgaa
    10081 atttggacta agcaattcgg cgaaatgcca caaaccgata ttggcaaaac cctaatggaa
    10141 atggtcaagc aaattgcctt tgaaacctca ttgaaattag gcgaacaaga aggcggtatt
    10201 gagccaaaac agcttgcttt gctctcgtct gctattcaac gtttagaaca agccgaaagt
    10261 ttgagtttta aacgggaaca ggcaatccgt aaagaggtcg cacaacaagc cgctgaaacc
    10321 gctgaaaaag tggtggtgca agcgggttta tccgctgaaa ccgtccgtac gattaaagag
    10381 caaattttag gaattgcata atggcactac tcaataacag accgctgaat gaattagccc
    10441 ctgaatgccg ttcgttttta gagagcattc acgcttttaa tcctaacgaa ctgttattgg
    10501 gctatcaaaa gcggtggatt gcggacgaca gccaactcaa aattgccgaa aaaacccgcc
    10561 gttgcggttt aacgtgggca gaagcagcag ataacgcctt aatcgcaagc acccgcaaat
    10621 cagacggtgg ctctgatgta ttttacattg gctcaaataa agagatggca cgtgaatata
    10681 tcgatgctgt cgcaatgtgg gcaaaagcct ttaatcgtgt ggctggagaa atccaagaag
    10741 agatctttga agacgaagat aaagacatct taacctatgt aatctacttc tcatcgggtt
    10801 ttaaggtcaa ggcattatcc agtaatccga aaaacctgcg tggtatgcag ggcgtggtgg
    10861 tgattgatga ggcggcattc cacgaatact tagcggaagt cttgaaggcg gcgttagctc
    10921 tcacaatgtg gggggcgaaa gtccgtatta tttcgaccca caacggctcg gaaaatctgt
    10981 ttaatgaact gattaccgat agccgtgccg gccgcaaacg ctactctgtg catacgatta
    11041 cgattgaaga tgcctgccgt gatgggctat atcaacgtat ctgccaagta gtgacgaaaa
    11101 aaacgtggtc accggaagca gaaaaagagt ggattgaaaa cctactcaac gacaccgcca
    11161 gcgaagaaga cgcattggaa gaatacttct gcgtaccgaa gttcggctca ggcttatggc
    11221 tctctcgtgc tttgattgaa cggcagatga gcgaagccac gcctgttatc cgctttacgg
    11281 caaaagatgg tttcagcctt gtggctgaac cgacacgcta tgcggagatt gccgaatggt
    11341 gtgaattaga acttgagccg atattggcaa cccttaaccc tgatttgttg cattttatgg
    11401 gcgaagactt tgcacgcagc ggcgatatga cctctctggt ggtgcttgct cagcaacaaa
    11461 accttgttcg taaagtcgcc tttattgttg agcttggcaa tatgccctac aagcaacaag
    11521 agcaaatcgt gatgtttatg cttaaacgct taccgcattt tgccggtggg gcttttgacg
    11581 cccgaggcaa tggtggctat ttagccgaag ctgcacgaga tgaatttagc accttgattg
    11641 actgcgtgca gttatcggaa aaatggtatc gggaacacac cgcccccttt aaagcggcat
    11701 tggaagacgg cgagctggaa gctattccaa aagatgcgga tattttggct gatttgcgtt
    11761 catttcaggt ggtgaaaggc gtaccacgca taccggataa acgcactaaa agtgcagatg
    11821 ggaaaagcaa acgacacggt gataccgcaa tttctttgct gttggctcat tatgccagcc
    11881 gacaattagt gcaaatgcca gttgagccgg tatcacgccg tccacgccat agccaacaat
    11941 taacagaagg atattaacaa atgagatatg taccactttg tttaatgatg tgtgcctcat
    12001 tctacctatt tattaacaac attgacggct ggggttgggg aattctttta tcttttattt
    12061 tagcgagtgc agcttatggc aaagaagaat aatttaatta gtgaaattgc cacccgtgcc
    12121 agaagtattg attactgggc atttggctat tatctgccga accctgaccc gattttaaaa
    12181 cgaatgggga aagatatttc cgtttaccgt gagttgttat cagacgggca agttcgctca
    12241 ggcgtacgcc gtcgaaaagc ggcgattaaa ggcttagagt ggcgaattac caccactaac
    12301 aatgagaaag tggacgagca gatttatcaa atatttaacc gcttgccgat gaataacctg
    12361 attaccgaaa tgctcaatgc agcactctat ggctaccata tcagcgaggt tatttgggca
    12421 aaagagggtg agttatttgt gccaacagaa atcattggta aaaagcctga atggtttatg
    12481 tttgacgacg aaaacctact gcgtttccgt accaaagaaa actgggcgga cggcgaatta
    12541 ttaccagatg ataagttctt gcttactacg caagaagcca cccaagataa tccctacggt
    12601 ttaggcgatt tatccctctg cttttgggcg gcgaccttta aaaaaggcgg tttcaaatac
    12661 tggttggaat ttaccgaaaa atacggctca ccgtggttga ttggcaaaca ccctcgccaa
    12721 gctcacaata cagataaaga gcgactagct gatgccctag agggaatgat tagctcagcg
    12781 attgcggtta tccctgaaga tagttcggtc gaaatcaaag atgcagcggg caaatctgcc
    12841 agcaccgatg cctttgaaaa gttcctcaat ttttgcaagg cagagatcaa tatcgcccta
    12901 cttgggcaaa accaaaccac cgagcaagaa agcaaccgtg ccagtgcaca agtaggcttg
    12961 gaagttatgg aagatattcg ctcggacgac caagcgatga ttgaagccac cttcaacacc
    13021 ttgttgcagt ggattgtgaa atataacttc aatgtggaac aactgccgaa gtttgaattt
    13081 tacgagcaag aagccatcaa caccgaccaa gttgaacgag acagtaaact ccacgcaatg
    13141 ggcgtgcgtt tttccaaagc ctactttgag cgtgaatatg gctttgaggc gggtgatatt
    13201 gaggtgcaag cggtcgaaaa agcggaaaaa tctgcaaata ccacagaatt tagcgaagga
    13261 caacgccgaa cccaagtgcc aatgcctgtg ccaattttgg aacagctaga acacgaggga
    13321 gaagcaatgg tggacgattg gctacaaggg gtgagagata aactcgctca agcagatagt
    13381 ctggaggatt tccaaagtca gctagatagc cttatccctg aattaagctt tgccgaatat
    13441 ggcgagctgt tggcgttagg ctcaacggtg gcagagcttg caggcagaca atcggtaaac
    13501 gatgaaatta aggcaaaacg caatgcgtaa atttaccttt aaacagcaag cccaatattt
    13561 tgagaaaaaa ctcaatctcc gcacgaatag ctaccttgat attctgggcg aagagcacga
    13621 ctattttttc gtggtggctg gggcgaatcg taatgaagtg ttgagtgagt ttcgcaaggc
    13681 ggtggatgag gctattcaca acggcgaaac cttagagaac tttcgcaagc ggtttgatga
    13741 ggttgtggca aaaacaggct gggagtacaa cggcggacga aattggcgaa cacggattat
    13801 ttacgatacc aatgtttacg gggcgtataa ccgtggacgt ttgcaacaac atttagagct
    13861 tgcggaggat atgccttatt gggaatatca acacaacgac aacgcccacc ctcgcccaca
    13921 gcacgtggcg tgggacggct tggtgctgcg ttatgacgat ccgttttgga aatatcacta
    13981 tccaataaaa gcctacggtt gccactgcac cgtgcaagcg ttagatgatt ttgacctcaa
    14041 gcacgatggt aaaaccgtca gcccaccacc tgaaattgag tttgaacaaa aaacggtagg
    14101 cgtgcggaca ggcaattcac gagtcgtaac tgtgccgaaa ggggttgatg tgggttttac
    14161 accgcataat tttgataatc tcaaagccgg gagagcagca aatgtagata agttgctaat
    14221 gcaaaaaatg gttaccgccg atcctatatt tgcctccaaa gcagtcagtg atttattggc
    14281 aaaagagccg gttgcaaagt tacataacca agcctttaaa aattgggtaa atgatgttgc
    14341 caatgctaaa ggaagtgcat tatcccaagt agagaatatg cagttgttag gggtactacc
    14401 tgttgcggtg attgaacggt tacagcagat caatttagct ccgcaatctg caattattgc
    14461 aataacaaaa ggcgatatgg tacacgctct acgagagcta aaacaaaata ccggtattgc
    14521 cgtaccgttg gaattttggg aaaagttgcc tgcaaagtta caatacccaa atgccatctt
    14581 gttggaaaaa caacaagcag aaactacatt gctctttatc tatgacgtag ctcaaaccaa
    14641 aattgccgta aaagtcaatt atgatgcaac tttacaagat agacacggag caaaaggacg
    14701 gcagaaagtc ttactgaatc gagcggttac aggtagttta ttccaagata caactggatt
    14761 gaaaagttca aagtatgaag tgctattggg agaaatgtag cggcgaagga ctcgaacctt
    14821 ataatgtagg ttaaacctac aacctttacc aattaggaaa ctaccgctac attgtgtaaa
    14881 ttcactatac ccctaaatta ttttttaatc aataggagaa acaaaatggc agaaaaacaa
    14941 ctttccttta aagtagccga aatagtgcca atgtcagcta ttaacactat gcggcactta
    15001 attagtttgg cattacaagc gaattatgag agagaaaaat ctcgtgcttg ataatttcaa
    15061 tggcttgtag ttcgggaact atattatctg aaacaagcca ttgttttgtt gatgtcagac
    15121 atttagcgat gaaatccata attaaaccat tagcagtagc tcgttgttcc ggagtaagtt
    15181 gtaaccacga cgcctctgtt tgttggtcta atgtataaag aaacataacg gcttcttttt
    15241 ctgataatgg gtcaagtggt aatttttcag cttttgtgac taaccattga cgggaaagca
    15301 ataaatcata aaccagttct attgcttgtt ctgcatttac catcatattc taattcctta
    15361 atatatcagg gcaacattac ccaatctata ttttactgag atttgcttaa tgatcaaaat
    15421 caccctcaac aacacccaag cggtcaaatc gttacaacaa attgcaaatc agctggaaca
    15481 acctcgccga ctgtatggca ttttagggga aaccctaaag aaaattcaca ctgcacgctt
    15541 taaagcggaa caagaccccg atggcaacaa ttggaaaccg ttagccagta gcacgcttgc
    15601 tttaaaacgt aaacgaggta agtccactaa aatcttacgg caagacggct accttgccga
    15661 taaaacggct tacaatgtta caagtgataa tgttgagttt ggctcgcagg aagtgtatgc
    15721 acggttgcat caattcggcg gtaaagccgg acgaggcaaa aaagtgactg taccggctcg
    15781 cccgtggtta ggcgtaggcg ataaagatga gcagttactt ttacgcaaag ctgagtggca
    15841 tttagggcaa attatcggtc gtatgggaaa ataaccgctt aaaatcaaat ttaacgcata
    15901 aaaacgcctc tgtgcgtttt tattttttat tcgcctgatt attcgactca aaaaatttaa
    15961 acgctgttaa acgcatttaa acggtattta aacggtattg ccgattgtga taaatcctct
    16021 ttattaaaac accctcgaaa aatctttaaa ccagtttaaa agctaatttc tctccaaatc
    16081 cttattattg ccccatcacg gaggcaatat gacccaaatt gaaattttta aagccggtaa
    16141 gcgttatgac gccaacggca cgttaattga cattacccct gaaatgttgc aacagaccgt
    16201 tgctgcctat aaccccgaat ttcacgaagc tccgctggtg atcggacacc cgaaatccaa
    16261 caaccctgcg tgggggtggg taaaagccct ttcccttgag ggcgatgtac taaaagcaga
    16321 agtagatcag ctagacgctg agttttcaga aatggtggca agcggcaaat tcaaaaaagt
    16381 ctcggctgct ttttacttac ctgatagccc gaataaccca cataaaggcg tgttatcgct
    16441 acgccacgtg gggtttttag gggcaatgcc accggcggtt aaaggcttaa agcaggtgga
    16501 atttgcagaa gatgatgatt ttgtcgtctt ttctgaatgg ggggttgcaa gtctatttag
    16561 tcgttttcgt gattggttgg tgagtgagtt cgggcttgaa aaagccgata aagctcttcc
    16621 cccacacgaa attgattggc tgaaagaaga ggcaatgcga agccaaatta gcaaacaggt
    16681 acacgccgaa caggcaacac ctgaaccgat ttttaatgaa cccgcacaac cagaaggaga
    16741 acctgaaatg agtgcagaag agaaggaaga gcttgaacgc ttaaaagcgg aaaacgagca
    16801 gttgaaagcc gaaaaagccc aagccgaagc agagaaaatg gaagcagagc tggaagctga
    16861 aaaagctggt aatgcagagt tttgtgaagg tttagtcaag caaggcaaac ttgccccggt
    16921 ggcaaaagcg gcgtttgtgc aggctttaaa taacctttca gtattaaaag ccggtcgtga
    16981 gccggaattt aatgagggcg aagatgtggt ttcacagttt aagtctgcaa tgtcgcaatc
    17041 accacagatt atccaatttg gagaatatgc cacagcagat aaagccaacc cacaagaagc
    17101 ggaagcagtg gaatatgctg aaggcacaga tccagtttcg attgaagccg accaaaaagt
    17161 gcgagcttat atgaaagccc acaatgtagg ctacgctgcg gcatttaatg cgatttatcg
    17221 ctaatgttta acccacaact gaaaaggaat actaatgaca actcataact tacaaaaact
    17281 gcgtgtacaa gaccccgttt taaccgagct ggcacaaggc tatcacaata acgagctggt
    17341 tgccgagacc ttaatgccga ctgtcgaaat cgaaaaggaa gcaggcaaaa tcccaacttt
    17401 cgggcgttta gctttccgat tgccttctac cgtgcgtaac ttgcgtggtt catctaaccg
    17461 tttagatcca gaagatattg gggcgattga tgtggcgtta gaagaacacg atgtggaata
    17521 tgccattgat tatcgtgaag agaacgaagc cattttttct ttacgtcaat ttgccttaaa
    17581 taccacccaa gatgtgattg cgttaggtcg tgaaaaagcg gttgcaaccc tcgccttaga
    17641 tgaaagccgt tatgaaacag acaataaagt cacgctgtcc ggcaccagtc aattcagcca
    17701 taaagatgct gatgtgttta aggtatttga taccgctatt cgtgccgtga agcgggctat
    17761 cggtcgtaaa ccgaatgtgt gtgtgatttc cggtgatgtg tgggcagcgt taaaagaaca
    17821 tccggcagtg gttgaaaagc tcaaatacag tcaagtagcg attgttaccc ctgaggtgtt
    17881 tgccaaactg atcggcattg agaccgtaaa aatcggtgaa gcggtgtatg aagaaagcgg
    17941 tcagctcaaa gatatttgga gcaaagatat tgtggtggcg tatgttgctc ctcgttcgac
    18001 cggaggcaaa ggcacggttt acgagccgtc ttatggttac acggttcgcc gtcaaaaagg
    18061 cttatttgtt gatacttata aagagagtgg cggcaaaatt gaagtggtac gcacgaccga
    18121 tattcacaaa cctcatttag tgggtgcggc agcaggctat ttaattaaag ctgccgtata
    18181 agccacatac catagggtgc gtttactaac gcaccattat ctcaaacaca ttacatagag
    18241 gaaaaaacga tggctaaatt tattgtttta cataccccaa ttttacacga tggcaaacgc
    18301 tatgaggtgg gggcagaaat tgaactcacc gctgaacaag ctgagaacaa tgcgatcaac
    18361 ttaaaagcgg tagaagctgt tccaaaacca cctaaaaatg cctcaaaacc tgaagatgag
    18421 ccaaaacccg aaggtgaacc taagcctgaa gatgcagtga cggaagatga tgtgaagctg
    18481 gctgaagcaa aaattgcaga agcagagcaa ccaaaaggga ataaaaaata atgtatgtgc
    18541 agattgatga gctactcacg gcgtttagtc gcaagattgt ggtgcagctc agtaatgatg
    18601 aaccgacagc gaccgagcct gatttaaaga tgcttgaaac ggcagttaaa gtggcaaatg
    18661 agcgaattga tgcagcgtta cgctctcgct ataccttgcc gctggctgat gtgcctacgc
    18721 ttattaatca gcacgcatta acccttgccc gttattggct ttatgcccgc cgtcctgaaa
    18781 ccaaaatgcc ggacaccgtg aaggaaacct accaacaagc ggtgaaagag ttggaacaga
    18841 ttgcaacagg caaactgcat ttaggcattg ctgaaagcag tcaaatttta gaagacgatg
    18901 ttttagccga taacagtgaa tatgaagttc gggcgaacgc tcgcattgat accagtcgtt
    18961 attaaagatt atgtcagcca cacaaccgat tttagaagat atttgccaac acttgcggca
    19021 agcattgccc gagtgggagg tggaactctt cccgaatgac ccaagcacct atcatctctc
    19081 gcacattaac ggtgcggtgt tgattagcta tttggcaagc aaatttgaga aacctcgcac
    19141 tacacaagcg gtgctgcagg ttcgccacgt tcagattgct ttaacggtgc tgacccgtga
    19201 tttgcataat gatgtcgggg cgttggattt gctggataaa ttgcggttat tggttgtggg
    19261 gtttaagcct caaaactgcg gtgagtgttg gttgattgat gaatttttta atggctcaag
    19321 cgaagaaacc gggctttggc aatatcagtt gattttgcaa accgaaactc agcaggtgca
    19381 acaccaagcg gtcgaaaatc tgccaaaatt tgtaaccgct catcttcgcc gtcaagacca
    19441 gcctggttcg cccggactta aaacttaaat cgtagggtgc gtttgctaac gcaccatcaa
    19501 catcacctga ttttacggtg cgttggcaaa cgcaccctac aaggagaata ttatgacgtt
    19561 tcaccacggt tctgaaaccg aacgagtaaa cggtggctct gtgccggtat cggtggttga
    19621 tagtgccatt atcggcattg tcggtactgc cccaatcggc gcagttaatg aattgaccgt
    19681 ctgtttaacc aaaaaagatt ttgccaaatt cggcacgatt ttaaaccaag gcttcacctt
    19741 acctgatgcc tttgatattt tagctcgtta cgcagcgggt aaagtgtatg tggtgaatgt
    19801 gcttgaccct tcccgccacc gtactaccgt gaccgatgaa gtcctcacac tggatcgcaa
    19861 tacgctgacc gctcaaacag cgaaaaccgg cattattgcg gtgacgagag tgaaagacgg
    19921 tgcaaacgtg ctgaatgctg atcggtattc ggtcgatctg caaaccggcg tggtgacctt
    19981 tgtctctgca ccgtctgccc cgaaaattag ctatatctat gctgacccga gcaaagtgac
    20041 cgaagaggac attaaaggcg gggtggatag cttaaccggt aaacgcaaag gttttgaact
    20101 attgcgtgat ggttttaacc tttacggtgc ggatgccaaa atcttaatct gtccggaatt
    20161 tgataaaacc gcaagctgtg ccgctgccct tgccaccctt gccgaccaac tgcacgctaa
    20221 ggcgtatatt caactgccga aagggacgag cttatcaaaa gctattcaag gacgtggccc
    20281 ggcagggacg attaacgcct cggcaagcaa tgagaacgta cgccatttct tcccgtatgc
    20341 gttggggtca agcaatactc ttgaaagcct tgcgacccac gccgccggtt tgcgtatgtt
    20401 gattgatgtg gagaagggct actggttcag cacttccaat aaagagctga aaggggtgat
    20461 cgggttggaa attccgctga cggctcgggt ggacgataag caaagcgaaa ctaatctgct
    20521 caatgcggta gggattacca ccattttcaa tagttttggc acaggcttcc gcttatgggg
    20581 caaccgttcg tctaacttcc cgactgtgac ccatatcagc aactttgaag tcgcctctcg
    20641 cacaggcgat attattgatg aaagcattcg ccaagccgaa ttgcagttta ttgatttacc
    20701 gattgatgat gcgttgctgg atagcttcct tgaaaccatc gacactttcc tgcgtacgca
    20761 gaaatcgttg gtaggttatt cggtgagctt agactatgaa tatgacttgg ttgatgcatt
    20821 cagccgtggg caagtcccga ttgtgtatga atacactcct aaaattccgg gtgaacgtat
    20881 cagcaataaa tctgtgatga cccgtaaata cttggcaaac ttggtgtcgc aacgataagg
    20941 ggaaataaat gagtattgca attaaccaaa ttgtaaacgg aaatgtttac attaacggca
    21001 acagccaaat ggggcgagtg aatgaggtca aaatccccga tattgagttt gaatttatcg
    21061 aacacaaagg ccttggaatg cacggtgtga ttaaattacc tgccggcacg aatgcgattg
    21121 aagcagaaat cacttgggac agtttttatc cggaagtgcg tgcggtaatg cttaatccgt
    21181 ataaatacac tcagttgcaa atccgctcta acctgcaagt gtttaactcg cagggcttgg
    21241 cagccgaaga gccgatggtc accattatga atgtgtctgc cggtaaaatc ggcggcacag
    21301 ggcataaaaa caaagaaaat gccgaatttg ccgacacgtt aaatgtacat tcaattaaac
    21361 agaccgttgc cggtcgtgag ctgttattta ttgatgtgct ggcgaatatc taccgtgtga
    21421 acggggtgga tgtgttgcaa aaattccgca ccaatatcgg ttagtaaaat ctttaaagcc
    21481 gtttaaaatc aatttaaaca ccgtttaagt aaactccttt gtgaagttaa acaacaacca
    21541 ctcacaaagg agttttttta tggctaacgc agctcaacaa gtattaacca atcttcgtgt
    21601 acaaaccact tataaattgc aataccctat cgctttacca gatggtagag ttattgaaac
    21661 cttagatgta cgtcgtccaa aaggtaaaga ttttcgtttg cttgatgaaa aagggtttga
    21721 ccctgaaaaa gatggcgtaa aaattctacg cttctatatt caacagctca ccacacttgt
    21781 gccggaagat attgatgaac tcgatgctgc cgatattaag ggcttaaata acctattgga
    21841 agatatgctt attgagggaa agtccgacaa ataagtgaac tagataccgt ttatgctgat
    21901 ctcgcttggt ggtttaagtt ttcaccaagc gagcttttag aattggattt agtggatatt
    21961 ccgaaatggg tagaacagat gaacaggcaa ataaaagccg gttatgggca gattttacgg
    22021 tagagccaaa taaagggttc ggtggctaaa gtaagtaaaa tggcgacgcc ccaagctaga
    22081 tacacaccaa cccacgccaa gattgtcaaa atcaatccat aaatgagtac aaaactaacg
    22141 ccctcgctta ggctttgtat agattgaatc gcatctaacc agtagaagat actccaaccg
    22201 actaatgcta ccgctaacaa ccatttagcg gtgcattctg ttcttgttac acaagcctcg
    22261 aaaccagccc actcagtaat tcgattattt aatttagtca gcatacacca cctccttaaa
    22321 ctttccctat tttacgctaa ggatttaacc aatggcaaat aatttagcta tcggaatggt
    22381 aattggtgca agcctatcat caggttttca cggtgctttt tcaggagcaa agaaaaagct
    22441 agaacaatta gaacaggctg tcgctaaaaa tcagcaaagc cattctaaat taggttctga
    22501 gcttactgca ttgcgtagta aacaagctac tctctatgca gaaatgagcc gagccagtag
    22561 taaaggtggt gctgggcttg ctcttatgca acaggaatat aaaaaaattg gcaaagaaat
    22621 tgccaatatt agccgagagc aacgcaaatg gagtacagaa ttagaaaaat ctattgctaa
    22681 gcaaactaaa ttacgcaatg caatggaacg tcatacacaa gctaaagaaa accgagacga
    22741 gcttaaaggg aaaataattg gaacggtagc ttctgcggca atgggtgtcg gcgtgatgaa
    22801 aacctatatg gagcaagaag aagctgcgaa taatcttaaa atttcaatgc tgaaagcaga
    22861 tggttctttc gggaaatttg aagagattgg caagattgct gacacattag ggacagattt
    22921 accgggaaca aaaaaagatt tctacaagct cgcaatggca ttaaagaaac aaggtgtttc
    22981 tgatgatgtg ctgaccggag gggcattaaa aacttctgcc gaactgaatg tcttgcttga
    23041 tatggatcag gaaagtggtg gagagttttt agcgaagttt atggaatctc accggctcaa
    23101 tgaaaatgag ttaccacaag cagccgatta tctgcaacga gcaatgtttg ccggcggttt
    23161 aagtaaagag cagatgtatg aatcgatgaa atactatgct ccaaaactga actcaatgaa
    23221 acttacaggg gctgagaata ccgaaaaagt gctggcgatt gaagcaatgg caggtcagca
    23281 aggcttagag ggttcaacct ttggtacggg cttaaatatg atgttaagcc gtatgaataa
    23341 aggaccggaa atgctcaagg cagcagccaa aggaatgaaa gccgaagctc gagagatgat
    23401 ggaggctgtc ggagtagaat ttaatttctg ggataaaaac ggctcattca aaggcattga
    23461 tggaatgctg gctgaaatga cgaaatttga aaaaatccgc aaaaaattcg gtgacaaagg
    23521 tgtaggttta gttgcagaag agctgtttgg cattgaaggt gggcgtcttg ctgatatttt
    23581 ggctatgaaa ggtcaaaaag gcttagatga aatgctgagt aaaatgcgtg aacaagccag
    23641 ccttcaagat cgcattaacc ttaaaacaaa tacattaggt gctgccctag aatctttagg
    23701 aggagcgtgg gaaacctttg tgggggatat tggctctgtc tttgccgaag atataaaagg
    23761 gttttcaaaa ggcttgcaat ctgcggtgga atggcttgtg ccatttgtat caaaacataa
    23821 agaggcgatt aaatttgtag gtggtttggt tgctggactt gttattttac gaggcgtttt
    23881 acaagctggt tcttttgtta ttcaaacggt aactatggca atgaacgccc tcaaaattgc
    23941 agcaatgacc aatcctattg tcttagtcat tggagcaatc gcagcgggtg cttacttgat
    24001 ttatagccat tgggatagca ttgccccttg gtttgcaaat ctttggcaaa atgtgaccgc
    24061 ttacttcaat caattttgga cttgggtaaa aggtgtttgg tcgggcgtga cggactgggt
    24121 gtcttctgtg tggaatggtg tagccacttt tttcgggcag ttatggacta cgattactag
    24181 cttatttagt gtagcttgga caaatatcca aacaatatgg ggaggagcaa cagcttggtt
    24241 ctctggttta tgggatggga ttaagtctgc ggcttttggt atgttcgaca gtattagcca
    24301 aaaagtcagc tctgttgtag caagcattaa gagcttttta ggctttggcg atgatgtgga
    24361 taaaatgggg gcaaaaattg gcaatgtagc tacccaagtc atcagcaaag aacactcagg
    24421 acaactcagc aaaaccgcag atatggcagc caatacaggg ttctctagcg gtggtttcac
    24481 cgggcaaggc ggtaaatata cccctgccgg tattgtgcat aagggcgaat atgtgatgac
    24541 gaaagaagcg acctctcgtt tgggtgttgg aatgctggat agcttaaact atggcggtgc
    24601 tatgggtttc actcaacctg ttttgcaacc gattttaggt aagcaaaaag gcttttttgg
    24661 ctcactttgg gacgatgtga aattcggggc aaactttgtc ggcaatctgc ttggcttaaa
    24721 tcaaggcagc ctgaaaacgc ctgattttaa cccaaatgcg accaatgcaa gcggtcaaaa
    24781 ttcgtcgatt tttagcaatt atgaaccact caaccgaaat gcggtaacac agcaggaaag
    24841 ctcgcaagca ccgcagatag tcgtgaactt taacccgaca atcaatgtaa acggtaatgc
    24901 tacgcaagag gctcaatcgc aaattatgca gcagttgcaa atgagtgctt atgagtttga
    24961 gaaattgctc aatcgtgtgc tagaccaacg aagccgtaga gcctattagg agtgatttat
    25021 gtattttatg ttaggcaata ttgcctttga gccggtgaat ttaactgaat ttagcgagca
    25081 acataccgcc gaatttgccg aacacgctgt gctaaaaggc aaacctcgtt tacaagcgat
    25141 gggcgaaaag ctaaatgaac ttaatttttc tcttcggttg caccatacca taggcggtgt
    25201 agagagccgt tatcaagcct tgcttgaagc caaagcgaag caagcggcat tggcgttaat
    25261 ttggggcagt cgttataagg gagattatgt aattgtcgat atttcatcga ccacattgtt
    25321 caccgatggc agaggcaatg ccctcgctcg tgaaatgcaa atcagcctga aagagtttgt
    25381 gggcgataat gacggtggtg tgttgggtga ggcgttaaat tttggtggtg gctcactgct
    25441 tggctctatt ttgccaagcg gtgcggtaac taccctatct caaatcaaaa cagcagtcag
    25501 ccgaggtgtg gagctttata acagcggcaa acgcttagtt gacgaagtgc aaaataccgt
    25561 ggcgattatt cggcagttga aaaatgaccc ggcaactgca ttggcatatt tacccgctgc
    25621 attagcgaat ttagacgggg cattggggca ttttggtaat ttgaccggct catcggcgac
    25681 cttgggcggt ttgcaggaga aactaccggc agcagtggtc tttagcgagg aaatcggcga
    25741 gatttatcag agtttgcaaa caatgcgaag cagtttgggt aatgcctcgg caaatagctg
    25801 ggataattgg tttacaccgg cagagagtgc attgacagag gtcacagaca gctttgacca
    25861 tctagcaaaa ccggtggcaa aaatgaccgc ttggattgtg ctgcgtaccg atgaggaggc
    25921 agaaaatgac acagttgctt aaacatatcg tcaaacaggg tgagcgttgg gataacttga
    25981 gctatcaata ctacggcaat gcgtttgaat atggtcgaat tattgatgcc aatccgcata
    26041 tcggtttttg cgaggtgttg ccgatagggg taacaattta tatccctgta cttaacgtta
    26101 agccaacgaa taatgaaaat atgccaccgt ggctaagggg gcgtgatgcg taatgtaccg
    26161 aagcccgatt tttcactgtt ttatgaaaaa accaatatca ctgccgagat tgagccacat
    26221 ttggtgcaac tgacctatat cgaccatttg gaaggtcaat cggacgaact cactgtggaa
    26281 tttgaagaca ttcaaggcaa atggatacgc caatggttcc cgactcaggg ggataagctc
    26341 aaagcggcga ttggctatca gggcgaattt ctgacggaca tcggtgagtt tgaaattgat
    26401 gaagtggaat atagttataa gccttccact attaacttaa aagctctaag caccggtatc
    26461 agcaaagcca accgtacttt aaaaccgaaa gcctatgaga atacgactct tgctcaggtg
    26521 gtggcaaagg tagcagataa cctgaaatta aaggtagtcg gtaagattaa ggctatcccg
    26581 attaaacgga tcacccaata tcaagagcgg gacgtggagt ttttggcacg ccttgcccga
    26641 gagtatcatc acagctttaa aatcgtgggc aatcagctgg tctttaccga taaaagcgaa
    26701 ctggggcaaa gtgagccggt gttaatgttg gaagaacggg atactatttc cctacgtttg
    26761 cgagatcgga ttaaagacac tgcaaaggca gtggaaatca gcggctatga tacaagcggt
    26821 aaaaaagtgg tgaaaaaacg caaaaaggca aaagccttac gcccgaatat aaaacaagct
    26881 aaatcagcca gtgaagatac gctgaaaatc atcacacgag gcgaaagtca agaacagatt
    26941 gatgcacggg gtgaggctgc gttggctacg caaaatgaag atcaggcggc tggtgatatt
    27001 gagcttatcg gcaatcctaa attggttgcc ggagcaacga ttttattgcg taactttggc
    27061 gtgtttagtg gcaagtatct gattaaatca tcacgccata cgattagccg tagcggtggt
    27121 tatactactc atattgaggt cagaatgttg gagtttattg ccgatgattt aatcacatta
    27181 ggtatggagg ctggcaatgc aaacgcataa ttttggggcg acttatcaag aagggattgt
    27241 atccgctgtt gatccgaaaa cgcacaaagt gcggtgtaaa atccctgcgc tggaagattt
    27301 agaaactgct tggctgtcgt ttttgacccc gaacgccggt ggcaatcagt tttactgttt
    27361 gcccgatgtg ggcgagctgg tggcaatgct acttgatgca caaggcgaag gtggctgtgt
    27421 gtttggggca atttataacg agcaagaccc gacaccggtt gccgatagcg atatgtgggt
    27481 taagaaattc agcaatggca cggagatttc gcataatcgc aaaaccggcg atgtggtagt
    27541 gaagactaac gggcatttaa ccgcaacggc tcaaggtggg gctacgatta atgcaaacac
    27601 cgtagtcaat ggcacattgc acgctaccgg taaaatcacc tctgacgaag aagtctctgc
    27661 tcctgttgtg aaacaaggca cggtagagct tggcacacat aaacacggcg gtagccctga
    27721 acctaataag taattcttta aaccagttta aaatcccttt taaagatagc cctgtatcat
    27781 cagggctatg aacagacaaa cttccattca attaacccac tggcaacttg caccctcaac
    27841 cgatacagtt gaggtggtgc aaggtattga tgatattcat ctttgtattg tcaatatcct
    27901 ttcaacccaa aaaggcacgg atattttacg ccctgaattt ggctctgacc actttcgcta
    27961 cattgactac cctgaagatg tggctatccc gaattttgta cgggaaatta caaccgcctt
    28021 gcaaaaatgg gaaaaacgca ttgaggttga agaagtattg gtggacggtt cagctccgca
    28081 ttttattttt actgtgatgt ggcacttaac cgatgatgtt tatcgtgaaa tttaccgaac
    28141 aacggtataa ggataggcaa tgacagaagc gattaaaatc attgatgacg atgtaaaaac
    28201 cgtacttgcc gaagcgattg ccgattatga aaaacgcacc ggtaaaatct tacaacctgc
    28261 acatattgag cgttccatta ttcaaaccta cgcttaccgt gagcagttat tacgcaaagg
    28321 cattaatcac gcctttttac aaacctttcc gcagtttgcg acggggattg cgttggattt
    28381 gtgcggggaa acttttggtt gttatcggct tagagataaa cctgcccgta ctttactacg
    28441 cttttcagta agtggtgaac atacagctat agttatccct aaaggaacgc aggtggcaat
    28501 taatgacgag ctatactttt caacgctcaa tgacgatgtt attactccat taattaccta
    28561 tgtggaaatt gatgcagagt gtaatcaggt tggtgttatc ggtaatggtt gggaatcagg
    28621 aagagtcagt aaactaaaaa cagcactggc aactaattat aaagtaacag ttgaaaacat
    28681 tgatattacg agcggtgggt tgatgcagga agaagatgaa ccttaccgta agcgaatttt
    28741 agccgcaccg gaagccttta gtaactgtgg ctctatcgct gcatatgatt accacgtccg
    28801 ctctgtatcc caagatattg cagatgtgaa tatctctacg cctaggggtg gcttggtaag
    28861 aattgcggta ttgacccaaa aagggttacc ggatacccga ttacttgatg atattaaaaa
    28921 acacgttagt gccgaacggc tacgcccact ttgcgatatg gtcgaggtta ttaagcccac
    28981 agaacgccgt tatcaaatta cggcacgttt aatattgtta gatggctacc gtgaggattt
    29041 ggtaaaagca aaagcccgag aggcattaca actctatttg tcagacaaga ctaaaaaact
    29101 cggtttagac attgtgccgt cggccatcat ttcagcttta agagttgagg gtgtttacga
    29161 tgtgaattta attcagccag tcaaaactat tatcaacgaa acagaatggg cgaactgcac
    29221 agcaatcagc gtagaagtcg aagaggagcg tagagatggc tagcttgcac tatgcggaca
    29281 ttattgtgcg agaccctaaa tataaagcat tagcggattt aagcaagcgg ttaaatttgc
    29341 tcgatacttc gcaaattatg actacgctgg tggatttatt gggcgacgaa tgtatcccat
    29401 tgctggcaga aaaatggtcg gtaaccggct atgacggctt attggttgca gatagcgaaa
    29461 actcaaagcg agccttaatt aaaagagcaa tcgaactaca tcaactaaaa ggcacgcctt
    29521 ggtcaattcg tgaagtatta cgcagactag gtttcggaga ggttgagatt gacgagggac
    29581 tgaaaaatcg gctgtatgaa agcacttatg tgagcggaat ccccgaaaac gaacgctggg
    29641 cgcactatgc gattaggttg agtaacccga ttaccaatga gcaagctcgc aatatccgta
    29701 aggtcttacg caattttgct ccggctcgtt gctctcttgc agttttggat tataaagcag
    29761 atccaattcg atataacaat aaagcaacct acaacggcac atataaccac ggttcaagtt
    29821 aaggataaat tatggcaggt gtacaagaaa ccgcacagtg ggaaaaccac gtttacagaa
    29881 ttgaagaaaa tgacccagtc cacggaggag aaaacggtgt aaccaataag ccaattaagc
    29941 acctagcaaa ccgcacgctc tatctgcgta gattgctcac cgaggcagga caacgcatta
    30001 acccgaaaaa aatcacagct accagcaaaa atagtaatga tttaactggg catactcacg
    30061 agattgacca cgcaagccta acgcaaaaag gcattgtgca gttaaatgcg agtatccaat
    30121 caactagcac aactgagtct gcaacccctt cagcagttaa agcagcctat gataaagcag
    30181 caacagcaga acaaaaagcg acattggcaa atgagaaagt cgaggcgatt aaagtaggcg
    30241 gacgaaacct cctcattcaa tccaacactc cacacaacgg gaatgcgtac tcagtcagat
    30301 acgcattggc tgaggctccg aaagtaggcg aagagattgt agtcactcta tggggtgaac
    30361 tcggctctca acgtactgga attggcgttt acaactctca aggtgctacg gagttggcaa
    30421 aactggtcaa aattcgtgat ggagtttatc aaggtaaagg catttggcgt aagccgatga
    30481 gtgagggacg agagcgaacg cctaacgaca cgcacctgaa tgtgtatttt tacccgaaaa
    30541 ccgcaacaga taataaccgt attgagcgaa tccagcttga gcgaggctca atcggtacag
    30601 attggacgcc aaacgaggca gacttaaagg cagagattag tgcaatccgc actaaactaa
    30661 tccctgtacg gggtggcaat gttgctacaa ccttaaatgc ggctaagcgg tcggattggt
    30721 ttagagaaat gcaaatccct tatcaaagtg gttgggggta ttacacccaa gcatttcata
    30781 actcagggac gcaacacaac tacagcaatt taccgctgac aggtcgttat tattttatcg
    30841 ccgaactcta tcataactct ggttattctc acttgcgtat cacctatcca agtttaaaac
    30901 gcacctttga gagtgctatc aaccttaaca atgaggattt gattctagat tggcgtgagg
    30961 tggtgttttt aaaagatgga ttgtatcaag gcacttttaa aacaacaggc acactagagt
    31021 ctgcttatcg tctaagagcg gctcgtgatg atgaacgtta tcagccatac ctgcaaatgg
    31081 tcgatatggg ctatgacctt gccaatcccc cggtaggaaa aaacaaaatt attggcagtg
    31141 ttgattatta cgttaaaaac ggcacaagcg agtcttccaa agcgacgatg atggcagcgg
    31201 caatgcctga caagaacgta ttttgggaag tagcattgtg gaatgcagca cagcaacgga
    31261 atgtattgtt taaggggtat agcaagacta acaatttgag tattggtaaa accaccgaca
    31321 atgagcgaga ccgagtacaa gtcaatggca caatccaagc caccgcaccg gctgataacg
    31381 ccaataacga ccaagtgccg actacggctt gggtgcgtaa gatggcaaag attttagctg
    31441 atggcaaggt gagtaaagcc ggtgacacaa tgactgggca tttattcatc aagaatgggg
    31501 aatactctgc ggtacatacc tataacacaa gtggttggtt cgcaaaatgg gaggcggccc
    31561 cattatctga ttcgcacttt gctgccattg tatatgccaa cgacagagag acagttatca
    31621 atcgggtgtt aattcccaag aagaatggca cagtcgcttt aattaatgat attgccgata
    31681 ccgttagagc cgctgtgagt cgtagtgata aatcccgtag tagaactttt cctctgcaaa
    31741 cggggaaaaa atatacaacc acagggagcg ttacgattta tccagatggc cgaattgtgc
    31801 agattttcca cttaaaaaat attaaagcgg cgtggtttga ttatgaggca agtgcggtag
    31861 gagataggca tagagttgtc aatatccctc tttggactgc gatgccaaat aaaatttttg
    31921 atgtcgatgt taaaactgtt cgcccctcaa ataatgcctc aacttactac atagaagcgg
    31981 ctgaatggct gagtgcgtgg cagatttacg gtaatgacac gaacaaatca agtgtcaata
    32041 ttaatctatc tcgattcaga ggtggaaagg atgaagatat ggacttgtat gtaacagttg
    32101 agggatatta aatggcatat tttgtgaatg tgattgatga gcaaggcaat tatgagctaa
    32161 ttgatgatga gtttattggg ctgtatccgg atttggattt taacacatta cccaaactca
    32221 cggataagca atatcagacc taccttgcca aagcaaacgg caaagagcga tttgtaaatg
    32281 gcgaatttgt gtatgagcaa attaaggtgg atatgcaagc ggtcatttcc gctgaaaaat
    32341 ctgcaaagtt agcagagatt aaccaaaaag cacaagcctt tatcaatgat ttagccaaat
    32401 acaacgaaac gcctaagttt gagcgtgata cttggcttga gcaagcgaaa gaggcaaaag
    32461 cgtgggtggc tgacccaacc gtacaaacgc caacccttga gttaattgcg caaatgcgag
    32521 gcataccgct cgacacgcta cgccaaaaag cctacgaaaa agcgatggcg tatcaaacgg
    32581 tggctgctat tgtagcaggg caacggcaag gatacgaaga ccgcctagaa caagcggaaa
    32641 ccttagagca aatacaggcg attgagccga tgtatcaatt accgcaagga gcaaacaatg
    32701 agcaaactga ctaaattaaa atcgtggagc taccacgtct taattgcaat agatcaactc
    32761 tttaacgctc tcaccggtgg agcagcggac gaaacatttt ctagccgttg ctaccgtggt
    32821 gcagtgcttg cggaaaatcc gaaaaaacgt tggcgttttt ggcactcttt tttgaattgc
    32881 ttatttttag acccaaagca ctgctacgcc gcttataaag cggaggtaca ccgcaagcag
    32941 tatccgaagg catttagact tggggggatt taatgaaaaa gcaaaactta aaattagtgc
    33001 ggggcgatga tgtgagtttt agattcagca ttaaagacag caccggacaa cctcttgcgt
    33061 taaaggattt gtggtttgat ttgcacttag tcagctatca aggtgaggtg ctgattgctc
    33121 tctctactga tgatggcagt attgagacag cagaggctgg tcagatggtg ttacatttta
    33181 gtcaccagca aactgctcga gctgaatgga caagtgccaa ttatgacttg caactcacgc
    33241 acgactatac aagagtctag gaggtggaga tgacctctat cattgaacta gacctgactg
    33301 atgacctcat cattgaggtg cagttagata gcacaatcat taccggcgat agctttttag
    33361 ccaacctgcc ggatttactc caaatttaca accaagcaaa gtcagatagc agtaaggagc
    33421 ttaacaatga ctaaacacaa aaaccacgaa aaccacccga ttgctataac attctaccaa
    33481 cttggcaaag atgtcggcga cattaaccgc cggctagcgg ttattgagca acgtgagcaa
    33541 tcagcacagc caagccaacc acaagctgag gcggttacaa tgccacagca agatgctgtt
    33601 gccattaata acatcaatgc cgttttggag gcggtcgaaa aatacaaaac ttttgaaaaa
    33661 tacaacactc agtggcaaga gcgttttgaa aaattcctgt ctcgtaaccc gaatgattac
    33721 gagttaagtg aagagcaacg ccaaaaactt taccacacga tgtgccagca tttgtggcag
    33781 gtgaacttta ctgaaatcaa tagtaaacag tatgaattac cgatcccgca acaattccag
    33841 ggtaagtttg gctatattgt caaaacctcg ggcggtagca cagaaattag ttttgagttg
    33901 ctatctgaaa ctcacagcac ttatctttat ccggatagct atattcccga gggcggtggc
    33961 gatgtaatgc tcaagccggc ttatatttat ttagtgattc cggacttagt ggcaatgcgt
    34021 gagccggagg tggtgggggt ttcaccgctg aaactgaaca ttctgcagaa acacctgctg
    34081 acacctcaga aactacagga gcagaagccc ttgaacacga aggcaaactg attgatggcg
    34141 tatggcattt tgagcgagag ccggtaaatc caccgagaga tcagaattat tatgtggcag
    34201 gtaacctgtt ctacaacggc ataccggatt gataaattga tgtttcagta aacctaatta
    34261 ggggggaatc cccctttttt attattataa ggaaagaaaa tgaataaatc tttagtagcg
    34321 ttagctgttg cagcgatggc atcgaaagca caaactaaac agcaagcaag caagcaagca
    34381 agcaagcaag caagcaagca agcaagcaag caagcaagca agcaagcaag caagcaagca
    34441 agcattgtga gatagagaaa gtatttaaac aagctccttt acccttttca gggcaaaaac
    34501 ggatgttttt atcccatttc aaacaggtgt taaatgcaaa tattgaagca gacgggaaag
    34561 attggactat tatagatgtt tttggtggga gtgggttgct tgcacatacc gcaaagcgtg
    34621 agaaaccgtt agcaagagtg atttataatg attttgataa ttacgccgaa cggctaaacc
    34681 atatcaaaga gacaaatcaa cttcgccaag aaatctacca aattgttgat gaaattatac
    34741 caaaaaataa gagaattagc aatgaaatta aagctaaaat catcaataaa atcaatgatt
    34801 ttgaggggtt taaagacctc aaatgcttaa gttcttggtt attgtttagc ggtgagcaag
    34861 ttgcaacttt agatgagtta tttaagcacg atttttggca ctgtgtgcgg caaagtgact
    34921 atcctgaagc aacgggttat cttgatgata ttgaggtggt tagtgagtcc tttcatcaat
    34981 tattgccgag atttcacgac aaagagaaag tattattgat tcttgaccca ccttatcttt
    35041 gcacaagaca ggaaagctat aagcaggaaa attactttga tttaattgat ttcttacggt
    35101 tgatagacct tactaaacca ccttatatct tctttagctc aaccaaaagc gagtttattc
    35161 gctttattca ctatatggtt caaaacagaa aagaaaactg gcaagcgttt gagggagcgg
    35221 aaagaatagt ggttaatgcc tcggcaagtt ataacggcaa atatgaggat aatatggtgt
    35281 ataagttcta aaaatttaaa cgccctttga tagtgattta aagggcgtta aaaaaccatt
    35341 aaaattaaga aagtaaagct cctgttttct ttcgtagttt tcgtggttgc gtttcgcagt
    35401 tttgttggct cgctacaatt actgttcatt gtaatgttta atcgaccatt ggttttgcta
    35461 ggatcagttt caccaaaata accgttaaaa ccttggacgg tgccttctgc tgctttgatt
    35521 ttttcagcaa gtatttgttg ctttgcagca ctttcatctg ttaccttgag tacttcaaag
    35581 tattcgtttt cacgaatgag accagtagca aagtctaaat cgatgaaaac tttacgcgca
    35641 ttaaaaatag ctgtgatctc tgcaacgctt aaaggttttt tcaaacggat aaaattagtt
    35701 ggcaagtgtg gaaaacgttg atatgtgaaa atatctttgt ccaaatgacg agaaacctga
    35761 tctggactag taattgcttg aactttcact tggtcaattg ttggactaac tatgccggtt
    35821 agtgtaatgt ttgctgtttg ggctgtatta tgattgacaa ccatcgctcc ttcatcgcta
    35881 ttctgaatac ggcggaacgt gagatcattg ccgttgacat ctaagcgccc accacgataa
    35941 ccaaaataga tattgttagg atccatttga tctgatgaat tgaggattac ggtaggtctg
    36001 ccactcacaa tacctagctc tgaaaatgca gattttttgt tattttcatc cgcttgttga
    36061 tttaatataa cagtgccgtc accaacgcta acggagcctt tgttttctcc tttgccgttg
    36121 atagttagtg tcccttgtcc gatttttgat aatctgtcac cagcagggtt actgattttc
    36181 cagatcacat ttttatcttt atcaatatca acaccggctc ctaaccaagt aatgcctgct
    36241 ttcatacctt ccacagtggt attaccatga aaatggattg ctcctgcacc ttggttgata
    36301 ttctctgtga gacttagcgt attgttttca cccaaaatat ggaatgtttt accgtgttgg
    36361 agttgaggat tccaagggtt atcgcctgta ttaccattat gaccttgaag tgttggtaat
    36421 gaagtatctg ctaaattaac tgtaagagga gcattccctc ctacgattga gctggtattg
    36481 ccagaaggtg tccaagtgag tctagcacca tttgcattaa tagcgcctgc attattttct
    36541 ttttctaaag cacgtacata atgtgggtgg tgatagttcc agtaagattt ataaacatct
    36601 cccccaagcg tattattctc tgagaaatag tcactatata cacctaacac aacccatttt
    36661 ttggtacgaa catcataacc aaaaagagcg gagccactat cgccaggtaa accgagagtt
    36721 gttaagggac cgtagccgtg gtctttaaat acatcgttta tggtattatt ttcagttttt
    36781 gctactaaaa tacggctgtt aaaatcgctg cctggaacgc ttggatcgcc attagtaaca
    36841 ggcagaacgc tacctcctgt caaaaaagga ccgttaccga cttcaatacg cccgttgttt
    36901 aagcgatctc tttcgttgtt aaccactgct tgtctaccag aaccggcacg aataaacatg
    36961 gggaaaataa aagggtcgct aaatacacta taaaaatctt gtacattttc ggtagtgcgt
    37021 tcaatctcat tagctggagc gacttcagtt actaatttcg ataacctagg tgcgtggtag
    37081 tcccagcggg gcgttgggtt acctgaacca tctaaaatca gtttttctcc ttcgtcatta
    37141 cgttcacgtt tttctatgcc tttcccgaga tctgttcttt ctttatttgg atcaggcata
    37201 tagttattac ggcgcaccac actataattg taatgatggt cgtcggcttt ttcgctagat
    37261 gaatcaccaa attgaatgtc ccgatagcct tggttgtggt ttacactaat aacgtattgt
    37321 ggattaacta atgttgcaat ccctgtttga cgagtaatgg aagagaagtc aatcattgga
    37381 atagacatag tctcacctgt tactgtttca aaaacaggta gatcattaga gtcttcatca
    37441 cctccaccat agagaaattc ataacaaccg ggtaaacttt cattatcaaa gcattcagat
    37501 aggcttacat tcggcttagg tgaaatattt gattccactt caacctgctt agttggtgta
    37561 acctgtaaaa aagtaccgat gtttttgccc gttttatcaa taactggaat attggttgcc
    37621 ccaacaaaaa atttgccttt attttctgct aaatcacgaa aatattgata atcgacatca
    37681 ccacgtacaa tagatgccag taatgttggt gaaagagaaa tagcaattga tgttgctaga
    37741 agagagagct tgaaagtatg cttcattat
//
LOCUS       DANLRW010000007        37551 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.007, whole genome shotgun sequence.
ACCESSION   DANLRW010000007 DANLRW010000000
VERSION     DANLRW010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 37551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37551
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.007"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            146..1504
                     /locus_tag="PXA71_000296"
     CDS             146..1504
                     /locus_tag="PXA71_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit A"
                     /protein_id="HDL5104446.1"
                     /translation="MITIKKGLDLPIAGKPEQVIHNGNTVTEVAMLGEEYVGMRPSMK
                     VREGDVVKKGQVLFEDKKNPGVVFTAPASGTVTAINRGEKRVLQSVVIKVEGDEQITF
                     ARYEASQLASLTSEQVKQNLVESGLWTAFRTRPFSKVPALDAEPSSIFVNAMDTNPLA
                     ANPEVIIAEHQQAFFDGLTVLSRLFESKKVIHLCGSADSNILNAAQSRQINNVETNRF
                     KGPHPAGLSGTHIHFIDPVGATKQVWYLNYQDVIAIGKLFTTGELFTDRVVALAGPQV
                     KNPRLVRTRLGANLSQLTANELNAGENRVISGSVLSGAIATGVHDYLGRYALQVSALL
                     EGREKAFFGMIAPYSDKYSITRTTLGHFAKKLFNFTTAVHGSERAMVPTGAYERVMPL
                     DIIPTLLLRDLAAGDTDSAQALGCLELDEEDLALCTFVCSGKNNWGPLLRQALDKIEK
                     DG"
     gene            1507..2742
                     /locus_tag="PXA71_000297"
     CDS             1507..2742
                     /locus_tag="PXA71_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit B"
                     /protein_id="HDL5104447.1"
                     /translation="MGLKNLFEKMEPAFHKGGKYEKWYTLFEAAYTIFYTPGTVTRKD
                     AHVRDAIDSKRMMLIVWLALFPAMFYGMYNVGAQGILAALKMGTLTDLVANNWHYSLA
                     DSLGSVADAGWGTKMLLGATYFLPIYLTVFAVGGFWEVVFAMVRKHEINEGFFVTSIL
                     LALIVPPTLPLWQAALATTFGVVVAKEVFGGVGKNFMNPALAGRAFLFFAYPGQISGD
                     AVWVAADGFSGATALSQWAVGGQGALQHVATGETITWMDAFLGNIPGSIGETSTLMLI
                     IGAAIIVFARIASWRIIAGVMIGMAATATLFNVIGSDTNPLFSMPWHWHLVLGGFAIG
                     MFFMATDPVSAAFTNKGKWAYGILIGFMCVLIRVVNPAYPEGMMLAILFANLFAPIFD
                     YLVVQGNIKRRLARVANNG"
     gene            2735..3508
                     /locus_tag="PXA71_000298"
     CDS             2735..3508
                     /locus_tag="PXA71_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)-translocating NADH-quinone reductase
                     subunit C"
                     /protein_id="HDL5104448.1"
                     /translation="MAKFNKDSVGGTLTVVVLLSLICSLIVAGAAVMLKPTQDIQKQL
                     DKQKNILQAAGLLQKDTNVQETYTKFIEPKIVDLATGDYVEGVTGFDARAAAKDPAQN
                     VVIAPEDDKANIKTRAKYAEVYLVKDESGKTTQVVLPMHGNGLWSIMYGFVAVQPDAN
                     TVNGITYYEQGETAGLGGEIANPNWQKNFVGKKLYNEQNQVALRVGKGASADKDHGVD
                     GLSGATLTSNGVDGSFKYWFGQNGFGPYLAKFKAAAGAN"
     gene            3508..4134
                     /locus_tag="PXA71_000299"
     CDS             3508..4134
                     /locus_tag="PXA71_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005717817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit D"
                     /protein_id="HDL5104449.1"
                     /translation="MADNNNLKKLLLSPIVDNNPIALQILGICSALAVTTQLQTAVVM
                     AIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYDLSKQLS
                     VFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKI
                     FGITILETVQNGGWYQANGLFLLAPSAFFIIGFVIWAIRTWKPEQVEK"
     gene            4136..4732
                     /gene="nqrE"
                     /locus_tag="PXA71_000300"
     CDS             4136..4732
                     /gene="nqrE"
                     /locus_tag="PXA71_000300"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005529392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit E"
                     /protein_id="HDL5104450.1"
                     /translation="MEHLLSIFVKSIFIENMALSFFLGMCTFLAVSKKVSTAFGLGIA
                     VIVVLGIAVPANQLVYTHVLKEGALVEGVDLSFLNFITFIGVIAALVQILEMILDKFF
                     PALYSALGIFLPLITVNCAIFGGVSFMVQREYNFVESVVYGVGAGTGWMLAIVALAGL
                     TEKMKYSDVPAGLRGLGITFITVGLMALGFMSFSGIQL"
     gene            4743..5972
                     /gene="nqrF"
                     /locus_tag="PXA71_000301"
     CDS             4743..5972
                     /gene="nqrF"
                     /locus_tag="PXA71_000301"
                     /EC_number="7.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:ubiquinone reductase (Na(+)-transporting)
                     subunit F"
                     /protein_id="HDL5104451.1"
                     /translation="MDSNFIFGIIAFTALVLVLAVIILFAKSKLVDSGDITISINNDP
                     EKGITLPAGGKLLGALASKGIFVSSACGGGGSCGQCKVQVKSGGGEILRTELSHISKK
                     EAKEGWRLACQVNVKSSMDVELPEEIFGVKKWECTVISNDNKATFIKELKLQIPEGEE
                     VPFRAGGYIQIEAEPHTVHYKDFDIPKEYHEDWDKFDLWRYTSKVDEHIIRAYSMASY
                     PEEKGIIMLNVRIATPPPRNPDVPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAE
                     MVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSEREMFYVEDFDGLQAENDNF
                     KWYVALSDPLPGDREDYFRGFIHNVLYENYLKNHEAPEDCEYYMCGPPVMNAAVIGML
                     KSLGVEDENILLDDFGG"
     gene            6084..6518
                     /locus_tag="PXA71_000302"
     CDS             6084..6518
                     /locus_tag="PXA71_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL5104452.1"
                     /translation="MEQLDITVLENAFNSLEKTIVSLENQAWFNRQEAIIQDTLIAGA
                     IQKFEFVYELSIKMLKRQLKNIESNDTDIDSTEFRDILRMAAQYGLIESPEVWLDYRK
                     MRNITSHTYDQNKAQQVYNGISNFLESTYFLVKQLQKRNSYD"
     gene            6511..6804
                     /locus_tag="PXA71_000303"
     CDS             6511..6804
                     /locus_tag="PXA71_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL5104453.1"
                     /translation="MIDLTESQRQQVLDIFKKYLPDTPVWVFGSRIKGTAKAYSDLDL
                     ALITKQPLTIRQQTELELAFTDSDLPFTVDLIDWASCNESFKQIILQRYEVLI"
     gene            6853..7887
                     /locus_tag="PXA71_000304"
     CDS             6853..7887
                     /locus_tag="PXA71_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HDL5104454.1"
                     /translation="MKKFFLLLIAFFTLSACEKAPEQITLSGKTMGTTYTVKYIDNGE
                     VENLISPEKMKNELDGLLIEVNNQMSTYQQDSEISRFNQAKQANQAVEISQDFAKVVQ
                     EAIRLNKVTEGALDVTVGPLVNLWGFGPDKRLNKVPSDEQIAERSAYVGIDKILLEMS
                     SKPKLTKSAANLYLDLSSIAKGFGVDKLAEHLETIGVSNYLVEIGGELRGKGKNLQGL
                     DWRIAIEKPVMTQGQAAQITVPLHNLAMATSGNYRNYFEDEKGNRLSHIIDPKQLRPV
                     NHNLASITVFAPTTMTADGLSTGLFVLGAEKALAVAEREKLAIFLIVKNGDKFETQMS
                     SEFSKLIQSQ"
     gene            7900..8145
                     /gene="nqrM"
                     /locus_tag="PXA71_000305"
     CDS             7900..8145
                     /gene="nqrM"
                     /locus_tag="PXA71_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Na+)-NQR maturation NqrM"
                     /protein_id="HDL5104455.1"
                     /translation="METVLLTFGFFVAVIFAMSIGFIVKGKTIKGSCGGITALGMKKM
                     CDCEEPCDNLKSKIADGTADPEEVARFNKEPQFYEVK"
     gene            8147..8563
                     /locus_tag="PXA71_000306"
     CDS             8147..8563
                     /locus_tag="PXA71_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase substrate binding
                     protein"
                     /protein_id="HDL5104456.1"
                     /translation="MNRDIRWKQRFDNYKKSVSYLQAEAEKYADTDIDVIKKGIIQSF
                     EITHELAWKLMQDILKWEGEVDIYGSKTASRLAFNRGLITQGEVWLEMIKSRNITVHT
                     DDETILTEEFNKIIKAYLPLFIEFEQRVETLCQTLD"
     gene            8545..8856
                     /locus_tag="PXA71_000307"
     CDS             8545..8856
                     /locus_tag="PXA71_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDL5104457.1"
                     /translation="MPNFGLSERATKTITDILAKYPEVEQAIIYGSRAKGNYREGSDV
                     DLTFKGKDLTYDIVKRIWGDLDDSDSPYLFDLSIYHQLTNANFIEHIDRVGKVFYQRE
                     L"
     gene            8967..10130
                     /gene="mnmA"
                     /locus_tag="PXA71_000308"
     CDS             8967..10130
                     /gene="mnmA"
                     /locus_tag="PXA71_000308"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDL5104458.1"
                     /translation="MTTQLTSKTYDTHFPKLTPEQLAENSKKKVIIGMSGGVDSSVSA
                     FILQQQGYQVEGLFMKNWEEDDDTDYCTAAAELADAQAVADKLGMKLHKINFAAEYWD
                     NVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD
                     AKLLRGLDENKDQSYFLYALNKKQIGQSLFPVGEIEKPIVRAIAEDLGLATAKKKDST
                     GICFIGERKFKDFLARFLPAQPGEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGL
                     SEDPFYVVEKDLINNVLIVAQGHDNSALLSSGLIAKQLTWVDMQPLRENLRCTVKTRY
                     RQADIACEIQVIDDETIRVMFDEPQIAVTPGQSAVFYLGEVCLGGGIIESQLK"
     gene            10247..11626
                     /gene="argH"
                     /locus_tag="PXA71_000309"
     CDS             10247..11626
                     /gene="argH"
                     /locus_tag="PXA71_000309"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDL5104459.1"
                     /translation="MALWGGRFTQQADAKFKYFNDSLRFDYRLAIQDIEGSIGWAKAI
                     TSVGILTVAELEQLIAALKEVRAEVESNLTIILKDDAEDIHSWVESKLIEKVGDLGKK
                     LHTGRSRNDQVAVDIKMWCKVQAVALQERIRALQERLVSVAEENQESVMPGYTHLQRA
                     QPVTFAHWCMAYYEMLERDFSRLSDANKRMSTCPLGSGALAGTAYGIDRDLLARDLGF
                     EEATRNSLDSVSDRDHILELLSTASISMMHLSRFAEDLIIFNSGESGFLEMSDRVTSG
                     SSLMPQKKNPDACELIRGKSGRVFGALNGLLTTLKGLPLAYNKDMQEDKEGIFDALET
                     WQACLEIAELVLVDIQVNTERTREAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VYAISKKEPLEALSINEFQQFHHSIGDDVYPILSLESCLEKRCAKGGVNPQRVAEAIA
                     VAKANLASK"
     gene            11794..12792
                     /locus_tag="PXA71_000310"
     CDS             11794..12792
                     /locus_tag="PXA71_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4115 domain-containing protein"
                     /protein_id="HDL5104460.1"
                     /translation="MTESVNSTQAGTALSLGQQLKAAREALNLSITDVAQKTNLKKSH
                     IESLENDIFILQNVAPTFVRGYVRNYVKFLRLPESLISSVNYGEVTIPKEVTKVSSVK
                     PSSNSQGKTLKYLTVLVLLAALGMTLLWWWQGYQKEQENREQFVSSAPVAEVANTATN
                     NDASAQTSVPVQQPIQVSEQPAQVAETVVAAEPALTEKVEPTQAASSPVTQEDVKVVE
                     EVKQADATTAQVEAVNVLQQSQSEQAPTEQPVAVTNDELRIEITGSQSWITVRGAKNK
                     RLAEKLYNNGETLSFNENEQYRLTIGAPANVKVYYKGQEVPLKIDGRVARIHLPLQ"
     gene            12893..14005
                     /gene="ispG"
                     /locus_tag="PXA71_000311"
                     /gene_synonym="gcpE"
     CDS             12893..14005
                     /gene="ispG"
                     /locus_tag="PXA71_000311"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDL5104461.1"
                     /translation="MIHQSPIKRRVSKKIYVGNVPVGGDAPITVQSMTNTRTTDVEAT
                     VAQIKSLERVGADIVRVSVPTMDAAEAFKAIKQQVSVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRTVVDCARDKNIPIRIGVNAGSLERDLQEKYGEPTPQALLES
                     ALRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARAGSV
                     KSAVGLGLLLAEGIGDTLRVSLAADPVEEVKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EIDVIATVNELEQRLEDIITPMDVSIIGCVVNGPGEALVSDLGVTGSNKMSGFYLDGV
                     RQKERFDNAKLIDQLEAKIRARVAQQHNRIDIEQIG"
     gene            14011..15282
                     /gene="hisS"
                     /locus_tag="PXA71_000312"
     CDS             14011..15282
                     /gene="hisS"
                     /locus_tag="PXA71_000312"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDL5104462.1"
                     /translation="MAKTIQAIRGMNDCSPSESPLWQWVEQKVRNVLASYGYSEVRMP
                     IVESTPLFARAIGEVTDVVSKEMYTFWDNDEQLTLRPEGTAGCVRAAIERGWIYNNEQ
                     RLWYMGPMFRHERPQKGRYRQFHQAGVEVFGIANPEIDAELIILTARLWKELGIDQHV
                     SLQLNSIGSLEARANYRSALVKFLENHTALMNEEEKERLVKNPLRILDTKNEALQNVL
                     NDAPKLLDYLDDDSREHFTQLCALLDAMGIRYEVNPKLVRGLDYYNKTVFEWVTSALG
                     SQGTVCGGGRYDGLVEQLGGHATQGVGFAMGLERLVLLVQEVNKEIDLPKTVDVYIVF
                     SGEGATLNAFQLAEQIRSELPHVGVMTHCSGGKFQKQFKRADKVEAQIALVIGESEVA
                     EKQVVIKDLRSGAEQITIAQSELIAELSKRF"
     gene            15292..15912
                     /locus_tag="PXA71_000313"
     CDS             15292..15912
                     /locus_tag="PXA71_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDL5104463.1"
                     /translation="MSNEYLNKTEEQQFEDAKNWFKENGTPILVAIILACAATAGWNF
                     WKNHQLETAQKTSASYQSVMESYLQNPSKNQPLVEKFIADNKDSSYAAFAQFEVAKQA
                     VEKGNFSAAKTALQSVLTYSDSTLQSIARFRLAQIDFQLKSYDEALASLAQIQDKAWE
                     LRKQILTGDILAAKGDIPAAKSAYEQAKTTANPQEQTLIDVRLNNL"
     gene            complement(15975..17078)
                     /gene="dnaN"
                     /locus_tag="PXA71_000314"
     CDS             complement(15975..17078)
                     /gene="dnaN"
                     /locus_tag="PXA71_000314"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDL5104464.1"
                     /translation="MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSL
                     TGTDLEVELTTQAQLLQAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDKAIIKA
                     GRSKFSLATLPASDYPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMK
                     FETEGNLLRTVATDGHRLAVCTMVLNQELLTHSVIVPRKAVLELSRLVASNDETVRLE
                     IGSSNIRITMNGIVFTSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSN
                     EKFRGVRLTLSNNLLKITANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC
                     QRVRFSLVDSSSSCLIEDCDNSSAEYVIMPMRL"
     gene            complement(17097..18446)
                     /gene="dnaA"
                     /locus_tag="PXA71_000315"
     CDS             complement(17097..18446)
                     /gene="dnaA"
                     /locus_tag="PXA71_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDL5104465.1"
                     /translation="MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQASSENGELTLY
                     AQNQFVENWVKDKFLSEITELARFLAKNDNLVVTLKVGIKPTEQPKVSPNLKNESSEF
                     SNTGFKTGLNPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESHCNPLSFYAGTGLGKTH
                     LLHAIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDD
                     IQFLANKPKVQEEFLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATI
                     EPPELETRVAILRQKALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLR
                     PITVDAVRETLQDLFASFDYLITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMA
                     MALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLSS"
     gene            complement(18633..20480)
                     /locus_tag="PXA71_000316"
     CDS             complement(18633..20480)
                     /locus_tag="PXA71_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5104466.1"
                     /translation="MFEKLFKWFEARVETYPNEMPKTPKSGLIPFIYDATKGMRFYIL
                     LLTVLVAAVGIIEAVLFRFMGDLVDWVNKYSPTELWAEKGWTIIGMFFIALLAVVFVY
                     LASSIRFQSLQGVFPMRLRWNFHRLMLGQSLGFYQDEFAGRVSAKVMQTALSVRDVIM
                     TCADMLVYVLVYFTTSSVILLQLDGWLFVPFILWVISLAATIIYFVPKLAQAAQEQSD
                     ARSLMTGRITDAYANIATVKLFSHGNRESAYAKESMEGFMVTVHKQMRLVTVIETVTN
                     LTSMALIISTAGIGLWLWGSSVVTAGAIATSTALALRIKGLSQWIMWEFARLFENLGT
                     VQDGMITLSKPHNVVDKIDAKPLNVTKGEIKFENVDFAYDPKKPLLKDFDLTIKPGEK
                     VGLVGRSGAGKSTLTNLLLRFYDIQDGSITIDGQNIRDITQESLRSQIGLVTQDTSLL
                     HRSVRENLMYGRPNATEEEMIKAVEQAAASEFIPNLQDAKGRTGFDAHVGERGVKLSG
                     GQRQRIAIARVMLKDAPILLLDEATSALDSEVEVAIQENLTQLMEGKTVVAIAHRLST
                     IMAMDRLIVLDKGEIVEQGTHEELLAQNGVYARLWAHQSGGFLPENTDI"
     gene            complement(20549..21058)
                     /gene="luxS"
                     /locus_tag="PXA71_000317"
     CDS             complement(20549..21058)
                     /gene="luxS"
                     /locus_tag="PXA71_000317"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDL5104467.1"
                     /translation="MPLLDSFKVDHTKMNAPAVRVAKTMTTPKGDTITVFDLRFCRPN
                     IDILPVRGIHTMEHLFAGFMRDHLNSEQVEIIDISPMGCRTGFYMSLIGSPSAEEVVK
                     AWTASMEDALHKIPDVSAIPELNEYQCGSYKEHSLKEAHQIARNVLAAGIGINRNEDL
                     ALDEKLLNP"
     gene            complement(21076..23742)
                     /locus_tag="PXA71_000318"
     CDS             complement(21076..23742)
                     /locus_tag="PXA71_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HDL5104468.1"
                     /translation="MTMEENTHTVVDAQIRQPRKISPFWLLPIVAFIIGALLFFQILK
                     EQGETITIRFSKGDGITAGKTAIRYQGLQIGQVKRVYFVDNLKEVEVQAEINPEAKSI
                     LRKQTKFWLVQPSASLAGVSGLDAIVSGNYITLLPGEGDFVDEFIAEEDPPAITVSDG
                     DLLIRLISDDIGSITVGASVYFRKVPVGNIADYRFTKDQKKIEIDVVINQKYAHLVKK
                     ESRFWNISGISADVNLQGIKINMDSLASVVQGAVAFDSPDNMEIAEQGQKFELYPDLK
                     SAKRGIEINVKLPLTHNLKINETGVFHQNVQIGMLSQLKLPQVKDNGVPQQESGQHKQ
                     IDGVLLIDPSYENLLRSQTKILLKEPKFSLNTEQLTKVGELLRGVYFEVHPGEGEPQS
                     EFVVQNEADYLLSLPNLLSFSLIAPQAYGVDTNQGIYYSDVQIGEIVKRSLELDKVRF
                     DVIIYPPYRNLIGSNSKFVAISNIDMSVGLDGLRVHAGSPSEWLKGGVRLINGKNDGS
                     PKKQYALYKDIESAESGMATLDKKATTTLSADSLSGISEGSLVLYRDFQVGEVLKITP
                     KQQKFEVELFIQPNYRHLLTEKSRFWIEPATSVDVSLKGVNITTAPLMRTLKGAISFD
                     DGGSKGNKTLYASKEKATSGNTYLTLIAKDASKLSEGMDIKYMGLTVGQIEKLELQNA
                     KKQIKATAYIQRKYYPLIAKAGSKFNVISPEISTSGFKNLDAALQNYITVDVGSGQAQ
                     NQFVLADTDTVKTTYANGFPIIVETTNANGIQPEAPVLYRGMQVGIVSRLGLSELGDR
                     VLIYVNIQDKYKHLVRTNTQFWQASGYTMDVSLQGVSMNSGTMSQLLNGGIEFSTPYT
                     KVVKPQAQPNRRFFLQRKLPDEAPAWDQGIAE"
     gene            complement(23825..24265)
                     /gene="fur"
                     /locus_tag="PXA71_000319"
     CDS             complement(23825..24265)
                     /gene="fur"
                     /locus_tag="PXA71_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HDL5104469.1"
                     /translation="MSEANIKRLKEVGLKVTEPRLTILALMQDIRDEMQHFAAEDIYK
                     ILLEKGSDIGLATVYRVLNQFEEAGILTRHNFDANKAVFELNMNHEHDHIICMDCGKV
                     FEFKDPDMERRQREISEKHGMELTNHSLYLYGKCSNLTNCDEKK"
     gene            complement(24301..24825)
                     /gene="fldA"
                     /locus_tag="PXA71_000320"
     CDS             complement(24301..24825)
                     /gene="fldA"
                     /locus_tag="PXA71_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HDL5104470.1"
                     /translation="MAVVGLFYGSDTGNTENISKMIQKKLGAELIDIRDIAKSTKEDI
                     EAYDFLMFGIPTWYYGESQADWDDFMPTLKEIDFNGKVVAIFGCGDQEDYAEYFCDAM
                     GTVRDVVEPNGGVIVGHWPTAGYTFEVSQALVDDDTFVGLCIDEDRQPELTTERVNKW
                     CEQLKEEMCLDQLA"
     gene            complement(24831..25106)
                     /gene="ybfE"
                     /locus_tag="PXA71_000321"
     CDS             complement(24831..25106)
                     /gene="ybfE"
                     /locus_tag="PXA71_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HDL5104471.1"
                     /translation="MAKQDSDCITLDLFATVPKVGRPRTNPLDREQQLRINKRNQLKR
                     DKSSGLKRVELKLHSNLVKLLEEQASEQGVSRGQLIETILNNYLTNR"
     gene            25347..26333
                     /locus_tag="PXA71_000322"
     CDS             25347..26333
                     /locus_tag="PXA71_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL5104472.1"
                     /translation="MSNIHLAIAADFTLAEKLLEALANQDLGIENISAVELEPFGEEQ
                     NLRFGAKAVAQYALDEVNWAEFSHVLFAGKMAQAEVLAEAVKAGCVILDLYGITALIG
                     DVPVVVPSVNDENVANLRERNIVALANPQISQLALALKPLLNEPLKQVWVTSLLPSAY
                     FGDEKVKELAGQTARLLNGIPFDENAERIAFDVVPANVQGEEKSLPFSKAFELQIAKV
                     LPNLTACTTFHSVQVPVFYGVSQMVSVQSEYQLDANALSEAWKAENWLNFNENSVITA
                     VKNGENEEQNALEISQLLAKSEQEVQFWTVADEQRFSLAFLAVKLLKLVLAY"
     gene            26430..27725
                     /locus_tag="PXA71_000323"
     CDS             26430..27725
                     /locus_tag="PXA71_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDL5104473.1"
                     /translation="MLEKLFQLKAKGSNVKTEIIAGITTFFTMVYIVFVNPSILGVAG
                     MDTQVVFVTTCLIAAFGTIAMGLFSNLPIALAPAMGLNAFFAFVVVQKLGYSWQVGMG
                     AIFLGSVGLFLLTVLQVRYWFMSAIPLGLRVGIGAGIGLFIALIGFKNMGLVVPNPAT
                     LVALGDLHDPKVLMGILGFFIIVVLAAKGIHSGVLISIVIVTALALAFDPAVSFNGIM
                     SMPPSLGAVVGQVDIAGAFDVALLGMIFSFMLVNLFDSSGTLIAVTTKAGFADEQGRF
                     PKMKQALLVDSTAAMAGSYMGTSAISTYIESGSGVSVGGRTGLTAVVVGILFLLTIFF
                     SPLAGLVPAYATAGALVFVGILMASSLIEVKWDDLTEATPAFITTAMMPFTYSITEGI
                     AFGFISYCVMKAFTGRWKEINLSVLVVSLLFIAKFVWVG"
     gene            27845..28213
                     /locus_tag="PXA71_000324"
     CDS             27845..28213
                     /locus_tag="PXA71_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/TusD sulfur relay family protein"
                     /protein_id="HDL5104474.1"
                     /translation="MSNSVQKLLFIINSAPYGNETFFSALRLALQIQEQHKANTEIKL
                     FLMSDAVTAGLAKQNPAEGYHIQQMLEILTAQGANVKLCKTCTNARGITDLPLADGVE
                     IGTLIELADWTIQADKVLNF"
     gene            28213..29406
                     /locus_tag="PXA71_000325"
     CDS             28213..29406
                     /locus_tag="PXA71_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDL5104475.1"
                     /translation="MQNIDVVVIGAGAAGLFCAAQLGQAGKKVVVLDSGKKVGRKILM
                     SGGGFCNFTNLDVSAGNYLSQNRHFVKSALSRYTQWDFISLVSHYGISYHEKELGQLF
                     CDESSQQIVDLLQAECNKGKVEILLRQAVISVEKVANFFEISTACGKFQSEHLVIATG
                     GLSMPALGASPFGYQLAEQFGIPVVPPRASLVPFTWKESDKYFAELSGIALPITVSAN
                     GKSFSNQMLFTHRGLSGPAILQISNYWELGETVEIDLLPSQSITDILSELRQSSPKLQ
                     LKTVLSRYLPKKLVEVWLEQKLLTDKVIADLSKKDLTLLEQFIHHWHFLPNGTEGYRT
                     AEVTKGGVDTDYISSKTMEAKNTAGLYFIGEVLDVTGWLGGYNFQWAWSSAFACAEGI
                     IEKSK"
     gene            complement(29477..29695)
                     /gene="infA"
                     /locus_tag="PXA71_000326"
     CDS             complement(29477..29695)
                     /gene="infA"
                     /locus_tag="PXA71_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDL5104476.1"
                     /translation="MAKEDCIEMQGTILETLPNTMFRVELENGHIVTAHISGKMRKNY
                     IRILTGDKVTVEMTPYDLSKARIIFRAR"
     gene            complement(29805..30464)
                     /locus_tag="PXA71_000327"
     CDS             complement(29805..30464)
                     /locus_tag="PXA71_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HDL5104477.1"
                     /translation="MYISREKITKTLLLAGITLLCCGIVAVILMGVNQFKLGSQLASI
                     NQVSNLSHLLVRQQANIFSFLLVKNAKTDELVDALDSFAKEDFIIDANIYSPNGVLLA
                     QSQNAKDLKVLLDSEQSAKTQQIVEPIFSQQALVGFLRVTFDAEYGQTTKARVEQQFH
                     QLYGEIIILLLTGILLASSINYYFRRKIHHVQISPKPLMSQVKTQTQRFHSRRRWIKR
                     K"
     gene            30550..31413
                     /gene="serB"
                     /locus_tag="PXA71_000328"
     CDS             30550..31413
                     /gene="serB"
                     /locus_tag="PXA71_000328"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HDL5104478.1"
                     /translation="MTNTIFIYSKTLNEREIEQFSQQTAAILLKQAVYLDYKIAFFST
                     NLTACELRETAQKINADISDLTIIPTLNQGGLLLMDMDSTAIKIECIDDIAKLAGTGE
                     VVSAITASAMRGELDFEQSLRKRVGTLENASESILQKVRENLPLMDGFEQMVAILKEH
                     GWKLAIASGGFDYFADYLKQKYGLNFAVSNQLEIIDGKLTGKVLGKVVDAQHKADTLQ
                     NLATTFNIPPNQWVAVGDGANDLPMLKTASLGVALHAKPKVQAQADFVVNFGDLTALC
                     LLLNANHLFQH"
     gene            31429..31920
                     /locus_tag="PXA71_000329"
     CDS             31429..31920
                     /locus_tag="PXA71_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HDL5104479.1"
                     /translation="MPSFDIVSEITMHEVRNAVENANRVLSTRYDFRGVEAVIELNEK
                     NESIKLTTESDFQLEQLIEILIGSCVKRGIEHSSLDIPTESEHHGKLYSKEIKLKQGI
                     ESDMAKKITKLIKDSKIKVQAQIQGEQVRVTGKSRDDLQAAIQLVKGADLGQPFQFNN
                     FRD"
     gene            32005..32181
                     /locus_tag="PXA71_000330"
     CDS             32005..32181
                     /locus_tag="PXA71_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5363 domain-containing protein"
                     /protein_id="HDL5104480.1"
                     /translation="MMSEQTEKKGWFKKALEKYDAFCDELGVNQGACRGCVPVVKFDP
                     EPEKEQPEKSENKT"
     gene            complement(32229..32525)
                     /locus_tag="PXA71_000331"
     CDS             complement(32229..32525)
                     /locus_tag="PXA71_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104481.1"
                     /translation="MKKHHIIILTLASASVVACSSNTPVQVVNGDKNIDYSQPKTIYI
                     SETNTQPPALTKQEKIKPSNATALCFNGSYSTDIQNPCKKDGGVKQYFAHHHAN"
     gene            complement(32602..33570)
                     /gene="mdh"
                     /locus_tag="PXA71_000332"
     CDS             complement(32602..33570)
                     /gene="mdh"
                     /locus_tag="PXA71_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDL5104482.1"
                     /translation="MCQSKKVALLGAAGGIGQSLALLLKLNLPAKSELSLYDISPVTP
                     GIAVDLSHIPTDVKVTGFAGEDPTEALKDADVVVISAGVARKPGMTRADLFNTNATIV
                     HNLVEKAAKVCPKACIAIITNPVNTIIPIAAEVLKKAGVYDKNKLFGVTTLDVIRANT
                     FVAEAKDVNVKYVRVPVIGGHSGTTILPLLSQATVNGLKLEFTQEQIEQLTHRIQNAG
                     TEVVEAKAGGGSATLSMAQAGAEFALGLVRALIGEDVIRYAYVDNANGETSPAFFAYP
                     IRLGTNGVEKVLPIGNLSEFEKDQLEQLIPVLNDEIQLGQTFNKNA"
     gene            33766..34227
                     /gene="argR"
                     /locus_tag="PXA71_000333"
     CDS             33766..34227
                     /gene="argR"
                     /locus_tag="PXA71_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HDL5104483.1"
                     /translation="MDKIDSLSEAFKSLLKEEKFGSQSEIVAALQEMGFDNINQSKVS
                     RMLSKFGAVRTRNPKMEMVYQLPVELSVPTTSSPLKNLVVDIDHNDALIVVKTSPGAA
                     QLIARLLDSMGKAEGILGTIAGDDTIFITPVRNVQIEKLVKNVTQLFETSL"
     gene            34277..35173
                     /locus_tag="PXA71_000334"
     CDS             34277..35173
                     /locus_tag="PXA71_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HDL5104484.1"
                     /translation="MHIFITGGTGFIGRELIQQLKSENHHFTLLTRDTEAKSDDLQIN
                     YCYSLDELVDLNDFDAVINLAGEPIFDKRWTDEQKQKLIESRVNLTNKLSQLMNASSN
                     PPHTFLSGSAIGIYGDLPPSANFYTESTACYQDCFTNRLCQQWEAAALKAASDKTRVC
                     LIRTGTVFSPEGGALKKILPLYRCGLGGKLGSGKQYWAWISRRDHVQAVIFLLKNANC
                     SGAYNFVAPNPVRNEEFNRILANAVNRPAFFTVPEFALKLGLGERACLVLDNQQLIPE
                     KLLAASFVFQDPILTENVFLNP"
     gene            35218..37416
                     /gene="uvrD"
                     /locus_tag="PXA71_000335"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             35218..37416
                     /gene="uvrD"
                     /locus_tag="PXA71_000335"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HDL5104485.1"
                     /translation="MDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIA
                     WLIGVENVPESNILAVTFTNKAAAEMRHRIEYTLSQSGDNRLFGMWVGTFHSIANRLL
                     RSHYLDADLPQDFQIMDTEDQQRLLKRLLKLHNIDEKHFPPKHVAWYINAQKDKGKRA
                     KDIDHYNDPNEKKLVEIYQIYQDACDRAGLLDFAELLIRAYELFKTKSTILQRYQQRF
                     QQILIDEFQDTNNIQYDLIRLLAGDVGKVMIVGDDDQSIYGWRGAQVENIQRFLNDYD
                     NAQTIRLEQNYRSTGNILSCANELIANNDNRLGKNLWTDSGDGEPVDIYCAFNELDEA
                     RFVASQIKQWKEDEGDLAECAVLYRSNSQSRVIEEALIQANIPYRIYGGMRFFERQEI
                     KDALAYLRLIANRQDDAAFERVINTPTRGIGDRTLDTLRQITRGRQITLWQAIQVAVQ
                     EEQLSGRATSSLLRFVELINALDQETEQMSLAEQTDFVIKKSGLYEMYKQEKGEKGEV
                     RIENLEELVTATKQFVKPDEAEELTDLTAFLTHASLEAGEAQASQHEDYVELMTLHSA
                     KGLEFPRVFIVGVEEGIFPSGMSFDEGRLQEERRLAYVGITRAKKKLTISYAESRRLY
                     GKEERHVPSRFIAELPEEHIREVRLRGSINRAASFNQANSFAKNPTKTTASFLNDDTW
                     KMGQKVNHAKFGQGTIINVEGSGEATRLQVAFVGNGIKWLIAKMANLERI"
BASE COUNT        11062 a         7225 c         8196 g        11068 t
ORIGIN      
        1 tgatcacaga tttgagaact taatgtggct tttaaaaata ggtgggggac cattgtttat
       61 ttttaagtaa agctgcggct caatagaagc gattgcgtta gcgcaatcat attttttaac
      121 ccaaaagaaa agtagtgcaa acaatatgat tacaatcaaa aaaggcttag atcttccgat
      181 tgcgggaaaa cctgagcaag taatccataa cggtaatacc gttactgaag ttgctatgct
      241 tggtgaagaa tatgtgggta tgcgtccttc aatgaaagtg cgtgaaggcg atgtagtaaa
      301 gaaaggtcag gttctttttg aagataaaaa gaatccgggc gtggtattta ctgcccctgc
      361 aagtggtacc gtaacggcaa ttaaccgtgg cgagaagcgt gttcttcaat cggtagtaat
      421 taaagttgag ggtgatgagc aaattacctt tgctcgttat gaagccagcc aattagcttc
      481 attaacttca gagcaagtaa aacaaaacct tgtagagtca ggcttatgga cggctttccg
      541 tacacgtccg tttagcaaag tgcctgcatt agatgcagaa ccttcctcta tttttgtcaa
      601 tgcgatggat accaatccac ttgcagcaaa tccggaagtg attattgcag aacaccaaca
      661 agctttcttt gatggcttaa ctgtattaag tcgtttattt gaaagtaaaa aagtgattca
      721 tctctgtggc agtgcagact caaatatttt aaatgcggca caaagccgtc agatcaataa
      781 tgtggaaact aaccgcttta aaggtccgca ccctgcaggt ctttctggta cgcatattca
      841 ctttattgac ccggtaggtg caactaaaca agtttggtat ttaaattacc aagatgtaat
      901 tgctatcggt aaattattta cgaccggtga gctatttact gaccgtgtag tcgcattagc
      961 cgggccacaa gtgaaaaatc cacgtttggt gcgtactcgt ttaggggcga atctttcaca
     1021 attaacagcc aacgaattaa atgcgggtga aaaccgtgtc atttcaggtt ctgtgttaag
     1081 tggtgctatc gcaacgggag tacacgacta tttaggtcgt tacgcattac aagtgtctgc
     1141 tttattagaa gggcgtgaga aagcgttctt cggtatgatt gctccttact ctgataagta
     1201 ttcaattacg cgtactactt tagggcattt tgcgaagaaa ttatttaact tcacaacagc
     1261 agttcacggt agtgagcgtg caatggtacc aacaggggct tatgagcgtg taatgccgtt
     1321 ggatatcatt ccaacactct tattgcgtga tttagcagct ggagatacag actccgctca
     1381 agctttaggc tgcttagagt tagacgaaga agatttagcg ttatgtactt ttgtgtgttc
     1441 cggtaaaaac aactggggac cattattacg tcaagcgtta gataagatcg agaaggacgg
     1501 ttaaaaatgg gtttgaaaaa tctttttgaa aaaatggaac ccgctttcca taaaggtgga
     1561 aagtatgaga aatggtacac gctatttgaa gctgcctata cgattttcta tacaccgggt
     1621 acggtcactc gtaaagatgc tcacgtgcgt gatgcgattg actctaagcg tatgatgtta
     1681 attgtatggt tagcgttatt ccctgcgatg ttctacggaa tgtacaatgt tggtgcacag
     1741 ggtattctag cggcactcaa aatgggaaca ttaacggatt tagttgctaa caactggcac
     1801 tacagcttag ccgatagttt aggctctgta gctgatgcag gctggggaac taaaatgttg
     1861 ctgggggcaa cctatttcct accaatctac ttaacagtat ttgcagtggg cggtttctgg
     1921 gaagtggtgt ttgcaatggt gcgtaagcac gagatcaacg aaggtttctt tgtaacctct
     1981 atcttactag cattaattgt tcctccaaca ttaccgttat ggcaagcagc ccttgcaact
     2041 acctttggtg ttgtggtcgc aaaagaagtg ttcggtggcg tgggtaaaaa ctttatgaac
     2101 cctgcgttag ccggtcgtgc tttcttgttc tttgcttacc cgggtcaaat ttcaggtgat
     2161 gcagtatggg ttgccgcaga cggcttctca ggtgcaactg cactttctca atgggcagtt
     2221 ggtggtcaag gtgcattaca gcacgttgca accggtgaaa ccattacttg gatggatgcg
     2281 ttcttaggta atattccggg ttctatcggc gagacctcta ccttaatgtt gattattggt
     2341 gctgcaatca ttgtatttgc ccgaattgct tcttggcgaa ttattgccgg tgtaatgatt
     2401 ggtatggcgg caactgcgac attatttaat gtaatcggtt ctgataccaa cccattattc
     2461 tctatgcctt ggcattggca tttagtatta ggcggttttg cgatcggtat gttctttatg
     2521 gcaaccgacc cggtatcagc tgcatttacc aacaaaggta aatgggcata cggtatctta
     2581 atcggcttta tgtgtgtatt aatccgtgtg gtaaacccag cataccctga aggtatgatg
     2641 ttagcgatct tatttgctaa cttatttgct ccaatctttg actatttagt agttcaaggg
     2701 aatatcaaac gcagattagc gagggtagca aacaatggct aaatttaata aagatagcgt
     2761 tggcggaacg ctaaccgttg tagttttatt aagtttaatt tgttctttga ttgtggcagg
     2821 tgcggcagta atgcttaaac caacacaaga tattcagaaa caacttgata aacagaaaaa
     2881 catcttacaa gcggccggtt tattgcaaaa agataccaat gtgcaagaaa cctataccaa
     2941 atttattgag ccgaaaattg tcgatttagc aacaggtgat tacgttgagg gtgtaaccgg
     3001 ttttgatgct cgtgcagcag ctaaagatcc tgctcaaaat gtagttatcg cacctgaaga
     3061 tgataaggcg aatatcaaaa cgcgtgctaa atatgctgaa gtttatttag taaaagatga
     3121 atctggcaaa acgactcaag tagtattacc aatgcacggt aacggcttat ggtcaattat
     3181 gtacggtttc gttgcggtac aacctgatgc aaataccgtt aacggtatta cttactatga
     3241 acaaggtgaa acggcaggct taggtggcga aattgcaaac ccgaactggc agaaaaactt
     3301 tgtaggtaaa aaactgtata acgagcaaaa ccaagttgcg ttaagagtgg gtaaaggggc
     3361 atctgcagat aaagatcacg gtgttgatgg tttatctggt gcaacattaa cctcgaacgg
     3421 tgttgatggt tcattcaaat actggtttgg tcaaaatggt tttggtccat atttagcaaa
     3481 atttaaagca gcggcaggag ctaactaatg gcagacaata acaatcttaa aaaattattg
     3541 ttatcgccaa ttgtcgataa caacccgatc gcattacaga tcttaggtat ttgttctgcg
     3601 ttagcggtaa cgactcaatt acaaacagca gtagtaatgg cgattgcggt aagtttagtt
     3661 actgcattct caagtatgtt catttcaatg attcgtaact atattccaaa tagtatccgt
     3721 atcattgtgc aaatggcgat tattgcatca ttagtaattt tggttgacca aatcttacgc
     3781 gcttatgctt acgatctgtc aaaacaatta tcggtattcg taggccttat tattaccaac
     3841 tgtatcgtaa tggggcgtgc agaagcattc gcgatgaaat caggcccggt tgaaagtttt
     3901 gttgatggta tcggtaacgg tttaggctac ggtgcaatgt taattatcgt tgccttttta
     3961 cgtgaactta tcggttcagg taaaattttc ggtatcacca ttcttgaaac tgttcaaaat
     4021 ggcggttggt atcaagcaaa cggtttattc ttattagcac caagtgcgtt ctttattatc
     4081 ggatttgtga tctgggcgat tagaacgtgg aaaccggaac aagtggagaa ataagatgga
     4141 acatcttctg agtatctttg ttaagtccat atttattgaa aatatggcac tttctttctt
     4201 ccttggtatg tgtacattcc ttgcggtgtc taagaaagtt tcaactgctt ttggtttagg
     4261 tattgcggta attgtagtac ttggcattgc agttccagct aaccaattag tttataccca
     4321 cgtattaaaa gagggtgcat tagtagaagg tgtggattta agcttcttaa actttatcac
     4381 tttcatcggg gttattgcgg cacttgttca aattctggaa atgattttag acaagttttt
     4441 cccggcactt tatagtgcat taggtatctt cttaccactt atcaccgtaa actgtgcgat
     4501 ttttggtggt gtatcgttta tggtacaacg tgagtataac tttgtagaat ctgtggttta
     4561 tggcgtaggt gcaggtacag gctggatgtt agccatcgtt gcccttgcag gtttaaccga
     4621 gaaaatgaaa tattccgacg tgccggcagg cttacgtggt ttaggtatta cctttattac
     4681 ggtaggctta atggcgttag gctttatgtc attctcaggc attcaattat aaggagcata
     4741 tcgtggatag taattttatt ttcggtatta tcgcatttac ggctctggta ttagtgcttg
     4801 cggtgatcat tcttttcgct aaatcaaaat tagttgattc aggtgatatt accatctcaa
     4861 tcaacaacga tccggaaaaa ggcattacgc taccggctgg tggaaaatta ctcggtgctt
     4921 tagcaagtaa agggattttc gtttcgtcag cttgtggggg cggtggctct tgcggtcaat
     4981 gtaaagtaca agtgaaatca ggcggtggtg aaattcttcg aactgagtta tcgcacattt
     5041 ctaagaaaga agcgaaagaa ggctggcgtt tagcttgtca ggtaaacgtg aaatcttcaa
     5101 tggacgttga acttccggaa gagatctttg gtgtgaaaaa atgggaatgt accgttatct
     5161 caaacgataa caaagcaacc ttcatcaaag agcttaaact tcaaattcct gaaggcgaag
     5221 aagtaccgtt ccgtgcgggt ggttatatcc aaattgaagc tgaacctcat accgttcatt
     5281 ataaagactt cgatattcca aaagagtacc acgaagactg ggataaattt gacttatggc
     5341 gttatacttc aaaagtggac gagcatatta ttcgtgcata ctcaatggct tcatatccgg
     5401 aagagaaagg cattattatg cttaacgtgc gtattgctac acctccacca cgcaatccgg
     5461 acgtaccgcc gggtcaaatg tcttcctaca tttggtcatt aaaaccgggt gataaagtaa
     5521 caatttcagg tccattcggt gagttcttcg ctaaagatac cgatgcggaa atggtcttta
     5581 tcggtggtgg tgcaggtatg gcaccaatgc gttcacatat cttcgaccaa ttaaaacgtt
     5641 taaaatctaa acgtaaaatg tcattctggt atggtgctcg ttctgagcgt gaaatgttct
     5701 atgtggaaga ttttgatggt cttcaagcag aaaacgataa cttcaaatgg tatgtggcac
     5761 tttctgatcc attaccgggc gacagagaag attacttccg tggctttatt cataacgtgc
     5821 tttatgagaa ctacctcaaa aaccacgaag cacctgaaga ctgcgaatac tatatgtgtg
     5881 gtccaccggt gatgaatgct gcggtaatcg gtatgctgaa gagtttaggt gtagaagacg
     5941 aaaacatctt attagatgac tttggtggtt gataaacctt aacttctgac tacaagcggt
     6001 caaatttgca aaattgaccg cttgatttaa tttatattat taagttttgg taatttaata
     6061 atgtgaattt taaggggaag caaatggaac aactggatat tacggtactt gaaaatgcct
     6121 tcaattccct tgagaaaacg attgtcagcc ttgagaatca agcgtggttt aaccggcaag
     6181 aagcaattat tcaagacact ttgattgcag gagcaatcca aaaatttgaa tttgtttacg
     6241 aattgtcgat aaaaatgctc aagcgtcagc tcaaaaacat tgagtcaaat gacactgata
     6301 ttgatagcac cgagttccgt gatattttgc gaatggctgc tcaatatggg ctgattgaat
     6361 caccggaagt ttggctggat tatcgcaaaa tgcgaaatat tacttcgcat acttatgatc
     6421 aaaataaagc acagcaggtt tataacggaa tttcaaactt tctggaaagt acgtattttt
     6481 tagttaaaca gctccaaaaa cgcaatagct atgattgatt taactgagtc acaacgccaa
     6541 caggtgttgg atattttcaa aaaatacttg cctgatacac ccgtttgggt ttttggctct
     6601 cgcattaaag gcacagccaa agcctattcg gatcttgatt tagcattaat caccaaacaa
     6661 ccgctcacaa ttcggcaaca aacagagtta gagcttgcgt ttacggattc tgacctacct
     6721 ttcacagtag atctgattga ctgggcaagt tgcaacgaat cgtttaaaca aattatttta
     6781 cagcgatatg aagtgcttat ttaatcgcta aatatgctat aatttcccca atttttaact
     6841 tttgtgacac caatgaaaaa attttttctt cttttaattg ctttttttac tttaagtgct
     6901 tgtgaaaaag cccctgagca aattacgctg tcaggcaaaa ccatgggaac gacttacacc
     6961 gtaaaatata ttgataatgg tgaagtggag aatttgattt cgcctgaaaa aatgaaaaat
     7021 gagctggatg gcttattgat tgaggtgaat aatcagatgt ccacctacca acaagattcg
     7081 gaaattagcc gttttaatca agcaaagcag gcaaatcaag cggtcgaaat ttcgcaggat
     7141 tttgcaaaag tggtacaaga ggcaatccgt ttaaataaag taaccgaagg ggctttagat
     7201 gtaaccgttg gtccattggt gaacttgtgg ggcttcgggc cggataaacg cttaaataaa
     7261 gtgccgtctg atgaacaaat tgcagagcgt tctgcttatg tcggcattga taaaattttg
     7321 cttgaaatga gtagtaaacc caagctcacc aagtcagcag ctaatcttta tctagattta
     7381 tcgtctattg caaagggttt cggtgtagat aaattagccg agcatcttga aactataggt
     7441 gtgagcaact atttagttga aattggtggc gaattacgag gcaaaggaaa aaatttacaa
     7501 ggcttagatt ggcggattgc aatcgagaag ccggtaatga cacaaggtca agccgcacaa
     7561 attaccgtgc cgttgcacaa tttggcgatg gcaacttcgg gcaattatcg taattatttt
     7621 gaagatgaaa aaggcaaccg tctttcacat attatcgacc caaaacagtt acgtccggta
     7681 aaccataatt tagcctctat caccgtattt gccccaacta caatgacggc agacggctta
     7741 tcaaccggtt tatttgtttt aggagcggaa aaagcattag cagtggcaga gcgtgaaaaa
     7801 ttagctattt ttttaattgt taaaaacggc gataaatttg agacacaaat gtcgagcgaa
     7861 tttagcaaac ttattcaatc acaatagttg gagtgaaaaa tggaaactgt attattaacc
     7921 tttggctttt ttgtagccgt aatttttgcg atgtcgattg gttttatcgt gaaaggcaaa
     7981 accatcaaag gcagctgtgg cggtatcacc gctttaggta tgaaaaaaat gtgcgactgc
     8041 gaagaacctt gcgataacct aaaatctaaa atcgcagacg gcacagccga ccctgaagaa
     8101 gtggcacgtt ttaataaaga gccacaattt tatgaagtga aataatatga atagagatat
     8161 tcgctggaaa cagcggtttg ataactataa aaaatcagta agttaccttc aagcagaagc
     8221 agaaaaatac gctgataccg acattgatgt aattaaaaaa ggaattatcc agagttttga
     8281 gattacacac gagttagcgt ggaagttaat gcaagatatt ttaaaatggg aaggtgaagt
     8341 tgatatttat ggttcaaaaa cggcttctcg tttggctttt aatcgtgggc taatcactca
     8401 gggcgaagtt tggctagaaa tgataaaaag ccgcaatata acagttcata ctgacgatga
     8461 aactatttta actgaagaat ttaataaaat tatcaaggcg tatctgcctt tatttattga
     8521 atttgaacag cgagtagaaa cactatgcca aactttggac taagcgaacg agcgacgaaa
     8581 actattaccg atattcttgc gaaataccct gaagtggagc aagccattat ttacggctcg
     8641 cgtgctaaag gtaattatcg tgaaggctca gatgtagatc ttacttttaa aggaaaagat
     8701 cttacttacg atattgtcaa acgcatttgg ggtgatttag acgattccga ctcgccctat
     8761 ttatttgact tgtcgattta tcatcaatta accaatgcca actttattga acatattgat
     8821 agagtaggaa aagtctttta ccaaagagaa ctctaatttc ttaataggca agcggttcat
     8881 tttgcaaaat tttttgcaaa tttcaccgct tgttgttttt attattaacc aatgtgcttc
     8941 gccttaaccg aagttacggg agatttatga caactcaatt aacctcaaaa acctacgaca
     9001 ctcatttccc taaattaacc ccagaacaac ttgctgaaaa cagcaagaaa aaagtcatta
     9061 tcggtatgtc cggtggggtg gattcctcgg tttccgcttt tattcttcaa cagcagggct
     9121 accaagtgga aggcttgttt atgaaaaact gggaagaaga tgatgatacg gattattgta
     9181 ccgccgccgc cgagcttgcc gatgctcaag cggttgccga taaactgggt atgaaactgc
     9241 ataaaattaa ttttgcagcg gaatattggg ataatgtatt tgaatatttc ttggcagaat
     9301 acaaggcagg aagaacgcca aatccggata ttttgtgtaa taaagagatc aaatttaaag
     9361 cctttttgga atatgcggca gaagatcttg gtgcggatta tattgcgacc gggcattacg
     9421 tccgccgtac gagcgatgat caagatgcga aacttttgcg tggcttagat gaaaacaaag
     9481 atcagagtta ctttttatat gcgttaaata aaaagcagat cgggcagagt ttattcccag
     9541 tgggtgaaat tgagaagccg attgtgcgag ccattgccga agacctagga ttagcaaccg
     9601 caaagaaaaa agattctacc ggcatttgtt ttatcggtga gcgtaaattt aaagatttct
     9661 tagctcgttt tctaccggct caaccggggg aaatccgcac cgttgagggc aaattagtcg
     9721 gtcgccatga tgggctgatg tatcacacgc ttgggcaacg caaaggcttg ggtatcggtg
     9781 gggtgaaagg gctaagtgaa gatccgtttt atgtggtgga gaaagactta attaacaatg
     9841 tattgattgt ggcacaagga cacgataatt cagccctgct ttcaagtggc ttaattgcga
     9901 aacagctcac ttgggtggat atgcagccgt tgcgtgaaaa tttacgctgc acggtaaaaa
     9961 cccgttatcg tcaagcagat attgcgtgtg aaatccaagt gattgatgat gaaaccattc
    10021 gagtgatgtt tgatgaaccg caaattgccg tgacgccggg gcagtctgcc gtgttttact
    10081 taggtgaagt ttgcttaggc ggtggcatta ttgagtcaca attaaaatag ttataaataa
    10141 atattgaaat attttgcata tttatgcaaa ataagcgaaa agttaaggcg gtaaaacgcc
    10201 tttttcattt tgatcgatac aaagaataat atacaaggaa cagactgtgg cactttgggg
    10261 tggacgcttt acacaacaag cagacgcaaa atttaaatat tttaacgatt cattacgttt
    10321 tgattaccgc ttggcgattc aagatattga aggctcaatc ggctgggcaa aagccattac
    10381 ttcggtaggt attttaacgg tagcagaatt agaacaacta atcgcagcat taaaagaggt
    10441 gagagcagag gtagaatcta accttaccat catcttaaaa gatgatgcgg aagacattca
    10501 cagctgggtt gaatctaagc tgattgaaaa agtgggcgat ttaggtaaaa aattgcacac
    10561 cgggcgtagc cgtaatgacc aagtagcggt ggatattaaa atgtggtgca aggtgcaagc
    10621 ggtggcattg caagaaagaa tccgagcttt gcaagagcgt ttggtttccg ttgccgaaga
    10681 aaatcaagag tcggtgatgc cgggctatac ccatttacaa cgagctcagc ctgtgacctt
    10741 cgctcattgg tgtatggcgt attatgaaat gctagaacgg gatttcagcc gtttgagtga
    10801 tgctaataaa cgtatgagca cttgcccgct tggttcaggg gcattggctg gtacggctta
    10861 cggcattgat cgtgacttat tagcccgtga tttaggcttt gaagaagcca cacgcaacag
    10921 tttagacagc gtgtcagatc gtgaccatat tttagagctg ctctctactg cctcgatcag
    10981 tatgatgcac ctctctcgct ttgctgaaga tttaatcatt tttaatagtg gcgaatcagg
    11041 cttccttgaa atgtcggatc gtgtgacctc aggctcatca cttatgccac agaagaaaaa
    11101 ccctgatgct tgtgagctga ttcgtgggaa atccggtcgg gtatttgggg cattaaacgg
    11161 tttattaact acactcaaag ggttaccact tgcttataat aaagatatgc aagaggacaa
    11221 agagggtatt tttgatgcgt tggaaacttg gcaggcttgt ttagaaattg cagaacttgt
    11281 actggttgat attcaagtga ataccgaacg cacccgagaa gccgctcagc aaggttatgc
    11341 gaatgcgacc gagttggcag attatttagt ggcgaaaggc gtgccattcc gtgaagctca
    11401 tcatattgtt ggcgaagcgg tggtttacgc aatcagcaaa aaagagccac ttgaagcatt
    11461 aagcattaac gaattccagc aattccatca ttcgattggc gatgatgttt acccaattct
    11521 ctcgttagaa tcttgcttag aaaaacgttg tgccaaaggt ggagtgaacc cacaacgtgt
    11581 ggcagaggcg attgcggtag ccaaagccaa tttagcttca aagtaaaacc ggatacaagc
    11641 ggtcatattt tgcaaaaaaa ttgaaaaata tgaccgcttg ccgattaaat tttcaatttt
    11701 ttacgcatta agattgcaaa ataggcatta cctctttaaa cttccgaata atttttgaat
    11761 tttatttcta ctactttctt taaagagttt tatatgacgg aatcagttaa ttctactcaa
    11821 gctggtacag cactttcttt agggcaacaa ttaaaagcgg ctcgtgaagc gttaaatctc
    11881 tctattacag atgttgctca aaaaaccaac ttaaaaaaat cacatattga atcacttgaa
    11941 aatgatatct ttattctaca aaatgttgcc ccaacttttg tgcgtggcta tgtgcgtaat
    12001 tatgtgaaat ttttgcgttt acctgaatcc cttatttcga gcgttaatta tggtgaagtc
    12061 actattccaa aagaagtcac taaagtttct tcagtaaaac cttcatcaaa ttcacaaggt
    12121 aaaaccttaa agtatttaac ggtattagta ttgcttgcgg cattaggaat gacattactt
    12181 tggtggtggc aagggtatca aaaagaacag gaaaatcgcg agcaatttgt tagctctgca
    12241 ccagttgctg aagtggcgaa taccgctaca aataatgatg cttcagcaca aacttccgtg
    12301 cctgttcagc aacctattca ggtttcagag cagcctgctc aagtagcaga aacggtagtt
    12361 gcagcagaac cggcattaac tgaaaaagta gagcctacac aagcagcatc atcacctgta
    12421 acacaagaag atgttaaagt ggtagaagaa gttaaacaag ctgatgccac cactgcacag
    12481 gttgaggcag ttaatgtttt acagcaatct caatcggaac aagcccctac agaacagcct
    12541 gttgcggtaa cgaatgatga gcttcgtatc gaaattaccg gttcacaaag ctggattaca
    12601 gtgcggggtg ctaaaaataa acgtttagca gaaaaattat ataacaatgg tgagacttta
    12661 agtttcaatg agaatgagca atatcgttta accattggtg cgcctgccaa tgtaaaagtg
    12721 tactataaag gtcaagaagt accattgaaa attgatgggc gtgtagctcg tattcattta
    12781 ccgttacagt aagcttgatt taacgatgaa acgcacgtaa agctagcatt taacgatagc
    12841 tgtctttacg agcgttttct gtttttataa attttcacaa ttagctaaaa atatgataca
    12901 tcaatcacct attaaacgtc gggtatcgaa gaaaatctat gtgggtaatg tgcctgtagg
    12961 cggcgatgca ccgattacgg ttcagtcaat gaccaacacc cgcacaaccg atgtggaagc
    13021 caccgttgct caaattaaat cgctggaacg ggtcggggct gatattgtgc gtgtgtctgt
    13081 gccgacaatg gacgctgctg aggcatttaa agcgattaaa caacaagtga gtgtgccatt
    13141 ggtggcggat atccacttcg attaccgcat tgcgttgaaa gttgccgaat atggggtgga
    13201 ttgcttgcgg attaacccgg gtaatatcgg gaatgaagag cggatccgca cggtggtaga
    13261 ttgtgccaga gataaaaaca ttccgatccg aatcggggta aatgccggat cattagagcg
    13321 tgatttgcag gaaaaatatg gcgagccgac accacaggca ttattagaat cggcattacg
    13381 ccacgttgat cacttagatc gccttaactt tgatcaattc aaagtcagcg tgaaagcctc
    13441 agatgtattt ctagcggttg aatcttaccg acttcttgca aaacagattg atcagcccct
    13501 gcatttaggt attactgaag caggcggagc gagagccggt tcggtgaaat cggcggtagg
    13561 cttaggtctg ttgctagcgg aagggattgg tgataccttg cgtgtgtcat tagcggctga
    13621 tcctgttgaa gaggtgaaag tcggttttga tattttgaaa tcgctgcgta ttcgctctcg
    13681 tgggatcaac tttattgctt gcccaacctg ctcccgccaa gaaattgatg tgattgcgac
    13741 ggtaaacgag ctagaacaac gtttagaaga cattatcacg ccgatggacg tttcgattat
    13801 cggctgtgtg gtaaacggtc caggagaggc gttggtgtct gatttagggg taaccggcag
    13861 caataaaatg agcggctttt atttagatgg cgttcgtcaa aaagagcgtt ttgacaacgc
    13921 aaaattaatc gaccaattag aagctaaaat tcgtgccaga gttgcacaac aacataatcg
    13981 tatagatatt gaacaaatag gataaatata gtggcaaaaa caattcaagc aattcgagga
    14041 atgaacgact gctcaccaag tgagtctcca ttatggcaat gggttgaaca gaaagtgcgt
    14101 aatgtgctgg caagttacgg ctattcggaa gtacgtatgc cgattgtaga aagcactccg
    14161 ttatttgccc gtgccattgg cgaagtaacc gatgtggtgt cgaaagagat gtacacgttc
    14221 tgggataacg atgagcaatt aacgctccgc ccggaaggta cagccggttg tgtgcgtgca
    14281 gcgattgagc gtggttggat ctacaataat gagcaacgct tatggtatat ggggccgatg
    14341 ttccgccacg aacgtccaca gaaagggcgt taccgccaat tccaccaagc cggtgttgaa
    14401 gtgtttggca ttgcaaatcc ggaaattgat gcggagttga ttattctcac cgcacgccta
    14461 tggaaagagt taggcatcga tcaacatgtt tctttgcaac ttaactctat cggctcgtta
    14521 gaagctcgtg caaattatcg ctcagcatta gtaaaatttt tagaaaatca caccgcttta
    14581 atgaacgaag aagagaaaga gcgtttggtg aaaaacccgc tacggatttt agataccaaa
    14641 aacgaagcac tacaaaatgt attaaacgat gccccaaaac tgctcgatta tttagatgat
    14701 gacagccgtg aacattttac ccaactttgt gccttacttg atgcaatggg aatccgttac
    14761 gaagtcaatc caaaattggt gcgtggttta gactattaca ataaaaccgt gtttgaatgg
    14821 gtcacttcag ccttaggctc acaaggcacc gtatgtggcg gtgggcgtta tgacggctta
    14881 gtcgaacaac tcggtggaca cgcaacccaa ggcgttggct ttgcaatggg cttagagcgt
    14941 ttagtgctgt tggtacaaga ggtgaataaa gagattgatt taccaaaaac ggtggatgtg
    15001 tatatcgtat tctccggtga aggggcaaca ctaaatgcct tccaacttgc agagcagatt
    15061 cgtagcgaat tgccacacgt tggcgtaatg acacactgtt ccggcggtaa attccaaaaa
    15121 caatttaagc gtgcagataa agtagaagcg caaattgcgt tagtgattgg cgaaagcgaa
    15181 gtggctgaaa agcaagttgt tatcaaagat ttacgttcag gagcagaaca aatcacgatt
    15241 gctcaatcag agctgattgc tgagctatct aaacgatttt aggagaaaaa gatgagtaac
    15301 gaatatttaa ataaaaccga agagcagcaa tttgaagatg ccaaaaattg gtttaaagag
    15361 aacgggacac cgattttggt ggcgattatt ttagcttgtg cggcaactgc cggctggaat
    15421 ttttggaaaa atcaccagct tgaaacggca caaaaaacat ccgcttcata ccaaagcgtg
    15481 atggagagtt atttgcaaaa tccaagcaaa aatcaaccgc ttgttgagaa atttattgcc
    15541 gataataaag attcaagcta tgccgctttt gcccaatttg aagtagctaa acaagcggtc
    15601 gaaaaaggga atttttctgc ggcaaaaaca gcgttacagt cagttttgac ttattcggat
    15661 tcaaccttac aatctatcgc tcgttttcgt ttggctcaaa ttgacttcca actaaaatct
    15721 tacgatgaag cactggcaag tctggctcaa attcaagata aagcgtggga attgcgtaag
    15781 caaattctaa caggcgatat tcttgcagca aaaggcgata ttcctgcggc gaaaagtgct
    15841 tatgagcaag ctaaaacgac cgcaaatcct caggaacaaa ccttaattga tgtacgtttg
    15901 aataacttat aaaaacaaag cctgattgaa ataaaatcaa tcaggctttt ttgttggttt
    15961 agtgttgctg tgaattataa acgcattggc ataatcacat attcggcaga gctgttgtcg
    16021 caatcttcaa ttaagcaact agaacttgaa tcaactaagc taaaacgcac acgttggcat
    16081 tttaaggtgt ttaacacatc taatacatag ctaacgttaa agccgacttc catttccggg
    16141 ctgtcgtagg caacatcaat gatctcttcc gcctcttctt gctccggatt gtttgcggta
    16201 attttgagta aattattgct taaggttaaa cgcacccctc taaatttctc attagaaaga
    16261 atcgctgcac gcattaatgc ccgtttaagg gtttcggttt ccgcttctag aatgcgatct
    16321 gcattgcgag gcagaactcg gcggtaatcc gggaatctgc catcaatcag tttagaggta
    16381 aatacaatgc cgttcattgt aatacggata ttgcttgaac cgatttccaa acgcacggtt
    16441 tcatcgttgc tggcaaccaa gcgggaaagc tcaagtacgg ctttgcgtgg cacgataacc
    16501 gaatgagtca aaagctcttg atttagcacc attgtgcaaa ccgctaaacg gtgcccatct
    16561 gtggcaacgg tgcgtaataa attgccttcg gtttcaaatt tcattccgtt taagaaataa
    16621 cgggcgtctt ggtttgccat tgagaattgg gtggcatcaa tcagacgggc aagggtagat
    16681 tgatcaatcg agaaatccac ttccggtttc caatccatca aattcgggta atcacttgcc
    16741 ggtaatgtag ctaaactaaa tttactacgt cctgctttga taatggcttt atcttcttca
    16801 aattgtaccg aaatcacgct gtcatcaggt aggcttttac tgatatctag gaatttttta
    16861 gctggaatgg taaattttcc ggcaaaatcg accgcttgta gcagttgtgc ttgggtggtt
    16921 aattccactt ctaaatcggt accggttaaa gatagacgat taccttcaat ttctaataaa
    16981 agattgttaa taacaggcaa agtcggacgg ctacttaata cgccacacac ctgttgtaaa
    17041 ggcttaagta attgttctct ggtaatggta atttgcataa tcattccttc atcgggctaa
    17101 gatgataatt tgcgtgttaa atggatataa tcttcttgga taccgctttc ggtatcgcgt
    17161 aattcattaa tggttttgca ggcgtgcatc acggtagtat gatcccgacc gccaaattcc
    17221 cgaccaattt ccggcaagct gtggttggtt agctcttttg ccagtgccat tgccatttgg
    17281 cgaggacggg caatgcttct tgcccgactt ttcgatttaa tatcggcaac ttttatgccg
    17341 taatattcgg ccacaatgcg ttgaatattt tcaatcgtaa tcaagtaatc aaaagaggca
    17401 aacagatctt gcaaggtttc acgcaccgca tcaaccgtaa tcgggcgaag ggtcaatttt
    17461 tgccacgcaa tcacacggtt taatgctccc tccaattcac gcacattggt tcggagtttt
    17521 tgccccatta aataggcggc atcttcttgc aaatctgctc cacgttctaa ggctttttgg
    17581 cgaagaattg ccactcgggt ttccaattca ggtggctcaa tggtcgcact aataccgccg
    17641 cttaaacggg atttaatcgc tgtgtcaatt ttatcgatat tttttggcaa aacgtcagag
    17701 gttagaataa tctgctttct ctgctcaaat aaagcattga gtagatgtaa aaactcttct
    17761 tgtactttcg gtttattggc aagaaattga atatcgtcaa tcattaacac atcaagcgag
    17821 cggtagaatt ttttgatttt ttccgcatcg ttattggaac tgttgatcgc cttaataata
    17881 tcacgataaa aacgttccaa atgaatatat agcacccgag tacccggtgt gcgtttaact
    17941 aattcattgc cgatagcgtg taataagtgg gttttgccca aaccggtgcc ggcataaaac
    18001 gagagtgggt tgcaatggct ttcgcctaaa ttatccacca cttgttgagc cactaattta
    18061 gctaattggt ttgagcgacc ttgtacaaaa ttatcaaagg tttgatttgg atttagcccg
    18121 gttttaaagc cggtattgct gaattctgaa ctctcgtttt ttagatttgg gctgaccttt
    18181 ggctgttctg tcggtttaat cccaactttt aacgtaacca ccaaattatc atttttcgcc
    18241 aaaaaacggg caagctcggt aatttccgat aaaaatttat cttttaccca gttttcaaca
    18301 aattgatttt gtgcataaag tgtaagttcc ccattctcag aactcgcttg cagaggacgc
    18361 agccaagtgc tgtaatcagt tggtgagact ttcgtttgta agtgattaag gcaatcagac
    18421 caaagggaag acacaatttg ctccaaaatt attgttatta aaggtcataa tgatacctga
    18481 aaaaagggga gaaatcttgc aaatttttga gagattttat gggggcttgg aagcgatttt
    18541 aattggcgaa caagcggtcg ttttttgttg aaatcttgca aattgctaac aaaaaatgac
    18601 cgcttgctta gtatgatgtg tgatggagtt gattaaatat ccgtattctc cggcaagaac
    18661 ccaccgcttt ggtgagccca aagtctggcg taaacaccgt tttgagcaag caattcttcg
    18721 tgcgtgcctt gttcaacgat ttcgccttta tctaacacga taagtctgtc cattgccata
    18781 atggtagaga ggcggtgggc aatcgcaacc acggttttac cttccattaa ttgcgtgaga
    18841 ttttcttgaa ttgccacttc tacttcagag tctaacgcac tggttgcctc atcgagtaat
    18901 aaaatcggag cgtcttttag catcactcgg gcaatcgcaa tccgttggcg ttgtccgccg
    18961 gaaagtttta cccctcgttc gccaacgtgt gcatcaaaac cggttctgcc tttggcatct
    19021 tgcaggtttg gaataaattc actggcggca gcttgttcaa cggctttgat catctcttct
    19081 tcagtggcgt ttgggcgacc gtacatcaag ttttcacgca cagagcggtg taacagcgag
    19141 gtgtcttgag ttactaaacc aatttgtgag cgaaggcttt cttgggtaat atcacggata
    19201 ttttgcccgt caatcgtgat tgaaccgtct tgaatatcgt aaaaacgcaa taataaattg
    19261 gtgagcgttg atttacctgc accactacgc ccgactaagc cgactttttc ccccggtttt
    19321 atagtgaggt caaaatcttt cagtagcggt tttttcggat cgtaggcaaa atccacattc
    19381 tcaaatttaa tttcgccttt ggttacattt aacggtttcg catcgatttt atctaccaca
    19441 ttgtgtggtt tggaaagcgt aatcataccg tcttgtaccg tacctaaatt ttcaaataga
    19501 cgagcaaatt cccacataat ccattgtgat aagcctttaa tgcgtaaagc caaagcggtt
    19561 gaggtggcaa tcgcccctgc agttactacg cttgaacccc aaagccataa accgataccc
    19621 gcagttgaaa ttattaatgc catcgaggtt agattagtta cggtttcaat tacagtcact
    19681 aaacgcatct gtttatgcac tgtcaccata aatccttcca tcgactcttt cgcataggca
    19741 gattcacggt tgccgtgcga gaagagtttg acggtggcaa tgttagcgta agcatcggta
    19801 attcgaccgg tcattaaact tctggcatcc gattgctctt gagcagcttg ggctaatttc
    19861 gggacaaagt agataatggt tgccgctaat gagatgaccc ataaaataaa cggcacgaat
    19921 aaccagccgt caagttgtaa taaaatcacg ctggaggtgg tgaagtaaac cagcacatac
    19981 accaacatat cggcacaagt cataatcaca tcacgcacgg aaagggcggt ttgcattact
    20041 tttgcagaca ctcttcctgc aaattcgtct tgatagaaac ctaaactttg cccaagcatt
    20101 aagcggtgga agttccaacg caaacgcatt ggaaataccc cttgcagaga ttgaaagcga
    20161 atgctgctgg caaggtaaac aaacaccact gcaagtaggg caataaaaaa cataccgata
    20221 atcgtccagc ctttttctgc ccaaagttct gttggcgagt atttattgac ccaatcgact
    20281 aaatcgccca taaagcgaaa cagaaccgct tcgataatac cgacagctgc aactaatacg
    20341 gtcagtagta agatataaaa ccgcattcct ttagtggcat cgtaaataaa aggaatgaga
    20401 cctgattttg gagttttcgg catttcattt ggataggttt ccacccttgc ctcaaaccat
    20461 ttaaacagtt tttcaaacat aaatttgtga tttccgaata aaaatgcagg ggcaaatagc
    20521 catttgcccc cgaaaaaatg tgaaaaaatt atggattaag taatttttcg tctaaggcta
    20581 aatcttcgtt gcgatttata ccaatgccgg cagctaatac gttgcgggca atttgatgtg
    20641 cttcttttaa agaatgctct ttgtaagagc cacattgata ttcattcagc tcagggattg
    20701 ccgatacatc aggaatttta tgtaacgcat cttccattga tgccgtccaa gctttgacaa
    20761 cttcttctgc tgaaggcgat ccaatcagtg acatataaaa accggtacga caacccattg
    20821 gtgaaatatc aatgatctcc acttgttcgc tattgaggtg atcacgcata aaaccggcaa
    20881 aaagatgttc catcgtgtga atcccacgca ccggtagaat atcaatattc ggacgacaga
    20941 aacggagatc gaacacggta atggtatcgc ctttcggtgt ggtcattgtt tttgcaacac
    21001 gcacggctgg tgcgttcatt ttggtgtgat ctactttaaa actatctaat aaaggcattt
    21061 tttactccat caatattatt ccgcaattcc ttgatcccaa gccggggctt catcaggtag
    21121 tttgcgctgt aagaaaaatc gtctgtttgg ctgggcttga ggcttcacca ctttagtgta
    21181 aggggtagag aactcaatac cgccatttaa taactgcgac attgtgccgg agttcatact
    21241 tacaccttgc aggctcacgt ccatagtgta acctgaagct tgccagaatt gggtattggt
    21301 tctgactaag tgcttgtatt tatcttgaat attgacataa ataagcactc gatcgcctaa
    21361 ctcacttagc cctaaacggc tgactattcc cacctgcatt ccacggtaaa gcaccggtgc
    21421 ttccggctga ataccgttag cattggtggt ttcgacaata atggggaaac cgttggcata
    21481 ggtggttttt accgtatcgg tatctgcaag aacaaattgg ttttgagctt gccctgaacc
    21541 gacatcaacc gtaatgtaat tttgtagtgc tgcatctaaa tttttaaagc cggaggtact
    21601 gatttcaggc gagataacat taaatttact gccggctttt gcaattaacg gatagtattt
    21661 cctttgaatg taagcggtcg cttttatctg tttttttgca ttttgtagct caagtttttc
    21721 aatttgacct acggttaagc ccatatattt aatgtccatt ccttcgctta acttactcgc
    21781 atcttttgca atcagcgtga gataagtatt gcccgaagtg gctttctcct tacttgcata
    21841 aagcgtttta ttgccttttg aaccgccatc atcaaagctg atcgcccctt ttaaggtacg
    21901 cattaatgga gctgtagtga tattcacgcc tttgagtgac acatcaacac tcgttgccgg
    21961 ctcaatccag aaacggcttt tctcggttaa tagatgacga taatttggct ggataaatag
    22021 ctcaacctca aatttttgtt gtttcggggt tatttttaac acctcgccga cctgaaaatc
    22081 acgatatagc accaaagagc cttcgctgat accagataat gaatctgccg aaagggtagt
    22141 ggtggctttt ttatctaagg tagccatgcc tgattccgca ctttctatat ctttataaag
    22201 tgcatattgt tttttcgggc taccgtcatt tttaccgtta attaagcgaa caccgccttt
    22261 taaccattca gatggtgaac cggcgtgaac tcttaaccca tctagcccca ccgacatatc
    22321 aatgttggat atcgcaacaa atttgctgtt actcccaatc aggttgcgat aaggcggata
    22381 aataatgaca tcaaaacgta ctttgtctaa ctctaggcta cgtttgacga tttctccgat
    22441 ttgcacatcg ctatagtaaa tcccctgatt ggtatctacc ccataggctt gaggagcaat
    22501 taagctaaag ctaagtaaat tcggtaaact taatagataa tcggcttcgt tttgtaccac
    22561 aaattccgat tgaggttctc cttcccccgg gtgaacctca aaatagacac cacgcagcag
    22621 ctcacctact ttcgtcagct gctctgtgtt taaggagaat ttcggctctt tgagcaagat
    22681 tttagtttgg gaacgtagta aattttcata acttgggtca attaataaaa ccccatcaat
    22741 ctgtttatgc tgccctgatt cttgctgtgg cacaccgttg tcttttactt gcggtaattt
    22801 tagctgcgaa agcataccaa tttgcacatt ttggtgaaaa acaccagtct cattaatttt
    22861 taaattatgt gtaagcggta gttttacgtt gatttcaatt ccacgtttag ctgatttcaa
    22921 atccggatat agctcaaatt tctgtccttg ctcggcaatt tccatattat caggcgaatc
    22981 aaaagcaacc gcaccttgta ctaccgaggc aaggctgtcc atattgattt taataccttg
    23041 taaatttaca tcagcgctaa taccgctaat attccaaaat cggctctctt tttttactaa
    23101 atgagcgtat ttttgattaa tgacgacatc aatttcgatt tttttctggt ctttggtaaa
    23161 acgataatcg gcaatattac ccactggcac tttacggaaa taaacactcg ctccgacagt
    23221 aatagagcct atgtcatcag agattaaacg gatcagtaaa tcgccatcgc tcacggtaat
    23281 agccggagga tcttcttctg caataaattc atcaacgaaa tcgccttcac cgggaagtag
    23341 ggtaatatag ttaccagaaa caatcgcatc taagcctgaa acgccagcca aagaagcact
    23401 tggttgcact aaccaaaatt tagtctgttt gcgtaaaata cttttggctt cagggtttat
    23461 ttctgcttgc acttccactt cttttaaatt atcgacaaaa taaacacgct taacctgacc
    23521 aatctgcaag ccttggtaac gaatagcggt ttttccggca gtaatgccat cacctttact
    23581 aaatcgaatc gtgattgttt caccttgctc ttttaaaatt tggaaaaata gcaaagcacc
    23641 aataataaaa gcaactattg gtaacagcca aaaaggagaa attttgcgag gctgccggat
    23701 ttgggcatct acaacagtgt gggtattttc ttccatcgtc attttaaatt agggaaacct
    23761 atatagaaca ataccgaaga cccaaaggga cttcggtaat agaaataagt caaaataaga
    23821 aatattattt tttctcatca cagttggtta aattactgca tttaccatac agatataaac
    23881 tgtggttagt caattccatt ccgtgttttt cactgatttc acgttggcga cgctccatat
    23941 caggatcttt aaattcgaac accttaccac aatccataca aataatatgg tcgtgttcgt
    24001 ggttcatatt taattcgaat actgctttat tcgcatcgaa attatggcgg gttaaaatgc
    24061 cggcttcttc aaattggttt aagacacgat aaaccgttgc taaaccaatg tctgagcctt
    24121 tttctaacag aatcttataa atatcttctg ctgcaaaatg ttgcatttca tcacgaatat
    24181 cttgcattaa tgcaaggata gtcaaacgag gctcggttac ttttaagcct acctctttta
    24241 aacgtttaat atttgcttca gacatatatg ccacttattt atctttatcc aaaatagtta
    24301 ttatgcgagt tggtctaagc acatttcttc tttcaactgc tcgcaccatt tattaacacg
    24361 ttcagtggtt aattcaggct gacgatcttc atcaatacat aagccgacaa aagtatcatc
    24421 atcaactaag gcctgagaaa cctcgaaagt gtaaccggca gttggccaat gaccaacaat
    24481 cacaccacca tttggctcta ccacatcacg cacagtaccc attgcatcac agaaatattc
    24541 tgcataatct tcctgatcac cgcaaccaaa aattgcaacg actttgccgt taaaatcaat
    24601 ctcttttagg gtaggcataa aatcgtccca atcggcttgc gattcaccat aataccaagt
    24661 tgggatccca aacatcagaa aatcgtatgc ttcaatatct tcttttgtgc ttttggcaat
    24721 gtctcgaata tcaattaatt cagcccctaa ttttttctga atcatttttg aaatattttc
    24781 tgtattgcct gtatcgctac cgtaaaataa acctacaact gccattgcta ctacctattt
    24841 gtgagataat tatttagaat tgtttcaatt aactgcccgc gtgaaacacc ttgttcagac
    24901 gcctgttcct ctaataactt tactaaattc gaatgcagtt ttaattctac ccgttttaaa
    24961 ccggaagatt tatctcgttt tagttggtta cgtttattga ttcgaagttg ttgttctcta
    25021 tcaagaggat ttgtacgagg acgcccaact tttggtacag tcgcaaacag atctaaggtt
    25081 atacaatctg aatcttgttt tgccattttg ttttactatt gggctttagc taatcctcag
    25141 ttttaatgag aatgataagc tacttttaaa gtgtgaacta tatcaaaagt tcaatcattt
    25201 gaaaagtaaa ttacaggcaa aacaagcggt gtttttaggt ttaaaatttg caaaaaccat
    25261 aaattacaca ttatgagtta tgatttttct gaagcgtgaa attagcttat aatgaaaccg
    25321 aataacgtta tgaaaaagga gatagtgtgt cgaatatcca tttagcgatt gccgctgatt
    25381 ttacgctggc agaaaaatta cttgaagcat tagcaaatca agatttaggg attgaaaata
    25441 tttcagccgt tgagcttgag ccgtttggtg aagagcagaa tttacgcttt ggggcaaaag
    25501 cagtcgcaca atatgcgtta gatgaagtaa attgggcgga atttagccat gttctatttg
    25561 ccggcaaaat ggcacaagcg gaagtgttgg cagaagcggt gaaagccggc tgtgtgattt
    25621 tagatttata cggcattacc gcactcatcg gcgatgtacc ggtagttgtg ccaagtgtaa
    25681 atgatgaaaa tgtcgcaaat ttgcgtgagc gaaatatcgt tgctttagcc aatccgcaaa
    25741 tttcacaact ggcgttagcc ttaaagccat tgttgaacga gccgttaaaa caggtgtggg
    25801 taacctcact tttaccgtct gcctattttg gcgatgaaaa agtcaaggag cttgccggac
    25861 aaactgcccg tttgttaaac ggcattccgt ttgatgaaaa tgcggaacgc attgcctttg
    25921 atgttgtgcc ggctaatgtg caaggagaag agaaaagtct gccgttctca aaagcctttg
    25981 aactgcaaat tgcaaaagtt ttaccaaatt tgaccgcttg tactaccttc cacagcgtgc
    26041 aagtgccggt cttttatggg gtttcccaaa tggtgtcggt gcagtctgaa tatcagttag
    26101 atgctaatgc gttaagtgaa gcttggaaag ccgaaaattg gctgaatttt aatgaaaatt
    26161 cagtgattac agcggtgaaa aatggcgaaa acgaagagca aaatgcgtta gaaatcagtc
    26221 agttattggc gaaatccgaa caggaagtgc agttctggac ggtcgccgat gaacagcgtt
    26281 tcagtctggc atttttagcg gtgaaattac taaaattagt tttagcgtat taagtgcttg
    26341 caaaagtatt tattccgtga taaaaatcgt caacgcccga gcaaccgatt gcttgggcgt
    26401 tgtcattttg tttaaacacc gaaggtctta tgttagaaaa attatttcag ctcaaagcaa
    26461 aaggcagtaa tgtaaaaacc gaaattatcg ccggtattac tacctttttc acaatggttt
    26521 atattgtttt cgtcaatccg tctattttag gcgtggcggg aatggacacc caagtagtgt
    26581 tcgtgactac ttgtttaatt gccgcttttg gtactatcgc aatggggtta ttcagtaatt
    26641 taccgattgc tcttgcaccg gcaatgggct taaatgcctt ttttgcattc gtagtggtgc
    26701 aaaaattagg ttactcgtgg caagtgggta tgggggcgat tttcttaggc tctgtcggct
    26761 tattcctatt aactgtatta caagttcgtt actggtttat gtctgcgatt ccacttggtt
    26821 tacgtgtagg tattggtgcc ggtatcggtt tattcattgc cctaatcggt tttaaaaata
    26881 tgggcttggt ggtgccaaat ccggcaacgc ttgtggcact aggtgatttg cacgacccga
    26941 aagtgttaat ggggatttta ggctttttca tcattgttgt attagcggcg aaaggtattc
    27001 actcaggcgt gttaatttca attgtgattg ttaccgctct tgccttagcc tttgacccgg
    27061 cggtgagctt taacggcata atgtctatgc caccaagcct tggggcagtt gtggggcagg
    27121 ttgatattgc cggtgctttt gatgttgcct tactcgggat gattttctcc tttatgttgg
    27181 taaacctgtt tgactcttcc ggcaccttaa ttgcggtgac taccaaagca ggctttgcgg
    27241 atgaacaagg gcgtttcccg aaaatgaaac aagctctgct agtagatagt accgctgcaa
    27301 tggcaggctc ttatatggga acttcagcga tttctaccta tattgaaagt ggctccggcg
    27361 tttcagttgg cggtcgtacc ggcttaactg cggtggtagt tgggatctta ttcctattaa
    27421 ccattttctt ctcaccactt gcagggttag tacctgccta tgcaactgcg ggggcattgg
    27481 tatttgtagg aattttaatg gcatctagct taattgaagt aaaatgggac gatttaactg
    27541 aagctacgcc ggcatttatt actaccgcaa tgatgccgtt tacttactcc atcactgaag
    27601 ggattgcatt cggctttatc agctactgcg taatgaaagc ctttacaggg cgttggaaag
    27661 aaatcaacct ttctgtttta gtggtttcac ttctctttat tgctaaattt gtgtgggtgg
    27721 gttaagctct acccccctct ccctgatttt tcttctaaac gaagaaaaat ctatccctct
    27781 cccacaaagg ggagagggta tttgattcat tatctatgtg tttcgtgtat tccgaggtaa
    27841 aacaatgtct aattcagttc aaaaacttct ttttatcatc aattctgctc cttacggcaa
    27901 tgaaacgttt ttcagtgcgt tgcgtttggc attacaaatt caagaacaac ataaagccaa
    27961 tacggaaatt aaacttttct taatgtcgga tgcagtcacc gcagggctgg caaagcaaaa
    28021 tccggcagag ggttatcata ttcagcaaat gctggaaatt ttaaccgccc aaggggcaaa
    28081 cgtaaaatta tgcaaaacct gtactaatgc tcgagggatt acagatttgc ctttagccga
    28141 tggggtagag attggcacat taattgaact ggcagattgg acaattcaag cagataaggt
    28201 actgaatttt taatgcaaaa tattgatgtt gtggtgattg gtgccggtgc ggcagggctg
    28261 ttttgtgctg cccaactggg gcaagctggc aaaaaagtgg tggtgttaga cagcggtaag
    28321 aaagtcggac gtaaaatttt aatgtctggc ggtggttttt gcaattttac gaatttagac
    28381 gtaagtgccg gaaattacct tagccaaaac cgccattttg tgaaatccgc cctttcacgt
    28441 tatacccaat gggattttat ttcgcttgtc agccactatg gcattagcta tcacgaaaaa
    28501 gagctagggc agttgttttg tgatgaaagc tcgcaacaaa ttgtcgattt actacaagca
    28561 gaatgcaaca aaggcaaggt tgagattctg ttacggcaag cggtcatttc tgtggaaaaa
    28621 gttgcaaatt tttttgaaat ttcgaccgct tgtggcaagt tccaatccga acacttagtg
    28681 attgcaaccg gagggctttc aatgccggct ctcggggcaa gcccttttgg ctatcaactt
    28741 gccgagcagt ttggtattcc tgttgtgcca ccacgtgcaa gccttgtgcc ttttacttgg
    28801 aaagagagcg ataaatattt tgccgagctt tccggcattg cactgccgat tactgtttcc
    28861 gccaatggca aaagttttag caatcagatg ttgtttacgc acagaggctt atccggcccg
    28921 gcaattttgc agatttccaa ttattgggaa ttgggggaaa cggtagagat tgatctgcta
    28981 ccttcgcagt ccattaccga tatattgagc gaactacgcc aatcttcgcc gaaattacag
    29041 ctaaaaaccg tattatctcg ttatttacct aaaaaattgg ttgaagtttg gctggaacag
    29101 aaattgctga ccgataaagt gattgccgat ttgagtaaaa aagatctgac cttattagag
    29161 caatttatcc accattggca tttcttgcca aacggcacgg aaggctatcg tacagcggaa
    29221 gtaaccaaag gcggtgttga taccgactat atttcatcta aaacgatgga agcgaaaaat
    29281 acagcagggc tttattttat cggcgaagtg ctggatgtta ccggctggct tggtggttat
    29341 aatttccaat gggcgtggtc atctgctttt gcctgtgcag aagggattat tgaaaaaagc
    29401 aaataactaa aaaagcaaat aactaaaaaa ccaaacaaaa aggcgaacac aattgttcgc
    29461 cttattttat gctgaattat cttgcacgga aaataatgcg tgctttgctt aaatcgtatg
    29521 gagtcatttc aaccgttact ttatcaccgg ttaaaatacg aatgtagttt ttacgcattt
    29581 tgcctgaaat atgtgcggta acaatatgac cgttttctaa ttccacacgg aacattgtat
    29641 ttggtaaggt ttctaaaatc gtaccttgca tctcaatgca atcttcttta gccatttatt
    29701 cctctttaaa gttttaattt ttatatgatg ccattcggcg aaaaacggcg gatattatac
    29761 gcttattcgc tcaaattaca atcgtttatc catttgagtg taaactattt acgcttaatc
    29821 caacggcgac gtgagtgaaa acgctgggtt tgggttttta cttgactcat aagtggtttt
    29881 gggcttatct gtacatgatg aattttacga cgaaaatagt agttaatgct acttgccaac
    29941 aatatacctg tgagtagcaa aataattatt tccccataaa gttgatgaaa ttgttgctct
    30001 actcgtgctt tagtagtttg cccatattct gcatcaaacg tgacgcgtaa aaagccaacc
    30061 aacgcctgtt gagaaaatat tggctcaaca atttgctgag ttttggcaga ttgctctgaa
    30121 tcgagcaata cttttaaatc tttcgcattt tggctttgag ccagtagcac gccatttggt
    30181 gaatagatat tggcatcaat aataaaatct tctttggcaa aactatccaa cgcatcaacc
    30241 agctcatcgg ttttggcatt tttaactaac aaaaacgaaa aaatatttgc ttgctggcga
    30301 accaataggt gtgaaaggtt tgatacttga ttaatgctgg ccaattgtga gcctagctta
    30361 aattggttta cgcccattaa aataaccgcc acgatcccac agcagagtag cgtaatccct
    30421 gccagcaaaa gcgttttcgt tattttttca cgactaatgt acatcgaaat tccctcaaaa
    30481 tgatgcgtga ttgtagcacg cttttctgtt agattagtgc agtaaattta aacaacctaa
    30541 aataagacaa tgacaaacac aatttttatc tattcaaaaa ccttaaacga gcgtgaaatt
    30601 gaacagtttt cacaacaaac ggcagcaatt ttgctgaaac aagcggtcta tttagactac
    30661 aaaattgcat ttttttccac aaatttaacc gcttgcgagc tgcgtgaaac ggcacagaaa
    30721 atcaatgcgg atattagcga tctcactatt attccaacct taaaccaagg cggtttgcta
    30781 ttaatggata tggattccac cgctattaaa attgaatgta ttgatgatat tgccaaactt
    30841 gccggcaccg gcgaggtggt gtccgccatt actgccagtg caatgcgggg cgagctggat
    30901 ttcgagcaaa gtttacgcaa gcgagtcggc acgttggaaa atgcatcgga aagcattttg
    30961 caaaaagtgc gggaaaatct accgcttatg gacggctttg agcagatggt tgctattctt
    31021 aaggaacacg gctggaaatt agcgattgcg tccggtggat ttgattactt cgccgattac
    31081 ttaaaacaaa aatacgggtt gaattttgcg gtctctaacc aactggaaat tattgacggt
    31141 aaattaaccg gcaaggtgtt aggcaaagta gtggatgctc aacataaagc cgatacctta
    31201 cagaatttag cgacaacctt taatattcca ccaaatcaat gggtggcagt cggcgatggg
    31261 gcaaatgact taccaatgtt aaaaaccgcc agtttaggcg ttgctttgca cgctaaacca
    31321 aaagtgcaag cacaagctga ttttgtggta aacttcgggg acttaacggc attatgttta
    31381 ttacttaatg ccaatcattt atttcaacat taattgagag gaacaacaat gccatcattt
    31441 gatattgtat ctgaaatcac gatgcacgaa gtgcgtaatg cggtagaaaa tgccaatcgt
    31501 gtattaagca cccgctacga tttccgtggg gtggaagccg ttattgagtt aaatgaaaaa
    31561 aatgaaagca ttaagctcac gaccgaatcg gatttccaat tagagcagtt aattgagatt
    31621 ttaatcggct cttgtgtaaa acgtgggatc gagcatagtt cattagatat ccctacagaa
    31681 agtgagcatc acggtaaact ctattccaaa gaaattaagc tcaagcaagg gattgagtca
    31741 gatatggcga agaaaattac caagctgatt aaggattcta aaatcaaggt tcaagcccaa
    31801 attcaaggcg agcaagtgcg tgtaacgggc aaatctcgtg atgatttaca agccgcaatt
    31861 cagctagtga aaggggcaga tttagggcag ccattccaat ttaataattt ccgtgattag
    31921 caattcctgc aattaatgat gacaagtgga aaaattcagc aaaatttgac cgcttgcatt
    31981 aataattcaa cataaaagga agagatgatg agcgagcaaa cagaaaagaa aggctggttt
    32041 aaaaaagccc ttgagaaata tgatgccttt tgcgatgagc taggggtaaa tcaaggtgct
    32101 tgccgaggtt gtgtccctgt ggtgaagttt gaccctgaac cggaaaaaga gcagccagaa
    32161 aaatcagaaa ataaaacata gaaaaaatgc acaatggtaa gatacattgt gcatttttta
    32221 taggattttt aattggcgtg atgatgggca aaatattgct taactccgcc atctttcttg
    32281 caaggattct gaatatcagt agagtaacta ccgttaaaac aaagagcagt agcattcgat
    32341 ggtttaatct tttcctgttt agttagggct ggcggttgag tattggtttc actaatatag
    32401 atcgttttag gttgagaata gtctatattt ttgtcgccat ttacgacttg aacgggggtg
    32461 ttcgagctgc aagctacaac cgatgctgaa gccaatgtaa gtataatgat atggtgtttt
    32521 ttcatgggta atttccgttt ttatattttt aattgagaga atgttaaaaa gggctgattt
    32581 ctcaaccctt aaagttatgc cttaagcatt tttattaaaa gtttgtccta actgaatttc
    32641 atcatttaat acaggaatta actgctctag ttgatctttt tcaaattcgc tgagattgcc
    32701 gataggtaga actttttcca caccatttgt acctaaacga atcgggtaag caaagaatgc
    32761 cggagaggtt tcgccattgg cattatctac ataagcataa cgaatgacat cttccccgat
    32821 taaggctctc actaaaccaa gtgcaaattc tgctcctgct tgagccatag ataaggttgc
    32881 tgagccacca cctgcttttg cctcaaccac ttcagtaccg gcgttttgga tacgatgagt
    32941 taattgctcg atttgttctt gagtgaactc aagttttaag ccatttactg ttgcttgtga
    33001 aagcagtgga agaatagttg tgccggaatg tccgccaatc acaggcactc ttacatattt
    33061 cacatttacg tctttcgctt cagccacaaa ggtattcgct cgaataacat ctaatgttgt
    33121 aacaccgaaa agtttatttt tgtcatacac accggctttt ttcaatactt ctgccgcaat
    33181 cggaataatg gtgtttaccg ggttagtaat aattgcaatg caagctttag ggcaaacttt
    33241 cgctgctttt tcgactaagt tatgcacgat agtggcattc gtattgaata aatcggcacg
    33301 tgtcatcccc ggcttacggg caacaccagc agaaataacg accacatcgg catcttttag
    33361 tgcctcagtc ggatcttcac ctgcaaaacc ggttactttt acatcagttg gaatatggct
    33421 taaatccact gcaattcctg gagtaacagg ggaaatatcg taaagagata attcagattt
    33481 agccggtaaa ttgagtttta ataataaggc gagtgattga ccgattccac ctgcagcacc
    33541 taaaagggca acttttttac tttgacacat aaaatttctc ctaaatgtta tggaagttta
    33601 gaccaattta gtctaagcca attttttggg cgattcaaac ggcaaatctc atttttgaga
    33661 catagagcaa atttttagct gatttttatg ggttttattg atttatttgc ataaataagc
    33721 aagaattatg aatattttta agtttttgtg aataagagtg tgaaagtgga caagatagat
    33781 agtttatcag aagcgtttaa atcgctgtta aaggaagaaa aattcggctc gcaaagtgaa
    33841 attgttgccg cactacaaga gatgggcttt gataatatca accaatccaa agtttctcga
    33901 atgttatcaa aatttggtgc agtcagaacc cgtaatccta aaatggaaat ggtgtatcag
    33961 ctaccagtcg aattaagtgt accgactacc tccagcccac ttaaaaattt ggtggtagat
    34021 attgatcata atgatgcgtt aattgtggtc aaaaccagcc ccggtgcggc tcaactgatt
    34081 gcacgtttgc tcgattcaat gggtaaagcc gaaggtattt taggcactat tgctggcgat
    34141 gatacgattt ttataacgcc ggtacgcaat gtgcaaattg aaaaattggt gaagaatgtg
    34201 acacagttat ttgaaacatc attatagaat aagtaaagga ggacttaatg ttctccttat
    34261 tttttaggag attattatgc acatttttat aacaggtggt acgggtttta ttgggcgtga
    34321 attaatccag caattaaaat ctgaaaatca ccactttaca cttcttacta gagatacaga
    34381 agcgaaaagt gatgatttac agattaatta ttgctattca cttgatgaac ttgttgattt
    34441 aaatgatttt gatgcagtaa ttaaccttgc cggtgagccg atttttgata aacgttggac
    34501 agacgaacaa aaacagaaat tgattgaaag ccgggttaac ctaacgaata agctcagtca
    34561 attaatgaat gcaagctcta accctccgca tacttttctc tccggttcgg caatcgggat
    34621 ttatggcgat ttgcctcctt ctgcaaattt ttatacagaa tcgaccgctt gttatcaaga
    34681 ttgctttacc aaccggcttt gccaacagtg ggaagccgct gcactaaaag ccgcaagtga
    34741 taaaacccga gtgtgtttaa ttcgtaccgg cacggtattt tcgcccgaag gcggagcatt
    34801 aaagaaaatt ttaccgcttt atcgatgcgg attaggcgga aaacttggtt caggcaaaca
    34861 atattgggcg tggatcagcc gccgggatca cgtacaagcg gtcatttttc tgctcaaaaa
    34921 tgcaaattgt tcgggtgctt ataattttgt tgcaccaaat ccggtgagaa atgaagaatt
    34981 taatcgtatt ttagcgaatg ctgttaatcg cccggcattc tttactgtgc ctgaatttgc
    35041 cttgaaatta ggcttaggcg aacgagcttg tttagtctta gataatcaac agctcattcc
    35101 ggaaaaacta ctcgcagcca gttttgtatt ccaagatccg attttaaccg agaacgtttt
    35161 cttaaaccca taatttaggc tataatgctg tataaaagca cagattaaaa ggtgattatg
    35221 gatttctcat tattattaga cggtttaaat gacaagcaga gggaggcggt tgctgccccg
    35281 attggtaatt atttagtgtt agccggggcg ggttcgggca aaactcgggt tttaacccat
    35341 cgcattgcgt ggctgattgg ggtggaaaat gtgccggaat ccaatattct ggctgttacc
    35401 tttaccaata aagcggcggc ggaaatgcga catcggattg agtacactct ttcccaatcg
    35461 ggcgataatc gattgttcgg aatgtgggtt ggtactttcc acagcattgc caaccgctta
    35521 cttcgttccc actatttaga tgcggattta ccgcaagatt tccaaattat ggataccgaa
    35581 gatcagcaac gtttactcaa acgtttactg aaactgcata atattgatga gaaacatttt
    35641 ccgccaaaac acgttgcgtg gtatatcaac gcccaaaaag ataaaggcaa acgggcaaaa
    35701 gatattgatc actataacga tccgaatgaa aaaaaattgg tggagattta ccaaatctat
    35761 caagatgcct gcgaccgagc cggtttgtta gattttgccg agctgttgat tcgggcttat
    35821 gaactattca aaaccaaatc aaccattttg caacgttatc aacaacgttt tcagcaaatt
    35881 ttgattgatg agtttcaaga caccaacaat attcagtacg acttaattcg tttgcttgcc
    35941 ggcgatgtcg gcaaagtgat gattgtcggc gatgatgatc agtctattta tggttggcgt
    36001 ggggcacagg ttgagaatat ccaacgtttc ttaaatgatt atgacaacgc tcaaaccatt
    36061 cgcttagagc aaaattaccg ctctaccggc aacattttaa gctgtgccaa tgaattaatt
    36121 gccaataacg ataaccgctt aggcaaaaat ttatggacag atagcggtga tggcgagcct
    36181 gtggatattt actgtgcctt caacgaactt gatgaagctc gctttgttgc ctcgcaaatc
    36241 aagcaatgga aagaagacga gggtgatttg gcggaatgtg cggtgttgta tcgcagcaac
    36301 agccaatctc gtgtgattga ggaagcttta attcaagcga atattcctta tcgcatttac
    36361 ggtggaatgc gattctttga acgccaagaa attaaagatg ctctggctta tttacgctta
    36421 atcgccaatc gtcaagacga tgcggcgttt gaacgggtga tcaacacgcc aaccagaggc
    36481 attggcgatc gtaccttaga cacactccgt caaattaccc gtggtcgcca aattacgctg
    36541 tggcaagcaa ttcaagtggc ggtgcaagaa gaacaacttt cagggcgtgc cacttcttcc
    36601 ttattgcgtt ttgtagagct gattaatgct cttgatcaag aaaccgagca gatgtcgctt
    36661 gccgaacaaa ccgattttgt gattaaaaaa tcgggtttat atgaaatgta taagcaagaa
    36721 aaaggcgaaa agggcgaagt tcggattgaa aacttagaag agttagttac cgcaactaag
    36781 cagtttgtga aacctgacga agcggaagag ctgaccgatc ttaccgcatt tttaacccac
    36841 gcctcacttg aggctggaga agcccaagcc tcgcaacacg aagattatgt cgaactgatg
    36901 acgctacatt ccgccaaagg attggagttt ccccgtgtgt ttattgtggg cgtggaagaa
    36961 gggattttcc caagcggaat gagctttgat gaaggcaggt tgcaagaaga acgccgtttg
    37021 gcttatgtcg gcataacccg agctaagaaa aaactgacga ttagctatgc cgaatcaaga
    37081 cggctttatg gtaaagaaga acgccacgtt ccgtctcgct ttattgctga attacctgaa
    37141 gagcatattc gagaagtgag attgagaggc tcaattaacc gagcggcaag ttttaaccaa
    37201 gctaattcat ttgcaaaaaa tccgacaaaa acgaccgctt cctttttaaa cgatgatact
    37261 tggaaaatgg ggcagaaagt gaaccacgct aaatttggac aaggcacgat tattaatgtg
    37321 gagggctcag gtgaagccac ccgtttgcaa gttgcctttg tcggcaacgg cattaaatgg
    37381 ctgattgcca aaatggcaaa tttagagagg atttaggcga ataaaaagtt ttttgcagga
    37441 atatagatgg cgagatatat tgccccttaa ccttaaacta agggtaaata aaattaaata
    37501 atgcaagcta gatataatgt aaagtatcag aaataagata ttaatttaag a
//
LOCUS       DANLRW010000008        37278 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.008, whole genome shotgun sequence.
ACCESSION   DANLRW010000008 DANLRW010000000
VERSION     DANLRW010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 37278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37278
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.008"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(63..440)
                     /locus_tag="PXA71_000336"
     CDS             complement(63..440)
                     /locus_tag="PXA71_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor"
                     /protein_id="HDL5104486.1"
                     /translation="MKNPIEIYQSQDGKTQVSVQFDKETVWLSLQQMADIFGRDKSVI
                     SRHLRNIYQEGELEREATVAKNATVQIEGAREVVRLKDYLVKGYALNERRLQERGIEF
                     EQVIGLLSQYTGCLSLVGGRKFA"
     misc_feature    complement(462..584)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(714..1703)
                     /gene="rsmC"
                     /locus_tag="PXA71_000337"
     CDS             complement(714..1703)
                     /gene="rsmC"
                     /locus_tag="PXA71_000337"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HDL5104487.1"
                     /translation="MLSLESEVLERHLALFENKSVLLFGDVRDDFARQLQSRAEKVAV
                     FSSYFDYARHHSEVEFGLECGLSAELAVFYWTKNKQECQFQLLQWLSQCQAGQEMLII
                     GENRAGVRSVEKLLEPFGNIAKIDSARRCGLYHFELQTVPTFDCKKFWKSYRLQDLDV
                     FDLPAVFSSAELDNGTKLLLSTFDKADRLKGKVLDLGCGAGVIGATLKQQFPKIKLTM
                     SDIHAMALESGRRTLAENQLEGEVVASDVFSHINERFDLIVSNPPFHDGVDTAYRAVE
                     ELIFQAKNHLTKGGELRIVANAFLPYPDLLDKAFGKHDVLAKSTKFKVYSART"
     gene            1833..2255
                     /locus_tag="PXA71_000338"
     CDS             1833..2255
                     /locus_tag="PXA71_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HDL5104488.1"
                     /translation="MNRRDLLLQEMGISQWVLTNPQVLKGDAQIRLNNAVKLVVVCEE
                     DHQHSRLFADILRALKLKNSEYQWLTGEQSQRLVFEHSPIFWLIQAEEQAVKMAKSFT
                     NQTAWKNESWQDLAKSTTKRQLWQQIDTFSAQFGEQRD"
     gene            2248..2685
                     /gene="rimI"
                     /locus_tag="PXA71_000339"
     CDS             2248..2685
                     /gene="rimI"
                     /locus_tag="PXA71_000339"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HDL5104489.1"
                     /translation="MIEQIQAEDFEQLFEIEQQAHLVPWSKGTLLNNQGEKYLNLKVV
                     EQNKIVAFAISHIVLDEATLFNIAVAPDFQGKGIGKRLLSELILQLQQRKLTTLWLEV
                     RESNHSARKLYDSLGFNEVTTRKNYYPTPNGSKENAVVMALYL"
     gene            complement(2734..4581)
                     /gene="typA"
                     /locus_tag="PXA71_000340"
     CDS             complement(2734..4581)
                     /gene="typA"
                     /locus_tag="PXA71_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDL5104490.1"
                     /translation="MQNVDISKLRNIAIIAHVDHGKTTLVDKLLQQSGTFGETRGDVD
                     ERVMDSNDLEKERGITILAKNTAINWNGYHINIVDTPGHADFGGEVERVLSMVDSVLL
                     VVDAFDGPMPQTRFVTQKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLGASD
                     EQLDFPIIYASALNGVAGLEHEDLAADMTPLYEAIVKHVQPPQVELDAPFQMQISQLD
                     YNNYVGVIGIGRIKRGSVKPNQAVTIVDSEGKTRQGRIGQVLGHLGLQRFEATEAFAG
                     DIVAITGLGELNISDTICDINAVEALPALSVDEPTVTMFFCVNTSPFCGQEGKFVTSR
                     QILERLNKELVHNVALRVEETSNPDEFRVSGRGELHLSVLIENMRREGYELAVSRPKV
                     IYREEDGKKQEPFEQVTIDIEEQHQGSVMEALGIRKGEVRDMIPDGKGRTRLEYVIPS
                     RGLIGFRNEFMTMTSGTGLLYSTFSHYDDVKPGEIGQRKNGVLISNATGKALAYALFG
                     LQERGKLMIDHGVDVYEGQIIGIHSRSNDLTVNCLQGKKLTNMRASGKDDAIVLTTPV
                     RFTLEQALEFIDDDELVEVTPQSVRIRKRLLTENDRKRASRTTTSTSTH"
     gene            complement(4766..5443)
                     /locus_tag="PXA71_000341"
     CDS             complement(4766..5443)
                     /locus_tag="PXA71_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDL5104491.1"
                     /translation="MSIAENLSQIHQQIQQISEQYQRDNVRLLAVSKTKPVEAIQAAI
                     EAGQRAFGENYVQEAVEKIEFFANRPELEWHFIGPLQSNKTKLVAAYFDWIQTVDRLK
                     IAERLNEQRPADKAPLNVLIQINISDEASKSGIEPDEMLPLAQAISQLPNLKLRGLMA
                     IPKPESEPEQQKVAFRKMQLLFNRLQTEFDDIDTLSMGMSDDMQAAIECGSTMVRIGT
                     AIFGARR"
     gene            5514..6053
                     /locus_tag="PXA71_000342"
     CDS             5514..6053
                     /locus_tag="PXA71_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HDL5104492.1"
                     /translation="MLDLTKIKLVITDVDGVLTDGGMYYTDQGEVMKRFHVHDGLGVK
                     MLQSCGIKVAVLSGGDTALLRKRLEVLKIDLALLGKMEKRSACFELMQQAGVTPEQTA
                     YIGDDTLDLPAFEVCGIAIATRNALDYIKEKADWVLQKAGGEGAFREVSDQILEAQGF
                     GEIFKTADGFLTVAGKMAQ"
     gene            6191..6481
                     /locus_tag="PXA71_000343"
     CDS             6191..6481
                     /locus_tag="PXA71_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5104493.1"
                     /translation="MKIYTWDETKRKINLAKHGLDFADADEVLSSPYRFDVEVIRNNE
                     FRIQSFAYSFGRLLVLSLAYTEREDYIRVISFRRASKAEREAYYEYLQQYFE"
     gene            6453..6755
                     /locus_tag="PXA71_000344"
     CDS             6453..6755
                     /locus_tag="PXA71_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5104494.1"
                     /translation="MNTYNNTLNNKNLEKKQLLMAIQAIPASQDFIWDGKDDDERPVT
                     PSEFSIAMKKRGRPAGSKKELVSLRLDKSVLEAFRASGKGWQSRINQVLSDFVKQV"
     gene            complement(6773..7066)
                     /locus_tag="PXA71_000345"
     CDS             complement(6773..7066)
                     /locus_tag="PXA71_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3144 domain-containing protein"
                     /protein_id="HDL5104495.1"
                     /translation="MTQLSTSVYQRADGFINVANAHLKNIAPNQVSNAMLFGCARFNA
                     YVAASKAEYKQQLADSREEVIQYFVEQYKEMLTANLDEYIQNFERYIEGKKAD"
     gene            complement(7232..8191)
                     /gene="rpoH"
                     /locus_tag="PXA71_000346"
     CDS             complement(7232..8191)
                     /gene="rpoH"
                     /locus_tag="PXA71_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HDL5104496.1"
                     /translation="MKKFNENEIEDAEIIDAEPIDVDEIDEEETSVEAMHPALVSGSM
                     PVPQGNLDSYIRMANQYPILTAEQEKELAERYYYDEDVEAAKQLILSHMRFVIHIARG
                     YLGYGLPLADLIQEGNIGLMKAVKRFDPNVGVRLVSFAVHWVKAEIHEYVLKNWRIVK
                     VATTKAQRKLFFNLRKNKNRLAWFNEEEIKKVADDLGVSVEEVREMESRMTGQDLGFD
                     LPAGDDDEDSYAPSMYIEDSSSNFADDLEDEQHNGQATAQLAYALATLDERSQDIIKT
                     RWLDDNKATLQDLADKYNISAERVRQLENAALKKIKEAISLDG"
     gene            8357..8723
                     /gene="ssrA"
                     /locus_tag="PXA71_000347"
     tmRNA           8357..8723
                     /gene="ssrA"
                     /locus_tag="PXA71_000347"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            8998..10224
                     /locus_tag="PXA71_000348"
     CDS             8998..10224
                     /locus_tag="PXA71_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5104497.1"
                     /translation="MARKITPLNDTQIRKAKPEDSPLRDGNGLLLVITSNSKLWRFRY
                     ERPFTKKRNDLSIGAYPDISLAQAREIREEYRALLAQNIDPQTHRQQQEQAKANEISN
                     TYENVAWAWLEHRKTKKNFSDNYQKDVIALIKNNLLPHFGRMPITQITAPMAIKAFKQ
                     YQDEGKLEKLKRAIQKHNEIMMFAVHREMIPFNPTANIAKEFDSPTVEHFKTIKPEDL
                     GEFLYTLQNAQIHLQTRYLILWQLLTMTRPNEAAKAKWADIDEKAKLWTIPAENMKRG
                     IEHKITLSRQAIALLREIKKLSGGKTYLFPSVKNPQTHVNTQTANGAIKRMGYKGKLV
                     AHGLRAIASTYLNEKGYNSDLIEVALSHLNSDRIKAAYDRGERLEQRFKLLQVWADFV
                     EECSQGSLPQYHLKIA"
     gene            10499..10717
                     /locus_tag="PXA71_000349"
     CDS             10499..10717
                     /locus_tag="PXA71_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module killer protein"
                     /protein_id="HDL5104498.1"
                     /translation="MMREQTTNQIIITDNFSKWLENLKNPIAKATVARRIKNAINGNF
                     GDHKSLAGTGGLYEMRIATGAGYRIYYA"
     gene            10830..11153
                     /locus_tag="PXA71_000350"
     CDS             10830..11153
                     /locus_tag="PXA71_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5104499.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNDVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
     gene            11548..12234
                     /locus_tag="PXA71_000351"
     CDS             11548..12234
                     /locus_tag="PXA71_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104500.1"
                     /translation="MADHSQFISRLENRIEPKISFQELIQELSNYTNKPFSHIADKLK
                     SLIFSFQQNGIYTNAFVNCTLFEDGESYAIEPKTLHFKDAFDQPKGVLSDVIAQNSID
                     VEHLNAYYVTAREITQLIKTQSPTLLDKLTTKQTQSEISQIQNDYISVYDFIEWASKH
                     YSSLSETANDLNRLLKDKNIQLYRQYGGISPSIDKDNTNLKAAFDFVAINNGYEKQSS
                     SFNFDDDIPF"
     gene            12395..12547
                     /locus_tag="PXA71_000352"
     CDS             12395..12547
                     /locus_tag="PXA71_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104501.1"
                     /translation="MPELLIVLGNRIAKLEQQHNAMPSETDSITLGILRKQLSQLLKV
                     AERIKE"
     gene            12554..12979
                     /locus_tag="PXA71_000353"
     CDS             12554..12979
                     /locus_tag="PXA71_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104502.1"
                     /translation="MKHELNLAGITALMNEPIKATLSFLDFPHIRIERLHHDNGRPFF
                     IGVLSLDLEDHINIEMAGATGFLEALAIIAYHQQLTATPLLVNDDLLSEINKLPHPQR
                     TNPFIDRHGNEITREQMSKEYREKIDYAFAEKRMAEGKE"
     gene            12976..13668
                     /locus_tag="PXA71_000354"
     CDS             12976..13668
                     /locus_tag="PXA71_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL5104503.1"
                     /translation="MTELTPKQEAFCFAYIETGNASEAYRQAYETEDMKSETVHRKAK
                     ELMDNGKITARIEELKAEHAERHKLTVDDLLKELEEARILAREKENPNAMTQATMGKA
                     KLLGLDKQVTDPCFDGETGKGDMILSVNCSSIKDGKALDETCILKAGTHEFITRDSFI
                     FYRHIRIDSLDEIKANIEAGYFIQKALINDEAYQQILKGVLSSKSVTPRYKRFLKNAI
                     RQSACPDILAEP"
     gene            complement(14208..14819)
                     /locus_tag="PXA71_000355"
     CDS             complement(14208..14819)
                     /locus_tag="PXA71_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5104504.1"
                     /translation="MQLTFNDFQNYYNGKGDLTMFSFYGKKTWENGIYVGIDGSIGRA
                     NNKLSHQSQTIKLARNVYSLGLTVGKTLEVASFNLQPSFGMRYHHLTSANAQLENTKF
                     ETDRVDLLAIQAGLALNKTFIFNELKVKPELGSYFVDASHGTLKTKLNEFSLNQNIGR
                     YFKQEVGITLHYKGVSSSVHAGFTKGNTLQEQKFISLKVGYEW"
     gene            complement(14868..15683)
                     /gene="cysE"
                     /locus_tag="PXA71_000356"
     CDS             complement(14868..15683)
                     /gene="cysE"
                     /locus_tag="PXA71_000356"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDL5104505.1"
                     /translation="MQQSEINQIWQAIRDEAKELANCEPMLASFFHATILKHHNLGDA
                     LSYILANKLENPIMPAIALKEIIEEAYRAEPQIIASAACDINAVRTRDPAVDKWSTPL
                     LYLKGFHALQSYRVTHYLWNQGRKALAVYLQNEISVAFDVDIHPAAKVGCGIMFDHAT
                     GIVVGETSVIENDVSILQGVTLGGTGKENGDRHPKIREGVMIGAGAKILGNIEIGRYS
                     KIGANSVVLQPVPDHATAAGVPARIIGKSSEQKPAFDMNQYFEDEQGLFGDGI"
     gene            complement(15699..16709)
                     /gene="gpsA"
                     /locus_tag="PXA71_000357"
     CDS             complement(15699..16709)
                     /gene="gpsA"
                     /locus_tag="PXA71_000357"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDL5104506.1"
                     /translation="MSEIYSAPITVLGAGSYGTALAIALSRNGHKTYLWGHNPDKMAV
                     LASERMNQDFLPDIVFPEALEIVADLATAVQKSKDLLIVVPSHVFSEVLAQIKPFLSQ
                     DHRIMWATKGLERDTGRLLQTVAKEILGEIYPLAVLSGPTFAKELAAGLPTAISLAST
                     DPVFADQMQKRSHCSKAFRVYLNNDIIGVQLGGAIKNVIAIGAGISDGMGFGANARTA
                     LITRGLAEISRLGVSLGADPKTFTGMAGLGDLVLTCTDNQSRNRRFGLALGQGKSAEV
                     AIAEIGQVVEGFYNTKEAYLLAQTQGVEMPIVEQIYQMLFCGKQASDVVKTLLGRERK
                     GE"
     gene            complement(16816..17316)
                     /gene="secB"
                     /locus_tag="PXA71_000358"
     CDS             complement(16816..17316)
                     /gene="secB"
                     /locus_tag="PXA71_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HDL5104507.1"
                     /translation="MSEENQVASTEEATQTPFELQIQRIYVKDVSFEAPNLPTIFQQE
                     WKPQLGFELDTETKEIGEDLYEVTLHITVQTTLEDSNDVAFICEVKQAGVFTIKGLEG
                     IQLAHCLASQCPNVLYPYARELISSLVNRGTFPALNLSPVNFDALFMDYLQRQEESAE
                     EPALAN"
     gene            complement(17337..17789)
                     /locus_tag="PXA71_000359"
     CDS             complement(17337..17789)
                     /locus_tag="PXA71_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL5104508.1"
                     /translation="MEQLTFAQQLEQFFANHTLMVFAWVALLIAVIFSFYKSATQKYK
                     IVDNAQATQLINKEEAVVVDLRSDEEFRAGHIIDSIHVLPSDIKAAKINQIDKYKARP
                     VIVVDTNDFTSGGVAADLAKQGFSRVYVLKEGIGGWRAASLPTIKKHK"
     gene            complement(17905..19203)
                     /gene="tig"
                     /locus_tag="PXA71_000360"
     CDS             complement(17905..19203)
                     /gene="tig"
                     /locus_tag="PXA71_000360"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDL5104509.1"
                     /translation="MSFSIETLEGLKRRVTINVPADKIEAAYKEQLKGYAKNARVDGF
                     RKGKVPHSIIEQRFGIAARQDVLSDEMQRAFFEAVIAEKINLAGRPTFTPNNYQPGQD
                     FSFTAEFEVFPEVELKGLENIEVEKPVVEIADADLDKMVDVLRKQQATWSESQEAAKA
                     ESRVTIDFVGSVDGEEFEGGKASDFVLFMGQGRMIPGFEDGIVGRKAGEQFDIDVTFP
                     EEYHAENLKGKAAKFAITLKKVEEMVLPELTEEFVKKFGNAKSVEELRAEIKKNMQRE
                     LKNAVTSRVKTQVINGLIAQNDVEVPAAAVEEEINVLRQQAVQRFGGKPEMAAQLPAE
                     LFEAEAKRRVQVGLLLSSIIGSNELKVDEKRVEEMIADIASAYEQPAEVVAHYAKNRQ
                     LTENIRNVVLEEQAVDAVLAKAKVTEKTMSFDEVMSQQAQ"
     gene            complement(19500..20684)
                     /gene="tuf"
                     /locus_tag="PXA71_000361"
     CDS             complement(19500..20684)
                     /gene="tuf"
                     /locus_tag="PXA71_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDL5104510.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKHFGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTATRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ
                     YDFPGDDTPIVRGSALQALNGVAEWEEKILELANHLDTYIPEPERAIDKPFLLPIEDV
                     FSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENVG
                     ALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFR
                     TTDVTGTIELPEGVEMVMPGDNIKMTVSLIHPIAMDEGLRFAIREGGRTVGAGVVAKI
                     IK"
     gene            complement(20744..22846)
                     /gene="fusA"
                     /locus_tag="PXA71_000362"
     CDS             complement(20744..22846)
                     /gene="fusA"
                     /locus_tag="PXA71_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDL5104511.1"
                     /translation="MARTTPISLYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMSQQYPQHRINVIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRTGANFLRVVEQIKT
                     RLGGNSVALQLPIGAEDSFKGVVDLIKMKAINWNEADQGMTFTYEDIPADMLEACEEH
                     RAMLVEAAAEASEELMEKFFSGEELTEDEIKAALRQRVLAGEVIPVCCGSAFKNKGVQ
                     AMLDAVIDYLPAPTDIPAIKGINEDETEGERHASDDEPFASLAFKIATDPFVGNLTFF
                     RVYSGVINSGDTVYNSVKQKRERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVGTG
                     DTLCAIDAPIILERMEFPEPVISVAVEPKTKADQEKMGLALGRLAQEDPSFRVHTDEE
                     SGETIISGMGELHLDIIVDRMKREFKVEANIGKPQVSYRETIRTRVNDVEGKHAKQSG
                     GRGQYGHVVIDLYPLDAEGPGYEFVNEIKGGVIPGEYIPAVDKGIQEQLKSGPLAGYP
                     VVDLGVRLHFGSYHDVDSSELAFKLAASLAFKAAFAKASPVLLEPIMKVEVETPPDYV
                     GDVIGDLSRRRAMVNGQEANEFVVKINAEVPLSEMFGYATDLRSQTQGRASYSMEPLK
                     YAEAPKNVADAIIEARRK"
     gene            complement(22948..23418)
                     /gene="rpsG"
                     /locus_tag="PXA71_000363"
     CDS             complement(22948..23418)
                     /gene="rpsG"
                     /locus_tag="PXA71_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDL5104512.1"
                     /translation="MPRRRSIEPRKILPDPKFGSELLAKFINVLMVDGKKSTAEKIVY
                     GALETLTQRSGKEALEAFEIALENVRPTVEVKSRRVGGSTYQVPVEVRPTRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAADNKGSAVKKREDVHRMAEANKAFAHFRW"
     gene            complement(23549..23923)
                     /gene="rpsL"
                     /locus_tag="PXA71_000364"
     CDS             complement(23549..23923)
                     /gene="rpsL"
                     /locus_tag="PXA71_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005306278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDL5104513.1"
                     /translation="MATINQLVRKPRVKKVVKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRIRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGAL
                     DCAGVKDRKQGRSKYGVKRPKA"
     gene            complement(24044..25003)
                     /gene="rfaC"
                     /locus_tag="PXA71_000365"
     CDS             complement(24044..25003)
                     /gene="rfaC"
                     /locus_tag="PXA71_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HDL5104514.1"
                     /translation="MKILIVKTSSMGDVLHTLPAITDMQNAIPDLKVDWVVEENFTEI
                     PAWHSAVNKVIPVAIRRWRKNLCQRQTWVEWQQFLKQLKSEQYDAVIDAQGLIKSAVL
                     VTRQAKGKKFGYDKNSAREGLSSLFYDETFNIPYQQHAVERIRKLCAKSLGYALPTER
                     GDYCIAQHFAKNPQKTTAYIMLIHATTRADKHWQEAYWAELIQALDKHNLAVRLPWGN
                     QAEKERAERLASVANNAKVLPKMSLTDIATQLAGAAAVVSVDTGLSHLAAALDKPNVI
                     LYGATDPKLIGAYGQNQFYLKADKMENITSSQVLEKLLPLINK"
     gene            complement(25070..26107)
                     /gene="waaF"
                     /locus_tag="PXA71_000366"
     CDS             complement(25070..26107)
                     /gene="waaF"
                     /locus_tag="PXA71_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HDL5104515.1"
                     /translation="MNILVIGPSWVGDMMMSHALYQQLKIQYPNCQIDVMAPDWCCPL
                     LARMPEVRNAISMPIGHGSFRLCERYRLGKSLRNQYDMAIVLPNSLKSAFIPLFAKIA
                     RRRGWKGESRYFFLNDLRSNKNDYPMMVQRYVALAFEKATVPTAQQLPIAYPYLTTDS
                     EQIEQTKAKFEKQLAYAENRPAIGFCPGAEFGPAKRWPHYHYAILAKMLIEQGYSVRL
                     FGSKKDEAAGEQIRLALPENLQRYCLNLAGQTDLNQAVDLIADCNAVVSNDSGLMHIA
                     AALNKPLVALYGPTSPQYTPPLSQNAEIMRLIEGGLIKIRKGEGAEGYHQSLIDIQPE
                     MVMDKLAELLV"
     gene            complement(26218..26580)
                     /locus_tag="PXA71_000367"
     CDS             complement(26218..26580)
                     /locus_tag="PXA71_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="HDL5104516.1"
                     /translation="MLVACSTVVTPVEQIHQVQKEKESVKKVTKLIAQAPKVSLYRCE
                     NDKKVEVERQGRTKKALKKEIVTVSYQGTTHQLSPSVTRDGKKYTNIRWTWHETRSGK
                     AFLYNNTKKTLAANCIKQ"
     gene            complement(26698..28017)
                     /locus_tag="PXA71_000368"
     CDS             complement(26698..28017)
                     /locus_tag="PXA71_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="opacity-associated protein A"
                     /protein_id="HDL5104517.1"
                     /translation="MTQNNFRKEPVFGESSVTSQDAEATKTDTAQAPYVSLRSTKAPG
                     HTFTPIMKRPDAKVEDHTADVFSAKQAKEFQFTPSSEATEAVEPDNTIHSVEESVSTA
                     SFNAVEAQENVEKEVVKPAPESFTTERIIPNAATAAAAATAAAAATKTKEIKAKMPPK
                     TRRLLLVALLALALLVLFFLLKPSTPETVEELQSQQGGSLPIEFRPVDEAEAKRAEEQ
                     ARAEQEAAEAAKAQEQAQAAQQESVTVAPAQTEQTMAKPSQDSQSQTQSQAVVEQPVA
                     VKPVENKPVVAQPAIKPKTENSVVFQPETTVKQQPKAPAKTEVKTERATLAAKETAKT
                     AAKPVEKAPTKTEAVKAAPAAESANAVATKTMTVPKGVSLMQVFRDNNLNISDVNAMS
                     KVNNVVSNLKVGERVTVRLDKNNRVVEMSIGSGGKFTRQANGSYTFK"
     gene            28310..28648
                     /locus_tag="PXA71_000369"
     CDS             28310..28648
                     /locus_tag="PXA71_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HDL5104518.1"
                     /translation="MKKIKQLGLTFLFGLNAMAFAQTPPTTMPVEQNAVTQPVQQTQI
                     TNANAVNINTASAAELQDKLVGIGQKKAQAIVDYRTKNGNFKNIEQLAEVSGIGQATV
                     EKNRANIILE"
     gene            28813..29706
                     /gene="psd"
                     /locus_tag="PXA71_000370"
     CDS             28813..29706
                     /gene="psd"
                     /locus_tag="PXA71_000370"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251643.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL5104519.1"
                     /translation="MQLKKYPVPTYFQRVKIALHYLLPQLAITRAAGWLAEQKWGVVT
                     HLIIKLFAKQYKVNLSEAKKTEPSDYATFNEFFIRELKENARPINQDPNTLCLPAEGK
                     VSESGEISDNRLLQAKGHHFTLETLLANDEEMAAKFKDGTFITTYLSPTDYHRVHMPC
                     DGTLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFDTAFGPMLQILVGATVTAS
                     MSTVWAGVINPPRADEVVVWNYETEGEKAIKLQKGEEMGAFRLGSTVINLFPKGKVHL
                     NPALIAGMQTRMGEELGRIIN"
     gene            29778..32129
                     /locus_tag="PXA71_000371"
     CDS             29778..32129
                     /locus_tag="PXA71_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5104520.1"
                     /translation="MYTLQELKQMNEQEIRSRLISPAIRNAGWSDRQIGEEYTFKTNK
                     RFTDGQVVVDPKTTQTKRIEAKRVDYLLYTSANQKIAVVEAKDNHHSSRHGLQQAMTY
                     ARLLDVPFAYSSNGDEFVEHDFITGVQRTLPMSAFPTPDELHQRWAKQYTTEELKIIQ
                     QPYYTSSTDTFKEPRYYQEIAINRTVEAVAKGQQRILLVMATGTGKTYTAFQIIHRLK
                     TSGAKKKILFLADRNVLVDQPMMQDFKPFKDKMVKVSNKKLDSAYEVYLALYQQLDGE
                     TDNELFKQFQPSFFDLIVIDECHRGSAKEDSDWRAILKYFKDATHIGMTATPKETDDA
                     SNITYFGEPIYTYSLKQGIEDGFLAPYRVIRVDLDCDLKGWRPTKGLKDHQGNEIEDR
                     LYTVKDFDYNIVLNDRTRLVAERICEFLRKTDRLQKTIVFCANINHAERMVAELSRLN
                     ADMLKHNSKYVCQITGDQSGKGVDLEEFCDVANEGKDYPVIAVTSKLMTTGVDSKTCK
                     LVVLDANIQSMTEFKQIIGRGTRLRPDFGKEFFTILDFRGVTRLFADPAFDGEPVVIL
                     DVPENKPLVEQPLPKPSDKDIIKDPELKPYKIPVVVDFGTLKLRILDEKVQYLNEQGE
                     LVSEDIDLFSKREMQKEFGSYEQFQQQWTTSGEIFSKFYTDPKWLAALRQTRQFSHDV
                     EDFDVLSHISFGKKPLTKTERAEKVKQSGYVEQYSPENQQVLGLLLNEYVKSGNQDLT
                     KTEILKTPQFSRFGGLVSIIKNFGGKELYQKAVKGLEKMIYSE"
     gene            32177..33646
                     /locus_tag="PXA71_000372"
     CDS             32177..33646
                     /locus_tag="PXA71_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HDL5104521.1"
                     /translation="MSLNNIVKRLQDVMRNDAGINGDAQRIEQIVWILFLKIYDAKEQ
                     EWELENDEYHSILPNFLRWQNWAEDKKDGKAMTGDELLSFVNNELFPTLKNLPISADT
                     PMNQRIIRAAFEDNNNYMKNGVLLRQVINIIDEIDFAHYQERHAFGDIYENILKSLQS
                     AGNAGEFYTPRAVTDFMVQAIKPKLGERIADFACGTGGFLTSALKVLESQIQTLSDRT
                     LFNNSVYGIEKKALPHLLCITNLLLHDIDNPNVHHDNALEKSVKDYTENDKFDVILMN
                     PPYGGSEIEQIKKNFPTALQSSETADLFMSVIMYRLKQNGRAAVVLPDGFLFGTDNAK
                     VAIKKKLLEEFNLHTIIRLPHSVFAPYTSITTNILFFDKTEPTRETWVYRLDMPQGYK
                     NFSKTKPMKLEHFNEVVEWWGNRQVIEVEGFDKAKSFTLKEMSDRQYNLDLCGFPHEE
                     EEILPPDELIADYQRKRTAYNADIDKILAEITDILGIKL"
     gene            33659..35320
                     /locus_tag="PXA71_000373"
     CDS             33659..35320
                     /locus_tag="PXA71_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL5104522.1"
                     /translation="MLTWEHIEKMIAHQQFIREKAEIEYKEAKNSVPKDLWHTYSAFA
                     NSNGGFILLGIKENEQGHFPELLISGVNDPDKVIDELFSQSRSEKVSKSLLKDNDVKI
                     FQVENKSVIAIYVKAADILDRPIHLNGDYRLSYVRLNSGDHKLTSSELRSFISSYSQK
                     DADGRIVPYASIDDISLSTLDKYRNLLKAHNSTSKLLTLSDEKLLQEIGAYKKDLAQN
                     SEGITNAGLLMFGKHYAITSIFPHFFFEYYEEAGDVKRYTLRITDFDLEEGNLFEFYL
                     KIVPLIQELGKDKHFKLDNLTRTEENEITDGLREALINAITHADYFNNVRHLKVIKTK
                     DNKLIFENAGVMLVDIPTAIAGQRSECRNSIIHNLFHRLGLCERQGQGVRDIYSYWQS
                     RNFNSPLLESEIDYTKLTLTFQSGMIADFEEKFTACFGENFSELQPIQKDCLLFIAFN
                     QGKAMFAELAQKLPQYPRRNITLALARLKEKGLLTSSGSPRKQLYTLVNLEWIITEKS
                     QDDYFNPPFDQLDKASESKGAPPKKSKVKQVKQLPQNKANKLPPK"
     gene            35526..37046
                     /locus_tag="PXA71_000374"
     CDS             35526..37046
                     /locus_tag="PXA71_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5104523.1"
                     /translation="MKAQQLKNAILQLAIQGKLVPQDPNDEPASELLCKIQAEKDRLI
                     AEGKIKKNKKTADKAPYTIEPPFEIPESWVWVRLGDICLKITDGTHHSPPNIDKSDFL
                     YITAKNIKKDGLDLSKISYVTKEIHNEIFSRCNPEKGDILYIKDGATTGVSIINTLNE
                     PFSMLSSVALIKTSQEIDNEYLNYVMNSHYFYNISIGSMSGTGIPRITLTKLESYLVP
                     VPPLLEQQRIVQKIEELLPLVERYEQTEQQLTKLNNTFPEQLKKSVLHAAIQGKLTEQ
                     DPNDELASCLIERIKAEKNRLIAEKKLKKPKSVSEIVMRDNLPYEIKAGQERCIADEV
                     PFEIPQNWTWVRLGEVGDWSSGATPNRHNPEYYNGTIPWLKTGDLNNGIISSIPEFIT
                     DKALQECSVRLNPVGSVLIAMYGATIGKLGILKIAATTNQACCACIPFNGIYNKFLFY
                     YLMSQKAEFQKKSEGSGQPNISKEKIINYLFPLPPIHEQHRIVQKIEQLFAEIEKL"
BASE COUNT        11188 a         7903 c         7223 g        10964 t
ORIGIN      
        1 tttcctgtta tgcttttaat aaaataaagt gttcaatcag tttaatcatc agttcttttt
       61 gttcaggcaa actttctgcc accaacaagg ctaagacaac cagtgtattg actgagcaaa
      121 ccaatcacct gctcaaactc gatacctcgt tcctgcaaac ggcgttcgtt aagggcatag
      181 cctttcacca gatagtcttt taggcgaacg acttctctag caccttcaat ttgaactgtt
      241 gcattttttg caacagttgc ctcacgctcc agttcacctt cttggtagat atttcgtaag
      301 tgccgagaaa taacagactt atctcgtcca aaaatatctg ccatttgctg taaacttagc
      361 cacaccgttt ccttatcaaa ctgcacggaa acttgggttt tgccgtcttg gctttggtaa
      421 atttcaatcg ggtttttcat attattccca aattttatct ataaaaaaat ctctcgaaag
      481 ttgccttccg agagatcttt attgatttgc tacacttgct cggaagagtt atcttccgca
      541 cacaccaaat gcccgaaaga tatcaggtta aagtgtggtg gtgatgtaaa gtgtagttta
      601 aattcattgc attactccaa aacagtatga acagaattta cgtcaagccg gcagaaatat
      661 caagcacttt tttaagcaaa taccggcttt tttataaccg tttgttctgc ctattatgtt
      721 cttgcggaat acaccttaaa cttggtggat tttgccagta cgtcgtgttt gccgaaggct
      781 ttatcgagca aatctgggta aggcaagaat gcgtttgcga caattcgcag ctcaccgcct
      841 ttggttaggt gatttttagc ttggaaaatc aactcctcca ccgctcggta ggcggtatcg
      901 accccgtcgt ggaatggtgg gttggagaca attaaatcaa accgttcatt aatgtgagag
      961 aacacatcac ttgctaccac ttccccctct aactgatttt ccgccaaagt acgtctgccg
     1021 gattccaacg ccattgcgtg aatatcgctc atcgtcagtt tgattttcgg aaattgttgt
     1081 ttgagcgttg ccccaatcac gccagcccca cagcctaaat ctaacacttt gccttttagc
     1141 ctgtctgctt tgtcgaaggt tgaaagcaat aatttggtgc cgttatccag ctccgccgag
     1201 ctaaaaaccg ctggtagatc gaacacatct aagtcttgca agcggtagga tttccagaat
     1261 tttttgcaat cgaatgtcgg cacggtctgt agctcaaaat ggtataaacc acaacggcgt
     1321 gcagagtcga ttttggcaat attgccgaac ggttcgagca gtttttctac cgaacgaaca
     1381 ccagctcggt tttcgccgat aatcaacatt tcttgccctg cttggcattg cgacagccat
     1441 tgtagcagtt ggaattggca ttcctgcttg ttcttcgtcc aataaaacac cgctaactcg
     1501 gcactcaaac cacattctaa gccaaattca acctcactat ggtggcgtgc gtaatcaaaa
     1561 tagctactga ataccgcaac cttttccgca cgagattgca gctggcgggc aaaatcatct
     1621 cgcacatcgc caaataataa caccgacttg ttttcaaata acgccaaatg gcgttcaagt
     1681 acttcgcttt ctaaagagag cattttctta ccttatctaa aaaatttagc gtgaatatac
     1741 cgaatttaag tacagaaatc ttgaattttt tgaaaaaagt ttctgttcaa gcggagtttt
     1801 gatactattt gcaaaatttg atgaggtttt aaatgaatcg tcgtgattta ctgttacagg
     1861 aaatgggtat ttcgcaatgg gtgctaacca atccccaagt gctaaaaggc gatgctcaaa
     1921 tccgcctaaa caatgcggta aaattggtgg tagtgtgtga ggaagatcac caacacagcc
     1981 ggctctttgc cgatattctg cgtgctttaa agttaaaaaa cagcgaatat caatggctga
     2041 ctggcgaaca atcacaacgt ttggtgtttg agcattcgcc gatcttttgg ctgattcaag
     2101 cggaagaaca agcggtcaaa atggcaaaaa gttttactaa tcagaccgct tggaaaaacg
     2161 agtcttggca agatttagcc aaatctacga ccaaacgcca actttggcaa caaattgata
     2221 ctttttcggc acaatttgga gaacagcgtg attgagcaaa ttcaagcgga agatttcgag
     2281 cagttatttg aaattgagca acaagcccat ttagtgccgt ggtcaaaggg gacgttatta
     2341 aataatcagg gtgaaaaata cctgaattta aaagtggtag agcaaaacaa aattgtggct
     2401 tttgccatta gtcatatcgt gctagatgaa gcaaccttat ttaacattgc agttgctcct
     2461 gattttcaag gcaaaggcat tggcaagcgg ttactttccg aattaatttt gcaactgcaa
     2521 caacggaaac tcaccaccct gtggttggaa gtgcgagaat ccaaccattc tgccagaaaa
     2581 ctctacgatt cactcggttt taatgaagtt accacccgca aaaactatta ccccacgcca
     2641 aacggtagca aagaaaatgc ggtggtaatg gcgttatatt tgtagggaga atttaaaacc
     2701 aaaagagcga cctcagtcgc tcttttttat cagttagtgc gtgctggtac tggttgtagt
     2761 acggcttgca cgtttccggt cgttttcagt taataaacgt ttacgaatac gcaccgattg
     2821 tggtgttact tccactaatt cgtcatcgtc aataaactct aacgcttgtt ctagagtgaa
     2881 acgcaccggt gtggttaaaa cgatggcatc gtctttacct gatgcacgca tattggttaa
     2941 tttcttaccc tgtaagcagt ttacggttaa atcgtttgaa cggctgtgaa tcccgataat
     3001 ttgcccttca tatacatcaa caccgtggtc gatcattaat tttccacgct cttgtaagcc
     3061 aaataatgcg tatgctaatg ccttacccgt tgcgttagaa attaacacac cgtttttacg
     3121 ctgaccgatt tcgcccggtt ttacgtcatc atagtggctg aatgtagagt aaagtaaacc
     3181 agtacctgag gtcatcgtca taaattcgtt acggaaaccg attaagccac ggcttgggat
     3241 cacatactct aaacgggtac gacctttgcc gtccggaatc atatcacgca cttcaccttt
     3301 acggatacca agtgcttcca tcactgaacc ttggtgttgc tcttcgatat caatcgtcac
     3361 ttgctcaaac ggctcttgtt ttttgccgtc ttcttcgcgg tagattactt tcgggcgaga
     3421 cactgctaac tcgtaacctt cacgacgcat attttcgatt aataccgata agtgtaattc
     3481 gccacgacct gacacacgga attcgtctgg gttcgaagtt tcttccacac gcaatgccac
     3541 gttgtggact aattctttgt ttaaacgctc aagaatttgg cgtgaagtca caaatttacc
     3601 ttcttgaccg cagaatggcg aggtgtttac gcagaagaac atcgttaccg ttggttcatc
     3661 aacgcttaat gctggtaaag cctctactgc gttaatatca caaatagtat ctgaaatatt
     3721 taattcgcct aaaccagtaa tcgcaacaat atcgccagca aaggcttctg ttgcttcaaa
     3781 acgttgtaaa cctaaatgcc ccaacacctg accgatacga ccttggcgag ttttgccttc
     3841 gctatctaca atcgttaccg cttggttagg tttcaccgaa ccacgtttga tacgtccaat
     3901 accgataacg cccacatagt tgttgtagtc taattgcgaa atctgcattt ggaatggtgc
     3961 atctaattcc acttgtggtg gttgaacgtg tttgacaatc gcttcataaa gtggggtcat
     4021 atctgccgct aggtcttcgt gttctaagcc tgctacacca tttaaggctg aagcgtagat
     4081 aattgggaaa tctaactgct catcacttgc acctaaattt acaaacaagt cgaacacttg
     4141 atccaccacc caatcagggc gagcacctgg gcggtcaact ttattgatca ctacgattgg
     4201 ttttaaaccg tgagcgaacg ctttttgcgt gacgaaacgg gtttgcggca tcgggccatc
     4261 aaaggcatca accactaaca gaacagaatc taccattgaa agtacacgct caacctcacc
     4321 accgaagtca gcgtgccctg gggtatctac gatattgatg tgataaccat tccagttaat
     4381 tgccgtattt tttgcaagaa tggtaatgcc acgctctttt tcaagatcgt tggaatccat
     4441 tacacgctca tcaacgtcac cacgagtttc accaaaggtg cctgattgtt gtaaaagttt
     4501 atcaaccaag gtggttttac cgtggtcaac gtgggcaata attgcaatgt tacgcaattt
     4561 tgaaatatct acattttgca ttggaatatc tttaagttaa gtcaaaataa aaactctcgc
     4621 ccatcaaaac tggcgagagt caagaaatta ggaggcgtaa ttatacagac tttttccgct
     4681 gttggctaca aaacaagcgg tggaatttgc aaagtttttg gcgaatttga ccgcttgtat
     4741 cagctttatg taaaaactca gctggctaac gtctcgcccc aaaaatcgca gtcccaatcc
     4801 gcaccattgt cgagccacat tcaatcgccg cttgcatatc gtccgacatc cccattgaaa
     4861 gggtatcaat gtcgtcaaat tctgtttgca agcggttaaa aagtagctgc attttgcgaa
     4921 aggcaacttt ttgttgctct ggctcgcttt ctggtttggg aatggccatt aagccccgca
     4981 gtttcaaatt cggtaattga gaaatcgctt gggcaagtgg tagcatttca tctggttcaa
     5041 tgcccgattt cgaggcttca tcgctgatat taatttgaat cagcacgttg agcggggctt
     5101 tatccgctgg gcgttgttcg tttaaacgct cggcaatttt taatctatcc accgtttgaa
     5161 tccaatcaaa ataggcagcg accaatttgg ttttatttga ttgaagtggc ccaataaaat
     5221 gccattctaa ttcggggcga tttgcaaaaa attcgatttt ttcgaccgct tcctgcacat
     5281 aattttcgcc aaatgcacgc tgccctgcct caatcgccgc ttgaatcgcc tcaactggtt
     5341 tagttttgga gacggctaac aaacgcacgt tatctcgttg atattgttcg gaaatttgct
     5401 gaatttgttg atggatttgc gataaattct cggcaatcga catttcggtt cctttggtaa
     5461 acggaggtaa aaaagctata atggtaaaat cataccatat ttgaggcaaa aaaatgttag
     5521 atctcaccaa gattaaatta gtgattaccg atgtggacgg cgtgctaacc gatggcggaa
     5581 tgtactacac cgaccaaggc gaagtaatga aacgtttcca cgttcacgat ggtttaggcg
     5641 ttaagatgtt acaaagttgt ggcattaaag tggcagtact ctcgggcggc gatacggctt
     5701 tgctccgcaa acggttagag gtgctgaaaa ttgatctcgc tttgttaggc aaaatggaaa
     5761 aacgctccgc ctgctttgag ctaatgcagc aagccggtgt tacccctgag caaacggctt
     5821 acattggtga tgacacctta gatttaccgg cttttgaagt gtgtggcatt gcgattgcaa
     5881 cccgtaacgc cctcgattac atcaaagaaa aagcagattg ggtattgcaa aaagccggtg
     5941 gtgaaggggc gtttcgtgaa gtctccgacc aaattttgga ggctcaagga ttcggtgaaa
     6001 tttttaaaac cgcagatggt tttttaacgg tagcggggaa aatggctcag tagactcttc
     6061 aagcagttaa atttcatttt atttttgcga tctgcatcga aaaaatgtat ttctaatctg
     6121 attttcaaat tactgtttgc taaattaaat ttagttcttg ttagatttat tttatgtata
     6181 tacaataatt atgaaaattt atacttggga cgaaactaaa cgcaaaatca atttagccaa
     6241 gcacggatta gattttgccg atgcagatga agttctctca tcgccctatc gatttgatgt
     6301 tgaagttatt cgtaacaatg aatttagaat acaatctttt gcatattcat ttggacgttt
     6361 actcgtatta tcacttgcat atacagaaag ggaagattac atcagagtaa ttagctttcg
     6421 gcgagcatct aaagcagaaa gagaggcata ttatgaatac ttacaacaat actttgaata
     6481 ataaaaattt agagaaaaaa cagctactta tggctattca agctattccg gcaagccaag
     6541 attttatttg ggacggaaaa gatgacgatg aacgcccggt tacgccatca gagttttcaa
     6601 ttgcaatgaa aaaacgtggc agaccagctg gttcaaagaa agaattggtt tcgttacgtc
     6661 ttgataaaag cgttcttgaa gcctttagag cttcaggtaa aggttggcaa agtagaatta
     6721 atcaagtttt aagtgatttt gtaaaacaag tttgaccaca aaacaaaggc ggttaatccg
     6781 cctttttccc ttcaatatat cgctcgaagt tttggatata ttcatctaaa tttgcagtga
     6841 gcatttcttt gtattgctcc acaaaatatt gaataacttc ttctctggaa tcggccaact
     6901 gctgtttata ttccgccttg cttgccgcaa cataggcgtt aaatctggca caaccaaaca
     6961 acatcgcatt gctgacttgg tttggggcaa tgttttttaa atgagcgttg gcaacgttaa
     7021 taaagccgtc tgctcgctgg tagacgctgg tagaaagttg ggtcaatttg tttatcggta
     7081 atgttaatca tagtatcctc atttttagtc aaaatacaag cggtgctttt tgcgtaaaat
     7141 tttgcacaaa cgcttgcgtt tgaacgttgg ctctgccgac ggcacgaagt gcgagcgtag
     7201 cgagtaaaaa aatcaccgct tgtaggcatt tctagccgtc taatgaaatc gcttccttga
     7261 ttttcttcaa tgcggcattt tcaagctgtc ttacccgctc tgccgagatg ttatatttat
     7321 cggctaaatc ttgcagtgtg gctttattgt catctaacca gcgggttttg atgatgtctt
     7381 ggctacgttc atcaagggtg gctaacgcat aggcaagttg agcggttgcc tgcccattat
     7441 gttgttcgtc ttccaagtca tcggcgaaat tggagctgct atcttcaata tacatagaag
     7501 gagcgtagct gtcttcatcg tcatcaccgg caggcaggtc aaaacctaaa tcttgtccgg
     7561 tcattcgaga ttccatttct cgtacttctt ccactgaaac ccctaaatca tcggcaactt
     7621 ttttgatctc ttcttcatta aaccacgcca agcggttttt atttttgcgt aaattaaaga
     7681 ataatttacg ttgagctttg gtggttgcca ctttcacaat tcgccagttt ttcagcacat
     7741 attcgtgaat ttccgctttc acccaatgaa ccgcaaaaga aaccaaccgc acgccgacat
     7801 tcgggtcaaa ccgttttacc gctttcatca agccgatatt accctcttgg atcagatctg
     7861 ccagcggtaa accatagccc aaatagccac gagcaatatg gatcacaaac cgcatatggg
     7921 aaaggatcag ctgttttgcc gcctcaacgt cttcatcata ataataacgc tccgccagtt
     7981 ctttttcttg ctcggcggtg agaatcggat actgatttgc cattcggatg tagctatcca
     8041 aattgccctg cggcacaggc attgagccgg aaaccaaagc cggatgcatt gcttctaccg
     8101 atgtttcttc ttcgtctatc tcatcaacat caatcggctc ggcatctata atttcagcat
     8161 cttcaatctc gttctcgtta aattttttca ttctatttct cttcactctc agcaaggttt
     8221 acattataac agagttaaat ctatctggtg tgggatttgt atgattttat ttcgagctat
     8281 tcaataccgc taagttccgc cacttgcaaa actttttgca aattcgaccg ctttccttta
     8341 gaataccgct acttttgggg ctgattttgg attcgacggg attggcgaag cccaaggtgc
     8401 atgtcgaggt gcggtaggcc tcgtaaacaa accgcaaaat aatagtcgca aacgacgaac
     8461 aatacgcttt agcagcttaa taacctgctt taaagcctta tctcctcagc ttccgctcgt
     8521 aagacgaggg caaagataag tcacccaaaa cgagatcgtg tggacgccgc cgctttagga
     8581 tcgaaacact aaattaaata aagctagttt attcattgcg tgtctgtccg ctgtgaataa
     8641 gcgaaattaa agactagact aaacatgtag tactgaaggt agagaaattt cggacggggg
     8701 ttcaaatccc cccagctcca ccaaattata atcctatacg gttcaaccga tacctaaaaa
     8761 gccttgaaaa tcaatgtttc aaggcttttt tattgtccgt tgcgtaccta tacgatacaa
     8821 tcaaatccga agattttagg agtatattta ggagtacgcc ggaatacccc caaaaattcg
     8881 tactcctaaa accactttag agccttttca aataaggctt tatcgctttt agttttgtac
     8941 tcccaaacaa aaaatcatac tcctaagatt taggctttat actcctaaag gtttactatg
     9001 gctagaaaaa tcacaccgtt aaacgatacc caaataagaa aagcgaaacc ggaagacagc
     9061 ccattaagag acggtaacgg cttactactt gttattacct caaattctaa attgtggcgg
     9121 tttaggtatg aaagaccgtt cacaaaaaag cggaatgatt taagcattgg ggcttaccct
     9181 gatatttctt tagcacaagc gagagaaatt agagaagaat atagggcatt attggctcaa
     9241 aatatcgacc ctcaaaccca ccgccaacaa caggaacagg caaaggccaa cgaaatcagc
     9301 aacacttatg aaaatgtagc gtgggcgtgg ctggaacacc gcaagaccaa gaagaatttt
     9361 tcagacaact accaaaaaga tgtaatcgcc ttaattaaaa ataacctctt gccgcacttt
     9421 ggaagaatgc ctatcacaca aataaccgca ccaatggcaa tcaaggcatt caagcaatac
     9481 caagacgagg gcaaactaga gaagttaaaa cgggcaattc aaaaacataa tgaaattatg
     9541 atgtttgccg tacaccgtga aatgataccg tttaacccta ccgccaatat tgcgaaagag
     9601 tttgatagcc caacggttga acatttcaaa accattaagc cggaagattt aggcgagttt
     9661 ttatacacct tacaaaacgc ccaaattcat ttacagacac gctatttaat tctgtggcag
     9721 ttactcacaa tgacccgccc gaatgaagcg gctaaggcaa aatgggcgga tatagacgaa
     9781 aaagccaaac tgtggacgat accggcggaa aatatgaagc gaggcattga gcataaaatc
     9841 acactctcac gccaagcaat cgcacttttg cgagagatta aaaagctaag tggcggtaaa
     9901 acgtatttat tccctagcgt gaagaaccca caaacgcacg tcaatactca aaccgccaac
     9961 ggtgcgatca aacgaatggg ctacaagggc aaattagtgg ctcacggctt gcgggccatc
    10021 gcctccactt atcttaatga gaaaggctac aatagcgatt taatcgaggt tgccttatcg
    10081 catttaaaca gcgaccgaat caaagccgcc tatgatagag gcgaacgcct agagcaacgt
    10141 tttaaactgc tccaagtgtg ggcggatttt gtagaggaat gttcgcaagg tagcttaccg
    10201 caatatcatt tgaaaatagc ctagtaaatt ttccgccaaa aatgaccgct tgtaatgccg
    10261 ttaggtaaac cgcctgacgg cttttttatg cccgtaattc cccttgatga aaattctgta
    10321 aacttttcga tttttaccca ctttacccac ttttcactat tattttttta taactaactg
    10381 aaaaataaag aaaaaatgac agtgggtaaa gtgggttaaa agtgggtaaa tggcaaaaac
    10441 ccttgctcac tgtatcttaa tggatacaat aagcaataaa tagaataaga agccggcaat
    10501 gatgagagag caaaccacta atcaaattat tattaccgat aatttttcaa aatggcttga
    10561 gaatttaaag aaccctatcg caaaagcaac ggtagcaaga cggataaaaa atgcgattaa
    10621 tggcaacttt ggcgatcata aatctttagc cggtacaggc ggactttatg aaatgcggat
    10681 agcaacagga gccggatata gaatttatta cgcataacaa ggaaatgtaa tttatatctt
    10741 gttacacggc ggcgataaat caacacagca agccgatata gagaaagcga aagcattatg
    10801 ggctgaatta aaaactacag gagaaagcaa tggaaacaat acaaatcaat gaacaggcag
    10861 cagaaaagca cggtttacgc ccttttgacg tggcggagtt tttaaccgat gaggcaacta
    10921 ttcaagccta tttagcggaa gtgttaaaag agggcgacca agacgaattt ttagaagcct
    10981 tgaacgatgt agcaagagca agaggaatgg cggagctggc caagcaaaca gggctaggca
    11041 gagagagcct atataaaacc ctagccaaag gcagcaaacc acgctttgac actattcaaa
    11101 aaattctagg ggcattcaat ttagtgctta ttccacaagt caaaaatggc taaaacttat
    11161 cacttgctac ctgtcaaaac ctcactttta aatagccgtt gatggatatt gacggctttt
    11221 tatttgctcc ttgcgtgcgt actgctccga aaattccgca ctattcgcaa aaccttaatg
    11281 aaatatgacc gcttgaatgc tcttttttat agcgtccgga aacccatctt tagcctattt
    11341 tgatttactg taataaaaca cagcttatta cttgtaattt atctgaataa ttagcaaaat
    11401 acaacctatc aagttcaatc cgtaactata cggatttatt caaattagcg tggatagtgg
    11461 cggagtaatt aaccggcacg aaaggagaaa gccctttatt tctctttcca cgctctcaca
    11521 gtaaagggat acgttaaagg ggcgcttatg gcagatcaca gtcaatttat ttctaggctt
    11581 gaaaatcgta ttgagcccaa aatcagcttt caagaactga tacaagaatt atcaaactat
    11641 acaaataaac ctttttcaca tatagcggat aaattgaaaa gcctcatttt ttcctttcag
    11701 caaaatggaa tatatacgaa tgcttttgta aattgcactc tctttgaaga tggtgaaagc
    11761 tatgctattg agcccaaaac actacatttc aaagacgctt tcgatcagcc taaaggcgtt
    11821 ttaagtgatg ttattgctca aaattctatt gatgttgaac atttaaatgc ttattacgta
    11881 acagcaagag aaataacaca gctgattaaa acacaatcgc caaccttgtt agataaatta
    11941 accaccaagc aaacacaatc agagattagc caaattcaaa atgattatat ttctgtttat
    12001 gacttcatag aatgggcaag taaacattac tcaagtctta gtgaaacagc taacgattta
    12061 aaccgcttac tcaaagataa aaatatacag ctttatcgac aatatggcgg aataagtcca
    12121 agcattgata aagataatac taatttaaaa gcagcctttg attttgtagc aattaataac
    12181 ggatatgaaa aacaatcaag cagctttaat tttgatgatg atattccgtt ctaggtggca
    12241 gcaatgaatt taaatgattt ccaaaattta cttttaaata aacaagaatt agaagcagca
    12301 ctagggaaaa agctcgattt ttctgagata acacctgatt atttagcaga ctattcacgt
    12361 ttttaagcct ctattctgaa accgagctta cccattgccc gagcttttaa ttgtgctagg
    12421 caaccgaata gcgaagctgg aacaacaaca taacgcaatg ccaagcgaaa ccgattcaat
    12481 cacactcggc attttaagaa aacaacttag ccaactgtta aaagtggcgg aaagaataaa
    12541 ggaataaacc aaaatgaaac acgagcttaa tttagcgggt attactgctt taatgaatga
    12601 acctatcaaa gcaaccttga gctttttaga ttttccgcat atccgaattg aacgactgca
    12661 ccacgataac ggcagaccgt tttttatcgg tgtgctttct cttgaccttg aagatcatat
    12721 caatattgaa atggcagggg ctacgggctt tttagaggct ctagcgatta ttgcctatca
    12781 tcaacagcta accgccacgc cgctattagt gaatgatgac ttattgagtg aaatcaacaa
    12841 gctcccccac ccacaacgaa caaacccatt tattgaccga cacggcaacg aaattacacg
    12901 ggagcagatg agcaaagaat accgagaaaa aatcgattat gcctttgctg aaaagcgaat
    12961 ggcggagggg aaagaatgac cgaactcaca ccaaaacaag aggctttttg ctttgcttat
    13021 attgaaaccg gcaatgctag cgaagcctac cgccaagcct atgaaaccga agatatgaag
    13081 tccgaaaccg tccaccgaaa agctaaagag ctaatggata acggcaagat tacggcaagg
    13141 attgaggaac tgaaagccga acacgcagaa cgccataaat taaccgttga tgacctttta
    13201 aaggagctgg aagaggctcg tatactggcg agagagaaag aaaaccctaa cgcaatgact
    13261 caagccacaa tgggcaaagc gaagttgcta gggctggata agcaggttac cgatccgtgc
    13321 tttgatggtg aaaccggtaa aggagatatg attttaagtg taaactgctc aagcattaaa
    13381 gacgggaaag cacttgatga aacttgtatt ttaaaggcag gaacacacga atttatcaca
    13441 cgggacagct ttattttcta ccgccatata agaatcgatt cgttagatga gattaaggca
    13501 aatatagaag ccggttattt cattcaaaaa gccctaatta atgatgaagc ctatcaacaa
    13561 atactaaaag gcgtactatc gtcaaaatca gtaacgccta gatataaacg cttcctaaaa
    13621 aatgcaatcc gccaaagtgc ttgccctgat attctagccg aaccttaagc cgttgatgag
    13681 aattaaggcc ttttttgccc tttaaccact accaaaaccg ctaatatttc ccctctaaaa
    13741 gtggctaaca gtgggtaaaa atcaaagtta cccacttaac ccactgtaac ccacttgctt
    13801 cccactggct ataaagcctt atatatcaag gcttccaaca aatcagtggg taaagtgggt
    13861 aaaatttcaa aaagttttaa attttttctt tataaactta aactactata gaaaactacg
    13921 aactaaattt ccctatacac gatccgaata attgtacaca aaatagccta agcaataagg
    13981 cactttgaat tttaggagta tatttaggag tacaaataaa atttgaatta accaaaaccc
    14041 ttatttatca atgcttgaag tgatacaatt cagatgaccc cagcaccaaa ttataatcct
    14101 atacggttca accgatacct aaaaagcctt gaaaatcaat gtttcaaggc ttttttagta
    14161 acattatgtt tgaaccgatt caagtgtagc ttcaggttac ataaagctta ccactcatat
    14221 ccaactttga gtgaaatgaa tttttgttct tgtaatgtat ttccttttgt aaagccagca
    14281 tgtaccgaac ttgatacccc tttatagtgg agtgtaatcc ctacttcttg cttaaaataa
    14341 cggcctatat tttgatttaa ggaaaattca tttaacttag ttttaagtgt tccgtggctt
    14401 gcatcaacaa aatagcttcc taattcaggt tttaccttta attcattaaa tataaaagtt
    14461 ttatttaatg ctaaaccagc ttgaatggcc aaaagatcta ccctatcagt ctcaaatttt
    14521 gtgttctcta attgggcatt tgcagatgtt aaatgatgat agcgcatacc aaatgacggt
    14581 tgtaggttaa aacttgcaac ttccaacgtt ttacctaccg ttaatcctaa agaatataca
    14641 tttctggcta gttttatcgt ctggctttga tggcttaatt tgttattcgc acgcccaatg
    14701 ctaccatcaa tccctacata aatgccattt tcccatgttt tcttaccata aaaagaaaac
    14761 atagttaaat cccctttacc attatagtag ttctgaaaat cattaaaggt taattgcaac
    14821 ttgtacttag caatgtctaa atcataaatt aaaggaataa ctcttaccta aatcccatca
    14881 ccaaacaaac cttgctcatc ttcaaagtat tgattcatat caaaagccgg tttttgttca
    14941 gaggatttgc cgataatgcg agccggtaca cctgctgctg tggcgtgatc aggcacaggt
    15001 tgtagcacca ctgaatttgc cccgatttta gaatagcgtc cgatttcaat attaccgaga
    15061 atttttgcac cggctccaat catcacgcct tcacggattt tcgggtggcg gtcgccattt
    15121 tctttccctg taccgcctag tgttacacct tgtaaaatcg agacatcatt ttcgatcaca
    15181 gaggtttcac ccaccacaat accggtggcg tggtcaaaca taattccgca accgaccttt
    15241 gccgcaggat gaatatccac atcaaaggca acagaaattt cattttgtaa ataaaccgct
    15301 aatgctttcc tgccttgatt ccaaagataa tgcgtcaccc gatagctttg taaagcgtgg
    15361 aagcctttta agtacagcag aggtgtactc catttgtcca ccgcaggatc tctagttctg
    15421 accgcattaa tatcacaagc tgcactagca ataatttgtg gctctgctcg ataagcttcc
    15481 tcaataattt cttttaaggc gattgccggc ataatcgggt tttctaactt attcgccaaa
    15541 atataactta acgcatcgcc tagattatgg tgttttaaaa tggtagcgtg gaaaaaactt
    15601 gctaacatag gttcacaatt cgccagctct ttggcttcat ctcgaattgc ttgccaaatc
    15661 tgattaattt cactctgctg cattttattc tcctttcttt attcgccttt tcgttcacgc
    15721 cccaacaagg ttttcaccac atccgaagcc tgtttgccac aaaataacat ttggtaaatt
    15781 tgttctacaa tcggcatttc aacgccctgt gtttgagcga gcaaataggc ttctttggta
    15841 ttataaaatc cttctaccac ttgaccgatt tccgctatcg cgacttctgc cgattttcct
    15901 tgccctaacg ccaaaccaaa tcggcggttt cgggattggt tatcggtaca cgtcagcact
    15961 aaatctccaa gccccgccat tccggtaaag gttttcggat cagccccgag cgaaacaccc
    16021 aaacggctaa tctccgccag ccctcgagta atcaaggcgg tacgagcatt cgccccgaat
    16081 cccattccgt ctgaaatacc ggcaccaatt gcaatcacat ttttaatagc cccaccgagt
    16141 tgcacaccga taatatcatt gttgaggtaa actcggaacg ctttggaaca gtgactccgt
    16201 ttttgcattt gatcggcaaa aacaggatca gttgaggcaa gcgaaatcgc tgttggcaag
    16261 cctgccgcca gttctttggc aaaagtcgga ccggaaagca ccgcaagcgg gtaaatttcc
    16321 cccaaaattt ccttagctac cgtttgcaac aaacgcccgg tatctcgctc cagccctttg
    16381 gttgcccaca ttatacggtg atcttgggac aaaaaaggct tgatttgagc caatacttca
    16441 gagaatacat gacttggcac cacaatcagc agatctttcg atttttgtac cgctgtagca
    16501 agatctgcga caatttctaa ggcttccggg aatacaatat caggcagaaa atcttggttc
    16561 attcgctctg atgccaaaac ggccattttg tcgggattat gcccccataa ataggttttg
    16621 tgaccatttc gagaaagggc aatggctaaa gctgttccat aagaacctgc acctaatacc
    16681 gtgattgggg cagaatagat ttcactcata tttcctctgt tcggcttatt tagaaaattg
    16741 caaaaaatag tagaaaaaat aaccgcttgt aaaaaaatag gtatgccttg catacctatt
    16801 ttctatctaa aatgcttagt tcgctaaagc cggctcttct gcactttctt cttggcgttg
    16861 gagataatcc ataaataacg catcaaagtt taccggtgag agatttaatg ccgggaatgt
    16921 accacgattc acaaggcttg agattagctc acgagcataa ggataaagca cattcggaca
    16981 ttgtgaagct aagcagtgag caagttgaat gccttctaaa cctttaatag taaacacacc
    17041 tgcttgtttt acttcacaaa tgaaagcgac atcattgctg tcttctaacg tagtttgcac
    17101 cgtaatgtgt aaggtaactt cgtataaatc ttcaccaatt tctttggttt cagtatctaa
    17161 ctcaaagcct aattgtggtt tccactcttg ttggaaaata gtcggtaaat ttggtgcttc
    17221 aaatgaaaca tcttttacat aaatgcgttg aatttgaagc tcaaaagggg tttgtgtagc
    17281 ttcttctgtt gatgcaactt gattttcttc tgacataaaa tttccttaat aatagattat
    17341 ttatgttttt taatagttgg taggcttgct gcacgccagc cgccaatccc ttcttttaat
    17401 acataaactc tgctaaagcc ttgtttagca agatctgccg caacaccacc tgaagtgaag
    17461 tcattagtgt ctactacaat taccgggcga gctttgtatt tatcaatctg attgatttta
    17521 gctgctttaa tgtctgacgg taacacgtga atgctatcaa taatatgacc ggcacggaac
    17581 tcttcatcag aacgtaaatc aaccactact gcctcttctt tattaatcag ctgtgtagcc
    17641 tgtgcgttat cgacaatttt atatttttgc gttgcacttt tataaaagct aaaaattacc
    17701 gcaatcaata atgcaaccca agcaaacacc atcaaggtat gattggcaaa aaattgctct
    17761 aattgttgag caaaagttag ttgttccata attcaatttc cttaacatca aaaaataagc
    17821 ggtcgttttg atgcaaattt atcactaaat ttaaccgctt gtaaaagtaa taaaaggtga
    17881 gcaaaagccc accttataag gaaattattg agcttgttgt gacattactt cgtcaaatga
    17941 cattgttttt tcagtcactt tcgctttcgc tagcactgca tcaaccgctt gctcttctaa
    18001 taccacattg cggatatttt cagttaattg acggtttttc gcatagtgag caaccacttc
    18061 agccggttgt tcgtaagctg aagcgatatc tgcgatcatc tcttcaacac gtttttcatc
    18121 tacttttaat tcgttagaac cgatgattga agataataat aagcccactt gaacacggcg
    18181 tttagcttct gcttcaaata attcagccgg taattgagct gccatttcag gcttaccacc
    18241 aaaacgttgc accgcttgtt ggcgtaatac gttgatttct tcttcaaccg cagcagccgg
    18301 cacttcaaca tcattttgag caattaagcc gttgattact tgagttttca cacgtgaagt
    18361 gactgcattt ttaagttcac gttgcatatt tttcttaatt tctgcgcgta attcttccac
    18421 tgattttgca ttaccgaatt ttttcacaaa ctcttcggtt aattccggta ataccatctc
    18481 ttctactttt ttcaaggtaa ttgcaaattt cgctgctttg ccttttaagt tttcagcgtg
    18541 gtattcttct gggaaagtca catcaatgtc gaattgctca cccgctttac gacctacgat
    18601 tccgtcttca aaccccggga tcatacgacc ttgccccata aataacacga agtctgatgc
    18661 tttaccgcct tcgaattctt caccatctac tgaaccaacg aaatcaatag ttacacgaga
    18721 ttcggctttt gcagcctctt ggctttctga ccaagtcgct tgttgtttgc gtaatacatc
    18781 taccattttg tctaaatcag cgtctgcgat ttcaacaacc ggtttttcta cttcgatatt
    18841 ctctaaacct tttaattcca cttctgggaa tacttcaaat tccgcagtaa agctgaagtc
    18901 ttgacctggt tggtagttgt ttggcgtgaa agtagggcga cctgccaagt tgattttttc
    18961 agcaatgacg gcttcaaaga atgcacgttg catttcatca gataacacat cttgacgggc
    19021 tgcaatacca aaacgttgtt cgataattga gtgtggcact ttacctttac ggaagccatc
    19081 tacacgagca tttttcgcat agccttttaa ttgttctttg tatgctgctt cgattttatc
    19141 agctggtacg ttaatagtaa cacggcgttt taagccttct aatgtttcaa ttgaaaatga
    19201 cattcttaaa cctcggttta gggatataaa aaagatatac aaatagacgg ttattgtagc
    19261 gttctatcaa gaaactgtcg agaagaaact cattcgcaaa taaacagttt tgtaaaaaat
    19321 ccctaaaatc tgactgcttg tcaatgggct tgcctacaag cggtcttttt tcaccgattt
    19381 ttgcaaatga aatgatatga tatggctagc ttaatcggca taaaagcaaa agaggcatac
    19441 ctttcgatat gcctctttct agtttttatt tagcttttca atttatcaaa caatcttaat
    19501 tatttgatga ttttagctac aacgcccgca cctactgtac gaccaccttc acgaatcgca
    19561 aaacgtaaac cttcgtccat cgcgattggg tgaattaggc taacagtcat tttgatgttg
    19621 tcgcccggca ttaccatctc tacaccttcc ggtaattcga ttgtacctgt tacgtccgtt
    19681 gtacggaagt agaactgtgg acggtaacct ttgaagaatg gagtgtgacg accaccttct
    19741 tcttttgata atacgtaaac ttctgattcg aagtctgtgt gtggagtgat tgaacccggt
    19801 ttcgctaata cttgaccacg ttcgatttct tcacgtttag taccacgtaa taatgcacct
    19861 acgttctcac ccgcacgacc ttcgtctaat aatttacgga acatctcaac acctgttacg
    19921 gttgttttcg ctgtatcttt gatacctacg atttcaactt catcaccagt gcggatgata
    19981 ccacgctcaa cacgacctgt tactactgta ccacgacctg aaattgagaa tacgtcttcg
    20041 attggtaata agaatggttt atcaatcgca cgctcaggct ctggaatgta tgtgtctaag
    20101 tggtttgcta attcaaggat tttctcttcc cactctgcta cgccgtttaa cgcttgtaac
    20161 gctgaaccac gtacgattgg agtgtcatca cctgggaagt cgtattgtga aagaagttca
    20221 cgcacttcca tctcaactaa ttctaataac tcttcgtcat ctaccatgtc gcatttgttt
    20281 aagaatacga tgatgtatgg tacacctact tggcgaccta ataagatgtg ctcacgagtt
    20341 tgtggcattg gaccgtcagt tgctgctact actaagatag cgccgtccat ttgtgccgca
    20401 ccggtaatca tgtttttaac atagtccgcg tgtcccgggc agtcaacgtg tgcgtagtga
    20461 cgagttgctg tatcgtactc aacgtgtgaa gtgttgatgg tgataccacg cgctttttct
    20521 tctggcgcgt tatcgatttg gtcaaatgca cgagctgcac caccgaagtg ttttgctaat
    20581 acggtagtga ttgctgctgt taaagttgtt ttaccatggt caacgtggcc gattgtaccc
    20641 acattaacgt gcggttttgt acgttcaaat ttttctttag acactttaat atcttcctaa
    20701 aaaatgagcc atagccctat tgctatggct caggttaaac aaattatttt ctacgagctt
    20761 caataattgc atcagcaacg tttttcggtg cttcagcata ttttaaaggt tccatagagt
    20821 atgatgcacg accttgagtt tgtgaacgta agtctgttgc ataaccaaac atttctgaaa
    20881 gtggaacttc agcattgatc ttaacaacga actcgttcgc ttcttgaccg ttaaccattg
    20941 cacgacgacg gcttaagtca ccgattacat cacccacgta atccggtgga gtttcaactt
    21001 ccactttcat gattggctca agtaataccg ggcttgcttt tgcgaacgcc gctttaaatg
    21061 ctaatgatgc agcaagttta aacgcaagtt cagatgagtc aacatcgtgg tatgaaccga
    21121 agtgtaaacg cacacctaaa tctactaccg ggtaacctgc taacggacca gatttaagct
    21181 gttcttggat acctttatca accgcaggaa tgtattcacc agggattaca ccacctttga
    21241 tctcgtttac aaactcataa cccggacctt cagcatctaa tgggtataag tcgatcacaa
    21301 cgtgaccata ttgaccacga ccaccagatt gttttgcgtg tttaccttca acatcattaa
    21361 cacgagtacg gatagtttca cggtaagata cttgtggttt accgatattt gcttccactt
    21421 taaactcacg tttcatacgg tcaacgatga tgtctaagtg taactcaccc atacctgaaa
    21481 tgatcgtttc accagattct tcatctgtgt gaacacggaa tgaagggtct tcttgtgcta
    21541 aacgacctaa agctaagccc attttctctt ggtcagcttt ggtttttggt tcaaccgcaa
    21601 cagagattac cggctcaggg aattccatac gctcaagaat gattggtgca tcgattgcac
    21661 ataatgtgtc acctgtacca acatctttta aaccgattgc tgcagcgata tcgcccgcac
    21721 gaacttcttt gatctcttca cgtttgtttg cgtgcatctg tacgatacga ccaaaacgtt
    21781 cacgtttttg ttttactgag ttgtaaactg tatcaccaga gttaattaca ccagagtaaa
    21841 cacggaagaa ggttaagtta cctacgaatg ggtctgttgc aattttgaat gctaatgaag
    21901 caaatggctc atcgtcgctt gcgtgacgct caccttcagt ttcatcttca ttgatacctt
    21961 taattgcagg aatatcagtt ggtgccggta agtaatcgat taccgcatca agcattgctt
    22021 gtacaccttt gtttttaaat gcagaaccac agcaaacagg gattacttca cctgctaata
    22081 cacgttgacg taatgctgct ttgatttcat cttcagttaa ttcttcacca gagaagaatt
    22141 tttccattaa ttcttcagaa gcttcagctg ctgcttcaac aagcattgca cggtgttctt
    22201 cacaagcttc aagcatatct gccggaatat cttcataagt gaaggtcata ccttgatcag
    22261 cttcgttcca gttgattgct ttcattttga ttaaatcaac aacacctttg aagctgtctt
    22321 ctgcaccgat tggaagttgt aatgcaactg agttaccacc taaacgcgtt ttgatttgct
    22381 caacaacacg taagaagttt gcacctgtac ggtccatttt gtttacgaac gcgatacgtg
    22441 gcactttata tttgttagct tgacgccata cagtttcaga ttgtggttga acaccaccaa
    22501 ctgcacaata aaccatcacc gcaccatcaa gtacacgcat tgaacgttct acttcgatag
    22561 taaagtcaac gtgtcccgga gtatcaataa cgttgatacg gtgttgtgga tattgttgtg
    22621 acataccaga ccagaatgct gttgttgcag cagatgtgat cgtgatacca cgctcttgtt
    22681 cttgttccat ccagtccatt gttgcagcac catcgtgaac ttcaccgatt ttgtgactta
    22741 cacctgtata gaacaagata cgctctgtag tagttgtttt acccgcatcg atgtgcgcac
    22801 tgataccgat gttacggtaa agtgaaatag gggttgtacg agccattttt atttattacc
    22861 ttgtttgggg tttaaattaa aattcttaat aagggtaagg cttcaccgca aactgagatg
    22921 aagcctttga taagtttgct taaacgatta ccaacggaag tgagcaaacg ctttgttagc
    22981 ttcagccata cggtgaacgt cttcacgttt cttcactgct gaacctttgt tgtctgctgc
    23041 atctgataat tcgttagcta aacgtaatgc cattgatttg tcaccacgtt tacgagcggc
    23101 ttctacgatc caacgcattg ctaaagcatt acgacgggtt gggcgaactt ctacaggaac
    23161 ttggtaagta gaaccaccca cacggcgaga tttaacctca acagttggac gtacgttttc
    23221 taatgcgatt tcgaaagctt ctaacgcttc tttaccagaa cgttgtgtta aagtttctaa
    23281 tgcaccgtaa acgatttttt ctgcagtaga ttttttacca tctaccatta acacgttaat
    23341 aaattttgca agtaattctg aaccgaactt cggatctgga agaattttgc gtggttcaat
    23401 actacgacga cgtggcattg gaaatttctc cgtatattaa atcttcagga tatccaaaac
    23461 tcatctaatc tgccttaagg catcttgact ggagtttatg gtttaaatat taaaatttag
    23521 acgtttggcc ttactcaacg gagaaccatt aagctttagg acgtttaacg ccgtatttag
    23581 aacgaccttg tttacgatct ttaacgcctg cacagtcaag tgcaccacgt acagtatggt
    23641 aacgaacacc cggtaagtct ttaacacgac caccacggat taatacaaca ctgtgttctt
    23701 gaaggttgtg accttcacca ccgatgtatg aagttacttc aaagccattt gttaaacgaa
    23761 tacgacatac tttacgtaat gctgagttcg gttttttagg tgtagtagtg tatacacgag
    23821 tacacacgcc acgtttctgc gggcaagcct ctaatgcagg aacgttactt tttacaacct
    23881 ttttcacacg cggtttgcgt actagctggt tgatagttgc cattaaaaaa gctccagtta
    23941 aaattattaa aaataaaatt aaaaacatcc tttcacacga aaggacggtg aattctaaat
    24001 tgaacgtgga taaaagtcaa gcacagtaag agaacaacaa tgatcatttg ttaatcaatg
    24061 gaagtaattt ttctagcact tgtgaagagg taatattttc cattttatct gcttttagat
    24121 aaaactgatt ttgcccgtaa gccccgataa gttttggatc ggttgcccca tataaaatca
    24181 catttggctt atctaacgca gccgccaaat ggctcaagcc ggtatccacc gacaccactg
    24241 ccgctgctcc cgcaagttga gtagcaatat cggttaagct catttttggc aataccttag
    24301 cattattcgc cacactcgct aaacgctccg cccgttcttt ttcggcttgg tttccccaag
    24361 gcaatctgac tgccagattg tgcttatcca acgcttgaat caactccgcc caataggctt
    24421 cttgccaatg tttatccgct cgggtagtgg cgtgaatcag cataatgtaa gcggtcgttt
    24481 tttgaggatt ttttgcaaaa tgttgtgcaa tgcaataatc gccccgttcg gttggcaaag
    24541 cataacctaa tgattttgca cataattttc tgatgcgttc tacagcgtgt tgttggtagg
    24601 ggatattaaa cgtttcatcg taaaacagac tacttaaccc ttctcgggca gagtttttat
    24661 catagccaaa ttttttgcct ttggcttggc gagttactaa caccgcactt ttaatcagcc
    24721 cttgagcatc aattaccgca tcatactgct cactttttag ctgttttaaa aactgctgcc
    24781 attctaccca agtctgtctt tggcaaaggt ttttccgcca gcggcgaata gccaccggaa
    24841 ttactttatt taccgctgaa tgccacgcag gaatttcggt aaaattctcc tccaccaccc
    24901 aatctacttt taaatcggga atagcatttt gcatatcggt tatggctgga agcgtatgta
    24961 atacatctcc cattgatgag gttttaacga ttaaaatttt catcttttat aaacaaacaa
    25021 gcggtctttt tttgcaaaaa attggcaaat tcaaccgctt gttatccatt taaactaaca
    25081 gttcagctaa tttgtccatc accatttcag gctgaatatc aattaaactt tggtgatagc
    25141 cctctgcccc ttcgcctttg cggattttaa tcaaaccgcc ttcaattaag cgcatgatct
    25201 cggcattttg ggataacggc ggcgtatatt gtgggctggt cggtccatat aaggcgacca
    25261 gcggtttatt tagtgctgcg gcaatgtgca ttaagccgga gtcattgctc acgactgcat
    25321 tacaatctgc aatcaaatct accgcttggt ttaaatcggt ttgcccggct aaattcaggc
    25381 aatagcgttg taaattttca ggtaatgcca agcgaatttg ctcaccggcg gcttcatctt
    25441 ttttcgagcc aaataaccgt accgaatagc cttgctcaat caacattttt gccaatattg
    25501 cataatgata atgcggccaa cgttttgccg gtccaaattc agcccctgga caaaagccga
    25561 tggcaggacg gttttccgca taagccaact gtttttcaaa tttcgctttg gtctgctcaa
    25621 tttgttcgct atcagttgtg aggtatggat aagcaatcgg caactgttgt gcggttggaa
    25681 cagtagcctt ttcaaacgcc aaggctacat agcgttgcac catcattggg tagtcgtttt
    25741 tattactgcg aagatcattt aagaaaaaat atctactttc ccctttccaa ccacgacgtc
    25801 tcgcaatttt cgcaaacagt ggaataaagg cagactttaa tgaattaggc aatacaatcg
    25861 ccatatcata ttgatttctc agggattttc cgagtcggta gcgttcacac aaacgaaatg
    25921 aaccgtgtcc aatcggcatt gaaatcgcat tacgcacctc aggcatacgg gctaaaagcg
    25981 gacaacacca atcgggtgcc attacatcaa tttggcaatt cggatactgt attttaagct
    26041 gttgataaag tgcgtgcgac atcatcatat cacccaccca agacggtcct ataactaaaa
    26101 tattcatttg caaaattctc ttaaaaattt attcacaatc cttgtaagga ttgttcacag
    26161 cttcgctgcc gttggcaaag ccaacgttca aaaagcgata ctttttgtgt ccgcttgtta
    26221 ctgctttatg caatttgccg ctaacgtttt tttagtgttg ttatacaaaa atgctttacc
    26281 actacgggtt tcatgccaag tccaacggat attagtgtat tttttaccat ctctcgttac
    26341 agaaggtgaa agctgatgcg ttgtcccttg ataactcact gtgactattt ccttttttaa
    26401 cgcttttttt gttcgtccct ggcgttcaac ttcaaccttc ttatcattct cacaacgata
    26461 taaactcact ttaggtgctt gtgctatcag tttagtcact ttctttactg actctttttc
    26521 cttttgtact tgatgaattt gctcaacagg ggtaaccact gtactacaag caactaacat
    26581 cgctgagctt agcgttaagt agataagttt gtaagagggg caaaataaat tcatccttta
    26641 tctccttttt aaataaaaga gcaacgtttg tagcgttgct ctttttcttc attttattta
    26701 tttaaaagta tagctaccgt ttgcttgacg ggtaaatttg ccgcctgagc caatgctcat
    26761 ttcaaccaca cggttatttt tatctaaacg aacggttact cgctcgccta cttttaaatt
    26821 actcaccacg ttattgactt tgctcatcgc attaacgtct gagatattta aattgttatc
    26881 acggaacact tgcattagtg atacaccttt tggcacagtc attgttttgg ttgctaccgc
    26941 atttgccgac tcggcagccg gtgctgcttt taccgcttca gtttttgtcg gagctttctc
    27001 aactggttta gctgctgttt ttgccgtttc ttttgctgcc agtgtagcac gttcggtttt
    27061 cacttcagtt ttagcagggg ctttaggctg ttgttttacc gttgtttcag gttggaacac
    27121 cacgctattt tccgttttag gcttaatcgc cggttgtgca acaaccggtt tattttccac
    27181 cggtttcacc gcaacaggtt gctcaactac tgcttgtgat tgtgtttgcg actggctatc
    27241 ttgtgacggt ttagccattg tttgctcggt ttgggctgga gcaactgtta cagactcttg
    27301 ttgagcggct tgagcttgtt cttgagcttt tgcagcttca gcggcttctt gttctgcacg
    27361 agcttgttct tccgcacgtt tcgcttcagc ttcatcaacc ggtcggaatt caatcggcaa
    27421 gctaccacct tgctgagatt gtagctcttc gacagtttcc ggcgtacttg gttttaacaa
    27481 gaaaaacagt accaataatg ctaacgccaa caatgccact aataataaac ggcgggtttt
    27541 aggtggcatt ttagctttaa tctctttggt tttagtggct gcagctgccg cagtggctgc
    27601 tgcggcagct gttgccgcat ttggaataat acgctcagta gtgaaactct cgggtgcagg
    27661 tttaaccact tctttttcca cattttcttg tgcttcaacc gcgttaaaag atgcggttga
    27721 tacactttct tcaaccgaat gaatggtatt atccggctct actgcttctg tagcttctga
    27781 acttggagta aattggaatt cttttgcctg cttagccgaa aagacatcag ccgtatgatc
    27841 ttctacttta gcatcaggtc ttttcataat tggggtaaac gtatgccccg gtgctttggt
    27901 tgaacgcaac gaaacataag gggcttgagc tgtatctgtt ttggttgctt cagcgtcttg
    27961 agaggtaacc gaagattcac caaaaaccgg ttctttgcga aaattatttt gtgtcatatt
    28021 aattccaaat aatagcgttg ttaatgagta taaaaatggc gatattctaa agcaattcag
    28081 ccgctatttg aatttattta actaaattta cgcaactagc ggtcattttt gcctaatttt
    28141 ttgcaaatct atttactttc attgaatttc agaccaaatg cacgtctaga agtttagcca
    28201 ttttctattt tttcgatctg tgtcgaaaaa tttatttttg ccggttgagt tctattttat
    28261 tccctcttaa tcttcctttc gacctttcaa caactaataa ggaaatccta tgaagaaaat
    28321 caaacaactt ggtctaacat tcttgtttgg cttaaatgca atggcttttg cccaaacacc
    28381 gccaactaca atgcctgttg aacaaaatgc agtcactcaa cccgtacagc aaacacaaat
    28441 caccaacgct aatgcggtaa atatcaatac tgctagtgct gctgaattgc aagacaagct
    28501 agtgggaatt gggcagaaaa aagctcaagc gattgtcgat taccgtacta aaaacggcaa
    28561 ttttaaaaac attgagcaac ttgctgaagt ctccggaatt gggcaagcaa cggtagaaaa
    28621 aaatcgagcc aatattattt tagaataaga caaccaaatt gttgaagtgg aattcctaca
    28681 aagcccctat ctgttttttt ctttgtagcc acttcaacac cttaaagatt ttttatctat
    28741 tttgcattgt atttgctata cttcgccccc aattaaacgc aaattctcgt ttttaaataa
    28801 aaggaaaacg caatgcaatt aaaaaaatat ccagttccaa cctatttcca acgtgtgaaa
    28861 atcgctctgc actatttact gccacaactg gcaattaccc gtgcggcagg ttggttagca
    28921 gagcaaaaat ggggcgtagt tactcacctt atcatcaaac tgtttgcaaa acagtataaa
    28981 gtcaatttat ctgaagctaa aaaaaccgag ccgtcagatt atgctacttt taatgaattt
    29041 tttatccgtg aattaaaaga aaacgcacgc ccgattaatc aagatccaaa tacactttgc
    29101 ttaccggcag aaggtaaagt cagcgaatca ggcgaaattt cggataaccg tttattacaa
    29161 gcaaaagggc atcattttac gctagaaacc ttattggcaa atgatgaaga aatggcggca
    29221 aaatttaaag acggcacatt tattaccacc tacttatcgc caactgatta ccatcgtgta
    29281 catatgccgt gcgatggaac attgcgtaaa atgatttatg tgccgggcga attgttctcc
    29341 gtcaatccgt ttttagccga acacgttcca aacttattcg ctcgcaatga gcgtgtgatt
    29401 tgtgaatttg acaccgcatt cggaccaatg ctacagattt tggtcggtgc aacggttacc
    29461 gcaagtatga gtacggtttg ggctggcgta attaatccgc ctcgcgctga tgaagtggta
    29521 gtttggaatt acgaaaccga aggcgaaaaa gccatcaaac tccaaaaagg cgaagaaatg
    29581 ggagctttcc gtttaggctc aaccgtaatt aacctcttcc cgaaaggtaa agtacatctc
    29641 aaccctgcac ttattgcagg aatgcaaacc cgaatggggg aagagttggg tagaattatc
    29701 aattaaatcc tgagttaatt ttacctaaac tgtttgctat aatcttccga taagaaactc
    29761 ttatcggaag gaaaaatatg tacacacttc aagaattaaa gcagatgaac gagcaagaaa
    29821 ttcgctctcg attaatctct cctgcaatta gaaatgcagg atggtcggat agacaaattg
    29881 gcgaagagta cacatttaaa accaataaac gatttacaga tgggcaagta gttgttgatc
    29941 caaaaacgac gcaaactaaa cgcatcgaag caaaacgggt tgattatctg ctctatactt
    30001 ccgcaaatca aaaaattgcc gtggtcgagg ccaaagataa ccatcactct tcccgacacg
    30061 gcttacagca agcaatgaca tacgctcgat tgcttgatgt cccttttgca tatagctcaa
    30121 atggtgatga gtttgtggaa cacgatttta tcactggcgt acaacgaacc cttccgatgt
    30181 cagcatttcc tactcccgac gaactccacc aacgttgggc gaaacaatat accaccgaag
    30241 agctgaaaat tattcaacag ccttattaca ccagtagcac tgacaccttt aaagagcctc
    30301 gttactacca agaaattgcg attaaccgta ctgttgaagc tgtagcaaaa ggtcagcaga
    30361 ggattttatt ggtaatggca acaggcacgg gtaaaaccta tacggctttc caaattatcc
    30421 atcgtttaaa aaccagtggt gcgaaaaaga aaattttatt tcttgccgat cgcaatgtac
    30481 tagtcgatca gccaatgatg caagacttca aaccgtttaa agacaaaatg gtgaaagtca
    30541 gcaataaaaa gctcgacagt gcttatgaag tctatcttgc actttatcaa cagcttgacg
    30601 gtgaaaccga taacgaactg tttaagcagt tccaaccctc tttctttgat cttattgtga
    30661 tcgatgaatg tcatcgtggt tcagcaaaag aagattctga ctggcgtgct attttgaagt
    30721 atttcaagga cgccacccat atcggtatga ctgcaacccc caaagaaacc gatgatgcca
    30781 gcaacattac ctattttggc gagccgattt atacctatag cctcaaacaa ggtattgaag
    30841 acggctttct tgccccttat cgagtgattc gtgttgatct ggactgtgat ttaaaaggct
    30901 ggcgaccaac caaaggttta aaagatcatc aaggtaatga gattgaagat cgcctctata
    30961 cagtcaaaga tttcgattac aacattgtgc taaatgatcg cacccgcttg gttgcggaga
    31021 gaatttgcga atttttacgc aaaaccgacc gcttgcagaa aacaatagtc ttctgtgcca
    31081 acatcaacca tgcagagcga atggtggcag agctttcacg cctcaatgcc gatatgttga
    31141 aacacaattc caaatatgtc tgccaaatta caggcgacca atcaggcaaa ggcgttgatt
    31201 tagaagaatt ttgtgatgta gcaaatgaag ggaaagatta ccctgtgatt gccgtaacct
    31261 ctaaattgat gacaacaggt gtagatagca aaacctgtaa gctggttgta cttgatgcaa
    31321 acattcaatc aatgacggaa tttaaacaaa ttatcggacg aggcactcgt cttcgccctg
    31381 atttcggcaa agaatttttc accattttag attttcgagg cgttactcgc ctgtttgctg
    31441 atccggcatt tgatggtgag ccggtggtga ttttagatgt accggaaaat aagccacttg
    31501 tcgaacaacc gcttcctaaa cccagtgata aggacatcat taaagacccc gagctaaagc
    31561 catataaaat cccggtagtt gtcgatttcg gcacactcaa attacgcatt ttagacgaga
    31621 aagtccaata tctgaatgag cagggcgagc tggtttctga agatattgat ctgttctcaa
    31681 aacgggaaat gcaaaaagag ttcggcagtt acgaacagtt ccaacagcaa tggacaacaa
    31741 gcggtgaaat tttctcgaaa ttttacaccg atccaaaatg gctggcagcc cttcgccaaa
    31801 cacgccaatt cagccacgat gttgaagact ttgatgtatt aagccacatc tcctttggca
    31861 aaaaaccact gactaaaacc gaacgagcag aaaaagtgaa acaaagtggc tatgtggagc
    31921 agtattcgcc cgaaaaccag caagttttag ggttgctgct taatgaatat gtcaaatccg
    31981 gcaatcaaga tctgactaaa accgaaattt taaagacacc gcaattcagc cgttttggag
    32041 gtctagtgtc tattattaaa aatttcggcg gtaaagaact ctaccagaaa gcggtaaaag
    32101 gcttagaaaa gatgatttat tcggaataac aagcggttat tttacaacaa aattttacag
    32161 ataaacaagg atcacaatga gcctcaacaa catagtaaaa cgcctgcaag atgtaatgcg
    32221 taacgatgca gggattaacg gtgatgccca acgcattgaa cagatcgtct ggatcttatt
    32281 cttgaaaatt tacgatgcta aagaacaaga gtgggaactg gaaaacgatg aatatcactc
    32341 aattttgccg aattttttac gctggcaaaa ttgggcggaa gataaaaaag acggcaaagc
    32401 gatgactggt gatgaattac tctctttcgt caataacgaa cttttcccga ctttaaaaaa
    32461 tctgcctatt tcagccgata cgccgatgaa ccaacggatt atccgtgctg cttttgaaga
    32521 taataacaac tatatgaaaa atggggtgtt attacgtcag gttatcaata tcattgatga
    32581 aattgatttt gcccattacc aagaacgaca cgcctttggc gatatttatg aaaatatcct
    32641 caaaagttta caaagtgcag gtaatgcagg ggaattttat acccctcgcg ctgtaaccga
    32701 ttttatggta caagcaatca aaccgaaact tggcgaacgc attgccgatt ttgcctgtgg
    32761 gacgggtggt tttttaactt cggcgttaaa ggtattggaa agtcaaattc aaaccctttc
    32821 tgaccgcact ttattcaata attctgtgta tggcattgag aaaaaagccc ttcctcacct
    32881 gctttgtatt accaatttat tgttgcacga tattgataat ccgaatgtac atcacgataa
    32941 tgctctagaa aaatcggtca aagattacac cgaaaatgat aaatttgatg tgattttgat
    33001 gaatccacct tacggaggtt cagaaattga gcaaattaaa aagaatttcc ctacggcttt
    33061 acagagcagt gaaaccgctg atctgtttat gtcggtaatt atgtaccgcc taaaacagaa
    33121 tggacgggct gcggtggtgc tgcctgacgg atttttgttc ggcacagata atgccaaagt
    33181 tgcgattaag aaaaagctat tagaagagtt taatctgcat acgattatcc gcttaccgca
    33241 tagtgtcttt gccccttata cctcgattac gactaatatt ctgttttttg ataaaaccga
    33301 gccaacccgt gaaacttggg tttatcgcct tgatatgcca cagggttata aaaatttctc
    33361 caaaactaaa ccgatgaaat tggaacattt caacgaagtt gttgaatggt ggggaaatcg
    33421 ccaagtgatt gaagtcgaag ggtttgacaa agcgaaaagt tttacattaa aggaaatgtc
    33481 cgaccgtcaa tacaacctcg atttatgtgg ctttcctcac gaagaagagg aaatccttcc
    33541 gcctgatgaa ctaattgcag attatcagcg aaaacgcacc gcttacaatg ctgatattga
    33601 taagattcta gcagaaatta ccgatatttt aggcattaaa ctgtaatagg agcataaaat
    33661 gctgacttgg gaacatatcg aaaaaatgat tgcacatcag caatttatcc gagaaaaggc
    33721 agaaattgaa tataaagagg caaaaaatag tgtgccaaaa gatctttggc atacttattc
    33781 ggcttttgca aacagcaatg gtggctttat tttattagga ataaaggaaa atgaacaagg
    33841 acattttcct gaactgctaa tttctggtgt taatgatcct gataaagtca ttgatgaatt
    33901 attttcccaa tctcgtagtg aaaaagtcag taaatcctta ttaaaggata atgatgtgaa
    33961 aatctttcaa gttgaaaata aaagcgtgat tgcaatttat gtgaaagcag ctgatatttt
    34021 agaccgtcct atccatttaa atggtgatta tcgactttct tatgttcgtt taaattcagg
    34081 cgatcataaa ctcacctcct ctgaactgcg ttctttcatt tcaagctata gccaaaaaga
    34141 tgctgatggg agaattgtgc cttatgcttc tattgatgat atcagtttaa gcacattgga
    34201 taaatacaga aatctgctga aagcccataa cagcacatca aaattactta cgttatccga
    34261 tgagaaattg ctgcaagaaa ttggggctta taaaaaagat ttagcacaga atagcgaggg
    34321 cattaccaat gcaggcttat tgatgtttgg taagcactat gccattacaa gcatatttcc
    34381 ccacttcttt tttgaatatt acgaagaagc tggtgatgta aaacgctata cattacggat
    34441 taccgatttt gatcttgaag aaggcaatct ctttgaattt tacttgaaaa ttgtgccact
    34501 tattcaagag cttggtaaag ataaacattt caaattagat aatttaaccc gtactgagga
    34561 aaatgaaatt actgacgggc tacgggaagc tctaatcaat gcaattactc acgcagatta
    34621 ctttaacaat gttcgccatc taaaagtcat taaaaccaaa gataacaaac tgatttttga
    34681 aaatgcagga gtaatgttgg ttgatattcc cacggctatt gcagggcaaa gatcggaatg
    34741 ccgtaattct attattcata acttattcca ccgtttaggg ctatgtgagc gacaaggaca
    34801 aggcgttcgg gatatttatt catattggca aagccgaaat ttcaattcac cgcttttaga
    34861 aagtgaaatt gattacacta aactcacctt aacttttcaa tcaggtatga ttgcagattt
    34921 tgaggaaaaa tttaccgctt gctttggcga aaatttctct gagttacagc ctattcaaaa
    34981 agattgctta ctctttatcg ccttcaatca aggtaaagca atgtttgcag aattagcaca
    35041 aaaactgccc caatatccac gcagaaatat tactttggca ctagcacgac tgaaagaaaa
    35101 aggcttacta accagttcgg ggagtccgag aaaacaactc tataccctag tgaatttaga
    35161 atggataatc acagagaaat cacaagatga ttattttaat ccacctttcg accaacttga
    35221 taaagctagt gagagtaagg gcgccccccc gaagaaaagc aaagtgaagc aagtcaaaca
    35281 attaccccag aacaaagcaa acaaattacc cccgaagtaa atcgcttact ttcagtgttg
    35341 cttgagccga tgaagagcaa agaaattatg aaaaaactca ggttaaaaga tgataagcat
    35401 ttccgtatgc agtatttaaa acctgcacta acgcttggtg tgatcgaaat gcaattccca
    35461 gaaaacccaa aacaccgtaa tcaaagatac tttaagaaat aacaaccgat tattgagaat
    35521 aaaaaatgaa agcccaacag ctaaaaaacg caatcctaca actagcaatc caaggcaagc
    35581 tcgttccaca agatccaaat gatgaaccgg caagcgaact cctttgcaaa atccaagcag
    35641 aaaaagaccg cttgattgca gaaggaaaga tcaaaaaaaa caaaaaaact gccgataaag
    35701 ccccttatac cattgaacca ccttttgaga ttcctgagag ttgggtgtgg gtgaggttgg
    35761 gggatatatg cctaaaaatt acagatggaa ctcatcattc tcccccaaat atcgataaga
    35821 gtgattttct ttatattaca gctaaaaata taaagaaaga tggattagat ttatcaaaaa
    35881 ttagctatgt aacaaaagaa attcataatg aaattttcag ccgttgtaat cctgaaaagg
    35941 gagatattct atatattaaa gatggagcca caactggagt aagtattata aatactctta
    36001 atgagccatt tagtatgtta tccagtgttg ccttaattaa gacctcacaa gaaatagata
    36061 atgagtactt aaattatgta atgaatagtc attattttta taacatttct attggaagta
    36121 tgtctggaac aggtattcca agaataacat taactaaatt agaatcttat ttagtcccag
    36181 ttccgccact cctagaacaa cagcgcattg tgcaaaaaat cgaggaatta ttaccgcttg
    36241 ttgaacgcta cgagcaaacc gaacagcaac tcactaaact caacaataca ttccccgaac
    36301 agctgaaaaa atcggtgtta cacgcagcta ttcagggtaa attaaccgag caagatccga
    36361 atgatgaact ggcatcttgc ctgattgagc ggataaaagc ggagaaaaat cgtcttattg
    36421 ccgagaaaaa actcaaaaaa ccaaaaagtg tttcagagat tgtaatgcgt gataatttac
    36481 cttatgagat caaagcaggt caggaacggt gtatcgccga tgaagtgcca tttgagattc
    36541 ctcaaaattg gacttgggtg aggttggggg aagtaggtga ttggagttca ggtgcaactc
    36601 caaaccgaca caatcctgaa tactataatg gtacgatccc gtggctaaaa acaggagact
    36661 taaacaacgg aataatttca tctatacctg aatttattac agataaagca ttgcaggaat
    36721 gttctgtaag attaaatcct gttggttcag ttttgatagc aatgtatgga gcgacaattg
    36781 gtaagcttgg gatattaaaa atagcagcaa caacaaatca ggcttgctgt gcgtgtattc
    36841 cttttaatgg aatttataat aaattcttat tttattattt gatgtcgcag aaagcagaat
    36901 ttcagaaaaa aagtgaggga agtgggcaac caaatatatc aaaggaaaaa attatcaatt
    36961 atttatttcc tttaccacca atccacgaac aacatcgcat tgttcaaaaa attgaacaat
    37021 tatttgcaga gattgaaaaa ttgtaggagt catcatcgct ttcttgggcg tgttggatac
    37081 gccctacagt cactaaatta ttgatctttt atcatatcgg ttttcaacca acctaaaagg
    37141 aaacctatat gatccatcta tttgaaaagc accttaatca atctaatctt gctgaaaata
    37201 cccaatcagc ttatcttttt gcggtaaaac aatatcacaa aaaatttgat cagttatcta
    37261 aaatcaattt acagcgat
//
LOCUS       DANLRW010000009        35813 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.009, whole genome shotgun sequence.
ACCESSION   DANLRW010000009 DANLRW010000000
VERSION     DANLRW010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 35813)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35813)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35813
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.009"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            16..1329
                     /gene="pilQ"
                     /locus_tag="PXA71_000375"
     CDS             16..1329
                     /gene="pilQ"
                     /locus_tag="PXA71_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus secretin PilQ"
                     /protein_id="HDL5104524.1"
                     /translation="MWRIFIYFLCGFSLAYANTISIVLKNAPTSLIFTYLAEETGKNM
                     VLDDNIETKSTLRLENKSVDEIFKTLGKVNKLSLTQEDDIVYIHKKEEKAADLTPLPI
                     MNLQNNGQNTPLVTAPKLITKTLKLHYAKASEVIESLTKGSGTFLSENGYIHFDERSN
                     SLIVKDSAKSLKNIENLVKQLDQPTEQIAIEARIVTISSEHLQELGVRWGIFSRGAGH
                     YKFGGRLEGNGLNNVTNNLNVNFPITGGASAVLQVSSINSRVLDLELSALEQENSVEI
                     IASPRLLTTNKKPASIKQGTEIPYVMYNTKSEATDVEFKEAVLGLEVVPHLSTQNQIL
                     LDLIVTQNSPNSQSGSSGLITIDKQELNTQVFAKHGETIVLGGIFQHLTQKGEDKVPI
                     LGSIPFIKRLFSQTRDKISKRELVIFVTPYILQSNEKSSNRKKSK"
     gene            1410..1823
                     /gene="nusB"
                     /locus_tag="PXA71_000376"
     CDS             1410..1823
                     /gene="nusB"
                     /locus_tag="PXA71_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDL5104525.1"
                     /translation="MKISPRRRARECAVQAIYSWYISQNTVEEVELAFVTDQDMKGVD
                     MPYFRKLFRGVVDNVEAIDEALRPYLDRKESDVDPIERSILRLSTYELKFEHDVPFRV
                     VINEGIEVAKVFGSDDSHKYINGILDKLAPALGRK"
     gene            1886..2866
                     /gene="thiL"
                     /locus_tag="PXA71_000377"
     CDS             1886..2866
                     /gene="thiL"
                     /locus_tag="PXA71_000377"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HDL5104526.1"
                     /translation="MGEFDIIERYFNASQRPPRKDVLLSIGDDCALTSLKPNQQLAIT
                     TDTLVCGTHFLPTISPADLAYKSVASNLSDLAAMGAEPAWISLALTLPEINHDWLAEF
                     SEHFFEILDHYNVDLIGGDTTCGPLSLTITAQGIVPQDRGLFRHNAKVGDWIYVSGTL
                     GDSAGGLQLLLNQQSEQVNWNKEQSYLIQRHLRPTPRVLLGLTIASIANAAIDISDGL
                     LSDLSHILKRSDCGAVLNLENFPLSDVLLSCYSRTEAEYFALNGGEDYELCFTVPNDN
                     KAKLDKALANIGVTYTCIGQIRSAKEGLTLLRHNQPVTLPSQRGYDHFKK"
     gene            2871..3344
                     /locus_tag="PXA71_000378"
     CDS             2871..3344
                     /locus_tag="PXA71_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HDL5104527.1"
                     /translation="MKPINLKNPIHFFAFGFGSGLLKPAPGTWGSLAGLIVAIALWSI
                     TQSALFFGLLTLVSFIAGCVICTKASQDLEVHDDGRIVWDEIVAIFLMFTCLPEYNLL
                     GYLLAFISFRIFDILKPFPIRYFDEKLESGLGIMFDDILAAIFALISLHLLYYFI"
     gene            3351..3974
                     /locus_tag="PXA71_000379"
     CDS             3351..3974
                     /locus_tag="PXA71_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HDL5104528.1"
                     /translation="MLTILFIHFAGLISPGPDFFYVVRQSASHSVKSGVLAATGISIG
                     IIFWAAFAIFGLAWLSNSIGSLFQYAIMIIGGCYLVYIGSQMVRVTENIIFVENKAQL
                     TPLNPWQEIKKGLLINIFNAKAGVYFTSVISAYVDNLSNTLQMFELLLLFVVSTFIYF
                     CVVALLFSRRPVRLFYAKYSRYIDNISGVIFILFGSMLIYEGFSHFI"
     gene            4086..4691
                     /gene="ruvA"
                     /locus_tag="PXA71_000380"
     CDS             4086..4691
                     /gene="ruvA"
                     /locus_tag="PXA71_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005686751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDL5104529.1"
                     /translation="MIGRLHGKIIEKQPPEILLDVQGVGYELLLPMTSFYSLPQIGEE
                     ATIFTHLVVREDAHLLFGFAQKQDRTLFRELIKTNGVGPKLALAILSAMSVSQFATAI
                     ENEELAKLTKIPGIGRKTAERLLVELKGKFKGMAQSDFFVEVSHEQIVASNTPDPANE
                     ALDALIALGYKPADAEKMIKKVNKSGATSEQLIREALKNSL"
     gene            4828..5832
                     /gene="ruvB"
                     /locus_tag="PXA71_000381"
     CDS             4828..5832
                     /gene="ruvB"
                     /locus_tag="PXA71_000381"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDL5104530.1"
                     /translation="MIEADRIISASPKREEEVIDRAIRPKLLADYVGQPSVHDQMEIF
                     IKAAKLREEALDHLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAAMLT
                     NLEPYDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
                     TTRAGSLTSPLRDRFGIVQRLEFYSVDDLTLIVKRSADCLNLNLSADGAYEVARRSRG
                     TPRIANRLLRRVRDYADVRNNGIITSDIAKQALAMLDVDSEGFDFMDIKLLQAIVERF
                     DGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIATSRTYAHLGITQID
                     "
     gene            complement(5931..6614)
                     /gene="artM"
                     /locus_tag="PXA71_000382"
     CDS             complement(5931..6614)
                     /gene="artM"
                     /locus_tag="PXA71_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HDL5104531.1"
                     /translation="MWWDYLVEISQGIGTSLQLTFVALIIAFILAIILTFILSLENRP
                     LKWLVNGFITLFTGTPLLIQFFLIYSGPGQFEWITESAAWVLLSDAWFCAMLALALNS
                     AAYSTLLFHGAVKAIPKGQWETCAALGLSRLDTLKILVPYALKRALPSYSNEIVLVFK
                     GTSLASTITIMDIMGYARQLYGTEYDALSIYGMAGVIYLVITGIMTIVLRKLESRVLA
                     FERFETEKA"
     gene            complement(6614..7285)
                     /gene="artQ"
                     /locus_tag="PXA71_000383"
     CDS             complement(6614..7285)
                     /gene="artQ"
                     /locus_tag="PXA71_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HDL5104532.1"
                     /translation="MSSDILNLLVNATLMTLGIALASLLIGMLLSIFFVVLETSKIAC
                     IRKPTSIIITLLRGLPEILVVFLIYFGLIQVIFLITDEFAELNAFWCGAIALGIIFAA
                     YASQSLRGAIKAIPVGQWESGTALGLSRAQVFVRIILPQVWRHALPGLSNQWLVLLKD
                     TALVSLIGVDDLMRQSELINANTHQPFTWYGIAALIYLAITLISQRVIKVLEGRFTRF
                     ERGVA"
     gene            complement(7285..8010)
                     /locus_tag="PXA71_000384"
     CDS             complement(7285..8010)
                     /locus_tag="PXA71_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HDL5104533.1"
                     /translation="MKKLLLASAIAFATLSANAQETITFAMEPSYAPFETTNEKGEVI
                     GFDVDIAKALCEELKATCEFKTQSFDSLIAGLKFKNFDAIISGMDITEARQKQVAFTN
                     AYLENSVSYVAMKGKFTPETAKNVGVQNGTTFQQYLSKNAKQYNLKPYASLQSAVLDL
                     KNGRVDMVFGDTPVLAEWLKTEKELDFVGEKVVDKAFFGNGYGIAVNKSNTALLEKLN
                     SALATIKTNGKYEQIYNTWMAGK"
     gene            complement(8036..8770)
                     /gene="artP"
                     /locus_tag="PXA71_000385"
     CDS             complement(8036..8770)
                     /gene="artP"
                     /locus_tag="PXA71_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HDL5104534.1"
                     /translation="MAIRIQNVNFFYGSNQALFDINLEIEKGDTVVLLGPSGAGKSTL
                     IRTLNLMEVPQSGTLAIANHQFDLTAKTDSKAVSLLRREVGMVFQQYHLWPHLTVMQN
                     LIEAPMKVLGLSKEEAVARAKGHLARLRLSEFAERFPLHLSGGQQQRVAIARALMMQP
                     QVLLFDEPTAALDPEITAQVVDIIKELQSTGITQVIVTHEVGVARKVASKVVYMEKGT
                     IIEQGDASCFESPKTEQFAQYLSHSE"
     gene            8978..10741
                     /locus_tag="PXA71_000386"
     CDS             8978..10741
                     /locus_tag="PXA71_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HDL5104535.1"
                     /translation="MIRYFFSLVLSLLMINSSHANLFSQPKFLKSEEAFVFSIQNENE
                     TLQLNWDIADNYYLYKKEIRVTPQNIEIGDITFPAAEQYNDEFFGQVEIYRNHLGLKV
                     PFKEIKDNASIVVEYQGCTKGFCYPPERVELKLDSILSATPEELAQLEAQAVEKSENF
                     AKTDNMAPPENVAKAEQDQLAENLANNRFSIFWFFVLGVGLAFTPCVLPMLPLLSAIV
                     IGNKQRPSTAKALLLSIAYVQGMAVTYTLLGLIVAAIGLPFQIALQSPPVLIGLSIVF
                     ILLACSMFGLYEIQLPNSWQQKLNAMSQKQQGGALGSVFLMGMIAGLIASPCTSAPLS
                     GALLYVAQSGDLVTGGLALYLLALGMGLPLILITLFGNKILPKSGEWLLKVKAAFGFV
                     MLALPVFLLSRVLPSHYEPFLWSALAVAFLIWLVDAIPSNSITKKIIKVLLLLALAIA
                     AKPWADLAWNGSTTQQQTTPHLALEKIQSLADLETKLTASKGKKVMLDLYADWCVACK
                     EFEKYTFSDQNVQNKLNEMVVLQIDMTKNSAENIELMKHFNVLGLPTILFFDENGNEM
                     SQSRVTGFLDAEQFLAWLNKL"
     gene            10751..11320
                     /locus_tag="PXA71_000387"
     CDS             10751..11320
                     /locus_tag="PXA71_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HDL5104536.1"
                     /translation="MNQENHKIEDIIRIFNQCFSDEYNTRLERGGNYPIYLPEFMDED
                     GVPSERPYNVILFAHGYYSSALHEIAHWLVAGEARRKLEDFGYWYEPDGRSAERQREF
                     ESAEIKPQAIEWVLATAAGFRYFASADNLSGNPGDNSAFKQAVYDQVKLYAERGYLPK
                     RAETLRKALCAFYGTPDVIDLAQFDIERI"
     gene            11546..13324
                     /locus_tag="PXA71_000388"
     CDS             11546..13324
                     /locus_tag="PXA71_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid--CoA ligase"
                     /protein_id="HDL5104537.1"
                     /translation="MSTLDFHFIHRFHQQVQALSHHPALRFMQDEKWSEISWLELQKQ
                     VNNLSYALLANGLAVQEKIAIFAQNMPRWTITDIAAMQIRAVAVPIYATSTTKQLEYI
                     LNDGDIKILFVGDQEQYDQAIEIANNCSLLIKIVAMKDSIDLRDFPIAQHWQDFIKVN
                     QDEAELTKRLNDKCLEDLFTLIYTSGTTGEPKGVMLDYANLAHQLQAHNKALPHIDEN
                     DISLSFLPLSHIFERAWVTYVLYRGAVNCYLEDPQQVRQALSTVRPTLMCAVPRFYEK
                     IYTAVWDKVQQAPIHRRALFKWAIRTAEDNLFGKKSAFFHRLQYIMADKLVLGKLRAL
                     LGGRIRMMPCGGAKLDPSIGLFFQSIGINVKLGYGMTETTATISCWQEKGFNINSTGT
                     LMPDVEVKISEENEILVRGGLVMKGYYKKPEATAQAFTAEGFLKTGDAGELDSEGNLY
                     ITDRIKELMKTSNGKYIAPQYIEGKIGKDKFIEQIAVIADAKKYVSALIVPCFDSLEE
                     YAKKLNIRYQDRLELIKHYEVVRMFEQRINELQKDLASFEQIKKFTLLSQAFSTKMEE
                     ITPTLKLRRKVILERYKQQIEKMYES"
     gene            complement(13357..13701)
                     /locus_tag="PXA71_000389"
     CDS             complement(13357..13701)
                     /locus_tag="PXA71_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL5104538.1"
                     /translation="MIQRFEVGSRFSEMAIHNGVAYLAGQVPLDDTADAYTQTQQVLA
                     EIDKWLAKANSDKSKILMATVYLKEMADYAEMNRAWDEWVAPNNAPPRAAVEAKLANP
                     NWKVEIVVTAAV"
     gene            complement(13710..14258)
                     /locus_tag="PXA71_000390"
     CDS             complement(13710..14258)
                     /locus_tag="PXA71_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HDL5104539.1"
                     /translation="MAKLFANSTACLYLENMKKLIFLGLSALALAGCSSTISNPNQLI
                     GQWQCTIEYDDFNIRTVDNLRFSTNGTMTNQGGIYYPIQKSIFEYSLQQNGRWSVKNG
                     AIVYRIVSESVQRSHRSQIWSELQRDAELQQFEENLFSSLSDSDNNKTVELIITDFDE
                     KEMDIKQEIKGHKAYKGQCIKQ"
     gene            complement(14285..15322)
                     /locus_tag="PXA71_000391"
     CDS             complement(14285..15322)
                     /locus_tag="PXA71_000391"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HDL5104540.1"
                     /translation="MALKELDWANLGFSYIKTDYRFIAHWKDGKWNEGELTQDNTLHI
                     HEGSTALHYGQQCFEGLKAYRCKDGSINLFRPDQNAERMQRTADRLLMPRVPTELFIR
                     ACKKVVKANQDWLGPYGSGATLYLRPFLIGVGENIGVKAAPEFIFSVFCCPVGAYFKG
                     GLAPSNFITTDYDRAAPMGTGGVKVGGNYAASLLPHELAVEQSSTTRKFADAIYLDPK
                     THTKIEEVGAANFFGITKDNKFITPISESILPSITKYSLLHLAQERLGMEAIEGDVYI
                     DQLDQFAEAGACGTAAVITPVGGIQHKDKFHVFYSETEVGPVTRRLYAELTGIQFGDV
                     EAPQGWIVKVE"
     gene            complement(15464..15790)
                     /gene="grxD"
                     /locus_tag="PXA71_000392"
     CDS             complement(15464..15790)
                     /gene="grxD"
                     /locus_tag="PXA71_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005705415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Grx4 family monothiol glutaredoxin"
                     /protein_id="HDL5104541.1"
                     /translation="METIDKIKQQISENPILLYMKGSPKFPSCGFSARAVEAVINCQV
                     PFGYVDILTNPDIRAELPKFANWPTFPQLWVEGELVGGCDIVLEMLQKGELQTLLKET
                     AAKHAA"
     gene            complement(15862..16467)
                     /gene="recR"
                     /locus_tag="PXA71_000393"
     CDS             complement(15862..16467)
                     /gene="recR"
                     /locus_tag="PXA71_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDL5104542.1"
                     /translation="MQTSPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGVALS
                     KALNEAMSHIGHCKSCRTFTEEEECTICKNPRRQMSGQLCVVEMPEDIQAIEQTGQFS
                     GRYFVLMGHLSPIDGIGPREIGLDLLQQRLEQESFHEVILATNPTIEGDATANYIAEM
                     CRMYNVKATRIAHGVPVGGSLEMVDGTTLSHSFAGRRDIDI"
     gene            complement(16475..16804)
                     /locus_tag="PXA71_000394"
     CDS             complement(16475..16804)
                     /locus_tag="PXA71_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDL5104543.1"
                     /translation="MFGKGGLGGLMKQAQQMQERMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRIEIDPSLMEDDKEMVEDLVAAAFNDAVRRAEEMQKEKMASVTAGMQLP
                     PGMKFPF"
     gene            16944..18029
                     /gene="recF"
                     /locus_tag="PXA71_000395"
     CDS             16944..18029
                     /gene="recF"
                     /locus_tag="PXA71_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HDL5104544.1"
                     /translation="MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIF
                     YLGHGRSFKSHISNRIIHYDKDDFVLHGKIDEAKHSWSVGIQKFRSGETTLKINGEDG
                     NKIADLAHLLPMQVITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQ
                     RNSALQQVRSYQELKAWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQFFLPEIEIGL
                     SFHQGWEKGADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVLSRGQLKL
                     LMCALRLAQGEHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ
                     DQLNQMQWQDRSDDCLFTVKNGEIQPQ"
     gene            complement(18220..19341)
                     /gene="tyrA"
                     /locus_tag="PXA71_000396"
     CDS             complement(18220..19341)
                     /gene="tyrA"
                     /locus_tag="PXA71_000396"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HDL5104545.1"
                     /translation="MNPLAPLREQIDQVDQQLIALLSERLALVAEVGKVKSEHGIPVY
                     APERETAMISARRSEAEKQGIPADLIEDVLRRIMRESYANENKHGFKRVNSDIQKIVI
                     VGGKGKLGGLFGNYLTLSGYNVEALGRDDWDNAEQILANADVVIVCVPIANTLATIER
                     LQSYLTENMILADLTSVKHQPLQKMLEVHNGAVVGLHPMFGPDIASQAKQVVACCHGR
                     FPERYQWLLEQIKIWGAKIEEIEAAAHDNAMTYIQALRHFSTFAFGLHLSRQPVQLSQ
                     LLALSSPIYRLELAMIGRLFAQDGSLYADIIADKPENLATIETLKESFEQGLDFFKRN
                     DKAGFIKAFEEVHHWFGDYSEQFLKESRVLLQQAHDSRK"
     gene            complement(19396..20454)
                     /locus_tag="PXA71_000397"
     CDS             complement(19396..20454)
                     /locus_tag="PXA71_000397"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HDL5104546.1"
                     /translation="MNTVFNQDSVHNVNIQDEKVLLTPQELKQEFPLPEHLRNQIERS
                     RKTISDIIHRRDKRQLIVIGPCSIHDPVAALEYGKKLKALSEQVSDKLYIVMRVYFEK
                     PRTTVGWKGLINDPKMDGSFDVETGLRIARKLCLDLAELGLPLATEALDPMTPQYLAD
                     LFSWSAIGARTTESQTHRELASGLSMAVGFKNGTDGDLAVALNAMQSSAQSHSFIGIN
                     QQGQVTLLKTKGNADGHIILRGGKTPNYEKQYVDDCEWVLKQANLPTAIMIDCSHGNS
                     NKDYRRQPLVAENVLEQLLAGNTSIIGLMIESNLHAGNQSSELPFEQMKYGVSITDAC
                     IDWQTTEELLTHFAEKLR"
     gene            complement(20494..21531)
                     /locus_tag="PXA71_000398"
     CDS             complement(20494..21531)
                     /locus_tag="PXA71_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5104547.1"
                     /translation="MHNKLLSICILRLSAIGDVCHTLAVIQAIQRKYPSAEITWIIGK
                     TEAYLMKDIPNVHLIPYDKKIGWKGIFTLWQKLSHKRFDFLLNLQTAFRASILSLGIK
                     AKKKIGFNQDRAREMQWLFTNQKVEMTDSPHVLDGQMMFAKAIGIMDLSAQWNLPVSD
                     EDLAYGKQFIDFTRKNILIAPCSSKKEKDWLPERYAEIANWLSKQNINVLIAGSPSQY
                     EMETAAKIQQLAPNCTSIAGKTTLKQLAGVIRQVDLVISSDSGPAHIATTQNTPVIGL
                     YAIHNPRRTGPYNDLDKVVSVYDEAILQSYGKPWQQLAWATKAKGKNWMEKITVESVK
                     QKVVETLKITL"
     gene            complement(21627..23066)
                     /gene="pyk"
                     /locus_tag="PXA71_000399"
     CDS             complement(21627..23066)
                     /gene="pyk"
                     /locus_tag="PXA71_000399"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL5104548.1"
                     /translation="MSRKLRRTKIVCTMGPATDRGNTLEKIIAAGANMVRMNFSHGIP
                     EDHIERANKVREIAARLGRHVAILGDLQGPKIRVSTFKDGKIFLNIGDKFTLDADLPR
                     GEGHQEAVGLDYKNLPNDVVPGDILLLDDGNVQLKVLEVEGVKVHTEVTVGGPLSNNK
                     GINKLGGGLSAPALTDKDKEDIKLAAKIGVDYLAVSFPQSSADLHYARELAKEAGLEA
                     KIVAKVERAETVATEEAMDDIILGADVVMVARGDLGVEIGDAALVGVQKRLIRRARKL
                     NRVVITATQMMESMIKKPMPTRAEVMDVANAVLDGTDAVMLSGETANGDYPVETVKSM
                     AEVCLGAETMPSINISRHRMEGTFKSIEEAVAMSAMYTANHLEGVSAIISLTHSGETA
                     KLTSRISSGLPIYAMSRNQKALNLCALYRGVTPVYYNEDSRTMEGAKKAIAQLKEQGY
                     LLTGELVLLTHGDELKAGGTNTCRILRVE"
     gene            23193..23681
                     /gene="sixA"
                     /locus_tag="PXA71_000400"
     CDS             23193..23681
                     /gene="sixA"
                     /locus_tag="PXA71_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HDL5104549.1"
                     /translation="MNIWIMRHGEAGFNASSDAARCLTDNGIKNTISQGKWLGEHLAN
                     QQIQLDKILVSPYLRAQQTLENVLIGMQAVNFPQHFTNLIESWDEVTPDGNPHTVESY
                     LHFLREEGAKNILLISHLPLVFDLVQILTNNQSNVQFPTSTIAEINWVKTKAELIRVK
                     HT"
     gene            23905..24894
                     /gene="dusB"
                     /locus_tag="PXA71_000401"
     CDS             23905..24894
                     /gene="dusB"
                     /locus_tag="PXA71_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HDL5104550.1"
                     /translation="MQIGQYAIKNRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMST
                     NPDVWHTEKSRLRLAHHDEIGLNAVQIAGSDPVEMAKAAKINVEYGADIIDINMGCPA
                     KKVNKNMAGSALLRNPKLVAQILDSVVNAVDVPVTLKIRTGWDQENRNCLQIAKIAEQ
                     AGIKALTIHGRTRSCLFNGEAEYESIKAVKEAISIPVIANGDIDSAEKAKFVLDYTKA
                     DAIMIGRASFGNPWIFKEINDFFETGLSSPLSIDKKYQLMFKHIEDLHQFYGEEKGYR
                     IARKHVGWYTEKLNPESNFKRTFNTLSSTKEQLYALEDFVKSIHLESQLRKVG"
     gene            24899..25195
                     /gene="fis"
                     /locus_tag="PXA71_000402"
     CDS             24899..25195
                     /gene="fis"
                     /locus_tag="PXA71_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HDL5104551.1"
                     /translation="MLEQQPTQNPLTVTMLNAQAQQVNKPLRDNVKAALKNYLSQLNG
                     EDPTELYELVLSEIEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG"
     gene            complement(25300..28086)
                     /locus_tag="PXA71_000403"
     CDS             complement(25300..28086)
                     /locus_tag="PXA71_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoferrin/transferrin family TonB-dependent
                     receptor"
                     /protein_id="HDL5104552.1"
                     /translation="MKYHHFRYSPVALTVLFALSHSYGAATENKKIEENNDLAVLDEV
                     IVTESHYAHERQNEVTGLGKVVKNYHEMSKNQILGIRDLTRYDPGISVVEQGRGASSG
                     YAIRGVDKNRVSLLVDGLPQAQHYHTLGSDANGGAINEIEYENIRSIELSKGASSAEY
                     GSGALGGAIGFRTKDAQDIIKEGQHWGLDSKTSYASKNSHFLQSIAAAGEAGGFEALV
                     IATHRHGKETKIHSEANKLKHNIRRITGFENRYDLYPNSAQNAPGGSFFIVEDTCPTL
                     DCTPRARVKLNRDNFPVRTFPEYTPEERKQLEQIPYRTEQLSAQEYTGKDRIAPNPLD
                     YKSNSVFMKFGYHFNSSHYLGAILEDTKQRYDIRDMQTPAYYTKDDINLSLRNYVYEG
                     DNILDGLVFKPRIPYGLRYSHVKFFDERHHKRRLGFTYKYKPENNRWLDSIKLSADKQ
                     DIELYSRLHRLHCSDYPVVDKNCRPTLDKSWSMYRTERNNYQEKHRVIHLEFDKALNA
                     GQGVFKQTHKLNLGLGFDRFNSLMDHGDMTAQYTKGGYTSYRGRGRLDNPYIYRRDPR
                     SIETVSLCNNTRGDILNCEPRKIKGDSHFVSFRDLVISEYVDLGLGVRFDQHRFKSDD
                     PWTLSRTYRNWSWNGGITLKPTEFVSLSYRISNGFRVPAFYELYGKRDHIGLKDNEYV
                     QRAQRSHQLEPEKSTNHEIGVSFKGQFGYLDVSYFRNNYKNMIATACKRIIQKSHCFY
                     NYHNIQDVALNGINLVAKFDLHGILSMLPDGFYSSVAYNRVKVKERKLTDSRLDSVND
                     PILDAIQPARYVLGFGYDHPEEKWGIGITTTYSKAKNADEVAGTRHHGIHRVDLGGKL
                     TGSWYTHDITGYINYKNYTLRGGIYNVTNRKYSTWESVRQSGVNAVNQDRGSNYTRFA
                     APGRNFSLAFEMKF"
     gene            complement(28180..29931)
                     /locus_tag="PXA71_000404"
     CDS             complement(28180..29931)
                     /locus_tag="PXA71_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5104553.1"
                     /translation="MFKLKSSFVLLNAALLAACSSNGGSFDVQSAKVESQTQTTPKKP
                     SLQDDNSNARRTVSASETEALLQPGFGFSAKIPRRNLFPQGKEDVAPIGDIKEITGDL
                     TKIPYEEEVKAYGSSADGFSHTHDRNHKLYTRDFNFVRSGYVLHSGAKPEIKPKEILR
                     TGAHGYVYYLGIEPAKAIPTQKATYKGYWDFTTDARKGRDSKYFSNSAGINIGATPEN
                     SYDINVDDSEKPMGHTGEFTADFANKTLTGTLVRNGYVSRSKEQKITTIYDIDAKIKG
                     NRFSGKANAKNTDDPYFGKSSTTLEGGFFGGKAQELAGKFLADDKSVFVVFAGKRDAK
                     KDDSESAFDAFKIKLKDLNKSEMDTFGNATHLIINNKQIPLIAEGKKSFAEMKFDDLV
                     TRTIDDKTYRVSVCCNNLDYVKFGTYSEGNNSDTAHQYLVGERTAVADLPTGTVKYRG
                     TWDGVMYSKSGSAGAESPSNSESGTRSLFDVDFVNKKINGKLIANDGVEERPMLTLEG
                     NLKGNGFAGTAKTGNSGFNLDPKSTNGGTVVHINTQFEGGFYGPKATELGGIVHSAET
                     DKDRVSITFGGKRQIEK"
     gene            complement(30352..30999)
                     /gene="rnt"
                     /locus_tag="PXA71_000405"
     CDS             complement(30352..30999)
                     /gene="rnt"
                     /locus_tag="PXA71_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010130043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HDL5104554.1"
                     /translation="MEQTTEQIDYKLLKHRFRGYLPVVIDVETAGLNAQTDALLELAA
                     ITLKMDEQGYLVPDQQCHFHIAPFEGANINPESLKFNGIDIDNPLRGAVAENIAIPEM
                     FKMVRKAMKEQGCQRAVIVAHNAAFDQGFLQAAIKRINAKRDPFHPFAMFDTATLAGF
                     MYGQTVLVKACQVAKIPFDGKQAHSALYDTERTAELFCAMVNRLKDLGGFPPLSD"
     gene            complement(31084..31491)
                     /gene="gloA"
                     /locus_tag="PXA71_000406"
     CDS             complement(31084..31491)
                     /gene="gloA"
                     /locus_tag="PXA71_000406"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HDL5104555.1"
                     /translation="MRILHTMLRVGDLERSIKFYTDVLGMRLLRRSENEQYKYSLAFL
                     GYADESESAVIELTYNWGVDKYELGTAYGHIALGVDDIYKTIEDVRAAGGKITREPGP
                     VLGGTTVIAFAEDPDGYKIEFIENKDAKAALGN"
     gene            31581..32396
                     /locus_tag="PXA71_000407"
     CDS             31581..32396
                     /locus_tag="PXA71_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104556.1"
                     /translation="MAHDHDSPSKLEISTHAALPMVLMLFIEMALNFYSAPKNSIFIS
                     PYLLAFFVTSLISFLVLWKGEICRGQASRLSFILPFLLIFAVGNFLYSIGFTPKHNPM
                     AVASIAAVFACLIYFRLPEDQTLYNTLMYCGLAISSIGIIQYLAIYWFELPSLFNGIR
                     ANNFAQVLLGILLAGWYLMLAKSRLDVFLKLLVKTALVVLILNYCWTAFVLYQHLQIM
                     PDMPLLSFIIYFAAQFVILLMLAWLLLGKNIKNPTAWTVATLLAILYPFANVV"
     gene            32400..33146
                     /locus_tag="PXA71_000408"
     CDS             32400..33146
                     /locus_tag="PXA71_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104557.1"
                     /translation="MKRALKFFGIATVLSVVAIYYFLMPSHYLATPINWILPKAWKVQ
                     LPQGLNLNWQGSSLAQFQLSYRDCPLLSADKTDLGWIEKNHLSVDKLDIDYRCLALFP
                     QNEHSNSDTSLNALLAVIPDGEATIHALNWKNLPTDFNPRLQRLFEQTAIKLSLSKGE
                     IQATAAQQAVKFAANFANGRLNADLSYQPNEKEQHNLRISAEIEDNFTQLPPTISAEY
                     DWQLSYEIIANKALQKGALFSVGKKMPHKS"
     gene            33332..35107
                     /locus_tag="PXA71_000409"
     CDS             33332..35107
                     /locus_tag="PXA71_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH domain-containing protein"
                     /protein_id="HDL5104558.1"
                     /translation="MPLKTAIRISLLSQNSWGKGNIVISNSDGEITEKGLNLPLRLTG
                     NIKHGNFILYSSVPLDFQGNFDDLSVKFLPSSLLRLTGKERYLTIEDLRFPLAGIKID
                     KHGIHGRLHAILRGQSPDFNNIEFHLDGQAQNFKAGALDFFQDPKDANAVKDSWKWRI
                     WGASILKAFNSKVNLSGRGQWHKQLVRLEELKGDLATVKLADTTISKITLNNTQAIRF
                     NVKKFTLDGAVMLQSPEIAFSYGGVLPKPRVNLAFDGEVEKLRFKGAVNTTELGPLKL
                     FARRQLSQDASQIIGKLYWPEQSAQGFQPLFPFRSQWVINNGTIRGETAFSAGSKNGL
                     IAGGHLAIRNGGLSLPNGEAKGIEFSLPYRYQNGRFHFGAKKPLDVKIAQIKLGDLAL
                     DNASMKLNGYYPYTKAKPLNLNQLSFDLFGGKLNVKRFALPQTELAYLNLERIDFEQI
                     LQFMQYQQIDLKGKANAILPFWLSGKPCYICDGLLTQAETSYLTFTPELLSEMQKSGY
                     TEQILLHLVDKSTINDFRSLINVGPKGDLVLDGKLKLSSNQNKSKVNLNYNHRENLFD
                     LWHLINYGSQFEQKLENYLYQKLER"
     gene            35125..35319
                     /locus_tag="PXA71_000410"
     CDS             35125..35319
                     /locus_tag="PXA71_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HDL5104559.1"
                     /translation="MKPATFYFAIFLLNLTACTPKVQLETPSEGITINMNVVVDHRID
                     VKMDEKSRAVITKSENKTKN"
     gene            complement(35316..35789)
                     /gene="folK"
                     /locus_tag="PXA71_000411"
     CDS             complement(35316..35789)
                     /gene="folK"
                     /locus_tag="PXA71_000411"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDL5104560.1"
                     /translation="MQTVYIALGSNLENPLEQLKQAVEKLKKFANEFEISPFYGSKPV
                     GPQDQPDYVNAVAKFSTDLSPTALLDKLQSIENEQGRVRVRRWGERTLDLDIILYGNQ
                     QIQTERLNVPHIEMKNREFVIVPMFDLTPDLVLPTGEKLADIYAQFKDHQMIIFS"
BASE COUNT        10628 a         7648 c         6773 g        10764 t
ORIGIN      
        1 attatagagg ttgatatgtg gcgaattttt atatatttct tatgcggttt ttcattagcc
       61 tatgcgaata ccatttccat agttttaaaa aatgctccaa cttcgcttat ttttacttat
      121 ttagcggaag aaaccggtaa aaatatggtg cttgatgata atattgaaac caaatcaaca
      181 ctacgattag aaaataaatc ggttgacgag atttttaaaa cgcttggcaa agtcaataaa
      241 ttatccttaa cgcaagaaga tgatattgtt tatattcaca aaaaagagga aaaagcggct
      301 gacttaacgc ctctgccaat aatgaatttg caaaataatg ggcaaaatac accgcttgtc
      361 accgccccta agttaatcac aaaaaccttg aaactacatt atgcaaaggc ttcagaggtg
      421 attgagtcgt taaccaaagg cagcggaacg tttttatcgg aaaacggtta tattcacttt
      481 gatgaaagaa gcaatagcct gattgtgaaa gacagtgcaa aatcgcttaa aaatatcgag
      541 aatttagtaa aacagctcga ccaacccacc gagcaaattg cgattgaggc tagaattgtc
      601 actatcagta gcgagcattt gcaagagctt ggcgttcgct ggggaatttt ttctcgtggg
      661 gctgggcact ataaatttgg cggacggctg gaaggcaatg gactcaacaa tgtcaccaat
      721 aacttaaatg taaattttcc gattactggt ggagcatctg ccgtattaca ggtttcgtcc
      781 attaatagca gagtgcttga tttagaatta agtgcattag aacaagaaaa tagtgtggaa
      841 attattgcca gcccacgcct gttaaccacc aataaaaagc cggcaagtat caagcaaggc
      901 acggaaattc cttatgtgat gtacaacacc aaatcggaag ccaccgatgt cgaatttaaa
      961 gaagcggtat tagggcttga agtcgttcca cacctttcaa cccaaaatca aattctactc
     1021 gatctgatcg ttacccaaaa ttcgccaaat tcccaatccg gcagtagtgg cttaattacg
     1081 attgataaac aagagctaaa tacgcaagta tttgccaaac acggcgaaac cattgtactt
     1141 ggtggtattt ttcaacattt aacccaaaaa ggcgaagata aagtgccgat tttaggctca
     1201 attcccttca tcaagcggtt atttagtcaa actcgagata aaatcagcaa aagagagcta
     1261 gtcatttttg tgacgcctta tatccttcaa tctaatgaaa agagcagcaa ccgcaaaaaa
     1321 tcaaaatagc acatcataaa cgcaagcaaa aataggggaa gtgtgataga atcagccgtc
     1381 attttttgag ttaaagattt agaggtttta tgaaaatttc cccacgtcgc cgtgcaagag
     1441 aatgtgcggt gcaagccatt tattcttggt atatttccca aaacacggtt gaagaagtgg
     1501 aattggcgtt tgtgaccgat caagatatga aaggcgttga tatgccttat ttccgtaaac
     1561 ttttccgtgg cgttgtggat aatgtagaag ccattgatga agcattacgc ccttatttag
     1621 atcgtaaaga gtcagatgtt gatcctattg aacgttctat tttgcgttta tcaacttacg
     1681 aattaaaatt tgaacacgat gtgcctttcc gtgtagtcat caatgaaggg attgaagtcg
     1741 ctaaagtgtt cggctctgat gacagccaca aatacattaa cggcatttta gataaattag
     1801 ccccagcatt aggcagaaaa taataagatt ccccaattta tacataaatt ggggattttg
     1861 attataacgc tcaaggagat tttttatggg tgaatttgat attatcgaac gctattttaa
     1921 tgcttctcaa cgcccacctc gcaaagatgt tttactttct atcggcgatg actgtgcgct
     1981 cacatcactc aaaccaaatc agcaacttgc gatcacaacc gatacccttg tttgcggcac
     2041 tcattttcta ccgactattt cacctgccga tctcgcttat aaaagtgtgg cgtccaattt
     2101 aagcgatctt gccgcaatgg gtgcagaacc tgcatggatc tctttagcct taaccttacc
     2161 tgaaattaat cacgattggc tagctgaatt tagtgaacat ttctttgaga ttcttgatca
     2221 ctataatgtt gatttgattg gaggggatac tacttgtgga ccactatctt tgacaatcac
     2281 agctcaaggg attgtgccac aagatagagg cttattccgc cataatgcta aagtaggcga
     2341 ttggatctat gtttccggca cactcggtga cagtgcaggt ggtttgcaac ttctgctaaa
     2401 tcagcaaagc gagcaagtga attggaataa agagcaaagc tacctgattc aacgccattt
     2461 acgcccaaca cctcgagttt tacttggctt gactatcgcc tctattgcta atgcagcgat
     2521 tgatatttca gatggtctat tgtctgattt aagccatatt ttaaagcgca gtgactgtgg
     2581 tgcagtatta aaccttgaga atttcccctt gtctgacgtc ttacttagtt gttattctcg
     2641 aacagaggca gaatattttg ccttaaacgg tggcgaagat tacgaactct gctttaccgt
     2701 gccaaatgac aacaaagcca aattagacaa agcattagcc aatatcggag taacttatac
     2761 atgtattggg caaattcgtt cggctaaaga aggtttaacc ctattacgtc ataatcagcc
     2821 tgtcaccttg ccctcacaac gaggctacga tcattttaaa aaataacgca atgaaaccaa
     2881 ttaatcttaa aaatccgatt catttttttg cctttggctt tggttcaggc ttattaaagc
     2941 ctgctcccgg cacctggggt agcctcgccg ggctaattgt agcaatagcc ttgtggtcta
     3001 tcacacaatc cgccctgttt ttcggcttac tcaccctagt ttcttttatt gccggttgtg
     3061 ttatttgcac caaagccagc caagatctag aagtacacga tgacgggcga attgtttggg
     3121 acgaaatagt tgccatcttt ttgatgttca cctgtttgcc tgaatacaat cttcttggct
     3181 acctgctcgc ctttatcagc tttcgcattt ttgatatttt gaagcctttt ccaatccgct
     3241 attttgatga aaaattagaa agcggtttag gcattatgtt tgatgatatt ctcgcagcca
     3301 tttttgccct gatttcactt catcttttat attatttcat ttaaaaattt atgctcacta
     3361 ttttatttat tcattttgcc gggcttatca gccccggccc cgatttcttc tatgtcgtca
     3421 gacaatccgc cagccactca gttaaaagtg gggtacttgc cgcaaccgga atctcaatcg
     3481 gcattatttt ttgggcagcc tttgcgattt ttggtttagc gtggctcagt aatagtattg
     3541 gctcgctgtt tcaatatgcc attatgatta tcggtggctg ttacctggtt tatattggct
     3601 ctcaaatggt acgggtaacc gaaaatatca tttttgttga aaataaagct caactcacgc
     3661 cgctaaaccc ttggcaggaa attaaaaaag gcttattaat caatatcttt aatgccaaag
     3721 ctggcgttta ctttaccagc gtcatttcag cctatgtaga taatttaagc aataccctac
     3781 aaatgttcga actacttcta ctctttgtgg taagtacctt tatttatttc tgtgtggtgg
     3841 cactactctt ttctcgccga ccggtcagac tgttctatgc caaatatagt cgctatattg
     3901 acaatatctc aggcgtaatt ttcatcttat tcggctcgat gctgatttat gaaggattca
     3961 gccactttat ctaatcacaa gcggtctgat ttcactaaaa atttgcaaat tccgctatca
     4021 ataaatagtg ttattttata cagtttctgc tatgctactg ccaattttaa ctctgagaga
     4081 acaaaatgat tggacgatta cacggcaaaa ttattgaaaa gcaaccgcct gaaattttat
     4141 tagacgtgca aggggtaggc tatgaactac tgctcccgat gaccagtttc tacagcctgc
     4201 cacaaattgg cgaagaggcg actattttca cccatttagt ggtgcgagaa gatgctcact
     4261 tgctattcgg ctttgcccaa aaacaagata gaactctatt ccgtgaatta attaaaacca
     4321 acggtgtcgg gccgaagctc gcgttggcaa ttctatcagc aatgtcggtg tcgcaatttg
     4381 ccaccgcgat tgaaaatgaa gagctggcaa aattaaccaa aattccggga atcggtcgga
     4441 aaaccgcaga acgcttattg gtggaactca aaggcaaatt taaaggaatg gcacagagtg
     4501 atttctttgt ggaagtatcg cacgagcaaa ttgtggcaag taatacgcca gacccggcaa
     4561 atgaagccct tgatgcctta atagccctag gctacaaacc tgccgatgcg gaaaaaatga
     4621 ttaagaaagt gaataaatcc ggtgcaacga gcgaacagct tattcgtgag gcgttaaaaa
     4681 attcattatg atattgatag tatagggcga aagatatttc gcccctacaa tctcattttt
     4741 aaaaatatat gtgtaggggc aaatcaatat ttgccctcat gagtaatata gggtaatacc
     4801 attccactac aacaataatc taaatgtatg attgaagcag atagaatcat cagtgcctcg
     4861 cctaagcgtg aggaagaagt tatagaccga gcaatccgcc cgaaactgct tgccgactat
     4921 gtcgggcagc cttctgtgca tgatcaaatg gagatcttca tcaaagccgc taaattgcgg
     4981 gaagaggcat tagatcactt gctcattttc ggcccgcccg gtttggggaa aactaccctt
     5041 gccaacattg tggcaaacga aatgggggtg aatattcgca caacttcagg gccggtgctg
     5101 gaaaaagcag gcgatttggc agcaatgctg accaaccttg aaccttacga tgtgctgttt
     5161 attgatgaga ttcaccgcct ttctccagcg attgaagaag tgctttatcc tgcaatggaa
     5221 gattaccagc tcgatattat gattggggaa ggacctgctg ctcgttccat caagctcgat
     5281 ctaccgcctt ttacccttgt aggggcaacc acccgtgccg gctcactgac ctcaccgtta
     5341 cgagatcgtt ttgggattgt acaacgctta gaattttact cagtggacga tcttactctg
     5401 attgtcaaac gcagcgccga ttgcttaaat ctcaatttgt cggcagacgg tgcttatgaa
     5461 gtggctcgcc gctcccgtgg cacaccccgt attgccaacc gcttactccg ccgagttcgg
     5521 gattacgccg atgtgcgtaa taatggcatt attacctcag acattgccaa acaagctctg
     5581 gcaatgctcg atgtggattc ggaaggcttt gattttatgg acattaaact gttgcaagcg
     5641 attgtagaac gctttgatgg cgggccagtt ggattagaca atcttgcggc agctatcggc
     5701 gaagaacgag atacgattga agatgtgcta gagccttatc tgattcagca aggctttcta
     5761 caacgcacac caagaggcag aattgctacc agcagaacct atgcccattt aggtataacc
     5821 caaatagatt agtcatattt ctaaaggcat tgatacataa ataaaaagcg gatagttagt
     5881 actatccgct ttcatttgca aaaaatcaat aaaatttgac cgcttatccg ctaggctttt
     5941 tcagtctcaa aacgctcaaa agctaatact ctgctttcta attttctgag aacgattgtc
     6001 ataatgccgg taattaccaa gtaaataacc cctgccatac cataaattga taatgcgtca
     6061 tactctgtac cataaagctg gcgagcatag cccataatat ccataatcgt aatggttgaa
     6121 gcaagcgatg tgcctttaaa aactagcaca atctcattac tataagaagg taaagcacgt
     6181 tttaatgcgt aaggcactaa aattttcagt gtatctaaac ggctcaaacc aagggctgcg
     6241 caagtttccc attgcccctt cggaatcgct tttaccgcac cgtggaacaa caatgtcgaa
     6301 taggcagcac tgtttaacgc taaagccaac attgcacaga accaagcgtc ggataataat
     6361 acccaagccg cactttctgt aatccattca aattgccccg ggccactata aatcaagaaa
     6421 aattgaatta ataaaggcgt tccggtaaaa agcgtaataa atccgtttac caaccacttt
     6481 aacggacgat tttctaacga gagaataaac gtaagaatga tcgctaaaat aaaggcaatg
     6541 atgagcgcca caaaagtgag ctgtaggctg gtgccaatac cctgtgaaat ttcaactaaa
     6601 taatcccacc acattaagca actcctcgct caaaacgggt aaatctacct tctaatactt
     6661 taatcactcg ctggctaatt agagtaatcg ctaaataaat aagtgctgct atcccatacc
     6721 aagtaaaagg ttgatgagta ttagcattaa ttaactccga ttgacgcatt aaatcatcta
     6781 ccccaattaa cgataccaat gccgtatctt ttaacagcac taaccactga ttgcttaagc
     6841 ctggtaaagc gtgtcgccag acttgaggga gaataatgcg aacaaatact tgcgctcggc
     6901 ttaaccctaa cgccgtacca gattcccact gcccaactgg aatagcttta attgcaccac
     6961 gtaaagattg ggaagcataa gcagcaaaaa taatacccag cgcaatagcc ccacaccaga
     7021 aagcatttaa ctccgcaaac tcatcggtga tcaagaaaat aacttggata agaccaaaat
     7081 agatcaaaaa taccactaaa atctccggca acccacgcaa taatgtaatt attatactag
     7141 ttggtttacg gatacatgca atcttactgg tttcaagtac cacaaaaaag attgacaata
     7201 acattccaat caagaggctt gccagcgcaa tccctaaggt catcagggtt gcgttgacaa
     7261 gtaagtttaa aatatcgcta gacattattt cccagccatc caagtattat aaatttgctc
     7321 atatttacca tttgttttga tggtagctaa agccgaattt aatttttcaa gcaatgcagt
     7381 gttagattta tttaccgcaa taccatatcc attaccaaaa aaggctttat cgactacttt
     7441 ttcacccacg aaatctaact ctttttcggt ttttagccac tctgccaata ctggtgtatc
     7501 accaaatacc atatcaacac gtccattttt taaatctaac actgctgatt gtaggctagc
     7561 gtaaggtttt aaattatatt gtttggcatt tttgcttaag tattgttgaa aagttgtacc
     7621 attttgcacg ccgacattct tagctgtttc cggtgtaaat ttccccttca ttgcgacata
     7681 acttactgag ttttctaaat aagcattggt aaaggcaacc tgtttttgac gcgcttcagt
     7741 aatatccatg cctgaaataa ttgcatcaaa atttttaaat tttaatcccg caattaagct
     7801 atcgaatgat tgcgttttaa attcgcaagt tgcttttagt tcttcacata atgcttttgc
     7861 aatatctaca tcaaagccaa taacttcacc tttttcattt gttgtttcaa aaggggcgta
     7921 agaaggctcc atcgcaaaag tgatagtttc ttgtgcattg gcagaaagcg ttgcaaatgc
     7981 gatagcggaa gctaataata attttttcat tgttgtgtcc ttttgttgtt atagattact
     8041 ctgagtgaga taaatattga gcaaattgct ctgttttcgg tgattcaaaa caacttgcat
     8101 caccttgttc aataattgta cctttttcca tgtacaccac tttgcttgcc accttacgag
     8161 caacgcctac ttcgtgagtc acaatcacct gagtaatgcc tgtagattgc aattctttaa
     8221 taatatcaac tacttgtgca gtaatttccg ggtcaagtgc tgcggtaggt tcatcaaata
     8281 ataagacctg tggctgcatc atcagtgctc tggcaatcgc cacccgttgt tgctgaccac
     8341 ctgaaagatg cagtgggaaa cgctcggcaa actcgctcaa acgcaaacgt gccaaatgtc
     8401 cttttgctct ggcaaccgct tcttctttgc ttaacccaag cactttcatc ggggcttcaa
     8461 ttaagttttg cattacggtt aaatgcggcc ataaatgata ctgctggaac accattccca
     8521 cctcacggcg taacaaactc accgctttgc tgtcggtttt agcagttaaa tcaaattgat
     8581 gatttgcaat cgccaaagtg cctgattgcg gtacttccat taagtttaag gttcgaatta
     8641 gggtactttt acctgcccca ctcgggccaa gcaatacaac agtatcccct ttttcaatct
     8701 ctaagttaat gtcaaataag gcttggtttg agccataaaa aaaattgaca ttttgaatac
     8761 gaattgccat tcgttaaaat cctactacat ttaaaataat gaatgaatac taattatttt
     8821 tgcataacta tgcaatattt ttttctttta gaacaaaatt tttgtaataa aatagcactt
     8881 acatcgtcta acatcgttaa atggcgtaat ttatttggaa tatgaatact gattacgcta
     8941 taattttcgc cgagacaatt aaaaatagga tttcaatatg attagatact ttttttcact
     9001 cgtcttgagt ttattgatga taaactcatc tcacgcaaat cttttctctc aacccaaatt
     9061 cctaaaatcg gaagaagcct ttgttttttc aatccaaaat gaaaatgaaa cattacagtt
     9121 aaattgggat attgcagaca attattatct ttataaaaaa gaaatccgtg tcacgccaca
     9181 gaatattgag ataggcgaca tcacttttcc cgctgccgag caatataacg atgaattttt
     9241 cgggcaggtg gaaatctatc gcaaccactt agggctaaag gtaccgttta aagaaattaa
     9301 agacaacgcc tcaatcgtag tggaatatca agggtgtacc aaaggctttt gctatccacc
     9361 ggaacgggtt gagcttaaat tagacagtat tctctctgct acacctgaag aactggcgca
     9421 actggaagca caagcggtcg aaaagagcga aaattttgca aaaaccgaca atatggcgcc
     9481 ccctgaaaat gtggcaaaag cagagcaaga tcaactggct gaaaatttag ctaacaatcg
     9541 tttttccatt ttttggtttt ttgtattagg cgttggatta gcattcactc cttgcgtact
     9601 gccgatgcta ccacttctct ctgcgattgt aattggaaat aagcaacgcc cttctaccgc
     9661 taaagcattg ctgttaagta ttgcctatgt gcaaggaatg gcagttactt acaccttact
     9721 tggcttaatt gtagcggcta tcggcttgcc tttccaaatc gccttacaaa gcccaccggt
     9781 gttgattggt ttatctatcg tctttattct gcttgcctgc tcaatgtttg gcttatacga
     9841 aatccagcta ccaaatagct ggcaacaaaa actcaatgca atgagccaaa aacagcaagg
     9901 tggtgcgttg ggtagcgtgt ttttaatggg gatgatcgca ggcttaattg cttccccttg
     9961 tacttctgcc ccactttccg gtgcgttgct ttatgtggca caaagtggcg atttagtcac
    10021 cggtggctta gccctctatc tactcgcact gggaatgggc ttaccgctga ttttgattac
    10081 cttattcggc aacaaaattc tgccaaaatc cggcgaatgg ctgttaaaag tgaaagctgc
    10141 attcggtttt gttatgcttg ccttaccggt gttcttatta agccgtgtgc tgccaagcca
    10201 ctatgaaccg tttttatggt cggcccttgc ggttgcattt ttgatctggt tggtggatgc
    10261 gattccatct aattcaatca cgaaaaagat catcaaagtc ttattattgc tcgctttagc
    10321 cattgccgct aaaccttggg cagatttagc ttggaacggc tcaaccactc aacagcaaac
    10381 tacaccgcac ttagcgttag aaaaaattca atcacttgcc gatttagaga caaaattgac
    10441 cgcttccaaa ggtaaaaaag tgatgctcga tctctatgcc gactggtgtg tcgcctgcaa
    10501 agagtttgaa aaatacacct ttagtgacca aaatgttcag aacaaactga atgaaatggt
    10561 agtgttgcaa atcgatatga cgaaaaactc ggctgaaaat atcgagctga tgaaacactt
    10621 taatgtatta ggtttgccaa cgattctgtt ttttgatgaa aacggcaatg aaatgagcca
    10681 atctcgtgtt actggctttt tggatgccga gcaattttta gcttggctga ataagttata
    10741 aagaaaagaa atgaatcaag aaaatcataa aattgaagac attattcgca tttttaatca
    10801 atgcttttct gatgaatata acactcgcct agagcggggg ggtaattatc cgatttactt
    10861 gcccgaattt atggacgaag atggtgtgcc gagcgaacgc ccttacaatg tgattttatt
    10921 tgctcacggc tattacagca gtgccttgca cgaaattgcc cattggctcg ttgctggaga
    10981 agctcggcgt aaacttgaag attttggcta ttggtacgag ccggacggac gctctgccga
    11041 acgccaacgt gaatttgaaa gtgcggaaat caaaccgcaa gcgattgaat gggtgttagc
    11101 aactgctgcc ggttttcgtt attttgctag tgccgacaat ctctcgggca atcccggcga
    11161 taattcagcc tttaaacaag cagtgtacga ccaagtcaag ctctatgcag aacgtggcta
    11221 ccttcccaaa cgagctgaaa ccttgcgtaa agccctctgt gctttttacg gtacacctga
    11281 tgtgattgat ttagctcaat ttgatattga acgaatttag ttgcaaaatt tttaacaaaa
    11341 cagaccgctt gttgcatata caagcggtct catttttgaa aaatattgca tttgtactaa
    11401 acgataccct acttatctat ttctattgcc ttgattactt cctatccaaa accctttgtt
    11461 tcagagtaca actgtttctt tttttcatat tttctattat attagcgtac aactgttcac
    11521 tgaaatagaa agtaaaaata agattatgag cactttagat tttcacttta tccaccgttt
    11581 ccaccagcaa gttcaggctc ttagccacca cccagcttta cgttttatgc aagatgaaaa
    11641 atggtcagaa ataagttggt tagaattaca aaaacaggtc aataatcttt cttatgcctt
    11701 gctggcaaac ggtcttgccg ttcaagagaa aatcgctatt tttgcacaaa atatgcctcg
    11761 ttggacaatt accgatattg ctgcaatgca aattcgtgcg gtagcagtgc cgatttatgc
    11821 aaccagtacc accaaacaac ttgaatatat cctgaatgac ggggatataa aaatcctctt
    11881 tgttggcgat caggaacaat atgatcaagc catagaaata gcgaacaact gttcgctatt
    11941 aataaaaatt gtcgcgatga aagactcaat agatctgcgt gatttcccta tcgctcaaca
    12001 ttggcaagat ttcattaagg ttaatcaaga tgaagctgaa ttaaccaaac gtttaaatga
    12061 taaatgctta gaggatttat tcactttaat ttatacctcg ggaacaaccg gtgagcctaa
    12121 aggtgttatg ttagattatg ctaatttagc tcatcaactt caggcacata ataaagcact
    12181 ccctcatatt gacgaaaatg atatatccct ttcattttta cctttatcgc atatctttga
    12241 acgtgcttgg gtcacttatg tgctatacag aggggcagta aattgctatc tggaagatcc
    12301 tcaacaggta cgtcaagcac tctcaacggt acgacctaca ttaatgtgtg ccgtaccaag
    12361 gttctatgaa aaaatctata ctgcggtgtg ggataaagtc caacaagcac cgatacatcg
    12421 ccgagcgtta tttaaatggg caatccgtac cgccgaagac aatctgtttg gtaaaaaatc
    12481 agcctttttc caccgcttgc agtacattat ggcagataaa ttggtgctag gaaaattacg
    12541 agccttacta ggcggtcgta ttcgtatgat gccgtgtgga ggagctaaat tagatccgtc
    12601 tatcgggcta tttttccaaa gtataggcat caatgtaaaa cttggatacg gaatgaccga
    12661 aactactgcc actatttcat gctggcagga aaaaggcttt aatatcaact caaccggtac
    12721 cttaatgcct gatgttgagg tcaaaattag tgaagaaaat gaaattttag tgcgtggagg
    12781 cttggttatg aaaggttact acaaaaaacc ggaagccact gctcaagcct ttactgctga
    12841 aggttttcta aaaacgggag atgccggtga actggattcg gaaggcaatc tttatattac
    12901 cgatcgtatt aaagaattaa tgaaaacttc aaacggtaaa tatattgccc cacaatacat
    12961 tgaaggaaaa ataggtaaag ataagtttat tgagcaaatt gcggtgattg ctgatgccaa
    13021 aaaatatgtt tctgcgttga tagttccttg ctttgatagc ctcgaagagt atgcaaaaaa
    13081 gctcaatatt cgctatcaag acagattaga actcattaaa cattatgagg ttgtcagaat
    13141 gtttgaacaa cgcattaacg aattacaaaa agaccttgca agttttgaac agatcaaaaa
    13201 gtttacacta ctttcgcaag catttagcac caaaatggaa gaaattacgc ctacattaaa
    13261 attaagacga aaggtcattc tagaacgcta taagcaacaa atcgaaaaaa tgtacgaatc
    13321 ataatgaaaa acagagatcg tctttctgct tttcatttat accgcagcgg taaccacaat
    13381 ttcgactttc caatttggat tggctaattt agcctccacc gccgctcttg gtggagcgtt
    13441 atttggggca acccattcgt cccacgcacg gttcatttcc gcataatctg ccatctcttt
    13501 taaataaacc gtagccatta gaattttact tttatcgctg ttggcttttg ccagccattt
    13561 atcaatttct gcaagcactt gctgggtttg ggtgtaagca tcggcggtgt catctaacgg
    13621 cacttgccct gccaagtaag ccacaccgtt atgtattgcc atttccgaaa aacggctacc
    13681 tacttcaaaa cgttgaatca tttttacctc tactgtttta tacattgccc tttataagct
    13741 ttatgccctt ttatttcttg cttgatatcc atttcttttt catcaaaatc agtgatgatt
    13801 agttccactg ttttattatt atcactatca gaaagtgagc taaataaatt ctcttcaaat
    13861 tgttgtagct ccgcatcacg ttgtaattca gaccatattt gtgaacgatg gctacgctgt
    13921 acagattctg agacgatacg ataaacaata gccccgtttt tcacactcca gcgcccattc
    13981 tgttgtaatg aatactcaaa aatcgacttt tgaatagggt aatatatacc accttgattg
    14041 gtcatagtcc catttgtgga aaatcgtaaa ttatccaccg tacgaatatt aaaatcatcg
    14101 tactcaatag tgcattgcca ttgcccaatc agttgattag gattagaaat tgttgaggaa
    14161 caaccagcta atgcaagtgc tgataaacct aaaaaaatta actttttcat attctctaaa
    14221 taaagacaag cggttgaatt tgcaaaaagt tttgccaatt cgaccgcttg ttacttgtgt
    14281 aaaattactc tacttttaca atccagcctt gcggtgcttc aacatcgcca aattgaatac
    14341 cggttaattc tgcgtataaa cggcgggtga caggccccac ttcggtttct gaatagaaga
    14401 cgtggaattt gtctttatgt tgaataccac caaccggcgt aatcaccgca gccgtaccac
    14461 aagcaccggc ttcggcaaat tggtctaact ggtcgatata cacatctccc tcaatcgctt
    14521 ccatacctaa acgctcttga gcaaggtgta gcaatgagta tttggtaata cttggcaaaa
    14581 tcgactctga aatcggggtg atgaatttgt tgtctttggt aatcccaaag aagttcgccg
    14641 cccccacttc ttcaattttg gtatgggttt tcggatctaa ataaatcgca tcggcaaatt
    14701 tacgggtagt tgaactttgc tcaaccgcca attcgtgcgg taataaactc gcagcgtagt
    14761 taccgcctac tttcacacca cctgttccca ttggggctgc acggtcatag tcggttgtaa
    14821 tgaagtttga gggtgctaag ccacctttga aatatgcccc caccggacag cagaatacgg
    14881 aaaaaataaa ttcaggtgca gctttcaccc caatattttc gcccacgccg attaaaaacg
    14941 gacgtaaata aagggttgcc cccgaaccgt aaggccctaa ccaatcttga ttggctttta
    15001 ccactttttt acaggcacga ataaacagct cggttggcac acgtggcatt aataaacgat
    15061 ctgcggtgcg ttgcatacgc tcggcatttt gatccgggcg gaataagtta attgagccat
    15121 ctttacagcg ataggctttt aacccctcaa aacattgttg cccatagtgc agggcagttg
    15181 agccttcgtg aatatgcagt gtattgtctt gagttaattc gccttcattc cattttccgt
    15241 ctttccaatg tgcaatgaaa cggtaatcgg ttttgatata agaaaagcct aaatttgccc
    15301 aatctaactc ttttaatgcc atgttgtgtc cttttatttt tatgttacga aataattttg
    15361 acattctaaa acaaaatagc tcttgaggta agaagtttaa gcctaaatcg caagaaaaaa
    15421 ttaaggctct taaacataag agccttaaca tactggtttg aaattatgct gcgtgttttg
    15481 ctgcggtttc ttttaataag gtttgaagtt cgcctttttg gagcatttct aatacgatgt
    15541 cacaaccgcc aactaattca ccttctaccc ataattgtgg gaaagtcggc cagtttgcaa
    15601 attttggcaa ttccgcacga atatccggat tggttaaaat atccacataa ccgaaaggca
    15661 cttggcagtt aattaccgct tccaccgcac gagcggagaa accacaagat gggaatttcg
    15721 gtgaaccttt catataaagt agaatcggat tttcgctgat ttgttgtttg attttgtcaa
    15781 tagtttccat ttttagcctc aaaataataa tttaaaatag ttgagtaatt atatcagaat
    15841 taagttagca cagaaatagc tttaaatatc aatatcacgc cgtcctgcaa aagagtgaga
    15901 aagcgttgtg ccatcaacca tttctaatga accaccgacc ggcacaccgt gagcaatacg
    15961 agtagctttc acgttataca ttctgcacat ttcagcaatg tagtttgcgg tagcatcacc
    16021 ttcaatggtc ggattagtcg ccaaaatcac ttcgtggaaa gattcctgtt ccaagcgttg
    16081 ttgcaataaa tctaagccga tttcacgagg gcctatacca tcaatcggcg acaaatgccc
    16141 catcagcaca aaataacgcc ctgaaaattg cccggtttgc tcaatcgctt gaatgtcttc
    16201 cggcatttct accacacaaa gttgcccgct catctgacgg cgaggatttt tacaaatcgt
    16261 acactcttcc tcttcggtaa aagtacggca cgatttgcaa tgtccgatat ggctcattgc
    16321 ctcatttaag gcttttgaca acgccacacc gccggaacga ttacgttgca acagatggta
    16381 agccattcgc tgtgccgatt tcggtccgac accgggcaat gcacgcaagg cttccatcaa
    16441 attttcaagt aaaggactgg tttgcatact taaattagaa tgggaatttc atacccggcg
    16501 gcagttgcat accggcagtc acacttgcca ttttctcttt ttgcatttct tctgcacggc
    16561 gaaccgcatc gttaaaggca gcggcaacta aatcttccac catctcttta tcatcttcca
    16621 ttaatgatgg atcaatttca attcggcggc aattgtgagc cccgttaata gtgactttta
    16681 ccaaacccgc accagactcg cctgttactt ctaattgggc gatctcttct tgcatttttt
    16741 gcatacgctc ttgcatttgc tgagcctgtt tcattaagcc gcctaagcca ccttttccaa
    16801 acataatttt tcctcttaat tttcaataaa aaataaacgg cttattctac tgaaccactt
    16861 tctaatccgc aagcggttaa tttttcccaa aattttgcaa atttgctaaa atggctactc
    16921 tttttattcc tcgcacttta actatggctt taacccgttt attaatcaac cattttagaa
    16981 atatccaaca taccgattta gcatttagcc cgcattttaa ttttttagtc ggggcgaacg
    17041 gaagtggcaa aaccagtttg ttggaatcaa ttttctatct tggacacggg cgttcattca
    17101 aaagccatat cagcaaccgc attatccatt acgataaaga cgatttcgta ctacacggta
    17161 aaattgacga ggcaaagcac agttggtcgg tcggcattca gaaatttcgc agtggcgaga
    17221 cgacacttaa aatcaacggt gaagacggca acaaaattgc cgatttagcc catttattgc
    17281 cgatgcaagt gatcaccccc gaaggcttaa ccttacttaa cggtggtccg agctttcgcc
    17341 gtgctttttt ggactggggc ttatttcacc agcaccctga tttctacgct cattggaaca
    17401 atcttcgccg tttattaaag caacgtaatt cggctttgca acaagtccgc tcttatcaag
    17461 aactcaaagc gtgggatatc gaattggtga aaaccactta tgccgtgagc gaaatgcgag
    17521 ccgaatacgc cgaagcgtta cgccccgaaa ttgagaaaac ctgccaattt ttcctgccgg
    17581 aaatcgaaat cggcttgagc tttcatcaag gctgggaaaa aggggcggat tatgccgaga
    17641 ttctggcaca aggttttgag cgggataaag ctcttggcta tacgatgatt ggagctcaaa
    17701 aagccgattt ccgttttaaa gcgaacggct taccggtgga agatgtgctt tcccgtgggc
    17761 aattaaagct attgatgtgt gcgttaagac tggctcaagg cgaacatttg gtcgcccaaa
    17821 aacaacgcca atgcctattt ttaattgacg attttgcctc cgaactcgac ccaaccaaac
    17881 gtgagctttt agcacatcgt ttaagagaaa gtggctcaca agtattcgtt accgccatta
    17941 ctcaagatca gctcaatcaa atgcaatggc aagacagaag cgatgattgt ttgtttacgg
    18001 taaaaaatgg agaaattcag ccacagtaag cggtcagatt tgggggcaat tttacaaaaa
    18061 tgtttcttcc gatggcgcga gcgtccacgc tcgtgccaaa acaagcggat aattttgcat
    18121 aaaaatttgc aaaaaacagc tctttattaa ccgcttgtag aatattaaat agcactagcg
    18181 tggacgctag tgctatcaga gcaaaacctc aacctacctt tactttcttg aatcgtgagc
    18241 ctgttggagc aatactctac tctctttcaa gaactgctcg gaataatcgc caaaccagtg
    18301 atgcacttcc tcaaaagcct tgataaaacc ggctttgtcg ttgcgtttaa agaaatctag
    18361 cccttgttca aaactctctt ttaaggtttc gatggtggct aaattttccg gtttatcggc
    18421 aataatatcg gcatataagc tgccgtcttg ggcaaataaa cgcccaatca ttgccaactc
    18481 taagcggtaa atcggcgaag atagtgccaa taattgagag agttgcaccg gctggcgaga
    18541 aagatgtagc ccgaatgcaa aagtggaaaa gtggcgtagg gcttgaatgt aggtcattgc
    18601 attatcgtgt gctgctgcct caatctcttc aatttttgcc ccccaaattt tgatttgctc
    18661 aagcaaccat tgataacgtt cagggaaacg cccgtggcag caagcgacca cttgctttgc
    18721 ctgacttgca atatccggtc cgaacatcgg gtgtaaaccg actaccgctc cattatgcac
    18781 ttccagcatt ttttgcaacg gctgatgttt gacggaggtt aaatccgcca aaatcatatt
    18841 ttcggttaaa taagattgta aacgctcgat ggttgctagg gtgttggcaa tcggcacaca
    18901 cacaataacc acatctgcat tggctaaaat ctgctcggca ttgtcccaat catcacgtcc
    18961 taatgcctca acattatagc cggatagggt taaataattg ccaaacagcc cacctaattt
    19021 ccctttacca ccaacaatca cgattttttg aatgtccgaa ttaactcttt tgaagccgtg
    19081 tttgttttca ttggcataag attcacgcat tatacggcgt agcacatctt caatgagatc
    19141 cgccggaata ccttgttttt ccgcttcaga gcggcgggcg gaaatcattg cggtttctcg
    19201 ctccggagca taaacaggaa tgccgtgttc tgatttgact ttcccaactt ctgccacaag
    19261 agctaagcgt tcagaaagta aggcgataag ttgttgatca acttgatcaa tttgttctcg
    19321 taatggggct aatgggttca tatttgttac caatttacaa gcggtcgttt ttatgcaatt
    19381 ttttgcaaat tatctttaac gcaacttttc agcaaagtga gttaaaagct cttctgtagt
    19441 ttgccagtca atacaagcat ccgtaataga aacaccgtat ttcatctgct cgaacggcaa
    19501 ttctgatgat tgattacctg cgtgtaaatt gctttcaatc attaaaccga taatcgaagt
    19561 attgccagca agtagctgct ctaatacatt ttctgccacc agcggttggc ggcggtaatc
    19621 tttattggaa ttgccgtggc tgcaatcaat cataatcgct gtaggtaagt ttgcttgttt
    19681 tagcacccat tcacaatcat caacatattg cttttcataa tttggggttt taccgccacg
    19741 taaaataata tgtccgtctg cattaccttt tgttttgagt aaagtaactt gcccctgttg
    19801 gttaatgccg ataaagctat ggctttgagc ggaagattgc atcgcattaa gtgcaacggc
    19861 taaatcacca tctgtaccat ttttaaagcc taccgccatt gacaaacctg aggctaattc
    19921 acggtgagtt tgagactcag ttgttcttgc tccaattgcc gaccagctga acaaatccgc
    19981 taaatattgt ggtgtcatcg gatctaaggc ttcggtcgct aacggcaagc caagttcggc
    20041 taaatccaaa cagagttttc gtgcgatacg taagccggtt tcgacatcaa aagagccgtc
    20101 cattttcgga tcgttaatca gccctttcca acctacagta gtgcggggct tttcaaaata
    20161 aacccgcatc acaatataca acttatcact cacttgctcc gaaagagctt ttaatttttt
    20221 accatattca agggcagcaa ctgggtcgtg aatcgaacaa ggtccaatca caatcagttg
    20281 gcgtttatct cgtctgtgaa taatatcgga aatcgttttg cgtgaacgtt caatttgatt
    20341 gcgtaaatgt tccggcaacg gaaattcttg ttttaactct tgtggggtca gtaatacctt
    20401 ttcatcttgg atatttacgt tatgcacgct atcttgatta aacactgtgt tcattttaat
    20461 ttccttttgt gtaaatcttt taatacacaa actttacaac gtaattttta aagtttcaac
    20521 tactttttgt ttcacactct ccaccgtgat tttttccatc caatttttgc ctttagcttt
    20581 agttgcccaa gctaattgct gccaaggttt accataagat tgcaaaatcg cttcatcata
    20641 taccgaaacc actttgtcta agtcattgta agggcctgtc cgtcttggat tatgaatcgc
    20701 atacaaccca atcaccggcg tattttgcgt agtggcgata tgggcaggac ctgaatctga
    20761 agagatcacc aaatcaacct gacgaataac acctgcaagc tgttttagcg tggttttacc
    20821 ggcaatactc gtacaattcg gggcaagttg ttgaattttg gctgcggttt ccatttcata
    20881 ttgcgatgga gaacctgcaa ttaatacatt gatattttgc ttacttagcc agttagcaat
    20941 ttctgcatag cgttccggca accaatcttt ctctttcttg cttgaacaag gagcaatgag
    21001 tatatttttc cttgtaaaat caataaattg tttgccataa gctaaatctt catcactcac
    21061 aggtaaattc cattgtgccg ataaatccat tatcccaatg gctttggcaa acatcatttg
    21121 cccgtcaagc acgtgaggag agtctgtcat ttctactttc tggttggtaa acaaccattg
    21181 catttccctt gctctgtctt gattaaagcc gatttttttc tttgctttaa tcccaagcga
    21241 tagaattgaa gctcggaatg ccgtttgtaa atttaataaa aaatcaaacc gcttgtgaga
    21301 aagtttttgc caaagtgtaa agataccttt ccaccctatt tttttatcat aaggaattaa
    21361 gtgaacattc ggaatatctt tcattaaata cgcttccgtt ttgccgataa tccaagtaat
    21421 ttcagcacta ggatattttc gttgaatagc ttgaataacc gctaaggtat ggcaaacgtc
    21481 gccaatggca gaaaggcgga gaatacagat agaaagaagt ttattgtgca taataatatc
    21541 aatagttcag attacattaa gctatattaa gacagaaaaa aagccacata aagtgtttta
    21601 tgtggctttt gcgttaatcg tttagattat tcaactctta agatacgaca agtatttgta
    21661 ccgccagctt ttaattcatc tccgtgagtt aaaagcacta attcgccggt taataaatag
    21721 ccttgttctt ttaattgagc aatggctttt ttcgcccctt ccattgtgcg gctgtcttca
    21781 ttgtaatata ccggtgttac accacgatat aacgcacaaa ggtttaatgc tttttggtta
    21841 cgagacatcg cataaatcgg taaacctgag ctgatacggc tggttaattt agccgtttcg
    21901 cctgaatgag ttaatgaaat aattgccgat acaccttcta aatggtttgc ggtgtacatt
    21961 gcagacattg ccacagcttc ttcgatagat ttaaacgtac cttccatacg gtggcgagaa
    22021 atgttaatgc ttggcattgt ttcagcacct aagcacactt ctgccattga ttttaccgtt
    22081 tcaacagggt agtcaccgtt tgcagtttcg ccggaaagca ttaccgcatc agtaccatct
    22141 aacacagcat ttgcaacatc catcacttca gcacgggtcg gcattggttt tttaatcatc
    22201 gattccatca tttgggttgc ggtaattacc acacgattta gcttacgagc acggcggatt
    22261 aaacgttttt gcacacccac taaagccgca tcaccaattt caacccctaa gtcaccacga
    22321 gcaaccatca caacgtccgc acctaaaatg atgtcgtcca ttgcttcttc agtcgcaaca
    22381 gtttcggcac gttcaacctt cgctacaatt ttcgcttcta agcctgcttc ttttgctaat
    22441 tcacgtgcat aatgtaaatc tgcacttgat tgagggaatg aaaccgctag gtaatccaca
    22501 ccgattttcg ccgctaattt aatgtcttct ttatctttgt cggttaatgc aggagctgat
    22561 aaaccaccac ctaatttgtt aatcccttta ttgtttgata acgggccacc aactgtcact
    22621 tcagtatgaa ctttaacgcc ttccacttcc aacactttca gttgaacatt accgtcatct
    22681 aacaatagaa tatcaccagg tactacatca tttggtaagt ttttgtaatc taaacctaca
    22741 gcttcttgat ggccttctcc acgcggtaaa tctgcgtcta aggtgaattt atcaccaata
    22801 tttaagaaaa ttttaccgtc tttaaatgtc gaaacacgaa ttttaggacc ttgcaaatcg
    22861 cctaaaatcg caacgtggcg acctaatctt gcagcaattt cacgcacttt attcgcacgt
    22921 tcgatgtgat cttcaggaat accgtgagag aaattcatac gaaccatatt tgcaccggca
    22981 gcaatgattt tttccaacgt attgccacga tctgttgcag gtcccattgt acaaacgatc
    23041 ttcgttcttc tgagttttct agacattatt tgactccatc aataaattta aaaattaagt
    23101 taaaatcttt ctaagcatct tgattatgcg ttaaacgagg gtcattatac gcctaaatca
    23161 agagagttta aatacaacta aaggagaatg ttatgaatat ttggattatg cgccatgggg
    23221 aagcaggctt taatgcttcg agtgatgctg ctcgctgttt aaccgacaat ggtataaaaa
    23281 acaccatttc acagggaaaa tggttaggag aacatttagc caaccaacaa attcaattag
    23341 ataaaattct cgtcagccca taccttaggg cgcaacaaac gcttgaaaat gtgcttattg
    23401 gtatgcaagc ggtcaatttt ccccaacatt ttaccaacct cattgaaagt tgggacgagg
    23461 ttacgcctga cggaaacccg catacagtag aaagctatct acatttttta agagaggaag
    23521 gcgcaaaaaa tattcttctg atttcacatc tcccacttgt gttcgatctc gtccaaattt
    23581 taacgaataa ccaaagcaat gtacaatttc caacttcaac catagcagaa attaattggg
    23641 taaagacaaa agctgagcta attcgagtaa agcatactta attctttcat ttttagaatg
    23701 tcaatataaa aattttcaat ttttttataa attgtcgaat ttatagactt ccaaaatacc
    23761 taaaaaatgc gtatcatacc agccctcaaa tcagtactaa actgatccat aagctattat
    23821 aagaaagtac ggtatttacc gtacttttta tttggatatc cctctggtta aaattacttc
    23881 aaatttgtta ataaaaggtt aaaaatgcaa ataggacaat atgcaatcaa aaatcgtatt
    23941 ttccttgcac ctatggctgg aatcacagat cagccttttc gccgcttatg tagccaactt
    24001 ggagcaggtt taacattttc agagatgatg tctaccaatc ctgatgtatg gcatactgag
    24061 aaatcacgat tgcggttagc acaccacgat gaaataggct taaatgccgt acaaattgca
    24121 ggttctgatc ctgttgaaat ggcaaaggct gcaaagataa atgttgagta tggtgccgat
    24181 attattgata ttaatatggg ttgcccggca aaaaaggtga ataaaaatat ggcaggctct
    24241 gctcttttac gtaaccccaa attagtcgct caaatattag attctgtagt caatgccgtt
    24301 gatgtccctg tgacactaaa aattagaaca ggttgggatc aggaaaatag aaattgtctg
    24361 caaattgcga aaattgcaga acaagccggc ataaaagctc tcactattca cgggcgtact
    24421 cgaagctgtt tatttaatgg cgaagctgaa tatgaaagta ttaaggcagt aaaagaagca
    24481 atttctatcc cagtgatagc aaacggagac attgactctg cggaaaaagc aaagtttgtt
    24541 ctcgactata ccaaagccga tgcaatcatg attgggcgcg ctagctttgg aaatccttgg
    24601 atatttaagg aaattaatga tttttttgaa actggattat cttcaccatt atcaattgat
    24661 aaaaaatacc aattaatgtt taaacatatt gaggatttgc accaatttta tggtgaagaa
    24721 aaaggttatc gtattgcacg aaaacatgtt ggttggtata ccgaaaaatt aaatccggaa
    24781 tcaaatttta aacgcacttt taatacacta agttccacaa aagagcaact ttatgcatta
    24841 gaagattttg ttaaatcgat tcatttagaa tctcaattaa gaaaagttgg ataaaaaaat
    24901 gttagagcaa caacctacac aaaacccatt aacagtaaca atgttaaatg cacaagcgca
    24961 gcaggttaat aaaccacttc gcgataatgt gaaagcagca ttaaaaaact atttatctca
    25021 attaaatggt gaagatccaa cagaattata cgaattagta ttatctgaaa tcgaacaccc
    25081 aatgttagat atggtgatgc aatatactcg cggcaatcaa actcgtgcag caacaatgct
    25141 aggcattaac cgtggcacat tacgcaaaaa attaaaaaaa tacggtatgg gttaatctaa
    25201 ccgaccgtta aaacacgatt ttaattcgta tgtaattagt tagagccaac aaaaaacgct
    25261 gaatatacta ttcagcgttt ttctatttta ttttgccgtc taaaacttca tttcaaatgc
    25321 taaactgaaa tttctccccg gagcggcaaa tcgagtgtaa ttgctacccc ggtcttggtt
    25381 tactgcattc acaccggatt ggcgcactga ttcccaagtg gaatatttac gattagtcac
    25441 attataaatt cctccacgta aggtgtagtt tttataattg atgtaaccgg taatatcatg
    25501 ggtgtaccaa gaaccggtca gtttgccacc taaatcaacg cgatgtatgc cgtgatgacg
    25561 tgtgcctgcc acctcatcgg cgtttttggc tttagaatag gtggtagtaa tgccaattcc
    25621 ccatttttct tctgggtgat cgtagccgaa tccaagcaca tagcgtgctg gctgaatcgc
    25681 atctagaata ggatcgttta cgctatcgag tcttgagtcg gttagtttcc gctcttttac
    25741 ttttacacgg ttataagcaa ctgatgaata aaaaccatct ggcagcatag ataaaatacc
    25801 gtgtaagtca aatttagcga ctaaatttat cccatttagt gctacatctt gaatattatg
    25861 gtagttatag aaacagtgtg atttttgtat tattctttta catgctgtcg caatcatatt
    25921 tttatagtta ttacggaaat agctcacatc aaggtaacca aattgacctt taaagctaac
    25981 tccaatctca tgattagtcg atttttctgg ctctaactgg tggctacgtt gcgcgcgttg
    26041 cacatattcg ttatctttaa gcccaatatg atcacgttta ccataaagtt catagaatgc
    26101 aggcactcta aaaccgtttg aaatgcgata agaaagcgat acaaactctg ttggtttaag
    26161 cgtaatccca ccattccaag accaatttcg ataagttcgg ctaagtgtcc acggatcatc
    26221 agatttaaat cgatgttgat caaaacgcac ccctaatccc aaatccacat actcgcttat
    26281 cactagatcg cggaagctaa caaaatggct atcgccttta attttacgcg gttcacagtt
    26341 taagatgtcg ccgcgtgtat tattacacaa agataccgtt tcaatactgc gtggatcgcg
    26401 gcgataaata tatggattat ctaaacgccc tctaccgcgg tagctggtat aaccgccttt
    26461 ggtatattgg gcagtcatat ccccatgatc cataagcgaa ttaaatcgat caaagcccaa
    26521 ccctaaattc agtttgtggg tttgcttaaa tacgccttga ccagcattta gcgctttatc
    26581 aaattctaaa tgaatgacac gatgcttttc ttggtaatta ttacgctcag ttcgatacat
    26641 agaccaagat ttatccaaag tcgggcggca atttttatct accacaggat aatcgctaca
    26701 atgcaagcga tgtagccggc tatatagttc aatatcttgt ttatccgcac tgagtttaat
    26761 gctatccaac cagcgattat tctctggttt atatttatag gtgaatccta aacgacgttt
    26821 gtggtgacgt tcatcaaaaa acttcacatg gctatagcgc aacccataag ggatccttgg
    26881 cttgaacact aagccatcta aaatattatc cccttcataa acatagttcc taagtgataa
    26941 gttaatatcg tcttttgtat agtaagctgg cgtttgcata tcacggatat cgtagcgttg
    27001 ttttgtatct tctaagattg cgccaagata atgagacgag ttaaagtgat agccaaactt
    27061 cataaaaaca gaattactct tgtaatctaa agggtttggt gcaatgcgat ctttaccggt
    27121 atattcttgg gctgagagct gctcagtgcg ataaggaatc tgctcaagct gtttgcgctc
    27181 ttcaggcgta tattccggaa atgttctcac tgggaaatta tcgcggttca acttaaccct
    27241 tgcacgagga gtacaatcta atgttgggca agtatcttcc acaataaaaa aagatcctcc
    27301 aggagcattc tgtgcggaat ttgggtaaag atcgtagcga ttttcaaagc cggttatacg
    27361 ccgaatatta tgttttaatt tatttgcctc ggaatgaatt ttggtctctt taccgtgtcg
    27421 gtgagttgca ataacaagtg cttcaaaacc acccgcctca ccagccgctg cgatagactg
    27481 taaaaaatgg ctatttttgc tggcataaga ggtcttacta tctaagcccc aatgctgccc
    27541 ctctttaata atatcctgcg catctttagt acgaaaacca atagcaccac ctagcgcacc
    27601 agagccatat tccgcagaac ttgctccttt gcttaactca attgaacgaa tgttttcata
    27661 ctcaatctca ttaattgcac caccattagc atctgaacct agcgtatgat aatgctgcgc
    27721 ttgtggtagc ccatcaacaa gtaagctgac acggttttta tctacacctc gaatggcata
    27781 gccactactt gcaccgcgac cttgttccac caccgaaata ccagggtcat agcgagttaa
    27841 atcacgaata ccaagaattt gatttttact catttcgtga taatttttca ctactttccc
    27901 caagccagtt acttcgtttt gacgttcgtg agcataatgg ctctctgtca caataacttc
    27961 atccagaaca gctagatcgt tattttcttc tattttttta ttttcagtcg cagcaccgta
    28021 tgaatgagaa agagcaaata acactgttaa ggcaacaggt gaatagcgaa aatgatgata
    28081 tttcattatc attagatagg gtctccttta tttaaatttt gcaaattttt ataaaaaatt
    28141 gcccgcttgc tatctacaac cagcaaaggg gaattatgat tatttttcta tttgacgttt
    28201 tccgccgaat gtaatactga ctctatcttt atccgtttct gcactatgta caataccacc
    28261 taattccgtc gccttagggc cataaaagcc cccttcaaat tgagtattta tatgcactac
    28321 cgtgccacca ttcgtacttt tcggatcaag attaaaacca gaattgcccg ttttggctgt
    28381 gcctgcaaaa ccattccctt tcagattgcc ttcaagtgtc agcattgggc gttcttcaac
    28441 accatcatta gcaatcagct tgccattaat ttttttattg acaaaatcta catcgaatag
    28501 tgaacgagta ccactttcgc tgttacttgg cgattcagcc cctgccgagc cagatttact
    28561 gtacattacc ccgtcccaag tacctcgata ttttactgtc cctgttggca aatctgccac
    28621 agctgtacgt tctcctacta aatattggtg agcagtatca ctattatttc cctcgctata
    28681 agtcccaaat ttgacataat ctaaattatt acagcagact gaaactcgat acgttttatc
    28741 atcaatagta cgggtaacca aatcatcaaa tttcatctcg gcaaagcttt ttttgccttc
    28801 cgcaataagt ggaatctgct tattgttaat aatcaaatgt gtcgcattcc cgaaagtatc
    28861 catctcagat ttatttaaat ctttaagttt aattttgaaa gcatcaaagg cagattcact
    28921 atcatctttt ttagcatctc gtttgccagc aaaaacaaca aataccgact tatcatcagc
    28981 taagaattta ccggcaagtt cttgagcctt cccaccaaaa aatccacctt caagtgtcgt
    29041 agagctttta ccaaaataag gatcatcggt attttttgcg tttgctttac cagaaaagcg
    29101 attaccttta atttttgcat caatatcgta aattgttgta attttttgct ctttgctacg
    29161 actaacatac ccattacgaa ccaatgttcc agttaaagtt ttattagcaa aatcagccgt
    29221 aaattctcct gtatgcccca ttggtttttc agaatcatca acattaatat cgtaactatt
    29281 ttccggtgtg gcgccaatat tgatgcctgc ggaattagaa aaatatttac tatctctccc
    29341 ttttctcgca tcggtagtaa aatcccaata tcctttataa gtagcttttt gagtaggtat
    29401 tgcttttgcc ggctctatac ctaaatagta aacataccca tgtgcacctg ttctcaaaat
    29461 ttctttaggc tttatttcag gttttgcacc agaatgcaga acatagccgg aacgaacaaa
    29521 attaaaatct ctagtataca acttatgatt tctatcatga gtatggctaa atccatcagc
    29581 actactaccg tacgctttaa cctcttcttc atacggaatt tttgtcagat ctccagtaat
    29641 ctcttttata tcaccaatag gggctacatc ttccttcccc tgcggaaaga gattacgacg
    29701 cggaattttg gctgaaaaac caaaccccgg ctgcaataaa gcttcagttt cagaagcgct
    29761 tactgtacgt cttgcgttac tattatcatc ttgtaaactt ggctttttgg gggtagtttg
    29821 cgtttgagat tcaactttgg cagattgaac atcaaagctt ccaccatttg aggaacaagc
    29881 agcaagtagc gccgcattaa gcagtacaaa actactttta agtttaaaca taatgtctcc
    29941 ttttaattta taaaatgata atcattataa tttattatat aaactaatgt aaaggtttga
    30001 actttattag tttcaggatc atgttaatca tttcaaggtg gaaacgcttg tttttagatt
    30061 agataaaaaa taaggagggt cgaaatagcg ggtatacaga aagtgcttat agccaaaaaa
    30121 tagtctattg ttattgaata caagcggtct attttgtcac atttttgcca aatttggtta
    30181 aaaaaccaac cgcttgtaat cttaactgaa gatagatagt tttttatttt ttctacaact
    30241 ctacagggct ggatttattg cagaatggta cttgccacta actatcatca ctcccaggat
    30301 aatttataga aacaatacga gaaattgtgt taataaatga aatgaataac gttaatccga
    30361 taatggtggg aaaccaccta aatcttttaa acgattgacc attgcacaga aaagttctgc
    30421 cgtgcgctcg gtatcataca acgcagaatg cgcttgctta ccgtcaaacg ggatttttgc
    30481 cacctggcag gcttttacca acacggtttg cccatacata aaaccggcaa gggtggcggt
    30541 gtcaaacatc gcgaaagggt gaaagggatc tcgcttggca ttaattcgtt taatcgcagc
    30601 ctgtaaaaag ccctgatcga acgctgcatt gtgggcaaca atcaccgccc gttggcagcc
    30661 ttgctccttc attgctttgc gaaccatttt gaacatttcc ggaatcgcaa tattctccgc
    30721 aaccgctcct cttagagggt tgtcaatatc aatgccgttg aattttaatg actcagggtt
    30781 aatattcgcc ccttcaaatg gcgcaatatg aaaatggcat tgttgatccg gcactagata
    30841 accttgctcg tccattttta aagtaattgc cgccaattcc aataaggcat cagtttgggc
    30901 atttaagcct gctgtttcca catcaatcac aaccggtaaa tagccacgaa aacgatgctt
    30961 taataattta taatctattt gttccgttgt ctgttccatt tatctatcaa cctaaaatac
    31021 aagcggtctg atttgcaaaa ttttttacaa atccgaccgc ttgaatattc atattcgcaa
    31081 aaattagttt cctaacgctg ctttcgcatc tttattctca ataaattcga ttttataacc
    31141 gtccggatct tcagcaaagg caatcacagt tgttccaccc aataccgggc ccggctcacg
    31201 ggtaatttta ccgcctgccg cacgcacatc ttcaatggtt ttgtaaatat catctacgcc
    31261 taacgcaata tggccataag ccgtgcctag ctcatattta tccacacccc agttataagt
    31321 cagctcaatc accgcacttt cgctttcatc ggcatagcct aaaaatgcta acgaatactt
    31381 atactgctcg ttctcgcttc tacgtaacag acgcatacct aacacatcgg tataaaactt
    31441 aattgagcgc tctaaatctc caactcgtaa cattgtatgt aaaattcgca tattttcttc
    31501 cccctgaagt taaaaaacga cccctattat ggcataatct tggcttaaaa tcattttctt
    31561 tatacctttt gggattatct atggctcacg atcacgattc gccgtcaaaa cttgaaattt
    31621 caacccacgc tgcactgcca atggtattaa tgctgtttat tgaaatggct cttaacttct
    31681 actctgcacc gaaaaattca atttttattt ctccttactt attggcgttt ttcgtgacct
    31741 cattaatcag ttttttagtg ctatggaaag gcgaaatctg ccgagggcaa gccagccgtt
    31801 taagctttat tttacccttt ttacttattt tcgccgtagg gaatttcctt tattccatag
    31861 gctttacgcc aaagcataac ccaatggcgg tggcaagcat tgctgcagtt tttgcctgct
    31921 taatctactt ccgcctgccg gaagatcaaa ccttatataa cacattgatg tattgtggtt
    31981 tggctatatc aagtattggt attatccaat atttagccat ttattggttt gaactgcctt
    32041 cattgtttaa cgggattcga gccaacaatt tcgcccaagt gctgttaggc attttattag
    32101 ccggctggta tttaatgtta gcgaaaagcc gtttagatgt tttcctcaaa ctgttggtga
    32161 aaaccgccct tgtggtgctg attctcaatt attgctggac agcttttgtg ctttatcaac
    32221 atctacaaat tatgccggat atgccattgc tttcatttat catctatttt gcagcacaat
    32281 ttgtgatttt attgatgttg gcgtggttat tacttggaaa aaacatcaaa aatccgaccg
    32341 cttggacagt tgctacgctg ttagcgattt tatacccttt cgctaatgta gtctgattta
    32401 tgaaacgggc attaaaattt ttcggcattg caaccgttct atctgttgtg gcaatctact
    32461 attttttaat gcccagccac tatcttgcca cgccgattaa ctggattttg ccgaaagcgt
    32521 ggaaagttca actcccacaa ggcttaaacc tgaattggca aggctcatca cttgctcaat
    32581 ttcaactctc ttatcgagat tgcccgctac taagtgccga taaaaccgat ttgggttgga
    32641 ttgagaaaaa ccatctttct gtcgataaat tggatattga ttaccgctgc cttgccttgt
    32701 ttccacaaaa tgaacacagc aattccgaca cttcactcaa cgcattgctg gcggtcattc
    32761 ctgatggcga agcgactatc cacgccctta actggaaaaa tttgcctacc gatttcaacc
    32821 caagacttca gcggcttttt gagcaaacag ctattaaact ctcactttca aaaggtgaaa
    32881 ttcaggcaac tgccgctcaa caagcggtca aatttgcagc aaattttgca aatgggcggt
    32941 tgaatgccga tttatcatat caaccgaatg aaaaagaaca gcataatctt aggatttcag
    33001 cagaaattga ggacaatttt acccaactgc cgcccactat ttccgctgaa tatgattggc
    33061 aattatctta tgaaatcatc gccaataaag ccttgcaaaa gggcgctcta ttctcagttg
    33121 gcaaaaaaat gccgcacaaa agttagaagg caactggcag gttgaacttg ccgaaagtga
    33181 aaataacaaa ctggatttcc cttttctgtt tgatggggaa agcctagaaa ttcaacaagg
    33241 gcggtttgat tggcacttta cccaacaatt tccactgcaa gggtttgtta gcaccaagct
    33301 cacaccgaaa tcattcaacc aaaacggctt tttgccactc aaaacggcga ttcgtatcag
    33361 cctgctttcc caaaacagtt ggggtaaagg caatattgta atctccaatt cagacggaga
    33421 aataaccgaa aaagggctga atttaccgct tcgtttgacg ggtaatatca aacacggcaa
    33481 ttttattctt tacagtagcg tgccactgga ttttcaaggt aattttgacg atttaagcgt
    33541 aaaatttttg cctagctccc tacttcgttt gaccggaaaa gagcggtatt taaccattga
    33601 agatttacgt tttccacttg ccggaattaa aattgacaag cacggtattc acggacgact
    33661 gcacgcaatt ttaagagggc aaagccctga ttttaacaat atcgagttcc atttagacgg
    33721 acaagcacaa aattttaagg ctggagcctt agattttttc caagatccta aagatgctaa
    33781 cgcagtaaaa gacagttgga aatggcgaat ttggggagca tctatcctca aagccttcaa
    33841 cagtaaagtg aatttaagcg gcagagggca atggcataaa cagcttgtgc ggttggaaga
    33901 actcaaaggc gatttagcca ccgtaaagtt agcagataca accatttcta aaatcacgct
    33961 taacaatacg caagctattc gatttaatgt caaaaaattc acccttgacg gagcggtaat
    34021 gttgcaatca cctgagattg ccttcagtta tggcggtgtg ctacccaaac cacgagtgaa
    34081 tctcgccttt gatggtgaag tcgaaaaact acgttttaaa ggagcggtga ataccaccga
    34141 actcggccca ctcaaactgt tcgcccgccg ccaattaagc caagatgcca gccaaattat
    34201 cggcaaactt tattggccgg agcaatctgc tcaaggcttc cagccgcttt ttccgtttcg
    34261 tagccaatgg gtgatcaaca acggtacaat tcggggcgaa acggcgttta gtgccggcag
    34321 taaaaacggg ctgattgccg gtgggcattt agccattcgt aacggcggtt tatctttacc
    34381 taatggcgaa gcaaaaggga ttgaattttc gcttccctac cgctaccaaa acggacgctt
    34441 tcatttcgga gccaaaaaac cgcttgatgt aaaaattgcc caaatcaaac tgggggattt
    34501 agcattagat aacgcttcaa tgaaactcaa cggttactac ccttatacca aagctaagcc
    34561 attgaattta aatcaattat cctttgattt gtttggcggt aaactgaatg taaaacgctt
    34621 tgccttacca caaaccgaac tggcttacct gaatttagag cggattgact ttgagcaaat
    34681 tttgcaattt atgcaatatc agcaaattga tctcaaaggc aaagccaacg ctatcttgcc
    34741 gttttggtta agcggaaaac cttgctatat ttgcgatggc ttactgacac aggcggaaac
    34801 ttcctattta acctttaccc ctgaattgtt gtcagaaatg cagaaaagtg gttacaccga
    34861 gcaaattttg ttacatttag tagataaaag cacgattaac gattttcgca gtctgattaa
    34921 tgtcgggccg aaaggcgatt tagtattaga cggaaaatta aaattatctt ccaatcaaaa
    34981 taaatcaaaa gtgaatttaa actataatca ccgagaaaat ctgtttgatt tgtggcactt
    35041 aattaactat ggctcacaat ttgaacaaaa attagaaaat tacctctatc aaaaactgga
    35101 acgatgataa agaatggaat aaatatgaaa ccggccacat tttattttgc aatattttta
    35161 ctgaatttga ccgcttgtac gccgaaagta cagcttgaaa cgccaagtga aggcattacg
    35221 attaatatga atgtggtcgt tgatcaccgc attgatgtga agatggacga gaaatcccga
    35281 gcggtgatca ccaaaagtga gaacaaaacg aaaaattagc tgaagataat catttgatga
    35341 tctttaaatt gtgcataaat atcggctaat ttttcccctg tcggtagtac taaatcaggc
    35401 gttaaatcaa acatcggcac aatcacaaat tcccgatttt tcatctcgat atgcggcacg
    35461 ttcaaacgct cggtttgaat ttgctgattg ccgtacaaaa taatatccag atctaaagtt
    35521 ctctcccccc aacggcgtac acgcactctt ccctgctcat tttcaatgct ttgcaattta
    35581 tccagcaatg cagtgggcga taggtcggta ctaaattttg ctaccgcatt gacataatca
    35641 ggctgatctt gcggtccgac aggctttgag ccgtagaacg ggctgatttc aaactcattt
    35701 gcaaattttt ttaatttttc gaccgcttgt ttaagctgct caagcggatt ctcaaggttt
    35761 gatcctaagg cgatatagac ggtttgcata aaatatactt acaaatataa caa
//
LOCUS       DANLRW010000010        35600 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.010, whole genome shotgun sequence.
ACCESSION   DANLRW010000010 DANLRW010000000
VERSION     DANLRW010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 35600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35600
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.010"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            1..2287
                     /locus_tag="PXA71_000412"
                     /pseudo
     CDS             1..2287
                     /locus_tag="PXA71_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759321.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(2365..3066)
                     /locus_tag="PXA71_000413"
     CDS             complement(2365..3066)
                     /locus_tag="PXA71_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HDL5104561.1"
                     /translation="MDLQNRENFLNKLAQRMGRPRQNVPEPIPVLENNHAITRLTDRP
                     QPQLCQEFIDFARVMMADVVEAKEADLPQAIIDICEKYGGASVIVNNDQRLKDLGITA
                     AIQAKYEDSYVWDFNQAETNFEKARTANIGVVYGEYGLAESGGIVLFSDKEFGRSVSL
                     LPEKSVVVLRKSTVLPRVAQLAQILHEKAQRGERMPSCVNIISGPSATADIELIKVVG
                     VHGPVNKIYLVIDDL"
     gene            complement(3071..4480)
                     /locus_tag="PXA71_000414"
     CDS             complement(3071..4480)
                     /locus_tag="PXA71_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HDL5104562.1"
                     /translation="MSYLQTNTLPFKQRVEQQVNNEIVRKALVKAQETIGANRQRMVD
                     ELGNWEEWRDDAKAIRNHVLANLDAYLYQLSEKVTQNGGHVFFAETAEEATDYIKNVA
                     KAKNAKKIVKSKSMVTEEIGMNHVLEAEGIKVVETDLGEYLLQIVGDKPSHIVVPAIH
                     KDRHRIRQEMHDVLGYQGSETPEEMTAFVRQKIREDFLEADIGISGCNFAVPETGSVC
                     LVTNEGNLRMATTVPKTHIAVMGMERIAPTFKEVDVLITMLARSAVGAKLTAYNTWLT
                     GPRLEGETDGPEEFHLVIVDNGRSKILESEFQEVLRCIRCGACLNTCPAYRQIGGHGY
                     GSIYPGPIGSVISPLLGGYEEFKELPYACSLCTACNSVCPVKIPLAQLILKHREKIAD
                     AGLTPMAERLSIFGFNFANSHPTLWKVGVKVGAKVASKLIKNGKAPVNFGALGEWTKA
                     RDLPTAEGESFREWFNNRG"
     gene            complement(4482..5213)
                     /locus_tag="PXA71_000415"
     CDS             complement(4482..5213)
                     /locus_tag="PXA71_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDL5104563.1"
                     /translation="MNVNFYVTCIADVMKAGVAKNTVLLLEKLGCKITFLEKQGCCGQ
                     PAINSGYTKQALAGMKNLVETFEANDYPIVAPAGSCVYAIKTYPDHFERFGEKEWAER
                     AKKVADRFYDLTDFIVNKLGVKDVGAYLPGKAVYHPSCSLFRKLGIKDEPIALLQHVK
                     GLELLPIKNQETCCGFGGTFSVKMAEISGEMVKEKVANVDTDEPDYLIGADVSCLMNI
                     GGRLSREGKPIKVMHIAEVLMQGGK"
     gene            complement(5357..6961)
                     /locus_tag="PXA71_000416"
     CDS             complement(5357..6961)
                     /locus_tag="PXA71_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDL5104564.1"
                     /translation="MALFLSVFPIVLLIYLMVKRNALPSYVALPLTALLIFVLQLTYF
                     GNDTTLIFANIIAGLGDVLTPITVIFGAILFNRFSEVSGATNTMRKWLGTINPNPVAQ
                     LMIIGWAFAFMIEGASGFGTPAAIAAPILVGLGFKPLQVAMLALVMNSVPVSFGAVGT
                     PTWFGMGPLLKDGLLTDAQVLEIGSITALIHSIAAFIIPVMALRLIVSWKEIRQNIVF
                     IYISIFACVIPYFIIAQFNYEFPSLVAGAIGLLVSVWVANMGIGLAKSENHLDGDKAT
                     FGEVAKALLPTGLLIFILVITRIQQLPLKAMLNDATAWIVSSLGFANFEISQGLIFAL
                     KNILGTNVATSYKLLYVPALIPFVVTVLICLPIFSVSGKNTQEIFGTSFKQVKKPFLA
                     LLGAIVMVKLMLIGGVDSMVQIIGKNFAEFTGQSWTLFASFLGAIGAFFSGSNTVSNL
                     TFGTVQYATAQQVGLSVTLILALQSVGGAMGNMVCINNIVAVCSVTGIEKQEGNIIKK
                     TAVPMFVYGVIAAISALFIVPMFYNL"
     gene            complement(7251..8342)
                     /gene="ychF"
                     /locus_tag="PXA71_000417"
     CDS             complement(7251..8342)
                     /gene="ychF"
                     /locus_tag="PXA71_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDL5104565.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVV
                     PMPDPRLDALAEIVKPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGH
                     VVRCFENDDIVHVAGKIDPADDIEIINTELALADLDSCERAIQRLQKRAKGGDKDAKF
                     ELSIMEKILPVLENAGMIRSVDLDKDELHAIKGYNFLTLKPTMYIANVNEDGFENNPY
                     LDRVREIAEKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYRL
                     LNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYQDFIDNKGEA
                     GAKEAGKWRLEGKDYIVQDGDVMHFRFNV"
     gene            complement(8528..9115)
                     /gene="pth"
                     /locus_tag="PXA71_000418"
     CDS             complement(8528..9115)
                     /gene="pth"
                     /locus_tag="PXA71_000418"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDL5104566.1"
                     /translation="MSEIKLIVGLANPGVKYEETRHNAGEWLINELARIYNVSLKEEP
                     KYFGKVAKINTAQGEVRLLVPTTFMNLSGKAVGALANFYRIKPEEILVAHDELDLPPG
                     SVKLKKGGGHGGHNGLKDIIAALGNNKEFYRVRIGIGHPGHKDLVANYVLGKPSPSDQ
                     TLLNSAVDEAARCVEVLFKDGMVKATNRLNSFKAN"
     gene            complement(9188..10063)
                     /locus_tag="PXA71_000419"
     CDS             complement(9188..10063)
                     /locus_tag="PXA71_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HDL5104567.1"
                     /translation="MMKKFIPVMIAALVLSACSSQPAKRKSTPRIKATAAYIPTENSA
                     YVVFDLNQKKFLEGKNFNLVRPIASVTKLMTAVVFLEENRYGASCQTQILPSDADFLK
                     GTTSPLPKNLNIACSELLKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMT
                     QTYFGDSSGLSSDNVSTVVDLAKLAGYAASKPEIQQLSNSPLVSVYAGGRYFSMKNTN
                     SMVRSQSYQALVSKTGYTREAGYNLAFIAKGDCRGKRIGVVSLNNDNAASRTDFTESM
                     LAKYQCVPNPYRQYD"
     gene            10285..11865
                     /gene="prfC"
                     /locus_tag="PXA71_000420"
     CDS             10285..11865
                     /gene="prfC"
                     /locus_tag="PXA71_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HDL5104568.1"
                     /translation="MSYPQEVNKRRTFAIISHPDAGKTTITEKVLLYGNAIQTAGSVK
                     GKGSAQHAKSDWMEMEKQRGISITTSVMQFPYNDCLVNLLDTPGHEDFSEDTYRTLTA
                     VDSCLMVIDSAKGVEERTIKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVESVLK
                     IKCAPITWPIGCGKLFKGVYHLYKDETYLYQTGQGHTIQEVRVVKGLNNPELDQAVGD
                     DLAQQLRDELELVQGASHEFDHTEFIKGELTPVFFGTALGNFGVNHFLDGLTEWAPAP
                     QARQSDEREVSPSEEKFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRIG
                     KDVVISDALTFMAGDRSQAEEAYAGDIIGLHNHGTIQIGDTFTQGENFKFTGIPNFAP
                     ELFRRIRLRDPLKQKQLLKGLVQLSEEGAVQVFRPLINNDLIVGAVGVLQFDVVVSRL
                     KTEYGVEAIYETVNVATARWVEGKDAKKFEEFKRKNEANLALDGGDNLTYIAPTMVNL
                     NLAQERYPDVQFFKTREH"
     gene            12124..13698
                     /locus_tag="PXA71_000421"
     CDS             12124..13698
                     /locus_tag="PXA71_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5104569.1"
                     /translation="MKKWLIPLTVAAFCVSACDDKNSTQATAEKPQVENTQSQKNAEI
                     LPLATVVAPWEINSLDPNQSGVIFQRMNLAETLVEADLNGNLIPALATDWRSNEEGTI
                     WRFTLREGVKFHNDQVLTAQAVVNSLNIAKSKPGVLAKAFIKEIRAVDNKVEIELTKA
                     FVPFPPFLTHYTALILAPESYNEKGEVTQIIGTGAFKPTKIEAPQKLEAVQFEGYWGK
                     KPQVQQANYLASSRSETRMLMAQSEPSSLVFNLDTASVARLKADPNLQLVSGSIARTI
                     QLKMDVAKPFFNDLAIRQALSQAINRKAIAEQVLKIENGAADQILPKAFADWRVDTAE
                     QVVDIAKIKQNLTASGYTFDEQGRLTKDGKPFSFTMRTFSDRPELPVIATILQAQWKQ
                     IGVEVNVSVGNFSEIPAGHQDGSLEMALYALNYGKTLDPYGVIASDFANGGSDWGVMN
                     WQNTEVDNAVKSLETERDPQKAKALKQTVSKIIYNDLPIIPVVYYQQNVVAHKEVKNV
                     TLDPFERRFFLELLSK"
     gene            13918..14850
                     /locus_tag="PXA71_000422"
     CDS             13918..14850
                     /locus_tag="PXA71_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5104570.1"
                     /translation="MHKILFRRLIQILLVIWSVGTLTFILTRQLSGDMAYRIAASRYG
                     YDQADSAAAEAVRAELGLDQPWWQSYFSWLSDLAQFNLGKSLVTGDPVWSEIQHQFGH
                     TLSLAIVALILAILIGPPLGLLAARKPNGFFDRLTLVFSTLFRSVPAFIIAIGLITLF
                     SAQLKWLPAGGYGCWQHFILPALTLAIGLSTVSVRVTRSAMVQVKGSEFYQFSQLKGL
                     SRWHTFLRHGLPNIAVPVIAYHAVQLVYLIEGVVVVESLFAWPGSGHALVHAIIARDV
                     PMIQGTTLVMGGLFVVLNTIADLLSAWIDPRIKR"
     gene            14860..15642
                     /locus_tag="PXA71_000423"
     CDS             14860..15642
                     /locus_tag="PXA71_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5104571.1"
                     /translation="MKISISQYLGGTILLAMLGFAFLQPYFYPMDIGFQDLTNILSNP
                     NEIAWFGTDHLGRDMLARLASAIRLSFGLSLFSVICALIAGLITGIMAGFFGGWIDRI
                     FSFICDLVMALPGLLLVLLFAALSPGSFWTLYLGISLVMWVEFFRVIRSISSTMANSS
                     EIQASRLMGMGWFYSFKRHLLPRLLPMIATLSAFSLGNAILALATLGFVSVGLRPPTA
                     ELGLMMTELFPYYYEAPLIFLQPVVAVFLMVLSLQLLSRKIK"
     gene            15731..17143
                     /locus_tag="PXA71_000424"
     CDS             15731..17143
                     /locus_tag="PXA71_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5104572.1"
                     /translation="MKLLDIQNLSVETENRLQLVEPISLQLKAGKNITILGETGSGKS
                     LLIQAIMGALPDGLIASGEISVKNCKISTESDRLQTLWGKTLVMLPQEPRRSLNPIMA
                     IGKQLWESFHYVAGKPSSQAKTESKAYLAKLGLGESVENYPHQLSGGMAQRASFAIAT
                     AAGGKILLADEPTKGLDPISKGKVIELLKSAYQNGGGLLTITHDIEVAEQLGGTILVM
                     KKGELLEQGEAKALLNNPQHPYTKALISADPKHWQPLQDLQNLSQKQPLVSVKNLSIA
                     RGKKTLFSNLSFDLHKGEVLGIVGHSGIGKSSLADVLCGLLKPKSGEVVWHSHSHKKH
                     QVLKLYQDPPEAFAPNVSLKTLLDDVINKHQLDRLPIPSLLQQLSLNPEILQRNAENV
                     SGGELQRVAILRALLLEPVLLFADEVTSRLDPITQQETIELLINQCRARNCSLILVSH
                     DPYLIEKSCDKVINLEEYVG"
     gene            complement(17230..17973)
                     /gene="rlmB"
                     /locus_tag="PXA71_000425"
     CDS             complement(17230..17973)
                     /gene="rlmB"
                     /locus_tag="PXA71_000425"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDL5104573.1"
                     /translation="MSEQIYGIHAVKAFLDNAPERLIEVLVLKGREDKRLMPLLNELQ
                     RLGVAIQQVNRQTLDNKSQGEVHQGIIARVVPQKELNEHDLEAILSQKKNPLLLILDG
                     VTDPHNLGACLRTADAAGVDAVIVPKDKSAQLTPTARKVACGAAEVMPLIRVTNLART
                     MRDLQERHNVWIVGTAGEAESGIYEAKLTGSIALVMGAEGDGMRRLTREHCDQLISIP
                     MAGSVSSLNVSVATGVCLFEIVRQKLAGQ"
     gene            complement(18028..19395)
                     /gene="pssA"
                     /locus_tag="PXA71_000426"
     CDS             complement(18028..19395)
                     /gene="pssA"
                     /locus_tag="PXA71_000426"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HDL5104574.1"
                     /translation="MLILNKQRKAEYLLKSLPYLPQVAEQVQFLASSKAFKQQILQLI
                     QTAKKRIYITALYFEKDEAGQEVLAALYQAKRNNPELEINILVDWHRAQRGRIGEAEN
                     LSNADWYAKVKYEQGLPAGQEIAFYGVSINGREVFGVLHLKGFVFDDTILYSGASINN
                     VYLHQFERYRYDRYHVIENKVLADSWVTFIQQHLLTNEAVKRLDTENRPKTAEIRAQI
                     KHFRKQLSREAYLFNGVAENGRLAVSPLVGLGRRKNQLNKVIEALFYQTEQKLTICTP
                     YFNFPHSLRTRIEWLLANGKSVEIIVGDKTANDFYTKPDEKFTMASALPYLYEKNLRA
                     FAKRLDGYVQNKQLTIRLWKDGENSYHLKGVWVDNRYILLTGNNLNPRAWRLDAENAI
                     LISDPQHQLSEKAETELNQICQHTQILTHYSDLEVLTDYPENVRKLLKKFGRVKLDKI
                     VKMLL"
     gene            complement(19465..21012)
                     /locus_tag="PXA71_000427"
     CDS             complement(19465..21012)
                     /locus_tag="PXA71_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tannase/feruloyl esterase family alpha/beta
                     hydrolase"
                     /protein_id="HDL5104575.1"
                     /translation="MMKIIAFLFIFLSVFSHTALANSMAEQCVALKSNSPEKTAIYKA
                     EWVEKSAELPAYCLVQGEIGKRVEVDNVPYGIQFELRLPEQWNEKFLFQGAGGVGGVI
                     FPAIGKLYPHGASGANGLNRGYAVVSNDSGHATRDLVFTADPEARSNYAYASIGKVTT
                     VAKQLIAEFYRKPSKHNYIMGCSNGGREAMMAAMRYPQEFDGVIAGSPGFRVSRSVLA
                     EVWDNRALLAVAPKNGDGDKILSQALTQQDLDVIANGVLTRCDKLDGLADGLINAWEQ
                     CDFQPEMVAKQLGQKKVALIKTIFEGAKNSRGELIYSPWAYDSGINAKGWRDWKLGDS
                     QTAQPNSISFKMGLKSLTHYYLAPRVPSRDPLSVDLDQASEQVKAVGSIHDTDQVDLS
                     AFKQNGGKMLIYQGVSDPIFSAVDLKNWYQSLQQAVENPQHFAKLFFVSAMNHCGRGA
                     TVNDFDMLTALENWVEKGLEPESIAAKAGELYPNKAKQIPLCAYPKVAIYQTGEDPNR
                     LTSYQCR"
     gene            complement(21137..23953)
                     /gene="ileS"
                     /locus_tag="PXA71_000428"
     CDS             complement(21137..23953)
                     /gene="ileS"
                     /locus_tag="PXA71_000428"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDL5104576.1"
                     /translation="MTIDYKNTLNLPETGFPMRGDLAKREPDMLKNWYDKNLYQKIRT
                     ASKGKKTFILHDGPPYANGNIHLGHAVNKILKDMILKSKTALGFDTPYVPGWDCHGLP
                     IELKVEGIVGKPNEKISAAEFRQACRDYAKEQVEGQKADFIRMGILGDWDNPYLTMNF
                     NTEANIIRTLGKVIANGHLYKGSKPVHWCLDCGSSLAEAEVEYEDKVSPSIYVRFNAV
                     DVNAVEEKFNAQGKGRGALSAVIWTTTPWTIPSNRAIAINPELDYALVQLGDERVLLA
                     VDLVEDVAKAAGVESAEILATTKGENLELLRFNHPFYDYSVPFIFGDHVTTDGGTGLV
                     HTAPDHGADDFVVARKYNIEMAGLISNDGKFKADTPFFAGLGVFESNDKVVEKLQEVG
                     ALLKLSRIKHSYPHCWRHKTPIIFRATPQWFIGMETQGLRQQALGEIKSVRWIPSWGE
                     ARIDTMVANRPDWCISRQRTWGVPMAMFVHNETEELHPRTLELIEEVAKRVEEKGIQA
                     WWDLDPAELLGEEAKDYRKVPDTLDVWFDSGSTYASVVEQRPEFNGNSADMYLEGSDQ
                     HRGWFMSSLMLSTATNGKAPYKQVLTHGFTVDEKGRKMSKSLGNVIVPSEVWNKNGAD
                     ILRLWVASTDYTGEITVSHNILNSAGESYRRIRNTARFLLANLNGFDPKSDLVQPQEM
                     IALDRWAVACALEAQNDIKEAYDNYQFHTVVQRLMRFCSIEMGSFYLDIIKDRQYTTK
                     ADSLARRSCQTALWHIAEALVRWIAPILSFTADEIWGYLPQVEGRSEFVFTEEFYTGL
                     FGLTEQDKLDDAYWQQILKVRAEVNRVLEQARKDKVIGAGLEAKVTVFANDEIRPLLE
                     QLGNELRFVLITSQAIVKPLAEADIAEGELAGLAVKVENADGEKCPRCWHYATDIGSH
                     SGHEEVCGRCVENVAGEGEKRLFA"
     gene            complement(24056..25018)
                     /gene="ribF"
                     /locus_tag="PXA71_000429"
     CDS             complement(24056..25018)
                     /gene="ribF"
                     /locus_tag="PXA71_000429"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDL5104577.1"
                     /translation="MQLIRGFHNLDKHIALNQGCVLSIGNFDGVHLGHQNILARLCDR
                     ALDLGLPSVVMLFEPQPREFFAKKSGNSTACNPPARLMRLRDKLKYLEEAGVDFVLCV
                     RFSEKFAQISADDFISDLLAKRLKVRYLSVGDDFRFGAKRAGSFETLRNAGLKYRFAV
                     EESHTHSLNEERISSSLVREALQNNELDLAEKLLGKPYSILGRVAHGNKLGRTIGFPT
                     ANIMLNRLVTPIQGVFAVKVKTKQGSFNGIANVGNRPTINGTKPLLEVHIFDFNASIY
                     GEAIEVIFLKKLRNEIKFPDFEALKAQIEKDRLQAVEFFKEFAR"
     gene            25242..26516
                     /gene="nadR"
                     /locus_tag="PXA71_000430"
     CDS             25242..26516
                     /gene="nadR"
                     /locus_tag="PXA71_000430"
                     /EC_number="2.7.1.22"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional transcriptional
                     regulator/nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide kinase NadR"
                     /protein_id="HDL5104578.1"
                     /translation="MTDFAYLQQKRKQLKLKVNDICEQAGVTRAYFNQLVSGKIKNPS
                     ANKLKALHSVLDIVEDSNQRSGVIFGKFYPIHTGHINMIYEAFSKVDVLHVIVCTDSE
                     RDLRLFQESKMKRMPTNEDRLRWVQQIFKYQQKQIFIHHLVEDGIPSYPNGWEDWSGR
                     VKALFEEKSINPTIVFSSEIQDKESYEKYLNLEVQLVDPTRESFNISATQIRNNPFQY
                     WRFIPKEVRPFFVKTIAILGGESSGKSVLVSKLANVFNTTSAWEYGREFVFEQLGGNE
                     QAMQYSDYPQMVLGHQRYVDYAMKHAHKVAIIDTDYITTQAFCIQYEGKAHPFLDSMI
                     REYPFDVTILLSNNTKWVADGLRSLGSKKQRQQFQHLLKKLLEKHHIPYIKIESPSYL
                     DRYNQAKEVVEAILNEEPIPLQFKQYNIHEFE"
     gene            26534..27226
                     /locus_tag="PXA71_000431"
     CDS             26534..27226
                     /locus_tag="PXA71_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5104579.1"
                     /translation="MILFAGDPHGSYEHLYPILQQQTEEVALVILGDLQLTTPDELDR
                     LSQYCDIWFIHGNHDSKTVAAFDAIWNSSWKERNIHGKVVDIQGIKIAGIGGVFRGHI
                     WMPPNRPMFFDPIHFCQYSAPEKIWRGGIPLRHRSSIFPSDFEALENEKADILITHEA
                     PKPHPQGFSVINQLARKLGASKIFHGHYHDNFNYGNLNVSRECAIYNIGFRSLADING
                     NYLILGVDDREK"
     gene            27359..28081
                     /gene="arcA"
                     /locus_tag="PXA71_000432"
     CDS             27359..28081
                     /gene="arcA"
                     /locus_tag="PXA71_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HDL5104580.1"
                     /translation="MKIPQILIVEDELVTRNMLKSIFEGEGYQVFQASNGEEMHSVLS
                     TNEINLVLMDINLPGKNGLILAREIRENMKLPLMFLTGRDNEIDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLQRTMIDKENDVVKEQSEIESYRFNGWILDINSHSLISPEGEV
                     NKLPRSEFRALLHFCQHPGKIQTREDLLKKMTGRELKPHDRTVDVTIRRIRKHFEDHP
                     NTPEIIVTIHGEGYRFCGNIEP"
     gene            28101..28619
                     /locus_tag="PXA71_000433"
     CDS             28101..28619
                     /locus_tag="PXA71_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin family protein"
                     /protein_id="HDL5104581.1"
                     /translation="MKKLTIVALTCLFSTHLLAAPVGNTFTGIGVGVDVTTTKYKVEG
                     VKGKDSTGPALVVDYGIEQGNNFVGVVQGKAKVGSTKVFSDVKQKNKYTIAYQQGYRV
                     GSDLLPYVKVDASSSKIGNETYRGFGFGAGAKYAVSSDVELGAEYTRDNLKRSGTKLK
                     GNAFTANATYRF"
     gene            complement(28697..29926)
                     /gene="serA"
                     /locus_tag="PXA71_000434"
     CDS             complement(28697..29926)
                     /gene="serA"
                     /locus_tag="PXA71_000434"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDL5104582.1"
                     /translation="MAKISLDKSKIKFLLLEGVHQNAIDVLLAAGYTNIEVHKKALDG
                     QELIDAIKDAHFVGIRSRTFLTEEVLAQAPKLIAIGCFCIGTNQVDLNAAKRRGIPVF
                     NAPFSNTRSVAELVLAEMILLMRKVPTANAEVHRGVWNKSAAGANEVRGKKLGIVGYG
                     HIGSQLSILAEAIGMQVYFYDVENKLPLGNAQQVPTLEHLLSTCDMISLHVPEIDSTK
                     NLMSAERIAQLKEGSVLINAARGTVVDLDALAARIEDGSLRGAAIDVFPEEPASINDP
                     FVSPLCKFDNVILTPHIGGSTSEAQANIGTEVANKFVKYSDNGSTVTAVNFPEVSLPL
                     HTNTKRLLHIHENRPGMLNQINQIFVESNVNIAAQYLQTDAAIGYVVIDVESDNVDEA
                     LQRLKAIEGTIRARVLY"
     gene            complement(29963..30622)
                     /gene="rpiA"
                     /locus_tag="PXA71_000435"
     CDS             complement(29963..30622)
                     /gene="rpiA"
                     /locus_tag="PXA71_000435"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HDL5104583.1"
                     /translation="MDQQEMKKIAAQAALKFVKPDTIVGVGSGSTVNCFIDALASMKD
                     EIKGAVAASKASEQRLRDIGIEVFSANEVTELDVYIDGADEITPQGAMIKGGGAALTR
                     EKIVSSLAKKFICIVDKSKQVDVLGSTFPLPVEVIPMARSYVARQLVALGGSPEYREG
                     VVTDNGNVILDVHNFKIMEPLKMEHTINNIAGVVTNGIFAQRFANVTIVGTPEGAVIL
                     E"
     gene            complement(30767..32101)
                     /gene="glmM"
                     /locus_tag="PXA71_000436"
     CDS             complement(30767..32101)
                     /gene="glmM"
                     /locus_tag="PXA71_000436"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDL5104584.1"
                     /translation="MARKYFGTDGVRGEVGKFPITPEFALKLGWAAGKVLATQGTKKV
                     LIGKDTRISGYMLESALEAGLTAAGLSAVFVGPMPTPAIAYLTRTFRAEAGIVISASH
                     NPYYDNGIKFFSSVGEKLPDEIEEAIEAMLDKPMDCVDSANLGRASRINDAAGRYIEF
                     CKGTFPSELSLEGYKIVVDCANGATYHIAPNVMRELGAEVLEIGTKPDGLNINEKCGA
                     TDIKALQKVVVEAGADVGLAYDGDGDRLIMVDHLGNKVDGDQILFILAREALRSGKLQ
                     GGVVGTLMSNMSLELALKELAIPFSRANVGDRYVLEQLKEKGWKLGGENSGHIIVLDK
                     NTTGDGIIASLQVLAAMASHKLSLNDLAKAVPLFPQVLLNVRFEKGAANPLESNEVKA
                     VAADVEKRLAGKGRILLRKSGTEPLIRVMVECEDAVLAQSCAEEIVEAVKRN"
     gene            complement(32127..33659)
                     /gene="ilvA"
                     /locus_tag="PXA71_000437"
     CDS             complement(32127..33659)
                     /gene="ilvA"
                     /locus_tag="PXA71_000437"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HDL5104585.1"
                     /translation="MMNETQHSQSAIDYLRSILSSNIYDLAQVTPLQKMEKLSERLGN
                     SIFIKREDRQPVHSFKLRGAFAMISNLSKAQKEAGVIAASAGNHAQGVALSAKHLGLR
                     ALIVMPQNTPAIKVDAVRGYGGEVLLYGANFDEAKAKAIELSTELGMTFIHPFDSPAV
                     IAGQGTIGLELVQQKPDLDYVFIPVGGGGLIAGIAVLIKQVMPNIKVIGVESKDSACL
                     YHALKQGQPTDLERVGLFADGIAVKRIGDETFRLCQQYVDDVVLVDNDEICASMKLIF
                     ENVRAISEPSGATSLAGLKKYVKEHQLQDKNLACILSGANVNFHTLRFVSERCEIGEK
                     REALLAVTIAEQKGSFLKFCEILGNRAVTEFNYRHSDDKQACIFVGVRISGSAEKVEI
                     IKDLQQNGYDVADLSDDDIAKTHIRYMVGGRASSIQYEQLYSFEFPEQKGALLKFLQM
                     LTNWDISLFHYRAHGADYGDILAAFALNRGDEVELNRHLEQLGYRFQNVSESPAYQYF
                     LK"
     gene            complement(33920..34513)
                     /gene="slyD"
                     /locus_tag="PXA71_000438"
     CDS             complement(33920..34513)
                     /gene="slyD"
                     /locus_tag="PXA71_000438"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL5104586.1"
                     /translation="MNITKDLVPSIAYQVRTQEGVLVDEAPVNQPLEYLHGHNNLVEG
                     LEKALEGKAVGDVFEVRVKPEEGYGEYNDNMVQRVPKDVFMGVDELEVGMRFIADTDL
                     GPLPVVITEVDGDEVVVDGNHMLAGQELLFSVEVVGIREATAEEIAHGHVHGGHEHGC
                     GCGGHDHHHDHDGCCGGHDHDHHHHHGHGGCGCGGHH"
     gene            complement(34616..34756)
                     /locus_tag="PXA71_000439"
     CDS             complement(34616..34756)
                     /locus_tag="PXA71_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104587.1"
                     /translation="MKKLIKVCGLISATIFLSGCLVTSVVGGVVGTAVDVVDTVTPDI
                     ID"
     gene            complement(34828..35514)
                     /gene="aqpZ"
                     /locus_tag="PXA71_000440"
     CDS             complement(34828..35514)
                     /gene="aqpZ"
                     /locus_tag="PXA71_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HDL5104588.1"
                     /translation="MKKYFAEFFGTFWLVFGGCGSAVLAAGIPELGIGYAGVSLAFGL
                     TVLTMAYAVGHISGGHFNPAVSIGLLVGGRFNAKDLVPYIIAQVIGAIAAGAVLYTIA
                     SGVPTFDATAGFAGNGYGEHSPHGYSLTAALLIEVVLTAFFLIIIMGATDKRAPAGFA
                     PIAIGLALTLIHLISIPVTNTSVNPARSTGVALFQGSWAIEQLWLFWVAPIVGAIIGA
                     VVYRFIAEEK"
BASE COUNT        10315 a         8066 c         6993 g        10226 t
ORIGIN      
        1 attatctcac tgtatcaatt ctccttgcca ttagtggagt aggctacgct aatgaaatct
       61 ctttagagac tattactgtt gatggaaata cgccttcaac caaagggaaa ttactaggtg
      121 gtgaactaaa tagcaatgaa tctgttgttg atgaaaaaaa ttaaaacaag gtagtattac
      181 attaggtaac gctttatctg gtgaattagg cattcattca agccagttcg gaggcggtgc
      241 aagtacccca attattcgtg ggcaagagag taaacgtgca aaaatcttac aaaataatgg
      301 cgaaaactta gatatgtcgg gaatgtctcc tgatcatgca gtaaccgtag atgcgctact
      361 tgctaaacgt attgaaattt tacgtggtcc aactacttta ctttacagtg caggtaatac
      421 ggcaggtgta attaatgtgg tagacaataa aattccaacc gctattcccg aaaaaggcta
      481 tgaggggcaa tttggtgtgc gttttggctc agccagtaaa gagcgtttaa cctatgcagg
      541 ctcaaccttt gcccttggaa atcatttagc cttgcgggta cagggaatgt ataacaaagc
      601 ttccgaatac tatgctccac actttacgat tgaaggcaaa ccttaccacc gcgtaccaga
      661 tagcgatgta caatcacaaa ccggcacagt aagcctttct tggattggag agcgaggaca
      721 tcttggtatt gcttacactg atcgccgtga taaatatgga ttaattggtc acacacacaa
      781 atacgatcac tatactatta gtattattcg ccaagccgtt atgtttgcaa aaggttattt
      841 acgtttttat ccgcaccttg cagaagaagg agatattgac tataacaacc ctggtatccg
      901 tttactgcat actcatattc cgggaggctc acattatgga caagatactc acgagcacgg
      961 caaaccttgg attgatatgc actccaagcg gtatgatatt gatggaagtt tgcaaaatcc
     1021 acttcctggt tttgaagaag ccaaaatatc agctaactat gtagattact atcatgatga
     1081 aaaagatgga aaaagagttg aaaattactt caagaacaaa ggaaaaaatc tacgtttcga
     1141 attggttcac aaagagtgga aagggctaaa aggagctatt ggtgtgcaat ataccaacca
     1201 atctacctca gcacttgcac ttgaagcttc acgagctgca aaagtattta ataaacagcc
     1261 tttactcaat aatccaaaaa caaaattatg gagtctcttt gcgattgaac gccttaattt
     1321 aggtgacttt acctttgagt taagtgggcg ggcagaacgt caaaaaatag caatggatta
     1381 tgatgtgaaa ttaattgatc gctggctagg ctttaataca cctatgccaa acttggaccc
     1441 acataaagac aaaggttatt cttatagctt tgcaactcat tggtatttcg caccaaacca
     1501 taagttaaca ttaaatgctg cacatcaaga acgtttacct aatgctcagg aactctatgc
     1561 tcatggtaaa cacattgctt taaatgcatt tgaggctggc aataaaaatc taaaaaaaga
     1621 gcgttctaac caaattgagc tatcattagc ttatgttggc gacaaatggg attataaatt
     1681 aaatctctac cacacccgct atggcaacta tatttaccca ttaactctta atgataatcg
     1741 tggacctaaa tcttttaccg atgaatataa cttgaaagtg aatagatatt atcaaggcga
     1801 agctcgtttt agtggggcag aaggcgaaat tggttatcta tttacaccaa attatcgctt
     1861 agccgtattc ggagactatg tccgtggaaa gttagtcaac ttacctaata ttgcaatgag
     1921 ttacaacatt tggacaggtg aagttgacaa atgggcttct cagccagaca tttctgcacc
     1981 tcgtatacca ccactacgtt taggagcaag atttaatgct gacttcaacc taaactggtc
     2041 tggaatgtta gaatattacc gagtatttgc tcagaaaaaa gtctcgaaat acgaacaagt
     2101 tacccctggc catcatcaag taaaccttgg cgtaacctat agtaatcatt ttaatcaaac
     2161 agaataccaa gtattcctta aagtggataa cttgcttaat cagaaaatgt accaacatgc
     2221 ctcatatcta ccacatattc cacaaatggg tagaaatgca atgcttggaa tgaatatcag
     2281 tttttaattt gtaaatctct acaaaaatat aaccgcttgt aaatttctat ctacaagcgg
     2341 ttactttcag tggatttttt gcaattagag atcgtcaatt accaagtaaa ttttatttac
     2401 cgggccgtga acgccaacta ctttaatcaa ctcaatatcc gcagtcgccg atgggcctga
     2461 gatgatattc acacaagatg gcattctttc acctcgttgg gctttttcgt gcagaatttg
     2521 tgcaagctgt gccacacgag gtaacactgt acttttgcgt aacacaacca ccgatttttc
     2581 gggcaataag ctcactgaac gcccaaattc tttatcggaa aacagtacaa taccgccaga
     2641 ctctgccaag ccatattcac cgtaaaccac accgatatta gcagttctgg ctttttcaaa
     2701 gttggtttca gcttggttga aatcccacac atagctgtct tcgtattttg cttgaatggc
     2761 tgcggtaatc ccaagatcct ttaaacgttg atcgttattc acgatcacac tcgccccgcc
     2821 atatttttca caaatatcaa taatggcttg tggtaaatcc gcctcttttg cctctactac
     2881 atctgccatc atcactcggg caaaatcgat aaactcttgg caaagttgtg gttgagggcg
     2941 atcggttaaa cgggtaatcg cgtggttgtt ttccaacaca ggaattggct caggcacatt
     3001 ttggcgtggt ctgcccatac gctgtgccaa tttatttaag aaattttcac gattttgtaa
     3061 atccattttc ttatcctctg ttattaaacc attcacggaa actttcgcct tcggcagtcg
     3121 gtaaatcacg ggctttcgtc cattcaccta acgccccaaa attcaccggt gctttgccgt
     3181 ttttaatcaa tttgcttgcc actttcgccc ccacttttac gccgactttc caaagggttg
     3241 ggtgtgagtt agcgaagtta aagccaaaaa tagacaagcg ttctgccatt ggcgttaagc
     3301 cggcatccgc aattttctca cggtgtttta agataagctg tgccagtgga attttcactg
     3361 gacaaacact gttacaagcg gtacaaagtg agcaagcata cggcaattct ttaaactctt
     3421 cgtagccacc gagcaatggc gaaataactg aaccaatcgg gcccggatag attgaaccat
     3481 agccgtgacc gccaatttgg cgatacgccg ggcaagtgtt caaacatgca ccacagcgga
     3541 tacaacgcaa cacttcttgg aattcgcttt ctaagatttt agaacgaccg ttatcgacaa
     3601 tgaccaagtg gaactcttcc ggaccatcgg tttcgccttc aagtctagga cctgtcagcc
     3661 aagtgttgta agcggtgagt tttgccccta ccgcactgcg agccagcatg gtaattaata
     3721 catcaacctc tttaaaggtt ggggcgatac gttccatacc cattactgca atatgcgttt
     3781 tcggcacagt tgttgccata cgcagattac cttcgttggt cactaaacaa accgagccgg
     3841 tttccggcac cgcaaagtta cagcctgaaa taccgatgtc tgcctctaag aaatcttcac
     3901 ggattttttg gcggacgaat gcagtcatct cttcaggtgt ttccgaacct tgataaccta
     3961 gcacatcgtg catttcttgg cggattctgt ggcgatcttt gtggattgca ggtacaacaa
     4021 tatgagaagg tttatcgccc acaatttgca ataaatattc gcccaaatcg gtttcaacca
     4081 ctttaatgcc ttctgcttct aaaacgtggt tcatcccaat ctcttcggtt accatcgact
     4141 tcgattttac gattttcttc gcatttttag ctttcgccac gtttttgatg taatcagtgg
     4201 cttcttcggc ggtttcggca aagaaaacgt gtccgccgtt ttgggtgact ttttcgctta
     4261 attggtagag ataagcgtct aaattggcta aaacgtggtt acgaattgct ttcgcatcat
     4321 cacgccactc ttcccagttg cccagctcat ccaccatacg ctgacggttt gcaccgattg
     4381 tttcctgagc cttaactaag gctttacgca caatctcgtt attaacttgc tgctcaacac
     4441 gttgtttaaa cggcagggtg ttagtttgta aataagacat cttattttcc tccctgcatt
     4501 aacacttcgg caatgtgcat cactttgatt ggcttacctt cacggcttaa acgaccgcca
     4561 atgttcatca agcagcttac atctgccccg attaaataat ccggctcatc ggtatctaca
     4621 tttgcgactt tctcttttac catctcgccg gaaatttctg ccattttgac cgagaatgtg
     4681 ccaccaaaac cacagcaagt ttcttggttt ttgattggta ataactctaa ccctttaacg
     4741 tgctgtaata aagcaatagg ctcatcttta atccccagct tacggaataa gctgcaagac
     4801 gggtgataaa ctgctttgcc cggtaaataa gccccaacat ctttcacgcc cagtttgttc
     4861 acaataaaat cggttaaatc atagaaacga tcagccactt tcttcgcacg ttctgcccat
     4921 tctttttcgc caaagcgttc aaaatgatcc ggataggttt tgatcgcata tacacaagaa
     4981 cctgccgggg cgacaatcgg gtaatcatta gcttcaaagg tttcaaccaa gtttttcata
     5041 cctgctaaag cttgcttagt gtaaccgctg ttgatcgcag gttgtccaca gcaaccttgt
     5101 ttttctaaga aagtgatttt acaacctaat ttttccaata aaagcacagt attttttgca
     5161 acccctgctt tcattacatc tgcaatgcag gttacgtaaa aattaacgtt cataaagaac
     5221 tcccacagta aatataaata agaattaaac tcaaaaaatg ccgttctaag acggcgaaag
     5281 gaagaggtgg atttgcaaaa aatttgctaa atctcaccgc ttcctttcta aatcaagtaa
     5341 gctgattatt aactcattat aggttataga acataggtac tataaacaat gccgaaatcg
     5401 cagcaataac gccatacacg aacattggca cggctgtttt cttaataata ttgccttctt
     5461 gtttctcaat gccggtaaca gaacacacag ccacgatgtt gttaatacac accatattcc
     5521 ccattgcacc accaactgat tgcaatgcaa gaattaaggt aacagataac ccgacttgct
     5581 gtgccgttgc atattgtact gttccgaagg ttaagttaga taccgtattt gaccctgaga
     5641 agaacgcacc aattgcacct aagaacgagg caaataatgt ccaagattga ccggtaaatt
     5701 ctgcgaagtt tttaccaatg atctgaacca ttgagtctac accaccaatt aacattaatt
     5761 ttaccatcac aatggcacct aaaagtgcta agaatggttt tttcacttgt ttaaatgaag
     5821 tgccaaaaat ctcttgagta tttttacctg ataccgagaa aatcggtaag caaattaata
     5881 cggtcacaac aaatggaatc aacgcaggaa catacagtaa tttatagcta gttgctacat
     5941 tcgtacctaa aatatttttc agtgcaaaaa ttaagccttg gctaatttca aagttagcga
     6001 aaccaagcga actgacaatc caagctgttg catcatttag cattgctttt aatggaagtt
     6061 gctgaatacg ggtgattacc aaaatgaaga tcagtaaccc tgttggtaat aatgcttttg
     6121 ccacttcacc aaaggtcgct ttatcgccgt caaggtggtt ctcgcttttc gctaaaccaa
     6181 tacccatatt tgctacccag actgacacca ataaaccaat cgccccggca actaatgatg
     6241 ggaattcgta gttaaattga gcaataatga agtaaggaat gacacaggca aaaatgctga
     6301 tataaataaa cacgatattt tgacgaattt ctttccagct cacaattaaa cgcaatgcca
     6361 taactggaat aataaacgca gcaatagagt ggatcagtgc agtaatagaa ccaatttcaa
     6421 gcacttgtgc atcggttagt aaaccatctt ttaataatgg tcccatacca aaccaagttg
     6481 gtgtgccaac cgcaccaaat gacaccggca cagagttcat tactaaggct aacattgcca
     6541 cttgtaacgg tttaaagcct aaaccaacca gaattggagc tgcaattgcc gccggcgtac
     6601 cgaaacctga tgcgccttca atcataaatg caaatgccca accgataatc atcaactgtg
     6661 ccaccggatt cgggttaatt gtccctaacc atttacgcat agtgttggtt gcacctgaaa
     6721 cttcagagaa acggttaaat aaaatcgccc cgaaaataac ggtaattggg gttaatacat
     6781 cacctaaacc ggcaataata ttggcaaaga ttaacgtggt atcattacca aaataggtaa
     6841 gctgaagcac aaaaattaat aacgccgtaa gtggtaaagc cacataagac ggtaacgcgt
     6901 tacgttttac cattaaataa atgagcaaaa caattggaaa tacgctcagg aatagagcca
     6961 tactgcacct ctttatatga ttataaaatg acctaactgg tcggataggt gcgaattgta
     7021 ctcttaaaaa aaactaatgt aactaggttg ttacaatttt gtgatctagc tcgcattttt
     7081 aatgattgta tggttaaaaa agagccatat ttattttcat ttaatactta atagttagcc
     7141 ctatttaaga catttttacc gaatcgagca atatgcaatt aattaacaaa aaaaggccgc
     7201 ttgtagatca cagatcaaca agcggtcttt tttaggcaaa aatttgcaaa ttaaacattg
     7261 aaacggaagt gcattacatc gccgtcttga acaatataat ctttaccttc caaacgccat
     7321 ttacccgctt cttttgcacc ggcttcacct ttattgtcta tgaagtcttg gtaagcaatt
     7381 acttccgcac gaataaagcc tttctcaaag tcagtgtgaa tcacggctgc tgcttttgga
     7441 gcggttgcac ctaccgaaac cgtccacgca cgcacttctt ttacccctgc ggtaaagtag
     7501 gtttgtaagt taagtaaacg gtagcctgca cgaataacac ggtttaagcc cggctcttca
     7561 atgcctaaat cttgtagaaa ttccactttt tcttcgtcat caagctcggc aatttccgat
     7621 tcaatcgctg cacacaccgg tacaaccacc gccccttctt tttcggcaat ttcacgcaca
     7681 cggtcaagat aagggttatt ttcaaaaccg tcttcgttca cgttggcaat atacattgtc
     7741 ggttttaaag ttaagaagtt gtagccctta atagcgtgca gttcatcctt atctaaatct
     7801 accgaacgaa tcataccggc attttcaagc acaggtagga ttttttccat aatcgataat
     7861 tcaaattttg cgtctttatc gccacctttc gcacgttttt gtaaacgctg aatggcacgc
     7921 tcgcaactgt ctaaatcggc aagtgccaat tcggtattga tgatttcaat atcatcagct
     7981 gggtcaattt tccccgcaac gtgaacgatg tcatcatttt caaaacaacg cacaacgtgg
     8041 ccaatcgcat cagtttcacg aatattggct aagaatttat tacctaaacc ttcgcctttg
     8101 cttgcacctg ccactaagcc ggcaatatcc acaaattcca ttgtagttgg taacactcgc
     8161 tcaggtttca caatttccgc caacgcatct aagcgagggt caggcattgg taccacaccg
     8221 gtatttggct caatcgtaca gaacggatag tttgctgcct caatacctgc tttagttaat
     8281 gcattgaaaa gggtcgattt accgacattt ggtaaaccca caataccaca tttaaatccc
     8341 attttttgtt ccttagaatt cccctctccc cttgcgggag agggataaat ttgagcttcg
     8401 ttcagaagcg aaaatgaggg agagggcgaa attgcaataa tttcctcaaa tatgaccgct
     8461 cccctctctc tgaaaaatac ttctgaacga agtatttttc ggtctctctc ccacaaggga
     8521 gagagtttta atttgcttta aaactattta aacggttagt tgccttaacc attccgtctt
     8581 taaataaaac ttctacgcaa cgtgcggctt catcaaccgc actattcagt aatgtctgat
     8641 cgcttggtga aggcttgccc agcacataat tcgccactaa gtctttatgc cccgggtgtc
     8701 caataccaat tcgcacacgg taaaactctt tattattgcc aagggcggca ataatatctt
     8761 tcaagccgtt atgaccaccg tgtccgccgc cttttttcaa tttcaccgaa ccgggtggta
     8821 aatccaattc atcgtgagcg accaaaattt cttccggttt aatccgataa aaattggcta
     8881 acgctcccac tgctttacca cttaaattca taaaagtagt cggcactaat aaacggactt
     8941 cgccttgagc ggtattaatt tttgctactt tgccaaaata tttcggctct tcttttaggc
     9001 taacgttata tattcgggca agttcgttaa tcagccactc gcctgcatta tggcgggttt
     9061 cttcatattt tacccccggg ttcgccagcc cgacaattaa tttaatttct gacacaatct
     9121 tgtctcaatt catttaattt aaaaggcagt attttagaga aaaaccgcta ttttctcaag
     9181 gcaaccatta atcatattgt ctatacggat ttggtacgca ttgatacttc gctaacatcg
     9241 attcagtgaa atcggtgcgt gaagcagcgt tatcattgtt taaactaacc acaccaattc
     9301 gcttgcctct gcaatcccct ttagcaataa aggcaagatt ataacccgcc tcacgggtat
     9361 aacctgtctt actcactaat gcctgatagg attgggaacg aaccatactg ttggtgtttt
     9421 tcatagagaa ataacgacca cctgcataaa cactcactaa tggcgaatta gacaattgct
     9481 gaatttcagg cttacttgcc gcatagcctg ccaatttagc aagatcaacc accgttgaaa
     9541 cattatccga agataagcct gagctatcac caaagtaggt ttgagtcata ccgatttcac
     9601 gggctttgct gttcattcga gccaaaaatt gggctttatt caaatgtgtt gcgtgggcaa
     9661 gggcgtgagc ggcatagtta tcggagcgaa ctagcatcgc ttttaacaat tcactacagg
     9721 caatgttaag atttttcggc aatgggctgg tcgtgccttt taagaaatca gcatctgacg
     9781 gcaaaatttg ggtttggcaa ctcgccccat agcggttttc ttctaagaaa acgactgctg
     9841 tcattaattt tgtgaccgaa gcaatcgggc gaactaaatt gaaattctta ccttccaaaa
     9901 atttcttttg gtttaagtca aacaccacat aagcggaatt ttcggttgga atataagcag
     9961 cggttgcttt aatccgtggt gtgcttttcc tttttgccgg ctgggaggaa caggcgctta
    10021 acaccagagc cgcaatcata acaggaataa attttttcat cataatagat tcatcgataa
    10081 taaagtcaaa gctggttatt ctaccctgtt tccaaaattg tgccaaagca agcggtcgat
    10141 ttttacaaaa tttttgcaaa tctagccgat tttgcaaaat ttccgccaaa tttaaccgct
    10201 tgccctctcg cctcaaatca gcgaaaataa cgcttaattt tttggcggac tttccgccct
    10261 ttttatttta attggttgag aaaaatgtca tacccacaag aagttaataa acgtcgcacc
    10321 tttgcgatta tttcccaccc cgatgcgggt aaaaccacca ttaccgaaaa agtattgctc
    10381 tacggaaatg caatccaaac tgccggctcg gtaaaaggca aaggctcggc acaacacgct
    10441 aaatccgact ggatggagat ggaaaaacaa cgtggaattt cgattaccac ctccgtgatg
    10501 cagttcccgt acaatgattg cttggtaaac ttactcgata caccggggca cgaagacttc
    10561 tcggaagata cttatcgtac tttgactgcg gtagatagct gcttaatggt tatcgactcg
    10621 gcaaaagggg ttgaggaacg caccattaaa ttaatggaag tgacccgctt gcgtgatacg
    10681 ccaatcctaa cctttatgaa caagctagac cgtgatattc gtgacccgat ggagctgtta
    10741 gatgaagtgg aaagcgtgct gaaaatcaaa tgtgcgccga tcacttggcc gattggttgc
    10801 ggaaaattgt ttaaaggggt atatcacctt tacaaggacg aaacctactt ataccaaacc
    10861 ggacaaggtc ataccattca agaagtacga gtggttaaag gcttaaataa tccggaactg
    10921 gatcaagccg ttggcgatga tttagcccag cagttgcgtg atgaattaga gctggtacaa
    10981 ggcgcttcgc acgaattcga tcacaccgaa tttatcaaag gcgagctgac accggttttc
    11041 tttggcactg cactgggtaa cttcggggtc aatcatttcc ttgacggttt aaccgaatgg
    11101 gcaccggcac cacaagcccg tcaatcggac gaacgtgaag tttcaccaag cgaggaaaaa
    11161 ttcagcggtt tcgtatttaa aattcaagcg aatatggatc cgaaacaccg agatcgagtt
    11221 gcttttatgc gtgtcgtttc aggtaaatat gaaaaaggaa tgaagcttaa acacgtccgt
    11281 atcggcaaag atgtggtgat ctccgatgcc ttaaccttta tggcgggcga ccgttcacaa
    11341 gccgaagaag cctacgccgg cgatattatc ggcttgcaca atcacggcac gatccaaatt
    11401 ggtgatactt tcacccaagg cgaaaatttc aaattcaccg gtattccgaa cttcgcccct
    11461 gagctgttcc gccgaatccg cctgcgtgat ccgctcaaac agaaacaact gctcaaaggc
    11521 ttggtacaac tttccgaaga gggtgcggtg caagtattcc gtccgttaat caacaacgat
    11581 ttgatcgtgg gagcggttgg ggtgctacag tttgatgtgg tggtttcacg gctgaaaacc
    11641 gaatacggtg tagaggcaat ttatgaaacc gtaaacgttg ccacagcccg ttgggtcgaa
    11701 ggcaaagatg ccaaaaaatt tgaagagttc aaacgcaaaa acgaggcaaa ccttgcccta
    11761 gacggcggag acaacctcac ctacattgct ccgacaatgg tgaacttaaa cctcgcccaa
    11821 gaacgttacc ctgacgtaca gttctttaaa acgagagagc actaaaacca ataggggcga
    11881 aaaatctttc gcccctacaa ataaagcaca agcggtcaat tttttttccg aattttacaa
    11941 tactaggcat tctgttcctc aaatagccta aatattcccc tatcaacaat ccttatcttg
    12001 agattattct gcctattaat taaccactca aaaataccct cgcagaaaac tctacttttt
    12061 ttatggaaat atgctaaagt tcgccaatat tcatagccct gattttttta tggagaaaat
    12121 aaaatgaaaa aatggttgat tccattaact gtcgcagcgt tctgtgtttc tgcttgcgat
    12181 gataagaaca gcactcaagc aaccgcagaa aaaccgcaag tagagaatac tcaatcgcaa
    12241 aaaaatgcgg aaatattacc gcttgcaacc gtggttgccc catgggaaat caatagcctt
    12301 gacccgaatc aatcaggcgt aattttccag cgtatgaact tagcggaaac attggtcgaa
    12361 gccgatctta acgggaattt aattccggca ttggccactg actggcgcag taacgaagag
    12421 ggaacaatct ggcgttttac cttgcgtgaa ggggtaaaat tccataacga tcaagtactt
    12481 accgcacaag cagtggtaaa tagtttgaat atcgcaaaaa gcaaaccggg tgtgttagca
    12541 aaagccttta tcaaggaaat tcgagcggta gataacaaag tggaaattga gctaactaaa
    12601 gcttttgtgc cgtttcctcc ctttttaaca cactacaccg ccttaatttt ggcacctgaa
    12661 agctataatg aaaaaggcga agtgacccaa attatcggta caggtgcgtt taaacccaca
    12721 aaaattgaag ctccgcagaa attggaagcg gtgcaatttg agggctattg gggcaaaaaa
    12781 ccgcaagttc agcaagccaa ttatttagcc agcagccgta gcgaaacccg tatgttaatg
    12841 gcacaaagcg agccgtcatc actggtattt aatttagata ccgccagtgt agcaaggctg
    12901 aaagccgatc ctaacctgca attagtcagc ggatctattg cccgtactat tcagttgaaa
    12961 atggacgtgg caaagccgtt ttttaacgac ttagcgattc gccaagcctt atcgcaagcg
    13021 attaatcgca aggcgattgc tgagcaggtc ttaaaaattg agaacggagc tgccgatcaa
    13081 attttaccga aagcctttgc cgactggcgt gttgataccg cagaacaagt ggtcgatatt
    13141 gcaaaaatta aacaaaatct gaccgcttcc ggctatacct ttgatgaaca aggtcgctta
    13201 accaaagacg gcaaaccgtt tagctttacc atgcgcacct tctcagatcg tcctgaatta
    13261 ccggtgattg ctactatctt acaagctcaa tggaaacaaa ttggcgtgga agtgaatgtt
    13321 tcggtgggta atttcagcga aattccggcg gggcatcaag acggcagttt agaaatggct
    13381 ctttatgcct taaattatgg caaaacctta gatccatatg gcgtaattgc ctccgacttc
    13441 gccaatggtg gcagtgattg gggggtaatg aattggcaaa atactgaggt agacaatgca
    13501 gtcaaatcgc tcgaaaccga gcgtgacccg caaaaagcga aagcattaaa gcaaacggtt
    13561 agcaaaatta tttacaatga tttgccaatc attccggtgg tttattacca acaaaatgtg
    13621 gtggcacata aagaagtaaa aaatgtgacg ctagatccat ttgaaagacg cttctttttg
    13681 gagttattaa gtaagtagtt taattcaaaa tactcctcgc tttagaaaag ggaaggtagg
    13741 atttttcagt agtaatttgc gctcttaggt gaataaatag tgacagaatt atcgtttttt
    13801 ctcatttttc acctattttc tccgcttatt tcttctgcca aatcttccct tcccctcttt
    13861 gctaaagagg gggatcagaa cgcataaaat catcttttta ataaatgaaa taatacaatg
    13921 cacaaaattc tcttccgccg tcttatccaa attctactgg tgatttggtc ggttggcaca
    13981 ctcacattta tcctcacccg ccaactttcg ggtgatatgg cataccgcat tgctgccagc
    14041 cgctatggtt atgatcaagc agatagtgct gctgctgagg ctgtgcgtgc cgagctggga
    14101 ttagaccaac cttggtggca aagctacttc agctggctaa gtgacttggc tcaatttaat
    14161 ttaggcaaat cattggtgac cggtgatccg gtctggtctg aaattcagca ccaattcggg
    14221 cataccttaa gccttgcgat tgtggcactt atcttagcaa tccttatcgg gcctccgctc
    14281 ggtttgttag ccgcccgtaa gccaaacggc ttttttgacc gcttgacact ggtattcagt
    14341 accctgtttc gctccgtgcc ggcatttatt attgcgattg gcttgattac gctgttttcc
    14401 gctcaactaa aatggctacc tgccggcgga tacggctgtt ggcaacattt tatcttgcct
    14461 gccttaacgc ttgcgattgg cttgagtacg gtttcggtac gagtcacccg ttctgcaatg
    14521 gttcaggtaa aaggctcaga attttaccaa ttttcacaat taaaaggctt aagccgttgg
    14581 catacctttt tacgtcacgg tttgccgaat attgccgtgc cggtcattgc ctaccacgca
    14641 gtacaattag tttatttaat tgaaggcgtt gtggtggtcg aaagcctatt tgcttggccc
    14701 ggcagcggac acgcactggt tcacgccatc attgcccgtg atgtgccgat gattcaaggt
    14761 acaacgctcg tgatgggcgg attgtttgtt gtattaaaca ccattgccga tctattaagt
    14821 gcttggattg acccacgaat taagcgatag gacatcaaga tgaaaatttc aatttcacaa
    14881 tatttaggcg gcactattct ccttgcaatg ttgggatttg cctttttaca gccttatttt
    14941 tacccgatgg atattggctt tcaagattta accaatatcc tttccaatcc aaatgaaatc
    15001 gcttggttcg gcaccgatca tctcgggcgg gatatgcttg cccgtcttgc ctctgctatt
    15061 cgtctttcgt ttggcttatc actgtttagc gtgatttgtg ccttaattgc aggcttaatt
    15121 accggcatta tggcaggctt tttcggtggc tggattgacc gcattttcag ctttatttgt
    15181 gatctagtga tggcactccc cggcttactt ttagtattgc tctttgccgc cctttctccc
    15241 ggctcatttt ggacgctcta tttagggatt tcattggtaa tgtgggtgga atttttccgt
    15301 gtgatccgct ctatcagttc aacaatggca aacagctcgg aaattcaagc ctcacgccta
    15361 atgggaatgg gctggtttta tagcttcaaa cgccacttat tgccccgttt attaccgatg
    15421 attgccactt tatcggcatt ctcgctcggc aatgcgattt tagctctcgc cacacttggc
    15481 tttgtcagcg tagggcttcg cccgcctaca gcagaattag gcttgatgat gaccgaacta
    15541 ttcccttact actacgaagc accgctgata tttttgcaac cagtggttgc cgttttctta
    15601 atggtactca gcttacaatt attgtctaga aaaattaaat aatgcgtagg ggcaggtcct
    15661 gtgcctgccc aaaattctta ttatatttat gggcgggcac agggcccgcc cctacagtaa
    15721 taaaatgaag atgaaattac tcgatatcca aaacctatct gttgaaaccg aaaacagatt
    15781 acagctggtc gaaccgatta gcctacaatt aaaggcagga aaaaatatta ctatcttagg
    15841 cgaaaccggc tcaggcaaaa gcctgctgat tcaagcgatt atgggggcgt tacccgacgg
    15901 cttaatcgca agcggtgaaa tttcggtaaa aaattgcaaa atttccaccg aatccgaccg
    15961 cttgcaaaca ttgtggggta aaaccttggt aatgctgcca caagagcctc gccgctcgct
    16021 taatccgatt atggcaatcg gcaagcagtt gtgggaaagt tttcactatg tggcaggcaa
    16081 accatcatct caagccaaaa cggaaagcaa agcctattta gccaaacttg ggctgggcga
    16141 atcggttgaa aactacccac accagctttc cggtggaatg gctcaacgtg cctcttttgc
    16201 gattgcaact gccgccggtg gcaaaatttt acttgccgat gagccgacca aagggcttga
    16261 cccaatcagt aaaggcaaag tgattgaact gttaaaatcc gcctaccaaa acggtggagg
    16321 cttgctcacc attactcacg atattgaagt tgccgagcaa ctcggtggca ctattttagt
    16381 gatgaaaaaa ggcgaactgt tggagcaagg tgaggcaaaa gcgttgttaa ataacccaca
    16441 acacccttac accaaagcac ttatcagtgc cgatccaaaa cattggcaac cattgcaaga
    16501 tctgcaaaat ttaagccaaa aacaaccgct tgtttcggtt aaaaatttga gtattgcccg
    16561 tggtaagaaa acgctgttta gcaacctttc ctttgactta cacaaaggcg aagtgcttgg
    16621 gattgtcggg catagtggga ttggcaaaag ctcgcttgcc gatgtacttt gtggtttgct
    16681 taagccgaaa tcgggcgagg ttgtgtggca cagccacagc cataaaaaac accaagtgtt
    16741 gaagctttac caagacccac cggaagcctt tgctccgaat gtcagtctaa aaaccttgct
    16801 tgatgatgtg attaacaagc accaattaga tcgactgccg attccaagtt tactgcaaca
    16861 actttcgctc aacccagaaa ttttgcaacg caatgcggaa aatgtctccg gcggcgagct
    16921 acaacgagta gcaattttgc gagccttgct cttagaaccg gtactactgt ttgccgatga
    16981 agtcacttct cggcttgacc caatcacaca acaagaaacg atagaattgc tgatcaacca
    17041 gtgccgagcg agaaattgca gtctgatttt ggtcagtcac gatccttatc taattgagaa
    17101 atcgtgcgat aaagtgatta atttggaaga gtatgtgggc taacaagcgg ttcaatttct
    17161 gagatttttt gcggctctaa aaacaaaaat gcgaagacat cagttcttcg catttttctt
    17221 acttattcct tattgcccag ccagcttctg ccgtacaatt tcaaacagac agaccccggt
    17281 tgcaactgag acattcaaag aagatactga gcccgccatt ggaatgctga taagctggtc
    17341 gcaatgctca cgggtaaggc gacgcattcc gtcgccttct gcccccataa ctaacgcaat
    17401 cgagccggtt aattttgctt cataaatgcc cgattccgcc tcacctgccg tgccgacaat
    17461 ccagacatta tgccgttctt gtaaatctcg cattgtgcga gccagattgg taactcgaat
    17521 cagtggcatc acttccgctg ccccacaggc gactttgcga gcggttggtg taagctgagc
    17581 agatttatct ttcggcacaa taaccgcatc aacccctgcc gcatcagcgg tacgcaaaca
    17641 agcccctagg ttgtgagggt cggtcacgcc atctaaaatc aacaagagtg gatttttctt
    17701 ttggcttaag atcgcctcta aatcgtgttc attcagctct ttttgtggca cgactctggc
    17761 aataatccct tgatgcactt caccttgcga tttgttatct aaggtttggc ggttcacttg
    17821 ttgaattgcc acccctaaac gttgtaattc atttaatagt ggcattaagc gtttatcttc
    17881 acgccctttt agcaccagca cttcaattaa acgctcaggt gcattatcca aaaaggcttt
    17941 cactgcgtga atgccataaa tttgttcgct catattttat ccttaataat tgggcgaacc
    18001 catcagctcg cccatataaa tacctaacta aagcaacatc ttcacaattt tatccaactt
    18061 aaccctgccg aattttttca gcaatttacg cacattttca gggtaatcgg ttaaaacttc
    18121 caaatcactg tagtgagtta aaatctgcgt atgttggcaa atttggttta actccgtttc
    18181 tgctttttca cttaattgat gttgaggatc ggaaattaaa attgcatttt cggcatctaa
    18241 ccgccacgct cttgggttaa ggttattgcc ggtcagcaaa atatagcggt tatccaccca
    18301 aacccctttt aagtggtagc tgttttcgcc atctttccat aagcgaatgg ttaactgttt
    18361 attttgtaca taaccgtcca accgttttgc aaaggctcgt aagttctttt catacaaata
    18421 aggcagagcc gatgccatcg tgaatttttc gtccggcttg gtgtagaaat cattagcggt
    18481 tttatccccc acaataattt caaccgattt gccgtttgcc aatagccatt caatacgggt
    18541 tctcagagaa tgcggaaaat taaaatacgg agtgcaaatc gttaatttct gctcagtttg
    18601 ataaaacaac gcttcaatca ctttatttaa ctgattctta cgtcgcccta agcctactaa
    18661 aggagaaacc gctaagcgac cattttcagc aacaccgtta aataaatacg cttcccgact
    18721 taattgtttg cggaaatgct taatttgcgc acgaatttca gccgttttcg ggcgattttc
    18781 cgtatctaaa cgttttaccg cttcattggt taaaagatgc tgttgaataa acgtcaccca
    18841 gctatcggca agaactttat tttcaatgac gtggtaacgg tcataacggt aacgttcaaa
    18901 ttgatgcaaa tacacattat taatgcttgc tccgctatac aaaatcgtat cgtcaaatac
    18961 gaagcctttc aaatgcaata caccaaacac ttctcgtccg ttaatcgaca caccgtaaaa
    19021 ggcaatctct tgccctgccg gtaaaccttg ttcgtattta acttttgcat accagtcggc
    19081 gttagataaa ttctctgcct caccaatacg cccacgttgg gctcggtgcc aatcaaccaa
    19141 aatgttaatt tccagttcag gattatttcg cttcgcttga tataaagcag ctaatacttc
    19201 ctgcccggct tcatcttttt caaagtaaag agcggttata taaatacgct tttttgccgt
    19261 ttgaatcagc tgtaaaattt gttgtttaaa cgctttgctc gaggcgagaa actgaacctg
    19321 ctctgccact tgtggtaagt atggcaggct tttcaatagg tattcagctt tacgttgttt
    19381 gttcaaaatt aacatcattg attccaaaat tttcaatcgt tgcctgctat tttacactga
    19441 aatcgccaat aaagcgattt tcgcttaacg gcattgatag ctggtcaaac gattaggatc
    19501 ttctccggtt tgataaattg cgactttcgg ataagcacaa agcgggatct gcttggcttt
    19561 attagggtaa agctcaccgg ctttggcggc aatactttcc ggctccagtc ctttctcaac
    19621 ccaattttca agggcagtga gcatatcaaa atcattcacc gttgcccctc gcccacaatg
    19681 gttcattgcc gacacgaaaa acaattttgc aaaatgttgc ggattttcga ccgcttgttg
    19741 taggctttga taccaatttt tgagatcaac tgccgaaaaa atcgggtctg aaacgccttg
    19801 ataaatcagc attttgccac cgttctgctt aaaagcggat aaatcaactt gatctgtatc
    19861 gtgaatgctc cctaccgctt tcacttgttc gctggcttga tccaaatcta cgctgagtgg
    19921 atcacggctc ggcactctgg gggctaaata gtaatgggtc aaacttttca atcccatttt
    19981 aaaactaatg ctgttgggct gagcggtttg gctatcacct aatttccaat cccgccagcc
    20041 tttagcgtta atgccggaat catacgccca agggctataa atcagctcgc ctcgactgtt
    20101 tttcgccccc tcgaaaatcg ttttgattaa agcgactttt ttctgcccca gttgctttgc
    20161 caccatttcc ggctggaaat cacactgttc ccacgcatta attaaaccgt ctgctaagcc
    20221 gtctaactta tcgcaacgtg ttaatacgcc attggcaatc acatctaaat cttgttgagt
    20281 gagggcttgg gataaaattt tgtcgccatc accattcttc ggagcaactg ccaacaaggc
    20341 tcgattatcc catacttccg ccaagactga acgggaaacc cgaaagccgg ggctgcctgc
    20401 aatcacaccg tcaaattcct gtggataacg cattgccgcc atcatcgcct cacgaccacc
    20461 attcgagcag cccataatgt aattgtgctt gctcggtttt cggtaaaatt cggcaatcaa
    20521 ctgcttggca accgtggtca ctttgccgat agaggcatag gcataatttg agcgagcttc
    20581 gggatctgcg gtaaacacta aatctcgagt ggcgtgacca ctgtcgttac tcactactgc
    20641 atagcctctg tttaagccat ttgcaccact cgccccgtgc ggatagagct taccaatggc
    20701 agggaaaatc accccaccta caccgcccgc cccctgaaat aagaattttt cattccattg
    20761 ttcgggtaaa cgtagctcaa attgaatacc gtaaggaaca ttatccacct ccacccgttt
    20821 tccaatttca ccttgtacta aacagtaagc cggcaactca gcagatttct caacccattc
    20881 agctttataa atagccgttt tttccggcga gttagatttt aacgcgacac attgttcagc
    20941 catagaatta gccaaagcag tgtgagaaaa aacggagaga aaaataaaaa gaaaagcgat
    21001 tattttcatc atttacatca atacaagcgg ttatttttcc gaaaattttt gcaaatttta
    21061 aactgagtgt ctatctatcg ctggaaaagc taaggcagag tttcctctgc cttagaaaga
    21121 tgaattgaat tacattttaa gcaaacaagc gtttttcgcc ttcgccggct acgttttcca
    21181 cacaacgtcc gcaaacttct tcgtggccag agtgcgagcc gatgtcggta gcataatgcc
    21241 agcaacgagg gcatttctca ccatctgcat tttccacttt tactgcgagt ccggctaatt
    21301 cgccttccgc aatatctgct tccgccagtg gtttaacaat cgcttgtgag gtaatcagca
    21361 caaagcgtaa ttcattgcca agttgttcta ataacgggcg aatttcatca ttggcgaata
    21421 ccgtcacctt ggcttctaag ccagcaccaa ttactttgtc tttacgggct tgttccagca
    21481 cacggttgac ttccgcacgc acttttaaga tttgttgcca gtaagcatca tctaatttat
    21541 cttgctcggt taaaccgaat aatccggtgt agaattcttc ggtaaagaca aattcacttc
    21601 tgccttccac ctgcggtaag tagccccaaa tttcatcggc tgtgaaggat aaaatcggtg
    21661 caatccaacg tactaacgct tctgcaatat gccataacgc tgtttggcag ctacggcggg
    21721 caaggctgtc ggctttggtg gtgtattggc ggtctttgat aatatctaag tagaaagacc
    21781 ccatttcaat cgagcagaaa cgcattaaac gctgtactac cgtgtggaat tggtagttat
    21841 cataggcttc tttgatgtcg ttttgagcct ctaaagcaca agccaccgcc cagcggtcta
    21901 aggcgatcat ctcttgcggt tgaactaaat cactttttgg atcgaaaccg ttcaagttcg
    21961 ccaataagaa acgggctgtg ttacgaatac ggcggtatga ttccccggca ctgtttaaaa
    22021 tattgtgcga aacggtaatc tcaccggtat agtcggtgga ggcaacccat aagcgtaaaa
    22081 tatctgcacc gtttttgttc cacacttcac ttggcacaat tacgttgcca agcgatttgg
    22141 acatttttct gcctttctca tctacggtaa aaccgtgagt tagcacttgt ttgtatggtg
    22201 ctttgccgtt agtagcagtg gaaagcatta aagatgacat aaaccaacca cgatgttggt
    22261 ctgaaccttc taaatacata tccgctgaat tgccgttaaa ttcagggcgt tgttctacaa
    22321 cagaggcata ggtcgatcct gaatcaaacc acacgtctaa ggtatccggc actttgcggt
    22381 aatctttggc ttcttcaccg agcaattccg caggatctaa atcccaccac gcttgaatgc
    22441 ctttttcttc tacacgtttc gccacttctt caattaattc taaagtgcga ggatgtaatt
    22501 cttcggtttc attatgcaca aacatcgcca ttggcacgcc ccaagtacgt tggcgtgaaa
    22561 tacaccagtc tgggcggttt gccaccatcg tatcaatacg agcttcaccc cagcttggga
    22621 tccaacgcac cgatttgatt tctcctagtg cttgctggcg taagccttgg gtttccattc
    22681 cgataaacca ttgtggggta gcacggaaga taatcggggt tttgtgtctc caacagtgcg
    22741 gataactatg cttgatgcgg gataatttta ataatgctcc cacttcttgt aatttttcga
    22801 ctactttatc gttggattca aacacaccta agccggcaaa gaacggggtg tctgctttga
    22861 atttaccgtc attggaaatt agccctgcca tttcaatgtt atatttgcga gcgaccacga
    22921 agtcgtccgc accgtgatcc ggtgcagtat gcactaaccc tgtaccaccg tctgtggtaa
    22981 cgtggtcgcc aaaaataaat ggcacgctgt aatcatagaa tgggtggtta aagcgtaata
    23041 attctaagtt ttcgcctttg gtggttgcta aaatctcagc agattcaacg cctgctgctt
    23101 ttgcaacatc ttcgactaaa tcgaccgcta gtaacacacg ctcatcacct aattggacta
    23161 aggcatagtc taattcaggg ttgatcgcaa tcgcacggtt agacggaata gtccaagggg
    23221 tagttgtcca aataaccgca gataatgccc ctctaccttt accctgtgcg ttgaattttt
    23281 cttctaccgc atttacgtcc acagcattaa aacgcacata aatagaggga gaaactttat
    23341 cttcatattc cacttcagct tccgctaacg aagatccaca atctaagcac caatgtaccg
    23401 gttttgaacc tttgtataaa tgcccgttcg caatcacttt gccgagcgtg cgaataatat
    23461 tcgcctcagt gttaaaattc attgttaggt atgggttatc ccaatcacct aaaataccca
    23521 tacggataaa atcggctttc tgaccttcta cttgttcttt cgcatagtca cggcacgctt
    23581 ggcgaaactc ggcagccgaa attttctcat ttggtttacc aacaatccct tctactttca
    23641 gctcaatcgg caaaccgtga cagtcccagc ccggcacata aggggtatcg aaacctaatg
    23701 cggttttcga tttcaaaatc atatctttta aaattttatt cactgcgtga cctaagtgaa
    23761 tattaccgtt agcatacgga ggaccatcat gcaaaataaa ggttttcttg cctttcgagg
    23821 cagtacgaat tttttggtat aaatttttgt cataccaatt ttttaacata tcgggttcac
    23881 gtttcgcgag atccccacgc ataggaaagc ctgtttcagg caagtttaag gtgtttttgt
    23941 agtcaatagt cattttttta tttctcgtta aaattatctg ttttatgcct agcacggcat
    24001 agccgtacta ggttaagcat agctcagccc ctctggggct ggaaactaga aaggctcacc
    24061 ttgcaaattc cttaaaaaat tcaaccgctt gcaagcgatc tttctcaatc tgggctttta
    24121 gtgcttcaaa gtcgggaaat tttatttcat tgcgtaattt ttttaaaaag atcacttcaa
    24181 tcgcctcacc gtaaatagag gcattgaaat caaaaatatg cacttctaat aacggcttag
    24241 taccgttaat ggtcgggcgg ttgccgacat tggcgattcc gttaaaactg ccctgtttgg
    24301 tcttcacttt taccgcaaat accccttgaa tcggcgtaac caaacgattg agcataatat
    24361 ttgcggtagg aaaaccaatg gttctgccga gtttattacc gtgtgcaacg cgtcccagaa
    24421 tcgaataagg cttgccgagt aatttctctg ccaaatctaa ctcattgttt tgtaaggctt
    24481 ctcgcactaa tgagctgcta attctttctt cgtttaagct atgggtatgg ctttcttcca
    24541 ccgcaaagcg atattttaag ccggcattgc gtaaagtttc aaaactgccc gcccgttttg
    24601 ccccaaagcg aaaatcatcg cctacactta aatagcgtac tttcagtctt ttagcgagca
    24661 aatcgctgat gaaatcgtct gccgaaattt gagcaaattt ttcactaaaa cgcacgcata
    24721 gcacaaaatc cacaccggct tcttccaaat attttagctt atctcgcagg cgcattaagc
    24781 gggcgggcgg gttacaagcg gttgaatttc cacttttttt tgcaaaaaac tctcgaggtt
    24841 gtggctcaaa taacatcaca actgagggca atcctaaatc taaagctcta tcacaaagac
    24901 gagccaaaat attttgatgc ccaagatgca caccatcgaa attcccgata gagagaacac
    24961 agccttgatt taaagcgatg tgtttgtcta agttgtggaa acctcgaata agttgcataa
    25021 aagataaacc attttataag tgaaaattgc tgtgattata acgagaaatc tacaaaaaag
    25081 gaaaaaaatt caatctgtta tattttttta gtgctgaaag tggtcgtgta gctaattatt
    25141 aaagcaaaga tatgctataa aactgctatt tatacaataa aaatatattc aaatgctaca
    25201 ttttactata tgataatcat caaaaaatcg agggaatcat tatgacagat tttgcttatc
    25261 ttcaacaaaa gcgcaaacag cttaaactca aagtgaatga tatttgtgaa caagctgggg
    25321 taacccgagc ttattttaat cagttagtaa gcggaaaaat caaaaatcca agcgccaata
    25381 agcttaaagc cttgcattcc gttttagata tcgtagaaga tagcaaccag cgttccgggg
    25441 ttatttttgg caaattctat cctattcaca caggtcatat taatatgatc tatgaagcat
    25501 ttagtaaagt agatgtttta catgttattg tttgtaccga ttctgaacgg gatttacgtc
    25561 ttttccagga aagtaaaatg aaacgaatgc cgacaaatga agatcggcta cgctgggtac
    25621 agcaaatttt taaataccaa caaaaacaga tctttattca ccatttagtt gaagacggta
    25681 ttccgagcta tccaaatggc tgggaagatt ggtctggtcg tgttaaagcg ctatttgaag
    25741 aaaaaagcat taatcctact attgttttta gtagtgaaat tcaagataaa gaatcttatg
    25801 aaaaatattt gaatctagaa gttcaacttg tcgatcctac tcgtgaatcc tttaatattt
    25861 cagcaacaca aattcgtaat aatccttttc aatactggcg ctttattccg aaagaagttc
    25921 gtcctttctt tgttaaaact attgcgattt taggtggtga aagcagtggt aaatcagtgt
    25981 tggtgagcaa attagcgaat gtatttaaca ctacctctgc ttgggaatat gggcgtgagt
    26041 ttgtgtttga gcaacttggt ggcaatgaac aagcaatgca atattccgac tatccgcaaa
    26101 tggtgcttgg acatcaacgc tacgttgatt atgccatgaa acatgctcat aaagtggcta
    26161 ttattgatac cgattacatc acaactcaag cgttctgtat tcagtatgaa gggaaggctc
    26221 acccgtttct ggattcaatg atccgcgaat atccttttga tgtgacgatt ttactttcta
    26281 acaatacaaa atgggtagcc gatggtttac gcagtttagg atcgaaaaaa cagcgtcaac
    26341 agtttcaaca cctactgaaa aaactactag aaaaacacca tattccttat attaaaattg
    26401 aatctccaag ttatttggat cgctacaatc aagccaaaga ggtggtagaa gctattttaa
    26461 atgaagaacc aatcccatta cagtttaagc aatataatat tcacgaattt gaataactgc
    26521 cacaggaaat aacatgatac tttttgcagg cgatccacac ggtagctacg agcatcttta
    26581 tccgattcta caacagcaga cggaggaggt agctttagtt attctaggcg atcttcaatt
    26641 gactactcct gatgaattag atcggctttc gcagtattgt gatatttggt ttattcatgg
    26701 taaccatgac agtaaaaccg ttgctgcctt tgatgctatt tggaatagta gctggaaaga
    26761 acgcaatatt cacggtaaag tagttgacat tcaaggaata aaaattgcag gtattggagg
    26821 ggtcttccga ggtcatattt ggatgccgcc caatcgtcca atgttttttg atcccatcca
    26881 tttttgccaa tactctgctc cggaaaaaat ttggcgtggt ggtattccat taaggcaccg
    26941 ctcttcgatc ttcccttctg attttgaagc attggaaaat gaaaaagccg atattttaat
    27001 tacacacgaa gcaccaaagc cacaccctca aggcttctct gtaatcaacc agctagcaag
    27061 aaaattaggg gcgagcaaaa ttttccatgg ccactaccat gataatttta attatggcaa
    27121 tctaaatgtc agcagagaat gtgctattta taatatcggc tttcgtagcc tagcggatat
    27181 taatggaaat tatctaattt taggtgttga tgatcgagag aaatagccaa aaatttgact
    27241 gaattaaaca aattgtcatt ttacccttcc cattcataaa tttataagta aaatgcgaga
    27301 aatttgtaac ataaacgtta ttaaacagaa tttataaatt aaatcagagg tttaaaagat
    27361 gaagatccca caaatcttaa ttgttgagga tgagttagta acaaggaata tgctgaaaag
    27421 catttttgaa ggagaaggat atcaggtatt tcaagcatct aacggcgagg aaatgcactc
    27481 tgttctgagt acaaatgaaa tcaatcttgt gctaatggac attaacttac cgggaaaaaa
    27541 tggattaatt ctcgcccgag aaattcgaga gaatatgaag ctaccattaa tgtttttaac
    27601 cggtcgcgac aatgaaattg ataagatcct cggtttagaa ataggtgccg atgactatat
    27661 cactaaaccg tttaatcctc gagaattgac tatccgagcg agaaatttat tgcaacgaac
    27721 gatgatagat aaagaaaacg acgttgtaaa agagcaatct gaaattgaaa gctatcgctt
    27781 taacggttgg atcttagaca ttaacagtca tagtttaatc tcaccagaag gtgaggtaaa
    27841 taaattacca cgtagtgaat ttagggcttt attacatttt tgccaacatc ctggaaaaat
    27901 tcaaacacgt gaagatttat tgaaaaaaat gaccgggcgg gaactaaaac ctcatgatag
    27961 aaccgttgat gttactattc gccgtattcg taaacatttt gaagaccacc ccaatacccc
    28021 agaaattatt gtcaccattc acggtgaagg ctaccgtttc tgtggtaaca tcgaacctta
    28081 atcaagatag gagtaatttt atgaaaaaat taactattgt cgcattaact tgcttatttt
    28141 ctacccatct attagccgct cctgtcggaa atacatttac tggcatcggt gtcggtgtag
    28201 atgtaactac aacaaaatac aaagttgaag gagtaaaagg caaggattcc acaggtccgg
    28261 cattagttgt cgattatggt attgagcaag gcaataactt tgtaggcgtt gtacaaggaa
    28321 aagcaaaagt aggtagtaca aaagtattta gcgatgtaaa acaaaaaaat aaatatacta
    28381 tagcttatca acaaggttat cgtgttggat ccgatttatt accttatgta aaagtagatg
    28441 ccagctcaag caaaatcggt aatgaaacct atcgtggctt tggtttcggt gctggtgcaa
    28501 aatatgcagt ttcaagcgat gttgaattag gtgcagaata cactcgcgat aatttaaaac
    28561 gtagcggcac aaaattaaaa ggtaacgctt tcaccgcgaa tgcaacttat cgtttctaat
    28621 cttagcggta aagttttctg aaaaaataac cgcttgtaac acaaaagagc ctgaagtgat
    28681 tcaggctctt tgccttttaa tataatactc gggctcgaat cgtgccttcg atcgctttta
    28741 aacgttgtaa tgcttcatca acattgtcgc tctctacatc aattacaaca taaccgatag
    28801 ctgcatcggt ttgtaaatat tgagcggcaa tattcacatt tgattccaca aaaatctggt
    28861 taatttgatt taacatacct gggcgattct cgtgaatatg taataaacgt ttggtattag
    28921 tatgaagcgg taaggatact tcagggaaat tcactgccgt cacggttgaa ccgttatctg
    28981 aatatttcac aaatttattg gcaacttcgg tgccgatatt tgcctgagct tcagaggttg
    29041 aaccaccaat atgtggcgtt aaaatcacgt tatcaaactt gcacaatggt gacacgaacg
    29101 ggtcattaat tgatgccggt tcttccggaa atacgtcaat cgccgcacca cgcaatgagc
    29161 cgtcttcaat ccgagcggct aatgcgtcta aatcgaccac tgtaccacga gcggcattaa
    29221 ttaacaccga gccttctttt aattgagcaa tgcgttctgc actcattagg tttttagtcg
    29281 agtcgatttc cggaacgtgt agtgaaatca tatcgcaggt tgaaagcaaa tgctctaatg
    29341 tcggcacttg ctgtgcatta ccgagtggta gtttgttttc aacatcatag aaataaacct
    29401 gcataccaat ggcttcggca agaatactaa gctgtgaacc gatatgacca tatcccacaa
    29461 tacctaattt cttgccacgt acttcgtttg cacctgctgc cgatttattc cacaccccac
    29521 gatgcacttc cgcatttgca gtcgggactt tacgcattaa taaaatcatc tctgccagca
    29581 ctaattctgc caccgagcgg gtatttgaga acggtgcatt gaataccgga atacctcgtc
    29641 ttttcgccgc attcaaatca acttggtttg taccgataca gaaacaacca atcgcaatta
    29701 atttcggagc ttgagccagt acttcttcgg ttaaaaaagt acgcgagcga ataccaacaa
    29761 agtgtgcatc tttaattgca tcaattaatt cttgaccgtc taatgctttt ttatgcactt
    29821 caatattggt ataaccagcc gctaagagta catcaattgc gttttgatgt acgccctcaa
    29881 gcagaaggaa tttgatcttg gatttatcca aagaaatttt agccattttt tgctcctaag
    29941 tatttgtatt tgcaataata aattattcta aaataactgc accttcaggt gtgccgacaa
    30001 tggttacatt ggcaaaacgt tgtgcaaaaa taccgttagt caccacgcct gcaatattat
    30061 taatggtatg ttccattttc aacggctcca taattttaaa gttatgtaca tctaaaatca
    30121 cattgccgtt atcagtgacc acgccctcac ggtattccgg cgaaccacct aaggctacga
    30181 gctgacgagc cacataagaa cgagccattg ggatcacctc caccggcaga gggaaagttg
    30241 aacccagcac atcaacttgt ttggatttat ccacaatgca gataaatttt ttcgctaatg
    30301 aactcacgat tttctcacgg gtaagtgctg ccccgccacc tttaatcatc gccccttgtg
    30361 gcgtgatttc atcagctccg tcaatataca catctaattc cgtcacttca ttggcactga
    30421 atacttcaat gccgatatca cgcaaacgct gttccgaggc tttagaggca gcaaccgctc
    30481 ctttaatctc atctttcatt gaagcaaggg catcaataaa acagtttacg gttgaaccac
    30541 ttcccacccc aacaatagtg tccggtttta caaattttaa tgcagcttgt gccgcaattt
    30601 ttttcatttc ttgttgatcc atttttacct ccacttgtag ggcaaatcat catttgccca
    30661 cttcggcaag gcgaaaaaaa ttttcgccct actacatcta ttctacacat atatgtaaca
    30721 agcggtcata tttggcaaat tttttaccaa aaacgaccgc ttgtcattag ttacgtttta
    30781 ctgcttcaac aatctcttcc gcacagcttt gagcaagtac agcatcttcg cactccacca
    30841 tcactcgaat taatggctca gtgcctgatt tacgcaataa aatacgccct ttgcctgcca
    30901 agcgtttttc cacatctgcc gctaccgctt tcacttcgtt actttcaagc ggatttgccg
    30961 cccctttctc aaagcgaaca tttagcagaa cttgcgggaa cagaggcact gcttttgcca
    31021 aatcattcag gcttaatttg tggcttgcca ttgctgctaa tacttgcagt gaggcaataa
    31081 taccatcacc ggtggtgttt ttatctaaca cgataatatg cccggagttt tcgccaccca
    31141 gtttccagcc tttttcttta agctgctcta gtacatagcg gtcacccacg ttagcacgag
    31201 agaatggaat ggctagctct tttaaagcta attccaagct catattactc attaatgtac
    31261 cgactacacc gccttgtaat ttgcctgaac gtagagcttc tcgggctaaa ataaatagaa
    31321 tttggtcgcc atcaacttta ttgcctaagt gatcgaccat aatcaaacgg tcgccatcac
    31381 catcgtaagc tagaccaaca tccgcacctg cttctaccac cactttttga agtgctttaa
    31441 tatccgttgc accacatttt tcgttgatgt ttaaaccgtc cggcttagta ccgatttcaa
    31501 gcacttctgc ccctagctca cgcattacat tcggcgcgat atggtaggtt gcaccgttgg
    31561 cacaatccac cacaatttta tagccttcaa ggcttagttc agacgggaaa gtgcctttac
    31621 aaaactcgat ataacgtcct gcggcatcat taatacgact ggcacgacct aaatttgctg
    31681 aatctacgca atccataggc ttatcaagca ttgcttcaat cgcttcttca atttcatcag
    31741 gtagtttttc accaaccgac gagaagaatt taatgccgtt atcgtaataa ggattgtgag
    31801 aggcagaaat cacaatgccg gcttccgcac ggaaagtacg ggttaaataa gcaattgccg
    31861 gagtcggcat cggaccaacg aatactgctg ataaaccggc tgcggttaaa ccggcttcca
    31921 gagccgattc caacatataa ccggaaatac gggtatcttt accgattaat acttttttcg
    31981 tgccttgggt tgccaacact ttacctgctg cccaaccgag ttttaatgca aattcaggtg
    32041 taattggaaa tttacctact tcaccacgca caccgtctgt gccgaaatat ttacgagcca
    32101 ttctaattcc taagattgat aaaaatttac tttaaaaaat attgatatgc cggactttcg
    32161 ctcacatttt ggaagcggta acctagctgt tctaaatgtc ggtttaattc tacttcatcg
    32221 cctctgttta atgcaaatgc ggcaagaata tcgccataat cggctccgtg agctcggtaa
    32281 tggaataacg agatatccca gttagtcagc atttgtaaga attttagcaa tgcccctttc
    32341 tgctctggaa attcaaagct atagagttgc tcatattgaa tggagcttgc tctaccgcct
    32401 accatataac gaatatgggt tttggcaata tcatcgtccg ataaatctgc cacatcatag
    32461 ccgttttgtt gcagatcttt aataatctct actttttctg ccgagcctga aattcgcacc
    32521 cccacaaaaa tacaggcttg tttatcatcg gaatggcgat agttaaattc cgttaccgca
    32581 cggttgccta aaatctcgca gaattttaag aaactacctt tctgttcagc aatggtgact
    32641 gccaataaag cttcacgttt ctccccgatt tcacaacgct ctgacacaaa acgtaaggtg
    32701 tggaaattca cattcgcccc ggaaagaatg caagctaagt ttttatcttg taattgatgc
    32761 tctttcacat attttttcaa accggcaagg gaagttgccc cggacggctc ggaaatcgca
    32821 cgcacatttt caaaaatcaa cttcattgag gcacagattt catcattatc caccaacacc
    32881 acatcatcaa catattgctg acacaggcgg aaagtttcat cgccaatgcg ttttaccgca
    32941 ataccgtcag caaaaagccc aacccgttct aaatcggtcg gttgcccttg ctttaaggcg
    33001 tgatataagc aagcagaatc tttagattcg accccaatca ctttaatatt cggcatcacc
    33061 tgcttaatta aaaccgcaat gccggcaatt aagccgccac cgcccactgg aataaataca
    33121 taatctaaat ccggcttttg ttgcaccagt tctaagccga ttgtgccttg ccctgcaatc
    33181 actgccgggc tgtcaaacgg gtgaatgaag gtcataccca attcggtgga aagctcaatc
    33241 gctttcgcct tagcttcatc aaaattcgcc ccataaagca acacttcacc accatagcca
    33301 cgtaccgcat caaccttaat tgccggtgtg ttttgcggca ttacaatcaa ggctcttaaa
    33361 cctaaatgtt tggcagaaag tgccacccct tgtgcgtggt tgcctgctga agccgcaatg
    33421 actccagcct ctttttgtgc tttggataaa tttgagatca tcgcaaaagc acctcgcaat
    33481 ttaaagctgt gaaccggctg tcggtcttca cgtttgataa aaatagagtt gcctaaccgc
    33541 tcagacagtt tttccatttt ctgtaaaggg gtcacttgcg ctaagtcata aatatttgag
    33601 cttaaaatcg agcgtaaata gtcgatagcg gattgggaat gttgtgtttc gttcatcatt
    33661 ttgaaaggtt atttattgtt agattgagat aaagacattg gtaaatttcc aaggaaaatt
    33721 gaccgcttgt ttggttattt agcaatggct ttaacaggga atatttcctc tcgcccgttt
    33781 gcgggagaga gacagcttaa aatttcgttc agaaatttta agcagagaga ggggaaacct
    33841 tggatatccc cctctccctc cgcaaatctt cgatttgctc caccctctcc cgcaagcggg
    33901 gagaggggaa atcacaaagt tagtgatgac caccgcaacc acagccaccg tgtccgtgat
    33961 gatggtgatg atcgtggtcg tgaccgccgc agcaaccatc gtgatcgtga tgatgatcgt
    34021 gcccaccaca accgcaaccg tgttcgtgtc cgccgtgaac gtgtccgtgt gcgatttctt
    34081 ccgctgtcgc ttcacgaatg ccaaccactt ccacagagaa aagtaattcc tgaccggcta
    34141 acatatggtt accgtccacc acaacttcat cgccatctac ttcggtaatt accaccggta
    34201 gcggacctaa atccgtgtcc gcaataaaac gcatacccac ttctaattca tcgacgccca
    34261 taaatacatc tttcggtaca cgttgaacca tattatcgtt gtactcgccg taaccttctt
    34321 ccggtttcac acgcacttca aacacatcgc ctacagcttt gccttcaagg gctttttcta
    34381 agccttctac caagttgttg tgaccgtgta aatattctaa cggttggttt accggtgctt
    34441 catctactaa tacgccttct tgagtacgca cttgatatgc aatgcttggc actaaatctt
    34501 ttgtaatgtt catattgaat cctttaattc atcggtttta taaaatagca agccattgta
    34561 acgctttatt ttatatttgc aatctatctg gaaattttaa ccgcttgtca gtaaattagt
    34621 cgataatatc aggggttacg gtgtctacca catcaactgc ggttcccacc actccaccaa
    34681 ccaccgaagt taccaaacaa ccacttagga aaatagttgc tgaaatcagc ccacatactt
    34741 tgattaattt tttcatttta aaatcctttc aaaaacaaaa aacagcccta atcaagacta
    34801 gagctgcatc atatttattc gcttaaatta tttttcttca gcgataaagc gataaactac
    34861 cgcaccgata attgcaccga caatcggagc aacccagaac aaccataatt gctcaatcgc
    34921 ccagctgcct tggaataacg ctacaccggt tgaacgtgcc gggtttactg aggtattggt
    34981 taccggaatg ctgattaagt ggattaaggt taaagccaaa ccaatagcaa tcggagcgaa
    35041 acctgctgga gcacgtttat cggttgcacc cataatgatg attaagaaga atgccgttaa
    35101 taccacttca attaataatg ctgctgttaa gctatagccg tgtggcgaat gctcaccata
    35161 accgttgccg gcaaagcctg ctgtagcatc aaaagtcgga acacctgaag caatggtgta
    35221 taacactgca ccggcagcaa tcgcaccgat tacttgggca atgatataag gcactaaatc
    35281 tttagcgtta aaacgaccgc cgactaataa accgattgaa accgccgggt tgaagtgacc
    35341 acctgaaata tgaccgactg catacgccat tgttaatacg gttaaaccga aggctaacga
    35401 aacgcctgca taaccgattc ctaattcagg aatgcctgct gctaaaactg cactgccgca
    35461 accaccaaac actaaccaaa atgtcccgaa aaactcagca aaatattttt tcatttttta
    35521 tccttaccct aaagggtgaa tcacacataa gtgtattaac tttccgaatg ctataaaaca
    35581 tagccaataa aatatgagta
//
LOCUS       DANLRW010000011        34753 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.011, whole genome shotgun sequence.
ACCESSION   DANLRW010000011 DANLRW010000000
VERSION     DANLRW010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 34753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34753
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.011"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(199..1074)
                     /gene="ubiA"
                     /locus_tag="PXA71_000441"
     CDS             complement(199..1074)
                     /gene="ubiA"
                     /locus_tag="PXA71_000441"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HDL5104589.1"
                     /translation="MNNETLFSKQKWIAYAQLMRFDKPIGTLLLLHPTLWALFIAAEG
                     MPPVAILAIFTLGVIVMRAAGCVINDYADREIDGHVKRTSQRPLATGRVTTTEAKVIF
                     AILLLFAFLLDLMLNRYAFLLSFVAVFLAVIYPFMKRFTHLPQVVLGMAFGWSIPMAF
                     GAVTETLPLECWLLFFANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIIA
                     LLQFITLILLGLLGVVKDYHIGYFVVLALSATLFIYQCWLTKKRERSECFKAFLNNHY
                     FGLGVFVAILVGIYF"
     gene            complement(1067..1828)
                     /locus_tag="PXA71_000442"
     CDS             complement(1067..1828)
                     /locus_tag="PXA71_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HDL5104590.1"
                     /translation="MKQANRHKKIIELVNQLGYVSTEQLVAELNVSPQTIRRDLNEMA
                     ENNLIRRHHGGAAAPSNTENSDYTHRKQFFSHEKNAIAQQVAKLIPNGASLFLDIGTT
                     SEAVALALLSHKNLKVVTNNLNAAHILMQNEDCQITVAGGGLRSDGGLIGEETVRFIN
                     QFRLDFGILGISAVDMDGSMLDYDYHEVQVKRALMECSRQVVLVTDHSKFTRTAIARL
                     GNVKEVNYLFTDQDLPLELQTHLSQSDVIVKICNE"
     gene            complement(1895..3262)
                     /gene="purB"
                     /locus_tag="PXA71_000443"
     CDS             complement(1895..3262)
                     /gene="purB"
                     /locus_tag="PXA71_000443"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDL5104591.1"
                     /translation="MELTALTALSPIDGRYQDKVASLRPIFSEFGLLKFRVTVEVRWL
                     QKLASHTQINEVPVFSEKANDYLNQIVADFSLEDANRIKTIERTTNHDVKAVEYFLKE
                     KCEALPELQAVNEFIHFACTSEDINNTSHALMLKTAREEVLLPEWKKVIDAVAELAKC
                     YQHIPLLSRTHGQPASPTTMGKEMANVAYRLQRQYKQLENLEILAKINGAVGNYNAHL
                     SAYPEIDWHTFSQEFVESLGVTWNPYTTQIEPHDYIAEFFDCVARFNTILIDFDRDMW
                     GYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGQKLPISRWQ
                     RDLTDSTVLRNLGVGLGYALIAYASTLKGISKLEVNEQHLRDELNQNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDETAMREFIDKLEIPENEKNRLKEMTPASYIGYAVE
                     LVDKL"
     gene            complement(3296..3925)
                     /gene="hflD"
                     /locus_tag="PXA71_000444"
     CDS             complement(3296..3925)
                     /gene="hflD"
                     /locus_tag="PXA71_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HDL5104592.1"
                     /translation="MADYHDITLAYAGVCQAATLVQQFAHKGMADREAFKCALESLLI
                     TQPESTLSVFGDDLSHLKMGLETALAQTGGGNGKLDTEVGRYWISLLALSQKLNKNPE
                     AKQQLAQRLQQVERQLALYEDNVMADQMIANLAAIYSDIISPLGTKIHVMGMQDYLVR
                     PDIQNKIRASLLAGIRAGILWQQVGGSRWQFLFSRKKIFNQAQKFYRQI"
     gene            complement(4057..5721)
                     /gene="cydC"
                     /locus_tag="PXA71_000445"
     CDS             complement(4057..5721)
                     /gene="cydC"
                     /locus_tag="PXA71_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HDL5104593.1"
                     /translation="MKSLFPFFALYQTHFGRLLLGVVLAILGLAASIGLLSLSGWFLA
                     ASFLAGNALIFNFFYPSSGVRGLAVGRTISRYFERLVTHDATFRVLANLRASVFKKLI
                     PLSPSGLNRFRNSELLNRLVADVDTLDTLYLNLVSPFVSAVMIIAFMAIGLSFVSVPL
                     MLIICGTLLVLLAVIPTVFYRLGLKLGRNAIQSRANYRSQFIEWVQLNAEFLLFGNLN
                     QMSEKLQQTEQQWLNAQSKESRLSGLSNSLIMLSNGILTCVVIYLVSTSINVPTAKYP
                     EALIALVIFCVMASAEILSPIGIAFLHLGQVITAAERISEITEQQPNVTFGSKAEWQN
                     LSQNQPLVRCENVSFAYYGEQNVLNNLSFKVLKGQKVAILGKTGSGKSTIFQLLNRNY
                     DPTSGQIWLNNCKIDEYSEPMLRSKLVTLSQRVHIFSQTLKDNLLMGNAQATDEQMQE
                     AVRKVGLGHLLETDGLNLWLGEGGRPLSGGEQRRLGLARLLLSSAELVLLDEPTEGLD
                     RETEQQILNLILTHCCDRTLIMITHRQSGLDKFDVVYRIDNGRLVG"
     gene            complement(5721..7487)
                     /gene="cydD"
                     /locus_tag="PXA71_000446"
     CDS             complement(5721..7487)
                     /gene="cydD"
                     /locus_tag="PXA71_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HDL5104594.1"
                     /translation="MEKQRQRELQKWLKSQQKVIKKYMHLNILLGSFSSLCMIGQMWL
                     IATMLDKMLIGKQSPNSFLVEIMLLFCCFAARAFFIFLRERVGFKAGQTLRLHLRRQI
                     LAKMEAVGPMSIQQKPAGSWATLMLEQVENLHNFYARYLPQQFLSLIVPLLILCFVFP
                     INWAAGAILFATMPLLPLFMILAGMKAVEANQRNIGILSRISGQFLDKLKGLETIRLF
                     GQAEKQTEQIYQSTEDFRISTMDVLKMAFLSSAVLEFFTAVSIAVTAVYFGFIFLGEL
                     DFGYYGTGVTLFIGFFCLMVAPEFYQPMRELGVFYHDKAAAISAADNIETFLKEKVKT
                     QGGNLQENVENQPLVIQAKDCVIFSPQGKALTQALNFELNAHQHIALVGQSGAGKSSL
                     MNMLLGFLPYEGSVTINGTELRDLNLSQWRAKLAWVGQNPQLMHGSLKENILIGNPNA
                     TDSELAKALQLSKADEFVARLGLEHQVQDSNIGISGGQAQRIAIARALLRPYELLLLD
                     EPTASLDMDSEQQVLAALHNLSREQTTLMITHRVEDLTQCDEIWVMKQGQIIQKGRFT
                     ELEHTGFFAELIHNELVHQGEI"
     gene            complement(7602..11699)
                     /locus_tag="PXA71_000447"
     CDS             complement(7602..11699)
                     /locus_tag="PXA71_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translocation/assembly module TamB"
                     /protein_id="HDL5104595.1"
                     /translation="MTDENKQTATNQTDSAQEPQATQPKKSKWRFLKHGFCLTFILLL
                     LAILFLCTGYGQRKVLSWVDKFVEPLQLGQVQGSLQDGLQLSDARFVMDGVNVTVGQA
                     DLHIGFSCLLHYEMCLNNLSLKDTEVLIDTTKLPPSQPKEETEPFTELNLPLGISAQN
                     INLENIKVKVDDMDIHLNHFHTALSGKGRAITVHPTQLEGLNLLLALKLDETDTEQAV
                     DFAQKNAKTEALSATNPQEIADKVIQEAVEKTSEKVVEGFHQLQRKTVAQAEQVDNKV
                     DWAAIKAQLAQPLLDKNIRFSLPLDLNIEQIDIANVAIAQKAKDEKGNLIEPISLLNV
                     ASLQLQAQAKDQHINLKSLDFKSDQGDLTASGSLSLQDNYPLSWTLSGHEAKTAKVKL
                     PFNQIEASLSGELYDKTSLKVKTAGAISASLEGNVALAQAKTPFDLSLKSESMRYPFA
                     PQQNGDVLSLENIAMRLNGNLLDYALEAKVSAKGMGVPASSASLTGKGELTHFNIQDL
                     SLNTLEGTAKIDGLVDWSEGVAWRSNLKLQHINTKSLLADWPAVLSGSLSSEGYAGRG
                     NSASGWKADVSNIDIKGSLLQKNLHLSGNLKADHQQLLDVPGLSLVYGENKIDLKGVL
                     GEKSDFYADIKAPNLQGLVPNLKASVNGNAKLSGKVSEPNIDLDLVASNVGYEQFKLQ
                     NLTAKGKITTEKTIQGDLTLGLRQFAYNEIKVGNATLLLKGNEENHSLKLSAKGNPVG
                     ADLQISGKFDRLKEIWEGQLSQVSIQSTEFGQFQADKAVNVKYDNKAINANISAHCWH
                     NRKINLCFPTAFNAGVEGKVPFEIRNFDLAVLQQFLEKNSQLSGIVNAKGDAAWFKNK
                     QPQVNLDLTSNAIKFIQKMEGGKSFPLTVSPLKIDLKMSDNNLTLKSDLRVENNGRLS
                     TDLVMKDLSKARALSGNIHLDQLSLKLIRPLLERGDSVDGNVNARLTVSGTATSPLLH
                     GNLNVTELKARSVTMPFDITGGNLAMNFHGATSTLSGKLQTKQSELRLEGDADWRDLN
                     AWKTRVHAQANRFQVDIPNIAKVAVSPDIQVTATPTLLTLSGNVDIPWARIEVEQLPE
                     SAVSVSGDEVIMDGSVKNKVPFSQRNIPAQTSGGMAINADIKINIGNDVKLKAYGLNS
                     NVNGLLSVRQGKQGLGLYGQVHLREGRFAAYGQDLLIRKGDISFAGSPSQPTLDIEAI
                     RNPEAMEDPTITAGVRVTGLADNPTVKVFSDPAMSQNEALSYILTGRSLESSGDTSSS
                     NAVAAALLSMSLSKSSKLVGDVGSTFGLKDLSVTTAGIGDNTKVEVSASLAPKFRVKY
                     GVGIFAPLTELTLRYNLTPRLYLQWVSSINQAVDLMYRFEFDELF"
     gene            complement(11780..13615)
                     /locus_tag="PXA71_000448"
     CDS             complement(11780..13615)
                     /locus_tag="PXA71_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor"
                     /protein_id="HDL5104596.1"
                     /translation="MNTKLHFLTFCCLVAFASMAQANQEQRLSDVDRERVENLQEKLA
                     EDSDDEPEIEPLVTLEVKGIQGKDAKKNVELYLDQIANEYADGSERYQYLVQTTVDKA
                     LRALGYYNSRYQFVQLPQEGKKPLLVLNVELDKETVKIDETDIVLQGDAKTDEDFAHL
                     VSKAPKQGSRLNHKTYDNFKGDIESTAFSKGYFDGHWLYHRLEVYPTDHKADWRLGYD
                     SGKRYHYGQIRFVDSQIKEEYLQNILKIHSGEPYLANDLSILTQDYLSSNWFSSVMVE
                     PHLNEQDKLVDLNVLFQPKKRNEVEIGIGYETEVGPRLQLNWKKPWLNSRGHSIESRT
                     YVSKPEQTFEFGYNIPLREDPLHYYYQLSGTLENEDQNDTKSTAATLGLQRFWTHETG
                     WSFSVGLKARYDSFTQANDRFKTLLVYPTASLNRTRTDGKPYPLWGDTQKLTVNWGSR
                     AVGSDVNFYSYKASTSWARTYFDNHRFYLRAELGYLKANQFERIPPALRYFAGGDMSV
                     RGFGYKDISPRDPSNGKRVGGSHLATGTVEYQYQVYPNWWGAIFYDAGLASNKFKTQD
                     LYYGTGLGVRWASPIGAIKFDVATPVKSPDNSKGIQIYIGLGSDL"
     gene            complement(13627..14472)
                     /locus_tag="PXA71_000449"
     CDS             complement(13627..14472)
                     /locus_tag="PXA71_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HDL5104597.1"
                     /translation="MFKQINKRLNFNIFLQMFVLFTPLVQAAQMAIVIDDVGYRIKED
                     REILALPKAVSVAIIPVAPYATERAKDAYNQKRDILIHLPMEPKSKQPIEEGGIHIGD
                     NEEKIRKLIHTSRGQVPYAIGLNNHMGSGATSDSATMQHLLKVLKENTLFFLDSKTIG
                     SSVAAKTARQFGINTLERDIFLDDSDLLADVQKQFAHAINHARKNGVAVVIGHPRKNT
                     ISVLKQNLAQLPQDIELVSVGNLWRNEKTVPDKPFIMLFEQEPALSSVPPYDSIPLLR
                     GIPKE"
     gene            complement(14473..15636)
                     /locus_tag="PXA71_000450"
     CDS             complement(14473..15636)
                     /locus_tag="PXA71_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL5104598.1"
                     /translation="MLVKRINSYCWTAIFSGVISFSTPFSFANNLNQIQQKIQQQTSK
                     INEQKQKRNALQSTLKNQEVEMGKVLDKLQKTEMSLTEVRQTIKATETEIARLEKLEK
                     QQKEKLKEQLDSAYRSGVNPSVLERLMSEEAKNAERMTAYYQHMNNIRIDAIVEIRKT
                     QADLKARRDELKGQQKDHQTQLNEQKKQEKDLKKVQSQRESTLRLIDKTLEQDQSRLE
                     NLRSNEQALKQQLEQAQREAQQAEKREQQREKQAKSGQSKTTENVERTPIKAGRYTMP
                     VSGNIITPFGNNWHGVVIGASAGTSVRAMASGRVIMAQWLAGYGNMVAIDHGNGDISL
                     YGYNQSISVSKGSRVQGGQVIAKVGNSGGQSRSALYFGVTRKGTPINPLNLVK"
     gene            15804..16487
                     /locus_tag="PXA71_000451"
     CDS             15804..16487
                     /locus_tag="PXA71_000451"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HDL5104599.1"
                     /translation="MQLVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKSAGQKLKA
                     AGFEFDIAFTSVLTRAIKTCNIVLEESDQLWIPQVKNWRLNERHYGALQGLDKKETAE
                     KYGDEQVHIWRRSYDISPPDLDPQDPNSAHNDRRYANLPKDLIPNAENLKITLERVLP
                     FWEDHIAPALISGKRVLVTAHGNSLRALAKHIEGISDADIMDLEIPTGQPLVYELDDN
                     LKVISKRYL"
     gene            complement(16624..17181)
                     /gene="frr"
                     /locus_tag="PXA71_000452"
     CDS             complement(16624..17181)
                     /gene="frr"
                     /locus_tag="PXA71_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDL5104600.1"
                     /translation="MINEIKKDTQDRMEKSLEALKGHIAKIRTGRAQPSLLDGIQVEY
                     YGSATPLRQVANVVAEDARTLAVNVFDKSLISAVEKAILTSDLGLNPSSAGTTIRVPL
                     PPLTEERRRDLIKIVKAEGEQGKVAIRNVRRDANDQIKALLKDKEISENEQHKAEEDI
                     QKITDTFIKKVDEVLAAKEKELLDF"
     gene            complement(17233..17949)
                     /gene="pyrH"
                     /locus_tag="PXA71_000453"
     CDS             complement(17233..17949)
                     /gene="pyrH"
                     /locus_tag="PXA71_000453"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDL5104601.1"
                     /translation="MSKPIYKRILLKLSGEALQGSEGFGIDPSILDRMALEIKELLAE
                     GVEVGVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAEVNAKLM
                     SAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGSPFFTTDSAACLRGIEIEADVVLK
                     ATKVDGVYDKDPAKYADAKLYNKLTYAQVIEQELQVMDLAAFTLARDHGMPIRVFNMG
                     KPGALRNVVFGTEEGTTISE"
     gene            18041..19603
                     /locus_tag="PXA71_000454"
     CDS             18041..19603
                     /locus_tag="PXA71_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL5104602.1"
                     /translation="MKSKQLFGILVAISLATAASCLMLIGSGFFPNPSIFEVILGVFL
                     IIALASSKWTYYLLLLPISIAYAIYTPVGIKFGKPTYEYIASIFATDMMESKEFIAQL
                     PILNIAAGIAIVLAVIFYRKITNRYQIRFLRNKTFVISAFVLMLFSLAPFKFFQEFYN
                     SSLKVKKELEVLNNLTLDSQWGQSTLSSTSNYDDYVLIMGESARKDYHHAYGYPAANT
                     PFMSSAKGTLIDGLTSGGTNTIASLRLMLTKPDTEKWEANYGLTLIDLIKSTGIKTYW
                     ISNQGYLGNYDTPISSIGNKSDVKIFTKAGDSLNTNVSDFELLPHFAKVIEEPAQGKR
                     FIFLHLYGSHPITCDRLTDYPKMFDDDKLPKRYFNVNCYVSSIKKTDELLKRVYDLLV
                     KNQENHQRSFSMVYLSDHGLSHEVSKENIVIHNGKDRSKLHYDIPLFKISSDDTQRNE
                     YKAFKSGLNFTNGIANWIGIENPLLDKEINLFNEQNDKSDYGLKKIIETQSTVEDPAV
                     PIPESYLYKATN"
     gene            complement(19667..20518)
                     /gene="tsf"
                     /locus_tag="PXA71_000455"
     CDS             complement(19667..20518)
                     /gene="tsf"
                     /locus_tag="PXA71_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDL5104603.1"
                     /translation="MAEITASLVKELRERTGAGMMECKKALVEANGDIELAIDNMRKS
                     GQAKAAKKAGRVAAEGVILARVASGFGVLVEMNCETDFVAKDAGFLELANEVADFAVA
                     NKGTTIEALQAQFEEKRAALVAKIGENMNIRRVQYLEGEVIAQYLHGAKIGVLVAGAG
                     SEDELKKVAMHVAASKPEFVNPEDVSADVVAKEREIQIEIAMNSGKPKEIAEKMVEGR
                     MAKFTGEVSLTGQPFVMDPSQSVGQYLKSVNTSVSNFIRLEVGEGIEKVEEDFAAEVA
                     KITGGNA"
     gene            complement(20614..21333)
                     /gene="rpsB"
                     /locus_tag="PXA71_000456"
     CDS             complement(20614..21333)
                     /gene="rpsB"
                     /locus_tag="PXA71_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005645552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDL5104604.1"
                     /translation="MAQVSMRDMLNAGVHYGHQTRYWNPKMKPFIFGARNGVHVINLE
                     KTLPLFNEALAELTRIASNNGKVLFVGTKRAASDAVKAAAVESQQFYVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQTQDGTFDKITKKEALMRTRELEKLELSLGGIKDMNGLPDA
                     IFVIGADHEHIAIKEANNLGIPVFAIVDTNSTPDGVNYIIPGNDDATRAIQLYLDSAV
                     AAIKEGRGVETVEVAEEASAE"
     gene            21678..22706
                     /locus_tag="PXA71_000457"
     CDS             21678..22706
                     /locus_tag="PXA71_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5104605.1"
                     /translation="MKKTLSALAIAAATFTSTSTLAANEVNVYSYRQPYLIEPMLKNF
                     EKDTGIKVNIIFADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKVL
                     EKNIPAQFRDSNDQWFGLTTRARVIYTSKDRVGKLPAGFDYLDLAKPEYKGKVCVRSG
                     KNSYNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGN
                     SYYYGKMLDDEKQKSWAEAAIINFPSGEHGTHKNISGVVIAKHSPNKANAVKLIEYLS
                     GEKAQGLYAELNHEYPVKEGIEPSAIVKGWGTFKSDTIKLEDIAKNYEAALKLVDEVK
                     FDDFSEKK"
     gene            22829..24475
                     /locus_tag="PXA71_000458"
     CDS             22829..24475
                     /locus_tag="PXA71_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5104606.1"
                     /translation="MRSQFCWKSIAALTTFIVLLPLIAICYHALQGDNENLAHLWQTM
                     LPIYLKNSTLLVLGTVFLALIFALPTAWIVANYRFWGQRTLQWLLCLPLAMPAYLIAY
                     LYTDLLDYSGAFQGWLRSIFGWTHPQDYWFPQIRTLYGACFVLALVLYPYIFLLVRVA
                     LLEQSENLTHSAKMLGASPSQLFRRITLPLIRPSVAVGIALVAMETLGDFGTVAYFAV
                     PTLTTAIYDSWLGYHDLGTASQIAIFMLLMIFLFLSLEQYSRRKQKSYQRGYEKKSAF
                     KFLTGWKLALALAWCWGLLALAFFIPFGRLLYWAYDYFEQAWNLDFVQFSLNSLKVSI
                     IASVITVLIALLLHFSKRLNTRKILVKNDRLSLQLASLGYAVPGTVLAIGLLSPLTFA
                     DHQLHAWLKSLELSPVGLIFSGSLFALVLAYTIRFLAMAIGSLETSLNKISPSLDMAS
                     QTLGKNGSAMLVKIHIPLIYKGILTAGLMVFIESMKELNASLLLRPFNFDTLATYVFT
                     FTSDEQLERAALPAIVLVLVGLLPVIWLTRSLISQSEKER"
     gene            24485..25495
                     /locus_tag="PXA71_000459"
     CDS             24485..25495
                     /locus_tag="PXA71_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5104607.1"
                     /translation="MSVLTINHLNLNFGSTKVLQNLHLAVNQNEIICLLGASGCGKTT
                     LLKAIAGLLPIEQGDIHLAGECLKSKAVEERQIGLIFQDYALFPHLTVADNIQFGLSK
                     LPKVQQKAITEKMLSVVHLQGFESRFPHELSGGQQQRVAIARALACQPELLLLDEPFS
                     NIDSQTRYAMIQEIKQILKSQNVPAIFVTHSKEEAFAFADKIAVMDQGKIIQFGKPNE
                     LYHSPVNPFVADFLGGTNYLNCNVTEDNVLCSPIGEFRLFPEMNVQKGRYRWLLRPEQ
                     IILKPNELGLGKVVGKLFLGLYYRYQVEIKGIEIVTYQSQELKIGEQVEVGFQVREFI
                     LF"
     gene            25505..26131
                     /locus_tag="PXA71_000460"
     CDS             25505..26131
                     /locus_tag="PXA71_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family oxidoreductase"
                     /protein_id="HDL5104608.1"
                     /translation="MKIEVWSDYACPFCYIGKRHLEQALAQFEGEVEVVFRAFELDPH
                     ANGEPEGDIQQRLMRKYQKTAEQADEMIRYVEQAGKQAGLDLRYRTTQYTRTFEAHRL
                     AKFAESKDLGEAMVERLFKAYFTDNTILAKRTELISLALDIGLERDEIAQLLTGDDFG
                     HEVREDERVAHKYGIHSVPFFVINEKLGVSGAQPPEILLDAIKQALQK"
     gene            complement(26193..27683)
                     /locus_tag="PXA71_000461"
     CDS             complement(26193..27683)
                     /locus_tag="PXA71_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HDL5104609.1"
                     /translation="MSLYQIARTETGKVISLNAKMANRHGLIAGATGTGKTVTLRKLA
                     ESLSDDGVPVFLVDVKGDLSGSVQAGNFSGKIAERILQFNLGGEDYLKGYPVSFWDVF
                     GTSGIPLRITISEMGPMLLSRLLNLNDTQGGLLNLVFRVADDRGLLLIDLKDLRALLK
                     FVADNAKEFQLEYGHISAASVGAIQRALLRLENEGADNLFGEPALDLHDWIQTRNGRG
                     VINMLNAEKLINSPRVYSAFLLWFMAELFENLPEVGDPEKPTFVLFFDEAHLLFDDAP
                     KALVDKIEQVVRLIRSKGVGVYFVTQNPLDIPDSVLGQLGNRIQHALRAFTPRDQKAV
                     KSAAETFRANKEVNVVEAITQLGVGQALVSVLDEKGMPTPVEIAYIYPPKSQLAPLAT
                     GERDSLVKQDDLYHHYSQYVDNESAFELLNAKAEAIKAEQAAAEEANNDFFGGILSSI
                     FGSKKKKDQSITEQVVSQVAHSVGRNLRNQVTKQIMRGILGAITKK"
     gene            complement(27742..28977)
                     /gene="rhlB"
                     /locus_tag="PXA71_000462"
     CDS             complement(27742..28977)
                     /gene="rhlB"
                     /locus_tag="PXA71_000462"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HDL5104610.1"
                     /translation="MSNHLTEHRFIDFPIHANVLNALDSKGFEFCTPIQAKTFPITLK
                     GKDIAGQAQTGTGKTLAFLIATFNHLLNNEIETSKNQPRALILAPTRELAVQIGADAE
                     LFLKHSDLKLALAYGGDGYDKQVQEIEKGVDILVGTTGRVIDYVKQGIINLDKIQVIV
                     LDEADRMFDLGFIKDIRYLMRKAPKPSERLTLLFSATLSAKVRELAYEDMDNAEYIEI
                     EPLQKTGHRIKEELFYPSNEDKMALLLTLLEEEWPERCMIFANTKHKCEEIWQYLSAD
                     GHRVGMLTGDIPQKKRLSLLDNFTKGNLDILVVTDVAARGLHIPDVTHVFNYDLPDDK
                     EDYVHRIGRTGRAGESGHSISFACERYAVNLPAIEEYIGHQIPVSQYDKESLLTLPKV
                     NRSRSKKTFLAKTKKNSRN"
     gene            complement(29065..29787)
                     /gene="recO"
                     /locus_tag="PXA71_000463"
     CDS             complement(29065..29787)
                     /gene="recO"
                     /locus_tag="PXA71_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HDL5104611.1"
                     /translation="MTIDQWQRAFVLHRREYSENSLLVEFFTEHHGRITLLAKGARRA
                     RSPLKAVLQPFTPLLLRWSGKGDLKTLTKAEPAALTLPMETLSLYSGFYINEVLARVL
                     ENQTAYPELFQHYLRCITELATQKQIEPILRTFEFHTLKALGYGVDFTHCAATGLPVD
                     PKMTYQFQENQGFIASLLQNNQSFLGSDLLAFAQLDFSEKSTQQAAKRFTRMALKPYL
                     GSQPLKSRELFQSILPNKLKSG"
     gene            complement(30017..30934)
                     /gene="era"
                     /locus_tag="PXA71_000464"
     CDS             complement(30017..30934)
                     /gene="era"
                     /locus_tag="PXA71_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013525392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDL5104612.1"
                     /translation="MTEQIQTPAKTYCGFIAIVGRPNVGKSTLLNKILGQKISITSRK
                     AQTTRHRIVGIHTEDQYQAIYVDTPGLHIEEKRAINRLMNRAASSAIGDVDLIIFVVE
                     GTKWTEDDEMVLNKLRSAKAPVLLAINKIDNIKEKEELLPHITELSQKFDFAEILPIS
                     AQRGKNVHILQKFVRQSLRQGEHHFPEEYVTDRSQRFMASEIIREKLMRFTGEELPYS
                     VTVEIEQFKMNERGVYEINGLILVERDGQKKMVIGAGGQKIKTIGIEARKDMERLFDN
                     QVHLELWVKVKAGWADDERALRSLGYMDE"
     gene            complement(31037..31711)
                     /gene="rnc"
                     /locus_tag="PXA71_000465"
     CDS             complement(31037..31711)
                     /gene="rnc"
                     /locus_tag="PXA71_000465"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDL5104613.1"
                     /translation="MQLERLQKKLGYQFHNLDYLIQALTHRSAATKNNERLEFLGDSI
                     LNFTIGKVLYDKFPKANEGELSRMRATLVREQTLAIIARKFDLGDYLKLGPGELKSGG
                     FRRESILSDCVEAIIAAIYLDQDMAKAMEKVEDWYSDLLKDISPGDSQKDPKTRLQEF
                     LQGRKLPLPEYDVLDIKGEAHNQTFRVTCKVINVEEVFIGIGTSRRKAEQNAAEKALA
                     VVKTKK"
     gene            complement(31757..32716)
                     /gene="lepB"
                     /locus_tag="PXA71_000466"
     CDS             complement(31757..32716)
                     /gene="lepB"
                     /locus_tag="PXA71_000466"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDL5104614.1"
                     /translation="MAQFMPIIFLGIIYGIWQWLDSMQLPNTISIILVALVIICGGFW
                     AFYKFSADPRRKQAIVLQQKRLGRELTAEEIAEIQPKSAVGEFFASLFGILFFVTVLR
                     SFLFEPFQIPSGSMEPTLRVGDFLVVNKFSYGIKDPIWQNTLIETGKPERGDVIVFKA
                     PAQPHVDYIKRVVAVGGDKIKYDFATQQLTVTKANGETKVFEYSEGKPNPEFFYHGEM
                     QVERTEKGNVTHQILNHPMAFNYAPYFYQQEGQAEGEWVVPQGYYFVMGDNRDNSEDS
                     RFWGFVPERNIVGKATFIWLSLDKKANEFPTGLRFSRMFTSIN"
     gene            complement(32803..34596)
                     /gene="lepA"
                     /locus_tag="PXA71_000467"
     CDS             complement(32803..34596)
                     /gene="lepA"
                     /locus_tag="PXA71_000467"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018345454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDL5104615.1"
                     /translation="MQNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLNYKAKDGEIYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAIEIDLEVVPILNKIDLPAAEPERVAEEIEDIVGIDAIDAVR
                     CSAKTGLGIEDVLEEIVKKMPAPEGDAEAPLQALIIDSWFDNYLGVVSLVRVKNGVLK
                     KGDKIKVMSTGQSYNVDRLGIFTPKQVDTTELKTGEVGWVVCAIKDILGAPVGDTLTH
                     HHNPATEVLPGFKKVKPQVYAGLFPISSDDYEAFRDALGKLSLNDASLFYEPETSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVVQTSGETIYVDSPSKLPA
                     INNIAEIREPIAECNMLVPQEFLGNVITLCVEKRGVQTNMVYHGNQIALTYEIPMGEV
                     VLDFFDRLKSTSRGYASLDYGFKRFQTADMVRVDIMINGERVDALAIIVHRANAAYRG
                     RELVEKMRELIPRQQFDIAIQAAIGNHVIARSTVKQLRKNVLAKCYGGDVSRKKKLLQ
                     KQKEGKKRMKSLGNVEVPQEAFLAILHVGKD"
BASE COUNT         9952 a         7590 c         6445 g        10766 t
ORIGIN      
        1 gtaatgtccc ttttttgaat gtctactaca aaatgggata ttttacaaac cgattgacta
       61 atgaagcaag aatataatta actacaactg gatatatttt gcaaatttcc cgataaattt
      121 caccgcttgt agataaaaac cgtagataaa aaccatagat aaaaaatagg agctaaacat
      181 ttttagcccc taccgtcatc agaaataaat cccgactaaa atcgccacga acacacctaa
      241 gccgaaatag tggttattta gaaacgcttt aaagcattcg ctacgttctc tttttttggt
      301 cagccaacat tggtagataa acagcgtggc acttaaggct aatacgacaa aatagccgat
      361 gtgataatct tttaccacgc ccaataaccc caataaaatc aaggtgataa actgtaataa
      421 cgcaataatt ttattatcgt attgagcgaa taaaattgca gtggatttaa ctccaattcg
      481 taaatcatcg tcacgatcaa ccattgcata ttgggtgtcg taggcgactg tccacgctag
      541 attggcaaaa aacagcagcc agcattcaag tggaagagtt tccgttaccg caccaaatgc
      601 catcggaatc gaccaaccga atgccattcc aagcactact tgtggcaagt gggtaaaacg
      661 cttcataaag ggataaatca ccgccagaaa aactgccaca aaggaaagca gaaacgcata
      721 gcggtttagc attaaatcga gcagaaaagc gaacaacagc aagatggcaa aaatgacttt
      781 tgcctcagtg gtggtcactc tgccggtagc taatgggcgt tgagaggtgc gtttaacgtg
      841 tccgtcaatt tctctatcgg cataatcatt aatcacacaa cctgccgcac gcataacgat
      901 taccccaagg gtaaaaatgg ctaaaatcgc aacaggcggc attccctctg cggcaataaa
      961 taacgcccat agtgtggggt gtaataataa taacgtgccg atgggtttat cgaaacgcat
     1021 taactgggcg taggcaatcc atttttgttt agaaaaaaga gtttcgttat tcattacaaa
     1081 ttttgacgat aacgtccgat tggcttaaat gagtctgtaa ttctaacggt aaatcttgat
     1141 ctgtaaacaa ataatttact tctttaacat ttcctaaacg tgcaatagct gtacgggtaa
     1201 actttgaatg atcggtcact aaaaccactt gtcgggaaca ttccattaat gcacgcttta
     1261 cctgcacttc gtggtaatcg taatcgagca tagagccgtc catatccacc gcactaatgc
     1321 ctaaaatccc aaagtccaaa cggaattggt taataaagcg aaccgtttct tctccgatta
     1381 gcccgccatc acttcttagc cctccgcctg ctaccgtaat ttggcaatct tcattttgca
     1441 tcagaatatg agccgcattt aaattattgg taactacttt taaattttta tgcgaaagta
     1501 aggctaatgc cactgcttct gaagtcgtgc caatatctaa aaataatgat gctccatttg
     1561 gaatcagttt tgccacctgt tgggcaatcg catttttctc gtgtgagaaa aattgcttgc
     1621 ggtgggtgta atcactattc tccgtattgg aaggagcggc tgccccaccg tgatgacggc
     1681 gaatcagatt attttctgcc atttcattca gatcacggcg aatggtttgc ggactcacat
     1741 tcaattcagc cactaattgc tcggtactca catagccaag ctgattaacc agctcaatga
     1801 tctttttgtg tctgtttgcc tgtttcatat ttcctctttt gcaaataatt tgcagaaaaa
     1861 gaccgcttgc aagcggtctt ttttcagtta aattttacaa tttatcaaca agttcaaccg
     1921 catagccgat atagcttgcc ggtgtcatct ctttcaaacg atttttttca ttttccggaa
     1981 tttccaactt atcgataaac tcacgcattg cggtttcatc aacccgtttg cctcgagtca
     2041 gctctttaag tttttcatac ggtttttcaa tgccataacg acgcataaca gtttgaattg
     2101 gctctgccaa tacttcccag ttttggttga gttcatcacg caagtgttgt tcattcactt
     2161 ctaatttgct aatacctttt aaggtggacg cataagcaat taacgcataa cctaaaccta
     2221 cacctaaatt acgcaacacg gtggagtcag ttaagtcacg ctgccagcga gaaatcggca
     2281 atttttgccc caaatgagcc attaccgcat ttgccaagcc aagattgcct tcggaatttt
     2341 caaaatcaat cgggttcact ttatgtggca ttgtgctaga gccgatttca ccggcaatag
     2401 tgcgttgttt gaagtgattt aaggcaatgt agccccacat atcacgatca aaatcaatta
     2461 aaatcgtatt aaaacgagcc acgcaatcaa agaactccgc aatataatcg tgcggttcaa
     2521 tttgggtggt gtatgggttc cacgtcacac ctaacgattc cacaaattct tggctgaaag
     2581 tgtgccaatc aatctccgga tatgctgata aatgtgcgtt atagttgccc actgctccat
     2641 tgattttagc gagaatttct aaattttcta actgtttata ttggcgttgt aaacgatatg
     2701 ccacatttgc catctcttta cccattgtgg tcgggcttgc cggctgaccg tgtgtgcgag
     2761 aaagcaacgg aatatgttgg taacatttcg ccagctctgc tacagcatca atcacttttt
     2821 tccattcagg taataatact tcttcacgag cggttttaag cattaaagcg tgcgaagtat
     2881 tattgatatc ttcagaagta caagcaaaat gaataaattc attcaccgct tgtaattcag
     2941 gcaacgcttc acatttctct tttaggaaat actccaccgc ttttacatcg tggttggtgg
     3001 tacgttcaat cgttttaatc cgattggcat cttctaacga aaaatcagcc acaatttggt
     3061 ttaggtaatc gtttgctttt tcagaaaaca ctggaacttc attaatttgt gtatgcgatg
     3121 ccaatttttg taaccagcga acttccaccg tcacacggaa ttttaataag ccaaattcac
     3181 taaaaatcgg acgaaggctc gcaactttgt cttgataacg tccatcaatc ggggataacg
     3241 cagttaaagc ggtaagttcc attgttttat attctccaaa taggtaaatg ttcggttaga
     3301 tttgacgata aaatttctgt gcttggttaa aaattttctt gcgtgaaaat aaaaattgcc
     3361 aacggcttcc gccgacttgc tgccacaaaa taccggctcg aataccggct agtagcgagg
     3421 ctcgaatttt attctgtata tccgggcgaa ccaagtaatc ttgcattccc atcacgtgaa
     3481 ttttcgtacc taacgggctg ataatatcgc tataaatagc ggctaaattg gcaatcattt
     3541 gatctgccat cacattatct tcatacaggg ctaactggcg ttccacttgc tgtaaacgct
     3601 gggctaactg ttgttttgct tcagggtttt tattgagttt ttggctaagg gcgagcaggc
     3661 ttatccaata acgtccgact tcggtatcta atttgccgtt accgccgcca gtttgagcta
     3721 atgcggtttc taagcccatt tttaaatggg aaagatcatc gccaaataca cttaacgttg
     3781 attccggctg agtgattaac aggctttcta aagcacactt aaaagcctct ctgtctgcca
     3841 tgcctttatg tgcaaattgt tgcactaacg tcgccgcttg gcaaacgccg gcataagcaa
     3901 gggtaatatc gtggtaatcc gccatctctg taaaattcaa tatgataaaa cattagtggg
     3961 aatatagcat tttttcagct tcttttgaat ggcaaaaggc atttattcta ttgaaaaata
     4021 aatgcctttt cattaatacg caatttgctg caaaaactat cctaccaatc gcccattatc
     4081 tattcgataa accacatcaa atttatccag tccgctttgg cggtgagtga tcataattaa
     4141 ggtgcgatca cagcagtgag tcaaaattag gtttaaaatc tgctgttcgg tttctctgtc
     4201 cagtccttct gttggctcat caagtaagac taattcagca gaactcagga gcaaacgggc
     4261 aagccctaaa cggcgttgtt cgccaccaga aagcggtctg ccgccctcgc ctaaccataa
     4321 atttaagccg tctgtttcaa gcaaatgccc taagcctact tttcttactg cttcttgcat
     4381 ttgttcgtct gtagcttgag cattccccat taataaatta tcttttaggg tttggctaaa
     4441 aatatgcact cgttggctta aggtaactaa ttttgagcgt aacatcggct ctgaatattc
     4501 gtcaatttta caattattca gccaaatttg accgcttgta gggtcgtagt tgcggtttaa
     4561 cagttggaat atggtcgatt ttccgctacc cgttttacct aagattgcca ctttctgccc
     4621 ttttaatacc ttaaaggaaa gattatttag tacgttttgc tcgccgtaat aagcaaagct
     4681 cacgttttca cagcgtacaa gcggttgatt ttggctcaaa ttttgccatt ctgccttgct
     4741 accaaatgtt acattaggct gttgttcggt aatttcacta atccgctcgg cggcggtaat
     4801 cacttgccct aaatgcaaaa aggcgatacc aatcggggaa agaatctccg ccgatgccat
     4861 tacacagaaa atcactaacg caattaaggc ttcagggtat tttgcagtgg gcacattaat
     4921 cgaagttgaa accaaataga tcaccacaca agtcaaaatg ccgttggata acattatcaa
     4981 gctatttgat aagccggaca gtcggctttc tttgctttga gcgttcagcc attgttgttc
     5041 agtttgctgt agtttttcgc tcatttggtt caagttgcca aagagtaaaa attctgcatt
     5101 taactgtacc cactcaataa attggctgcg gtaatttgct cggctttgta ttgcattacg
     5161 ccctaatttc aaacccaatc gataaaatac ggtaggaata acggcaagca ataccaatag
     5221 tgtgccgcaa atgatcagca ttaatggcac ggaaacaaaa gaaagcccga ttgccataaa
     5281 tgcaataatc atcactgcac tgacaaaagg cgagactaaa ttcagatata gggtgtctaa
     5341 cgtatccaca tctgccacca agcggtttaa caattcgctg tttctaaagc gatttagccc
     5401 gcttggactc agtggaatca attttttaaa gacgctagca cgcaaattcg ccaatacccg
     5461 aaaagtcgca tcgtgggtga ctaaacgttc aaagtaacgt gaaattgtcc gccctactgc
     5521 caaccctctc acccccgatg aagggtagaa aaagttaaaa ataagcgcat tgccggctag
     5581 aaatgaggca gctaaaaacc aaccggaaag gctgagcaaa ccgatacttg ccgctaatcc
     5641 taaaattgcc agcacaacac ctaataatag tcgcccaaaa tgggtttggt agagagcaaa
     5701 aaacgggaac aacgatttca ttagatttct ccctgatgca ctaattcatt atgtattaat
     5761 tccgcaaaaa agccggtgtg ttctaattca gtgaaacgac ctttctgaat gatttgccct
     5821 tgtttcatca cccaaatttc atcgcattgg gttaaatctt ccactcgatg agtaatcatt
     5881 agcgttgttt gctctcggct gagattatgc agagcggcta acacttgctg ttccgaatcc
     5941 atatcaaggc ttgcagtcgg ctcgtctaac agtaataatt cgtacgggcg aagcaacgct
     6001 cgtgcaatcg caatccgctg tgcttgcccg ccagagatac cgatattact gtcttgcact
     6061 tgatgctcca accctaaacg tgccacaaat tcatcggctt ttgaaagctg taatgccttg
     6121 gctaattcag aatctgtcgc attagggttg cctattaaaa tattctcttt caaactgcca
     6181 tgcattaatt gcggattttg ccccacccac gctaatttcg ctcgccattg gcttaaattt
     6241 aaatctcgca gttcggtgcc gttaatcgta accgaccctt cataaggcaa gaaaccaagt
     6301 aacatattca ttaatgaact ttttcctgca ccactttgcc caaccaaagc gatatgttgg
     6361 tgtgcattca actcgaaatt taacgcttgg gttaaggctt tgccttgtgg tgagaagatc
     6421 acgcaatctt tggcttgaat cacaagcggt tgattttcaa cattttcttg caaattgcca
     6481 ccttgcgttt tcaccttttc ttttaagaaa gtttcgatat tatctgcggc actaatcgct
     6541 gctgccttgt cgtgataaaa cacgccaagt tcacgcatcg gttggtaaaa ctcaggtgcc
     6601 accattagac aaaagaagcc gataaataag gtcacgcccg taccataata gccaaaatcc
     6661 agctcaccta aaaaaataaa gccaaaatag accgccgtca ccgcaatcga taccgccgtg
     6721 aaaaactcca ataccgcaga ggataaaaac gccattttta gtacgtccat cgtactgatt
     6781 cggaaatctt cggtgctttg gtagatttgt tcagtctgct tttccgcttg cccaaataag
     6841 cgaatggttt ctaaaccttt taatttatct aagaactgtc cgctaatacg ggaaagaatg
     6901 ccgatattac gctgatttgc ctccactgct ttcattccgg ctaaaatcat aaataaaggt
     6961 aataatggca ttgttgcaaa taaaatagcc cctgctgccc agttaatcgg gaatacaaaa
     7021 cagaggatca gtaatggcac tatcagcgat aaaaattgct gtggcaaata gcgtgcgtag
     7081 aaattatgta gattttccac ctgctcgagc attaaggttg cccagctgcc cgccggtttt
     7141 tgttgaatgc tcatcggccc gactgcttcc attttggcta gaatttggcg gcgaagatgt
     7201 aaacgcaagg tttgccctgc tttgaaaccg acacgctcac gcagaaaaat gaagaatgct
     7261 ctggcagcaa aacaacagaa taagagcata atttcaacca gaaagctatt cggtgactgc
     7321 tttccgataa gcattttgtc taacattgtg gcaatcagcc acatctgtcc aatcatacat
     7381 aaactactga aactccctaa cagtatgttt aagtgcatat attttttgat gactttttgc
     7441 tgacttttaa gccatttttg taattcgcgt tggcgttgtt tttccataat tttgtcaatt
     7501 tttttgtttt ttcaaccgct tgtaaatcgg gtttgccatt ctactataaa gcaaaaaggt
     7561 tgttaatggc gaaacattaa caacctttca ttcagcctta actagaatag ctcgtcaaat
     7621 tcaaagcgat acattaaatc taccgcttgg ttaatacttg agacccattg taagtacaat
     7681 cttggcgtta aattatagcg taaggttaat tcggtaagcg gtgcaaaaat gcccacgcca
     7741 tacttcactc tgaatttagg ggcaaggctg gcacttactt ctactttggt gttatcgcca
     7801 atacctgcgg tggtcacgct taaatctttg agtccgaaag tgctaccaac atcacccacc
     7861 aatttactgc tttttgataa gctcatactg agtaatgccg ctgcgactgc attactggag
     7921 ctggtatcgc cactgctttc caatgaacga ccagttaaaa tataggaaag tgcttcattt
     7981 tgcgacattg ccggatcaga gaatactttt accgttggat tgtctgccaa accggtcact
     8041 cttaccccag ctgtaatggt cggatcttcc attgcctccg gattgcgtat agcttcaata
     8101 tctaaggttg gctgagacgg tgagccggca aaactaatat cacctttacg aatcagcaag
     8161 tcttgaccat aagcggcaaa tcgtccttca cgcaaatgaa cttgcccgta aagccctaaa
     8221 ccttgtttgc cttgcctgac agacaataag ccattcacgt tactgtttaa accataggct
     8281 ttgagtttga catcattacc gatgttaatc ttaatatctg cattaattgc cattccacct
     8341 gaggtttgag ccggaatatt acgttggcta aacggcactt tatttttcac agagccgtcc
     8401 ataatcacct catctccact tacactgacc gcactttcag gtaactgctc gacttcaatt
     8461 cttgcccaag ggatatctac atttccactt aaggttaaaa gagttggcgt tgccgtcact
     8521 tgaatatccg ggctaactgc cacttttgcg atattaggaa tatccacttg gaaacggtta
     8581 gcttgagcgt gaacccgtgt tttccacgca tttagatctc gccagtctgc atcaccctcc
     8641 aaacgcagtt cgctttgttt ggtttgtaat ttaccgctta aagtcgatgt tgccccgtgg
     8701 aaattcattg ctaaattccc acctgtaata tcaaacggca ttgtaacaga gcgagctttt
     8761 aactctgtaa cgtttagatt tccgtgcaat aacggagagg ttgcggtgcc gctcacggta
     8821 agacgagcat tcacattgcc atcaaccgaa tcgccccgtt caagtagcgg tcgaatcagc
     8881 tttaagctta attggtcaag atgaatattg ccggataacg cacgagcctt acttaaatct
     8941 ttcatcacta aatcagtcga aagtctgccg ttattttcga cccttaaatc agatttaagg
     9001 gttaaattat tgtcagacat tttcagatca attttaagcg gtgaaacggt gagtgggaaa
     9061 ctttttcccc cctccatttt ttgaataaat ttaatcgcat tagaggttaa atccagattc
     9121 acttgaggct gtttgttttt aaaccaagct gcatcgcctt tggcattcac aatccctgaa
     9181 agctggctgt ttttctccaa aaattgttgc aataccgcta aatcaaagtt acggatttca
     9241 aaaggcactt taccctcaac accggcatta aatgcagtcg ggaaacaaag attaattttc
     9301 cggttatgcc aacaatgtgc ggaaatattg gcgttaatgg ctttattgtc atatttcaca
     9361 ttcactgctt tatctgcttg gaattgacca aactcggtgg attgaatcga aacttggctt
     9421 aattgccctt cccaaatttc tttcaaacgg tcaaattttc cagaaatttg caaatcagca
     9481 ccaaccggat tgccttttgc acttaatttc aagctatgat tttcttcatt tccttttagc
     9541 aataaagtgg catttcccac tttgatttca ttataggcaa attgacgtaa ccccaaggtt
     9601 aaatcccctt gaatggtttt ctcagtggta attttgcctt ttgcggttaa attttgcagt
     9661 ttaaattgct catagcctac atttgaggcc actaaatcta aatcaatgtt aggttctgaa
     9721 accttacccg ataatttggc attaccattc acgctggctt ttaaattcgg cactaaccct
     9781 tgcaaattag gggctttaat atccgcatag aaatcagatt tttcgcctaa cacgcctttt
     9841 aaatcgatct tattttcacc atacaccagc gataagcccg gaacatctaa aagttgttga
     9901 tgatcggctt ttaaattacc gcttaagtgt agatttttct gtaataacga acctttaata
     9961 tcaatattcg agacgtccgc tttccatccg ctagctgaat tgccccgtcc tgcataacct
    10021 tcggaagata aagaaccgga caataccgcc ggccagtctg ccagtaggga tttagtgtta
    10081 atatgctgaa gtttcaaatt tgaacgccac gcaacgccct cgctccaatc cactaaaccg
    10141 tcgatcttcg ccgtaccttc cagcgtattg agacttaaat cttgtatatt aaaatgggtt
    10201 aattcccctt tgccagttaa actagccgag cttgcaggca cgcccattcc tttggcactg
    10261 actttagcct ccaaagcgta atccaggaga ttgccattaa gcctcatggc gatattctct
    10321 aaactcagca catcaccatt ttgctgagga gcaaacggat aacgcattga ctcactcttc
    10381 agcgataaat caaagggagt tttcgcctga gccagtgcaa cattgccctc caacgaggcg
    10441 ctaattgcac cagccgtctt cacttttagg ctggttttgt catatagctc accggaaaga
    10501 gaggcttcaa tttgattgaa cggcaatttt actttcgccg tttttgcctc gtgaccactt
    10561 agcgtccaac ttagcggata attatcttgt aacgataaag aaccgcttgc ggttagatcc
    10621 ccttggtcgc ttttgaaatc taaacttttt aggttgatat gctgatcttt tgcttgagcc
    10681 tgaagctgta aagaggcaac atttaacaat gagatcggct caatcaaatt ccctttttca
    10741 tctttagctt tttgagcaat cgctacattc gcaatatcaa tctgttcaat attgagatca
    10801 agaggcaaac taaagcgaat atttttatcc aataacggct gtgctaattg tgctttaatc
    10861 gctgcccaat ccactttatt atccacctgt tcggcctgtg caacagtttt tctctgtaat
    10921 tggtgaaagc cctctacgac tttttcactg gttttttcca ccgcctcttg aatcacttta
    10981 tcagcaatct cttgtggatt tgtcgctgat aacgcctctg tttttgcatt tttttgtgca
    11041 aaatcgaccg cttgttcagt atcagtttcg tctaacttta aggctaaaag cagatttagc
    11101 ccctctaact gtgtcgggtg aacggtaata gcccgccctt taccagaaag tgcagtgtgg
    11161 aaatgattaa gatgaatatc catatcatca actttgacct tgatattctc taaattgata
    11221 ttttgagctg aaatccccaa tggcaaattt aattcggtga aaggttcggt ctcttctttt
    11281 ggctgagaag ggggtaattt agtcgtatca atcaacacct ctgtatcttt aaggctgaga
    11341 ttattcaaac acatttcata gtggagcaag cagctaaaac caatatgcag atctgcttgc
    11401 ccaaccgtta cattcacacc gtccatcaca aatcgggcat cagaaagctg taacccatct
    11461 tgcaggctac cttgcacttg cccaagttgt aatggctcta cgaatttatc tacccagctt
    11521 aacactttac gttgcccgta acctgtgcat agaaagagaa tggcgagtaa aagtagaata
    11581 aacgtcagac aaaagccgtg cttcaaaaac cgccactttg attttttagg ctgtgttgct
    11641 tgtggctctt gtgctgagtc cgtttgattt gtggctgttt gtttattttc gtcagtcata
    11701 atcgtgcata tttatgaggt gataaaaagt aaacaagcgg tatgcgaaat tttactgaaa
    11761 ttcgaccgct tgttttcatt tacagatcgg aacctaaacc aatataaatt tgtattcctt
    11821 tggaattatc tggtgatttt accggcgtgg cgacatcaaa tttaatcgcc ccgataggtg
    11881 atgcccaacg cacccctaag cccgtaccgt agtagagatc ctgagttttg aatttattcg
    11941 atgccaagcc tgcatcataa aaaattgcac cccaccaatt agggtaaacc tgatactgat
    12001 attctactgt gcctgtggct aaatgagagc ctccgacacg tttgccatta ctcggatcac
    12061 ggggggaaat atccttatag ccaaagcccc gcacactcat atcgccaccg gcaaaatagc
    12121 gtaacgccgg tggaatacgt tcaaattgat tggctttcaa ataccccaac tccgccctta
    12181 aatagaaccg atggttatca aagtaagttc tcgcccaaga tgtcgaggct ttataactat
    12241 aaaagtttac atctgaacct actgcacgac tcccccagtt taccgttaat ttttgtgtat
    12301 ccccccataa tgggtaaggc ttgccatctg ttctggttcg attcaatgat gccgttgggt
    12361 aaactaataa ggttttaaat cgatcattag cttgagtaaa agaatcgtaa cgggctttta
    12421 aaccaacaga aaatgaccaa ccggtttcgt gagtccagaa acgttgtaag ccaagggtgg
    12481 cagcggttga ttttgtatcg ttttgatctt cgttttctaa agtgccggat aattggtaat
    12541 aataatgtag cggatcttct ctaagtggaa tattataacc aaattcaaat gtctgctccg
    12601 gcttagaaac gtacgttcgg ctttcaatac tatgacctcg gctatttaac caaggtttct
    12661 tccagttaag ctgtaacctt gggccaactt cagtttcgta gcctatccca atttccactt
    12721 cattgcgttt tttaggctga aataacacat ttaaatccac taatttatcc tgttcattta
    12781 aatgtggctc aaccatcact gatgaaaacc aattactgga aaggtaatct tgggttaaaa
    12841 tcgaaagatc gttagctaaa tatggctcac cggaatgaat tttaagaata ttttgcaaat
    12901 attcttcttt gatttggcta tcaacaaacc ggatttgtcc ataatggtat cgttttccgc
    12961 tatcatagcc taaacgccaa tccgctttat gatcggtcgg ataaacttcc aaacggtgat
    13021 aaagccaatg accgtcaaaa taccctttac taaaagcggt actttcaata tcacctttaa
    13081 aattatcata ggttttatgg tttaaacgac taccttgttt tggggcttta ctgactagat
    13141 gagcgaaatc ttcgtccgtt tttgcatcgc cttgcaaaac aatatcggtt tcatcaattt
    13201 ttaccgtctc tttatctagc tcaacattta atactaagag cggtttcttt ccctcttgag
    13261 gtagctgcac aaattggtat cggctattat aatagcccaa ggctctcaga gctttatcta
    13321 ctgtggtttg caccaaatat tgataacgct ctgaaccatc tgcatattca ttggcaattt
    13381 gatctaaata tagctccaca tttttcttgg catctttacc ctgaatgcct ttgacttcta
    13441 aagtgactaa tggctctatt tctggctcat catcactatc ttccgctaat ttttcttgca
    13501 gattttcaac tcgctcacga tctacgtcag acagcctttg ctcttgattt gcttgtgcca
    13561 ttgaagcaaa agccactaaa cagcagaatg ttaaaaaatg tagttttgta ttcattagta
    13621 acctttttat tcttttggaa tgccacgcaa aagcggaata ctgtcataag gcggaacaga
    13681 acttaacgct ggctcttgct caaagagcat aatgaatggt ttgtcaggca ctgttttttc
    13741 attacgccac aagtttccaa cactcaccaa ttcaatatct tgaggtagtt gtgctaaatt
    13801 ttgcttcagt acactaatcg tattcttgcg agggtgtcct atcaccaccg ctaccccgtt
    13861 ttttcgtgcg tgattaattg catgtgcaaa ctgtttttgt acatcagcaa gcagatcgct
    13921 atcatctaaa aaaatgtctc tctccagcgt attaatacca aattgacgag ccgttttagc
    13981 cgccacacta ctgccaatag ttttactgtc taaaaagaaa agcgtatttt cttttaacac
    14041 tttcaacaaa tgttgcattg tagcagagtc tgaagttgct ccactgccca tatggttatt
    14101 taaaccaata gcatatggta cttgaccacg agaagtatga ataagtttcc gaattttctc
    14161 ttcgttatca ccaatatgaa tacccccctc ttcaattggc tgtttcgatt taggttccat
    14221 tggcaaatga atcaaaatat cccgtttttg gttataagcg tcctttgccc gttctgttgc
    14281 atagggtgca acaggaataa tcgccacgct taccgccttg ggtaaggcta agatttctcg
    14341 atcttctttt attcgatagc ccacatcatc aattacaatc gccatttgag ctgcttgtac
    14401 aagcggtgta aaaagcacaa acatttgcaa aaaaatgtta aaattcaacc gcttgttaat
    14461 ttgtttaaac atctatttca ccaaatttag aggattaatc ggcgtgcctt tacgggtaac
    14521 accaaaatag agtgcagaac ggctttgtcc cccactgtta ccaaccttcg caataacctg
    14581 tccgccttgc actcggctac ccttgctgac tgaaatagat tggttatagc cataaaggga
    14641 aatatcacca ttgccgtggt caatcgcaac catattgcca taccctgcaa gccattgagc
    14701 cattatgact cgcccgctcg ccattgctct aaccgaagta ccggcagaag caccaatcac
    14761 tacaccgtgc caattattac caaaaggagt gataatattg ccagacaccg gcatcgtata
    14821 tcgaccagcc ttgatcggtg ttctctcaac attctcagtt gttttggact gaccggattt
    14881 tgcctgtttt tcccgctgtt gttcacgttt ttctgcttgc tgagcctctc tttgcgcttg
    14941 ttctaattgt tgttttagtg cctgttcatt gctgcgtaaa ttctctaatc ggctttgatc
    15001 ctgctcaagc gttttatcga ttaaacgtaa ggtactttca cgctggcttt gtactttctt
    15061 taaatctttc tcttgtttct tttgttcatt aagttgcgtt tgatgatctt tttgctggcc
    15121 tttcaattca tcacgtctgg ctttaagatc agcttgggtt ttacgaattt caacgatcgc
    15181 atcaatgcga atattattca tatgctgata ataagcggtc attctttccg cattttttgc
    15241 ctcttcagac attaaacgct ctaagaccga agggttcacc ccagaacggt aggcagagtc
    15301 caactgctct tttaattttt ctttctgctg tttttccaac ttttctaaac gggcaatttc
    15361 agtctcagtc gctttaatgg tctggcgaac ttccgttaaa gacatttcgg ttttttgtaa
    15421 tttatccaac accttcccca tttctacttc ttggtttttt agggtagatt gcaacgcatt
    15481 acgtttttgc ttttgttcat taatttttga ggtttgctgt tggatttttt gctgaatctg
    15541 attaagatta tttgcaaaag aaaaaggggt agaaaagctt attaccccac tgaaaatagc
    15601 agtccaacag taagaattta ttcgtttcac cagcatacct ttgtttcttc aaaatattat
    15661 taaggttata ttctaatcgg ttatttgctt aagatcagct ttttagtgaa agaatttaac
    15721 tatctatttc aaaatataaa gaattttgct ataaatagca caatttcaaa tccattaatt
    15781 ttactcaaag ctaaggagtc attatgcaat tagtatttat ccgtcacggt ttcagtgaat
    15841 ggaatgctaa aaacttattt accggttggc gtgatgttaa tttaacagaa cgtgggattg
    15901 aagaagcaaa atctgccggt caaaaattaa aagcagccgg ttttgaattt gatattgcgt
    15961 ttacttcggt tttaacccgt gcgatcaaaa cttgtaacat cgtattagaa gaatcagacc
    16021 aattatggat ccctcaagtg aaaaactggc gtttaaacga gcgtcactac ggtgcattac
    16081 aaggtttaga caaaaaagaa actgctgaaa aatatggtga tgaacaggtt cacatctggc
    16141 gtcgttctta tgacatctct ccaccggatt tagacccaca ggatccaaac tcagcacata
    16201 acgaccgccg ttatgctaac ttaccaaaag atttaattcc aaatgcagaa aacctcaaaa
    16261 tcacccttga gcgtgtgtta ccattctggg aagatcatat tgcacctgca ttaatttcag
    16321 gtaaacgcgt attagttact gctcacggta actcattacg tgcattagca aaacacatcg
    16381 aaggcatttc tgatgcagac attatggact tagaaatccc aaccggtcag ccattagtgt
    16441 atgaactaga tgacaactta aaagtaatca gcaaacgtta cttataattg gtaaatttcc
    16501 gataaaaaat aaccgcttgt agtgcaacac attacaagcg gttatttttt gttaattttt
    16561 tgcaaatggc aaagaacaaa aataaaggcg aatcatacat tcgccttatt gttttaaagt
    16621 agattagaaa tctaacaact ctttctcttt tgctgctaat acttcatcaa cttttttaat
    16681 gaaggtatcg gtgatttttt gaatatcttc ttcagctttg tgttgttcgt tttcgctgat
    16741 ttctttatct tttaataacg ctttgatttg gtcattagca tcacgacgaa cattacgaat
    16801 tgccactttg ccttgctcac cttctgcttt aacgattttg attaaatcac gacgacgttc
    16861 ttccgttaat ggtggaagcg gaacacgaat ggttgtgccg gcagaagatg ggtttaaacc
    16921 taaatctgag gttaaaattg ctttttctac cgcagagatt aaagatttat caaatacgtt
    16981 taccgctaaa gtacgggcat cttcagctac cacgttcgct acttgacgta atggagtcgc
    17041 agagccgtaa tattccactt gaataccgtc taataaagaa ggttgggcac gacctgtacg
    17101 aattttcgca atatgccctt ttaaagcctc aaggcttttt tccatacgat cttgggtatc
    17161 tttcttgatt tcgttaatca ttgatttttt atccttttat ttagtaactg agagttaaac
    17221 agagaaaatt aattattcag aaatggttgt accttcttca gtaccgaata ccacattgcg
    17281 taacgccccc ggtttgccca tattaaagac acgaattggc attccgtggt cacgagcaag
    17341 cgtgaatgct gctaagtcca ttacttgtaa ttcttgctca ataacttgcg catacgttaa
    17401 tttattatat agttttgcat ctgcgtattt tgctgggtct ttatcataaa cgccatcaac
    17461 tttagttgct tttaatacca catcagcttc aatttcaata ccacgcaagc aagcagctga
    17521 atcggtggta aagaacgggc tacctgtacc ggcagagaaa atcaccacac gtttttcacg
    17581 caacatttta attgcttcag accagttgta agtgtcgcaa atcccattta attggaacgc
    17641 agacattaat ttagcattta cctctgcacg gtgtaaggca tcacgcatag ccaaaccgtt
    17701 cattacggtg gcaagcatac ccatatggtc gcccactaca cggttcattc ctgctttggc
    17761 taattttgca ccacggaata agttaccgcc gccaagtacc acaccaacct caacgccttc
    17821 agcaagtaat tctttaatct ctaacgccat acgatccaaa atagacgggt cgataccaaa
    17881 accttcactg ccttgtaggg cttcaccact taatttgaga agaattcgct tataaatagg
    17941 tttgctcatt ttaattgcct cttaactgta tggactaaac acaaaattac gttattatag
    18001 aacaatccaa tataacgata aactaaaaat attcactaca atgaaatcca aacaactttt
    18061 cggcattctt gtcgctattt cgctggcaac tgctgctagc tgtttaatgc taatcggatc
    18121 aggctttttt ccaaatccga gtatctttga agtcattttg ggcgtattcc tcatcatcgc
    18181 tcttgccagc tctaaatgga cttattattt actcttactg ccaatcagca tcgcttatgc
    18241 aatttatacc ccggttggga taaaattcgg taaaccgact tacgagtata tcgcctctat
    18301 ttttgctacc gatatgatgg aaagcaaaga gtttattgct caactgccga ttttaaatat
    18361 tgcggcgggc attgcgattg tactagcggt cattttttat cgaaaaatta ccaatcgcta
    18421 tcaaatccgt tttttacgca ataaaacatt cgtgatttcg gcttttgtat taatgctgtt
    18481 ttcccttgca ccgtttaaat tttttcagga gttctacaat tcgagcctaa aggtaaagaa
    18541 agaattggaa gtgctgaaca atttaacgct agattcacaa tggggacaat caaccctcag
    18601 ctcaacttca aactacgatg attatgtact gattatgggc gaaagtgcga gaaaggatta
    18661 tcaccacgcc tatggctatc cggctgccaa tacgcctttt atgagttcgg caaaaggaac
    18721 cttgattgac ggtttaacct ccggtggcac aaacactatc gcctcattac gcttaatgct
    18781 cactaagccc gatacggaaa aatgggaagc aaattatggg ttaaccttaa ttgatttaat
    18841 caaatctacc ggtatcaaga cctattggat ctcaaatcaa ggctatttgg gcaattacga
    18901 tacgccgatt tcctctatcg gtaataaaag tgatgtcaaa attttcacta aagccggcga
    18961 ttcattaaat accaatgtga gcgattttga attgttaccg cattttgcta aagtgattga
    19021 agaacctgct caagggaagc gtttcatctt tctgcattta tatggctcgc atcctattac
    19081 ctgcgatcgt ctcaccgatt acccgaaaat gtttgacgat gacaaactgc caaaacgcta
    19141 ctttaatgta aattgctacg tgtcatctat caagaaaacc gatgaattgc tgaaacgggt
    19201 atatgatttg ctagtgaaaa accaagaaaa tcaccagcgt tcattctcaa tggtttattt
    19261 gtctgatcac ggtttatcgc acgaggtttc aaaagagaac attgttatcc acaatggaaa
    19321 ggatagaagt aaattacact acgatattcc gctgtttaaa atttcaagcg atgataccca
    19381 acgtaatgag tataaagcct ttaaatccgg cttaaacttc actaatggta ttgcgaattg
    19441 gattggtatc gaaaatccgt tattagataa agaaattaat ctttttaacg aacaaaacga
    19501 taaaagtgat tatgggctaa agaaaatcat tgaaacgcag tctactgtag aagatccagc
    19561 tgttcctatt cctgaaagct acttatataa agcgactaat tagcaaaagt aagtaacaaa
    19621 aaagcaggct ttaagcctgc ttttttagtt tttagtatca gaaaaattaa gcgttaccgc
    19681 cagtgatttt cgctacttct gctgcgaaat cttcttctac tttctcaata ccttcaccta
    19741 cttctaaacg aataaagtta gaaactgaag tatttactga ttttaaatat tgacctacag
    19801 attgagatgg atccattaca aacggctgac cggttaatga aacttcaccg gtgaatttag
    19861 ccatacggcc ttcaaccatt ttttctgcga tttcttttgg tttaccagaa ttcatcgcaa
    19921 tttcaatttg aatttcacgt tcttttgcta ctacatcagc agaaacatct tctgggttta
    19981 caaattcagg tttgcttgca gcaacgtgca ttgctacttt cttaagctca tcttcagagc
    20041 ctgcacctgc tactaataca ccaattttcg caccgtgtaa gtattgagca ataacttcgc
    20101 cttctaagta ttgaacacgg cgaatgttca tattctcacc gattttcgca actaatgccg
    20161 cacgtttttc ttcaaattgt gcttgtaatg cttcgatagt tgtaccttta tttgcaactg
    20221 caaaatcagc aacttcgttc gctaattcta agaaaccggc atcttttgca acgaagtcag
    20281 tttcacagtt catttcaact aatacgccaa aacctgaagc gacacgagca aggattacac
    20341 cttcagctgc aacacgacct gcttttttag ccgctttcgc ttgaccggat ttacgcatat
    20401 tatcgattgc taattcaata tcaccgttcg cttcaactaa tgctttttta cattccatca
    20461 tacctgcgcc ggtacgttca cgaagttctt taactaatga tgctgtgatt tcagccattt
    20521 taaattcccc ttatttgata tggtaaaaca ggctctcacc tgcctagaaa tttcattgtt
    20581 tagggcaggt taaaacctgc cccctcaact gaattattcc gcagaagctt cttctgctac
    20641 ttcaacagtt tcaacaccgc gaccttcttt gattgcagca actgctgaat ctaagtaaag
    20701 ttggatagca cgtgttgcat catcgttacc gggaatgatg tagttaacgc catctggagt
    20761 tgagttagta tcaacaatcg caaataccgg aatacctaag ttgtttgctt ctttaattgc
    20821 gatatgttcg tgatcagcac cgataacaaa aattgcatcc ggtaaaccgt tcatatcttt
    20881 gataccgcct aagcttaact ctaatttttc taactcacga gtacgcatta acgcttcttt
    20941 tttagtgatt ttgtcaaaag taccgtcttg agtttgagtt tctaaatctt ttaagcgttt
    21001 gattgattga cgaactgttt tccagttagt caacatacca cctaaccaac ggtggtttac
    21061 gtagaattgt tggctctcta ctgccgctgc tttaacagca tcacttgctg cacgttttgt
    21121 accaacaaat aatactttac cattgttact agcaatgcga gttaattccg ctaatgcttc
    21181 gttgaataaa ggtaaagttt tttctaagtt gattacgtga acaccattac gagcaccaaa
    21241 gatgaatggt ttcatttttg ggttccagta acgtgtttgg tgaccatagt gaacgcctgc
    21301 gttaagcata tcgcgcatag aaacttgtgc cataagaatt ttccttcaaa gttgtttgtt
    21361 ttgccactta tgaacggcaa aacggggttt agcctccaca tatcctagaa aatcaatctg
    21421 ttaaagacac cccaattcct agcttgtgat atgtgtgtgt tttagtgtta aaaaataaat
    21481 gtgtacgttt tgcctgaata gacaaaaacg gggcgtatta tgccaaaaaa caaacaattt
    21541 gccaattatt ttattgctct cttcgcatta ctaaatcaag ctcaaaaata aaaaccgttc
    21601 tcattattga ctaaaaaaat ggggaggttt agaatgtctt tcattctgtt atgaaaacct
    21661 gtctgaagga gactatcatg aaaaaaacac tttctgcact tgctattgct gcagccactt
    21721 ttacatcaac ttcaacgctt gctgcaaatg aagtgaatgt ttattcttac cgccagcctt
    21781 acttaattga gccaatgcta aaaaactttg aaaaagatac tggcattaaa gtaaacatca
    21841 tcttcgctga taaagggttg gttgatcgtg taaaacaaga aggtgaatta agtcctgctg
    21901 atgtgctttt aacagtagat atttcacgcg taatggaaat tgttaacgct gatcttgcac
    21961 aaaaaattga ctctaaagtg ttagaaaaaa atattcctgc acaattccgt gactctaacg
    22021 accaatggtt tggtttaacc acacgtgctc gtgttatcta cacgtcaaaa gatcgtgtag
    22081 gtaaattacc agcaggcttt gactacctag atttagctaa accagagtat aaaggtaaag
    22141 tctgcgtgcg ttcaggcaaa aactcttaca atgtctcact attcgcggcg atgatcgaac
    22201 attacggcat tgaaaaaacc aaagcattct tagaaggctt aaaagcgaac ttagcacgaa
    22261 aaccacaagg tggtgaccgt gatcaagtaa aagcaattaa agaaggcatc tgtgattact
    22321 ctatcggtaa cagctactac tacggcaaaa tgttagatga tgagaaacaa aaatcgtggg
    22381 ctgaagcagc gattattaat ttcccgagtg gtgaacacgg cacgcacaaa aacatcagcg
    22441 gcgtagttat tgcaaaacac tcaccaaata aagcaaacgc ggtgaaatta attgaatacc
    22501 taagtggcga aaaagcacaa ggtttatatg ctgaacttaa ccacgaatat ccagtaaaag
    22561 aaggcatcga gccatcagca atcgtaaaag gttggggtac gttcaaatca gataccatca
    22621 aacttgaaga tatcgcaaaa aattacgaag ccgcattaaa attagttgat gaagtgaaat
    22681 ttgacgattt ctctgagaaa aaataatcaa ccgataagcg gtcatttttc cacaaaaatt
    22741 tgcaaaattt tgttaaaata caaccgcttg caaaaggacg cattttgcgt ccttttattt
    22801 ttttatgaaa taacaggctt aaagaaaaat gcgatcacaa ttttgctgga aaagtattgc
    22861 tgccctaaca acttttatcg ttttgcttcc tcttattgca atttgctatc acgcattgca
    22921 aggggataat gaaaaccttg ctcacctttg gcaaacaatg ttgccaatct atcttaaaaa
    22981 ctcaacttta ttagtattag gaaccgtttt ccttgcactg atttttgctc tgcctaccgc
    23041 ttggattgtg gcaaattacc gtttttgggg gcaaagaacc ttacaatggt tactttgttt
    23101 gcctctcgct atgcctgctt atttaattgc ctatttatat accgatttat tagattactc
    23161 aggtgctttt caaggctggc tgcgtagtat ttttggctgg actcatccgc aagattactg
    23221 gtttcctcaa attcgtacat tgtatggtgc ttgctttgtg cttgcgttag tactatatcc
    23281 atacattttt ttattagtgc gagttgcctt attagaacaa tctgaaaact taacacacag
    23341 tgcaaaaatg ctcggggctt cgccctctca gttgttccgt cgaattacgc tgccattaat
    23401 tcgaccttct gttgccgtag gcattgcatt agtggcaatg gaaacgcttg gcgatttcgg
    23461 tactgtggcc tattttgccg tgccaacact tactacggca atttatgatt cgtggctagg
    23521 ctatcacgat cttggtactg ccagccagat tgcgatcttt atgttgctaa tgattttcct
    23581 gtttttaagt ttagagcaat atagtcgccg taaacaaaaa agctatcaac gtggctatga
    23641 aaagaaatca gcctttaaat ttttaactgg ttggaaatta gcattagccc ttgcttggtg
    23701 ctggggttta ttggcgttag cctttttcat tccgtttggc aggttgctct attgggcata
    23761 cgactatttc gagcaagcgt ggaatttaga ctttgtccaa ttttcgctta atagtttgaa
    23821 agtatcgatc atcgcctccg tgataacggt actgattgct ctacttctgc atttttctaa
    23881 acgtttgaat acccgcaaaa ttttagtcaa aaatgaccgc ttgtcattac aacttgcctc
    23941 actgggctat gcggttcctg gcacagtatt agcgatcggt ttactttcgc ctttaacatt
    24001 tgccgatcat caactccatg cttggctaaa aagccttgaa ttatcacccg ttggattgat
    24061 tttttcaggc tcactctttg cattagtatt agcttatacc atccgatttt tagcaatggc
    24121 aattggcagc cttgaaactt cgctaaataa aatctctcca tcgctggata tggcgagcca
    24181 aacgcttggt aaaaatggct cagcaatgtt agtaaaaatt catatccctt taatttataa
    24241 aggtatttta actgcaggat taatggtctt tattgagagt atgaaagagc taaatgcttc
    24301 tctgctactt cgcccattta attttgatac actcgcaacc tatgtgttta cctttacatc
    24361 agacgagcag cttgagcgtg ctgctctgcc tgccatcgta ttggtgttag tcggtttact
    24421 gcctgttatt tggcttacca gatcccttat ttcgcaatct gaaaaagaaa gataaaggaa
    24481 ttttatgtct gttttaacta ttaatcatct caacctcaat ttcggcagta caaaggtttt
    24541 acaaaatctc catcttgctg tgaatcaaaa tgaaattatc tgtttgctag gtgcaagtgg
    24601 ctgtgggaaa actacactgc tcaaagccat tgcaggttta ttgccaattg agcagggaga
    24661 tattcattta gcgggtgaat gcctaaaaag taaagccgtg gaagagcgac aaatcgggct
    24721 gattttccaa gattacgctc tttttccaca cttgacggta gccgataata ttcaatttgg
    24781 cttatccaaa ttgccaaaag tacaacaaaa agcaattacc gaaaaaatgc tttcagttgt
    24841 gcatttacaa ggctttgaaa gccgttttcc acacgaactt tcgggcgggc aacaacagcg
    24901 tgtcgctatt gcccgagcat tagcctgcca gccagaattg ctactgttag atgagccgtt
    24961 ttccaatatt gacagccaaa ctcgctatgc aatgattcaa gagatcaagc aaatcttaaa
    25021 aagccaaaat gtgcccgcta tttttgtaac ccatagcaaa gaagaagcct ttgcatttgc
    25081 cgataaaatt gccgtgatgg atcaagggaa aattattcaa tttggtaagc caaacgagct
    25141 ataccattct ccagttaatc catttgtggc agatttttta ggtggcacaa actatcttaa
    25201 ctgtaatgta acggaagaca acgtgttatg cagccctatt ggcgagttcc gactcttccc
    25261 tgaaatgaac gttcagaaag ggcgttaccg ttggcttctt cgcccagaac agattatctt
    25321 aaaacccaat gagctaggtt taggtaaagt ggtaggcaaa ctgtttttag gcctatacta
    25381 ccgctatcag gttgaaatta aaggcattga gatagtaact taccaatctc aagagctgaa
    25441 aattggcgaa caagtggaag tgggcttcca agtaagagag tttatcctat tttaaggaga
    25501 atatatgaaa attgaagttt ggtcagatta tgcctgcccg ttttgttaca tcggcaaacg
    25561 ccacttagag caagccctag cccaatttga aggcgaggtt gaagtggttt tccgagcctt
    25621 tgagcttgat ccgcacgcta acggcgaacc ggagggcgat attcagcaac gcctaatgcg
    25681 gaaatatcaa aaaaccgcag aacaagctga tgaaatgatt cgttatgtgg aacaagccgg
    25741 caaacaagct gggctagatt tgcgttaccg caccacccaa tacactcgca cctttgaagc
    25801 tcatcgcttg gcgaaatttg cagaaagtaa agacttaggc gaagcaatgg ttgaacgttt
    25861 attcaaagcc tattttaccg ataacactat tctagctaaa cgcacagagc ttatcagttt
    25921 agccttagac attggcttag agcgtgatga aatcgctcaa ctgctcacag gtgatgattt
    25981 cgggcacgaa gtccgtgaag atgagcgagt cgctcacaaa tatggcattc acagcgtacc
    26041 gttttttgtg atcaatgaaa aactcggggt atccggggct caaccgccag aaatattact
    26101 tgacgctatc aaacaggcat tgcaaaaata atccgaaaaa agaccgcttg ttaagctaaa
    26161 caagcagtct tattcttctt ataatttaca atttattttt tggtgatcgc acctaaaata
    26221 ccacgcataa tttgtttggt gacttggttg cgtaaatttc tgccaactga atgcgccact
    26281 tggctaacca cttgttcggt aatcgattga tcttttttct tcttcgagcc aaaaatggaa
    26341 gagagaatac cgccaaagaa gtcattgttt gcttcttctg ccgcagcctg ctctgcttta
    26401 attgcttctg ctttcgcatt aagtaattca aacgcagatt cattatcgac atattggctg
    26461 tagtgatgat agagatcatc ttgcttcact aaactatcac gttcgcctgt ggctaatgga
    26521 gctaattggc tttttggtgg atagatatag gcaatttcta caggcgttgg catacctttt
    26581 tcatctagca ccgaaaccaa cgcttgcccc acaccaagtt gcgtgatggc ttctaccaca
    26641 tttacctctt tattcgctcg gaaagtttcc gctgctgatt ttaccgcttt ttgatcacgt
    26701 ggcgtgaaag cacgcaaagc gtgttggata cgattgccaa gctgccctaa tactgaatca
    26761 ggtatgtcca acggattttg cgtaacaaaa taaacaccca ccccttttga gcgaattaaa
    26821 cgaaccacct gttcaatttt atccaccaat gccttagggg catcgtcaaa caataaatga
    26881 gcttcatcaa agaataaaac aaacgtcggt ttttctgggt cgccaacttc tggcaaattc
    26941 tcaaagagct ctgccataaa ccaaagcagg aatgcactgt acactcttgg tgagttaatt
    27001 aatttttctg cattcaacat attgattaca ccacgcccat tacgggtttg gatccaatcg
    27061 tgcaaatcta atgcaggctc accaaataaa ttatctgccc cttcattttc aagccttaat
    27121 aacgcacgct gaatagctcc aacgcttgct gcagaaatat gcccatattc cagttggaat
    27181 tctttcgcat tatctgcgac aaatttaagc aacgcacgca aatcttttaa atcaattagc
    27241 aataaacctc tgtcatctgc cacacgaaaa acgagattta acaagcctcc ttgggtatcg
    27301 tttaaattga gtaaacgaga aagtaacatc ggtcccattt cggaaatagt gattcgaagt
    27361 gggatacctg atgtaccaaa tacgtcccaa aacgaaactg gatagccctt taagtaatct
    27421 tctcccccta aattaaactg taaaatgcgt tctgcaattt ttcctgaaaa attacccgct
    27481 tgtaccgagc ccgaaagatc accttttaca tctactaaaa atactggcac gccatcatca
    27541 ctcaaagatt ctgccaattt gcgtaaagta accgttttac ctgtacccgt agccccagca
    27601 attaaaccgt gccgatttgc cattttggca ttaagcgaaa taactttgcc tgtttctgtt
    27661 cgagcaattt gatacaaact catctttcat tctcttaaag gtaaattaat tttttgttct
    27721 catcatataa aaatttatca cttaattacg gctattcttt ttcgtttttg ccaagaacgt
    27781 ttttttactt cttgagcggt tcactttcgg taaagtcagt aaggattcct tgtcgtattg
    27841 actcacagga atctgatgcc caatatactc ttcaattgca ggcaaattaa ccgcataacg
    27901 ctcgcaagca aaactaattg aatggccgct ctcccctgct cgccccgttc taccaatacg
    27961 atgaacgtaa tcttctttat catcaggcag atcataattg aaaacgtgcg tgacatctgg
    28021 aatatgcaat ccacgagccg caacatctgt taccactaaa atatccaaat tgcctttggt
    28081 gaaattatcc agcaaagaaa ggcgtttttt ctgcggaata tcgccggtta gcattccaac
    28141 ccgatgtccg tctgccgata aatactgcca gatctcttcg catttatgct tggtgttggc
    28201 aaaaatcata caacgctccg gccactcttc ctcaagcaat gtcagcaaca atgccatttt
    28261 gtcttcattc gaggggtaaa atagctcttc tttaatacga tgtccggttt tttgtagtgg
    28321 ctcaatttca atatattccg cattatccat atcttcatag gcaagttccc gcacttttgc
    28381 cgaaagcgtt gccgaaaaga gcaaagttaa acgttctgaa ggcttaggtg cttttcgcat
    28441 taaataacgg atatctttaa taaaaccaag atcaaacatt cgatctgctt catctagcac
    28501 aatcacttga attttgtcta aattgataat gccttgtttt acatagtcaa tcactcgacc
    28561 tgttgtaccg acaagaatat ctaccccttt ttcaatttct tgaacttgtt tgtcgtaacc
    28621 atcaccaccg tatgccaaag ctagttttaa atcagaatgt tttaaaaaca gctcggcatc
    28681 tgccccaatt tgaaccgcca attcacgggt tggagcaaga attaatgctc tcggctgatt
    28741 ttttgacgtt tcgatttcgt tattcaataa atggttaaaa gttgcaatca aaaaggcaag
    28801 cgttttccct gtacctgttt gagcttgccc tgcaatatct ttgcctttca gcgtaatcgg
    28861 aaaggttttt gcctgaatcg gcgtacaaaa ttcaaagcct ttgctatcaa gggcatttag
    28921 tacattagcg tgaatcggga agtcaataaa gcggtgttcg gtaagatgat tagacatagt
    28981 atttccttga taattgtgat gtgacaagcg gtctttttta cacatttttt tgcaaaatag
    29041 catattgggc gttttttctc aaatttaacc gcttttgagt ttattcggca aaatagattg
    29101 gaaaagctct cggcttttca gcggttgtga ccctaaatag ggctttagtg ccattcgggt
    29161 aaaacgtttc gctgcttgtt gagtactttt ttctgaaaaa tccaactgag caaacgctaa
    29221 taaatcactg cctaaaaagc tctggttatt ctgtaataat gaggcgataa agccctgatt
    29281 ttcctgaaat tgataggtca ttttcggatc aactggcaaa ccggttgccg cacagtgcgt
    29341 aaaatccacc ccataaccca atgcttttaa cgtatgaaat tcaaaggtgc gtaaaatcgg
    29401 ctcaatctgt ttttgtgtgg caagctcggt aatgcaacgt aaataatgct gaaataattc
    29461 agggtaagcg gtctgatttt ccaatactct tgcaagtacc tcgttgatat aaaacccact
    29521 ataaagtgaa agcgtttcca tcggcaacgt taatgcagcc ggttctgctt tggttaaagt
    29581 tttcagatcc cctttacccg accaacgcaa caacaacggc gtgaacggct gtaaaaccgc
    29641 tttcaacggc gagcgagccc gccttgcacc tttagcaagt aaagtaatcc gcccgtgatg
    29701 ttcggtaaaa aactccacta ataaactgtt ttcgctgtat tcacgccgat gaaggacaaa
    29761 ggctcgttgc cattggtcta ttgtcataat ttcttgttaa ttatgaggtt gtaatttact
    29821 tctgccaaat ctccccctcc cctctttgct aaagagggga gatcttgcag agtatatttt
    29881 aaagtcattt tcactattta accttttata tagataggaa gatgaattta aaatttctgg
    29941 agaactagtc cccctcttta gaaaagaggg gttaggggag atttgattac gatattaatg
    30001 ctataacggg agccaactac tcgtccatat accctaaact tctcaatgct ctttcatcat
    30061 ccgcccaacc agcttttact ttcacccaaa gctcaaggtg cacttggttg tcaaataggc
    30121 gttccatatc ttttcgagct tcaatgccga tggttttgat tttttgcccc cccgcaccaa
    30181 taaccatttt tttctgacca tctcgttcta ctaaaatcaa gccattgatt tcatacaccc
    30241 cacgctcatt cattttaaat tgttcgattt ctaccgttac cgaataaggt aactcttcac
    30301 ctgtaaaacg cattagtttt tcacgaataa tttctgatgc cataaagcgt tgagagcggt
    30361 ctgtcacata ctcttcagga aagtggtgct caccttgacg cagtgattga cggacaaatt
    30421 tctgtaaaat atgcacattt ttaccccgtt gtgccgaaat tggcagaatt tcagcaaaat
    30481 caaatttttg tgaaagctcg gtaatatgcg gcagaagttc ttctttttcc ttgatgttat
    30541 caattttatt gattgccaat aaaacagggg cttttgccga acgcaatttg tttaacacca
    30601 tttcatcatc ttctgtccat tttgtgcctt ccacaacaaa gatgatgaga tctacatcgc
    30661 caatagcaga acttgctgca cggttcatta aacgattaat cgcacgtttt tcttctatgt
    30721 gtaagcctgg ggtatctaca taaatcgctt ggtattgatc ttcagtgtga ataccaacaa
    30781 tacgatggcg agtcgtttga gctttgcgtg aggtaatgga aattttttgt cctaaaatct
    30841 tatttaataa tgttgatttc cctacatttg ggcgaccaac aatcgcaata aaaccacaat
    30901 aggtttttgc aggagtttga atttgttctg tcattttgtt ttcctttcat tctgtggaat
    30961 gaatttgatg gtgcaagcgt ccacgcttgt accatttaat taaatcttta gcacaagcga
    31021 ggacgcttgc gctatcttac tttttcgttt taaccaccgc taacgctttt tctgcggcat
    31081 tttgttcggc ttttcggcgg ctggtgccaa tgccgataaa cacttcctcg acgttaatca
    31141 ctttacaggt tacacggaaa gtttggttat gagcttcgcc tttaatatct aatacatcat
    31201 attcaggcaa tggcaatttt ctaccttgta aaaactcttg caggcgggtt tttggatctt
    31261 tttgtgaatc gcctggactg atatctttaa gcaaatctga ataccaatct tccacctttt
    31321 ccattgcttt tgccatatct tgatcgagat aaatggccgc aataatcgct tcaacacagt
    31381 ccgataaaat cgattctcgg cgaaaaccac cactttttag ctctcctgga cctaatttta
    31441 ggtagtcgcc taaatcaaat ttgcgagcaa taatcgctag agtttgctca cgcacaagag
    31501 ttgctctcat acggctaagc tcaccttcat tcgcttttgg aaatttgtcg tataatactt
    31561 taccaatagt aaaatttaaa attgaatcgc ctagaaattc aagacgctca ttgtttttgg
    31621 ttgccgcact gcggtgtgtt aaggcctgaa tgaggtaatc aaggttatga aattgataac
    31681 ctaatttttt ctgtaatcgt tctagttgca tagtttatgt gaataaaggg gcgtatctca
    31741 tacgcccctg ttaagattaa ttgattgagg taaacattct agaaaaacga agccccgttg
    31801 ggaattcatt tgctttttta tctaaactta accaaataaa agtggcttta ccaacgatgt
    31861 ttctctcagg cacaaagccc cagaaacgac tgtcttcact gttatcacgg ttatcaccca
    31921 tcacaaaata gtatccttgt ggcacaaccc attcaccttc tgcttgccct tcttgttggt
    31981 agaaataagg tgcatagtta aatgccattg ggtgatttaa aatttgatga gttacattac
    32041 ctttttcagt gcgttctacc tgcatttcac cgtgatagaa aaactcagga tttggcttgc
    32101 cttcgctgta ttcaaatacc tttgtttcgc cattggcttt agtaaccgtt aattgctgag
    32161 ttgcaaaatc atatttaatt ttatcaccac ctactgccac cacacgctta atataatcaa
    32221 cgtgtggttg tgccggtgct ttgaatacaa tcacatcgcc tcgttctggt ttgcccgttt
    32281 caatcaaggt gttttgccag ataggatctt taatgccgta gctgaattta tttacgacta
    32341 aaaaatcgcc tacacgcaag gttggctcca ttgaaccact tggaatttga aacggttcaa
    32401 ataagaacga gcgaagtact gtaacaaaga ataaaatgcc gaaaagtgag gcaaaaaatt
    32461 cgcctactgc ggatttaggt tgaatttccg ctatttcttc agcggttaat tctctgccta
    32521 aacgtttttg ttgtagaaca atcgcctgtt tacgtcttgg gtcagcactg aatttgtaaa
    32581 acgcccaaaa tccaccacaa ataataacca aggcaactaa aataatggaa atagtatttg
    32641 gcagttgcat tgaatcaagc cattgccaaa taccataaat aatacctaga aaaataattg
    32701 gcataaattg tgccactgaa tgctcctttt tattcaaaat tgcaaagttt tctcaaaata
    32761 tgaccgcttg caagcggtcg tattttacac gaatattgac aattaatcct tacccacatg
    32821 aagaattgcc aaaaatgctt cttgtggcac ttctacgtta ccgagagatt tcattcgttt
    32881 tttaccctct ttttgttttt gtagcagttt cttcttacga cttacatcac caccgtaaca
    32941 ttttgctaat acgtttttac gcaactgttt taccgttgag cgagcaatga cgtggttacc
    33001 aattgccgct tgaatagcga tgtcaaattg ttggcgtgga ataagttcac gcattttttc
    33061 cactaattca cgtccacgat acgccgcatt tgcacggtga acgataatcg ccaacgcatc
    33121 aacacgctcg ccgttaatca taatatccac acgcaccata tcagccgttt ggaaacgttt
    33181 aaaaccgtaa tcgagtgaag cataaccacg agaggttgat tttaagcggt cgaagaagtc
    33241 taacactact tcgcccattg ggatttcgta agttaaggcg atttggttac cgtgatagac
    33301 catattggtc tgtacgccac gtttttccac acaaagggta atcacgttgc ctaggaattc
    33361 ttgtggcaca agcatattac attctgcaat cggctcacga atttctgcaa tattgttgat
    33421 tgctgggagt ttcgatgggc tatccacata gatcgtttcg ccactggttt gcaccacttc
    33481 gtaaactacg gtcggagcgg tagtaatcaa atcaagatcg tattcacgct ctaaacgctc
    33541 ttgaatgatc tccatatgca acaagcctaa gaagccacac cggaagccaa agcccaacgc
    33601 acttgaagtt tctggctcat agaacaatga cgcatcattt aggcttaatt tgcctaaagc
    33661 atcacggaag gcttcgtagt cgtctgaact aatcggaaat aaccctgcat aaacctgtgg
    33721 ttttactttc ttaaagcccg gtaatacttc agttgctggg ttgtggtggt gggttaatgt
    33781 atcgcccact ggtgccccta aaatatcttt aatcgcacaa actacccaac ctacttcacc
    33841 tgtttttagc tcggtagtat ccacttgttt tggcgtgaaa ataccaaggc gatctacatt
    33901 gtaagactgc cctgtactca tcactttaat tttatcgcct tttttcagca cgccattttt
    33961 cacacgcact aaagacacaa cgcctaaata gttatcgaac caagagtcga taattaacgc
    34021 ttgtaatggt gcttccgcat cgccttctgg tgcaggcatt ttcttcacga tttcttctaa
    34081 aacatcttca atgcctaaac ctgttttagc tgaacagcgt actgcatcaa tggcatcaat
    34141 gccgacaata tcttcaatct cttctgccac acgctcaggc tcggctgctg gtaaatcgat
    34201 tttatttaaa attggcacaa cctctaaatc tatctcaatt gcggtataac aattcgccaa
    34261 cgtctgtgct tccaccccct gccctgcatc aaccactaat aaagcacctt cacaagcagc
    34321 aagcgagcga gaaacttcat atgagaaatc cacgtgccct ggcgtatcaa taaagttgag
    34381 ctgataaatt tcgccatctt tcgctttata gtttaaggtt acactttgtg ctttaatagt
    34441 aattccacgc tcacgctcaa gatccattga atctaatact tgagcctcca tttcacgatc
    34501 tgataagcca ccacaagttt gaattaagcg gtctgataaa gtcgatttgc cgtgatcgat
    34561 atgagcgata atcgaaaagt tacgaatatt ttgcattttc atcgggcagt taatgtcctg
    34621 ttttgttatt tgtttatcaa aaattaatcg gggaattgta cttgaaatac aaggttttgc
    34681 aaagaaaaca aatagcaata agcggttatt ttttcctaaa aatgtgcaaa tttcttgaga
    34741 aaaatgaccg ctt
//
LOCUS       DANLRW010000012        34753 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.012, whole genome shotgun sequence.
ACCESSION   DANLRW010000012 DANLRW010000000
VERSION     DANLRW010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 34753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34753
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.012"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            43..1065
                     /locus_tag="PXA71_000468"
     CDS             43..1065
                     /locus_tag="PXA71_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5104616.1"
                     /translation="MANGTSRNRRSSGRVTLADVAKVVGVGQMTVSRALRTPEMVSEP
                     LRKRIEEAIIELGYIPHFSARQLASAESHNLVIVTTSISSTENTLILSALRKSVADSA
                     LQMVILIADQESWFQELINHAPQAIVFLNLDCPPNVREWIKNSNIPTVEIGAIKKEPI
                     HLSVGIDSHEAMEKMIHFLVKKGYREIGLLSAKQDLSIFKQYLESWHTTLFAHHISPL
                     KIHHVVEDISFSAGATLLTEALLNWEAIDALVFLSDELACGALYEALRRHMSIPKDLA
                     IAGLGGLEVGSISYPKLTTIAIPYEQMGKIAGKQLLTLLSGKTLSAEEMIVKLPTKLV
                     IRDSAA"
     gene            1178..1591
                     /gene="secE"
                     /locus_tag="PXA71_000469"
     CDS             1178..1591
                     /gene="secE"
                     /locus_tag="PXA71_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDL5104617.1"
                     /translation="MATEIKTKTPEQVEQKGGKSKGANTALWLVAIVFLAVAAVGNAY
                     FSSHFSLIVRVLLLVVLLVGAVALAAITNQGQKAIHFIKESRTELRKIIWPTRPEATQ
                     TTLIVLAMCVVVSLVLWGIDSIIVALITFVTSLRF"
     gene            1593..2156
                     /gene="nusG"
                     /locus_tag="PXA71_000470"
     CDS             1593..2156
                     /gene="nusG"
                     /locus_tag="PXA71_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDL5104618.1"
                     /translation="MSEVEVKENGSKRWYVLQAFSGFENRVAVTLREYIKLHKMEEQF
                     GEVLVPTEEVVENVGGKRRKTERKFFPGYVLVEMEMNDDTWHLVKSVPRVMGFIGGTA
                     DRPAPITKREADRILNRVQETAEKPRHRKEFQPGESILVTEGPFADFSGTVEEVDYEK
                     GRLKVSVSIFGRATPVELEFSQVEKQS"
     gene            2389..2817
                     /gene="rplK"
                     /locus_tag="PXA71_000471"
     CDS             2389..2817
                     /gene="rplK"
                     /locus_tag="PXA71_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDL5104619.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     RTESLEKGLPIPVVITVYADKSFTFVTKTPPAAVLLKKAVGIKSGSGKPNKDKVGTVT
                     QEQIRQIAETKAADMTGATIETKMKSIAGTARSMGLIVEE"
     gene            2822..3511
                     /gene="rplA"
                     /locus_tag="PXA71_000472"
     CDS             2822..3511
                     /gene="rplA"
                     /locus_tag="PXA71_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDL5104620.1"
                     /translation="MAKLTKKMKAIKAGVDSTKAYDINEAVEVLKKFATAKFVESVDV
                     AVNLGIDSRKSDQNVRGATVLPHGTGRTARVAVFTQGANAEAAKAAGADLVGMEDLAE
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKSGQ
                     IRYRNDKNGIIHTTIGKADFSAEQLKDNLNALLAALTKAKPTTAKGIFIKKVSISTTM
                     GAGVAVDQASL"
     gene            3573..3992
                     /locus_tag="PXA71_000473"
     CDS             3573..3992
                     /locus_tag="PXA71_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104621.1"
                     /translation="MLRLLSFCFIFLLSACTVLPQIKQLPPQVESVKSFKVENNGQQS
                     LLLIQFYENKWRWIQTDPLGAPIARVWLTKKGWEPDGFVMPNKQAQLLFTALVNALNP
                     HSPPFYLDKGWKIEREKSQFTIWLPDSSKWKVEILGE"
     gene            4079..5301
                     /locus_tag="PXA71_000474"
                     /pseudo
     CDS             4079..5301
                     /locus_tag="PXA71_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005544283.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
     gene            5294..5698
                     /locus_tag="PXA71_000475"
     CDS             5294..5698
                     /locus_tag="PXA71_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005557532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydratase"
                     /protein_id="HDL5104622.1"
                     /translation="MHKFTFPIEQIAPLVPHSGNMILLDRITAFGEDFLTAETNIRPD
                     NPLIKHGKLATYASIEIMAQAGEPVRLGYLLGTRKLHLHRQEIPIGSQLQIQIKMSIQ
                     DATGFGVFDCQLIDLADNQVLLEGALNVFSPK"
     gene            5798..7231
                     /locus_tag="PXA71_000476"
     CDS             5798..7231
                     /locus_tag="PXA71_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDL5104623.1"
                     /translation="MQEAYDIQHLCTRKEDKSFDRKSARKEPKEILRHLIGFANADGG
                     LLVIGIEDNGEITGFNYQKAHQPEEFIHALHNLQKMPIPVTYQQIEVVNSRGLADFVL
                     LFEVTASSGRVITSHDDRVFLRSKDQTLELNFEQRLQLEYEKGQRAFEEQPIARADFT
                     DLDMDLLEQYRQKLHTDRSIEEILKARDLINKEGQITNACILLFGNNPTRYFPNARLR
                     FLRYEGKAPLTGRTFNVVKEFMLEEPIPKLLESAKAVLKSQLREFQRLDENGQFTKID
                     EYPEFAWLEGIVNAIAHRSYSNQGDCIRISMFDDRLEIFSPGGLPRPVTLENMYYTRF
                     SRNPKIARVLYEFGWVKELNEGVNRMAEEMNAYQLNTPSYFEPNENAVRLILENNIEH
                     RTLRALERIEEIFTQDIMATLNKNEVTILQYLYENEMITVKIASEILDRSKELSRRIL
                     KSLEQKNILTWHGLSPKDPTQYYTLKK"
     gene            7245..7973
                     /gene="fabG"
                     /locus_tag="PXA71_000477"
     CDS             7245..7973
                     /gene="fabG"
                     /locus_tag="PXA71_000477"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL5104624.1"
                     /translation="MNNTVLITGSSRGIGKAIALTLAQQGFDIVVHCRSRVEEAEAVA
                     QAVRNLGKNARVLQFDVADREKVRSILEADVEQHGAYYGVVLNAGLTRDNAFPALTDE
                     DWDSVLRTNLDGFYNVLHPIMMPMIRRRKAGRIVCITSVSGLIGNRGQVNYSASKAGI
                     IGAAKALAIELAKRKITVNCVAPGLIDTDILDENVPIEEILKMIPAGRMGDPDEVAHA
                     VAFLMDEKATYITRQVIAVNGGLC"
     gene            8036..9181
                     /locus_tag="PXA71_000478"
     CDS             8036..9181
                     /locus_tag="PXA71_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase"
                     /protein_id="HDL5104625.1"
                     /translation="MKRVVITGIGVVTAFGKEWAEIHGYQPPKHWNRKQLRSLGRVSQ
                     FVVEASERALAQAGLLDENGVIFDWLKDRRMGVACGSSTGSTNDIKDAAELLMTGKSD
                     GFNANTYVRMMPHTTAANIGIFFGLTGRIIPTSSACSSGSQGIGYAYEAIKYGMIPMM
                     LAGGGEEFCASKVYVFDSLYAASRRNDNPKGTPRPYDKDRDGLVIGEGAGMFVLEELE
                     HALARGANIIAEVVGYGANSDGSHVTRPQATTMQRCMELALKDAGIQPNQVGYVNGHG
                     TATEQGDIAETQATTAVFGKIPLSSQKSYLGHTLGACGALESWFSIEMMRDGWFAPTL
                     NLENVDERCGDLDYLQGDGREIHTDYVMNNNFAFGGVNTSLIFKRWK"
     gene            9195..10100
                     /locus_tag="PXA71_000479"
                     /pseudo
     CDS             9195..10100
                     /locus_tag="PXA71_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251927.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dialkylresorcinol condensing enzyme"
     gene            10123..11265
                     /locus_tag="PXA71_000480"
     CDS             10123..11265
                     /locus_tag="PXA71_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HDL5104626.1"
                     /translation="MLSNVYITNTSAFLPNAPVSNDAMEAVLGMVGETPSRVRKMILR
                     SNGIQHRYYAIDPITRQATHSSTELAVQAVKKLGNSATSATCLAVGTSYPDQIMPGQG
                     VMVHGLLDAEPMEVLTTAGVCVAGMAAMKHAYNAVRIGEHRAAIATASETASAIMRSE
                     HFRAEIDHKKLDDARPEIGFEKDFLRWMLSDGAGAVLLANQPNEKGLSLKIHWIDLVS
                     YANEMPVCMYAGAEFIDGNYTGWKAMSEAQRAECSAMAVKQDVKLLNENIVKYTVEKA
                     LERIIPKYKLNAEEIDYFLPHYSSGSFRDKLLEGLQRINFLIPQEKWFTNLTTKGNTG
                     SASIYIMLDEFIRTHDLKQGQKILCYVPESGRFSSCFMLLEAVVNS"
     gene            11314..11529
                     /locus_tag="PXA71_000481"
     CDS             11314..11529
                     /locus_tag="PXA71_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDL5104627.1"
                     /translation="MDINDIPQDNSKIFNGERKVIYARNPQPEIRQMISSILACYAWD
                     ENNPFVAKSDARLKALAEVVGKAEIGD"
     gene            11810..12301
                     /gene="rplJ"
                     /locus_tag="PXA71_000482"
     CDS             11810..12301
                     /gene="rplJ"
                     /locus_tag="PXA71_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDL5104628.1"
                     /translation="MALNLQDKQAIVAEVNEAAKGALSAVVADSRGVTVEKMTELRKA
                     AREAGVTMQVVRNTLLRRAVEGTEFECLTDTFTGPTLIAFSNEHPGAAARLFTEFAKT
                     NKEFELKGAAFEGKKQDVAFLATLPTYEEAIARLMGTMKEAAAGKLVRTLAALRDQME
                     AAA"
     gene            12360..12728
                     /gene="rplL"
                     /locus_tag="PXA71_000483"
     CDS             12360..12728
                     /gene="rplL"
                     /locus_tag="PXA71_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDL5104629.1"
                     /translation="MSLTNEQIIEAIASKSVSEIVELITAMEEKFGVSAAAAVAAAPA
                     AGAAAAEEKTEFDVVLAEAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISK
                     AEAEALKKELEEAGAKVEIK"
     gene            complement(12835..13665)
                     /locus_tag="PXA71_000484"
     CDS             complement(12835..13665)
                     /locus_tag="PXA71_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL5104630.1"
                     /translation="MVQKPLNHYLEMQEHFLYVPYLHHHRRIRVLLPKDYHNEGWERY
                     PVLYMHDGQNVFYSKESYSGHSWKIIPTIKSHQELPKMIIVGIDNAGANRLNEYGPWK
                     TTTGSTPETRNAGGLGEEYAKWVVETVKPFIDIHYRTKPQQEHTLLAGSSMGGIITAY
                     MGSRYPHIFGHLGVFSLASWFSEPDFLRFTHQYPLQPNTKVFIQVGTNEGDEIDSHFI
                     SNTNQTYIDCSLNYYQALIRIGVPLDNIRLRIMANEIHHEMHWADHFVEFLHFSLLRK
                     "
     gene            13891..15432
                     /locus_tag="PXA71_000485"
     CDS             13891..15432
                     /locus_tag="PXA71_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HDL5104631.1"
                     /translation="MQASLQDILEVVKAKNLTYQQKLMSLGNIAERLFNPIELLGYTE
                     EEWEHIENQMICDLNEGYAIYRPRYILPDYNVYMQKGCQFLDLPPPTNLDEALDGLLI
                     LYSHVPSITTFPVYIGRLDQLLEPFITDEEQDYIKIKRFLNHIDKTISDSFCHANIGP
                     NDTKAGRLILKAVIELENITPNMTIRYDKTKTSREFAELAAKACLLVSKPSFANDAYY
                     IQDLGEEYGIASCYNALPECGGAYTLTRLRLGTIGRACASVEQMVNEMLPKVAKLALS
                     TMDKRHKFLVEESNFFESSFLVQEGFIKRTNFTSMIAIVGLADAVNHLLKQEGLNETF
                     GQSKRGDEIATLIMDKLQAVNDAHKGLYVERTNNQYLLHAQVGANNHAEDKMNTPAHR
                     IRVGEEPTLLAHLKQSAPFHKYFPSGTGDLFAFDQTYTDHLDAVVDIIDGSFAQGYRY
                     ITTYLKNTDLIRVTGYLVKKSEVERYRKGEAVLRDTTWYGSGTDDCAKVFDRQLRDEE
                     NVNAG"
     gene            15435..16223
                     /locus_tag="PXA71_000486"
     CDS             15435..16223
                     /locus_tag="PXA71_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HDL5104632.1"
                     /translation="MAALSEIFVPLHRIIPFSNVEGQGNRTSIFLQGCKLNCLYCHNP
                     ETIPRYSKEAKQVSLQYLYDQVMEAVPFIRGVTISGGEPTIHHKKLVPLFEALREQGL
                     TCYLDSSGFFDFEATEPLINVTDKFLFDLKGDGAGLQTLCFDRKNQAGKVPEQALPNV
                     NHIKPENLARNLQNLAKLLPLDKVEEVRLVYLNEFYNAHHLLEKVADLLKPYPDVLLK
                     IIRVHTKGARDETGLARFVPTIEQTDELAAFAKRHGIQKVITIY"
     gene            16236..17493
                     /locus_tag="PXA71_000487"
                     /pseudo
     CDS             16236..17493
                     /locus_tag="PXA71_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005760733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
     gene            complement(17572..19581)
                     /locus_tag="PXA71_000488"
     CDS             complement(17572..19581)
                     /locus_tag="PXA71_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5104633.1"
                     /translation="MSAENMPSVIRFEQAVAKKDYESACTELLSILSKLDSNFGGISN
                     IELNMPEQIENLENDKAIYFCTRMAVAITRLFEDPALEISEHGAMRFLTLQRWIALIF
                     ASSPYVNADHILRTYNRNKESANPNTVDLDATLQALIKFCILYLPESNILLNLDAAWN
                     ASSDLTASLCFALQSPRFIGTSSAFAKRAAILQWFPEKLAQIENLNKLPSAISHDVYM
                     HCSYDIEANKHNVKRSLNAVIRRHLLSVGWEDRKIEQLGTRNNKPVMVVLLEHFHSSH
                     SIYRTHSTSMVAAREHFHLIGLGSDAVDEMGQQVFDEFHLLPQDGSLFDRLSFLKDIC
                     DKNNPAVFYMPSIGMDLTTIFASNTRLAPIQAVALGHPATTHSDFIEYVIVEDDYVGS
                     ESCFSEQLLRLPKDALPYVPSALAPQNVVYNLRENPEVIHIGIASTTMKLNPYFLEAL
                     KAIRDRAKVKTHFHFALGQSSGITHPYVERFIKSYLGNDATAHPHSPYDEYLNILHNC
                     DMMLNPFPFGNTNGIIDMVTLGLVGVCKTGPEVHEHIDEGLFKRLGLPNWLITQTAEE
                     YVTQAIRLAENHEERLAIRRDIIENNKLQTLFSGDPRPMGQIFLAKVQAWLADKNSKN
                     AEVEVKTKKVRKAATASQSAKKQTTSKTQTAKAEKDNTAKTETKS"
     gene            complement(19591..20928)
                     /gene="rimO"
                     /locus_tag="PXA71_000489"
     CDS             complement(19591..20928)
                     /gene="rimO"
                     /locus_tag="PXA71_000489"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HDL5104634.1"
                     /translation="MSASPNIGFISLGCPKNLVDSERILTELRADGYNIIPSYENADL
                     VIVNTCGFIDSAVQESLESIGEALEANGKVIVTGCLGAKENQIREVHPKVLEITGPHS
                     YEAVMNHVHKYVPKPEFNPYTSLVPKQGIKLTPKHYAYLKISEGCDHRCTFCIIPSMR
                     GDLASRSIVQVLDEAKRLVDAGVKELLIVSQDTSAYSLDRKKEEATKTVFWNGMPIKS
                     NLITLCEQLGSMGVWVRLHYVYPYPHVDDLIPLMAAGKILPYLDIPLQHASPKILKAM
                     KRPGSIERTLERIKKWREICPELTLRSTFIVGFPGETEEDFQLLLDFLKEAQLDRVGC
                     FKFSPVEGAVATDMPDQVPEEVKEERFHRFMQLQQEISAARLQAKIGKTVQVIIDDID
                     EEGIIGRSMADAPEIDGVVYVDNPSNQLVTVGQIISVTITHADEYDLWGILNN"
     gene            complement(21083..21775)
                     /gene="mtnN"
                     /locus_tag="PXA71_000490"
     CDS             complement(21083..21775)
                     /gene="mtnN"
                     /locus_tag="PXA71_000490"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HDL5104635.1"
                     /translation="MKIGIIGAMAQEIEILRQVMVEPKVTELAGCKIFEGKINNTRVA
                     LLQSGIGKVAAAIGTTLLIQLTQPDMIINTGSAGGLDPDLNVGDILISTEVRYHDVDV
                     TAFGYEIGQLPANPPTFSPNEQLVELAQKEAKKAGYNVVSGLICSGDAFINGNDKINQ
                     IRQNFPNVVAVEMEAAAIAQVCHGFNLPFVIVRAVSDVADKESHLSFEEFLPLAAEKS
                     STIVLAMLNNID"
     gene            complement(21833..22054)
                     /locus_tag="PXA71_000491"
     CDS             complement(21833..22054)
                     /locus_tag="PXA71_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SlyX family protein"
                     /protein_id="HDL5104636.1"
                     /translation="MDNNYTLSAKITELETKVAFQELIIEELNQALIEQQFAIDKLQT
                     QIRHIAEKLKGAQLSQVASQAEETPPPHY"
     gene            22142..22867
                     /gene="fkpA"
                     /locus_tag="PXA71_000492"
     CDS             22142..22867
                     /gene="fkpA"
                     /locus_tag="PXA71_000492"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5104637.1"
                     /translation="MLKTKLSLFTLIVGTLFSTNVMAEEKADPKFVDDSSYAVGVLMG
                     KNINGVIESQKDIFTYNQDKILAGVQDTLKKTGKLTDEDLQKQLKSLDAYLSAKEAKI
                     NEEKTKATVAAGDKFRADYKKQSGVKETASGLLYKIEKAGEGNSPKAEDTVKVHYKGT
                     LTDGTVFDSSYDRGEPIEFQLNQLIPGWIEAIPMLKKGGKMEIVVPPALAYGDRAAGK
                     IPANSTLKFEIELLDFKAADAKK"
     gene            22964..23620
                     /locus_tag="PXA71_000493"
     CDS             22964..23620
                     /locus_tag="PXA71_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5104638.1"
                     /translation="MTKKFTPFSDEDHAILASYFPMVDGIAALIGEHCEIVLHSLEFL
                     EHSAIYIANGHNTNRKIGSPITDRALKSLHHMATDSVSKPYFTKAKGGVLMKSITIAI
                     RNGKQHVIGLLCININLEVPTSQFLNSFIAPVDTASEVTFASSVEDLVSQTIQTTIDD
                     VMADRQISNNNKNRQIVISLFEKGIFDIKDSINQVAEKLDISRHTVYLYIRQIKQDND
                     "
     gene            23620..23997
                     /gene="tusD"
                     /locus_tag="PXA71_000494"
     CDS             23620..23997
                     /gene="tusD"
                     /locus_tag="PXA71_000494"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HDL5104639.1"
                     /translation="MDYVLAIKSPVYGSQGAFLAYQVAEELLKANHTICQIFFFQEGV
                     SNANALVNPASDEVNLVEMWKKLAKLHRLPLHLCIAAAQRRGVVDEQISANATHNLAE
                     GFTLAGLGEFSQAVLKADRLLTF"
     gene            23999..24370
                     /gene="tusC"
                     /locus_tag="PXA71_000495"
     CDS             23999..24370
                     /gene="tusC"
                     /locus_tag="PXA71_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HDL5104640.1"
                     /translation="MKKYKLAFLFTQPPFGSAVSREGLDALLAASAFCDEQEIAILFI
                     NDGVFNLIADQQPEKLLQKDHISTFKLLELYDLTECFICQESVSLRGLDNADWLLRML
                     QFKTHAEMIALLNQAEKVMTF"
     gene            24380..24655
                     /gene="tusB"
                     /locus_tag="PXA71_000496"
     CDS             24380..24655
                     /gene="tusB"
                     /locus_tag="PXA71_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HDL5104641.1"
                     /translation="MLYTLSKANYDEETLNFFFSHLSENDAVVLWQDGVLQAVKSPQF
                     FAKLPRCYLLAQDVQARGLQEKLTAFQCISLSELVKLTAVYFPQVAL"
     gene            24771..25670
                     /locus_tag="PXA71_000497"
     CDS             24771..25670
                     /locus_tag="PXA71_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104642.1"
                     /translation="MVMAEENNTWVDKKHETVSTTLDRWANNINSWLGDADPDKPGTA
                     SLRVMLDSRWDKHDKFTYKPRVRGKIKLPILKKHLNVVFGDDELDNELTDKNHAGKLY
                     KNVNPNKRYNSREARDSNSSIGLRWSDGIKALGIETDLDAGIRSGSDIFGRLRISKDW
                     KITDQFSTRLEQIYRYGSESKHYLRTNFENKYTETDTTFIMNHTNFEYRHDVDEERSW
                     GNSLYRQHNFKPLTHISYGISMGGRLDKELSKFNYWGPFVSYRQPIWRNWLFIQPEIS
                     FYNDKDKDRKHFIQTFVRLEAIF"
     gene            26020..30045
                     /gene="rpoB"
                     /locus_tag="PXA71_000498"
     CDS             26020..30045
                     /gene="rpoB"
                     /locus_tag="PXA71_000498"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDL5104643.1"
                     /translation="MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSFEKFIEKDPE
                     GQQGLEAAFRSVFPIVSNNGATELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRL
                     VSYDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFARIDRRRKLPATIILRALGYTTE
                     EILNLFFEKIKFEIADNKLLMTLVPERLRGETASFDIAANGKVYVEMGRRITARHIRA
                     LEKDNVTQIEVPVEYIVGKVAAQDYVDLSSGEVICPANMEISMEMLANLSQAGYNQIE
                     VLFTNDLDHGPYISETLRVDPTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSA
                     ERYDLSAVGRMKFNRSLEIPEGVGSGILSNDDIIGVMKKLIEIRNGRGEVDDIDHLGN
                     RRIRSVGEMAENQFRIGLVRVERAVRERLSLGDLDGVTPQDLINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEG
                     PNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEEIEYLSAIEESNNIIAQANSNLD
                     ENFRFTDTYVTCRQQGESGLFKPEEVQYMDISTQQVVSVAAALIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMEKPIALDSGVAIVAKRGGTVQYVDASRIVVKVNEDE
                     TIPGEAGIDIYNLIKYTRSNQNTCINQVPCVNLGEPVARGEILADGPSTDLGELALGQ
                     NIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPN
                     VGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGTSGTVIDVQVFTRDGVEKDKRAKEIEEMQLCEAKKDLAEELEILEAGLF
                     TRVRNLLIEGGVKESALDGVAREKWLEQTLEDEAKQNQLEQLAEQHEELRKEFERKLE
                     IKRNKIIQGDDLAPGVLKVVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYD
                     ENGQPVEIVLNPLGVPSRMNIGQILETHLGLAAHGIGDQIDKMIKQQQEVAKLREYMQ
                     KAYDLGHGSQVVDLSTFSDEEVMRLAQNLRKGLPLATPVFDGAHESEIKGLLELGGLP
                     TSGQITLYDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA
                     QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHYMEPGIPE
                     SFNVITKEIRALAIDMELDEA"
     gene            30308..34591
                     /gene="rpoC"
                     /locus_tag="PXA71_000499"
     CDS             30308..34591
                     /gene="rpoC"
                     /locus_tag="PXA71_000499"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDL5104644.1"
                     /translation="MKDLVKFLKAQTKSNEDFDVIKIGLASPDKIRSWSFGEVKKPET
                     INYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRER
                     MGHIELACPVAHIWFLKSLPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQL
                     LTEEQFMDAEERWGDEFEAKMGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKI
                     TKRLKTLEAFLQSGNKPEWMVMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
                     NNRLKRLLDLVAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKG
                     KQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFRPFIYSKLENRGIA
                     STIKAAKKMVEREDPIVWDILAEVIREHPILLNRAPTLHRLGIQAFEPLLIEGKAIQL
                     HPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTNNVLSPASGDPIIVPSQDVV
                     LGLYYMTREKVNGKGEGMYFLDPREAEKAYRTGQAELHSRVKVRVTEYEKNEAGELEA
                     KTSLVDTTIGRSILWMIAPKGMPFSLFNQTLGKKAISKLINESYRRLGLKESVVLADQ
                     IMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEAEVAEIQEQFNGGLVTAGERYNK
                     VIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASFNSIFMMADSGARGSAAQIRQ
                     LAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLT
                     RRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRVLGRVVAEDVLKPGTDE
                     VLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCYGRDLARGHLINQGE
                     AVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIKLTNAKFVTNKEG
                     KIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVAVGEVVANWDPHTMPVIS
                     EVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALRLVDSNGKD
                     ILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLPRVADLF
                     EARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFEGEMV
                     QRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQMLR
                     KAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEA
                     GIAVVPEFEAPAAKANSFVTDADIEAEFEFVADDATQSLAALLNAGEEE"
BASE COUNT        10309 a         6913 c         7834 g         9697 t
ORIGIN      
        1 taaggattta gccctataat atggaacaat taggaaaata gtatggcaaa tggaacaagt
       61 agaaatcgaa gatcttcggg cagagtcact ttagctgatg tagccaaagt tgttggtgtt
      121 gggcagatga cggtatctcg tgctttgcgt acaccagaaa tggtgtcgga gccactacgt
      181 aaacggattg aagaggcaat cattgaacta ggatatattc cgcatttttc tgctcggcaa
      241 ttagcttctg cagaatcaca taatttggtc attgtgacga cgtcgattag ctcaacggaa
      301 aataccttaa ttttatcggc attacgcaaa agcgtggcgg attccgcatt gcaaatggtg
      361 attttgatcg ctgatcaaga atcttggttt caagaactga ttaatcatgc tcctcaagcg
      421 atagtgtttt tgaatttaga ttgccctcct aatgtccgtg agtggattaa aaacagcaat
      481 atccctaccg tagaaatagg tgcgataaaa aaagaaccga ttcatctcag tgttggaatt
      541 gatagccacg aagcaatgga gaaaatgatc cattttttgg tgaaaaaagg ctatcgagag
      601 attggattgt tatcggcgaa gcaagattta tccatcttca aacaatattt agaaagttgg
      661 catacgactt tatttgcaca tcatatttct cctttaaaaa tccaccacgt agtagaggat
      721 atttcgtttt cggcaggagc aactttgttg actgaagccc ttctaaattg ggaagcaata
      781 gatgcattgg tttttttatc cgatgaattg gcttgcggag cattatatga agcattacgc
      841 cgacatatga gcattccaaa agatcttgcg attgccggtt taggtggttt agaagtgggg
      901 agtatttcct accctaaatt gacaaccatt gcgatccctt acgagcaaat gggaaaaata
      961 gcaggtaaac aactacttac tcttttgagt ggtaaaacct tatcagcaga agagatgatt
     1021 gttaaattac cgactaagct agtgattcgt gatagcgccg cataatattg attttgcata
     1081 aaaatctata aaagatcgtg gcaagtcttg tagaaaatga tagaatttaa cgctttaaaa
     1141 taatttctga tttttttatt cattttttag gttatatatg gctactgaga ttaaaacaaa
     1201 aacccccgag caagtcgaac aaaaaggggg gaaaagcaaa ggtgcaaata cagcattatg
     1261 gctggttgcg attgtatttt tagcagttgc tgcggtaggt aatgcctatt tttcatctca
     1321 tttttcatta attgttcgag tgcttttatt ggtggtgttg ctagttggtg ctgttgcact
     1381 agcggcaatt acaaatcagg ggcaaaaggc aattcatttt attaaagagt ctcgaaccga
     1441 actacgcaaa attatctggc cgacacgccc tgaagcaaca caaaccacct tgattgtatt
     1501 ggcaatgtgc gtagtagttt ccttggtttt atggggtatt gactcaatca tcgtcgcatt
     1561 aattacattt gtaacaagtt taaggttcta aaatgagtga agtagaagtg aaagaaaatg
     1621 gctcaaaacg ctggtatgta ttacaagcgt tttcaggctt tgaaaaccgt gtggcagtaa
     1681 cattgcgtga atacattaag cttcacaaaa tggaagagca gtttggtgaa gtattagtgc
     1741 caaccgaaga agtcgttgaa aatgtgggcg gtaaacgccg taaaaccgag cgtaaattct
     1801 tcccaggtta tgtattggtt gaaatggaaa tgaatgacga tacttggcat ttagtgaaaa
     1861 gtgtgcctcg tgtaatgggc tttattggtg gtacggcaga tcgccccgca ccaattacca
     1921 aacgtgaagc agaccgcatt ctaaaccgtg tacaagaaac agcggaaaaa ccacgccaca
     1981 gaaaagaatt ccaaccgggc gaaagcattt tggttacaga aggtccgttt gcagatttct
     2041 ccggtacggt cgaagaagtg gattacgaaa aaggtcgctt aaaagtatcg gtgtcgattt
     2101 ttggtcgtgc gacaccggta gaattagaat tcagtcaagt ggaaaagcag agctaatttc
     2161 aattaatttc acacacaagc ggttattttt ctcaattttt tgcaaaattc agcggaaaaa
     2221 agaccgcttg taacaagatt tattcaacaa agcgaaagtt ttgcttgaaa aatagtcgca
     2281 aattctttaa aatttgcgac ctattacgag ccagcctgct gactcgtatt ttttatgtaa
     2341 caggggagct gattttcagc gttatcaccc atttagagga aaattaaaat ggcaaaaaaa
     2401 gtccaagcct acgttaaact gcaagttgca gcgggtatgg ctaacccatc accaccggtt
     2461 ggtcctgcat taggtcaaca aggtgttaac attatggaat tctgtaaagc attcaacgct
     2521 cgtactgaga gcttagagaa aggtttaccg attccggttg ttatcacagt ttacgctgat
     2581 aaatctttca cattcgttac caaaactcca ccggcggcag tgctactgaa aaaagcggta
     2641 ggtatcaaat ctggttctgg taaaccgaac aaagataaag tgggtacagt aactcaagag
     2701 caaatccgtc aaatcgctga aactaaagca gcagatatga ctggtgcgac tatcgaaacc
     2761 aaaatgaaat caatcgctgg tacagctcgc tcaatgggct taatcgtaga ggaataatac
     2821 aatggctaaa ttgactaaaa aaatgaaagc aattaaagct ggcgtagatt ctactaaagc
     2881 ttatgacatc aacgaagcag ttgaagtgtt aaaaaaattc gcaaccgcta aattcgttga
     2941 gagcgtggac gttgctgtaa acttaggtat cgattctcgt aaatcagacc aaaacgtgcg
     3001 tggtgcaacc gtattaccac acggtacagg ccgtaccgct cgtgttgctg tgtttacaca
     3061 aggtgcaaac gcagaagcag caaaagcagc gggtgctgac ttagtgggta tggaagatct
     3121 tgcagagcaa atcaagaaag gcgaaatgaa ctttgatgtt gttatcgctt ctccagatgc
     3181 aatgcgtgtt gtaggtcaat taggtcaagt attaggtcca cgcggcttaa tgccaaaccc
     3241 gaaagtaggt acagtaacac caaacgttgc agaagcggtt aaaaatgcga aatctggtca
     3301 gatccgctac cgtaacgaca aaaacggtat tatccacact actatcggta aagcagactt
     3361 ctcagctgaa caattaaaag ataacttaaa cgcattgtta gctgctttaa caaaagcaaa
     3421 accaacaaca gcaaaaggta tcttcatcaa gaaagtaagc atctctacta caatgggtgc
     3481 tggtgttgcg gttgatcaag catcacttta atttttaata gaatcaaaag accgtagtgt
     3541 taatactcta cggtcttttt ctttaggtac gaatgttaag attattatct ttttgcttta
     3601 tttttttgct tagtgcttgt actgtattac ctcaaattaa gcaattaccg ccacaggttg
     3661 aatctgtaaa atcctttaaa gttgaaaata atggccagca aagtttgctt ctaattcaat
     3721 tttatgaaaa taaatggcgt tggattcaaa ctgatccttt aggtgctcct attgccagag
     3781 tatggcttac taaaaaaggt tgggagccag atggctttgt aatgccaaat aagcaggcac
     3841 agctattatt tacagcttta gtcaatgcat taaaccctca ttctccacct ttttatttag
     3901 ataaaggttg gaaaattgag agggaaaaat cccaatttac gatttggcta ccagatagca
     3961 gtaaatggaa agtggaaata ttgggggaat aagcgaaaac ttgaacctct atgcttgaat
     4021 cacttgaata tgaattttat aattttagtg ccattacaca ataatactgg aataaataat
     4081 aatgacacta tatttatcag agcccgccat caccagtccg attggatatg gcatcgtgga
     4141 gcatttgaat gttttaatta atgcgaaagt atctccttta gatacgactt cacagcctta
     4201 tttacgacat aatatttcaa atagttcacc gaaatttcta gggcaagtct ctgctagatt
     4261 gcgtgatttt cctgttgaac tatctattga acaccgcagc cgcaataacc aactgctatg
     4321 gcacgccctt gcagaaattg agccgaaaat taccgcttgt atcgagcaat tcgggcgtga
     4381 gcggattgcg gtgatcatcg gcacgtccac taccggcgcc gatgaaaata ttcccgtctt
     4441 caaagccggt gtgcagggcg attatgccac cgagcagttt aatcaacagc aaattctctt
     4501 ctctgcgccg tctgatttcg ttgccgaagt gtatggctta acggggctga gttacggcat
     4561 ttccaccgcc tgcacctcag aggcaagagc gttaatttct gctgcccgtt tactgaaagc
     4621 cggcttgtgc gatgcggtga tttgcggtgg tgtggatacc ctttcgcctt taactatcag
     4681 cggatttagc tcgctggaag tgttatcaaa ccaacaaacc aacccatttt ccgctaaccg
     4741 taacggcatt aacatcggcg aaggcgcagc ggtgtttgtg atgagccgtg aaccactgga
     4801 cgaacatcgc attcagttac tgggttatgg ttccagctcg gacgcttacc atatgtcctc
     4861 acctcacccc gaaggggaag gggcaatttc cgctttccaa aatgccctgc acaatgctga
     4921 tttagacgca gccgacatcg gctggatcaa cctgcacggc acagggacgc ttcataacga
     4981 tcaaatggaa agcctcgctg tggcaaaaat cttcggtaat cagaccgctt gcaccaccac
     5041 caaaccctac accgggcata cccttgggct gccggtgcgg tggaagcggc aattttgtgg
     5101 ggaatgctct gtcgccaaca caacccgacc ggcaagctcc ctgcgcaatt atgggataaa
     5161 caagcggacg aaaacctgcc gaacattgcg atcaccgatg aacagagccg ttgggcagca
     5221 ggcagacgga ttggcgcaag cagctctttt gcctttggcg gcaataacag cgtactgatt
     5281 ttgggagaaa gcgatgcata aattcacctt ccctatcgaa caaattgcac cattggttcc
     5341 tcacagtggc aatatgatcc tactcgaccg cattaccgca ttcggcgagg attttttgac
     5401 cgctgaaacc aatattcgcc ctgacaatcc gctgatcaaa cacggaaaac ttgccaccta
     5461 cgccagcatt gaaattatgg cacaagccgg cgaaccagtt cgcttaggct acctgctcgg
     5521 cactcgcaaa ctgcacctcc accgccaaga aatcccgatt ggctcacagc tacaaattca
     5581 gatcaaaatg tctattcaag atgccaccgg cttcggcgta ttcgactgcc aactgatcga
     5641 tttagccgac aaccaagtgc ttttagaagg ggcgctgaat gtgtttagtc cgaaatagag
     5701 ttggtagtag taagtagtag taagtagtag taagtagtag taagtagtag ttggtagtag
     5761 ttggtagtag ttggtagtag ttggtaggaa attcgttatg caagaggcct atgacattca
     5821 acatctttgt actcgcaaag aagataaatc ctttgatcgc aaaagtgcga gaaaagaacc
     5881 gaaagagatt ttgcggcatt tgattggttt tgcgaatgca gacggcggtt tattagttat
     5941 tggtattgaa gataatggcg aaattaccgg ttttaactac caaaaagccc atcagccgga
     6001 agaatttatc cacgctctgc acaatttaca aaaaatgccg ataccggtga cctatcagca
     6061 aattgaggtg gtaaatagtc gaggtttagc ggattttgtc ttattatttg aagttacagc
     6121 ttcgagtggg agggtgatta cctctcacga tgatcgggtt tttctacgct caaaagatca
     6181 aactttggaa ctcaattttg aacaacgttt gcaattagag tacgaaaaag ggcagcgtgc
     6241 ttttgaagag caaccgatag cacgcgctga ttttactgat ctggatatgg atttattaga
     6301 acagtatcga cagaaattac acacagatcg ctcaatagaa gagattctga aagcccgaga
     6361 tttaattaac aaagaagggc aaattacgaa tgcctgtatt ttgctatttg ggaataaccc
     6421 gacacgttat tttcctaatg cccgtttgcg ttttttgcgg tatgaaggta aagcacctct
     6481 gaccggtaga acttttaatg tcgtcaaaga atttatgctt gaagagccta ttcctaagtt
     6541 attggagagt gctaaggcag tattaaaaag ccaattacga gagttccaac gtttagatga
     6601 aaacgggcaa ttcacaaaaa ttgatgagta tccagaattt gcttggttag aaggtattgt
     6661 caatgcgatt gcacaccgta gttacagtaa tcaaggggac tgcattcgca tttcgatgtt
     6721 tgatgaccgt ttggaaattt ttagtccggg tggattacct cgccctgtga cgcttgaaaa
     6781 tatgtactat acccgttttt cacgcaatcc gaagattgca cgagtgctgt atgaatttgg
     6841 ttgggtcaaa gagctgaatg aaggtgttaa tcgtatggcg gaggaaatga acgcttacca
     6901 acttaataca ccttcttact ttgaacccaa tgaaaatgcg gtcagactga ttttagaaaa
     6961 taatattgaa catcggacat taagggcatt agaacgaata gaagaaattt ttacgcagga
     7021 tattatggcg acattaaata aaaatgaagt tactatcctg caatatttat atgaaaatga
     7081 aatgattact gtaaagattg ctagtgagat attagatcgg agtaaagaat tatctcgtag
     7141 aatattaaaa agtttagaac aaaaaaatat tctcacttgg cacggcttaa gtccaaaaga
     7201 tccaacccaa tactacacac tcaagaaata gtaggaaata taagatgaat aatacagttc
     7261 tcatcaccgg ctcaagccgt ggtatcggta aagcgattgc tttaaccctt gcacaacaag
     7321 ggtttgatat tgtggtacat tgccgttctc gtgtggaaga agcggaagcg gtggcacaag
     7381 cggtcagaaa tctcggaaaa aatgccagag tgttacagtt tgatgtggcg gatcgtgaaa
     7441 aagtgcggtc gattttagag gcagatgtgg aacaacatgg tgcctattac ggcgtggtgc
     7501 taaatgcagg gcttacccgt gataacgcct ttcctgcttt aaccgatgag gattgggata
     7561 gcgtgttgcg taccaattta gacggttttt ataatgtcct gcacccgatt atgatgccga
     7621 tgatccgtcg ccgtaaagca ggcaggattg tctgtatcac ctcggtttcc ggcttgatcg
     7681 gcaaccgtgg gcaggtcaat tacagcgctt caaaagccgg cattattggt gcggcaaaag
     7741 cactcgccat cgagcttgcc aaacgtaaaa tcacggtaaa ctgcgtggcg cccggcttga
     7801 ttgataccga tattctggac gaaaacgtcc caatcgaaga aattctcaaa atgatccccg
     7861 caggacgaat gggcgatcct gatgaagtgg cacacgccgt tgcgttttta atggatgaaa
     7921 aagccactta catcacacgc caagtcatcg ctgtgaatgg tgggttgtgt taactttagg
     7981 ataataattc gtaggggcgg atccagtacc cgcccgaagc caaaaagaga taaatatgaa
     8041 acgagtcgtc atcaccggaa ttggtgtggt taccgctttt ggtaaagagt gggcggaaat
     8101 tcacggctat caaccgccga aacattggaa ccgcaagcag ttgcgcagcc ttgggcgagt
     8161 gtcgcaattt gtggtggagg ccagcgagcg ggctttagca caggccggtt tgttggacga
     8221 aaacggcgtg attttcgact ggctaaaaga caggcgaatg ggcgtggcgt gtggctcgtc
     8281 cacaggctct accaatgaca tcaaagatgc cgccgaattg ctgatgaccg gcaaatcgga
     8341 cggtttcaat gccaacacct atgtgcgaat gatgccccac accaccgctg ccaatattgg
     8401 cattttcttc gggctgacag ggcggattat cccgacttcc agcgcttgct cctcgggcag
     8461 ccaaggtatc ggttacgctt acgaagccat taaatacggt atgatcccga tgatgcttgc
     8521 cggcggtgga gaagaatttt gtgcctccaa agtctatgtc ttcgacagcc tctatgctgc
     8581 cagccgccgc aacgacaacc caaaaggcac gccacgcccc tatgacaaag accgagacgg
     8641 cttagtgatc ggcgagggag cgggaatgtt cgtattggaa gagctggaac acgcgttagc
     8701 acgaggggca aacattatcg ccgaagtggt gggctacggt gcaaacagtg acggttccca
     8761 cgtcacccgc ccacaagcca ccacaatgca acgctgtatg gaacttgccc ttaaagatgc
     8821 cggtattcaa ccgaaccaag tcggctatgt aaacggacac ggcacggcca ccgagcaggg
     8881 cgacattgcc gaaactcaag ccaccacagc ggtgttcggc aaaattccgc tcagctcgca
     8941 aaaaagctac ttagggcata cgctcggtgc gtgtggtgca ttggaaagct ggttcagcat
     9001 tgaaatgatg cgagacggct ggttcgcccc aacactgaat ttagaaaatg tcgatgaacg
     9061 ctgtggcgac ttggattacc ttcaaggtga cggacgggaa atccacaccg attatgtgat
     9121 gaacaacaat ttcgccttcg gcggtgtgaa tacctcattg atttttaaac gttggaaata
     9181 accgttttca aataatgaaa aagatattat tagtttatta ctcccaaacc gggcaactca
     9241 cccatttggc agaaaatttt gtacaatcgc ttgaacaagc gggcgttttt gtggaaaaac
     9301 tcgcaatcaa accgcaacag gaatacccgt ttccgtggcg gtttatgcgt ttttttaaca
     9361 ccttccccga aaccgtccac ctcacaccgc cgccgattga gcctctgccc tttcagcacg
     9421 aaatatacga tttggtgatc atcgcctatt ccgtgtggtt tctctccccc agccagccga
     9481 ttaccgcttt tttacagagt gaacaggcaa aaaagtgttg aaggatacgc ccgtcatcac
     9541 gctgatcggc tgtcgcaata tgtggctgat ggcgcaggaa aaagtgaaaa aactgcttgc
     9601 cgagagtgag gcgaagctca ttggcaacgt ggtcaaagtg gatcaatcta acgactgggc
     9661 gagttttatc accacaccgc tttggatgct gaccggcaag aaaaaaaatc ggcaagctgc
     9721 cgagcgctgg cattgccgaa agcgaaatgg aagatgtaaa acgcttcggg gcaaaacttt
     9781 tgcacatttt tagccaaaac caaccgcttg acagcaccct tttccgccaa atgcaagcgg
     9841 tcaaaattga cgaaaaattg atgatgagcg aaaaagtcgg tgcgagaagt ttccaccttt
     9901 ggggcaaatt actgatcaag tgcggtcaaa tttcaccgca cttacgccaa gcggtactct
     9961 atttttacat cctcttttta gtgacgttaa ttttaaccgt cgtcccgatt tcaacggtga
    10021 ttaaacggct attacgccca ctgctgaaag aaaaattaga aaaacaaaaa cggtattttg
    10081 ccgagccttc gggcgagtaa acgtacccta cacggaaact ttatgctatc taacgtctat
    10141 atcaccaaca cctccgcctt tttacccaac gcccctgtgt ccaacgatgc aatggaagcg
    10201 gtgttgggaa tggtggggga aacgccttcc cgagtgcgga agatgatttt gcgttctaac
    10261 ggtattcaac atcgttatta tgccattgac ccgataaccc gccaagcgac tcacagcagt
    10321 accgagttgg cggtgcaagc ggtcaaaaaa ttgggaaatt ctgcaacatc agcgacttgc
    10381 ttggcggtgg ggacatctta ccccgaccaa attatgccgg ggcagggggt gatggtacac
    10441 ggcttgcttg atgccgaacc gatggaagtg ctgaccactg ccggtgtgtg cgtggcggga
    10501 atggcagcga tgaagcacgc ctataatgcc gtacgcatcg gtgagcatcg tgctgcgatt
    10561 gcaacggctt ccgaaaccgc ctccgccatt atgcgcagtg aacatttccg tgccgaaatc
    10621 gatcataaaa aactggacga tgctcgccct gagatcggtt ttgagaaaga tttcctgcgt
    10681 tggatgctct cagacggtgc aggggcggta ttgcttgcca atcagccgaa cgaaaaaggg
    10741 ttgagcctca aaattcactg gatcgatctg gtctcttacg ctaacgaaat gccggtttgt
    10801 atgtacgccg gtgcggaatt tattgacggc aactacaccg gctggaaagc aatgagcgaa
    10861 gcccaacgtg ccgaatgctc ggcaatggcg gtgaaacaag atgtcaaact gctcaacgaa
    10921 aacatcgtca aatacacggt ggaaaaagca ttggagcgga ttatcccgaa atacaagctc
    10981 aacgctgaag agattgacta cttcctgccg cactactcgt ccggttcctt ccgagataaa
    11041 ttattggaag gtttacagcg gatcaatttc ctgatcccac aggaaaaatg gttcaccaac
    11101 ctgactacca aaggcaacac tgggtcagcc tcgatctaca ttatgctcga tgaatttatc
    11161 cgcacccacg atctcaaaca gggacaaaaa atcctctgct atgtgccgga aagcggacgt
    11221 ttttcgtctt gttttatgct tttggaagcg gtggtaaatt cgtaaaatcg tagggacggg
    11281 ggctattccc gtccaacaat catcggaaaa cgtatggaca tcaatgacat tccccaagac
    11341 aacagcaaaa tcttcaacgg cgaacgcaaa gtgatctacg cccgcaatcc gcaaccagaa
    11401 atccgccaaa tgatctcctc tattctcgct tgctacgctt gggacgaaaa caacccgttt
    11461 gtagcgaagt ctgatgcacg gttgaaggca ttggcggaag ttgttggtaa agcagaaatt
    11521 ggcgattaag tttgattttg tgctttacag ggtcgcagat tatctgtata atttgcgacc
    11581 ttaacttgcg agagcaagct gatggtgctt agcctatcta agccccgtct aagactgtag
    11641 gggtgaaaac ttaataatcc tacatagatg gtgaacagac agaattctct gcttctggac
    11701 accttaggct caaagaagat tgcagtttgt agcaatgcaa gcggtaatat ttttgggatt
    11761 ttttgtaaat tctgcttgaa aaggcagagt gtatcaggag ctaaaaccaa tggcattaaa
    11821 tcttcaagac aaacaagcga ttgttgctga agtaaacgaa gctgccaaag gtgcactttc
    11881 agctgttgtt gcggattctc gcggtgtaac agttgaaaaa atgactgagt tacgtaaagc
    11941 agctcgtgaa gctggtgtga caatgcaagt tgtacgtaat actttattac gtcgtgcagt
    12001 ggaaggcacc gagttcgagt gcttaacaga tacgtttacc ggtccaactc ttatcgcatt
    12061 ctcaaatgaa cacccaggtg cagcagcacg tttattcact gaatttgcga aaacaaacaa
    12121 agagtttgaa cttaaaggtg cagcctttga aggtaaaaaa caagatgttg cattcttagc
    12181 aaccttacca acttacgaag aagcaattgc acgtttaatg ggcacaatga aagaagctgc
    12241 ggcaggcaaa cttgttcgca ctcttgcagc attacgcgat caaatggaag cagcagctta
    12301 attttaagca ctcttcttta ttcgtttaac aacttatttt actttaggaa tcgattgtta
    12361 tgtcattaac taacgaacaa atcattgaag cgattgcttc taaatcagta tcagaaatcg
    12421 ttgaattaat cactgcgatg gaagaaaaat tcggtgtttc agcagcggca gcagtagcag
    12481 cagctccagc agcaggcgca gcggcagcag aagagaaaac tgagtttgat gtagtattag
    12541 cagaagctgg tgcaaacaaa gttgctgtaa tcaaagcagt acgtggtgca acaggtttag
    12601 gcttaaaaga agctaaagac ttagtagaat cagctccagc tgcattaaaa gaaggcatct
    12661 ctaaagcaga agctgaagca cttaagaaag aattagaaga agctggcgcg aaagtagaaa
    12721 tcaaataatt tttgatttat tttgtcagaa cttcaagttc aacaaacccc gatggaaaca
    12781 tcggggtttt gttttttcag aattgtgtaa tgtagatatg attaccttta tccattactt
    12841 gcgcagcagt gaaaaatgta aaaattccac aaagtgatct gcccagtgca tttcgtggtg
    12901 gatttcattt gccataatcc gcaggcggat attgtctaac ggcacgccaa tccgaatcag
    12961 tgcttggtag taattgagcg aacaatcaat ataggtttgg ttcgtattag agataaagtg
    13021 cgaatcgatt tcatcgcctt cgttagtgcc aacctgaata aacactttgg tattgggttg
    13081 taacggatat tggtgcgtaa aacgcagaaa atccggctca ctaaaccaag aggcaagcga
    13141 aaacacccct aaatgcccga aaatatgtgg gtagcggctg cccatataag cggtgataat
    13201 gccacccatt gaactgcctg ccaataaggt atgttcttgc tgaggcttgg tgcgatagtg
    13261 aatatcaata aagggtttaa ccgtttccac cacccatttg gcatattcct cccctaagcc
    13321 tccggcattt cgggtttcag gggttgagcc ggtggttgtt ttccacgggc cgtattcatt
    13381 taagcgatta gctcctgcgt tatcaatgcc gacaataatc atcttcggta attcttggtg
    13441 tgatttaatg gttggaataa ttttccaaga atgccccgaa taagactctt tgctgtaaaa
    13501 cacattttgc ccgtcgtgca tatataacac cggataacgt tcccaacctt cgttgtgata
    13561 atccttcggc aatagtaccc gaatgcggcg gtgatggtgt aaatagggaa catataaaaa
    13621 atgctcctgc atttctaaat agtggttaag tggtttttgt accatcagtc tgtccttttg
    13681 cttaaattgt ggcgtatttt acaccttaat cagtctgagt taaaacaagc ggtcagaaaa
    13741 agtcaaaaat ttgcaaattg ctgttaccta acgcaatcgg ttgccttatg cttttgagga
    13801 atataaaaga gaaactgtga tctaagtcac agcaattttt attcggtttg actaaaatcc
    13861 gaactatcac ttaatagaga ggaaaatgtt atgcaggctt cattacaaga tattcttgag
    13921 gtagtaaaag caaaaaatct cacttatcag caaaaattga tgagtttagg caatattgct
    13981 gagcggttat ttaacccgat tgaactactt ggctacactg aagaagagtg ggaacacatt
    14041 gaaaatcaga tgatttgcga tttaaatgaa ggttatgcga tttatcgccc acgttatatt
    14101 ttgcctgatt ataatgtgta tatgcaaaaa ggttgccaat tcttagattt acctccgcca
    14161 accaatttag atgaagcctt agacggcttg ttaattctgt attcacacgt tccgtccatt
    14221 actacttttc cggtgtatat cgggcgttta gaccaactgt tagaaccgtt tataaccgat
    14281 gaagagcaag attacattaa aatcaagcgt ttcttaaatc atatcgataa aaccatttcc
    14341 gattctttct gccacgctaa catcgggccg aatgacacca aagccggtcg tttaatctta
    14401 aaagcggtga ttgagcttga aaacattaca ccgaatatga cgattcgtta tgataaaacc
    14461 aaaacatcgc gtgaatttgc cgaactggcg gcgaaagcgt gcttgttggt gtccaaaccg
    14521 tcttttgcta atgatgccta ctacattcaa gatttaggcg aagaatacgg aattgcaagc
    14581 tgttataacg ccttaccgga atgtggcggt gcttacactc tgacccgcct gcgtttaggt
    14641 actatcgggc gtgcttgtgc gagtgttgaa caaatggtca atgagatgct gccgaaagtg
    14701 gcaaaactcg ccctttccac gatggataaa cggcataaat tcttggtgga agaaagcaat
    14761 ttctttgaaa gtagcttctt ggttcaggag ggctttatca aacgtactaa cttcacaagt
    14821 atgattgcga ttgtaggtct tgctgatgcg gtgaatcatt tactcaagca agaaggttta
    14881 aatgaaacct ttgggcaaag caaacgtggc gatgaaattg cgacgctgat tatggataag
    14941 ctccaagcag taaatgacgc tcataaaggg ctgtatgttg aacgaaccaa taaccaatat
    15001 ctgttacacg ctcaagtggg ggcaaataac cacgctgaag acaaaatgaa cacgccggca
    15061 caccgcattc gtgtgggcga agagccaacc ttattggcac acttaaaaca gtctgctcct
    15121 ttccataaat atttcccatc cggtacgggg gatttattcg cctttgacca aacctacact
    15181 gatcatttag atgcggtggt ggatattatt gacggctcgt tcgcccaagg ttatcgctac
    15241 attaccactt acctgaaaaa tactgatttg attcgagtga caggctactt ggtgaaaaaa
    15301 agcgaggttg aacgttatcg caaaggcgaa gcggtattgc gtgataccac ttggtatggt
    15361 tcaggcaccg atgattgtgc gaaagtgttc gaccgccagc tgcgtgatga agaaaatgtg
    15421 aatgcagggt aacaatggct gcactttctg agatttttgt gccgttacac cgcattatcc
    15481 ccttctcgaa tgtagaaggg cagggcaatc gtaccagcat ttttctacaa ggttgcaagc
    15541 tgaattgcct gtattgccat aacccggaaa ccattccacg ttatagcaag gaagcaaaac
    15601 aggttagctt gcaatacttg tacgatcaag tgatggaggc agttcccttt attcgaggag
    15661 tcactatttc gggtggagag ccaaccattc atcataaaaa attagtgcca ctgttcgagg
    15721 cgttgcgtga gcaagggcta acctgttatt tagacagcag cggctttttt gattttgagg
    15781 caacagagcc gttaattaat gttaccgata aatttctgtt cgatctcaaa ggagatgggg
    15841 cgggcttaca aacgctatgc tttgatcgga aaaaccaagc cggcaaagtg cctgaacagg
    15901 ctcttccaaa cgtgaatcat attaaacctg aaaacttggc tcgcaatttg caaaatttag
    15961 ccaaattatt accgcttgat aaggtggaag aagtacgttt ggtttacctc aatgagtttt
    16021 ataacgccca ccatttgctc gaaaaagtgg ctgacctact taaaccttac ccagatgtac
    16081 tacttaaaat tattcgggta cacaccaaag gagcgagaga tgaaacaggc ttggctcgtt
    16141 ttgtacccac tatcgagcaa accgatgaac tggcagcatt tgcaaaacgg cacggtattc
    16201 aaaaagttat tactatttac taatggagac ttacgatgga tatactaatt agcataattg
    16261 gtgtttttgt gttattaggc ttaggtgttt tattatcaaa taatcgcaaa gccattaaat
    16321 ttcgcacaat tttgggcgct ttggcgattc aaattggttt tgccgctctt attctttact
    16381 ttccagcggg aagaaatgca ttgctagcta ctgcaaattg tgtgagcaat attattaatt
    16441 atggtaacga aggtattagc tttgtgtttg gcaatttagc gaatccgagt aatagcagca
    16501 ttggttttgt gtttgcggtt aaagtattgc ctattattat cttcttctct gcgttaattt
    16561 caatgcttta ctaccttggt gtgatgcaat gggtgattaa aattattggt ggagcattac
    16621 aaaaaacact aggcacttcc aaggcagaat caatgtcagc ggcagctaat tatttttgtt
    16681 ggtcagacag aagctcctct agttgtaaaa ccatacatta gccgtatgac agagtcagaa
    16741 ttatttgcca ttatggttgg tggaactgct tcaattgctg gttccgttat ggctggttat
    16801 gccggaatgg gcgttccttt aacttatctt attgcggcct cctttatggc tgcaccagct
    16861 gggttactat ttgctaaatt aatgtatcct caaacggaaa ccttggagag taaagcagat
    16921 gacaatgttg aagttgaaaa gccaaataac gtggttgagg ccctagctaa tggtgctagt
    16981 gcaggtgtta ctttggctat taatgtcggt gctatgttaa tagcatttat tgcagtgatc
    17041 gctttattaa atggctttat tggtggcatt ggtaattggt ttggttatga ggggctaacc
    17101 ttacaaattt tattaggtta tttattccaa ccacttgctt tcttaatcgg tgtgccgtgg
    17161 caagatgccg atattgcagg tcaaatgata ggtatgaaac ttgctgttaa tgaatttgtc
    17221 ggatatcttg agtttgctaa atatctacag cctgatgctg tggtgcaatt aagcgataaa
    17281 actaaggcaa taattacttt tgctttatgt ggttttgcaa actttagagc aattgcggta
    17341 ttgattagtg gtatcggaag tatggcacca agtcggcgtt cagatattgc tcgtttaggt
    17401 ttaaaagcag tgattggcgg cacattggcg aacttaatga gtgcaactat agcgggtttc
    17461 tttattggtt taagtggtgc cacattaggt tgatacaagc ggttaaattg actcactttt
    17521 ttgcaaaaag cccaagtaag ttaaatgact acttgggctt tgtttaatga actagctctt
    17581 agtttcggtt tttgctgtgt tatccttttc cgctttggct gtctgtgttt tcgaagttgt
    17641 ctgttttttt gcggattggc tagcagtagc tgcttttctt actttctttg ttttaacttc
    17701 tacttccgca tttttagagt ttttatccgc taaccatgcc tgcactttag ctaagaatat
    17761 ttgtcccatc gggcgaggat cgccagaaaa taatgtttgt aatttattat tttcaataat
    17821 gtcgcgtcta attgctaagc gttcttcgtg gttttccgct aaacgaatag cttgagtaac
    17881 gtattcctct gctgtttggg taattaacca attaggtagc ccgaggcgct taaataaacc
    17941 ttcatcaata tgttcatgaa cttcagggcc tgttttacag acaccaacta aaccaagcgt
    18001 aaccatatcg ataatgccgt ttgtatttcc aaatgggaat ggatttagca tcatatcgca
    18061 attatgtaga atatttagat attcatcata tggcgaatgt gggtgtgcgg ttgcatcatt
    18121 tcctaaatag cttttgataa aacgttccac ataaggatgc gtaattccac tagattgccc
    18181 taatgcaaaa tggaaatgag tttttacctt cgccctatca cgaatggctt ttaatgcctc
    18241 taagaaatat gggtttaatt tcatagtggt tgatgcaatt ccgatatgga taacctctgg
    18301 attttcacgt aggttataga ccacattttg aggcgctaat gcggaaggca catagggtag
    18361 cgcatctttt ggaagacgta ataattgttc actaaagcag ctttcggaac caacatagtc
    18421 atcttctacg atgacatatt caataaaatc agagtgtgta gttgccggat gacctagcgc
    18481 aacagcttga attggtgcta ggcgagtgtt actagcgaaa atagtggtta aatccattcc
    18541 aatgctaggc atatagaata cggctggatt atttttatca cagatatctt ttaaaaagct
    18601 taagcggtca aatagtgagc catcttgtgg taataaatga aattcgtcga atacctgttg
    18661 ccccatttca tctacagcat cactgcctag cccaataaga tggaaatgtt cgcgtgcagc
    18721 aaccattgag gttgaatgag tacgataaat agaatgtgat gaatggaaat gctccaataa
    18781 tactaccatg acaggtttat tatttctggt accaagctgt tcaatttttc tatcttccca
    18841 accgacagaa agtaaatgac gacgaattac agcatttaac gaccgtttta cattatgttt
    18901 atttgcttca atatcataac tgcaatgcat ataaacatcg tgtgaaatgg cgctcggtag
    18961 cttgttcaag ttttcaattt gcgctaattt ttctgggaac cattgcaaaa tagccgcgcg
    19021 ttttgcaaaa gcagaggatg taccaataaa tctaggtgat tggagtgcaa aacaaagtga
    19081 tgcggtgaga tctgatgaag cattccatgc agcatctaga ttcaataaaa tattagattc
    19141 cggtaagtat aaaatacaga acttaattag tgcttgtaat gtggcatcta aatcaaccgt
    19201 atttggatta gcagattctt tatttctatt gtaagtacgc aagatatggt ctgcgtttac
    19261 gtatggagaa ctggcaaaaa ttaatgctat ccagcgttgt aatgtcagaa aacgcatagc
    19321 accgtgttcg gagatctcta atgcaggatc ttcaaacaag cgagtaatcg ctaccgccat
    19381 tcgagtacag aaatagatag ctttatcatt ttctaaattt tcaatctgct ctggcatatt
    19441 caattcaata ttggaaatgc caccaaaatt actatctaat tttgaaagga tagacagtag
    19501 ctcggtacaa gccgattcat aatctttttt cgcgaccgcc tgctcaaaac ggatgacgct
    19561 aggcatattt tctgctgaca taatgtatcc ttagttgttt aaaattcccc acagatcata
    19621 ctcatctgca tgtgtaatgg ttactgaaat aatttgccct actgtcacta attggtttga
    19681 aggattatct acatagacta caccgtcaat ttccggtgca tctgccattg agcgaccgat
    19741 aatgccttct tcgtcaatgt catcaataat tacttgtacg gttttgccga tttttgcttg
    19801 taagcgagca gcggaaattt cttgttgtag ttgcataaaa cggtggaaac gttcctcttt
    19861 tacttcttcc ggaacttgat ccggcatatc ggtagcaaca gcaccttcca ctgggctgaa
    19921 tttaaagcaa ccaacacgat ctaattgtgc ttcttttaag aaatcgagta atagttggaa
    19981 atcttcttct gtttcccccg ggaagccgac aataaaggta gaacgcagag ttaattcagg
    20041 gcaaatttca cgccattttt taatgcgttc taaggttctt tcgattgaac ccgggcgttt
    20101 catcgctttt aagattttcg ggctggcgtg ttggagtgga atatccaaat acggcaaaat
    20161 tttgccggca gccataagcg gaattaaatc atctacgtgt gggtatgggt aaacatagtg
    20221 caaacgcacc cacacgccca ttgagcctaa ttgctcacat agcgtaatta aattactttt
    20281 aatcggcata ccgttccaga aaacggtttt ggttgcttct tcttttttgc gatctaacga
    20341 ataggctgag gtgtcttgtg agacgattaa cagctctttt accccggcat caactaggcg
    20401 ttttgcttca tctaatactt gcacgataga acggcttgct aaatcgccac gcattgaagg
    20461 aataatgcag aaagtgcagc gatgatcgca gccttcggaa attttcaaat aagcgtaatg
    20521 cttcggtgtt aatttaatcc cttgttttgg cactaagctg gtgtaagggt taaattccgg
    20581 ttttggcaca tatttatgga cgtggttcat taccgcctca tagctatgtg gccctgtaat
    20641 ttccaatact ttagggtgta cctcacgaat ttggttttct tttgccccta aacagccggt
    20701 gacaattact tttccgttag cttctaacgc ttcaccaatg ctttcaagag attcttgtac
    20761 tgcggaatca ataaaaccgc aggtgtttac aatcacaaga tccgcatttt cataactagg
    20821 gatgatgtta taaccatccg cacgcagttc ggtcaaaata cgttcggaat caactaaatt
    20881 tttagggcag cctaagctga taaaaccaat atttggtgaa gcactcatat aactctcaat
    20941 aactaaaaag aaaaatgcct acaatttttg tctgtaggca aaaaactaac aagattctac
    21001 aaaatcttgc ccaaaatagc gataacaagc ggtcaatttt taataaacat ttacaaactt
    21061 gaaatttcgc taacaattaa aattaatcga tattatttag cattgctaat acaatcgtgg
    21121 aagatttttc tgcggctaat ggcagaaatt cttcaaaaga aaggtgggat tctttgtccg
    21181 ctacatccga tactgctctt acgattacaa atggaaggtt aaaaccgtga caaacctgcg
    21241 caatggctgc tgcttccatt tcgactgcaa cgacattcgg gaaattctga cgaatttgat
    21301 taatcttatc attaccgtta ataaaggcat cgccgctaca gattaagcct gaaaccacat
    21361 tgtaaccggc ttttttcgct tccttttgag ctaattcgac taattgctcg tttggcgaaa
    21421 atgttggcgg gtttgccggt agttgcccga tttcataacc aaaggcggtc acatcaacat
    21481 cgtgataacg aacttcggtt gaaatcaaaa tatcacctac gtttaaatct ggatctaatc
    21541 caccggcaga gcctgtatta ataatcatat ccggctgggt gagctgtatc agtaaggtag
    21601 tgccgatggc ggcagcaact ttgccgatac ccgattgtaa taatgccaca cgggtattgt
    21661 taattttgcc ttcaaaaatt ttacaacctg ctaattcagt gactttaggt tcaaccatta
    21721 cttggcgtaa aatctcaatt tcttgtgcca tcgcaccaat aataccaatt ttcattactt
    21781 tccttctcta atgtattgtt tattttttga aaaaaacgct attttaacag cattaatagt
    21841 gaggaggggg tgtttcttct gcttgtgaag caacttggct tagttgagcc cctttcaatt
    21901 tctcagcaat atggcgaatc tgagtttgta acttatcaat tgcaaattgt tgctcaataa
    21961 gtgcttgatt taactcttca ataatcagct cttggaaagc aactttagtc tccaattcgg
    22021 taatttttgc cgataatgta taattattat ccatttttta ctaaaaaaag gttgtgtgaa
    22081 aaggaattac actttaccct atcttaaatt ttcttaacag ttatttttat aaggaaaaat
    22141 tatgttaaaa accaaattat cattatttac tcttattgtt ggcacacttt ttagtacaaa
    22201 tgtgatggca gaagaaaaag cagatcctaa atttgtggat gattcctctt atgccgtggg
    22261 tgtattaatg ggtaaaaata ttaatggtgt gattgagtca caaaaggata tttttaccta
    22321 taaccaggat aaaatcttag ccggtgttca ggacacctta aagaaaaccg gtaaattaac
    22381 cgatgaagat ttgcaaaagc agttaaaatc gttagatgcc tatttatctg cgaaagaagc
    22441 aaagattaac gaagaaaaaa ccaaagcaac ggtagctgca ggcgataaat tccgtgctga
    22501 ttataaaaaa cagtctggcg taaaagaaac ggcttcaggc ctgttatata aaattgaaaa
    22561 agcaggtgaa ggcaattcac caaaagcgga agatactgtg aaggtgcatt acaaaggcac
    22621 tttgactgat ggcacggtat ttgacagctc ttacgaccgt ggtgagccga ttgaatttca
    22681 gttaaatcaa ttaattccgg gttggattga agcgattcct atgttgaaaa aaggcggtaa
    22741 gatggaaatt gtagtgccac ctgcattagc ttatggtgat cgtgccgcag gcaaaattcc
    22801 agcaaattca accttgaaat ttgaaattga attattagat tttaaagcag cagatgctaa
    22861 gaaataattc gttattcctt aattattgaa gatacgtaag cggttagatt tattataata
    22921 tttgcaaaaa atgtgataaa actaaccgct tgtaatttgt attatgacca aaaaatttac
    22981 gcctttttct gacgaagatc acgccattct tgcttcttac tttccgatgg tagatgggat
    23041 tgcggcactg attggtgagc attgcgaaat tgtattgcat tcgttagagt ttctggaaca
    23101 ttcggcaatt tatattgcta acggacacaa tactaaccgt aaaatcggct ctccgattac
    23161 tgaccgtgca ttgaaatcgc tgcatcatat ggcaacggat agcgtctcca aaccttattt
    23221 taccaaggca aaaggtggcg ttttaatgaa gtctatcact attgcgattc gtaatggtaa
    23281 acagcacgtt atcgggttac tgtgcattaa tattaatttg gaagtgccta cctcacagtt
    23341 tctcaattct tttattgccc ctgtagatac cgcttcagaa gttacttttg ccagttcagt
    23401 agaagatttg gtttcacaaa cgattcaaac gaccattgat gatgtgatgg cagatcgtca
    23461 aatttctaac aataataaaa atcgtcaaat tgtgatttcg ttatttgaga aagggatttt
    23521 tgatattaaa gattccatta accaagtagc ggagaagctg gatatttcac gccatactgt
    23581 gtatctctat attcgtcaaa ttaagcagga caatgattaa tggattatgt attagcgata
    23641 aaatcaccgg tttatggttc acaaggggca tttttagcct accaagtggc ggaagaatta
    23701 ttaaaagcca atcatacaat ttgccaaata ttcttttttc aagaaggcgt gagcaatgct
    23761 aatgccttag tgaatccagc aagcgatgaa gtgaatttag tcgagatgtg gaaaaaattg
    23821 gctaaattgc accgcttgcc tctgcatttg tgcattgctg ctgcccagcg tagaggcgtg
    23881 gtggatgagc aaatctcagc taatgcaaca cataatttag ccgaaggatt taccctagcc
    23941 gggttaggcg aatttagcca agcagtatta aaagcggatc gattactgac tttttaagat
    24001 gaagaaatat aaacttgcct ttttatttac ccagccacct tttggttcgg cagttagccg
    24061 tgaggggcta gatgccttgc ttgcagctag tgctttttgt gacgagcaag agatagctat
    24121 cctctttatc aatgatggcg tatttaatct cattgccgat caacagccgg aaaaactctt
    24181 acaaaaagat catatttcca ccttcaaatt attggagttg tatgacttaa ctgaatgttt
    24241 tatttgccaa gaaagtgtaa gtttacgagg gctggataat gcagattggt tactgcgaat
    24301 gcttcaattt aaaactcacg ctgagatgat cgcattgctc aatcaagctg aaaaagtaat
    24361 gacgttttaa ggaatattta tgctttatac cctttccaaa gcgaattatg atgaagaaac
    24421 cttaaacttc tttttctcac atcttagtga gaacgatgcg gttgttctgt ggcaagatgg
    24481 cgtgctacaa gcggtcaaaa gtccgcaatt ttttgcaaaa ttgccccgtt gctatttatt
    24541 ggcacaagat gtgcaagctc gaggattgca agagaagctc actgcatttc agtgcatttc
    24601 attatccgaa ttagtcaaat taacagcggt ttattttccc caggttgcac tgtaacctag
    24661 agaggatatt ttttgtaata ccaaataatt tagattatga tgtgattcct aaaaaggaga
    24721 atattatgaa aacaaaatgt cttattccgc tactagcact tacacctgtt atggtgatgg
    24781 cagaagaaaa taacacttgg gtagacaaga aacatgaaac agtaagcact accttagatc
    24841 gttgggcaaa caatattaac agttggctag gtgatgcaga cccagataaa ccgggaacgg
    24901 cttctttacg ggtaatgtta gatagccgtt gggataaaca cgataaattt acttataagc
    24961 cccgtgttcg tggtaaaatc aaactcccta tcttgaaaaa gcatctaaat gtcgtatttg
    25021 gtgatgacga actggataat gagcttaccg ataaaaatca tgctggaaaa ttgtataaaa
    25081 acgtcaatcc aaataaacgc tataactctc gtgaagcgag agattcgaac tcttctatcg
    25141 gtttacgttg gtctgatggc attaaggctt tagggattga gaccgattta gatgctggta
    25201 ttcgttcggg aagcgatatt ttcgggcgtt tacgcatcag taaagattgg aaaatcaccg
    25261 accagttcag tacccgccta gagcaaattt atcgttacgg ttcagagagc aagcactatt
    25321 tacgtactaa ctttgaaaat aaatataccg aaacggatac cacctttatt atgaaccaca
    25381 ccaattttga atatcgtcat gatgtagatg aagaaagaag ttgggggaat agtttatatc
    25441 gtcaacataa cttcaaacca ctcacgcaca tcagctatgg tatcagtatg ggggggcgtt
    25501 tagataaaga gttatcaaaa tttaactatt ggggtccatt tgtctcctat cgtcaaccaa
    25561 tctggcgcaa ctggctcttt atccagcctg aaatcagttt ttataacgac aaagataaag
    25621 atcgtaagca ctttattcag acatttgtac gtttagaggc tatcttctag ctattaagcc
    25681 tcaagtagaa tcttggggct tgtttttgca agcggtcaat ttcttgccaa aatttacaaa
    25741 atccgctata attcctaacc atttttagca aaaattggct gacggcttga ccggtcagcc
    25801 ttttgtgctt gaacgcaagg gctgattttg tcattttaat cagcaaaatt tgcaaatttc
    25861 ctgcccaatt tgaccgcttg cagtagcgat ttctgactgc ttgattggcg attggaaaat
    25921 gacatctcgt acagttttta taatgccact tccaaccgag tctttcgtgt cggattgtgt
    25981 aatctcaacc aaaatatatt tcagaggcta tcttaaaaaa tggcatattc atattccgag
    26041 aaaaagcgta tccgtaagag ctttggcaaa cgcccacaag ttctgaacgt accttatcta
    26101 ttaacaattc agcttgattc ttttgaaaaa tttatcgaaa aagatcctga agggcagcaa
    26161 ggtttagaag cggcattccg ttctgttttc ccgattgtga gcaacaatgg tgcaacagaa
    26221 ttacaatacg tttcttacga attaggcgag ccggtgtttg acgtgcgtga gtgccaaatt
    26281 cgtggtacaa cctacgctgc accattacgc gtgaaattgc gtttagtctc ttacgatcgt
    26341 gaagccgcag ccggtacggt aaaagacatt aaagagcaaa acgtgtatat gggcgaaatc
    26401 ccattaatga ccgataacgg tactttcgtg attaacggca ccgagcgtgt tatcgtttct
    26461 caattacacc gtagcccagg tgtgttcttc gattctgaca aaggtaaaac ccactcttcg
    26521 ggtaaagtgc tttataacgc acgcattatc ccttaccgtg gttcttggtt agatttcgag
    26581 tttgatccga aagataactt atttgcccgt atcgaccgcc gtcgtaaatt gccggcaacc
    26641 attattctac gtgcattagg ctacaccacc gaagaaatct taaatttatt cttcgagaaa
    26701 attaaatttg aaattgccga taataaatta ttgatgacgt tagtgcctga gcgtttaaga
    26761 ggcgagactg catcatttga tattgcagca aacggcaaag tatatgttga aatgggtcgc
    26821 cgtattaccg ctcgtcatat ccgtgcgtta gaaaaagaca atgtgaccca aattgaagtg
    26881 ccggtggaat atattgtcgg caaagtagcg gctcaagatt acgttgattt atcttcaggt
    26941 gaagtgattt gcccggcgaa tatggaaatc tcgatggaga tgttggcgaa tttatcacaa
    27001 gccggttaca accagatcga agtattattt accaacgatt tagaccacgg tccatatatt
    27061 tctgaaacct tacgtgttga tccaacttac gaccgtttaa gtgcgttggt tgaaatctat
    27121 cgtatgatgc gtccgggcga accaccaacg aaagaagcgg cagaagcatt attcgataat
    27181 atgttcttct cggcagagcg ttatgattta tcggcagtag gtcgtatgaa attcaatcgc
    27241 tcgttagaaa ttccggaagg cgtaggcagc ggtattttaa gcaacgatga catcatcggt
    27301 gtgatgaaaa aattaatcga aatccgtaac ggtcgtggtg aagtggatga tatcgaccac
    27361 ttaggtaacc gtcgtatccg cagcgttggt gaaatggcag aaaaccaatt ccgcattggt
    27421 ttggtgcgtg tagaacgtgc ggtgcgtgag cgtttatctt taggcgattt agatggtgta
    27481 acaccacaag atttaatcaa cgctaaaccg atttcagcag cagtgaaaga gttctttggt
    27541 tcatcacaac tttcgcaatt tatggaccaa aacaacccgc tttcagaggt aacacataaa
    27601 cgccgtatct cggcattagg cccgggtggt ttaacccgtg agcgtgccgg ctttgaagtg
    27661 cgtgacgtac acccgactca ctatggtcgt ttatgtccaa tcgaaactcc tgaaggcccg
    27721 aatatcggtt tgatcaactc actatcggtg tatgctcgta ctaataacta cggtttctta
    27781 gagactccat tccgtaaagt ggtgaatggt caagtaaccg aagagatcga gtatttatct
    27841 gcgattgaag aaagcaacaa tatcattgca caggcgaact caaacttaga tgagaacttc
    27901 cgttttaccg atacttatgt aacttgccgt cagcaaggcg aatcgggctt attcaaaccg
    27961 gaagaagttc aatatatgga catctcaacc caacaagtgg tttctgtggc tgcggcgtta
    28021 attccgttcc ttgagcacga cgatgcgaac cgtgcgttaa tgggtgcgaa catgcaacgt
    28081 caggcagttc caaccttgcg tgcggacaaa ccattagtcg gtaccggtat ggaaaaacca
    28141 attgctcttg actcaggtgt agcgattgtc gcaaaacgtg gtggtacggt gcagtatgtt
    28201 gatgcgtcac gcattgtagt gaaagtaaat gaagatgaaa ccattccggg cgaagcgggt
    28261 atcgatattt ataacttaat caaatacacc cgttcaaacc aaaacacctg tatcaaccaa
    28321 gtaccttgtg tgaacttggg tgagccggtt gctcgtggtg aaatcttagc ggacggtcct
    28381 tcaacagact taggtgaatt ggcattaggt caaaatatcc gtgtggcatt tatgccttgg
    28441 aacggttata acttcgaaga ctcaatgtta gtttctgagc gtgtggtaca agaagatcgc
    28501 tttaccacta tccacattca agaattatct tgtgtggcgc gtgataccaa attaggtgca
    28561 gaagagatca ccgctgatat tccaaacgtg ggtgaatctg cattaagcaa attagatgaa
    28621 tcaggtatcg tttacatcgg tgcagaagtg aaaggtggcg acatcttagt aggtaaagta
    28681 actcctaaag gtgaaaccca attaacaccg gaagaaaaac tattgcgtgc gatcttcggt
    28741 gaaaaagcct ctgatgtgaa agattcatca ttgcgtgttc caaacggtac ttcaggtacg
    28801 gttatcgatg ttcaagtatt tacccgtgat ggcgtagaga aagataaacg tgcgaaagaa
    28861 atcgaagaga tgcaactgtg tgaagcgaag aaagacttag cggaagagtt ggaaatctta
    28921 gaagccggtt tatttactcg tgttcgcaac ctattaattg aaggcggcgt aaaagaatct
    28981 gcattagatg gcgttgctcg tgaaaaatgg ttagaacaaa cccttgaaga cgaagcgaag
    29041 caaaatcagt tagaacagtt agcggaacag cacgaagagt tacgcaaaga atttgaacgt
    29101 aaacttgaga tcaaacgcaa caaaattatc caaggcgacg atttagcacc gggtgtgtta
    29161 aaagtagtga aagtttacct tgcggtgaaa cgccaaatcc agccgggtga taagatggcg
    29221 ggtcgtcacg gtaacaaagg ggttatctcg aaaatcaacc ctgtggaaga tatgccatac
    29281 gatgaaaacg gtcagccggt tgaaatcgta ttgaacccgc tgggcgtacc gtctcgtatg
    29341 aacatcggtc agatcttaga aacccactta ggcttagcgg ctcatggtat cggtgatcag
    29401 attgataaga tgatcaaaca gcaacaagaa gtggctaaat tacgtgaata tatgcaaaaa
    29461 gcctacgatt taggtcacgg ctcacaagtc gttgatttaa gcactttctc tgatgaagaa
    29521 gtgatgcgtt tagcgcaaaa cttacgcaaa ggcttaccgc ttgctactcc ggtattcgat
    29581 ggtgcacacg aaagcgaaat caaaggctta ttagagttag gcggcttacc gacttcaggt
    29641 cagatcacac tttatgatgg tcgtaccggt gagaaatttg agcgtccggt aaccgttggt
    29701 tatatgtata tgctcaaatt gaaccacttg gttgatgata aaatgcacgc tcgttcaacc
    29761 ggttcttata gccttgttac tcaacaacca ttgggtggta aagctcaatt cggtggtcag
    29821 cgtttcggtg agatggaggt ttgggcatta gaagcatacg gtgcggctta tactcttcaa
    29881 gaaatgctta cggtgaaatc ggacgatgtg aacggtcgta cgaagatgta taaaaacatt
    29941 gtagatggta cacattatat ggagccgggt atccctgaat cctttaacgt aattaccaaa
    30001 gagatccgtg cattagcaat tgatatggag ctggacgaag cgtaatggtt tcactctccc
    30061 ccttgatggg ggagagacag gcaaaggatt tgttcagaat cctttggcag agagagggtg
    30121 atgcaagcgg tgtaaatttg ctaaattttt gcaaaaatcg accgcttacc ctctccctga
    30181 ttttgcttct gaacgaggca aaatctatcc ctctcccaca aggggagagg gtttaaaatc
    30241 gcaaccaaat tcgtagagtg gatattcttt ccaccaaaca aaacaacctc aaactagggg
    30301 caaaaaagtg aaagacttag tgaagttttt aaaagcacaa acaaaatcga acgaagattt
    30361 tgatgtgatt aaaattggtt tagcatcacc ggacaagatc cgttcttggt cttttggtga
    30421 agtgaaaaaa ccggaaacca ttaactatcg taccttcaaa ccggagcgtg atggtttatt
    30481 ctgtgcacgt attttcgggc cggtaaaaga ttacgagtgc ttgtgtggga aatacaaacg
    30541 tttaaaacac cgtggcgtaa tttgtgaaaa atgtggtgtt gaagtaaccc aaactaaagt
    30601 acgtcgtgag cgtatggggc acattgaatt agcttgccct gtcgcacaca tctggttctt
    30661 aaaatcacta ccgtcccgta tcggtttaat cttagatatg ccgttgcgtg atattgaacg
    30721 tgtgctttat tttgaatctt atgtagttac tgaaccggga atgaccgatt tagagaaaaa
    30781 tcagttatta accgaagaac aatttatgga cgctgaagag cgttggggtg atgaatttga
    30841 agcgaaaatg ggtgcagaag gtatccaagc attacttcgt gatttagatt tagaacacca
    30901 atgcgaaacc ttgcgtgaag agttacaaga aaccaattca gaaaccaagc gtaaaaaaat
    30961 cactaagcgt ttaaaaacct tagaagcatt cttacaatcc ggcaacaaac cggaatggat
    31021 ggtgatgaca gtattaccgg tacttccacc ggatttacgt ccgttagtac cgcttgacgg
    31081 tggacgtttt gcgacttctg acttaaacga tttataccgc cgtgtaatta accgtaacaa
    31141 ccgtttaaaa cgcttgttag atttagttgc accggacatc atcgtgcgta acgaaaaacg
    31201 tatgttacaa gagtcggttg atgcgttatt agacaacggt cgccgtggtc gtgcgattac
    31261 cggttcgaac aaacgtccgt taaaatcttt ggcagatatg atcaaaggta aacaaggtcg
    31321 tttccgtcaa aacttattag gtaaacgtgt agattactca ggtcgttcgg taattaccgt
    31381 aggcccatac ttacgcttac accaatgtgg tttaccgaag aaaatggcgt tggaattatt
    31441 ccgtccgttt atctactcaa aattagaaaa ccgtggcatt gcttcaacta ttaaagccgc
    31501 gaagaaaatg gtagagcgtg aagatcctat cgtatgggat attcttgccg aagtgattcg
    31561 tgaacacccg attctactta accgtgcacc aacacttcac cgtttaggta tccaagcgtt
    31621 tgagccgtta ttgattgaag gtaaagcgat ccagttacac ccactcgtgt gtgcggcgtt
    31681 caatgcggac ttcgacggtg accaaatggc ggttcacgtt ccattaaccc ttgaagcaca
    31741 gttagaagct cgtgcgttaa tgatgtcaac caacaacgta ctttcaccgg caagtggtga
    31801 tccgattatc gtaccgtctc aggacgttgt actcggtctt tactatatga cccgtgagaa
    31861 agtaaacggt aaaggtgagg gaatgtactt ccttgaccct cgtgaagcgg aaaaagcata
    31921 ccgtaccggt caggctgaat tacattctcg tgttaaagtg cgtgttactg aatatgagaa
    31981 aaacgaagca ggcgaattag aagcaaaaac ttcgttagta gataccacca ttggtcgttc
    32041 aatcttatgg atgattgcac caaaaggtat gccgtttagc ttgttcaacc aaaccttagg
    32101 caaaaaagcg atctcgaaat taattaacga gagctatcgc cgtttaggtt taaaagaatc
    32161 tgtggtttta gctgaccaaa ttatgtacac cggctttgct tatgctgctc gttctggtgc
    32221 ctcagtaggt atcgacgata tggtaattcc ggagcaaaaa tacgcaatca ttgaagcggc
    32281 tgaagcggaa gtcgctgaga tccaagagca attcaacggc ggtttagtaa cagccggtga
    32341 gcgttataac aaagtgatcg atatttgggc tgctgcaaac gaacgtgttg cgaaagcaat
    32401 gatggaaaac ctttcaacgg aagaagtaat caaccgtgaa ggtaatccgg aaaaacaagc
    32461 ctcatttaac agtatcttta tgatggcgga ctccggtgct cgtggttctg ctgcacagat
    32521 tcgtcagtta gcgggtatgc gtggcttgat ggctcgtccg gacggttcga ttatcgaaac
    32581 cccaattact gcaaacttcc gtgaaggttt gaacgtatta cagtacttta tttcaaccca
    32641 cggtgcacgt aaaggtcttg ccgatacggc attaaaaaca gcgaactccg gttacttaac
    32701 ccgtcgttta gttgatgtgg cacaagattt agttatcatt gaagatgact gtggtacgca
    32761 cgaaggtatc gtgatgacac cacttatcga aggtggtgat gtgaaagaag ccctgcgtga
    32821 tcgtgtatta ggtcgtgtgg tggcagaaga tgtgttaaaa ccgggtacag atgaagtatt
    32881 aattccacgc aacaccttat tagatgaaaa atggtgtgat gtggtggatc gtgaatctgt
    32941 ggatgtgatc aaagtacgtt cggtagtaac ttgtgataca gacttcggtg tgtgtgctaa
    33001 atgttacgga cgtgacttgg ctcgtggtca cttaatcaac caaggtgaag cggtcggtgt
    33061 tattgcggca caatctatcg gtgagccggg tacacagtta acgatgcgta cgttccatat
    33121 cggtggtgcg gcttctgcgg cagcaaaaga atctagcatc caagtgaaaa acgcaggtac
    33181 gattaaatta accaacgcta aatttgtaac caacaaagaa ggcaaaatcg tattaacttc
    33241 tcgtaatact gaattaactg tcatcgacac cttcggtcgt accaaagaaa actataaagt
    33301 gccttatggt gcggtgcttt ctaaacacga cggtgcagaa gtggctgtgg gtgaagtggt
    33361 tgcgaactgg gatccgcaca caatgccggt aatctcagag gtatcaggtc gtatccaatt
    33421 tagcgacatc gtagatggct taaccgttac tcgccaaacc gatgaattaa ccggtttatc
    33481 atctatcgtg gtgcaagatg tgggtgaacg tgcaaccgca ggtaaagatt tacgtccggc
    33541 attacgctta gttgatagca acggcaaaga catcttaatt ccgggtacag acgttgcagc
    33601 acaatacttc ttaccgggta aagcaatcgt aaccttagac gatggtgcag aaattgaagt
    33661 cggtgaagcc ttagcccgta ttccacaaga atctgtgggg acgaaagata ttaccggtgg
    33721 tcttccacgc gtagcagact tattcgaagc ccgtaaaccg aaagagccgg caatcttggc
    33781 ggaaatttca ggtattgtgt cgttcggtaa agaaaccaaa ggtaaacgcc gcttggtaat
    33841 tactccggcg gaaggcgaag cgtttgaaga gatgattcca aaatggcgtc agctcaacgt
    33901 atttgaaggc gagatggtac aacgtggtga tgtgatatca gacggtgcag aaactccgca
    33961 cgacatctta cgcttacgtg gcgttcacgc cgttaccgac tacatcgtaa acgaagtgca
    34021 agaagtttac cgcttacaag gggtaaaaat taacgacaag cacatcgaag tgattgttcg
    34081 ccaaatgttg cgtaaagctg tgatcaccaa cgcttacgac tctgaattct tagagggcga
    34141 acaagtggaa gtggctcgtg tgaaaattgc caaccgcaaa cgtgctgaag aaggcaaacc
    34201 gttggtagaa tttgaacgtg aattgcttgg tattaccaaa gcatctcttg caacagaaag
    34261 ctttatttct gcagcctcgt tccaagaaac cactcgagtg cttaccgaag ccgcagtggc
    34321 aggtaaacaa gatgaattgc gtggcttaaa agagaacgta atcgttggtc gcttaatccc
    34381 ggcaggtacc ggttttgctt accaccaagc acgagctaaa aaacgtgccc aactggaagc
    34441 aggaattgca gttgtccctg aatttgaagc accggcagct aaagccaatt cattcgttac
    34501 cgatgcagac atcgaagctg aatttgaatt tgttgcagac gatgcaaccc aaagtttagc
    34561 agcgttgtta aatgcgggtg aggaagagta atagctcgta gggtatgata aattaaaaaa
    34621 tctcctagaa tataatttct aggaggtttt ctacttgaat ataagggaaa aatatataga
    34681 atgtaagggc ttattcaatt tgtggataag gtaatcaaca gtatgtcaat agttgataac
    34741 atttcataaa gcg
//
LOCUS       DANLRW010000013        34419 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.013, whole genome shotgun sequence.
ACCESSION   DANLRW010000013 DANLRW010000000
VERSION     DANLRW010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 34419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34419
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.013"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(35..595)
                     /locus_tag="PXA71_000500"
     CDS             complement(35..595)
                     /locus_tag="PXA71_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104645.1"
                     /translation="MKKSFLSLLVLGTTMALAACDQAKEAAQSTTDKAVEVKEAVAEK
                     AAEVKSATEAKVEELKAAANDAAQATADKTEEAKKAVAEKATELKTTTEAKVEELKAA
                     ANDAAQATTDKTEEAKKAVAEKAAELKATTEAKVEELKAAASDATQATADKAEEAKKA
                     VAEKAAEVKVETETKVEEMKKAIESK"
     gene            complement(741..3683)
                     /gene="rne"
                     /locus_tag="PXA71_000501"
     CDS             complement(741..3683)
                     /gene="rne"
                     /locus_tag="PXA71_000501"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HDL5104646.1"
                     /translation="MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKG
                     KITRVEPSLEAAFVDYGAERHGFLPLKEISREYFPSDYVFNGRPNIKDIIQEGQEVIV
                     QVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDV
                     PEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAI
                     RDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRVKLYEGEVPLFSHYQIESQIES
                     AFQREVRLPSGGSIVIDVTEALTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLR
                     LRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFARISRFGLLEMSRQRLS
                     PSLSEASSHICPRCQGTGKVRDNESIALSILRLLEEEAIKENTAQVHTIVPVQIASYL
                     LNEKRKAISSIEKRHDVQIVVVPSESMETPHFSVYRLRENEITPTLSYDLTKHYEARH
                     EEEHPHHHHQEDVLVTRNEPVITVESVLQSSELNLQPSPTPTEPPKPSLLSRLIATIK
                     GWFSEEKVEEKPKPKARNQRERRQRRERPNRNAKAENQERKTPQAQTTPAEEKPMRSE
                     KKARRAVVEEVSGVTEQESRSNSREVQTERRQRRDLRKKVRIETQEVEVENLTPAVEE
                     TVAKQVENVQKNQQIQPLATQEVPVETAPEVETTNEGRENNRQRRLPRHLRVGNQRRR
                     ENQRNQVISPMPLTSAVASPELASGKVWVQVTSTVKVEEKASFLSVDQMLEQQENQLV
                     ETEKKSEEKKLHTVSPLGGFVAQATNRDLVKEKQEQLSKPKEEKVASEDVKPVEVKEH
                     IAPFGSVVAQHSERDLVKEKNERVSKFQSQATVAPAIVEEVTNPIEVPKSTYESDYRF
                     NGRLGTFSRVEHTQAAMTIASAPSDKLEVVEISQWQNSKYYFYGKGFGGYTSAVSQVQ
                     SAPRSTNG"
     gene            complement(4140..4985)
                     /locus_tag="PXA71_000502"
     CDS             complement(4140..4985)
                     /locus_tag="PXA71_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDL5104647.1"
                     /translation="MMSQEQFEEINQERRQALNHGSRIAMAASVLGALGIASTANAKQ
                     ASAEKSPYAEPEQYGLKRHGMTIDPKRVALVVVDPQIDFLGPKGVMWGVLGDSIKENN
                     TVANIESLFKAAKAVDMPTFVSPHYYYPTDHKWEFGSPGEHFMHDSGMFARKGQYTME
                     GFENSGADFMPEYKPYIFDGKTVITSPHKIFGPETNDLVLQLRKRKIDQVILAGMAAN
                     LCIDSHLRELIEQGFEVTVVKDATAGPRIPEGDGYLAALTNYRIIANDLWTTEEAVKK
                     MTAKA"
     gene            5112..5918
                     /locus_tag="PXA71_000503"
     CDS             5112..5918
                     /locus_tag="PXA71_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5104648.1"
                     /translation="MDSLTHLFTQFQFRTDLFHLGQLCQIGSFNEENKGYLHFVRQGR
                     FILNQAAERPAIIFSPTNILHSLHPLDDSGLDIFCINFDFGKGIRNPLTHTLHNIVIL
                     ELAQYPELGVLADQIFSEVNQKGCGYQAMIHHLCAYFTLKVARQCLEKGYIQTGLLKG
                     LADKQLGKVLLAIHNAPERDWNVEELANVALMSRSRFAAYFKQTMGVSPMDYLTNWRL
                     AVAQHLLQKGIPVALVAEQVGYSHNAALSRVFMRELGLSPTEWLAQNKES"
     gene            complement(6003..7466)
                     /gene="ubiD"
                     /locus_tag="PXA71_000504"
     CDS             complement(6003..7466)
                     /gene="ubiD"
                     /locus_tag="PXA71_000504"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HDL5104649.1"
                     /translation="MKYKNLREFLDFLESQGELVRIQQEIDPYLEMTEIADRTLRKGG
                     PALLFENPKGYQMSVLCNLFGTPKRVALGMGQEDTKALRELGKLLAFLKEPEPPKGFK
                     DLIGQLPQWKQILNMPPKVLSKADCQQVVISGDEVDLYKLPIMHCWPGDVAPLVTWGL
                     TITQGPYKKRQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWKAENPGKPFLVSVAI
                     GADPATILAAVTPVPDTLSEYAFAGLLRGHKTEVVKSISNELEVPASSEIVLEGYIDL
                     EETALEGPYGDHTGYYNEQEYFPVFTVTHITMRKDAIYHSTYTGRPPDEPAVLGEALN
                     EVFIPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQFMYT
                     KFVIVCDDDVNARDWKDVIWAITTRCDPARDTTLIEHTPIDYLDFASPIAGLGSKMGI
                     DATNKWAGETTREWGTPIEKDDNVVKRIDEIWDSLGI"
     gene            7603..8577
                     /gene="znuA"
                     /locus_tag="PXA71_000505"
     CDS             7603..8577
                     /gene="znuA"
                     /locus_tag="PXA71_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HDL5104650.1"
                     /translation="MFKRTLIGLAVLGASVAQADVLTSIKPLGFIASAITEGVTETKV
                     LLPVTASPHDYSLKPSDVTQLQSAQLVVWVGDGLEGFLEKSIEKLPREKVLTLEDVDA
                     IDDIVDKASKKEDKDDDHDHKHEHKHEHKHEHKHEGHNHEGHNHDHHGHSHDEDWHIW
                     LSSEASELAAEQIAARLSEQMPEHKAKIAENLAKFKANLTAKKAEIAKQLEPVKAKGY
                     YTFHDAYGYFEREYGLNSLGSFTINPTVAPGAKTLTAIKKNIAKNKAQCLFAEPQFTP
                     KVIETLAKETKVNVGQLDPLGAKVQLSATAYPEFLQVLADEFSQCLTK"
     gene            complement(8629..8949)
                     /locus_tag="PXA71_000506"
     CDS             complement(8629..8949)
                     /locus_tag="PXA71_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnA domain-containing protein"
                     /protein_id="HDL5104651.1"
                     /translation="MIYPTCPECKSENTYHDSIQFVCPDCAYEWTGEETDQDDDVLIV
                     KDSNGNLLSDGDDVLLIKDLKLKGSSEVLKKGTKFKGIRLAQGDHNVDCGKIMLKSEF
                     LKKA"
     gene            9090..11453
                     /gene="rnr"
                     /locus_tag="PXA71_000507"
     CDS             9090..11453
                     /gene="rnr"
                     /locus_tag="PXA71_000507"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HDL5104652.1"
                     /translation="MIVDPNYQQELEKYENPVPSREFILNTIREHNAPMSRDELLSAF
                     HIDDEERMEGIRRRLRAMENDGELVFTKGKRYALPEKMDLIKGTVIGHRDGYGFLQVE
                     GHEKGATKSEDWFIPNAQMVKVMHGDFVLAQPNGTDRRGRKEVRIVRVLEARKKQIVG
                     RFFLESGIGFVVPDDSRVNQDILIPDEHRMGARMGQVVVVELQERKASFSRPVGIITE
                     ILGDNLAPGMEIEIALRNHDIPHIWPEGVEKQIRQFSSEEVPEEAKQGRVDLRDLPLI
                     TIDGEDARDFDDAVFAKKEGNGWRLWVAIADVSYYVRPKTALDLEALNRGNSVYFPNR
                     VVPMLPEVLSNGLCSLNPQVDRLCLVAEMSVSSKGELQDYQFYEAVMNSHARLTYTKV
                     WKMLEGDEALRERYAPLVPHIEELYAMFQTLMKARHKRGAIEFETIENQFIFNPQGRI
                     ERIEPLIRNDAHKLIEECMILANIAAARFVEKANEPALYRIHDKPSEEKLLSFKSFVR
                     ECGLTWDVGLDPTPKDYGVLLEQIAERADKELIQTMLLRSLKQAVYAADNIGHFGLAL
                     TEYAHFTSPIRRYPDLLLHRAIKYLIEKGKGNTRYYTDGGGYHYKLDDMDEFGDKCSA
                     TERRADEATREVADWLKCEFMQDHLGEEFDGVISSVTGFGLFVKLNELLIDGLVHIST
                     LDNDYYHYDADRQRLIGGSGIIYRLGDAVRVKVINVNLDEKKIDFELLTGNKKTGKTA
                     KKKAKATEVPVFKEPKTVKKAKKVAEKKPAKSAKKRTKTTASKSRKK"
     gene            11457..11723
                     /locus_tag="PXA71_000508"
     CDS             11457..11723
                     /locus_tag="PXA71_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104653.1"
                     /translation="MDYKKQILFSLLFALVIAIISYFLFTYIPFDCSDLSKLNDSQRL
                     ECRTAEFLGVYYWLPHTTTLFFGSVLLYWAVYGMISLVQAVLKR"
     gene            11946..12404
                     /gene="mraZ"
                     /locus_tag="PXA71_000509"
     CDS             11946..12404
                     /gene="mraZ"
                     /locus_tag="PXA71_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HDL5104654.1"
                     /translation="MFRGASSISIDSKGRIAIPTRYRAELLEKHHGILVCTVDIRQPC
                     LLLYPLHEWEMVEQKLLALSNFDPVQRRIQRVMQGFATECEMDSAGRILLSPTLRQHA
                     QLEQQIMLVGQLNKFEIWQDKQWQAQIAEDLAFGSSAEILDCEALKNLSL"
     gene            12420..13358
                     /gene="rsmH"
                     /locus_tag="PXA71_000510"
     CDS             12420..13358
                     /gene="rsmH"
                     /locus_tag="PXA71_000510"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDL5104655.1"
                     /translation="MSENPKHITVLLHEAVDGLAIKPNGIYIDGTFGRGGHSRLILSK
                     LGENGRLIATDRDPRAIAEAQTISDPRFQIEHTAFSAIPELCERMGLVGKIDGILLDL
                     GVSSPQLDEAERGFSFMRDGPLDMRMDTTKGLSAAEWLAQVSAEDLAWVLKEFGEERF
                     AKRIAQAVVSYNKSANEKISRTLQLAQIIADAVPFKDKHKHPATRSFQAIRIFINGEL
                     DELEKALNSALTVLAPEGRLSIISFHSLEDRMVKQFVRKHSKGMDVPRGLPILEAELT
                     KNIPLKTIGKAIMPSEAEIEANARSRSAVLRIAEKR"
     gene            13377..13688
                     /gene="ftsL"
                     /locus_tag="PXA71_000511"
     CDS             13377..13688
                     /gene="ftsL"
                     /locus_tag="PXA71_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HDL5104656.1"
                     /translation="MSNERYPLHQIIIDDIFSHNKVALLLLIGVVISAVATIWITHQT
                     RLSVSEQGQLIQANQKLESQYTNLQLEENSRSSRARVDAAAKSFGLQPIKKEQEIILV
                     E"
     gene            13692..15752
                     /locus_tag="PXA71_000512"
     CDS             13692..15752
                     /locus_tag="PXA71_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsI"
                     /protein_id="HDL5104657.1"
                     /translation="MVKSVKLKRKQEAPVAKAEPQQAEGKKTPSFLPTRFRVVVFFML
                     LMVGGLLAQTAYIQLFDSERLIKEANNRSLRTKELQFTRGRILDRNGRFLSISVPMYS
                     LTLDPREYFDTKLRRSNESWRALAIEMETSKGKIEANVNKFIEKKNFSKEKVDFDPRS
                     ILNTKSEGYWTQLAQVTGLDYNSLIEKVRNNPSSVFLRLDNENLVRERQKFQALSKEI
                     GRSYNDIMDELYSKNRQRFLYLSRHQSEAISEYAKELDIDALVIKVESRRFYPLAEES
                     SQLIGFTDKDDMHGSEGLERSFDSLLIGKNGKQIIRKDAKGNIVENIRSEKQYDPQDV
                     MLSIDEELQSMVYGEIKKAVQENNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFK
                     PELMRNRAITDTFEPGSTVKPFTVLTALQNGVTYRDEVIGTRPFVVNGHTIKDVAPRD
                     SLTLTGILQKSSNIGVSKLALRMPANALVDTYTKVGFGKDTGLGLGEQRGTNGDRKRW
                     ADIERATLSYGYGLNVTPLQLARAYATLGSFGLYRPLSITKVDPPVIGERVLPEKTTR
                     DVVHMMESVAAKGEGGHRAAVDGYRVAIKTGTARKLEKGKYVEKYIAYTAGLAPASDP
                     RFALVVLINEPKAGNYYGGFVSAPLFSRIMGYTLKQRNIKPDNLTENTQSAVREIKLE
                     RPIN"
     gene            15761..17251
                     /gene="murE"
                     /locus_tag="PXA71_000513"
     CDS             15761..17251
                     /gene="murE"
                     /locus_tag="PXA71_000513"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HDL5104658.1"
                     /translation="MKRLLPFLTELDAWVEELTELKQMTLDSRQVQAGDLFVALKGHQ
                     VDGRKFIPNAIEQGAAIILAEADEDQPEIELDPKFAKFNLDRTACCKVVSVPRLPKLL
                     SEIAGALYHNPSHKLTLAGITGTNGKTTTAQLLAQWHNLLGGKSAVMGTIGNGLYGQV
                     QEAVNTTGSAIEIQHNLANFVELGADFCAMEVSSHGLAQFRAEALDFDLAIFTNLSRD
                     HLDYHNTMEEYAQAKFRLFNELSTKAQVINADDEIGREWLTQLPNAVAVSTDPKFAGN
                     HQFVKATAVKFTLQGASIAFESSWGNGELHSRLIGAFNVNNLLTAFAGLLALGFDIQE
                     LVKTAPNLVGVAGRMECITAPNKPMVIVDYAHTPDALEKALQAARLHCEGELWCIFGC
                     GGDRDAGKRPLMATIAEKLTDKVIATDDNPRTEDNQKIMADIVKGFSKPQQIIHNREE
                     AIKTAIEQAKATDVILIAGKGHEDYQIIGTEKLHFSDQETARKYLF"
     gene            17339..18733
                     /gene="murF"
                     /locus_tag="PXA71_000514"
     CDS             17339..18733
                     /gene="murF"
                     /locus_tag="PXA71_000514"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDL5104659.1"
                     /translation="MIKLTTQQIAEILNAKLIGNGETVVETTSTDTRQAVENGLFFAL
                     KGENFDAHHYLQNAVAQGCVAVVVERECEIDVPQLVVADTRLALGELAKWLKAKLNPK
                     TVAMTGSSGKTTVKEMTAKILQKMTACEQEVLYTFGNLNNDLGVPMTLLRLTEQHKYA
                     VIELGANHIGEIAYTTAIAQPDACLVNNVAAAHLEGFGSLAGVAQAKGEIYRGLKENG
                     KAIVNLAFYYPQWQKEIGSREMQSFSYIGSDSDSYADYWAEDVELHLSGSRFTLHTPQ
                     GEIAIDLPYLGKHNVSNALAATSLAMSVGATLEAVKAGLEQRSMVKGRLYPVQINDHC
                     LFIDDTYNANVDSMKSAISVLENYPAYRIFAVGDMAELGEESSKCHQEVADFAKNAAL
                     DLIVSFGKESAVISQQAEHHFTDKQQMVDFLLPIILQKIEQKQPLVLLAKGSRSQKME
                     TVISELCKPFNLNF"
     gene            18754..19836
                     /gene="mraY"
                     /locus_tag="PXA71_000515"
     CDS             18754..19836
                     /gene="mraY"
                     /locus_tag="PXA71_000515"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDL5104660.1"
                     /translation="MLVWLAELLVQYNTAFNVVSYITFRAIMALLTAMGIGLWIGPKV
                     IRRLQILKFGQEVRNDGPESHFKKRGTPTMGGVMILAAIGVSTLLWADLRNSYVWFTL
                     FVLFGYGAVGFVDDYRKISRKNTDGLIARWKYFWLSAIALVAVFGMYAVGKDTAATQL
                     VVPFFKDVMPQLGLFYIVLSYFVIVGTSNAVNLTDGLDGLAIVPTIMVASAFALIAWA
                     TGNFNFAQYLHIPFIPNAGELVILCTAIVGAGLGFLWYNTYPAQVFMGDVGSLSLGGA
                     LGVIAVLVRQELLLVVMGGVFVVEALSVILQVGSYKLRQKRIFRMAPIHHHFELKGWS
                     EPRVIVRFWIITLMLVLVGLVTLKLR"
     gene            19900..21201
                     /gene="murD"
                     /locus_tag="PXA71_000516"
     CDS             19900..21201
                     /gene="murD"
                     /locus_tag="PXA71_000516"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDL5104661.1"
                     /translation="MQKQYENKTVTIIGLGTTGLSCVDFFKKKNANIQVIDTRANPAG
                     ADKLDVTIPLHTGGLNSEWLLKSDLIVISPGLAVATPEIQQAIQAGVEIVGDVELFCR
                     EAKAPIIAITGSNGKSTVTTLTTEMAKQAGIKVGMGGNIGVPVLSLLEGDYDLFVLEL
                     SSFQLETTYSLKAKAATVLNISEDHMDRYDSIADYRQAKLRIYDNAENIIVNGEDAQT
                     YPIQAVKKVIRFAEQNAEYSLRNQMLYSGDDAIIQTKQMLISGRHNEMNALAAMALAE
                     AANVPREGIVKALQIYGGLPHRFQAVATNDGVRWVNDSKATNVGSTVAALNGLNIAGT
                     LYLLLGGDGKAADFSELKPLINKPNIVCYCFGQDGAALAELSEQSVLVETMQQAIEAI
                     RPQLKKGDMVLLSPACASLDQFKNFEQRGEVFMALAQGQHA"
     gene            21201..22379
                     /gene="ftsW"
                     /locus_tag="PXA71_000517"
     CDS             21201..22379
                     /gene="ftsW"
                     /locus_tag="PXA71_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HDL5104662.1"
                     /translation="MLERIKSEWDKWVRLTPSNSLYDRTLIWLFLGLLIIGFVMVTSA
                     SLPVSTRLNNDPFYFAIRDGLYIIASIIFCYVFVQIPIEKWEKHNLALFFISIGFLIA
                     VLIFGRSINGAVRWIPLGILNFQPAELAKLAVICYFASFYVRKYDEIRKEKASFWRPA
                     VILFLFGFLLILQPDLGSTFVLFVLTFSMLFIVGAKIMQFMFLGVVGTVLFAVLILTS
                     EYRLKRVTSFMDPFADAYGDGFQLSNSQMAFGQGEFWGQGLGNSVQKLEYLPEAHTDF
                     VMAVIGEEFGFFGIACIVLLLILLTVRALKISKESLVLEERFKGYMAFGIAIWVFLQG
                     FVNLGVASGLLPTKGLTFPLVSYGGSSLVIMSIAIAVLLRIDHENRAERIGHAKIKTI
                     "
     gene            22498..23553
                     /gene="murG"
                     /locus_tag="PXA71_000518"
     CDS             22498..23553
                     /gene="murG"
                     /locus_tag="PXA71_000518"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDL5104663.1"
                     /translation="MAKKLLVMAGGTGGHVFPAIAVARELQKQGWQIRWLGTKDRMEA
                     TLVPKHGIEIDFIEISGLRGKGVAALLKAPFAIFKAVMQARKIIKNYQPDAVLGMGGY
                     VSGPGGIAAKLCGVPVILHEQNAVAGLTNVWLSKIARKVLQAFPTAFKEAEVVGNPVR
                     EDLSALPLPNERFAKRGYPINILVMGGSQGARVINQTVPEVAKVLGNNVFISHQVGKG
                     NLAGIEEVYQQTGNGIASEFIDDMKAAYEWADLVICRSGALTVCEIAAVGLPAVFVPF
                     QHKDRQQFLNANYLAADGAAVIIEQSDFTPKALQQALEPLIANRQLLLDMSMRARAKS
                     TPMAAKRVAEVIIQEAN"
     gene            23629..25056
                     /gene="murC"
                     /locus_tag="PXA71_000519"
     CDS             23629..25056
                     /gene="murC"
                     /locus_tag="PXA71_000519"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDL5104664.1"
                     /translation="MKNFQDKVKKLVPEMRRVSQIHFIGIGGAGMSGIAEVLLNEGYQ
                     ISGSDIADRAVTQRLSAAGAKVFIGHQAENIAGASVVVVSTAIDETNPEIIAAREARI
                     PVIRRAEMLAEIMRFRHGIAIAGTHGKTTTTAMISMIYTEAKLDPTFVNGGLVKSTGK
                     NAHLGASRYLIAEADESDASFLHLQPMVSVVTNIEPDHMDTYGGDFEKMKETYVRFLR
                     NLPFYGLAVMCADDETVMEIAPRVGRQVITYGFSENADYRIEDYQQTGFQEHYTVVCP
                     SGERIDVLLNVPGMHNALNATAALAVAKEEGIGNEAILAALADFQGAGRRFDQLGSFI
                     RPNGKIMLVDDYGHHPTEVDVTIQAARSGWEGKRVVMIFQPHRYSRTRDLFDEFVQVL
                     SKVDALILLDVYAAGEAPIVGADSKALARSIRNLGKVDPILVSDTDQLGEVLDQIIQD
                     GDLILAQGAGSVSRISRGLAESWKN"
     gene            25146..26057
                     /locus_tag="PXA71_000520"
     CDS             25146..26057
                     /locus_tag="PXA71_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDL5104665.1"
                     /translation="MSIKNEKIAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGID
                     TKEFPIEKLKEKGIQRVFNILHGGIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFR
                     TKLLWNAVGLPTADMVVVQRGQAVDFDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEE
                     LAPAIHEALKFDSIVLVEEFLAGNEYSVPVLDGQVLPAVQVIPDGEFYDYHAKYVSDN
                     TQYVVPALNDERQAEVAKLVKAAYDVVGCRGWSRIDVMEDGEGKFRLVEVNTNPGMTS
                     HSIFPKSAATVGISFEKLVERVLELSA"
     gene            26057..26848
                     /locus_tag="PXA71_000521"
     CDS             26057..26848
                     /locus_tag="PXA71_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HDL5104666.1"
                     /translation="MGIFRKKNSTNVRLNVLNPKTPVSPRKWLVFIKPLIVLLCTLFV
                     FGVYSNWQNILESWDKTPIRAYALTHKTQFTTNADIRETLSKEPALKGYFGQNIQEVK
                     DKLLSIPWVKDVAVRKLYPDRLSITLLEHKPVAIWNDTNFVSEQGTVFSLPKDRIDKN
                     GLPLLYGPDTEGKSVLEAWNKIRADLNARNLDLTSVSVDNRGSWTIRLSNQVELRLGR
                     GEWTSKIDRFVTIFPEIHIPEGNRLAYVDLRYPHGAAVGFSPIKN"
     gene            26871..28142
                     /gene="ftsA"
                     /locus_tag="PXA71_000522"
     CDS             26871..28142
                     /gene="ftsA"
                     /locus_tag="PXA71_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDL5104667.1"
                     /translation="MTKAVESKIIVGLDIGTSKVVAVVGEVLPDGVINVMGAGVCPSK
                     GVDRGGVIDLDAAVNSIQRAIEQAESIADCQIMGVTLAISGQHIVGLNEAGSSTLSGG
                     IVTQDNIESAVDMAKAIKLQDGLETLHMIPQEYHVDRLPATKNPIGLSGMRLQVQAHL
                     IACHQAWLKNLKNAVEHAKLKVDQVVFSGLASSYSVLTEDEKELGVCLIDIGGGTMDV
                     LVYTDGALRYSKVIPFAGNNITDYLARVFTTSRPEAESLKVGYGSAISPPTHNSDKKI
                     EVAGLGGRMARTFTRAQVATVTSQCYNDLLKVVEEELTQLRHELFQKGIKQELIAGVV
                     ITGGGSQIEDIVECAKSIFGSQVRVGYPLNITGLTDYVNKPQYATALGLLQYSHYNYT
                     EQGTSTDSNEDIFAPIGRGTKKIIDFFKSKF"
     gene            28175..29422
                     /gene="ftsZ"
                     /locus_tag="PXA71_000523"
     CDS             28175..29422
                     /gene="ftsZ"
                     /locus_tag="PXA71_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDL5104668.1"
                     /translation="MFEPIIEQTQDAIIKVVGVGGGGGNAVDRMSRSADDIKGVEFFD
                     VNTDAQVLRKRTTRQTIQIGASTTKGLGAGADPMVGKQAAEEDREAIANALKGANMTF
                     IAVGMGGGTGTGAAPVVAQIAKEQGSLTVGVVTKPFRFEGPRRMRFADQGIKELSQYV
                     DSLIIIPNDKLRGLGKQTTAVDAFAAANDVLSNCVLGITNMITSSGGSTGADINVDFA
                     DVRTVMSGKGHAMIGTGFAEGEVGEGRAEKAMNDAISSPLLENVDISGASGMLINISA
                     GTDFLLEEVYAMMDLIYGFATEDAAIVFGCNYYPEMDGKVSVTLVATGIGQPEEALHM
                     PHKAQPVYAQQGNHVQATQPTQPNHAVQQPNFTQPSSYGQPNQFSGQPQPLQQPVAPK
                     PQSVDTAQIFNPNSIPGFMRNSQ"
     gene            29454..30374
                     /gene="lpxC"
                     /locus_tag="PXA71_000524"
     CDS             29454..30374
                     /gene="lpxC"
                     /locus_tag="PXA71_000524"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HDL5104669.1"
                     /translation="MTKQRTLKQAAKVTGIGLHSGKKVTLTLRPAPANTGVIYARTDL
                     EPVVYFPASADSIRDTQLCTCMVNDDGVRISTVEHLNAAMSALGLDNVIVEVDAPEIP
                     IMDGSSSPFIYLLLDAGIEEQDAPKKFIRIKETVRVEEGDKWAELKPYNKGFKLNFTI
                     DFEHPLIPKNVGSYSIDFSAENFIQQLSRARTFTFMKDVEYLQSIGLALGGSLDNAIV
                     LDDYRILNEDGLRFKDELVRHKMLDSIGDLYMCGYNILGEFSAYKSGHGVNNKLLRAV
                     LENKNAWEFVTFEDKAEVPQGYQVQQEIFI"
     gene            30547..32229
                     /gene="recN"
                     /locus_tag="PXA71_000525"
     CDS             30547..32229
                     /gene="recN"
                     /locus_tag="PXA71_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HDL5104670.1"
                     /translation="MLTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGL
                     CLGYRSESGMIRNGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINI
                     DGRSKAFVNNRSLPVSQLRELGQYLIHLNGQHAPQLLLKNEYQLEIVDHYATLQPLLM
                     KMAKQYGNWKELNKQVKNFQKQCQENEARKQLLEYQVEELDEFAIKANEFEEMEEKYN
                     ILSSSEELTELSDEITRLLSDDEINANSLIYKALRNAENLAEVDSQYQGILDMLNEAL
                     IQIQEASSEVAQLASKIEQDPELLQELDNRIAQTISLARKHHIQPNELWQYHATLKAE
                     LQELLDFEDNEEQLIQNEKQAYQECITLAEEIYQKRLDATHKLSEQVTKQIKHLAMEN
                     GEFFIHIEHNLEKMSANGADYVEFNLRSNLGQQPQPLAKIASGGELSRISLAVQVLTA
                     NKLSTPTIIFDEVDVGISGSAATTVGKLLRKLGEKCQVLCVTHLPQVASYGNQQFNVQ
                     KYVENNQTETQMTLLTEAERIHALARLLGGSEITETVLANAKEMLNLAKNNE"
     gene            complement(32276..32351)
                     /locus_tag="PXA71_000526"
     tRNA            complement(32276..32351)
                     /locus_tag="PXA71_000526"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(32316..32318),aa:Ala,seq:ggc)
     gene            complement(32431..33870)
                     /gene="gltX"
                     /locus_tag="PXA71_000527"
     CDS             complement(32431..33870)
                     /gene="gltX"
                     /locus_tag="PXA71_000527"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDL5104671.1"
                     /translation="MKIETLFPLDPNVKVRTRFAPSPTGYLHVGGARTALYSWLYAKH
                     NDGEFVLRIEDTDLERSTPEATAAILEGMEWLDLAWEHGPYFQTKRFDRYNQVIDQML
                     EAGTAYRCYCSKERLDEVRAEQEANKEKAKYDQHCLHNPQNDPSQPHVVRFKNPTEGS
                     VVFDDAVRGRIEIANSELDDLIIRRTDGSPTYNFCVVVDDWDMGITHVVRGEDHINNT
                     PRQINILKALGAPIPTYAHVSMINGDDGQKLSKRHGAVSVMQYRDDGYLPEALINYLV
                     RLGWGHGDQEIFSRDEMIELFDIHSVSKSASAFNTEKLQWLNQHYIRSLAPSYVAKHL
                     EWHMQTQGIDFTSGPKLEEIIPVLGERCKTLKELAESSRYFYQEFKAYDEKAAAKNFK
                     AEAVAPLAKLLEKLTACNDWTVENIHEAMNQTAAELEIGMGKVGMPFRLAVTGSGQSP
                     SMDITAKLVGKERTLARLQKAIEFIQANS"
     gene            34045..34120
                     /locus_tag="PXA71_000528"
     tRNA            34045..34120
                     /locus_tag="PXA71_000528"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:34078..34080,aa:Val,seq:tac)
     gene            34169..34244
                     /locus_tag="PXA71_000529"
     tRNA            34169..34244
                     /locus_tag="PXA71_000529"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:34202..34204,aa:Val,seq:tac)
     gene            34297..34372
                     /locus_tag="PXA71_000530"
     tRNA            34297..34372
                     /locus_tag="PXA71_000530"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:34330..34332,aa:Val,seq:tac)
BASE COUNT        10006 a         6794 c         7701 g         9918 t
ORIGIN      
        1 cgtgtttcga tagctacaga gaaactaaaa agcactattt gctttcaatc gcttttttca
       61 tttcttcaac ttttgtttct gtctcaactt tcacttctgc tgccttctca gctactgcct
      121 ttttagcttc ttctgcttta tctgctgttg cttgagtcgc atcacttgct gctgctttta
      181 gttcttccac tttagcttca gttgtggctt ttaactcagc agctttctct gctactgcct
      241 tttttgcctc ttctgtttta tctgttgttg cttgagctgc atcatttgct gctgctttta
      301 gttcttccac tttagcttca gttgtggttt ttaactcagt ggctttctct gccactgcct
      361 tttttgcctc ttctgtttta tctgctgttg cttgagctgc atcatttgct gccgctttca
      421 actcttcaac cttcgcttca gtagccgatt taacttctgc agctttttca gctacagctt
      481 cttttacttc aaccgctttg tctgtagttg attgcgcggc ttcttttgcc tgatcacaag
      541 cagcaagtgc catagttgta cctaacacta ataatgataa aaatgatttt ttcataccga
      601 gttccttaaa taaactaaaa ataacgcact ttgtaataaa gtgcgtttac ttaggcagaa
      661 aaattgatag aaagttcata ctttgataaa aaaatgccta ttagttataa ctaataggca
      721 tttaaaccaa ttaattgtac ttaaccattg gttgaacgag gcgctgactg cacttggctc
      781 actgcgctgg tatatccgcc aaaccctttg ccatagaaat agtatttaga gttttgccat
      841 tggctaattt cgactacttc aagcttgtca cttggtgcag aagcaatggt catagcggct
      901 tgggtatgct caacacgaga gaatgtacct aatctgccgt taaatcgata atcgctttcg
      961 taagttgatt ttggcacttc aatcgggtta gtaacctctt ccacaatcgc tggtgcaacc
     1021 gttgcttgcg attggaattt actgactcgc tcatttttct ctttaactaa atcacgttca
     1081 gaatgctgag caacaacact accaaatgga gcaatatgct cttttacctc tactggtttt
     1141 acgtcttcag aagcaacttt ttcttctttc ggtttggaaa gctgttcttg cttctcctta
     1201 accaaatcac ggttagttgc ttgtgctaca aagccaccta gcggactaac tgtatgaagc
     1261 ttcttctctt ctgatttttt ctctgtctca acaagctgat tttcttgctg ttcaagcatt
     1321 tgatcaacag ataagaatga tgctttttcc tctactttga cagtagaggt aacctgaacc
     1381 caaactttac cgctcgcaag ctcaggcgaa gcaacagctg aagttagagg cataggagaa
     1441 ataacctgat tgcgttgatt ttcacgacga cgctgattgc ccacacgcaa atggcgaggt
     1501 aaacggcgtt ggcggttatt ttcacgtcct tcgttcgttg tttctacctc aggagctgtt
     1561 tcaacaggta cttcttgggt tgcaagcggt tgaatttgtt gatttttttg cacattttca
     1621 acttgttttg ccaccgtttc ctcaacagca ggtgttagat tttccacttc tacttcttgt
     1681 gtttcgatac gcactttttt acgtagatca cggcgttggc gacgttcagt ttgaacctca
     1741 cgggagttgc tacgactctc ttgctcggtt acaccggaaa cttcttccac taccgctcgg
     1801 cgtgcttttt tctcgctacg catcggtttt tcttccgctg gagtagtttg agcttgcgga
     1861 gttttacgct cttgattttc cgctttagca ttacggttcg ggcgttcacg gcgttggcga
     1921 cgctcacgct gattgcgtgc tttcggcttc ggtttttctt ccactttttc ttcactaaac
     1981 cagcctttaa tggtcgcaat taagcggctt aacagcgatg gttttggtgg ttcggttggt
     2041 gttggcgaag gttggagatt cagctccgag ctttgtaaca ctgactctac cgtaatcacc
     2101 ggctcgttac gggtaaccag cacatcttct tgatggtgat gatgtgggtg ttcttcttca
     2161 tgacgagctt cgtaatgctt ggttaaatcg tagcttaacg ttggagtaat ttcattttca
     2221 cgcaggcgat atacgctgaa atgcggcgtt tccatacttt cagacggtac tacaacaatt
     2281 tgtacatcgt ggcgtttttc aatgctggaa atcgctttac gtttttcgtt gagtaagtag
     2341 ctggcgattt gcaccggcac aatggtgtga acctgtgcag tgttttcttt gattgcctct
     2401 tcttctaata aacgtaagat tgacagtgcg attgattcat tatcacgtac tttaccagtt
     2461 ccctgacagc gagggcagat atgcgatgaa gcctcactta atgatgggct taaacgctga
     2521 cggctcattt ctaacaaacc gaaacgggaa atacgggcaa attggattct cgcacggtct
     2581 tggcgtgtcg cctcacgaat acggttttct acttcacgtt ggtggcgaac cggtgtcata
     2641 tcgataaagt cgatcacaat caaaccacct aagtcacgca aacgtaactg acgggcaatt
     2701 tcatctgccg cttctaagtt ggtgttaaga gcggtttctt caatatcgcc gccacgggtt
     2761 gaacgtgagg agttaatatc aattgctgtt aaggcttctg ttacatcaat aacgatagag
     2821 ccaccggaag gtaaacgcac ttcacgttgg aatgccgatt cgatttgcga ttcaatttga
     2881 tagtggctga atagtggtac ttcgccttcg tataatttca cacggttgat gaaatccggg
     2941 cgaacaaggc gaatgtggtt tttggctttc tcgaacactt ttttgttgtc gattaagatt
     3001 tcgccaatat cacggcgtag atagtcacga attgcacgca caatcacgtc actttcttgg
     3061 tgaattaaga acggagctgg gcgagattcc gccgcttttt taatcgcttc ccagtggtgt
     3121 aacaagactt ttaagtccca ttgtaactct tccggcgatt tgccgacacc ggcggtacga
     3181 acgattaagc ccacgtcttc cggtacatct aagcagtcta aagcctcttt gagttctaaa
     3241 cgctcatcac cttcaatacg gcgggaaata ccaccggcac gagggttgtt cggcattaag
     3301 actaagtaac tgcccgcaag cgaaataaag gtggttaagg ctgctccttt gttaccacgc
     3361 tcttctttgc tgacttgaac aatcacttct tgcccttctt gaataatatc tttgatattc
     3421 gggcgaccgt taaacacata gtctgacggg aagtattctc gggaaatttc ttttaaaggt
     3481 aggaagccgt ggcgttctgc accgtaatct acgaatgcag cttcaaggct tggttcgaca
     3541 cgggtaattt tacccttgta gatattggat tttttctgtt cgtgacccgg gctttcaatg
     3601 tccaagtcaa ataagcgttg cccatcaacg agggcaacac gcaactcttc tttttgagtt
     3661 gcattgatta acattctttt cattgtgttt tctcattatt ttgtttttgt cttacacggt
     3721 cattttgacc cattaataag ggaatggatt taatgtctat ctcacgactg tcttcattcc
     3781 cgatagtgca ttgatggttg tcttacgttt actttgtctt gtcttaaaga aactgcaaaa
     3841 tcaatcactt aaggcttgtt tatctctatt acaagcggtt atttttgctt tattttttgc
     3901 aattttctat tgctttttca agccaaaaat aacgagtcat tatcgcattt taaccctgaa
     3961 aaaggcaagg taattgttgt atggtagctg ttatttgttg tggagatgaa tataatgaaa
     4021 atgaatgggg tgataaggaa aaataatgag atttagtgtg agtgctggag ataagcgtga
     4081 aatccaagcg gttaaatttg caaaaaaaga gctaaattta accgcttgta aagcgaatat
     4141 tatgcttttg ccgtcatttt tttcactgct tcttcagtgg tccagaggtc atttgcgata
     4201 atacggtagt tggttaatgc tgcaaggtag ccgtcacctt caggaatacg aggccctgcg
     4261 gttgcatctt tcaccactgt tacttcaaaa ccttgttcga ttaattcacg caagtgtgaa
     4321 tcaatacata agttggcagc cataccggct aaaattactt ggtcgatttt acgtttgcgt
     4381 aattgcaaca ctaagtcatt ggtttccggt ccaaagattt tgtgtggaga ggtaatcact
     4441 gttttgccat caaaaatgta tggtttgtac tcaggcataa agtctgcacc tgaattttca
     4501 aagccttcca tggtgtattg accttttctc gcaaacattc cgctgtcgtg cataaagtgt
     4561 tcacccggtg aaccaaattc ccatttgtga tcagtcgggt aatagtagtg tggcgaaaca
     4621 aaggttggca tatcgactgc ttttgctgct ttaaataagc tttcaatgtt agctacagtg
     4681 ttgttttctt taattgagtc acctaacacg ccccacatca cgcctttcgg gcctaggaag
     4741 tcaatttgtg gatcaactac cactaatgcc acacgttttg gatcaatggt cattccatgg
     4801 cgttttaaac cgtattgttc cggctcggca taaggtgatt tttctgcact ggcttgtttt
     4861 gcatttgctg ttgatgcaat acctaatgca cctaatacac tggctgccat tgcaatacga
     4921 gagccgtggt taagggcttg acggcgttct tggttgattt cttcaaattg ttcctgtgac
     4981 atcattttat cctcattaat agatatacaa attgtaatga taacttgcgt taccgaacgg
     5041 gttgctatta tagtgatcgc atttctcctg ttttaaccgt tcgtctcaat tctttaccca
     5101 aggagcttaa tgtggatagt ttgactcatc tttttaccca atttcagttt cgcacggatt
     5161 tatttcatct aggtcagtta tgccaaatcg ggagttttaa tgaagagaat aaaggctatt
     5221 tacatttcgt tcgtcaggga cgttttattt taaatcaggc tgccgaacgc ccagcgatta
     5281 ttttttcacc aaccaatatt ttgcatagtt tgcacccgtt agatgatagt gggttagata
     5341 tattttgtat taattttgat tttggcaaag ggattcgcaa cccattaact cataccttgc
     5401 acaatattgt gatcttagag ttggcacagt atccggaatt gggggtatta gccgatcaaa
     5461 tttttagtga agtgaatcag aaagggtgtg gttatcaggc aatgattcat catttatgtg
     5521 cctattttac cttgaaagtt gcccgccaat gtttggaaaa agggtatatt caaacaggtt
     5581 tgttaaaagg cttggcagat aagcaactgg ggaaagtgct gttagctatt cacaatgcac
     5641 cagagcgaga ttggaatgta gaggagttgg caaatgtggc attaatgtct cgctcacgct
     5701 ttgctgctta ttttaaacaa acgatggggg tttcaccgat ggattatctc actaactggc
     5761 gactagcggt tgcccagcat ttattacaaa aagggatacc agtagcattg gtggcagagc
     5821 aagtcggtta tagccataat gctgctctca gccgtgtctt tatgcgggaa ttagggcttt
     5881 cgcctaccga gtggctggct caaaataaag agtcgtaacc tgatgagaaa caaatagccg
     5941 aatggtaaaa atgtcaaaaa atttaaccgc ttgttatgtt gcacaagcgg ttaaatgttg
     6001 ccttaaatgc caagagaatc ccaaatctca tcaatgcgtt tcaccacatt gtcatctttt
     6061 tcgatgggtg ttccccattc tcgggtggtt tcacccgccc atttattggt ggcatcaatc
     6121 cccatttttg agcctaaccc tgcaattggc gaggcaaaat cgagataatc tatcggcgtg
     6181 tgttcaatca gtgtcgtatc tcgagccggg tcacaacggg tggtgatcgc ccaaattaca
     6241 tctttccaat ctcgagcgtt cacatcgtca tcgcacacaa tcacaaactt ggtgtacata
     6301 aattgacgca ggaacgacca aactcccatc atcacccgtt tagcgtgtcc ggcatattgt
     6361 tttttcatcg tcactaccgc taaacggtaa gaacagcctt caggtggcaa gtagaaatcg
     6421 acaatttccg gaaactgttt ttgcaaaatc ggaataaaga cttcattcaa tgcttcacct
     6481 aatactgccg gttcatcagg tggtctgcca gtgtaggtag aatgataaat cgcatctttt
     6541 cgcatcgtaa tatgggtaac ggtaaatacc ggaaaatact cttgctcgtt gtagtagccg
     6601 gtgtggtcgc cataagggcc ttccaatgcg gtttcttcca gatcgatata gccctccagc
     6661 acaatttcgc tacttgccgg cacttctaac tcattggaaa tagatttgac cacttcggtt
     6721 ttatgccctc gcaacagccc tgcgaacgca tattccgaaa gcgtatccgg cacaggggtg
     6781 actgccgcta aaatagtggc tggatctgca ccaatcgcaa ccgacaccag aaacggttta
     6841 cccgggtttt cggctttcca ctcttggaag tctaacgcac cgccacggtg ggaaagccaa
     6901 cgcataatca gtttgttttt gccgataagt tgctgacgat aaatgcctaa attctggcgt
     6961 tttttgtaag gcccttgcgt aatcgtcagc ccccaagtga ccagtggagc gacatcgccc
     7021 ggccaacagt gcataatcgg taatttgtag agatcaacct catcacccga aatcaccact
     7081 tgctgacaat cggctttgct cagtacctta ggcggcatat ttaaaatttg cttccattgt
     7141 ggcagttgcc cgatcaaatc tttaaaccct ttcggtggtt caggctcttt taaaaaggca
     7201 agtaacttgc ccagctcacg cagagctttg gtatcttctt gccccattcc cagagctacc
     7261 cgtttgggcg tgccgaataa attacacaac accgacattt gatagccttt cgggttttca
     7321 aacagtaatg ccggcccgcc tttgcgtaag gtgcggtcgg cgatttctgt catttctaaa
     7381 taaggatcga tttcttgctg aatacggact aattcaccct gagactcaag gaaatcgaga
     7441 aattcacgga gatttttata cttcatagcg gtcatatttt tcgatttttt tgcaagtata
     7501 tagaaaaacg taaatgaaaa atacccataa aaaatttata gaaattttgt tttattttgt
     7561 tagaatagct cggttcaaat taaatgccat aaggggaatt ttatgtttaa aagaacatta
     7621 atcggtctag ccgtgttagg tgcaagtgtt gctcaagcgg atgtattaac cagtattaag
     7681 cctttaggct ttattgccag tgccattacc gaaggggtaa ctgaaactaa agtattatta
     7741 ccggtaactg cctctccaca cgattacagc ttaaaacctt cagatgtgac tcaattacaa
     7801 tctgctcaat tagtggtttg ggtgggtgac ggcttggaag gctttttaga aaaaagtatt
     7861 gaaaaactgc cgagagaaaa agtattaacc cttgaagatg ttgatgcgat tgatgatatt
     7921 gtcgataaag caagcaaaaa agaagataaa gacgatgatc acgatcataa acatgaacat
     7981 aagcacgaac acaagcacga gcataaacac gaagggcata atcacgaagg acataaccac
     8041 gatcatcacg gacatagcca cgatgaagat tggcatattt ggctctcaag cgaggcaagt
     8101 gagctggcag cagagcaaat tgcggcacgt ttaagcgaac aaatgcctga acacaaagcg
     8161 aaaattgcgg aaaatcttgc aaaatttaaa gcaaatctaa ccgctaaaaa agccgaaatt
     8221 gcgaaacaat tagagccggt aaaagccaaa ggttactaca cattccacga tgcttacggc
     8281 tattttgaaa gagaatatgg tttaaattca ttgggttcat ttaccattaa cccaactgtt
     8341 gccccgggtg caaaaacact tacagcaatc aagaaaaaca ttgcgaaaaa caaagcacaa
     8401 tgtttatttg ccgagccgca atttacgccg aaagtaattg aaaccttagc aaaagaaact
     8461 aaagtaaatg ttggccaatt agacccactc ggtgcaaaag ttcagttaag tgcgactgct
     8521 taccctgaat ttttacaagt tttggctgac gaatttagcc aatgtttaac aaaataagtt
     8581 aaaaatcccc catttaaata taaatggggg attttgcgat tacatcactt aagctttttt
     8641 taagaattct gatttcaaca taattttacc gcaatcgaca ttatggtcac cttgagctaa
     8701 acggattcct ttgaattttg tacctttttt cagtacttca gacgagcctt ttaattttaa
     8761 atctttgatt aataatacat cgtccccgtc agataataaa ttgccattac tgtcttttac
     8821 aattagcaca tcatcatctt gatccgtttc ttcgcccgtc cattcatacg cacaatccgg
     8881 gcaaacaaat tgaattgagt cgtggtaagt attttcgctt ttacattcag ggcaggttgg
     8941 gtaaatcatt ttaattcctc aaattaataa agaaccagat tatataccga aatccagcaa
     9001 aacgctaagc ggtcatattt tgccgatttt ttaccaatcg agctaaaagt cagttagaat
     9061 agccttaatt acacaaaaag gaggatacta tgatagtcga tccgaattat cagcaagaat
     9121 tagaaaaata cgaaaatccg gtaccaagcc gagagtttat tttaaataca attcgtgaac
     9181 ataacgcccc aatgagccgt gatgaattat tgtcggcttt tcatattgac gatgaagaac
     9241 gaatggaagg cattcgccgc cgtctgcgtg caatggaaaa tgacggtgaa ttggtgttca
     9301 ccaaaggcaa acgctatgcg ttgccggaaa aaatggattt aatcaaaggt acagttatcg
     9361 gccatcgtga cggttacggt tttttgcaag tggaaggaca cgaaaaaggg gcgactaaaa
     9421 gcgaagattg gtttattccc aacgcccaaa tggtaaaggt aatgcacggt gactttgtgc
     9481 tggcacaacc aaacggcaca gaccgcagag gtcggaaaga agtccgcatt gtgcgagtgt
     9541 tggaggcccg taagaaacag attgtcgggc gttttttcct tgaaagcggt atcggttttg
     9601 ttgtgcctga tgacagccgc gttaaccaag atattctcat tccggatgaa caccgtatgg
     9661 gggcgagaat ggggcaagtt gtggtggtgg aattacagga aagaaaagcg agttttagcc
     9721 gcccggtggg aatcattact gaaattctag gcgataattt agcgccggga atggaaattg
     9781 aaattgccct acgcaatcac gatattccgc acatttggcc ggaaggggta gaaaaacaaa
     9841 tccgccaatt tagtagcgaa gaagtgccgg aagaagccaa gcaagggcgg gtggatttgc
     9901 gagatctgcc actgattacc attgacggcg aagatgcccg agatttcgat gatgctgtat
     9961 ttgccaaaaa agagggcaac ggctggcggt tatgggtggc gattgccgat gtaagttatt
    10021 atgttcgccc aaaaaccgca ttagatttgg aagccctaaa tcgtggtaac tcggtctatt
    10081 tcccgaatcg ggttgtgcca atgttgccgg aagtgctttc caatggcttg tgttcactca
    10141 atccacaggt tgacaggctc tgcttggtgg cggaaatgtc ggtttccagc aaaggggaat
    10201 tacaagatta tcaattctac gaagcggtaa tgaactctca cgcccgttta acttacacta
    10261 aagtgtggaa aatgttggaa ggtgatgaag ccttgcgtga acgctatgct ccattagtgc
    10321 cgcatattga agaactctat gcaatgttcc aaaccttaat gaaagctcgc cataaacgag
    10381 gggcgattga atttgaaacc attgaaaatc aatttatttt caatccgcaa gggcgaattg
    10441 agcgaattga gccgttaatc cgcaacgatg ctcataaatt gattgaagaa tgtatgattt
    10501 tagccaatat tgctgccgct cgttttgtgg aaaaagcgaa cgaaccggcg ttatatcgga
    10561 ttcacgataa gccgagtgaa gaaaaattgc tcagttttaa atcctttgtg cgtgagtgtg
    10621 gcttaacctg ggacgtaggc ttagatccaa ccccaaaaga ttacggtgta ctactggagc
    10681 aaattgccga acgtgccgat aaagagttga ttcaaacgat gttgctccgc tcgctgaaac
    10741 aagcagtgta tgcggcggat aatatcgggc atttcggctt ggcattaacc gaatatgctc
    10801 attttacctc gccgattcgc cgttacccgg atttactgtt acaccgtgca attaaatatc
    10861 tgatcgaaaa aggcaaaggc aacactcgct actataccga tggcggtggt tatcactaca
    10921 agttagatga tatggacgaa ttcggcgata aatgttctgc caccgaacgc cgagctgatg
    10981 aggcaacccg agaagtggca gattggctga aatgcgaatt tatgcaagat catcttggcg
    11041 aagagtttga tggcgtgatt tcgagtgtta ccggctttgg cttatttgta aaactcaatg
    11101 agcttttaat tgacggattg gttcatattt caacgctgga taatgattat taccactatg
    11161 atgcggaccg acaacgttta atcggtggca gtgggatcat ctatcgttta ggcgatgcag
    11221 ttagagtaaa agtaatcaat gtgaatttag acgagaaaaa aattgatttt gagttactca
    11281 ccggtaataa gaaaaccggc aaaaccgcca agaaaaaagc aaaagcgaca gaggttcctg
    11341 ttttcaaaga gcctaaaacg gtaaaaaaag ccaaaaaagt cgctgagaaa aaaccggcaa
    11401 aatctgcaaa aaaacggaca aaaacgaccg ctagtaaatc aaggaaaaaa tagcaaatgg
    11461 attacaaaaa acaaatttta ttcagccttt tatttgcttt agtaattgca ataataagct
    11521 attttttgtt tacctatatc ccgtttgatt gtagcgatct gagcaaactc aacgattcac
    11581 aacgtttaga gtgccgaact gccgaatttc tgggcgttta ttactggctg ccgcacacta
    11641 ccacgctgtt tttcggctcg gtgttattat attgggcggt ttatggcatg atttcattag
    11701 tgcaagcagt gctcaaacgc taacaagcag ttttgttttt gcaaaaagtt gcaaatctca
    11761 tctgaataat ccttccaaga tcaaaggtct atcaaaaaag atagaccttt attgtgtaaa
    11821 taaactaaaa ctccttgata gatgtatcac atatctataa aattccagca attaagtggg
    11881 aaaaagtggt aaattgtgga acttttcctt aaatttaacc tcatttaaaa aggtaaatca
    11941 gtaaaatgtt tcgtggtgca agttcaatca gcattgatag caaagggcgg atcgctattc
    12001 cgacccgtta tcgtgccgag ctattggaaa aacatcacgg gatcttagtt tgcactgtgg
    12061 atatccgcca gccttgtttg ttgctttacc cacttcacga atgggaaatg gttgaacaga
    12121 aattgttggc actatctaat tttgaccctg ttcaacgccg tattcagcga gtaatgcaag
    12181 gctttgctac cgaatgtgaa atggattcgg cagggcgaat actgcttagc cctacacttc
    12241 gccaacacgc acaattagag caacaaatta tgctggttgg acaattaaac aaatttgaaa
    12301 tttggcaaga taaacaatgg caagcacaaa ttgccgaaga tcttgctttt ggcagttcgg
    12361 cagaaatttt agactgcgaa gcattgaaaa acctgtctct ctagtaattg gaaattgaga
    12421 tgagcgagaa cccaaaacat attacagtat tattgcacga agcggttgac ggcttggcaa
    12481 ttaagcctaa cggtatctat attgacggta ctttcgggcg tggcgggcat tctcgcttga
    12541 ttttatccaa actgggcgaa aatgggcgat taatcgcaac tgatcgtgac ccacgagcga
    12601 tagccgaagc tcaaacgatt agtgaccctc gttttcaaat tgaacatacg gcattttctg
    12661 ccattcccga actgtgtgaa cgaatggggt tggtgggcaa aattgacggt attttattgg
    12721 atttaggtgt gtcttccccg cagcttgacg aagccgaacg aggctttagt tttatgcgtg
    12781 acgggccgct tgatatgcga atggatacca ccaaaggctt atcggcagcc gagtggcttg
    12841 cccaagtttc ggcagaagat ttagcttggg tattgaaaga atttggcgaa gagcgttttg
    12901 ccaaacggat tgcacaagcg gtcgtttctt acaataaatc tgcaaatgaa aaaatcagcc
    12961 gcactttgca gcttgcgcaa attattgcgg atgcggtgcc gtttaaagat aagcacaaac
    13021 accctgcaac ccgttcgttc caagcaattc gcatttttat caatggtgaa ttagacgagc
    13081 tggaaaaagc tttaaattcc gcattaacgg tgttagcccc tgaagggcgt ttgtcgatta
    13141 tcagctttca ttctctagaa gaccgaatgg tgaaacagtt tgtgcgtaag catagtaaag
    13201 gaatggacgt accccgtggt ttaccgattt tagaagcaga gctaaccaaa aatattccgc
    13261 tgaaaaccat tggcaaagcg attatgccga gcgaagccga aattgaagca aatgcccgct
    13321 cacgcagtgc ggtattgcgg attgccgaaa aacgctaaca gtaaataggg aagaatatgt
    13381 cgaacgaacg ttatccgtta catcaaatca tcattgatga tatctttagc cataacaaag
    13441 tggctctttt attgttgatt ggtgtagtga tttcagcagt ggctacgatt tggataaccc
    13501 accagactcg tttatcggtg agcgaacaag ggcaactgat tcaagcaaac caaaagttgg
    13561 aaagccaata tactaatctg caattagaag aaaacagcag aagcagtcgg gcaagagttg
    13621 atgccgccgc taaatcgttc ggattacagc cgattaaaaa agagcaagaa attattttag
    13681 ttgaataaaa aatggttaaa tcagttaaat taaaacgtaa gcaagaagcc cctgtcgcaa
    13741 aagcagagcc tcaacaagca gaaggtaaaa aaacaccgag ttttttacct actcgcttta
    13801 gagtggttgt gttttttatg ctattaatgg ttggtggctt actagcacaa accgcctata
    13861 ttcagctttt tgactctgaa agattaatta aagaggctaa taaccgctca cttcgtacta
    13921 aagaactcca atttacccgt ggacgtattt tagatcgtaa cgggcgtttt ctctctatta
    13981 gtgtgccaat gtactcatta acacttgacc cgagagaata ctttgatact aagctgcgtc
    14041 gttctaacga aagctggcgt gccttagcga ttgaaatgga aacatcaaaa ggtaaaattg
    14101 aggcaaacgt taataaattt attgaaaaga aaaatttttc aaaagaaaaa gtagattttg
    14161 atccacgttc tattttaaat actaaaagtg aaggttattg gactcagctt gcccaagtta
    14221 caggtttgga ttacaacagt ttaatagaaa aagtacggaa taaccctagc tcggtttttt
    14281 tacgtttaga taacgaaaat ttagtaagag aacgccagaa attccaagcg ttaagcaaag
    14341 aaatcggccg ttcctataat gacataatgg acgagcttta tagcaaaaac cgccagcgat
    14401 tcctttactt atcccgtcat caatctgaag cgatcagcga atatgcaaaa gaactagata
    14461 ttgatgcatt agtgattaaa gtcgaatcac gccgttttta cccgctggca gaagaatctt
    14521 cacagttgat cggttttact gataaagatg atatgcacgg ttcggaaggg ctggagcgta
    14581 gttttgattc cttacttatc ggcaaaaacg gtaaacaaat tatccgaaaa gatgccaaag
    14641 gcaatattgt ggaaaatatc cgttcggaga aacagtacga tccgcaagat gttatgttaa
    14701 gcattgatga agaattgcag tctatggtgt acggtgaaat caaaaaagcg gtacaggaaa
    14761 ataatgcgga atcaggcact gcggttttgg ttgatgtgca aaccggcgaa attttggcaa
    14821 tggcaaatgc cccttcattc aacccaaaca aacgggatag ttttaaacct gaattaatgc
    14881 gtaaccgtgc tattaccgac acttttgaac cgggttcaac ggtgaaacct tttaccgtat
    14941 taaccgcatt acaaaatggg gtaacttatc gtgatgaagt tattggcact cgcccatttg
    15001 tcgtcaatgg acatacaatt aaagacgttg ctccaaggga cagccttacg cttaccggca
    15061 tcttgcaaaa atccagtaac atcggggtca gtaaattagc cctcagaatg ccggcaaatg
    15121 cgttagtgga tacttacacg aaagtcggtt tcggtaaaga caccggttta ggcttgggtg
    15181 aacaacgagg tacgaacggt gatcgcaaac gttgggcgga tattgaacgt gctacccttt
    15241 cctatggata cggtttaaat gtgaccccat tacaacttgc ccgtgcttat gcgactttag
    15301 gaagtttcgg gctgtatcgc ccactttcga ttaccaaggt cgatccgccg gtgattggcg
    15361 aacgggtgct accggaaaaa accacccgag atgtcgtgca tatgatggaa agcgttgcgg
    15421 ctaaaggcga aggcggacac cgtgcagcgg tggacggcta ccgtgtagcc atcaaaaccg
    15481 gtacagcacg caaattagaa aaaggtaaat atgttgaaaa atatattgct tataccgcag
    15541 ggcttgcccc ggcaagcgat cctcgctttg cattagtggt attaatcaac gaacctaaag
    15601 caggcaacta ttatggtggc tttgtttctg caccactgtt ctcacgcatt atgggttaca
    15661 ccttaaaaca acgtaatatt aagccggata acttaacgga aaatacccaa agtgccgtgc
    15721 gtgaaattaa attagaacgc cctatcaatt aaggttagct atgaaacgtt tactcccttt
    15781 tctgacagaa cttgatgctt gggtggaaga actcaccgag ctaaaacaaa tgacacttga
    15841 tagtcgccaa gttcaagccg gtgatctctt tgttgcttta aaaggacatc aagtcgatgg
    15901 cagaaaattt attccgaatg cgatagaaca aggagcagca attattttgg ctgaggctga
    15961 tgaagatcaa ccggaaattg agcttgatcc gaaatttgca aaatttaacc tagatcgcac
    16021 cgcttgttgc aaggttgtct ctgttccacg tctgccaaaa ttgctctctg aaattgcagg
    16081 agctctttac cataacccgt cacacaagct gactttagcc ggcattaccg gcacgaacgg
    16141 taaaacgact actgctcaat tattagcaca atggcataat ttattgggtg ggaaatcggc
    16201 agtaatgggt actatcggca acggtttgta cggacaagtg caagaagcgg taaataccac
    16261 cggctctgcc attgaaattc agcataatct tgcgaacttt gttgaacttg gagcggattt
    16321 ttgtgcgatg gaagtcagct ctcacggttt ggctcaattt agagccgaag ccttggattt
    16381 tgatttagcg atctttacga atttaagccg agatcacctt gattaccaca acacgatgga
    16441 agagtatgcc caagccaaat tccgtctctt caacgaatta agcaccaaag ctcaagtaat
    16501 taacgccgat gatgaaatcg ggcgtgaatg gctgacacaa ttaccaaatg cagttgcggt
    16561 aagcaccgat ccgaagtttg caggcaacca ccaatttgtc aaagccactg cggtaaaatt
    16621 taccctacaa ggggcaagta ttgcgtttga atcaagttgg ggcaatggcg agttacatag
    16681 ccgtttaatc ggggctttca atgtaaataa tctgcttacc gcctttgccg gacttttagc
    16741 tcttggcttt gatattcaag aactggttaa aaccgccccg aatttagttg gcgtagcagg
    16801 tcgaatggaa tgcattaccg ctccaaataa gccaatggta attgtggact atgctcacac
    16861 ccctgatgct cttgaaaaag ccctacaagc ggctcgttta cattgcgaag gcgaactttg
    16921 gtgcattttc ggctgtggtg gagaccgtga cgccggcaaa cgcccattaa tggcgacgat
    16981 tgccgagaaa ttaaccgata aagtgattgc tacagacgac aaccctcgca ccgaagataa
    17041 tcaaaagatt atggcagata ttgtgaaagg ttttagtaaa ccccaacaaa ttatccacaa
    17101 tcgtgaagag gcaattaaaa ccgccattga gcaagctaaa gccacagatg tgattctaat
    17161 cgcaggcaaa ggtcacgaag attatcagat tattggcaca gagaagttac atttttcgga
    17221 tcaggaaacg gcaaggaaat atctgtttta atgtcacttt ctttgcacaa gcaaagaaaa
    17281 gtgacagtga caaatacaaa atgctcgtaa ttaattttat aaagaaaaag ataaatcaat
    17341 gataaaacta accacccaac aaatcgctga aatcctaaat gccaaattga tcggcaatgg
    17401 cgaaactgtg gtagaaacca ccagcaccga cacccgacaa gcggttgaaa acggcttatt
    17461 ttttgcatta aagggcgaga actttgatgc tcatcactat cttcaaaatg cagtcgcaca
    17521 aggttgtgta gcggttgtgg ttgagcgtga gtgtgaaatt gatgtaccac aacttgtggt
    17581 ggcagatacc cgtttggcat tgggggaatt ggcgaaatgg ttaaaagcta agctgaaccc
    17641 gaaaacggta gcgatgacag gttcttccgg caaaacaacc gtcaaagaga tgacggcaaa
    17701 aattctgcaa aaaatgaccg cttgcgaaca ggaagtgctt tatacttttg gtaacttaaa
    17761 caatgactta ggtgtaccga tgaccttgct tcgcttaacc gaacagcata aatatgcggt
    17821 cattgagctg ggggcaaatc atatcggtga aatcgcttat accaccgcta tcgctcagcc
    17881 tgatgcctgc ttggtgaata atgtggctgc ggcgcattta gaggggtttg gttcattagc
    17941 aggcgtggca caagccaagg gcgaaattta tcgtggcttg aaagaaaatg gcaaagcgat
    18001 tgtcaattta gctttttatt atccgcaatg gcaaaaagag attggctcac gggaaatgca
    18061 atctttctct tatatcgggt cagattcgga ttcttacgca gattactggg cggaagatgt
    18121 agaactgcat ttaagcggtt cacgctttac gctacatacc ccacagggcg aaattgctat
    18181 tgatctgcct tatttgggca aacataacgt gagcaatgcc ttagcggcaa cttcgctggc
    18241 gatgtctgtt ggggcaacgc tagaagcagt taaggcaggg cttgagcagc gttcaatggt
    18301 aaaagggcgt ttgtatccgg tgcaaattaa cgaccactgt ttgtttattg atgacactta
    18361 caacgccaat gtggattcaa tgaaatcggc gatttctgtt ttggaaaatt atccggctta
    18421 tcgtattttt gcagtgggtg atatggcgga attgggtgaa gaaagtagca aatgccacca
    18481 agaagtagcg gattttgcca aaaatgcagc attagattta atcgtgagct ttggaaaaga
    18541 aagtgcggta atcagccaac aggcagaaca tcattttacc gataaacagc aaatggttga
    18601 tttcctactg ccgattattt tgcaaaaaat cgaacaaaaa caaccgcttg tattattggc
    18661 aaaaggctct cgtagccaga aaatggaaac cgtgatttcc gaattgtgta aaccgtttaa
    18721 cctaaatttc taattatttt taaggactaa gcaatgttag tttggcttgc agaactattg
    18781 gttcaatata acacagcgtt taacgttgtc tcttatatta ctttccgtgc cattatggcg
    18841 ttattaactg caatgggaat cgggctttgg atcgggccga aagtaattcg ccgtttgcag
    18901 atcttaaaat ttggtcagga agtgcgtaat gacggaccgg aaagccattt caaaaaacgt
    18961 ggtacgccaa caatgggcgg agtgatgatt ctcgcagcga ttggggtgag tacattgctt
    19021 tgggcagatc tgcgtaattc ctatgtttgg ttcacgctgt ttgtgctatt tggctacggt
    19081 gcagtgggct ttgttgatga ttatcgtaag atctctcgta aaaataccga tggtttgatt
    19141 gcccgttgga aatatttttg gttatctgct atcgcattag tggcggtgtt tggtatgtat
    19201 gcggtgggta aagataccgc tgcaacacaa ttagtcgtgc cgttttttaa agatgtgatg
    19261 ccgcaactcg gtttatttta tattgtgtta tcctatttcg tgattgtcgg caccagtaat
    19321 gcggtaaacc taacggacgg cttagacggg cttgcgattg tgccaactat tatggtcgca
    19381 tctgcctttg cgttaattgc gtgggcaacc ggtaacttta attttgcaca atatttacat
    19441 attcctttta ttccaaatgc cggtgaattg gttattttat gtactgcgat tgtgggagca
    19501 ggtttagggt tcttatggta taacacctac cctgcacagg tgtttatggg cgatgttggc
    19561 tcactttcgc tcggcggtgc attaggcgtg attgcagtat tagttcgcca agaattatta
    19621 ttggtggtaa tgggcggtgt atttgtggtt gaagccctct cggtgatttt acaagtaggt
    19681 tcatacaaat tacgccaaaa acgtattttc cgaatggctc caattcacca ccattttgaa
    19741 ctcaaaggct ggtctgaacc acgggttatc gtgcgtttct ggattatcac gctaatgctg
    19801 gttttagtcg gcttagtaac attgaaatta cgttaattga ttgaataagg tgcattgaga
    19861 taatgtacct tatgttattt ttaaattaca gaataaatta tgcaaaaaca atacgaaaac
    19921 aaaaccgtta ctattatcgg cttaggtaca acagggttat cttgtgtgga tttctttaag
    19981 aaaaaaaatg ccaatatcca agtgattgac acccgagcaa acccagccgg agcggataaa
    20041 ttggacgtaa ctattccgtt gcataccggt gggttaaaca gtgaatggtt gctgaaatct
    20101 gatcttattg taattagccc aggtttagcc gttgccacac ctgaaattca gcaagcgatt
    20161 caagctggtg ttgaaatagt cggtgatgtt gaactgtttt gtcgggaagc gaaagctccg
    20221 attattgcga tcaccggttc aaacggcaaa agtaccgtaa cgactttaac taccgaaatg
    20281 gcgaagcaag cggggattaa agtgggaatg ggtggcaaca tcggtgtgcc ggtattaagt
    20341 ttgctggagg gcgattatga cctttttgtg ctggagctat ccagcttcca gcttgagaca
    20401 acttattcac tgaaagcaaa agctgccact gttttaaata ttagcgaaga tcatatggat
    20461 cgctacgatt cgattgccga ctatcgccaa gcgaaattgc ggatttacga taatgcggaa
    20521 aatatcatcg taaacggtga agatgcccaa acttacccga tacaagcggt caaaaaagtg
    20581 attcgttttg cagaacaaaa tgcggaatat agcctacgca atcagatgct ttattcaggc
    20641 gatgatgcaa ttatccaaac taaacagatg ctgattagcg gccgtcataa tgagatgaat
    20701 gcgttagcgg cgatggcatt agcagaagcg gcgaatgttc ctcgtgaagg cattgtgaaa
    20761 gctttgcaaa tttatggtgg tttgccacac cgtttccaag cggtggcaac caatgatggc
    20821 gtgcgttggg tcaatgattc caaagcgacc aatgtgggta gcacggtagc ggcattaaac
    20881 ggcttgaata ttgccggtac actttattta cttttaggtg gtgacggcaa ggctgcggat
    20941 ttttccgaac tcaaaccatt aattaataag ccaaatattg tctgctattg tttcgggcaa
    21001 gatggagcgg cattggcaga attaagcgaa caaagtgtgt tggttgaaac gatgcagcaa
    21061 gcaattgaag caatccgccc acaactgaaa aaaggcgata tggtactgct ttctccggct
    21121 tgtgccagtt tagatcagtt taaaaacttt gagcaacgtg gcgaggtatt tatggcatta
    21181 gcacaaggac agcacgcata atgttagaaa gaattaagtc ggaatgggat aaatgggtca
    21241 gattaacccc ttctaattca ctttatgaca gaactctaat ttggctattt ttaggcctgc
    21301 taattatcgg ttttgtgatg gtaacatctg cttcactccc agttagcaca aggttgaata
    21361 acgatccatt ttattttgcg attcgagacg ggctgtatat tattgcttca attatctttt
    21421 gttatgtttt tgtacaaatc ccaattgaaa aatgggaaaa gcataacttg gcactgtttt
    21481 ttatttcaat cggtttttta atcgccgtac tcattttcgg ccgctcaatt aatggtgcag
    21541 tgcgttggat tccgttgggt attctcaact ttcagccggc agaattagcc aaattagcgg
    21601 tcatttgcta ttttgccagt ttctatgtac gtaaatatga tgaaattcgt aaagaaaaag
    21661 ccagtttctg gcgaccggca gtgattttat tcttattcgg cttcttgctg attttgcagc
    21721 cggatttagg tagtaccttt gtattatttg ttctcacttt ctcaatgctt ttcattgtgg
    21781 gggcaaaaat tatgcaattt atgtttttag gcgtggtggg aacggtgtta tttgcggtgt
    21841 tgattttaac ctcggaatac cgtttaaaac gtgttacctc ctttatggat ccgtttgctg
    21901 atgcttatgg cgacggtttc cagctctcga actcacaaat ggcatttgga caaggtgaat
    21961 tttggggaca aggtttaggt aattcggtac aaaagctaga atatttgcca gaggcacata
    22021 ctgactttgt aatggcggtt attggtgaag aatttggttt ctttggtatt gcttgcatcg
    22081 tacttttact tattctatta acggtgagag ccttaaaaat cagtaaagaa tctttggtgc
    22141 tggaagagcg ttttaaaggc tatatggcat ttgggattgc gatttgggtt ttcctacaag
    22201 gcttcgtaaa cttaggggtg gcatcaggtt tgctgccaac gaagggctta accttcccat
    22261 tagtgagtta tggtggttcg agtttggtaa ttatgtcgat tgcgattgca gttttgctac
    22321 gaattgacca cgaaaaccgt gccgagcgaa tcgggcacgc aaaaattaaa accatctagc
    22381 cgagcggtct gcaacgttac aatttgcaaa attttacaaa aatgagaccg cttgtattag
    22441 ctggaaagca taaaaattca gtaaaatagc acgttttaga ataaaaaaga gttgaaaatg
    22501 gcgaagaaat tattagtaat ggcaggtgga acaggggggc acgttttccc tgcaattgcc
    22561 gtagctcgag agctacaaaa acaaggctgg caaatccgct ggctggggac gaaagaccga
    22621 atggaagcca ctcttgtgcc gaaacacggt attgagattg attttattga aatctcaggc
    22681 ttgcggggta aaggcgttgc agcattgttg aaagcaccgt ttgctatttt taaagcggtg
    22741 atgcaagccc gcaaaatcat taaaaattat cagcctgatg cggtgttggg aatgggcggt
    22801 tatgtgtccg gtccgggcgg tattgcggct aaattatgtg gcgtgccggt gattttacac
    22861 gagcaaaacg cagttgccgg cctaaccaat gtgtggctat ccaaaattgc ccgcaaggtg
    22921 ttacaggctt tccctactgc ttttaaagag gccgaagtag taggtaatcc tgtacgtgaa
    22981 gatttatctg ctcttccgct gccgaatgaa cgtttcgcca aacgaggcta cccgattaac
    23041 attttagtaa tgggtggcag ccaaggggca agagtgatca accaaaccgt gccggaagtg
    23101 gcaaaagtgt tgggtaataa tgtgtttatc agccaccaag tcggtaaagg taatttagcc
    23161 ggtatcgaag aagtctatca acaaaccggc aatgggattg cttccgagtt tattgatgat
    23221 atgaaagccg cgtatgagtg ggcagatttg gtgatttgtc gttccggtgc gttaacggtg
    23281 tgtgaaattg ccgccgtagg tctgcccgct gtgtttgtgc cgttccaaca taaagacagg
    23341 caacaatttt taaacgctaa ctatttggcg gcagatggag cagcagtgat tatcgaacag
    23401 agcgatttca ctccaaaggc attacagcaa gccttagaac ccttaattgc caatcgccaa
    23461 ctcttattgg atatgtcaat gcgagccaga gcaaaatcca ccccaatggc agcaaaacgt
    23521 gtagcggaag tgattattca agaagcgaat taacttacta caagcggtcg tttttggtaa
    23581 aaattttgca aaatgtaacc gcttgcgaat agattaaaag gacaataaat gaaaaatttc
    23641 caagataaag tcaaaaaatt agtgcctgaa atgcgtcgtg tcagccaaat tcattttatc
    23701 gggattggcg gagccggtat gagcggcatt gcggaagtgt tattaaacga gggataccaa
    23761 atttcaggtt cggatattgc agacagagcg gttacacaac gtctatccgc agccggagcg
    23821 aaagtcttta tcggacacca agcagaaaat attgctgggg cgagtgtggt ggtggtttct
    23881 actgcgattg atgaaaccaa ccctgaaatt attgccgctc gagaagctcg aattccggtg
    23941 attcgccgag cagaaatgct tgccgaaatt atgcgttttc gccacggcat tgcgattgca
    24001 ggcacacacg gtaaaaccac tacaaccgca atgatttcaa tgatctacac cgaagcaaaa
    24061 ttagatccga ctttcgtgaa tggcggtttg gtaaaatcta ccggcaaaaa tgctcatttg
    24121 ggggcgagcc gttatttaat tgccgaagcc gatgagagtg atgcttcttt cttgcacttg
    24181 cagccaatgg tgtcggtagt aaccaacatt gagcctgacc atatggacac ctatggtggc
    24241 gattttgaga aaatgaaaga gacttacgta cgatttttgc gtaacttacc tttctacggc
    24301 ttagcggtaa tgtgtgccga tgatgaaacg gtaatggaaa ttgctcctcg tgtcggcaga
    24361 caagtgatta cctatggctt tagcgaaaat gcggattacc gaattgaaga ttaccagcaa
    24421 accggcttcc aagagcatta caccgtagtt tgcccaagcg gtgaacgaat tgatgtgctg
    24481 ttgaatgtgc cgggtatgca caatgcctta aatgcaaccg ctgcgttagc ggtggcaaaa
    24541 gaagaaggga ttggcaatga ggcgatttta gctgctttag ctgatttcca aggggcagga
    24601 cgccgctttg accaattagg ttcatttatt cgcccgaacg gcaaaattat gttagttgat
    24661 gactacggcc accacccaac tgaagttgat gtaaccattc aagccgctcg ttcaggctgg
    24721 gaaggtaaac gtgttgtgat gattttccaa ccgcaccgct attctcgtac ccgtgattta
    24781 ttcgatgaat ttgtacaagt actgtctaaa gtcgatgcct tgattttatt ggatgtgtat
    24841 gctgccggcg aagctccgat tgtgggggca gacagtaaag ccttagcccg ttcaatccgt
    24901 aatttaggta aggtcgatcc gattttggtt tcagataccg atcaacttgg cgaggtatta
    24961 gatcaaatta ttcaagacgg tgatttaatt ttggcacaag gtgcgggcag tgtaagccgc
    25021 atttctcgtg gcttggctga gagctggaaa aattaaatac tctctcccct tgcgggagag
    25081 agaccgaaaa atacttcgtt cagaagtatt tttcagagag agggtatata tttaaaggat
    25141 ttcaaatgag tattaaaaac gaaaaaattg ccgtcttatt cggtggcgtt tcgcaagagc
    25201 gtgaagtttc actgaattct ggtgcagcgg taacagctgc attaaaaagt ttaggctata
    25261 acgtagaagg cattgatact aaagaattcc cgattgaaaa attaaaagaa aaagggattc
    25321 agcgtgtatt taatatttta cacggcggta ttggcgaaaa tggcgtactg caaggtgcgt
    25381 tagagcaaat gggtattcct tacaccggtt gtggcgtaat ggcatcagca gtgacgctgg
    25441 ataaattccg gactaaatta ttatggaatg cagtaggttt accaacagcg gatatggtgg
    25501 tggttcagcg tggacaagcg gtcgattttg accaaattat tgcaaaatta ggcttaccgg
    25561 tatttgtgaa gtcttcgtgt gaaggctcaa gtgtgggtgt attcaaagta aaaaccaaag
    25621 aagaattggc accggcaatt cacgaggcat taaagtttga ttccattgtg ttggtggaag
    25681 aatttttagc cggtaatgaa tattctgtac cggtattaga cggacaagtt ctaccggcgg
    25741 tacaagtaat tccggacggc gaattttatg actaccacgc aaaatatgtg tcggataaca
    25801 cccaatatgt agtaccggca ttaaatgacg aacgccaagc agaggtcgcc aaattagtga
    25861 aagcggctta cgatgtggtt ggctgtcgag gttggagccg tattgatgtg atggaagatg
    25921 gcgaaggaaa attccgcttg gttgaagtaa ataccaaccc gggaatgacc agtcacagta
    25981 ttttcccaaa atcagcagca acagttggta tttcctttga aaaattagtt gaacgcgtat
    26041 tggagttaag tgcttaatgg gcatcttccg caagaagaac agcacaaatg tgcgtttgaa
    26101 tgttcttaat ccaaaaacac ctgtttctcc acgtaaatgg ctagtattca ttaagccatt
    26161 aattgtgtta ttatgtacac tatttgtatt cggtgtgtat agtaattggc aaaatatact
    26221 cgaaagttgg gataaaacac cgattcgcgc ttatgcatta acacataaaa cacaatttac
    26281 aacaaatgca gatattcgtg aaactttgtc taaagaacct gctctaaaag gatatttcgg
    26341 acaaaatatt caagaggtca aagataagct tttatctata ccttgggtta aagatgtggc
    26401 tgttcgtaaa ctttatcccg accgattaag tattactttg ctagaacata aacccgttgc
    26461 aatttggaat gatactaact ttgtctcaga acaaggaacc gtctttagtt taccgaaaga
    26521 cagaatcgat aaaaatggac ttccattact ctatggtcca gatacggaag gaaaaagtgt
    26581 attagaggca tggaataaaa tccgagctga tctaaatgcc cgcaacttgg atttaacctc
    26641 cgtttctgta gataatcgag gttcttggac aattaggctt tctaatcaag tagaattaag
    26701 attaggaaga ggggaatgga cttctaaaat tgatcgtttt gtaacaatct ttcctgaaat
    26761 tcatatacct gaaggtaata gattagctta tgttgattta cgttatccac atggcgcggc
    26821 ggttggattt agtcctataa aaaattaaac tcagtgaaca caaaaacatt atgacaaaag
    26881 cagtagaatc aaaaattatc gttggtcttg acattgggac atcaaaggtt gttgccgttg
    26941 ttggtgaagt attacctgat ggtgtaatta atgttatggg agctggcgtt tgcccttcta
    27001 aaggagtcga tcgaggtggc gttattgatc ttgacgctgc cgttaattct attcaaagag
    27061 ccattgagca ggcggaatct attgccgatt gtcaaattat gggtgtaaca ctggcaatct
    27121 caggtcagca tattgttggt ttaaatgaag caggatcatc aacattatct ggaggtattg
    27181 ttacccaaga taatattgaa agtgctgtgg atatggcaaa ggcaattaaa ttacaagatg
    27241 gcttagaaac attacacatg attccacaag aatatcacgt ggatagattg cctgcgacta
    27301 aaaatccaat tggcttatcg ggtatgcgtt tacaagttca agcacactta attgcttgcc
    27361 atcaagcttg gttaaaaaac ttaaaaaatg cggttgaaca tgctaaatta aaagtcgatc
    27421 aagttgtatt ttcaggtctt gcctctagct attctgtttt aactgaagat gaaaaagagc
    27481 tgggtgtttg cttaattgat attggtggcg gtacgatgga tgtactagtt tataccgatg
    27541 gagcattaag atacagtaaa gtcattccat ttgcaggtaa taacattact gattatttgg
    27601 ctcgtgtatt tacgacatct cgccctgaag ctgaaagcct taaagtaggt tatggtagcg
    27661 caatttcgcc tccaacccat aattcagata aaaaaattga ggtggcagga ctaggtggac
    27721 ggatggcaag aacctttacc cgagctcagg tggcaacggt tacctcacaa tgttataacg
    27781 atttgctaaa agttgttgaa gaggaattaa cccaattacg ccatgaactt ttccaaaaag
    27841 gaataaaaca agagttaatt gccggtgtag tcattactgg tggtggctca caaattgaag
    27901 atattgtaga atgtgctaaa tcaatttttg gttcacaagt tcgtgttgga tatccactca
    27961 atattactgg cttaaccgat tatgtgaata aaccacaata tgcaacagca ttagggcttt
    28021 tacaatatag ccactataat tatactgaac aaggtacaag tacagattct aatgaagata
    28081 tctttgctcc tattggtcgt ggaaccaaga aaatcattga cttcttcaaa tcaaaatttt
    28141 aatagtgtta aaataaacac gcagggagat aaaaatgttt gaacctatta ttgaacaaac
    28201 gcaagatgct atcattaagg tagtgggtgt tggtggcggt ggcggtaatg ccgtagacag
    28261 aatgtctcgc tctgccgatg atattaaagg tgttgaattc tttgatgtaa atactgatgc
    28321 tcaagtttta agaaaaagaa ccacacgcca aactatccaa attggagcaa gtacaactaa
    28381 aggtttaggt gcaggtgctg atccaatggt aggaaaacaa gctgccgaag aagatcgtga
    28441 ggctatcgct aatgcattaa aaggtgcaaa tatgaccttt attgctgttg gtatgggtgg
    28501 aggtaccggt accggagcag cccctgttgt tgctcaaatt gccaaagagc aaggctcact
    28561 aactgtaggc gttgtaacaa aacctttccg cttcgaaggg cctcgccgta tgcgctttgc
    28621 agaccaaggc attaaagagc tttctcaata tgttgattct cttattataa ttcctaatga
    28681 taaattacgt ggtttaggta agcaaacaac agcagtagat gcctttgccg cagcaaatga
    28741 tgttttaagt aactgtgtgc ttggtattac caatatgatt accagttcgg gcggttctac
    28801 cggtgcagat attaacgtgg acttcgcgga tgttcgtaca gtaatgtctg gtaagggaca
    28861 cgctatgatt ggtacaggtt ttgctgaagg tgaagttggt gaaggacgag cggaaaaagc
    28921 aatgaatgat gccatttcta gtccattact tgaaaatgtg gatatttcag gtgcaagtgg
    28981 tatgctcatc aacattagtg ctgggacaga tttcttatta gaagaagttt atgctatgat
    29041 ggacttaatt tatggctttg caacagaaga tgccgcaatt gtatttggtt gtaactatta
    29101 ccctgaaatg gatggaaaag tgagtgtcac tcttgtcgca acaggaatag gccaacctga
    29161 ggaagctcta catatgccac ataaggctca gccagtatat gcacagcaag gaaatcatgt
    29221 tcaagctaca cagcctactc agccaaacca tgcggtacaa caaccaaact ttactcaacc
    29281 gtcaagttat ggtcagccaa atcaatttag tggtcaacca caaccactac aacaacctgt
    29341 ggctccaaaa ccacaatcgg ttgatacagc acaaattttt aacccaaatt caattccggg
    29401 ttttatgaga aatagtcaat aacttccact catttcggaa gtaaggacaa aatatgacta
    29461 aacaaagaac attaaaacaa gcagcaaaag taacaggtat tggcttacat agcggcaaaa
    29521 aagtaacctt aacgttacgc cctgccccag ctaatacagg agttatttat gcccgtaccg
    29581 atttagagcc tgtcgtttat ttccctgcaa gcgcagactc tattcgtgat acacaattat
    29641 gcacatgtat ggtaaatgat gatggtgttc gtatttcaac agtagaacat ttaaacgcag
    29701 caatgtcagc attaggctta gataatgtta ttgttgaagt agatgcacct gaaattccga
    29761 ttatggacgg tagttcaagc ccatttatct atcttttatt agatgccggc atcgaagaac
    29821 aagatgcacc gaagaaattt attcgcatta aagaaacagt acgcgttgaa gaaggcgata
    29881 aatgggccga attaaaacca tacaataaag gttttaaatt gaacttcact attgactttg
    29941 agcacccatt aatccccaaa aatgtaggga gctattccat tgatttttct gctgagaact
    30001 ttattcagca actaagtcga gcgagaacct ttacatttat gaaggatgta gaatacttgc
    30061 aatctattgg tcttgcatta ggtggaagcc ttgataatgc tattgtatta gatgattacc
    30121 gaattctaaa tgaagacggt ttacgattta aagatgaact ggttcgccat aaaatgctgg
    30181 attcgatagg tgacttatat atgtgtggtt ataatatcct aggtgaattt agtgcatata
    30241 aatcaggtca tggcgttaat aataaattat taagagctgt attggaaaat aaaaacgctt
    30301 gggagtttgt tacctttgaa gataaagcag aagtcccaca aggttaccaa gtacaacaag
    30361 aaatttttat ttagtctaaa tggcttaaaa gacgaacaga aatgttcgtc ttttattttg
    30421 caaatttttt ctaatattta accgcttgca acccgcctca ttagcgattt tttcgccctt
    30481 atctatttac tgtttaaaaa aacagttgta ctatataccc atacagttaa tcttgtgtgg
    30541 tgtattatgc ttactcaact tactattaat aattttgcga ttgttcgcca tcttattctt
    30601 gaattaaatg aaggtatgtc tgttattacc ggtgaaaccg gtgccgggaa atcaatcgct
    30661 attgatgcct tagggctatg cttgggttat cgttctgaaa gtgggatgat tagaaacggt
    30721 tcggacaaag cagatataag tgcaaccttt actatgcagc cacatagccc tgcttattta
    30781 tggctacaag agcatgaact gcttgatgaa gataatcctc aagagtgtat cttacgccgt
    30841 atgattaata ttgatggacg ctcaaaagcc tttgtaaata accgatcatt acctgtttca
    30901 caacttcgag agttggggca atatcttatt catttaaatg ggcaacacgc accacaatta
    30961 ctcctaaaaa acgaatatca acttgaaata gtcgatcatt atgccacgtt acagcctcta
    31021 ttgatgaaga tggcaaagca atatgggaat tggaaagaac tgaataagca ggtaaaaaat
    31081 ttccaaaaac agtgccaaga aaatgaagct cgcaaacagc tattagaata tcaagttgag
    31141 gaattagatg aatttgcaat taaagcaaac gaatttgaag aaatggaaga gaaatacaat
    31201 atcttgtctt cttccgagga gcttactgag ctttcagatg aaatcacacg cttattaagt
    31261 gatgatgaaa tcaatgcaaa cagtctgatt tataaagcgt tacgcaatgc agaaaacttg
    31321 gctgaggttg atagccaata tcagggcatt ttagatatgc ttaatgaggc cctgattcag
    31381 attcaagaag caagctccga agtggctcaa ttagccagta aaattgaaca agatccggaa
    31441 ttactacagg agctggataa tagaattgca caaactatat cgttagcacg caaacaccat
    31501 attcaaccga atgaattatg gcaatatcac gcgacattaa aagcagaact acaggaatta
    31561 ctggattttg aagataatga agaacaactc attcaaaatg aaaaacaagc ttaccaagag
    31621 tgtataacat tagcagaaga aatttaccaa aaacgtctag atgccacaca taagctctct
    31681 gaacaagtaa caaaacaaat taaacactta gcaatggaaa acggtgagtt ctttattcat
    31741 atagaacata atcttgaaaa aatgtctgca aatggtgctg actatgtcga gtttaattta
    31801 cgcagcaatt taggacaaca accccaacca ctggcaaaaa ttgcttctgg tggtgagcta
    31861 tctcgcattt ctctggcagt acaagtgctt accgcaaata aactttctac gccaactatt
    31921 atttttgatg aagttgatgt tgggattagt ggctctgctg ccactacagt cggaaagcta
    31981 ctgcgtaagc taggcgaaaa atgccaagta ttatgtgtaa cccatttacc tcaagtggca
    32041 agttacggca accagcagtt taatgtacaa aaatatgtag aaaataatca aactgaaacg
    32101 caaatgacat tactcacaga agcagagcgt attcacgcct tggctcgact attaggcgga
    32161 agcgaaatca ccgaaacggt tttagctaat gcaaaagaaa tgctaaattt agcgaaaaat
    32221 aacgaatagc caaaaagaaa aatcgcatca atgaatattg atgcgattat gaatttggtg
    32281 gaggtaaacg ggatcgaacc gatgacctct tgcatgccat gcaagcgctc tcccaactga
    32341 gctatacccc cttaatacaa gcggaataat atgctttccg cttgaagatg tcaatggctt
    32401 taatcaagca aggtgttgat tgattaaaaa ctagctattc gcctgaataa actcaatcgc
    32461 tttttgtaag cgagctaagg ttctttcttt accgactaat ttggcggtga tatccattga
    32521 cggcgattgc ccacttcctg ttaccgctaa acggaacggc ataccgactt tgcccatacc
    32581 aatttccagc tcggcagcgg tttggttcat tgcctcgtgg atattttcca ccgtccagtc
    32641 attgcaagcg gtcaattttt ccaataattt tgcaagtgga gcaacggctt cggctttgaa
    32701 gtttttagca gcagcttttt cgtcgtaagc cttaaattct tgatagaaat agcggctgct
    32761 ttcggcaagc tcttttaagg ttttgcaacg ttcgcccagt acagggataa tttcttccaa
    32821 ttttggaccg cttgtgaaat caatgccttg agtttgcata tgccattcaa gatgttttgc
    32881 cacataactt ggggcaagac tgcggatata gtgttggttc aaccattgta atttttcagt
    32941 gttaaatgca cttgccgatt tactgactga atgaatgtcg aacagctcga tcatttcgtc
    33001 acgagagaaa atctcttggt cgccgtgtcc ccagcctaaa cgcacaaggt agttaattaa
    33061 ggcttccggt agatagccgt catcacgata ttgcattacg ctcaccgcac cgtggcgttt
    33121 ggagagtttt tgcccgtcat cgccgttgat cattgaaacg tgggcgtagg ttgggattgg
    33181 tgctcctaat gctttcaaaa tgttgatttg gcgtggtgta ttgttgatat ggtcttcacc
    33241 ccgcacaacg tgagtaatgc ccatatccca gtcgtccacc accacacaga aattgtaggt
    33301 cggcgagccg tcagtacggc gaataatcaa gtcatctaat tcgctattgg cgatttcaat
    33361 tcgcccacgc accgcatcgt caaatactac cgagccttcg gtcgggtttt tgaaacgcac
    33421 aacatgtggt tggctcgggt cgttttgcgg attgtgtaag cagtgctgat cgtatttcgc
    33481 tttctcttta tttgcttctt gctctgcacg tacttcgtct aaacgttctt tcgagcagta
    33541 gcaacggtat gccgtgccgg cttctaacat ttggtcgatc acttggttat agcgatcgaa
    33601 acgcttggtt tgaaagtatg ggccgtgttc ccacgccaaa tccagccatt ccataccctc
    33661 taaaatagcg gcggttgcct caggggttga gcgttcaaga tcggtatctt caatacgtaa
    33721 cacaaattca ccatcattat gcttagcata taaccaagag tagagcgcgg tcctcgcccc
    33781 acctacgtgc aagtagccag ttgggctagg tgcaaaacgg gtacggactt ttacattcgg
    33841 atctaagggg aaaagggttt caattttcat tttatattgc ctaattgatg attcttaaga
    33901 aaaacttgtc tattttacta cgcttgaggg tgaatcatag taaaaaatta aatttgcggg
    33961 gtaaaaaatc agcaaacggg gtaaaaagaa caaaaagggt ttgacgaaac agcaaaaatc
    34021 tctataattc acttccacaa cagcgggcga ttagctcagt tgggagagca cctcccttac
    34081 aaggaggggg tcactggttc gagaccggta tcgcccacca cttcaactta agtgtttcgt
    34141 tgttgtatca caatctaatt ttgaaaacgg gcgattagct cagttgggag agcacctccc
    34201 ttacaaggag ggggtcactg gttcgagacc ggtatcgccc accacttcaa cttaagtgtt
    34261 tcgttttcaa attccctttg attttaagtc tcaagtgggc gattagctca gttgggagag
    34321 cacctccctt acaaggaggg ggtcactggt tcgagaccgg tatcgcccac cacttaagac
    34381 taaaatcata aacttcaaat ggcgattttt cgtatctga
//
LOCUS       DANLRW010000014        32623 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.014, whole genome shotgun sequence.
ACCESSION   DANLRW010000014 DANLRW010000000
VERSION     DANLRW010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 32623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32623
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.014"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(162..896)
                     /locus_tag="PXA71_000531"
     CDS             complement(162..896)
                     /locus_tag="PXA71_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5104672.1"
                     /translation="MARSSYFARLAEWTLLEHLLVKQPENISVCSFGQSFGTSGRLDA
                     EYYQPKFASLFAQLANFKTMKLGEIVNLQKSVEPGSEAYQTEGIPFVRVSDLSKFGIS
                     QTDKYLHPKDFGNVVRPKKDSILLTKDGTVGIAYRVPQDLNVITSGAIVHLELKTDEV
                     LPDYLALALNSPAVQLQAERDAGGSIIQHWKPSEILDVVIPVLPKNIQQTISDKVQQS
                     FALRVESEVLLEKAKILVEQEIENMR"
     gene            complement(920..2278)
                     /locus_tag="PXA71_000532"
     CDS             complement(920..2278)
                     /locus_tag="PXA71_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5104673.1"
                     /translation="MDSTFFLKKYLNHPSFNFPLSLNEVSLIKSGTTPTDRDDNLKEG
                     VVLLKTNDIRNNLLNKYSSVDYFISEDINEKMISSQLKEGDVLVNIVGATLEVVGRVA
                     YVSSTFPKANITQAMSFVRLKSKYNKELLPTYLFAFLQSSYGKIQINRNARPTGQYNL
                     NNEELGAIKVPLIDLETQKQVDKIIKQSNDFVQKSTQSYQEAETLLLENLGLRAFQAD
                     SNPVNVKSLKESFLQTGRLDAEYYQTKYEQYWNLIQSQDYVFIRDEYLHITQKPDWTK
                     PMYQYIEIGDVNIGDGSYQTNWIETQELPANAKTQAQTGDILISTVRPYRGAVTIIGE
                     NDQDLVVSGAFTVLRRKENSVFNNEVLKVLLRSELYKDWLLQFNVGTSYPVIKDNDIL
                     NLPIPKISGEIQEKIAEYIRQSNDLRQQAQNLLAQAKNNVEFEIENNSFNINELEVRG
                     GG"
     gene            complement(2377..4380)
                     /locus_tag="PXA71_000533"
     CDS             complement(2377..4380)
                     /locus_tag="PXA71_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HDL5104674.1"
                     /translation="MIEKQNYHLVQLLKDSNYQLTQFSPAYIKKLEESIFLKSGKNGD
                     IPHIQCLVRKKDIKLTPEEAVRQLYLMNLHYEYDYPFERMELEYSVVFGREKKRADIV
                     IFDRDNPNAVYIMVELKKPKLKDGKEQLKSYCNATGAPIGVWTNGESISYYNRRDPNY
                     FKDIPDIPNAQQKLSDLLQERWTIQDLIDNDKIAKQRKSLKDLVIEMEDEVLANAGVD
                     VFEELFQLIFTKLYDEMESTRNKSRYLEFRNYGDTESELKAKIQSLFDRAKNKWEGVF
                     AESAKINLSPSHLAICVSSLEEVKLFNSNLDVVDEAFEYLINKSSKGEKGQYFTPRYV
                     IDMCVKMLDPKPEETVIDTAAGSCGFPVHSIFHVWEKQLKARGLERSHLFTAEEKLPE
                     QTDYVKEKVFAIDFDEKAVRVARTLNLIAGDGQTNVLHLNTLDYERWEDFTKEEEWND
                     VYGEGWKKLRKLRKTKNENRDFQFDVLMANPPFAGDIKETRILARYELGKNSKGKQQS
                     KVGRDILFIERNLDFLKDGGRMAIVLPQGRFNNSSDKYIRDFIAERCRILAVVGLHGN
                     VFKPHTGTKTSVLFVQKWHDELCPKVEDYPIFFATMQKSSKDNSGDKIYVKNADGTLK
                     LDNHQHLIVEHDLFNHDNSTQDGIAEAFIEFAKKEKLSFVGKD"
     gene            complement(4488..8204)
                     /gene="metH"
                     /locus_tag="PXA71_000534"
     CDS             complement(4488..8204)
                     /gene="metH"
                     /locus_tag="PXA71_000534"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL5104675.1"
                     /translation="MNTQHRTELLQNALTERILILDGAMGTMIQKYKLTESDFRGERF
                     KNSTIDLKGNNDLLTLTQPLLISAIHEKYLAAGADIIETNTFSATTIAQADYELESIA
                     YELNLVGAKLARLAADKFSIPEKPRFVAGILGPTNRTCSISPDVNDPGFRNITFMQLV
                     EAYAEATRGLIEGGADLIMIETIFDTLNAKAAVFAIETVFDELGVKLPIMISGTITDA
                     SGRTLSGQTTEAFYNSLRHAKPLTFGLNCALGPKELRPYVEMMSKISETFVSVHPNAG
                     LPNAFGGYDLGAEEMATYIKEWAELGWLNIVGGCCGTTPEHIQAFAEATKGVAPRKLP
                     EIPTAMRLSGLEPLTIDDNSLFVNVGERNNVTGSAKFKKLIKEEKFAEAIEIAISQVE
                     NGAQVIDVNMDEALLDSKKCMTRFLNILATEPEAAKVPIMIDSSKWEVIEAGLQTVQG
                     KPIVNSISLKEGEEKFIHQAKLCRRYGAAVVVMAFDEVGQADTEERKVEICTRAYRIL
                     VDQLGFPPEDIIFDPNIFAIATGIEEHNNYGVDFIQACERIKRDLPHAKISGGVSNVS
                     FSFRGNNVVREAIHAVFLYYAIKAGMDMGIVNAGQLAIYDDLDPELREAIEDAVLNHR
                     HDTTDRLLEISEKYRGVKVESADESAAEWRNLPVAERLKHALVKGITTYIIEDTEEAR
                     QQFASPLEVIEGPLMAGMDVVGDLFGDGKMFLPQVVKSARVMKQSVAYLEPYINATKQ
                     KGSSNGKMVIATVKGDVHDIGKNIVSVVLQCNNFEVIDLGVMVPADVIIETAIREKAD
                     LIGLSGLITPSLDEMEYFLGEMNRLKLDIPVLIGGATTSKEHTAIKLYPKYNYPVVYT
                     ANASRCVTVCATLMNPEAKAEFWEKTKAEYEEIQRKFAVRKPLRNGLSIEEARANRFD
                     GFSGEWADYVPPTPKQTGIIEYKNVPIATLRKFIDWSPFFMLWGLMGGYPDAFDYPEG
                     GEEARRVYNDAQRVLDEFEQNGKLNPSGIMGIFPAVREGDDIAILNEDRTACIGKSYH
                     LRQQSERGKNSKSPYNLCLSDFIADRESGQQDWFGMFAVCAGIEEHYLVESYKAAGDD
                     YNAILLQAVGDRLAEAMAEYLHFELRTKVWGYTVEDEDNGRLIREEYIGIRPAPGYPS
                     CPEHTEKQIIWDLLEVEQRIGMKLTESYAMWPAASVCGWYFTHPTSNYFTLGKIDEDQ
                     VLDYAKRKGWDELTAKKWLSVAMKQDVKSQAENI"
     gene            8370..9653
                     /locus_tag="PXA71_000535"
     CDS             8370..9653
                     /locus_tag="PXA71_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5104676.1"
                     /translation="MTACHEPKRSIWQQIFTKNMLLCVYTGFCSGLPLFVLIQLMPAW
                     LTSANLDIKTIAAFTLTSLPYTWKFLWAALLDRYFPPFLGRRKSWIFISQIGLLVILA
                     SFGLFNPVQDISIIVTLSVLLAFLSATQDIVVDAFRREILSDNELGLGNSIHVNAYRI
                     AGLIPGGLSLFLADHYAWDTVFLITAAFLVPCLFVTLIIAAEPNHKPIDRSKPFYMAF
                     VDPFKEFFTRKGVAGAIGLILFIFLYKLGDSLATTLQTKFILDMGFTKSHIAGIVKIT
                     SLWCSIGGGIIGGVAMLKLGVNRALWLFGFVQLITILGFAYLASFEHFPTESIGAAEL
                     WKLGLVMAGEYLGVGLGTAAFVAFMARETNPAYTAMQLAIFTSLAALPSKMLGAYTGH
                     LVEMMGYYQFFWLCFFIGIPGMLMLFKVAPWGQAE"
     gene            9997..10665
                     /locus_tag="PXA71_000536"
     CDS             9997..10665
                     /locus_tag="PXA71_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5104677.1"
                     /translation="MAHNGSGKSTLMRLLSGDITPTSGSILVDGLPLHQLSTKEAAKH
                     IAYLPQRLPEAADFLVQELVALGRFPYQKWLQKPTEFDVQIVEQAMESTSVTQFAKQP
                     VNSLSGGEKQRVWLAMCLAQQTPYLLLDEPLAALDIVYQVEVMQLIRKLVNEQGLTVI
                     IIIHDINLASQFCDEIIALKQGELCIQGSVDEIMQEQKLLEIFGLKLHLFNHPAGLHK
                     VAVL"
     gene            10662..11543
                     /locus_tag="PXA71_000537"
     CDS             10662..11543
                     /locus_tag="PXA71_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5104678.1"
                     /translation="MMFRQYKRFIFLFILQISTAFAQPNIFTPDWSIASALTEMGNPP
                     IAMGDKRIYPLWSHRPIQPNSVLDIGARYQPNRELLAQFPVELVLSNFFYAHLASVYP
                     KEIPQIDVLFDGGNTEPQQHWHTYQKATRMIGTEIKNPNAAEAYLTKTEQTLAQWGKE
                     ILNSNPDIDYYSVVQFGSPRELRIYASNSMFRVAFDLMGLKQADLGVGDRWGNKLIPV
                     SDLAKLPERTCLIVISPFSKMTQADLENSYIWQRLGFGKNRCMKVLPPVWLFGGADSI
                     SHFAEFLHNAMTQGEKE"
     gene            11543..12358
                     /locus_tag="PXA71_000538"
     CDS             11543..12358
                     /locus_tag="PXA71_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL5104679.1"
                     /translation="MKSSFLLIGCILLSLVTAVIRLNMVWEWEWQLLLINVDLLPINQ
                     AAVKAALLPEMTTSFLAGGLLAIASSGLQHIVRNNLASDSTLAVSSGAQLALMIAVIF
                     FPAAELFSSFWIALLGSLAAIVLVLFIAKASKLNPLTLILGGLIVNILFGAIASLLTL
                     FYFDFLFGVMVWGSGSLLQDGWATSITLAITVVVAFFIFVLLSRPLTILSLDDEQARR
                     LGAPVNLLRYLVIFVCAAITALVVSKIGVIGFIGFAVQVWLILPKYDIYYFAS"
     gene            12355..13491
                     /locus_tag="PXA71_000539"
     CDS             12355..13491
                     /locus_tag="PXA71_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5104680.1"
                     /translation="MIAFLAGGFLLFFTNNLIGIVSRIYDTLLPVGAFTATLGAPLLI
                     FLVLRQRKAQFEASNTAYFPVKRLNSWKLPILLLCAGVILFCLLQIIAPTMNGWAISI
                     DENLMSSYRLPRSLSAIATGAMLAVSGSLLQILTRNPMASPEVLGVSSGATIAAVLSF
                     LLFPTLSSISFLLFGVLGSLTVLALIMWLSRKLQPSALMITGVAIGALVSGLMAIIQL
                     SGSPRLTAVISWLSGSTYYANPNTVWILLSVAILLISATLLFIKPLRLISLGETVSYH
                     LGLEVKKVQMIVLLLIALMSAASTLAVGPMSFIGLMTPHLAKNLGAITPEKQIPISAL
                     LGAMLMLIADWLGRYLIFPYEIGAGIIASILGGIYFLLLLKQHK"
     gene            13519..13917
                     /locus_tag="PXA71_000540"
     CDS             13519..13917
                     /locus_tag="PXA71_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5104681.1"
                     /translation="MNTLSKAIKLALYSSGIGFISTAYAETVTHLDTVEVSAETPNAS
                     SEETGRYAQKKAKGSNGMALSAKDTPQSVTAVTHQQIRDQNLNTIAKALEATHGVSVS
                     LLDRGRYSFSARGFGIDKVKVDGMDLKVSK"
     gene            13952..15655
                     /locus_tag="PXA71_000541"
     CDS             13952..15655
                     /locus_tag="PXA71_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL5104682.1"
                     /translation="MLYDRVEVVRGATGLTTGAGDPSASVNLVRKRANSISRYTILEA
                     GIGRYADFNTMIDHSQALNNSGSVRGRFIAEHKNGNTFIKNEKERYTTLYGNIEADLT
                     DTTKLGLGVSYQKEKRDAALWGGLPAFYSDGGETNWSRSKNASPEWAYWDNESVNYFA
                     DITQKLGEKWELALKGNYRVGKHNSELFYFSGSSLNRQDGLGWSPWPGKFKNDNTQSN
                     VQLDLTGSFSAWGLEHDAAIGIQYNRAHRNSYAADNSTFDGAFDFNNWNGIYARPNWG
                     SMSEKYYQNLKEFGVYVSTRLHLTDRLSMLLGSRISSYRTEGTFYGSTQNFHANDVWT
                     PYAGLTFDINPQNTVYVSYTDIFKPQSQVDINNKLLSPVTGETYEAGWKGSYFNDNLQ
                     TQISVFETRQDNLAQSAGINPNTLLAYYTASKGAKVRGFEVEASGNVTEKLKLSAGYT
                     QWKGDDASGNPINTTQPRKQFKLFATYDMNRLVQGLTVGAGVNWQSRIYTKHATYGEY
                     GQKAYTLVNLMARYQFNDNFSAQLNIDNLFDKKYRNALSFSQYSYGEPFYTRLNLRYE
                     F"
     gene            15767..16411
                     /gene="adk"
                     /locus_tag="PXA71_000542"
     CDS             15767..16411
                     /gene="adk"
                     /locus_tag="PXA71_000542"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDL5104683.1"
                     /translation="MKVILLGAPGAGKGTQAQFIMNKFGIPQISTGDMFRAAIKESTE
                     LGKQAKALMDEGKLVPDELTVALVKDRIAQPDCANGFLLDGFPRTIPQADALKESGVK
                     IDLVLEFDVADEVIVERMSGRRVHQPSGRTYHVVYNPPKVEGKDDVTGEDLIIRQDDK
                     PETVLERLAIYHKQTKPLIAYYTAEAEAGNTRYERLDGTKPVEEVSAELAKILS"
     gene            complement(16473..17288)
                     /locus_tag="PXA71_000543"
     CDS             complement(16473..17288)
                     /locus_tag="PXA71_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL5104684.1"
                     /translation="MSYKVVFSLLFSLFLSTANANWTKINDVNYTWGPFNIYHITLFT
                     ESGTYVEGTRPLMLTLQYKKPWEGRDFAVSLARTWNNLGIKLPEKELDEVITHLRKTF
                     PDIKPEDTLHYIALEDRGYFILNDKVVSDVFNKAFNDAIVAIWLDPKMDISHQLLDPS
                     YKPRAEAESIKPQVEERVAENLQEPIVNTEVSKELKADSQAVEQAPNKIDIPVADKTQ
                     ASVVNEATQPVENKDKKEPEKLEEKPKEMKIENPEVFISPIYDDILMLTKYCV"
     gene            17478..17693
                     /locus_tag="PXA71_000544"
     CDS             17478..17693
                     /locus_tag="PXA71_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HDL5104685.1"
                     /translation="MFPEFRDLITQLKQNNSHFARLFDKHNELDQRIKNMEANIELAT
                     HEEVEALKKEKLHLKDQLYAILKQESA"
     gene            complement(17752..18909)
                     /locus_tag="PXA71_000545"
     CDS             complement(17752..18909)
                     /locus_tag="PXA71_000545"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HDL5104686.1"
                     /translation="MSLDLADIRTQITNLDRNLLKLLAERHRLAFDVVRSKEITQKPL
                     RDLEREKILLQELVNFAEAENYQLDPQYVTQIFQRIIEDSVLTQQNYLQNKLNAQKEE
                     QVSIAFLGMRGSYSNMASRQFAKKYQGTLAELSCHSFNEVFEKVSLGEADFGVLPLEN
                     TTSGSINEVYDLLQHTDLTLVGELAYPIKHCVLANGTVDLAEVDTIYTHPQPAQQCSQ
                     FLAGLDKVHIKYCESSSHAMQMVARLNKPNIVALGNEDGGKLYGLTNIKTDIANQAHN
                     ITRFIVVAKEAVQVSPQVQTKTLLLMTTTQQAGALVDALMVFKNHHIRMMKLESRPIY
                     GKPWEEMFYVELEANIHSENTQKALAELEQVTSYLKVLGCYPSEIIEPVKL"
     gene            complement(19031..21097)
                     /gene="prlC"
                     /locus_tag="PXA71_000546"
     CDS             complement(19031..21097)
                     /gene="prlC"
                     /locus_tag="PXA71_000546"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HDL5104687.1"
                     /translation="MSNPLLNYTGLPAFSQIKPEHIKPAVEAVIKECRETVEKVAQIE
                     NPTWENFYMPQAMAEDKFSRAWSPVGHLNAVKNSPELREAYQACLPLLSEYSTWAGQH
                     QGLYQGYVKLKNSPEFETYSVAQKKAIENSLQDFELSGISLPAEKQKRYGEISARLSE
                     LNSQFSNNVLDATMGWDIVITDEAQLKGLPESALEAAKLSAESKGKKGYRFTLEIPSY
                     LPVMTYCENKALREEMYRAYVTRASDQGPNAGKWDNSAVIDEILKLRHEKAQLLGFKT
                     YSDYSLATKMAENPQQVLDFLNDLAARSKAQGKNELCDLKKFAKAHFGIEHLDLWDIP
                     FYSEKQKQALYSVNDEELRPYFPENRVLSGLFEVIKRIFGMRVEEQKDVDVWHKDVRF
                     FNIFDKNDRLRGSFYLDLYARENKRGGAWMDDCINQKRLADGTLQKPVAYLTCNFNKP
                     IGDKPALFTHDEVTTLFHEFGHGIHHMLTEIDVGDVAGINGVPWDAVELPSQFLENWC
                     WEEEALAFISGHYETGEPLPKAKLEQLLAAKNFQAAMFVLRQLEFGLFDFRLHTEYDP
                     SKQGQVLALLKEVKDQVAVAKGVEWARTPHSFSHIFAGGYAAGYYSYLWAEVLSADAY
                     SRFEEEGIFNPETGQSFLDNILTRGGSEEPMVLFERFRGRKPTLDALLRHKGIVGNAE
                     PVDCTQ"
     gene            complement(21228..21968)
                     /gene="pflA"
                     /locus_tag="PXA71_000547"
     CDS             complement(21228..21968)
                     /gene="pflA"
                     /locus_tag="PXA71_000547"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HDL5104688.1"
                     /translation="MSVVGRIHSFESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWD
                     LDGGKEITVEELMKEVTTYKHFMKATGGGVTASGGEAVLQMEFVRDWFRACKAEGINT
                     CLDTNGFVRHYSPVVDEMLEVTDLVLLDLKQLNDEVHQDLVGVSNKRTLDFARYLHKL
                     NKPTWVRYVVVPGYTDDDDSAHRLGQFIQGMDNIEKVELLPYHRLGAHKWETLGYKYE
                     LEGVMSPPKEDLERIQKIIESYGHTVKF"
     gene            complement(22217..23242)
                     /locus_tag="PXA71_000548"
     CDS             complement(22217..23242)
                     /locus_tag="PXA71_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5104689.1"
                     /translation="MSKQDLIRSSVAEYLTFITATGESQVDAVYADENVWLSQKMMAV
                     LYDVDVRTISYHLKKIFSDNELAENSVIQFFWITAQDGKNYHTKHYNLSAIIAVGYKV
                     NSERAVQFRKWATEIVHSFAIKGFAMDDERLKNDGTILGKKYFEEQLARIREIRLSER
                     KFYQKITDIYATAVDYDRTATATKRFFATVQNKLHWAIHGHTAAELIMARANAEKPNM
                     GLTNWKDAPQGKIYPFDVVVAKNYLSDNELAQLQRLVSAYLDMAEDMAERQIPMTMAD
                     WETRLNRFLAATDREILQDAGKVTAEIAKSFALSEFEKYRVKQDLTYESDFDLLVKEV
                     AAKYHAG"
     gene            complement(23477..25801)
                     /gene="pflB"
                     /locus_tag="PXA71_000549"
     CDS             complement(23477..25801)
                     /gene="pflB"
                     /locus_tag="PXA71_000549"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HDL5104690.1"
                     /translation="MTQLTDAQQKAWEGFAAGEWQTEVNVRDFIQKNYTPYEGDESFL
                     AEVTPATSKLWADVMEMIKVENKTHEPYDIDCDTPSTITSHAPGYIDKSLEKIVGLQT
                     DAPLKRAIMPFGGINMVKGSCKVYRRELKPEVEQIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVITGLPDAYGRGRIIGDYRRMALYGADFLMKDKQRQFASLQARLESGEDIQATI
                     QLREEIAEQHRALGKMKEMAASYGFDISGPATNAQEAVQWTYFAYLAAVKSQNGAAMS
                     FGRVSSFLDIYIERDLKAGKITEQEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMW
                     ATETLAGMGLDGRTLVTKNSFRILHTLYTMGPSPEPNLTILWSEQLPEAFKRYCAKVS
                     IDTSSVQYENDDLMRPDFQNDDYAIACCVSPMIVGKMMQFFGARANLAKTLLYAINGG
                     VDEKSGDQVGPKTEAITSEYLDYDDVMTRLDSFMDWLATQYVTALNIIHFMHDKYAYE
                     AALMALHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRTDIEIKNKAGEVVGVAK
                     NVATDFEIEGEYPQFGNNDNRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSN
                     VVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTF
                     SIVPNALGKDYEAQKRNLAGLMDGYFHHEATVEGGQHLNVNVLNRDTLLDAVEHPEKY
                     PQLTIRVSGYAVRFNSLTKEQQMDVITRTFTESM"
     gene            complement(25891..26715)
                     /gene="focA"
                     /locus_tag="PXA71_000550"
     CDS             complement(25891..26715)
                     /gene="focA"
                     /locus_tag="PXA71_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HDL5104691.1"
                     /translation="MFSPAEMAKIAEDGAVYKATKNQLYSFLSAITAGGFIAIAFVFY
                     TTTQVGASQMPWGMAKLIGGLVFSLGVIMCVVFGAELFTSSTLTIVARASQRINWLQM
                     FKNWVVVYFGNFVGAISIVLLIWFSGQIMAAKGQWGLVILNTAQHKIHHQWFEAFCLG
                     IFCNIMVCIAVWMSYAGKSLTDKAFIMMLPIAMFVASGFEHCVANMFMIPMGIAISHF
                     ASPEFWTAINVDPTQFADLDVSHFVFKNLIPATLGNIVGGVFFIGLMQWFLYIRKH"
     gene            26916..27410
                     /locus_tag="PXA71_000551"
     CDS             26916..27410
                     /locus_tag="PXA71_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5104692.1"
                     /translation="MTEYLTSFFSLFFSEQNQLFTMFLSGFLSATLLPGNSEIIFTTL
                     ASQHLITYGSLSSFSLFNLLLVATLGNSLGSITTYAIGLLLPRPQNTTNRYSQWALAK
                     SEKYGVLVLLFSWLPIVGDIFCGIAGWLRFSLWQSILFIVIGKLLRYLFLLATLYSVL
                     PHIL"
     gene            complement(27464..28333)
                     /gene="htpX"
                     /locus_tag="PXA71_000552"
     CDS             complement(27464..28333)
                     /gene="htpX"
                     /locus_tag="PXA71_000552"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HDL5104693.1"
                     /translation="MAKRVILFLLTNLAITFVLGIVLNLIFKVTGIQGQSTAGILVLS
                     LVFGFSGSLISLFMSKSMALRSVGAEVITQPRNEAEQWLFNTVQRQAQQANIPMPDIA
                     IYHSADVNAFATGATKSNSLVAVSTGLLNSMTKDEAEAVVAHEVAHIANGDMVTMTLL
                     QGVLNTFVIFLARIISTMAASSRDENGNSSTNTLVFWVVDIVLQMVFGVLATMIAMWF
                     SRQREFRADAGSAQLVGKEKMIAALQRLQRVHEPQEMEGSLAAFMINGSRGKELFMSH
                     PPLEKRIEALRNL"
     gene            complement(28421..29503)
                     /gene="dinB"
                     /locus_tag="PXA71_000553"
     CDS             complement(28421..29503)
                     /gene="dinB"
                     /locus_tag="PXA71_000553"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HDL5104694.1"
                     /translation="MSIQAKHKRKIIHIDMDCFYAAVEMRENPALVGKPVAVGGNANQ
                     RGVLTTCNYEARKFGLHSAMPTATALKKCPNLILLPVNMALYKSVSAQIHEIFHRYTD
                     VIEALSLDEAYLDVTECERYFGSATWIAQAIRNDIFNELHLTASAGVAPLKFLAKITS
                     DQNKPNGQCVITPDDVQNFVKNLPLAKIPGVGKVTNEKLKQLGFETCGDIQQAEKAVI
                     YRAFGKFGQRLWDFSHGIDERAVEPYRERKSLAVENTLLHDISTLEQAEKIVADLFDK
                     LVFRLQRNWGDTPLTEFKKLGIKLKFDDFSQTTLERTTDGFAYERFGELLQQIFTRRK
                     ERKVRLIGLSVHFPEKKVNKQLNLWE"
     gene            29626..30537
                     /locus_tag="PXA71_000554"
     CDS             29626..30537
                     /locus_tag="PXA71_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine exporter LysO family protein"
                     /protein_id="HDL5104695.1"
                     /translation="MLYGLAIVLIPLFLGYLITLKNHRHMAIVNRVVSLCLYLILLVM
                     GISLGQIDNILTELPQIGGTAFSLVVILLLSNIIGLVIYDKLQPMKRDKVNQDQLPSR
                     LHLLIDSFKLIGITLLGGIIGYFTKGVVDFPLHASTYVLEVMIFGVGIQLRNSGIPLR
                     EVFFNKRGIYTSIVMVASSLIGGVISAFTLDLSLAKGLTFASAFGWYSLSSVLVNDAW
                     GPIYGSIAFFNDISREILCLFLVPLFMRQFPSTAVGIGGATSLDCMLPIIQKSGGIQI
                     VPLAISFGFIVNLAAPLLLAVFIGLEG"
     gene            30643..32409
                     /gene="aspS"
                     /locus_tag="PXA71_000555"
     CDS             30643..32409
                     /gene="aspS"
                     /locus_tag="PXA71_000555"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDL5104696.1"
                     /translation="MMRSHYCGALNRSHLGQTVTLSGWVHRVRNLGRFIFMQIRDREG
                     IVQVFFDEKDEALFKQASALRSEACVQIQGEVIARDESQINKEMATGEIEVLVKNLVV
                     YNNAEVLPLDFNQNNTEEQRLKYRYLDLRRPEMAEKLKTRAKITSFVRRFMDDNGFLD
                     IETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR
                     DEDLRADRQPEFTQIDVETSFMTAEEVRALMEAMIHGLWKETLGVDLGKFPMMTWNEA
                     MTRFGSDKPDLRNPLEMVDVADILKSVDFKVFSGPANDPKGRVVALRVPNGAALTRKN
                     IDDYTQFVGIYGAKGLAWLKVNDMNTGLEGIQSPVAKFLNEEVLKALVKRLNLQKDDI
                     VFFGADNWHVATNAIGALRLKVGNDLGLTDTTAWKPLWVIDFPMFERDDEGNLSAMHH
                     PFTSPKELSPEELVQDPENAVANAYDMVINGYEVGGGSVRIFSQQMQQTVFSILGINE
                     EEQKEKFGFLLDALKFGTPPHAGLAFGLDRLTMLITGTDNIRDVIAFPKTTAAACLMT
                     EAPSYANPKALEELAIRTIPQE"
BASE COUNT         9131 a         7023 c         6403 g        10066 t
ORIGIN      
        1 cgattttatt ctatcaatat gtgttctatc cttacctaag gaataatgga agttatacca
       61 gctattacaa ctgagccata acattaaaaa aggagagtgg taatctatcc ttgctttatt
      121 aaaccactct tttttcaaat cttgattatg attaggcatt attacctcat attttctatt
      181 tcttgttcta caagtatttt agctttttcc agtaaaactt cactttctac tctcaatgca
      241 aaactttgtt gtactttgtc gctaatggtt tgctggatat ttttaggtaa taccggaatc
      301 actacatcta aaatttcaga cggtttccaa tgttggataa tagagcctcc cgcatctctt
      361 tccgcttgta attgtacagc aggagaattc aatgctaacg ccaaataatc gggtaaaact
      421 tcgtcagttt taagctctag atgcacaatt gcccctgatg taatcacatt caaatcttgc
      481 ggaacacggt aagcaatgcc gactgtgccg tctttagtca gtaatatact gtctttttta
      541 ggtcttacaa cattgccaaa atctttcgga tgtaagtatt tatctgtttg gctgatgccg
      601 aatttagata aatccgatac acgcacaaag ggtattccct ctgtttgata agcttccgag
      661 cccggttcta ccgatttttg taaattaaca atctcaccta atttcatcgt tttgaaattg
      721 gctaattgtg caaataagct tgcaaattta ggttggtaat attctgcatc taaacgaccg
      781 cttgtaccga atgattgacc gaatgaacat accgaaatat tttcaggctg tttgacaagt
      841 aaatgttcta ataaagtcca ttctgctaaa cgtgcaaaat aagaagatct cgccaataaa
      901 ccataaggct tagcaggatc tacccccccc cccgcacttc taactcattg atattaaatg
      961 aattattttc aatttcaaac tctacattat ttttagcttg agcgagtaaa ttttgtgctt
     1021 gctgccttaa atcgttgctt tggcggatat attcagcaat tttttcttgg atttctccac
     1081 ttattttagg aattggtaaa ttcaaaatat cgttatcttt aattacagga taactcgtac
     1141 ctacattaaa ttgtagtaac caatctttat atagttctga ccgtaatagc acctttaaaa
     1201 cttcattatt aaaaacagag ttttcctttc tgcgtaatac tgtaaacgca ccactaacaa
     1261 ctaaatcttg atcattttca ccgataattg ttactgcacc acgataaggg cgaacggttg
     1321 aaattaaaat atcacctgtt tgggcttgag ttttagcatt agcaggtaat tcttgtgtct
     1381 ctatccaatt cgtttgatat gaaccatcac caatattaac atcaccaatt tcaatatatt
     1441 gatacatcgg ttttgtccaa tcaggttttt gggtgatatg taaatattca tcacgaataa
     1501 aaacataatc ttgcgattga attaaattcc agtattgctc atatttagtt tgataatact
     1561 ctgcatctaa tcgtcctgtt tgtaagaaac tctcttttaa ggatttaaca tttacaggat
     1621 tgctatcagc ttgaaaagct ctcaaaccga gattttctaa taataaagtt tcagcttctt
     1681 ggtaactttg tgttgatttt tgtacaaaat cattactttg cttaatgatt ttatctacct
     1741 gcttttgtgt ttctagatca attaagggga ctttaatcgc accaagctcc tcattattca
     1801 gattgtattg tcctgttggg cgtgcattcc ggttaatttg gatttttcca taagaacttt
     1861 gtaaaaaagc aaataaatac gttggtaata attctttatt atattttgat tttaatctta
     1921 caaaagacat tgcttgtgta atatttgctt ttggaaaagt gctactaaca taagctaccc
     1981 gaccaacaac ctccaaagtt gcaccaacga tatttactaa aacatcccct tctttcagtt
     2041 gtgatgaaat cattttctca ttgatatctt cgctaataaa ataatctacc gaagagtact
     2101 tatttaatag attattccta atatcattgg tttttaataa gacaaccccc tcttttaagt
     2161 tatcatctcg atctgttggt gttgtaccac ttttaatcag agaaacctca ttcagcgata
     2221 atggaaaatt aaaactcgga tggtttaagt attttttcaa aaagaaagta ctatccattc
     2281 gttccgaata acttgcagaa cgaaccttac tcaaataaac ctcgctcacc tctagcccat
     2341 ctaacaatgc ctgatattta gcagggtcaa atgggcttaa tcctttccca caaaagagag
     2401 cttttctttt ttagcaaatt caataaaggc ttctgcaatg ccgtcttggg tactattatc
     2461 gtgattaaat agatcgtgct ccacaattag gtgttgatgg ttgtctaatt tgagtgtgcc
     2521 atcagcgttt ttaacataga ttttatcgcc tgaattatct ttgctggatt tctgcattgt
     2581 ggcaaagaaa atcgggtaat cctctacttt cgggcaaagt tcatcgtgcc atttttgcac
     2641 aaatagtacg gaagtttttg tgccggtatg tggtttaaac acatttccgt gtaagcccac
     2701 aacagctaaa atgcggcaac gctctgcaat aaaatcacga atatatttat cgctggaatt
     2761 gttaaaacgc ccttgtggta gcacaatcgc cattcgtcca ccgtctttta agaaatctaa
     2821 attgcgttca ataaataaaa tatctcgtcc gactttggat tgctgttttc ctttgctatt
     2881 tttgcctaat tcatagcgag ctaatatacg agtttcttta atatcaccgg caaaaggcgg
     2941 atttgccatt agcacatcaa attggaaatc tcgattttca tttttagttt tacgtaattt
     3001 tcttaatttt ttccagcctt ctccatatac atcattccat tcttcttcct tagtaaaatc
     3061 ttcccaacgt tcataatcta aggtatttaa atgtagtacg ttggtttgcc catctcctgc
     3121 gattaagttt agggtacgag caacacgtac tgccttttca tcgaaatcaa tcgcaaagac
     3181 tttttctttc acataatctg tttgttcagg caatttttct tcagcagtaa ataagtgtga
     3241 gcgttctaat cctctcgctt taagttgttt ttcccaaacg tgaaaaatag aatgaactgg
     3301 aaaaccacag cttcctgctg cggtatcaat gactgtttct tcaggttttg gatcgagcat
     3361 ttttacgcac atatcaatga cgtaacgagg cgtaaagtat tgtcctttct ctcctttact
     3421 ggatttatta attaagtact caaatgcttc atccactaca tcaaggttag aattaaacag
     3481 ctttacttct tccaatgaag atacacaaat cgccaaatgc gaaggggaaa ggttgatttt
     3541 ggcactttca gcaaatacgc cttcccattt attttttgca cgatcaaata gagattgaat
     3601 ttttgccttt aattcacttt cggtatcacc atagttacga aactctaaat aacgactttt
     3661 attgcgtgta ctttccattt catcatagag tttagtaaaa ataagttgaa ataactcttc
     3721 aaaaacatca actccagcat tcgccagtac ctcatcttcc atttcaataa caagatcttt
     3781 caatgattta cgttgtttgg caattttgtc attatctatc agatcttgaa tagtccaacg
     3841 ttcttgtaat aaatcagaaa gtttttgttg agcattcgga atatcgggaa tatctttaaa
     3901 ataattagga tcacggcgat tatagtaaga aatactttcg ccatttgtcc atacaccaat
     3961 aggtgctcca gtcgcattac aataagattt taattgttct ttaccatctt ttaatttcgg
     4021 ctttttcagc tccaccataa tatagacagc gttaggatta tctctatcaa agatgacaat
     4081 atccgctcgt ttcttctcac gcccgaatac aacagaatat tctaattcca ttcgttcaaa
     4141 tggataatca tattcataat gcaaattcat taaatagagt tggcgtactg cttcttcagg
     4201 tgtgagctta atatcctttt tacgaacaag acattgaata tgaggaatat ctccattttt
     4261 ccctgatttg aggaaaatag attcctctaa tttttttata tacgcaggag aaaattgagt
     4321 taattgataa ttactgtctt ttaaaagttg tactaagtga taattttgtt tttcaatcat
     4381 tgttttgttc tcgatgataa cttctttgca taaaagagag ataaattttg catattttat
     4441 ctcaaaacca accgcttgta acaggcgggt taaaacccgc cactacatta aatgttttca
     4501 gcctgcgact tgacatcttg tttcatcgcc acacttaacc atttcttcgc cgtgagttcg
     4561 tcccagcctt tgcgtttggc gtaatccaac acctgatctt catcaatctt gccgagagtg
     4621 aagtagttgc tggtagggtg ggtgaagtac cagccgcaga cacttgctgc cggccacatg
     4681 gcatagcttt cggtgagttt catgccgatg cgttgttcca cctctaacaa gtcccaaatt
     4741 atctgtttct cggtgtgttc cgggcagctt gggtagccgg gcgcagggcg gatgccgatg
     4801 tattcttcac ggattaagcg tccgttgtct tcgtcttcca cggtgtagcc ccagactttg
     4861 gtacgtagct caaagtgtag gtattccgcc attgcttctg ccaagcggtc gccaacggct
     4921 tggagcaaaa tggcgttgta gtcatcgcct gccgctttgt agctttcaac taaatagtgt
     4981 tcttcaatgc cggcacaaac ggcgaacatt ccgaaccagt cttgttgtcc gctttctcgg
     5041 tcggcgataa aatcgcttaa acagaggttg tacgggcttt tgctgttttt gcctcgttcg
     5101 gattgttggc ggaggtggta ggatttgccg atacaagcgg tgcgatcttc gtttaaaatt
     5161 gcaatatcat cgccctcacg cacggcaggg aaaatgccca taatcccact tgggttgagc
     5221 ttgccgtttt gctcaaattc gtccagcacc cgttgggcat cgttatagac acggcgtgcc
     5281 tcttcgccgc cttccggata atcaaaggca tcaggataac cgcccattaa gccccagagc
     5341 ataaagaacg gcgaccagtc gataaatttg cgtagggtgg caatcggtac atttttgtac
     5401 tcgataatgc cggtctgttt tggcgttggc ggcacatagt ctgcccattc gccactaaat
     5461 ccgtcaaaac gattggctcg agcctcctca atagataaac cgttgcgaag tggtttgcga
     5521 acggcaaatt tacgctgaat ttcttcgtat tcggctttgg ttttttccca aaattcggct
     5581 tttgcctcag ggttcatcaa ggtcgcacag acggttacgc aacgtgaagc gttggcggta
     5641 tagactacgg ggtagttata tttcggataa agtttgatcg ccgtatgctc ttttgaggtc
     5701 gttgcgccgc caatcagcac cggaatatcg agcttcaagc ggttcatttc acctaaaaaa
     5761 tactccattt cgtccagcga tggggtaatt agtccgctta acccaatgag atcggctttc
     5821 tcccgaatag cagtttcgat aattacatcg gcaggcacca tcacgcctaa gtctatcact
     5881 tcaaagttat tgcactgcaa caccacgcta acgatgtttt tgccgatgtc gtgtacatca
     5941 cctttcacgg tggcgatcac cattttgccg ttgctcgatc ctttctgctt ggtggcgttg
     6001 atgtacggct ctaaataggc aacggactgt ttcattaccc gagccgattt caccacttgc
     6061 ggcaggaaca ttttgccgtc tccgaacagg tcgcccacca cgtccatacc cgccatgagc
     6121 ggcccttcaa tcacttccag cggagaggca aattgctggc gagcctcttc ggtatcttca
     6181 ataatgtagg tcgttatgcc ttttacgagg gcgtgtttta aacgctctgc cacaggtaaa
     6241 tttcgccact cggcggcact ttcatcggca ctttctactt ttacgccccg atatttttcg
     6301 gaaatttcca acaggcggtc ggtagtgtca tgacggtggt tcagcaccgc atcttcaatc
     6361 gcctctcgca gttcagggtc gaggtcgtca taaatcgcca actgccctgc gttcacgatc
     6421 cccatatcca ttccggcttt gatcgcatag tagaggaaca cggcgtgaat agcctcacgc
     6481 accacattgt tgcctcggaa agagaaagag acattcgaca ccccgccgga aattttggcg
     6541 tgtggcaagt ctcgtttaat ccgctcacag gcttggataa aatccacgcc gtagttattg
     6601 tgttcttcaa taccggtggc aatcgcaaaa atgttcgggt cgaaaataat gtcttccggt
     6661 gggaagccga gctgatcaac caaaatccga taagctcggg tacaaatttc taccttgcgt
     6721 tcttcggtat ccgcttgccc gacttcgtca aatgccatca ccaccaccgc agccccatag
     6781 cggcggcaga gtttggcttg gtgaataaat ttctcttcgc cctctttgag tgaaatggag
     6841 ttcactatcg gcttgccctg caccgtttgc aagcccgcct cgatcacctc ccatttcgag
     6901 gagtcaatca taatcggcac ttttgccgcc tcaggttcgg tagcaagaat gttgaggaaa
     6961 cgggtcatac attttttgga atcgagcaac gcctcgtcca tattcacgtc aatcacctgc
     7021 gccccgtttt ccacttggct gatggcaatt tcaatcgctt ccgcaaattt ttcttcttta
     7081 atcagcttct taaattttgc cgaaccggtg acgttattgc gttcgcccac attcacaaac
     7141 agcgaattat cgtcaatcgt cagcggttct aagcccgaca aacgcatagc ggttggaatt
     7201 tcaggtaatt tacgaggcgc aacgcctttg gttgcttcgg caaaggcttg gatatgctcc
     7261 ggcgtggtgc cacaacagcc gccgacaata ttcagccagc cgagttctgc ccactctttg
     7321 atgtaagtcg ccatctcttc cgcccctaaa tcgtacccgc caaaagcgtt tggcaagccg
     7381 gcattcgggt gaaccgaaac aaaagtctca ctgattttcg acatcatctc tacataaggg
     7441 cggagttcct tcggcccgag cgcacagttc aagccgaacg tcagcggttt ggcgtggcgg
     7501 agcgagttat aaaacgcctc cgtggtctgc cctgacagcg ttcgccctga ggcatcggta
     7561 atggtgccgg agatcattat cggcaatttc acgcccagtt catcaaacac cgtttcaatt
     7621 gcaaacaccg ccgctttggc attcagggta tcgaaaatgg tttcgatcat aatcagatcc
     7681 gccccacctt caatcaaacc acgggttgcc tcggcatagg cttccaccag ttgcataaag
     7741 gtaatgttac ggaaaccggg gtcattaaca tcaggggaaa tcgaacaagt acggttagtc
     7801 ggcccaagaa taccggcaac aaaacgaggt ttttcaggga tggagaattt atcggcggca
     7861 agacgggcaa gttttgcccc cacaagattc agctcataag caatactttc aagttcataa
     7921 tctgcttgag caatggtcgt cgcactaaag gtattagttt cgataatatc cgcaccggcg
     7981 gctaaatatt tctcgtgaat agcagaaatc aggagtggct gggtgagtgt gagtaggtcg
     8041 ttattgcctt taagatcgat ggtactgttt ttaaaacgtt cacctcggaa atcagattcg
     8101 gttagtttat atttttggat catcgttccc atcgcaccgt ctaagataag aatgcgttcg
     8161 gtaagggcat tttgaagtaa ttcggttcta tgctgcgtgt tcatactctg cttccagttt
     8221 tttagtttga ttaaaaggaa taatagaaat atgtcgcaag gctgtcaaac cttatctgtg
     8281 acgaaatgga aagggttaga gtcgccttta aaattatgct atattggctc agttcttccc
     8341 ctttttattt tgcaaaatgt aggaaaaata tgaccgcttg tcacgaaccc aaacgctcta
     8401 tctggcaaca gatttttact aaaaatatgt tgctttgtgt ttacaccggc ttttgttccg
     8461 gtttaccgtt gtttgtgtta attcagctaa tgccggcttg gctaaccagt gccaatttag
     8521 atattaaaac tattgccgcc ttcaccctga cctctttgcc ctacacgtgg aaattcctgt
     8581 gggctgcatt gttagatcgc tactttccac cttttttagg cagacgcaaa agctggattt
     8641 tcatttcaca aatcgggcta ttggtgattt tagccagctt tggcttgttc aacccagtgc
     8701 aagatatttc aattattgtt actctttctg tgctattagc ttttctttcc gccacgcaag
     8761 acattgtggt ggatgccttt cggcgtgaaa ttttatcgga taacgaactc gggttaggta
     8821 actctatcca cgttaatgct tatcgtattg cagggctgat tccgggtggg ctttcattat
     8881 ttttagccga tcactatgcg tgggataccg tatttctgat taccgctgct tttttagtgc
     8941 cttgcttatt cgttacgcta ataatcgctg ccgagccgaa tcataagcca atcgaccgtt
     9001 ctaagccgtt ttatatggcg tttgtcgatc cgttcaaaga gtttttcacc cgtaaaggcg
     9061 tggcaggagc gattgggctg attctattta ttttcctata taaattaggc gattcccttg
     9121 caactacgct acaaaccaaa tttattttgg atatgggttt tactaaatcg cacattgccg
     9181 gcattgtgaa aataacttca ctttggtgca gcattggcgg cggtattatt ggtggcgtgg
     9241 caatgttgaa attgggcgtt aaccgagcct tatggctgtt cggatttgta caattaatta
     9301 ctattttagg cttcgcttac cttgccagtt ttgagcattt ccctaccgaa agcattggag
     9361 ctgccgagct ttggaaatta ggcttagtga tggcaggtga atatctgggc gtgggtttag
     9421 gcacagcggc tttcgttgcc tttatggctc gtgaaactaa tcccgcttac actgcaatgc
     9481 agctcgccat tttcaccagc cttgctgccc taccaagcaa aatgttaggg gcatacacag
     9541 ggcatttagt ggaaatgatg ggctattacc aattcttctg gctctgtttc tttattggta
     9601 ttccgggaat gctaatgttg tttaaggttg ctccttgggg acaagctgaa tagctattca
     9661 taaaaataag attttttatt aaatatccga ccacttataa ccgattgaat tacctagtaa
     9721 tttagtcggt tattttttat ttatcctaaa atttaccctc acctaaaact aaatgatatt
     9781 gactttcatt tataataaaa atatatttag caccgttttc ataatagatt ttcatctact
     9841 cattttcatt ttgattgatt tggtggggta atcccacctt ttttatgctc ttaaaacaca
     9901 acactatgat tcaaataaat tccattagct actctgttga acaaaaccgt aaactgctaa
     9961 gcaatatttc cctcaattta agcaaggggc gtttatatgg cgcataacgg ctcgggtaaa
    10021 tcaacgttaa tgcgtttact aagcggagat ataacgccta ccagcggttc aattttagtc
    10081 gatggattac cacttcatca gctttctacc aaagaagcgg caaaacatat tgcctattta
    10141 ccacaacgtt tacctgaagc ggcggatttc ttagtgcagg aactggttgc tttagggcga
    10201 tttccatatc aaaaatggct acaaaaacca acagaatttg atgttcaaat tgttgagcaa
    10261 gcaatggaaa gcacctccgt tactcagttt gctaaacagc ctgtaaatag tctatcaggc
    10321 ggagaaaaac aacgagtttg gcttgctatg tgcttagccc aacaaacacc ctatttactg
    10381 ctagatgagc cattggctgc ccttgatatt gtttatcaag ttgaagtaat gcagcttatt
    10441 cgcaagctag tgaatgaaca aggtctaact gtcattatca ttattcacga tattaatctt
    10501 gcctcccaat tttgtgatga aattattgcg ttaaagcaag gcgaactctg tattcaaggt
    10561 tctgttgatg aaattatgca agaacagaaa ttacttgaga tcttcgggct aaaactgcac
    10621 ttgtttaacc accctgcagg cttacataaa gtggcggtat tatgatgttt aggcaataca
    10681 agcggttcat ttttctcttt attttgcaaa tttctaccgc atttgctcaa cctaatattt
    10741 ttacaccaga ttggtctatt gcctctgccc ttactgaaat gggaaatccg cccattgcga
    10801 tgggggataa gcgaatttat ccgctatggt cgcaccgccc tattcagcct aatagcgtgt
    10861 tagatattgg agcgcgttat cagcctaatc gcgaattatt agcacagttt cctgttgaat
    10921 tggtgctatc aaactttttc tacgctcact tggcttctgt ttacccgaaa gaaattccac
    10981 aaatagacgt gctatttgat ggtggcaata ctgaacctca gcaacattgg catacttacc
    11041 aaaaagccac tcgtatgatt ggaacagaga ttaaaaaccc taatgcggca gaagcatatt
    11101 taacgaaaac tgaacaaacg ttggctcaat gggggaaaga aatccttaac agtaatccag
    11161 atattgatta ctactctgtt gttcaatttg gctctccgag agagttacgc atatatgcgt
    11221 ctaattcaat gttccgtgta gcctttgatt tgatgggctt aaaacaagct gatttaggtg
    11281 tgggagatcg ctggggaaat aaacttattc ctgtgagtga tttagctaaa ttacccgaac
    11341 gcacctgttt aattgtcatc tcaccttttt ctaaaatgac gcaagcagat ttagaaaata
    11401 gctacatttg gcaacgttta ggatttggta aaaaccgttg tatgaaagta ttaccgcctg
    11461 tttggctctt tggtggggct gattccatct cgcactttgc tgagttttta cacaatgcaa
    11521 tgacacaagg agaaaaagag taatgaaatc atcattctta ttgattggct gtattctttt
    11581 atccttagta acagctgtta tccgtttaaa tatggtctgg gagtgggaat ggcagttact
    11641 actcataaat gttgatttat tgccaattaa tcaagctgcg gtaaaagcag ctcttttacc
    11701 tgaaatgaca acgtcatttt tagcaggcgg tttattggct atagccagca gtggcttaca
    11761 acatattgtc agaaataatt tagcgtcaga tagcacactt gccgtcagta gcggggctca
    11821 acttgcattg atgattgcgg ttatcttttt cccagccgcc gagctttttt ctagtttctg
    11881 gattgcgtta cttggctctt tagctgctat cgtactggtt ttatttattg ctaaagcctc
    11941 taagctcaat ccccttaccc ttattttagg gggattgatt gttaatattt tgtttggagc
    12001 tattgcctct ttactgaccc ttttctactt tgatttttta tttggcgtga tggtttgggg
    12061 aagtggctca cttttacaag atggttgggc aacttctatt accttagcga taacggtagt
    12121 agttgcattt tttatctttg tcttactctc tcgtccactc acaattttaa gtttagatga
    12181 tgaacaagct cgccgcttag gcgcgcctgt taatttacta cgctacttag ttatttttgt
    12241 ttgtgccgcc attacagcat tggttgtaag caaaataggt gtgattggct ttattggatt
    12301 tgcagtgcaa gtttggctca ttttgccaaa atacgacatt tattacttcg cctcttgatt
    12361 gcttttctag cgggcggatt tttactcttt tttaccaata atctcatcgg cattgttagc
    12421 agaatttacg acactctact acctgttggt gcatttaccg caacactagg cgcaccatta
    12481 ttaattttct tggtattacg ccaacgtaaa gcacaatttg aagcaagcaa tacagcatac
    12541 ttccccgtta aacgcctcaa ttcgtggaaa ctgccaatat tgttgttatg cgctggagtt
    12601 atcctatttt gtctattaca aatcattgct ccaacaatga atggctgggc tattagcatt
    12661 gatgaaaacc tgatgagttc ctaccgcttg cctcgtagtc taagtgcgat agcaacaggg
    12721 gcaatgcttg cggtaagtgg tagcctatta caaatcttaa cgagaaaccc aatggcaagc
    12781 cctgaagtat taggtgtgag ttcaggggca actattgctg cagtactgtc attcttactt
    12841 ttcccaacat tatctagcat tagcttcttg ttatttggtg tattagggag tttgactgtt
    12901 ctcgctctta ttatgtggct ctctcgtaaa ttacaaccat cagcgttaat gattacaggt
    12961 gttgctattg gagctttagt cagtggctta atggctatta ttcaactaag cggcagccct
    13021 cgtttaacgg cagttattag ttggctgtct ggctcaacct attacgctaa tccgaataca
    13081 gtttggattt tattatctgt tgcaatccta cttatcagtg ccactttact gtttatcaaa
    13141 cctttacgtt tgatctcact tggcgagacc gtttcttacc atttagggtt agaggttaaa
    13201 aaagtacaaa tgattgtatt acttttaatt gccctaatga gtgccgcctc tacacttgcg
    13261 gtagggccaa tgagcttcat tgggctaatg acccctcatt tagctaaaaa tttaggtgca
    13321 attacaccgg agaaacagat ccctatatcg gcattattag gggcaatgct aatgctcatt
    13381 gccgattggc tcgggcgtta tctaattttc ccttatgaga ttggggcagg cattattgcc
    13441 tctattctcg ggggtatcta tttcttactg ttactcaaac aacataaata attttttatt
    13501 cattacttag gagaaattat gaacacgcta tctaaagcga taaaacttgc cttatacagt
    13561 tctggtatag ggtttatctc aacagcttac gctgaaacag ttactcatct tgataccgta
    13621 gaagtaagtg ccgaaacgcc aaatgcctca tcggaagaaa ctggacgtta tgcacagaaa
    13681 aaagccaaag gctctaatgg aatggcattg agtgcgaaag acacgccaca aagcgtaacg
    13741 gctgtaacgc atcaacaaat cagagatcaa aatcttaata cgattgccaa agcacttgaa
    13801 gcaactcacg gtgtttctgt ttctttactt gacagaggac gctattcttt cagtgctcgt
    13861 ggttttggga ttgataaagt caaggtagat ggtatggatc tcaaagtaag taaataacca
    13921 atggacaacg ggcgaaaata caggcaacag cgtgttatac gaccgagtag aagttgtgcg
    13981 tggtgctaca ggcttaacta ctggggcagg cgatccttct gcaagtgtta atcttgttcg
    14041 taaacgagcc aatagcattt cccgttatac tattttagaa gctggaatcg ggcgttatgc
    14101 tgatttcaat acaatgattg accatagcca agcattgaat aattcaggat cagtaagagg
    14161 ccgctttatt gcagagcata aaaacggtaa tacgttcatt aaaaatgaaa aagaacgtta
    14221 caccacgctt tatggcaata ttgaagcaga cttaactgac actaccaaac ttgggttagg
    14281 tgtaagctat caaaaagaaa aacgtgatgc agcactttgg ggtggtttac ccgcattcta
    14341 tagcgacggt ggtgaaacta actggagcag aagcaaaaat gccagtccgg aatgggctta
    14401 ctgggataat gaatccgtaa actattttgc cgatattaca caaaaactag gcgaaaaatg
    14461 ggaacttgca ttaaaaggca attaccgtgt aggcaaacat aattcagaac ttttctattt
    14521 cagcggctca tcacttaatc gccaagatgg attaggttgg tcgccttggc cgggtaaatt
    14581 taaaaatgat aatacacaat ctaatgtgca gcttgatctt accggttcat tctctgcttg
    14641 gggattagaa cacgatgcgg caatcggtat tcaatacaat cgagcacatc gtaattccta
    14701 cgctgccgat aatagcacct ttgacggagc tttcgacttt aataattgga atggcattta
    14761 tgctagacca aactggggaa gtatgtctga aaaatactac caaaacttaa aagagttcgg
    14821 ggtgtatgtt tctacccgtt tacatcttac agatagactt tctatgcttc taggttctcg
    14881 tatttcatcg taccgcacag aaggcacttt ctatggttca acacaaaact tccacgctaa
    14941 cgatgtttgg acaccttatg caggattaac ctttgatatt aatccacaaa ataccgttta
    15001 tgtaagttat accgatattt tcaaaccaca aagtcaagtg gacatcaata acaaactact
    15061 ctctcctgtt acgggcgaaa cctacgaagc aggttggaaa gggagttatt tcaatgacaa
    15121 cttgcaaact caaattagcg tatttgaaac aagacaagat aatctagctc aatctgccgg
    15181 tattaaccct aatacattat tagcctacta cacagcctct aaaggtgcga aagttcgagg
    15241 ctttgaagta gaagcatctg gaaatgtaac tgaaaaatta aaactcagtg caggatatac
    15301 tcagtggaaa ggcgatgatg cttcaggtaa cccaattaac acaactcaac cacgcaaaca
    15361 atttaaactc tttgcaactt acgatatgaa ccgtttagtg caaggtttaa cggtaggagc
    15421 aggtgtaaac tggcaaagca gaatttatac caaacacgct acttatggcg aatatggtca
    15481 aaaagcttac actttagtga atttgatggc tcgttatcaa tttaatgaca acttctcagc
    15541 acagcttaac attgataact tattcgataa aaaatatcgt aacgccctca gctttagcca
    15601 atatagctac ggtgagccat tctatacacg cttaaattta cgctatgaat tctaattccg
    15661 tataacaagc ggtcaaaaaa ttaaaaaaat ttgcaatttt aggcagtaat cggtaaggtt
    15721 actgcctaag tgattttatt atttttagtt taattgaggt tttcaaatga aagtgatttt
    15781 attaggtgcg ccgggtgcgg gcaaaggtac gcaagctcag tttattatga acaaattcgg
    15841 tattccgcaa atttcaaccg gcgatatgtt ccgtgcagcg attaaagaaa gcactgagct
    15901 tggtaaacaa gcaaaagcat tgatggacga aggcaagtta gtgccggatg aattaacggt
    15961 cgccttagta aaagatcgta ttgctcaacc ggattgtgct aatggcttct tattagacgg
    16021 tttcccacgc accattccgc aagctgatgc gttaaaagag tcaggtgtaa aaattgattt
    16081 agtgttagag tttgatgtag ctgatgaagt cattgttgag cgtatgagtg gtcgtcgtgt
    16141 tcaccaacct tcagggcgta cttaccacgt ggtgtacaat ccaccgaaag tggaaggcaa
    16201 agatgatgtg actggtgagg atttaattat ccgccaagat gacaaacctg aaacggtatt
    16261 agagcgttta gcgatttacc acaaacaaac caaaccgtta atcgcctact acaccgcaga
    16321 agcagaagcc ggcaacactc gttatgagcg tttagatgga acaaaaccag tggaagaagt
    16381 aagtgctgag ttagcgaaaa ttttatctta aatggattat taaaatgaac aagcggtaat
    16441 atttttcgag aatattaccg cttgttcttt gcttaaacac aatatttggt gagcattaag
    16501 atatcatcat aaatcggtga aataaacact tccggatttt caatcttcat ctcctttggt
    16561 ttttcttcta gcttttctgg ctctttctta tctttattct ctaccggttg agtcgcttca
    16621 tttaccacac tagcttgagt tttatctgct acaggtatat ctattttgtt tggtgcttgc
    16681 tctactgctt gagaatccgc tttcagctct ttagaaactt cagtatttac gataggttct
    16741 tgtaagtttt ccgctactct ttcctctact tgtggcttaa tactttctgc ctctgctctc
    16801 ggtttataag atggatcaag taattgatgg ctaatatcca ttttcggatc aagccaaatt
    16861 gctacaatag catcattgaa agctttatta aacacatcag agactacttt atcatttaaa
    16921 ataaaataac ctctatcttc taatgcaata tagtgcaatg tatcttcagg cttaatatct
    16981 gggaaagttt ttctcaggtg ggtaataacc tcatctaact ctttttcagg tagcttaatg
    17041 cctaaattat tccaagttct tgctaaagaa accgcaaaat cacgcccctc ccacggtttt
    17101 ttatattgta gagtaagcat taaaggacgt gtaccttcta cataagtacc gctctcagta
    17161 aaaagcgtaa tatggtaaat attaaatggc ccccacgtat aattcacatc attaattttt
    17221 gtccaatttg catttgctgt tgataaaaat agagaaaaca acagcgaaaa gaccacttta
    17281 tagctcatta tttttgtgtc cttaaatcta aaattcctac tcattattat agccttaaat
    17341 atggctcaca cacattataa ttttcgatat aaattttgtg atcaagttca aaaaaataga
    17401 aagatttaac agtaaatcaa caaaaaaatg ctagtattta atcaagtaaa atttgcaacc
    17461 actattagga gttaaatatg tttccagaat ttcgtgatct cataacccaa ttaaagcaaa
    17521 acaattcaca ttttgctcgc ttatttgata aacataatga gctagaccag cgtattaaga
    17581 atatggaggc aaatattgaa ctggcaacac atgaagaagt tgaggcacta aaaaaagaaa
    17641 aattgcattt aaaagaccaa ctttatgcaa ttctaaaaca agaatcggct taacctaaag
    17701 taaaagctca gaaaatattc tgagctttaa tttcggtcat attagacaat attacagttt
    17761 taccggctca ataatttcgc ttgggtagca acccaacact ttgaggtagc tggtaacttg
    17821 ctccaattcc gccaatgctt tttgggtgtt ctcggaatga atatttgcct ccagctccac
    17881 ataaaacatc tcttcccaag gtttgccgta aatcgggcgg gattccagtt tcatcatacg
    17941 aatatgatga tttttgaata ccattaacgc atcgaccaat gcacccgcct gttgcgtggt
    18001 ggtcattaac agtaacgttt tggtttgtac ctgtggcgaa acctgcacag cctctttggc
    18061 aacaacaata aaacgggtga tattgtgagc ttgattagca atatcggttt tgatattcgt
    18121 caagccatac aattttccgc catcttcatt gcccaaggca acaatattcg gcttattcaa
    18181 gcgagccacc atttgcattg cgtgcgagct gctttcgcaa tatttgatat gtactttatc
    18241 tagcccggct aaaaattggc tacattgctg ggcaggctga gggtgggtgt aaatggtatc
    18301 cacctccgcc aaatcaaccg tgccgtttgc caatacacaa tgtttgattg ggtacgccaa
    18361 ttcacccact aaggttaaat cggtatgctg caataaatca tacacttcat tgatcgaacc
    18421 tgaagtcgtg ttttcaagcg gcagtacgcc aaaatcggct tcaccaaggc tgactttctc
    18481 aaatacttca ttaaaagaat ggcagcttaa ttccgccaat gtgccttgat attttttggc
    18541 aaactgtcga gatgccatat tagaataaga gcctcgcatt cccaaaaacg caatcgaaac
    18601 ctgctcttct ttttgtgcat tcaatttatt ttgcagataa ttttgctgag tcagcactga
    18661 atcttcaata atacgttgga aaatttgggt cacatattgc ggatcaagct ggtaattctc
    18721 cgcttcggca aaatttacca gttcttgaag caaaatcttt tcccgttcta aatctctcaa
    18781 gggtttttgt gtgatttctt tgctccgcac cacatcaaag gctaagcggt ggcgttctgc
    18841 cagtagcttt aataaattgc ggtctaagtt ggttatttgg gttcgaatat cggctaaatc
    18901 taaagacatt atttcactct ctgtcaggct aaatgctgaa aattataacg agttgcaaaa
    18961 gaaagaaaag acaagcggtc aaatttacaa aaaaatttgc aaatctaacc gcttgtaaaa
    19021 cgtgtttact ttattgagtg caatcaacag gctcggcatt acctacaatg cctttgtgtc
    19081 tgagcaaggc atcaagggtt ggcttacgcc cacggaagcg ttcgaacagc accattggct
    19141 cttctgaacc gcctcgggtt aagatattat ctaagaaaga ctgccccgtt tcagggttga
    19201 aaatcccctc ttcctcaaag cgtgaatagg catctgctga aagcacttcc gcccataaat
    19261 aactgtagta gcccgccgca tagccgcctg caaaaatatg cgagaaactg tgtggcgttc
    19321 tcgcccactc tacgcctttg gcaacagcga cttggtcttt cacctcttta agtaaggcta
    19381 acacttgtcc ttgtttgctc gggtcatatt cggtgtgtag gcggaaatca aacaagccaa
    19441 attctaattg gcgaagcaca aacattgccg cttggaagtt tttcgccgcc aataattgct
    19501 ctaatttcgc ttttggtaac ggctcgccgg tttcataatg ccctgaaata aaggctaatg
    19561 cctcttcttc ccagcaccag ttctctaaga attggcttgg cagctccact gcgtcccacg
    19621 gcacaccgtt aatgccggcg acatcgccca cgtcaatttc agttagcata tggtgaatgc
    19681 cgtgtccaaa ctcgtggaac aaagttgtca cttcatcgtg ggtaaacaat gccggtttat
    19741 cgccaatcgg tttattgaag ttacaggtta aatatgccac cggtttttgt aatgtgccgt
    19801 cagccaagcg tttttggttg atgcaatcat ccatccacgc cccaccacgt ttgttttcac
    19861 gagcgtataa atctaagtag aacgagccac gcaagcggtc atttttatca aaaatattga
    19921 aaaaacgtac atctttgtgc catacatcca catctttttg ttcttccaca cgcataccga
    19981 aaatgcgttt aattacttca aataagcctg ataatacgcg attttccggg aaatacgggc
    20041 gaagttcttc atcattgacc gaatacaatg cctgtttttg tttttcgctg tagaacggaa
    20101 tatcccataa atccaaatgt tcaatgccga aatgggcttt agcaaatttt ttcaaatcgc
    20161 ataattcatt tttgccttga gctttcgagc gagcggctaa atcgttcaag aaatctaata
    20221 cctgttgtgg attttctgcc attttggtgg ctaatgaata atcagaataa gtcttaaagc
    20281 cgagaagttg ggctttttcg tgacgcagtt ttaagatctc atcaatcacc gcactgttat
    20341 cccatttgcc tgcattcggg ccttgatcag aagcacgagt cacataagca cggtacattt
    20401 cctcacgcag tgctttgttt tcacaatacg tcatcaccgg caaatagctt gggatttcaa
    20461 gagtgaagcg atagcctttc ttacctttgc tttctgcgga taattttgcc gcttctaatg
    20521 ccgattccgg caagccttta agctgtgctt catcggtaat tacaatatcc caacccattg
    20581 ttgcatcaag tacgttgttg ctaaattgcg agttgagttc cgacaagcgt gcagaaattt
    20641 ccccgtagcg tttttgtttc tctgccggca gtgaaatgcc tgataattca aaatcttgta
    20701 agctgttttc aatcgccttt ttctgtgcaa ccgaataagt ttcaaactca gggctgtttt
    20761 ttaacttcac atagccttga tataaccctt gatgttgccc cgcccaagtg ctgtattccg
    20821 ataataacgg caagcacgct tggtaagcct cacgcaactc tggggaattt ttcaccgcat
    20881 tcaaatgccc taccggtgac cacgcacggg agaatttatc ctctgccatt gcttgtggca
    20941 tatagaaatt ttcccacgtc gggttttcaa tttgtgcgac tttttcaaca gtttcacggc
    21001 attctttgat caccgcttct accgccggtt tgatatgttc aggtttgatt tgtgagaacg
    21061 caggcaagcc tgtgtaattt aaaagagggt tagacattat tttttccttt tatggtcaaa
    21121 atgaaaattc gtatcaagat aatacacaaa gtgagagaga aaagaaaaca agcggtcata
    21181 tttcaataat tttttgcaaa aaaatcacaa aatatgaccg cttgtcttta gaatttgact
    21241 gtatgcccgt aactttcaat gattttttgg atacgctcta aatcctcttt aggcggtgac
    21301 attacccctt ccagctcata tttatagcct aaggtttccc atttgtgagc ccctaaacga
    21361 tgataaggca gaagttccac tttctcaatg ttatccattc cttgaataaa ctgccctaaa
    21421 cgatgggcag aatcatcgtc atcagtataa cccggcacga ccacatagcg aacccaagtc
    21481 ggtttattta atttgtgcag ataacgggcg aaatcaaggg tacgcttatt cgacaccccg
    21541 actaaatctt ggtgaacttc atcattgagc tgttttaaat ccagcaagac caaatcggtc
    21601 acttcaagca tttcatccac caccgggcta taatggcgaa caaaaccatt ggtatctaag
    21661 caggtattaa tgccttcagc cttacaggca cgaaaccaat cccgcacaaa ctccatttgc
    21721 aacaccgctt ccccacccga agctgttaca ccaccgccgg ttgctttcat aaaatgctta
    21781 taagtcgtga cttctttcat cagctcttca accgtaattt ccttaccacc atcaagatcc
    21841 caagtatcac gattatggca atatttacac cgcatcaaac agccttgcaa gaacagaata
    21901 aaacgaatcc ccggtccatc taccgtaccg caggattcaa aagaatggat acgtccaaca
    21961 acagacattt gtcacctcaa ccctcaaaaa attttgagaa attgtagcaa atttttatgt
    22021 tgttcgcaga aataaatcac accggtatat tttaagaaag gagaaagtca tactattttt
    22081 tgcctatttc aggaataaac ttttattaat ctattgactc catcaacata tcaaccaaat
    22141 atgtttaaat ttttgcattt tttaaagcta ttttgaccgc ttacaagcag tcggtttttc
    22201 tgaaaacttt gcaaacctag ccggcgtggt atttggcggc gacctctttt accagtaagt
    22261 cgaaatcgct ttcgtaggtg agatcctgct tgactcggta tttttcaaat tcgctgaggg
    22321 cgaaagattt agcaatttca gcggtaactt tgccggcatc ttgtaagatt tctcggtcgg
    22381 tggcggcaag aaagcggtta aggcgggttt cccagtctgc cattgtcatc ggaatttggc
    22441 gttctgccat atcttccgcc atatccaaat aggcagagac cagccgttgt agttgtgcta
    22501 attcattatc cgataaataa tttttggcaa ccaccacatc aaaggggtaa attttgcctt
    22561 gcggagcgtc tttccaattc gttagcccca tattcggctt ttcagcgttg gctcgtgcca
    22621 taatcagctc ggcggcggta tgcccgtgaa ttgcccaatg gagcttgttc tgcacggtgg
    22681 caaaaaagcg tttggtggcg gttgcggtgc ggtcgtagtc cacggcggta gcgtaaatgt
    22741 cggtgatttt ttggtagaac ttgcgttcgg ataaccgaat ttcccgaata cgagcaagct
    22801 gttcttcaaa gtattttttg cccaaaatcg tgccgtcatt tttcagccgt tcatcgtcca
    22861 tcgcaaagcc tttaatcgca aagctatgca cgatttcggt tgcccatttg cgaaactgca
    22921 ccgctcgctc ggaattgact ttataaccca ccgcaataat tgccgacaga ttataatgct
    22981 tggtgtggta gtttttgccg tcttgggcag ttatccaaaa aaattggata actgaatttt
    23041 cagctaactc attgtcacta aagatttttt tgagatgata gctaatggtt cgtacatcaa
    23101 catcatacaa caccgccatc attttttggc taagccatac attttcatcg gcgtaaacgg
    23161 catcaacttg gctttcgccg gtagctgtaa taaaagtgag gtattccgcc acagaggaac
    23221 gaattaaatc ttgcttagac atctctttct cccatataga acactgtaat tataaacaat
    23281 attacgaaag ctgtgtaaat gaatagccaa tttttcgagc gagatcacaa aaaaaccgct
    23341 tgcggcataa atgctacaag cggttgatta ttactcacaa aattgtttcc aattttgttc
    23401 gctcctacgg agccgtcggc aaagccaacg ttcaaaacgc aatgcgtttt gtggctaaaa
    23461 gttttgcaaa ttgtaattac atactttcag tgaaggtgcg ggtaattacg tccatttgtt
    23521 gctctttggt taaagagttg aaacgtaccg catagcctga aacacgaatc gttaattgcg
    23581 gatatttttc agggtgttct accgcatcta ataatgtatc acggtttaac acgttcacat
    23641 ttaagtgctg accgccttct acagttgctt cgtggtggaa gtagccgtcc attaagcctg
    23701 caaggttacg tttttgggct tcgtaatctt tacctaacgc atttggtacg atagagaaag
    23761 tataagaaat accatctttc gcataggcaa acggtaattt cgccacagaa gttaatgaag
    23821 ctaccgcacc tttctggtca cgaccgtgca ttgggttcgc acccggtccg aatggagcac
    23881 ctgagcgacg accgtccggt gtattaccgg ttttcttacc atataccacg ttagaagtga
    23941 tagtaagcac agactgagtc ggcgttgcat tgcggtatgt tttgagtttt tgaattttct
    24001 tcataaaacg ttcaactaaa tcaactgcaa tgtcgtccac acggttatcg ttgttaccga
    24061 attgcggata ttcaccctca atttcaaagt cggttgctac gtttttcgct acaccaacca
    24121 cttcgccagc tttgtttttg atttcaatat cggtacggat tggttttact ttcgcatatt
    24181 taatggctga aagtgagtct gccgctactg aaagccctgc gataccacac gccattgtgc
    24241 ggaacacatc acggtcgtga agagccatta atgccgcttc gtatgcatat ttatcgtgca
    24301 taaagtggat aatgttcagt gctgtcacat attgggttgc aagccaatcc ataaagctgt
    24361 ctaagcgggt cattacatca tcgtaatcta agtattcact tgtaattgct tcagttttag
    24421 gccctacttg gtcgcctgat ttctcatcaa caccgccatt gattgcgtat aacaaggttt
    24481 tcgctaagtt tgcacgagcg ccgaagaact gcatcatttt acccacgatc attggcgata
    24541 cgcagcacgc aatcgcatag tcatcgtttt ggaaatccgg acgcattaag tcatcgtttt
    24601 catattgaac tgatgaagta tcaatagaca ctttcgcaca gtagcgttta aatgcttccg
    24661 gtaattgttc agaccaaaga atagttaagt ttggctccgg tgacggcccc attgtgtaaa
    24721 gggtgtgtaa aatacggaag ctgtttttgg ttactaaggt acgaccgtct aaacccatac
    24781 cggctaaggt ttcggttgcc cacattgggt cgcctgagaa taattgatcg tattccggag
    24841 tacgcaagaa acgcaccata cgcaatttca ttactaaatg gtcgattaac tcttgggctt
    24901 cttgctcggt aattttgccg gcttttaagt cacgttcgat ataaatatct aagaatgaag
    24961 acacacgacc gaaagacatc gccgcaccgt tttgcgattt aaccgctgca aggtaagcga
    25021 aatatgtcca ttgcaccgct tcttgtgcat tggttgcagg acctgaaata tcaaaaccgt
    25081 agcttgcagc catctctttc attttgccta aagcacggtg ttgctcggca atttcttcac
    25141 gcagttgaat cgtggcttga atatcttcgc cggattctaa acgagcttgt aatgaggcaa
    25201 actggcgttg tttgtctttc attaagaagt ctgcaccata aagtgccata cggcggtagt
    25261 caccgataat acgaccacga ccataagcat ccggcaaacc ggtaattaca cctgatttac
    25321 ggcaacgtaa aatatccgga gtgtaaacat cgaatacccc ttggttatgg gttttacggt
    25381 attcggtaaa gatttgttct acttcaggtt taagctcacg gcgataaact ttgcacgaac
    25441 ctttcaccat attgatacca ccaaacggca taatcgcacg ttttaatgga gcatctgttt
    25501 gcagaccaac gattttttct aacgatttat caatataacc cggtgcgtgt gaggtaatgg
    25561 ttgatggcgt gtcgcagtca atatcatacg gttcgtgtgt tttgttttct actttgatca
    25621 tttccatcac atctgcccac aatttgctgg ttgcaggtgt tacttcagct aggaaagact
    25681 catcaccctc ataaggtgtg tagttttttt ggataaaatc acgtacattt acttcagttt
    25741 gccactcgcc tgcggcaaaa ccttcccacg ctttttgttg agcgtctgtt agttgagtca
    25801 ttttaagtcc tctgtgttag taagttaaaa cgggaaagcg gtgatttttt gcaaaaaatt
    25861 tgcaaaattt gaccgcttga atctgaaatc ttaatgcttt ctaatgtata agaaccactg
    25921 cattaaacca atgaaaaaca cgccaccgac aatattaccc agcgttgccg gaattaagtt
    25981 cttaaacaca aaatgagata catctaaatc ggcaaattgc gttgggtcaa cattaattgc
    26041 tgtccaaaat tcagggctgg caaagtgcga aatcgcaatc cccatcggaa tcataaacat
    26101 atttgccaca cagtgttcaa agccggaagc cacaaacatt gcaatcggta acatcataat
    26161 aaaggcttta tcggttaggc ttttacctgc ataagacatc cacaccgcaa tgcacaccat
    26221 aatgttacag aaaatgccta aacagaaagc ctcaaaccat tggtggtgaa ttttgtgctg
    26281 tgcggtattt aaaataacca aaccccattg ccctttggct gccataatct gaccactaaa
    26341 ccaaatcaac aatacaatgg aaatcgcccc aacaaagtta ccgaaataca ccactaccca
    26401 gtttttaaac atctgtaacc agttaattct ttggctggct ctggctacaa tcgtaagtgt
    26461 tgatgaggta aaaagttctg ccccaaacac cacacacata atcacgccga gtgaaaatac
    26521 caaaccacca atcagtttag ccatacccca aggcatttgg ctcgcaccca cttgggttgt
    26581 ggtataaaat acaaatgcta ttgcaataaa accgcccgca gtaatggcag agagaaagga
    26641 atataattga ttttttgttg ctttataaac cgcaccatct tctgcgattt ttgccatttc
    26701 agcaggagaa aacatcagac aaccttaaca atgagaattg aaaaaccgat atattatgta
    26761 gaaattatag acctcttgag ataatcttca aataaaaata ttacacaatc agaggtattt
    26821 cgatgtcttt ttttgatata gaacaaaatc cataaaaaac acaacattca agaaaattta
    26881 taactacatt ttaataacaa accaactaca attttatgac agaatatctc acttcctttt
    26941 tcagtttatt cttttccgaa caaaatcaac tctttactat gtttctgagt ggatttctaa
    27001 gcgctaccct cttacccgga aattctgaaa ttatcttcac taccttagca agccaacatc
    27061 tcatcactta tggctcttta tcctcatttt cactgttcaa tttactcttg gttgcaacct
    27121 taggtaatag tttaggtagc ataaccactt atgcgatagg gctattactc cctcgcccac
    27181 agaatactac caatcgttat tcacaatggg cattagccaa aagtgaaaaa tatggcgtgt
    27241 tagtcttgct ttttagttgg ttaccgattg taggcgatat tttctgtggc attgccggct
    27301 ggctacggtt tagcctttgg caaagcattc tctttattgt gattgggaaa ttgttacgtt
    27361 atctgttttt gctggcaact ctctattcgg tgttaccgca tattttatag aaaacaaaag
    27421 cggctgtttt gcaaaaaatt ttacaaaaac aaccgcttgt gctttataag tttcttaacg
    27481 cttcaatacg tttttctaac ggagggtggc tcataaacaa ctctttacca cggctaccgt
    27541 taatcataaa ggcagcaaga gagccttcca tttcttgcgg ttcgtgaaca cgttgcaagc
    27601 gttgtaatgc cgcaatcatt ttctctttac cgactaattg agcagagcct gcatctgcac
    27661 gaaattcacg ttggcgagag aaccacattg caatcattgt tgctaacaca ccaaacacca
    27721 tctgtaacac aatatctact acccagaaca ccagcgtatt ggtgcttgaa ttgccatttt
    27781 cgtcacgtga acttgccgcc attgtcgaaa taatacgagc taagaaaatg acgaaagtat
    27841 ttaacacgcc ttgtaataaa gtcattgtaa ccatatcgcc attcgcaatg tgcgccactt
    27901 cgtgtgctac taccgcttca gcttcgtctt tagtcattga attcagcaag ccggtgctga
    27961 ctgcaactaa agaattactt ttcgttgctc ctgtagcgaa tgcatttaca tcagccgaat
    28021 ggtaaatcgc aatgtccggc attgggatat tcgcttgctg agcctgacgt tgtacagtgt
    28081 tgaataacca ttgctccgct tcgttacgag gctgtgtaat cacctctgcc ccaaccgaac
    28141 gcaatgccat tgatttcgac ataaatagcg aaattaaaga cccactgaaa ccgaagacta
    28201 acgaaagcac caaaataccg gcagtgcttt gcccttgaat gccggtcact ttaaaaataa
    28261 ggtttaatac gatccctaaa acaaaggtaa tcgctaagtt agttaataaa aatagaatga
    28321 cacgttttgc cataatgttt tcaatctcca aaaatataga tgcaatgatt gcacgaataa
    28381 gataatgact ttagccttaa tttcaagtca ttatttacaa ttattcccac aaatttaact
    28441 gtttattcac ttttttctcg ggaaagtgaa cacttagacc gattaatcgc acctttcgtt
    28501 cctttcttcg ggtaaaaatt tgctgtagca actcgccaaa tcgctcatac gcaaagccat
    28561 cggtggttcg ttcaagcgtg gtttggctaa aatcatcaaa cttgagttta atgcctaact
    28621 ttttaaactc agttaatggc gtatcgcccc agtttcgttg caaccgaaaa accagtttgt
    28681 cgaataaatc tgccacaatc ttttccgctt gctcaagggt tgaaatatcg tgcaacagcg
    28741 tattttccac cgccagcgat tttctttcac gataaggctc taccgctcgt tcatcaatac
    28801 cgtggctaaa atcccaaagc cgttgcccga atttgccaaa cgctcggtaa ataaccgctt
    28861 tttctgcttg ctgaatatca ccacaggttt caaagccaag ctgttttaat ttttcattgg
    28921 ttactttccc cacacccgga atttttgcaa gcggtagatt tttcacaaaa ttttgcacat
    28981 catcaggcgt aatcacacat tgtccgttag gtttgttttg atcggaggta atttttgcta
    29041 aaaatttaag cggagcaact cctgccgagg cagttaaatg caattcattg aaaatatcat
    29101 tgcggattgc ttgagcaatc caagtggcgg agccaaaata gcgttcgcat tcggttacat
    29161 ctaaataggc ttcatcaagc gacaaggctt caatcacatc cgtatagcga tgaaaaattt
    29221 cgtgaatttg agcggaaacc gatttataca acgccatatt caccggcaat aaaattaaat
    29281 tcgggcattt cttcaacgca gttgccgttg gcattgcact gtgtaagccg aattttcgag
    29341 cctcgtaatt acaggttgtc agcacacctc gttgattagc attgccgccc accgccaccg
    29401 gcttaccgac caacgccggg ttttcccgca tttcgaccgc tgcataaaaa caatccatat
    29461 caatatggat aatttttcgc ttatgtttag cttgaatcga catttgcaat attttcccca
    29521 aaaacgaccg cttgcaacac aaataactgt atataaaaac agttttattt tatgccctta
    29581 ttgttagaat ttcaagttta aaaatagcga taaaaaggat aaaaaatgct ctacggttta
    29641 gccattgtgc tgattccact ttttctcggt tacttaataa ccctcaaaaa ccaccgccat
    29701 atggcaatag taaacagagt ggtcagcctc tgcctttact tgattttatt agtgatgggg
    29761 atttctctcg gacaaattga taacattctc accgaactgc cacagattgg cggtacggcg
    29821 tttagtttag tggtgatttt actcctttca aacattatcg gcttggtgat ttacgacaaa
    29881 ttacaaccga tgaaaagaga caaagtcaat caagatcaac ttccctcccg cctgcatttg
    29941 ttgattgatt cctttaaatt aatcggcatt accttattag gcgggatcat cggctatttc
    30001 accaaaggcg tggtggattt ccctctgcac gccagcacct atgtgttaga agtgatgatt
    30061 ttcggggtgg ggattcaact gcgaaacagc ggtattcccc tgcgtgaagt gttctttaac
    30121 aagcggggga tttatacctc gattgtaatg gtggcaagtt ccctgattgg tggcgtgatt
    30181 tcggcattca ccttagattt atcccttgct aaaggcttaa cctttgcctc tgcattcggt
    30241 tggtattccc tttcaagcgt attggtaaac gatgcttggg gcccgattta cggcagtatt
    30301 gcctttttta acgacatctc gcgtgaaatt ttatgcctgt ttttagtacc actgtttatg
    30361 cgtcaatttc cgtccaccgc agtcggcatt ggcggagcga cttcattaga ttgtatgctc
    30421 cctattattc aaaaatcggg cggtattcaa attgtgccgc tggcaatcag cttcggtttt
    30481 attgttaatt tagccgctcc attgttatta gccgttttta ttgggctgga aggataaatc
    30541 accgcttgtt tgcttttatt tatccatctt cgctgaattt tccgctataa tccttaagtt
    30601 ttccccgaaa cttgggatat ttattttcaa aaggataatt ttatgatgcg ttctcactac
    30661 tgcggtgcat taaaccgctc acaccttgga caaacagtta ccttaagcgg ttgggttcat
    30721 cgtgttcgta accttggtcg ttttattttt atgcaaattc gtgatcgtga aggcattgtg
    30781 caggtgtttt tcgatgagaa agatgaagca cttttcaagc aagcatcggc cttacgttct
    30841 gaggcgtgcg tgcaaattca aggtgaagtg attgcccgtg atgaatcgca aatcaataaa
    30901 gagatggcaa ccggtgaaat tgaagtgtta gtaaaaaatt tagtggtgta taacaacgct
    30961 gaagtattgc cgttagactt caatcaaaac aataccgaag aacagcgttt aaaataccgc
    31021 tatttggatt tacgccgccc tgaaatggca gaaaagctca aaacccgtgc taaaatcacc
    31081 agttttgtcc gccgttttat ggacgataac ggtttcttag acattgaaac cccgatgctg
    31141 accaaagcta ctcctgaagg tgcgagagat tacctcgtgc caagccgtgt gcataaaggc
    31201 aaattctatg ctctgccaca atcacctcag ctatttaaac agttgctaat gatgtcgggc
    31261 ttcgaccgtt attaccaaat cgtgaaatgt ttccgtgatg aagatttgcg tgccgaccgc
    31321 cagccggaat ttacccaaat agacgtggaa accagcttta tgactgccga agaagtgcgt
    31381 gcattaatgg aagcgatgat ccacggctta tggaaagaga ccttaggcgt tgatctcggt
    31441 aaattcccaa tgatgacgtg gaatgaagca atgacccgtt tcggttcaga caaaccggat
    31501 ttgcgtaacc cactggaaat ggttgatgtg gcagatattt taaaatcggt tgatttcaaa
    31561 gtatttagcg gtccggcgaa tgatccgaaa gggcgtgtag tggcacttcg tgtgccaaac
    31621 ggtgcagctc taacccgtaa aaatattgat gactacaccc aatttgtcgg catttatggg
    31681 gcaaaaggct tggcttggtt aaaagtgaat gatatgaaca caggtttaga aggcattcaa
    31741 agcccggttg caaaattctt aaatgaagaa gtgctaaaag ccttagttaa acgcttaaac
    31801 ttgcaaaaag acgacattgt attcttcggt gcggataact ggcacgttgc gactaacgcc
    31861 atcggtgcgt tacgcttaaa agtggggaac gatttaggct taaccgatac cacagcgtgg
    31921 aaaccgttat gggtgattga tttcccaatg tttgaacgtg atgatgaagg caacttatcg
    31981 gcaatgcacc acccgttcac ttcaccgaaa gaattatcgc cggaagaatt agtgcaagat
    32041 ccggaaaatg cggtggcaaa cgcttacgat atggtaatta acggctacga agtgggcggt
    32101 ggctcggtac gtattttcag ccagcagatg caacaaaccg tgttcagcat tttaggcatt
    32161 aacgaagaag agcaaaaaga gaaattcggt ttcttattag atgcgttaaa attcggtact
    32221 ccgccacacg caggcttagc cttcggttta gaccgcttaa cgatgttgat tacaggaact
    32281 gataacattc gtgatgtcat cgctttcccg aaaaccaccg ctgcagcgtg tttaatgaca
    32341 gaagcaccaa gctatgcgaa tccgaaagcg ttggaagagt tagcaatccg tacaattcca
    32401 caagagtaat cggtaggggc gaaacatttt tcgccctttt tatttaacaa gcggtcgaaa
    32461 aagtgaaaaa ctttgcaaaa gtaataatcg caaaattatt ctctaaataa cataataaag
    32521 actcttttct cttctctatg ttactactaa atatccccta ttattttaat tattacctta
    32581 tttgggtatt gagcagattt atgccgaaca agataatcgc gct
//
LOCUS       DANLRW010000015        32360 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.015, whole genome shotgun sequence.
ACCESSION   DANLRW010000015 DANLRW010000000
VERSION     DANLRW010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 32360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32360
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.015"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..259
                     /locus_tag="PXA71_000556"
     CDS             <1..259
                     /locus_tag="PXA71_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HDL5104697.1"
                     /translation="SLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIEVRGFGSFS
                     LHYRQPRLGRNPKTGESVLLGAKYVPHFKAGKDLKERVDLL"
     gene            296..583
                     /locus_tag="PXA71_000557"
     CDS             296..583
                     /locus_tag="PXA71_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HDL5104698.1"
                     /translation="MIKYILGILIVIAVIIVAVTIGANNDQLITFNYIFAQSELRLST
                     LVAILFGLGLILGWLVTGIFYLKIKFQNVALNRRVKRQAQQITELTTPKAE"
     gene            587..1783
                     /gene="lapB"
                     /locus_tag="PXA71_000558"
     CDS             587..1783
                     /gene="lapB"
                     /locus_tag="PXA71_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HDL5104699.1"
                     /translation="MLELLFLLLPIAALYGWYMGQRSAKKDQETASNKFSREYVTGLN
                     FLLSNQQEKAVDLFLSMLQKQESENHIASESQFEAELTLGNLFRSRGEVDRALRIHQT
                     LVNSPHYSFDQKLLAKQQLAKDFMVAGFYDRAENYYISLVDEPEFAKYSLSQLAVIYQ
                     KTREWKKAINVTEKRLRIEPDADKIPLSHFYCEYAQGVKFDDKAAFIESLNKALEYYP
                     QSTRASIILGDFYLEEGEYLRALSYFEQILVQDPDYISEVLGRIKQSYMALEDLNGYE
                     LFLIRANRVKHNSSVDIALTEFIEEKDGINAAHSKLYQQLSTYPNLITFHRFIRYQAD
                     FAEEGNGKESLVLLHNMVGNQIKRSFQYRCLNCGYQSYRLMWQCPSCNQWEKIKPVQS
                     IEGIIQ"
     gene            1807..2499
                     /gene="pyrF"
                     /locus_tag="PXA71_000559"
     CDS             1807..2499
                     /gene="pyrF"
                     /locus_tag="PXA71_000559"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDL5104700.1"
                     /translation="MNNKVIVALDYETEREALEFVDLVDPSLCRLKVGKEMFTTLGTN
                     FVKQLHERKFDVFLDLKYHDIPNTVARAVRSAADLGVWMVDLHASGGLAMMEEAKKIL
                     EPYGKEAPLLIAVTVLTSMEDLDLLQIGINASPMEQVIRLAHLAQRAGLDGVVCSPQE
                     VEVLRTHCGQDFKLVTPGIRPKGTDFGDQRRVMTPKQAVETGSDFLVIGRPITQAQDP
                     LAVLKSINQSIS"
     gene            2582..2893
                     /gene="yciH"
                     /locus_tag="PXA71_000560"
     CDS             2582..2893
                     /gene="yciH"
                     /locus_tag="PXA71_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HDL5104701.1"
                     /translation="MTLVYSTETGRIKSEVIKEERPKGDGIVRIQRQTSGRKGKGVCL
                     ITGLDLEDKALNSLASELKRKLGCGGSFKDGVIEIQGDNRGFIKQILEQKGFKVKLAG
                     G"
     gene            2996..5158
                     /locus_tag="PXA71_000561"
     CDS             2996..5158
                     /locus_tag="PXA71_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HDL5104702.1"
                     /translation="MWKKTLIAVFLASQYAFAVGTGKEPSKSYTETELKQLKNDWLAI
                     YQKELQYAENLRLKQRENFQQINYLADAAISQKNLSLSTEQIIQRLLLTLAGYPLEMK
                     AEWKLLNAKITLKQATESEVKAFISKYPDSLYQRQLQNLMFELLYREQKFPELLEYAQ
                     NVKQSSLADQCRLFSARYELAASKAQINPEVSQVTEQKAENAELLALVQEFDRFWLAT
                     PKLTSDCANLESYWRDQGLKTDEKMRLKAVELIKQNANAELANLAANVNNENLKIWLS
                     SVEKVANNPADLQNFIENQPLDSPFYADNKAIIQQLFAKYVRTLSENMENPSFQQYQT
                     WAEKYQLSSEEINGWKNAFITRFFDNPEPTFQFWRDEQIKLLKTDNLTERRLRMAIWQ
                     KADLNEWLVLLSQQAKEKAEWRYWAAKEEKNEAKRKVDFESLAKERGFYAMLAAQQLG
                     IVYQIPMLEVPELTQAQLELYANQLARIQELRELGQFDQARKIWIDWIKNIKPEAGEN
                     TPTKIQLALIKYAKDKNWYDLAVEGTIQTKAFDYLDLRLPNAYSDWFDLHLQDKKISK
                     TFAQAIARQESAWNAQAQSHANARGLMQLLPTTAQKTAKDNGLTFKDGNDLFQPFNNI
                     MLGTTHLMELNEKYPNNRILIASAYNAGAGRVEQWLKRSNGQLAMDEFIASIPFYETR
                     GYVQNVLAYDYYYQMLYSDINDKNGLKMFYQEELTRKY"
     gene            5207..5283
                     /locus_tag="PXA71_000562"
     tRNA            5207..5283
                     /locus_tag="PXA71_000562"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5241..5243,aa:Met,seq:cat)
     gene            5510..5971
                     /gene="rimP"
                     /locus_tag="PXA71_000563"
     CDS             5510..5971
                     /gene="rimP"
                     /locus_tag="PXA71_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDL5104703.1"
                     /translation="MATLEQKLEDLVLDSIEALGFELVGIECQRAGRFLTVRLYIDKE
                     GGVTIDDCSDVSRQVSAIFDVEDPIADKYNLEVSSPGLDRPLFTVAHYERFIGQDVVI
                     HLRIPMFDRRKWQGKIKQVEGDFITLTVENEDRQFAFGNIQKANLVPVFNF"
     gene            5992..7488
                     /gene="nusA"
                     /locus_tag="PXA71_000564"
     CDS             5992..7488
                     /gene="nusA"
                     /locus_tag="PXA71_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDL5104704.1"
                     /translation="MSKEILLAAEAVSNEKQLPKEAIFEALETALTIATKKSRDLDID
                     VRVVVDRKTGDFQTFRRWAVVENVNNMTREISLEAAQFEDPNVQLGDFIEDEVESIEF
                     GRVAIQTFGQVVKTKIREAEKTKIIDEFRSDLGKIILATVKKVTRDNIFLELQGKSED
                     IKGEAVIVREDMIPRENFRPGDRVRGVLYEIKPESKGPQLFVTRAKPVMLEELFKLEV
                     PEIGEGVIEIKGSARDVGSRAKIAVKTHDKRIDPVGACVGMRGARVQAISNELGGERV
                     DIVLWDENPAQFVINAMAPADVSSIVINDETHSMDIAVEAKNLAQAIGRNGQNVRLAT
                     QLTGWALNVMTVEELTKKSEEEDGKVINLLTSALEIDEEFAQVLIEEGFTSLEAIAYV
                     PVDTLTAIDGLEDEDLVEELQSRAKNAITKKALEEEKLLKSAQIEEKLLTLEGMDRHI
                     AFKLAEKQITTLEELAEQGVDDLADIEELSEEKAGELIMAARQICWFN"
     gene            7473..10040
                     /gene="infB"
                     /locus_tag="PXA71_000565"
     CDS             7473..10040
                     /gene="infB"
                     /locus_tag="PXA71_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDL5104705.1"
                     /translation="MLVQLSKEDNKMTEEKKTLSLGGARKASKVNTTTTSGKVKAVEV
                     KEKKPKIDAKALQEKAAKEAAAAKARAEKEAAEKLAKEKAEAEAKEKAAKKAAESTAS
                     KPISVPVMPSSKAKEEKPKAQQVQPKQEKAVDPEKEAKRKEEAELRRKQEELAQQKAE
                     MEAKRAAENARRLAEIAREEAEDNGNEDFDDERFTSSYAREAERDNDRRSEGNRGRNG
                     KGNVAKAKKGGREEDKNERSADRRNHKEVKGKGKQGKKGAALQQAFTKPAQVVKADVV
                     IGETITVAELANKMAVKATEIIKMMMKMGEMVTINQVIDQETAQLVAEELGHKVILRK
                     ENELEEAVLEDRDTHAEKVTRAPVVTIMGHVDHGKTSLLDYIRKAKVAAGEAGGITQH
                     IGAYHVETDDGKMITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTIEAIQ
                     HAKAAGAPLVVAVNKIDKPEANPDRVEQELLQHEVISEKFGGDVQFVPVSAKKGMGID
                     DLLEAIILQSEVLELTAVKDGMASGVVIESYLDKGRGPVATILVQSGTLNKGDIVLCG
                     FEYGRVRAMRDENGKDVESAGPSIPVEVLGLSGVPAAGDEATVVRDEKKAREVALYRQ
                     GKFREVKLARQQKAKLENMFSNMAAGDVAELNIIVKADVQGSVEAISQSLMELSTDEV
                     KVKIVGSGVGGITETDATLAAASNAIMVGFNVRADASARRVIENENIDLRYYSIIYEL
                     LNDVKAAMSGMLQPEFKQEIIGLAEVRDVFRHPKFGAIAGCMVTEGIVKRNNPIRVLR
                     DNVVIFEGELESLRRFKDDVSEVRNGMECGIGVKNYNDVKVGDQIEVFEVVEVKRTI"
     gene            10125..10505
                     /gene="rbfA"
                     /locus_tag="PXA71_000566"
     CDS             10125..10505
                     /gene="rbfA"
                     /locus_tag="PXA71_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDL5104706.1"
                     /translation="MSREFKRSDRVAQELQKEVAVILQREVKDPRIGMVTVSDVEVSR
                     DLAYAKIFVTFLFDNDAEAIKQGMQGLEKASPYIRTLLGKAMRLRIVPELRFIYDESL
                     VEGMRMSNLVSSVIKNDEEKHKED"
     gene            10508..11431
                     /gene="truB"
                     /locus_tag="PXA71_000567"
     CDS             10508..11431
                     /gene="truB"
                     /locus_tag="PXA71_000567"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDL5104707.1"
                     /translation="MSRPRKRGRDIHGVFLLDKPQGMSSNDILQKVKRIFQANKAGHT
                     GALDPLATGMLPICLGEATKFSQFLLDSDKRYLVTAKLGERTDTSDAEGQVVETKAVA
                     VTKSQILAALEKFRGDILQVPTMFSALKHNGKPLYEYARAGITVEREARPITIFELNF
                     IEYKAPFLTLEVHCSKGTYIRTLVDDLGEELGCGAHVTMLRRTAVADYPIEKMMSYAD
                     LQNLAENQPLAELDQHLLPMDTAVSALAKINLSSEQTKAVGFGQRIRFDNLNQLYGLV
                     RLYSEDEQFLGVAEITNDTVIRPNRMINLTE"
     gene            11434..12514
                     /locus_tag="PXA71_000568"
                     /pseudo
     CDS             11434..12514
                     /locus_tag="PXA71_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252783.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
     gene            complement(12552..13076)
                     /gene="tadA"
                     /locus_tag="PXA71_000569"
     CDS             complement(12552..13076)
                     /gene="tadA"
                     /locus_tag="PXA71_000569"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HDL5104708.1"
                     /translation="MFIKPNQTSCPLQISEQDIAFMQYALDLADLAEAKGEIPVGAVL
                     VDKNQQIIGRGWNQTIQLCDPSAHAEMQAIRQAGQTLGNYRLLDCTLYVTLEPCPMCA
                     GAILHSRIKRLVFGASDYKTGAVGSRYHLFEDYKMNHFLEVHGNVLGRECSQKISDFF
                     KQRRLQKKGDALIK"
     gene            complement(13158..14966)
                     /locus_tag="PXA71_000570"
     CDS             complement(13158..14966)
                     /locus_tag="PXA71_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDL5104709.1"
                     /translation="MTTESLTFADLGLPQPILDAVNEMGFVNPSPIQQECIPHLLAGR
                     DVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMK
                     GIRVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADE
                     MLRMGFIDDVETVMAELPETHQTALFSATMPEPIRRITRRFMKDPQEVKIKATERSAP
                     DIEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALN
                     GDMTQQAREQTLDKLRSGRLDILVATDVAARGIDIERISLVINYDIPLEEESYVHRIG
                     RTGRAGRSGRALLFVEPRERRLLRNIENLIKKPINEVAIPNHEILMEKRREKFKARIS
                     KQLEHHDLEKYRELLEDLFTADQDHEELAAAMMMLLQEKQKLILPPDPVVRAARSERG
                     RDRNERNDRRNGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIANEGDISSRYIGH
                     IKLYDKYSTIELPQGMPNHLVQHFAHKARVLSKPMQMTLLGSANSASNANPFEGRGRR
                     GNDRNDRGGRRDGGFNKDRKGGFKEKRFSEKRGRRD"
     gene            complement(15168..16091)
                     /gene="nlpI"
                     /locus_tag="PXA71_000571"
     CDS             complement(15168..16091)
                     /gene="nlpI"
                     /locus_tag="PXA71_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HDL5104710.1"
                     /translation="MVQLFKLFRIRFLLLNLISVLMLSGCTSRYADLVSIKNLALAEL
                     NPQLRFEQEAMVVRLSQVLEEAPLTPSEQADLYFERGVIYDSLGLWSLARYDFAQAIS
                     LNQRMAAAYNYMGLYLLLEGDYDSSIDAFNAVLELDREYSYTYLNRGLAFYYSGRYSE
                     AQRDLLHFYEEDKKDPYRALWLYFNELEFTPTEAKNNLQKRANNLSSDYWGTNIVNYF
                     LGKLNLAQVRAIMERDAKENSSQYAEILTETYFYLAKQQLKLDHKDEAISLFRLALAN
                     QVFNFVEYRFALFELSQIRGMTQTTPVVDKE"
     gene            complement(16172..18322)
                     /gene="pnp"
                     /locus_tag="PXA71_000572"
     CDS             complement(16172..18322)
                     /gene="pnp"
                     /locus_tag="PXA71_000572"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDL5104711.1"
                     /translation="MTPIVKQFKYGQHTVTLETGAIARQATAAVMASMDDTTVFVTVV
                     AKKDVKEGQDFFPLTVDYQERTYAAGRIPGGFFKREGRPSEGETLIARLIDRPVRPLF
                     PEGFFNEIQVIATVVSVNPQISPDLVAMIGASAALSLSGVPFNGPIGAARVGFINDQF
                     VLNPTTSEQKISRLDLVVSGTDKAVLMVESEADILTEEQMLAAVVFGHEQQQVVIENI
                     KEFVKEAGKPRWDWVAPEPNTDLINKVKALAETRLGDAYRIVEKQVRYEQIDAIKAEV
                     IAQLTAEDETVSEGTIIDIITALESQIVRSRIIAGEPRIDGRTVDTVRALDICTSVLP
                     RTHGSALFTRGETQALAVATLGTERDAQIIDELTGEKSDRFLFHYNFPPYSVGETGRI
                     GSPKRREIGHGRLAKRGVLAVMPTAEEFPYVVRVVSEITESNGSSSMASVCGASLALM
                     DAGVPIKAAVAGIAMGLVKEDEKFVVLSDILGDEDHLGDMDFKVAGTRTGVTALQMDI
                     KIEGITPEIMRIALNQAKGARMHILGVMEQAIPAPRADISDYAPRIHTMKIDPKKIKD
                     VIGKGGATIRALTEETNTSIDIDDDGTVKIAATDGNAAKAVMARIEEIVAEVEVNQIY
                     NGKVTRVVDFGAFVSILGGKEGLVHISQITNERVERVADYLTVGQEVQVKVVEIDRQG
                     RIRLTMKDINNTNEANAEETVAENVVETEQENNF"
     gene            complement(18584..19864)
                     /gene="phoR"
                     /locus_tag="PXA71_000573"
     CDS             complement(18584..19864)
                     /gene="phoR"
                     /locus_tag="PXA71_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HDL5104712.1"
                     /translation="MKVKLSLKHFLLELLLAAAVAGVFNLFFPAYFFWFSFCLLVLLI
                     WHHHTESSLLQLLRPNEQSGRSKVTTMEHLSQSAAFYHERLRQDKIKTLRLLSKLNKH
                     IQYLPDAIIICQENGEISWCNNVAQELFEFYWDKKSNKSIFNVIFYPEFKSYFRQQRH
                     HRPLVLLTHNKRYIELNLNRYDSNSRLIVARDVTSFVRLMHSRQTFLANMNHELRTPL
                     TILQGYLEMLENEPHNMALQQKALNAMKEQSQRMTNLLRQLSLLVKIEHSNDSEHNEV
                     QMSALISAIQKNTEILSQNQQILFDIEPNLTVWGDQEQLQSAVSNLIYNAIRHAGEGV
                     TIQICCQRDNQEPNTAIFSVQDDGIGIDAHHITHLTERFYRVDESRSNKTGGSGLGLA
                     IVKHALEQHHSTLEIESEAGKGSRFSFKLPLIKK"
     gene            complement(19867..20553)
                     /gene="phoB"
                     /locus_tag="PXA71_000574"
     CDS             complement(19867..20553)
                     /gene="phoB"
                     /locus_tag="PXA71_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006996031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon transcriptional regulator
                     PhoB"
                     /protein_id="HDL5104713.1"
                     /translation="MNNKILIVEDERAIREMLSLYLSKQYQVIEAEDYQSAINKLGEK
                     PELILLDWMMPGRSGIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYIT
                     KPFSPQVLLARIEAVWRRSYDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLL
                     HFLMTHPEKVYRREQLLDFIWGNDIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGS
                     GYRFSNHFQD"
     gene            complement(20637..21407)
                     /gene="pstB"
                     /locus_tag="PXA71_000575"
     CDS             complement(20637..21407)
                     /gene="pstB"
                     /locus_tag="PXA71_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HDL5104714.1"
                     /translation="MLPTDLETKLHINNLNFYYGDFHALKNINMRIAKNKVTAFIGPS
                     GCGKSTLLRTLNRMFELYPNQRATGEINLDGENLLTSDTDISIIRAKVGMVFQKPTPF
                     PMSIYDNVAFGIRLFEKLPKSELNDRVEWALTKAALWNEVKHKLNQNGDSLSGGQQQR
                     LCIARGIAVKPEVLLLDEPCSALDPISTMKIEELINELKHDYTVAIVTHNMQQAARCS
                     DYTAYMYLGELIEFGDTKQIFDKPKFRQTEDYIKGKMG"
     gene            complement(21417..22265)
                     /gene="pstA"
                     /locus_tag="PXA71_000576"
     CDS             complement(21417..22265)
                     /gene="pstA"
                     /locus_tag="PXA71_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005650601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDL5104715.1"
                     /translation="MKNYQNRRFYCRKIKNVLMLSLAYSAVLFGLFWLVWIIVTLLQK
                     GIPALSWELFTRPTPAPNETGGLRNAIVGSILIVSTATLIATPIGILAGTYLSEYGRY
                     TKLAKFTRFLNDVLLSAPSIIIGLFIYAIYVAQVKHYSGWAGSLALAVLVIPIVVRTT
                     DSMLNLVPNNLREAAAALGCPRWRVITMISYRAARSGIITGVLLAVARISGETAPLLF
                     TALSNQFASLDMNAPMANLPVVIYQYAASPFADWNTLAWAGAMLITLFVLSLNIITRL
                     YFSKTK"
     gene            complement(22262..23221)
                     /gene="pstC"
                     /locus_tag="PXA71_000577"
     CDS             complement(22262..23221)
                     /gene="pstC"
                     /locus_tag="PXA71_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDL5104716.1"
                     /translation="MHKHKIDNKCLNHPWVEGLFHHTTRFFALLVFALLVVVLVSLLL
                     GSWEALSRFGVSFLWENEWNPVNDRYGALVPIIGTLISAGIALVIAVPVSFGIATFLT
                     ELAPQWLKRPVGTAVEMLAAIPSIIYGMWGLFVFVPLFQEYVQPYLIDTFGQLPFIGM
                     LFSGAPFGIGLFSAGLVLAIMIIPFIASIMRDVFSVVPPLLKESAYGLGSTTWEVIWK
                     VVLPYTKTGVIGAIMLGLGRALGETMAVTFVIGNAFMLPDSVFSPSTSIASAIANEFN
                     EAGGLQKSALMSLGLILFLITSIVLAASRLLIARMGKQEGKRE"
     gene            complement(23302..24339)
                     /gene="pstS"
                     /locus_tag="PXA71_000578"
     CDS             complement(23302..24339)
                     /gene="pstS"
                     /locus_tag="PXA71_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005756281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HDL5104717.1"
                     /translation="MAKRFKLLTVLGISFSLSVAANAQTITGAGASFPYPIYAKWAGL
                     YEKETGNKINYQSIGSGGGQQQIIAKTIDFGASDDPMKGETLAEHKLLQFPAIIGGTV
                     PVVNIPELKSGELKLSGKVLADIFLGKITQWNDPAIVALNQDIALPAKTILVVRRSDG
                     SGTTFGWTNYLSKVSAEWKEKVGEGKSVKWPVGQGGKGNEGVAAYVKQLKYSIGYVEY
                     AYAKQNALAWVSMQNADGKFVQPSRETFAAAAANADWSQTAGMGVILTNEAGEKAWPI
                     TAASFILIHQHSDKPEQTKGVFKFFDWAFKHGKDAAAELDYVPLPDNVVEKIQTQWKT
                     EVKDGQGNSLY"
     gene            24524..26770
                     /gene="parC"
                     /locus_tag="PXA71_000579"
     CDS             24524..26770
                     /gene="parC"
                     /locus_tag="PXA71_000579"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HDL5104718.1"
                     /translation="MTTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLK
                     PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRY
                     PLVDGQGNWGAPDDPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPK
                     YLPARLPHILLNGTMGIAVGMATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGP
                     DYPTEAEIITPKAEIARMYEQGRGSIKMRAVWKKEEGEIVISALPHQASPSKIIEQVA
                     TQMRNKKLPMVDDIRDESDHENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNM
                     NMIGLDGKPAVKNLLTILNEWLSFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNID
                     EVIEIIRNEDEPKAELMARFNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELEKERD
                     ELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVTVI
                     LSEKGWVRCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLP
                     SARSQGEPLTGKITLPEGAVVQQVLMASPETKVLMASDSGYGFICTFADLVSRNKAGK
                     AVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPQLSKGKGNKIINISA
                     AAAKSGDEYLARLLVIKPTNSLVFVSGKRKITLKPSDVDNYRGERARKGSQLVRGLST
                     NSTVEIVE"
     gene            complement(26841..28193)
                     /gene="lysC"
                     /locus_tag="PXA71_000580"
     CDS             complement(26841..28193)
                     /gene="lysC"
                     /locus_tag="PXA71_000580"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HDL5104719.1"
                     /translation="MSHLSVAKFGGTSVANFDAMTSSANIVIADANTRVVVLSASAGV
                     TNYLVELANGCEKEHRDEVIAAVRQIQYNIIEKLQHQDAVKAEIDELLERIETLAESA
                     SLATSAALSDELISHGEMMSTKIFTQLLIERGHPAVWVDVRDVVATNSHYGKAAPNDE
                     KTQQQSDNVIKPLIASGKIVITQGFIGRDDEGKTTTLGRGGSDYSAALLAEVLNANDV
                     LIWTDVPGIYTTDPRVVPNAQRIDTMAFNEAAEMATFGAKVLHPATLLPAVRSNIPVY
                     VGSSKAPEQGGTWVTRDPQPRPTFRAIALRRNQILLTLSSLSMLHAQGFLANVFAILA
                     KHKISVDVITTSEVSVALTLDKTGSASSGADMLSAELLDELNAYCNVQVESDLALVAI
                     IGNNLHAQSGVAKKLFHTLENYNIRLISYGASSNNVCTLVKNAEADDVVRSLHKGLFE
                     "
     gene            28756..30186
                     /locus_tag="PXA71_000581"
     CDS             28756..30186
                     /locus_tag="PXA71_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIBC"
                     /protein_id="HDL5104720.1"
                     /translation="MSTLTYLQKIGRALMVPVAALPAAALLMGIGYWIDPDGWGTNSQ
                     LAALLIKSGAAIIDNMSILFAVGVAFGMSKEKDGAAALSGLVGYLVITTLLSPGTVAQ
                     LKGIAVDQVPAAFGKINNQFIGILVGVISAEIYNRFYQVELPKALSFFSGKRLVPIVV
                     SFILLYVWPVIFGALVSFGESIKDMGALGAGIYAFFNRLLIPVGLHHALNSVFWFDVA
                     GINDIPNFLGGAKSLAEGKAVIGVTGMYQAGFFPMMMFGLPAAALAIYHSAKPAKKMQ
                     VASIMFAAALASFFTGITEPLEFAFMFVAPVLYVVHALLTGLSVYIAASMEWIAGFGF
                     SAGLVDLVLSTRNPLAVQWYMLLAQGIVFAVIYYVLFRVVIQAFNLKTPGREEDSEVQ
                     TVNTVSRSEQAAKFVEALGGKENITSIDACITRLRLTLNDTAKADETKLKALGSKGNI
                     KLGENGYQVILGPEAEFVADAMKKLN"
     gene            complement(30250..30579)
                     /locus_tag="PXA71_000582"
     CDS             complement(30250..30579)
                     /locus_tag="PXA71_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HDL5104721.1"
                     /translation="MSEVNKSFHDMLEYVHLYRLKNKLHRETADNDRKIRDNQKRVLL
                     LDNLTQYITDEMSIEEVRAIISNMRDDYENRVDDYMIRNAELSKQRREIRQKMASHKQ
                     APTNKKA"
     gene            30775..32277
                     /gene="ppx"
                     /locus_tag="PXA71_000583"
     CDS             30775..32277
                     /gene="ppx"
                     /locus_tag="PXA71_000583"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HDL5104722.1"
                     /translation="MSSNIAPREFAAIDLGSNSFHMIVARIVNGSIQVLSRLKRRVRL
                     ADGLDENLVLSQDAIDRGIACLALFAKRLEGFSAENVKVVGTYTLRRAINNQAFLEQA
                     KAVFPYPISIISGQQEARLIYSGVSHTQPETGRKLVVDIGGGSTEMTIGDDFTPIRAE
                     SRHMGCVSFAKRFFPQGELTIERFDSAYQLAMEKIEDLMWEYKELGWDYALGSSGTIK
                     TVHQVLIANGYRDGLITESRLQKIIDICLEFKSLNEIKLRGLLDERADVLVPGLAILL
                     ALFHTFRIDVLRYSNGALREGVMYGLEKSFQVGDIRQRTAEALAEQFALDKQQAKRVE
                     HTALILFDQIKTWKNRRQVQDLRSMLKWASLLHEIGIVVNHNNVHRHSAYLIANRDLP
                     GFDFEQQTLLSVLMRYHLKGFKRSDIRSINRYQCRDVLTLVRVFRLAVLLNRSRQATV
                     VPKQLNLVIENNAWQLTFEQGFLANNPLISIDLEEEQKILASTNLQFAVS"
BASE COUNT         9605 a         6244 c         7226 g         9285 t
ORIGIN      
        1 gagtttagca tctaaaaatc caagtttacc aattaaaatg gtggagcatt gtgtaaaaga
       61 gcttttagag cagttaacgg ctactttaga agaaggtgaa aggatagaag taagaggatt
      121 tggtagtttt tctctacatt atcggcagcc gcgtttaggt cgcaatccca aaacaggaga
      181 aagtgttctt ttaggcgcga aatatgtacc acattttaaa gctggtaaag atctaaaaga
      241 gagagttgat ctgctttaag tcttattaat tcaataatcg tagtaaggag attatatgat
      301 taagtatatt ttaggtattt taattgtgat tgcagttatt attgtcgctg ttacgattgg
      361 agccaataat gatcaactta tcacctttaa ctatattttt gctcagagtg aattacgctt
      421 atcaacgtta gttgcgattt tatttggctt aggattgatt cttggttggt tggtaacggg
      481 tattttttac ttaaaaatta agtttcaaaa cgttgcttta aatcgtcgtg taaagcgcca
      541 agctcagcaa ataactgaat taacgactcc aaaggctgaa taatcaatgc ttgaattatt
      601 gttcctttta ttgcctattg cagcactata tggctggtat atgggacaac gtagtgcaaa
      661 gaaggatcaa gaaaccgcta gtaataagtt ctctcgtgag tatgttacgg ggttaaattt
      721 tcttttatct aatcagcagg aaaaggcggt ggaccttttc ctctctatgt tacaaaaaca
      781 agaatccgaa aatcatattg catctgaatc ccaatttgaa gcggagttaa ccctaggtaa
      841 tcttttccgt tcaagaggtg aggtagatcg tgccttacgt attcaccaaa cattagtgaa
      901 tagccctcat tattcatttg atcaaaaatt attagcaaaa cagcaattag ctaaagactt
      961 tatggttgca ggtttctatg accgtgcaga aaattattac atttcattag ttgatgaacc
     1021 tgagtttgct aaatattctt tatctcagct tgctgttatt taccaaaaaa ccagagaatg
     1081 gaaaaaagcg attaatgtta cagaaaaacg gcttcgaata gagccggatg cagataaaat
     1141 accgctttca catttttatt gtgaatatgc gcaaggggtt aaatttgatg ataaagcggc
     1201 atttattgaa tcgttaaata aagcgttaga atattatcct caatccacac gcgcttctat
     1261 aatattaggt gatttctatt tagaagaggg agaatatcta agagcattaa gctatttcga
     1321 acagattctt gtgcaagacc ctgattatat tagcgaagtg cttggacgaa ttaagcaaag
     1381 ctatatggct cttgaggact taaatggcta tgagttattt ctcattcgag caaaccgagt
     1441 aaaacataat agtagtgtag atattgcttt aactgaattt attgaagaaa aagatggtat
     1501 caatgctgca cattctaaac tataccagca gttgagtact tatccgaatt taattacttt
     1561 tcaccgcttt attcgctatc aagcagattt tgcggaggaa ggaaatggta aggaaagctt
     1621 agttttatta cataatatgg tgggaaatca gataaaacgc agcttccaat atcgctgttt
     1681 aaattgtggt tatcaaagtt atcgcttaat gtggcaatgt ccttcttgta atcaatggga
     1741 aaaaattaag ccggtacaaa gtatcgaagg tattattcaa taaagaaaga atctgaggaa
     1801 ttgaaaatga acaataaagt aattgttgcg ttagactatg aaactgaacg tgaagcatta
     1861 gaatttgtgg atttggtcga tccgtcgctt tgtcgtttaa aagtaggcaa agaaatgttt
     1921 acaaccttag gcacaaattt tgtcaaacaa ttacacgaac gtaaatttga tgtattcctt
     1981 gatttaaaat atcatgatat tccaaatacg gttgctcgag cagtacgttc tgctgctgat
     2041 cttggtgtgt ggatggttga cttgcatgct tctggtggtt tagccatgat ggaagaggca
     2101 aagaaaattt tggagcctta tggcaaagag gcaccattat taattgcagt gacggttcta
     2161 accagtatgg aagatttgga tttgcttcaa ataggtatta atgcttcgcc gatggaacaa
     2221 gttattcgtt tagcacattt agcacaacgg gctggtttag atggcgtggt atgttctcca
     2281 caagaagttg aggtattacg tacccattgt ggtcaagatt ttaaattagt gaccccagga
     2341 atccggccaa aaggaacaga ttttggggat caacgccgag tgatgacacc caaacaagca
     2401 gtagaaacag gctcagattt tttggttatt ggtcgtccta ttacccaagc tcaagatccg
     2461 cttgcggtat taaaatctat taaccaatct atcagttaat tcattgcatt tttaatgaag
     2521 gcggaaaaat ttccgccttt tttaatcaaa caagcggtta tttttgagga aaaatttgta
     2581 aatgacatta gtctattcaa cggaaacagg cagaataaag tccgaagtaa taaaagaaga
     2641 acgccctaaa ggggatggta ttgtgcgtat tcaacgtcaa acaagcggta gaaaggggaa
     2701 aggtgtttgc cttatcaccg gtcttgattt agaggataaa gccttaaatt ctcttgcttc
     2761 agagcttaaa cgtaaattgg gttgtggtgg ctcatttaaa gatggagtaa ttgaaatcca
     2821 gggcgataat cgaggattca ttaagcaaat cttagaacag aaaggtttca aagtgaaact
     2881 ggcaggtggt tgagttttaa acaattatca gctggcagtt tttaaataac ttcattttat
     2941 ttgaaacttc attcctactt ttctgcctaa aactcacgat taaggagaaa aactaatgtg
     3001 gaagaaaacg ttgattgctg tatttttagc aagccaatat gcttttgcgg taggaaccgg
     3061 gaaagaacca tcaaaaagtt atactgaaac agaattaaaa caattaaaaa atgattggtt
     3121 agcgatttat caaaaagagc tacagtatgc agaaaatttg cgtttaaaac agagagaaaa
     3181 ttttcagcaa attaattatt tggcagatgc agcgattagt cagaagaatt tatcactttc
     3241 aacggagcag ataattcagc gtttattact aaccttagcg ggttatccgt tggagatgaa
     3301 agctgaatgg aagctgctaa atgctaaaat aacgttaaaa caagccacag aaagtgaagt
     3361 taaagcattt atttcaaaat atcctgattc tttgtatcaa aggcagttac agaacttgat
     3421 gtttgagctg ctctatcgtg aacagaaatt tccggagtta ctggaatatg ctcaaaatgt
     3481 aaaacagagt agtcttgccg accaatgccg tttattttct gctcgttatg aactggcagc
     3541 aagtaaagct caaatcaatc cggaagtttc tcaagtaact gagcaaaaag cagaaaatgc
     3601 agaactgctt gctttggtgc aagagtttga tcgcttttgg cttgctacgc cgaaattaac
     3661 ttctgattgt gcgaatttag aaagttattg gcgggatcag gggcttaaaa ccgatgaaaa
     3721 aatgcgtttg aaagcggtcg aattaattaa acaaaatgca aatgcagaat tggcgaattt
     3781 ggcggcaaat gtaaataatg agaatttgaa aatctggcta tcttccgttg aaaaggtagc
     3841 gaataatccg gcagatttgc aaaattttat cgaaaatcaa ccgcttgatt ccccatttta
     3901 tgctgataat aaagcgatta ttcagcaact ctttgctaaa tatgtgcgaa ctttatcgga
     3961 aaatatggag aacccgagtt tccagcagta tcaaacgtgg gcagagaagt atcaactttc
     4021 cagcgaggaa atcaatggct ggaaaaatgc ttttatcact cgattttttg ataacccaga
     4081 accaacattc caattttggc gtgatgagca aatcaagttg ctcaagacag acaatttaac
     4141 tgaacgccgt ttacgaatgg caatttggca aaaagcagat ttaaatgagt ggctggttct
     4201 gctatctcag caggcgaaag aaaaagcaga atggcgttat tgggctgcga aagaggagaa
     4261 aaacgaagcg aagcgtaaag ttgattttga aagcttagct aaagagagag gcttttatgc
     4321 tatgttggct gctcaacaat taggcattgt ttaccaaatc ccgatgcttg aagtgcctga
     4381 attgacacaa gcacagcttg aattgtatgc aaaccaatta gctcgtattc aagagttgcg
     4441 agagctaggg cagtttgacc aggcaagaaa aatatggatt gactggataa aaaacatcaa
     4501 gccggaagca ggtgaaaata caccaactaa aatccagtta gccctgataa aatatgccaa
     4561 ggataaaaat tggtatgatt tggcggtgga aggtacaatt caaacaaaag cctttgatta
     4621 tcttgatttg cgattaccga atgcctattc ggattggttc gatttacatc tgcaagataa
     4681 aaaaatcagc aaaacgtttg ctcaggcgat tgctcgtcaa gaaagtgcgt ggaatgctca
     4741 ggctcaatcg cacgctaatg cgagagggct aatgcaactg ttaccgacaa cagcacaaaa
     4801 aaccgctaaa gataacggtt taaccttcaa agatggcaat gatctctttc aaccgtttaa
     4861 caatattatg ttaggcacaa cccatttaat ggagttaaac gaaaaatatc cgaataatcg
     4921 gattctgatt gcctctgctt ataatgcagg agcagggcgt gttgagcagt ggctgaaacg
     4981 tagtaacggg cagttagcaa tggatgaatt tattgccagt atcccgtttt atgaaaccag
     5041 aggctatgta caaaatgtgc tggcgtatga ctactattat caaatgctct atagcgatat
     5101 aaatgataaa aatggattaa aaatgttcta tcaagaggaa ttaacaagaa aatattaaaa
     5161 aatgcttgtg tttttgtgta gaaccgctat aatgcacccc atcagacgcg gggtggagca
     5221 gcttggtagc tcgtcgggct cataacccga aggtcgttgg ttcaaatccg gcccccgcaa
     5281 ccagttttaa gctcacagct ttggttaaag ttgtgagttt tgttttatat gctgtagcaa
     5341 atttgcaaaa aatttggcaa aaaagaccgc ttgttgtggt tgctacagca aaaaacaaac
     5401 cgcttaaagc cccacggttt cccgtctggg gcttttttgc ggaaattggt acagcattaa
     5461 cgtatcaaag ctggtttatc cggctttttt tatatttgga gattatgact tggcaacttt
     5521 agaacaaaaa ttagaagatt tagtgctcga ttctattgaa gcattaggct ttgaattagt
     5581 cggcattgaa tgccaacgtg caggccgttt tttaacggtg cgtttatata ttgataaaga
     5641 aggtggcgtg acgattgatg attgtagcga tgtcagccgc caagtgagtg cgatttttga
     5701 tgtggaagat ccgattgccg ataaatataa cttagaggtt tcttcaccag ggttagatcg
     5761 tccattattt accgttgccc actatgagcg ttttatcggg caagatgtag tgattcattt
     5821 acgcattccg atgttcgatc gccgtaaatg gcaaggtaaa atcaaacaag tagaaggtga
     5881 tttcatcact ttaacggtag aaaatgaaga tcgccagttc gcatttggca atattcaaaa
     5941 agcaaattta gttccggttt ttaattttta agataaaggt aaactgacaa aatgagtaaa
     6001 gagattttat tagctgcgga agcagtttca aacgaaaagc aattaccaaa agaggcaatt
     6061 tttgaagcct tagaaaccgc tttaaccatt gcaaccaaaa agagccgtga tttagatatt
     6121 gacgtgcgtg tggtggtaga tcgtaaaacc ggtgatttcc aaactttccg tcgttgggct
     6181 gtggttgaaa atgtgaataa tatgacccgt gaaatcagct tagaagcggc acaatttgaa
     6241 gatccaaacg tacaattagg cgattttatt gaagatgaag tagagtctat cgagttcggt
     6301 cgtgtggcga ttcagacttt tggtcaggta gtcaaaacca aaattcgtga agcggagaag
     6361 acgaaaatca ttgatgaatt ccgttcggat ttaggcaaaa ttattcttgc cactgtgaaa
     6421 aaagtaaccc gtgataatat tttccttgag ttacaaggta aatcagaaga tatcaaaggc
     6481 gaagcggtca ttgtgcgtga agatatgatc ccacgtgaaa acttccgccc gggtgaccgt
     6541 gtgcgtggtg tgttatacga aatcaagcct gaatcaaaag gacctcagct tttcgttacc
     6601 cgtgctaaac cggtgatgtt agaagagcta ttcaaattgg aagtgcctga aattggcgaa
     6661 ggcgtaattg agatcaaagg ttcagcccgt gatgtcggct ctcgtgcaaa aattgccgtg
     6721 aaaacccacg ataaacgtat tgacccggta ggggcttgtg tgggtatgcg tggtgctcgt
     6781 gttcaagcta tcagcaatga attaggcggc gagcgtgtgg atatcgtact ttgggacgaa
     6841 aatccggctc aatttgtgat taatgcaatg gctccggcag atgtaagctc tattgtgatt
     6901 aacgatgaaa ctcactcaat ggatattgcg gttgaagcga aaaatctggc tcaagctatc
     6961 ggtcgtaacg gtcaaaacgt gcgtttggcg acacaattaa ctggttgggc attaaatgta
     7021 atgaccgttg aagagctaac gaagaagagc gaagaagaag atggtaaagt catcaattta
     7081 ttaacttctg ctttagaaat tgatgaagaa tttgctcaag ttttaattga agagggcttt
     7141 acgtctcttg aagcgattgc ttatgtgccg gttgatactt taacggcgat tgacggttta
     7201 gaagatgaag atttagtcga agaattacaa tctcgtgcca aaaatgcgat cacgaaaaaa
     7261 gcgttagaag aagagaagtt attaaaatca gctcaaattg aagaaaaatt attaacgctt
     7321 gaaggtatgg atcgccatat cgcattcaaa ttagctgaaa aacagattac gactcttgaa
     7381 gaacttgcag agcaaggtgt tgatgattta gccgatattg aagaactttc agaagagaaa
     7441 gctggcgagc taattatggc agcacgccaa atttgttggt tcaactaagc aaagaggata
     7501 ataaaatgac agaagagaaa aaaacacttt cgcttggtgg cgctcgcaaa gcgagtaaag
     7561 tgaatacaac cacaaccagt ggtaaagtaa aagcggttga agtaaaagag aaaaaaccga
     7621 aaattgatgc aaaagcattg caagaaaaag cagcaaaaga agctgccgca gcgaaagcta
     7681 gagctgaaaa agaagcagct gaaaagttag ccaaagaaaa agccgaagct gaagctaaag
     7741 agaaagctgc aaaaaaagca gcagaatcga ccgctagtaa accgatttct gtgccggtaa
     7801 tgccaagcag caaagcaaaa gaagaaaaac cgaaagcaca acaggtacag ccaaaacaag
     7861 agaaagcggt tgatcctgaa aaagaagcta aacgcaaaga agaagctgag ttacgccgta
     7921 agcaagagga attagctcag caaaaagcgg aaatggaggc aaaacgtgct gcagaaaatg
     7981 cccgccgttt agcagaaatt gctcgtgaag aagcggaaga taacggcaac gaagattttg
     8041 atgatgagcg ttttacttct tcttatgcta gagaggctga gcgtgataat gaccgccgta
     8101 gtgagggaaa tcgtggtcgt aacggcaaag gcaatgtggc taaagcgaaa aaaggcggac
     8161 gtgaagagga taaaaacgaa cgcagtgcag atcgtcgcaa ccataaagaa gtaaaaggca
     8221 aaggtaaaca aggtaagaaa ggtgcagctt tacaacaagc ctttaccaaa ccagctcaag
     8281 ttgttaaagc tgatgtggtg attggtgaaa ctatcactgt ggctgaattg gctaataaaa
     8341 tggcagtgaa agcgactgaa atcatcaaaa tgatgatgaa aatgggtgaa atggtgacga
     8401 tcaaccaagt tatcgaccaa gaaaccgcac aattagtggc ggaagaactt gggcataaag
     8461 tgattttgcg taaagaaaat gagttagaag aagcggtttt agaagatcgt gatactcacg
     8521 cagaaaaagt aacccgtgca ccggtagtga ctattatggg ccacgttgac cacggtaaaa
     8581 cctcgttact tgactacatt cgtaaagcca aagtggcggc aggtgaagca ggtggtatta
     8641 cccagcacat tggtgcatac cacgttgaaa ccgatgacgg caagatgatc actttcttag
     8701 ataccccggg gcatgcagcc tttacctcaa tgcgtgcgcg tggtgcgaaa gcaactgaca
     8761 tcgttgttct cgtcgttgcg gctgatgacg gtgtaatgcc acaaactatt gaagctatcc
     8821 agcacgccaa agcagcgggt gcgccattag tggtagcggt gaataaaatt gataaaccgg
     8881 aagcgaaccc tgaccgtgta gaacaagagt tactacaaca cgaggttatt tctgagaaat
     8941 tcggtggcga tgtgcaattc gtgccggtat ctgcgaaaaa aggtatgggg atcgatgatt
     9001 tactagaagc cattattctg caatccgaag tgcttgaatt aaccgcagta aaagacggta
     9061 tggcaagcgg cgtggtaatc gaatcttact tagataaagg tcgtggccct gtggcaacta
     9121 tcttggttca atccggtacg ctaaacaaag gcgacattgt tctatgtggt tttgaatacg
     9181 gacgtgtgcg tgcaatgcgt gatgaaaacg gtaaagatgt tgaatcagca ggtccgtcta
     9241 ttccggtaga agtattaggc ttatcaggcg tgcctgctgc cggtgatgag gcaaccgtcg
     9301 tgcgtgatga gaagaaagcc cgagaagtgg ctctttatcg ccaaggtaaa ttccgtgaag
     9361 taaaactggc tcgtcagcaa aaagctaaac tggaaaatat gttcagtaat atggcagccg
     9421 gtgatgtggc agaattgaac atcattgtta aagcagacgt acaaggctcg gtagaagcga
     9481 tcagccaatc cttaatggaa ctttcaaccg atgaggtgaa agtgaaaatt gttggttcag
     9541 gtgtaggtgg tattaccgaa actgatgcaa ccttagccgc agcttctaat gctattatgg
     9601 tcggctttaa cgtgcgtgcc gatgcctctg cccgccgtgt gattgaaaac gaaaatatcg
     9661 atttacgtta ctactccatc atttatgagc tattaaatga cgtgaaagca gcaatgagcg
     9721 gtatgttaca gcctgaattc aaacaagaaa ttatcggctt ggcagaagtg cgcgatgtgt
     9781 tccgccaccc gaaatttggg gcgattgccg gttgtatggt gacagaaggt atcgttaaac
     9841 gtaacaaccc aatccgtgtt ctgcgtgata acgtagtaat ttttgaaggc gagttagaat
     9901 ctctccgccg tttcaaagat gacgtatctg aggtgcgtaa cggtatggaa tgtggtatcg
     9961 gcgttaaaaa ctacaacgac gtaaaagttg gcgaccaaat cgaagtgttt gaagtggttg
    10021 aagtaaaacg tactatttag cctaattttg tgtaggggcg tattgcatac gccctttgta
    10081 ttttttaggg cgtgaagcat cacgccccta taaaagagaa aaatatgtcc agagaattta
    10141 aacgtagtga ccgtgtggca caggagctac aaaaagaagt ggcggtgatt ttacaacgtg
    10201 aggtaaaaga tcctcgcatt ggtatggtga ctgtttctga tgtggaagta tcaagagatt
    10261 tggcgtatgc caaaattttt gtgactttct tatttgataa cgatgctgaa gctattaagc
    10321 aaggtatgca aggcttggag aaagcaagcc cctatattcg aaccctttta ggtaaagcaa
    10381 tgcgtttgcg tattgtgcct gaactgcgtt ttatctacga tgaatcgcta gtcgaaggta
    10441 tgcgtatgtc taaccttgtg tctagtgtaa tcaaaaatga cgaagaaaaa cataaagagg
    10501 actaattgtg tctagacctc gcaaacgtgg ccgtgatatt cacggcgttt tcttattaga
    10561 taaaccacaa ggaatgtctt caaacgatat tctgcaaaag gtaaagcgaa ttttccaagc
    10621 aaataaagcc ggacataccg gggcgttaga ccctctcgca accggaatgc tgccgatctg
    10681 tttaggtgaa gcgaccaaat tttcgcaatt tttgttggat tcggataaac gttatctcgt
    10741 caccgcaaaa ttaggcgagc gaaccgatac ttcagatgcg gaagggcaag tggtggaaac
    10801 caaagcagtt gcagtgacaa aatctcaaat tttggctgct ttggagaaat ttagaggtga
    10861 tattttgcaa gtgccgacaa tgttttcggc cttaaaacac aacggcaaac ccttgtatga
    10921 atatgcccga gcagggatta cggtggagcg tgaggctcgc ccgattacga tttttgaact
    10981 aaatttcatt gaatacaagg ctccattttt aacccttgag gtgcattgtt ctaaaggtac
    11041 ttatatccga actttggtcg atgatttagg cgaagagttg ggctgtggtg cacacgttac
    11101 gatgctacgc cgtacagcag tggcagatta tccgattgaa aaaatgatga gctatgcaga
    11161 tttgcaaaat ttagccgaaa atcaaccgct tgcagagtta gaccagcact tattgccgat
    11221 ggatacggca gtttctgcat tagcaaaaat aaatttaagt tcagagcaaa ctaaagcggt
    11281 gggttttggt cagagaatta gatttgataa tctgaaccaa ctttatggtt tggtacgttt
    11341 atattcagaa gatgaacaat ttctcggtgt ggcagaaatc accaatgata ctgtgattcg
    11401 tcctaaccga atgattaact taacggaata agaatgaaat cgataatttt taccttacct
    11461 ttagcgatta tcactttagc cttagccggt tgttcaagtg ataatcaaga aagttatgcc
    11521 ggcttaaact tagatgctaa atacagtaaa tctcgctcgg tcagtcattt taatgattat
    11581 gtgcattttc tgaaacagaa ggcagcaggg gcaggagtgt ctgcaaaaac cttaaatgct
    11641 cagaaattca ttcattacaa cgccagagcg gtgcagttag atcaacagca agctgcacga
    11701 agacgtgacc cgaatgtacc gcctccgcca ccaaatccaa gttttaaaca aagtattaac
    11761 tcaagcgaag gtggatcagg caagtgaacg ttggtatgaa tataatagcc agcttaccca
    11821 tgccagccaa aaatatgggg tacaaaaaga gtatattttg gcactttggg gaatggagag
    11881 cagctttggg cgtaaccaag gggattttga tgtactttcg gtgttggcaa ccctcgcctt
    11941 tgatggtcgc cgtgagaagt tatttacgca agaatttgtg aatgcgatga aaatgctcga
    12001 tgacggcaca attaaacgct atgaattgct tggatcttgg gcaggagcga tgggacaaac
    12061 tcaatttatg ccaacttctt acttaaccta tgcagctgat ggcaataatg acggtaaaaa
    12121 agatatttgg gagaatgaag ccgatgcatt tgcctcgatt gccaattatc tttcaacagt
    12181 aggttgggat aatcaactac cttggggtgt tgaggttaaa ttagcttcac cgatggattt
    12241 aagtttcgcc ggtcttgaaa ccaacaaagc gaaaacattg gcggaatggc aagccttagg
    12301 tatttattta gcttatccga atggacaaga atcggcaaaa ttagctcaat tacacggcaa
    12361 agaggtttgg ttgattcgtc cggataaaga agcgggaaga gcgtttttag tttctaataa
    12421 tttccgtact ttaatggatt ggaataaatc gaataacctt ggtatcagta tcggaaaatt
    12481 tgccgatcga attttagctt cagttggtca ataatcgaat aaaagcatag tagcaaagcc
    12541 tatctatgct tttattttat caaagcgtcg cctttcttct gcaaacgacg ttgcttaaaa
    12601 aaatcactga tcttttggct acattctctg cccaatacat tgccatgcac ttctaagaaa
    12661 tggttcattt tataatcttc aaacagatga tagcgtgaac ctaccgcacc tgttttataa
    12721 tcacttgccc caaaaaccaa tcgcttaatc cgactatgta aaattgcacc ggcacacatt
    12781 gggcaaggct cgagcgtaac ataaagggta caatctaaca gacggtaatt ccctaaagtt
    12841 tgtcctgctt gacgaattgc ctgcatttca gcgtgtgcag atggatcaca gagttgaatg
    12901 gtttggttcc agcctctgcc gataatctgt tggtttttat caaccagtac tgccccaacc
    12961 gggatttcgc cttttgcttc ggctaaatca gcgagatcaa gggcgtattg cataaaggcg
    13021 atgtcttgct cggagatctg aagtggacaa gaagtttgat ttggtttgat aaacatagtt
    13081 gcaaaaaatt gagttttttt gaccgcttgt aaaatgcccc acgagggtgg ggcatcgctt
    13141 acttcgctta gtgtcgttta gtcacgacga ccacgttttt cactgaaacg tttttcttta
    13201 aagccacctt tgcggtcttt attgaaaccc ccgtctcggc gaccaccacg atcattacga
    13261 tcgttaccac ggcgaccacg accttcaaat ggatttgcat tacttgcact gtttgcagag
    13321 ccaagtaatg tcatctgcat tggtttgctt aatacacgtg ctttgtgagc gaaatgttgt
    13381 acgagatgat ttggcattcc ttgcggcaac tcaatggttg agtatttatc ataaagtttg
    13441 atatgcccga tgtaacggct gctgatatcc ccctcgttgg caatcgctcc aacaatatga
    13501 cgaacttcca caccgtcttc acgccccaat tcaatgcggt ataaatccat tgccacacca
    13561 ttgttttcac ggtgttcacg accgttacga cgatcgtttc gctcattgcg gtcacgtcca
    13621 cgttcagaac gggcagcacg cacaaccgga tccggtggca gaatcagttt ttgtttttct
    13681 tgcagtaaca tcatcatcgc cgctgctaat tcttcgtggt cttgatccgc agtaaataaa
    13741 tcttccaaca attcacgata tttttctaaa tcgtgatgtt ctaactgctt agaaatgcgg
    13801 gctttgaatt tctcacggcg tttttccatt aaaatttcgt ggtttggaat cgccacttca
    13861 ttaattggtt ttttgattaa attttcgata ttgcgtaata agcggcgttc acgaggctca
    13921 acaaacagta aggcacgacc tgaacgaccg gcacgaccgg tacgtccgat gcggtgaaca
    13981 taagattctt cttctaacgg aatatcgtag ttaataacca agctgattcg ctcaatatca
    14041 ataccacggg cagcaacatc ggtggcgact aaaatatcta aacgaccgga gcgtaattta
    14101 tctaaggttt gctcacgggc ttgctgggtc atatcgccgt ttaatgccgc agtacggtag
    14161 ccgttgcgtt cacacaattc ggtaatatca atagtaccgg ttttggtgcg ggtaaagatg
    14221 atagcagcat caaattcttc tacttctagg aaacgcaata acgcatcgtt tttacggaag
    14281 ccgtttacca gccagtagct ttgttcaata tccggggctg aacgctcggt tgccttaatt
    14341 tttacctctt gcggatcttt cataaaacga cgggtaatac ggcgaatcgg ctccggcatg
    14401 gtggcagaga agagagcagt ttgatgtgtt tccggtaatt cagccattac cgtttcaaca
    14461 tcgtcaataa agcccatacg cagcatttca tcggcttcat ctaacacgat gaattttaat
    14521 tcggataaat ctaatgtgcc acggcggata tggtcaagaa tacgcccagg tgtacccact
    14581 actacttgtg agccttgttt taaagcacgt aattgaatgt cgtaacgttg tccaccataa
    14641 accgtcacta cacgaatgcc tttcatattt tttgcaaact gctcacaagc atcggctact
    14701 tgaatcgcaa gctcacgggt gggtgccatc accaacattt gcgggtggcg ttgtgttggg
    14761 tcaatttgtg ccaacagcgg cagcgagaat gcggcggttt taccgctccc ggtttgtgcc
    14821 ataccaagca catcacgacc ggctaataaa tgaggaatac attcttgttg aatgggtgat
    14881 gggtttacaa agcccatttc atttacagca tcaaggattg gttgaggtaa gcctaaatcg
    14941 gcgaaagtta aagattcagt tgtcataaaa aaccatttgt ttggaacgca caaagcagaa
    15001 aatatcgact atttttctgc acagccatta atgaaaatta tattgttgaa atttaggaag
    15061 aaatgaaata acaaagcaag tgatgcttta aaaatcccct gagtataagc ggttaaattt
    15121 acaaaatttt ttgcgaaatt aaccgcttgt attgtcctaa tctttcccta ttctttatca
    15181 acaacgggag tcgtttgagt cataccacga atttgtgata actcaaacag ggcaaaacga
    15241 tactcaacga agttaaacac ttgatttgca agagcaagac gaaagaggct gattgcctca
    15301 tctttatgat ctaatttgag ttgttgtttt gctaagtaga aatacgtttc tgtcagtatt
    15361 tctgcatatt gtgagctatt ttccttagcg tcacgttcca ttatagcacg aacttgagct
    15421 aaattgagct tccctaaaaa ataatttacg atatttgttc cccagtaatc cgaagaaaga
    15481 ttattagctc gcttttgtaa attattttta gcttctgttg gtgtaaattc cagctcatta
    15541 aaatagagcc ataatgctcg ataaggatct ttcttatctt cttcataaaa atggagaaga
    15601 tcacgctggg cttcagaata tctgccgcta taatagaaag ccaaacctcg attgagatag
    15661 gtgtagctat attcccgatc taattccaat acggcattaa acgcatcaat cgaactgtcg
    15721 taatcgcctt ccagcagcag atacagcccc atatagttat aagctgccgc catacgttga
    15781 ttgagcgaaa tggcttgagc aaaatcataa cgggctaacg accataaacc taaactgtcg
    15841 taaataacgc ctctttcaaa atagaggtct gcttgctcag agggcgttaa tggggcttct
    15901 tccaatactt ggctgagtct taccaccatt gcctcttgtt caaagcgaag ttgaggatta
    15961 agttctgcca atgctaagtt tttaattgaa accaaatcgg cataccgact ggtacagccg
    16021 cttagcatta aaacagaaat taaattcagt aataagaaac ggattcgaaa caacttaaaa
    16081 agttgtacca ttacagcata tccctcaatt aaggaaaatt aaaaactgaa taacggacac
    16141 tcaaagtccg ttattcgcct ttattattga actagaaatt attttcttgt tctgtttcta
    16201 ccacattttc agctacagtt tcttctgcat ttgcctcgtt ggtattattg atgtctttca
    16261 tcgtcagacg aatgcgtcct tgacggtcaa tttctaccac tttcacttgt acttcttgac
    16321 caacggttaa gtagtccgct acacgctcaa cacgttcgtt ggtgatttgt gaaatgtgga
    16381 ctaaaccttc tttgccacct aagatggaaa cgaatgcacc gaagtccacc acacgggtta
    16441 ctttaccgtt gtagatttgg tttacttcca cttcggcaac gatctcttca atacgagcca
    16501 ttactgcttt cgctgcattg ccgtcagttg ccgcaatttt caccgtaccg tcatcatcaa
    16561 tgtcgataga agtattggtc tcttcggtta aagcacgaat tgttgcaccg cctttaccaa
    16621 tcacatcttt gattttcttc ggatcgatct tcattgtgtg aatgcgtggg gcatagtcag
    16681 aaatatctgc acgaggtgcc ggaatggctt gttccattac acctaaaatg tgcattcttg
    16741 cacctttagc ttggtttaag gcaatacgca taatttcagg ggtgatccct tcgattttga
    16801 tgtccatttg cagcgcagtc acaccggtac gggttcccgc tactttaaag tccatatcgc
    16861 ctaagtggtc ttcatcacct aagatgtcag aaagtaccac gaatttctcg tcttctttca
    16921 cgagccccat tgcgataccg gcaaccgctg ctttgattgg cacacctgcg tccatcaacg
    16981 caagagacgc accacacaca gatgccattg aagaagaacc gttagattca gtgatttcag
    17041 acaccacacg cactacatac gggaactctt cagcggttgg catcacggct aatacgccac
    17101 gttttgctaa acgaccgtga ccgatttcac ggcgttttgg cgagccgata cgaccggttt
    17161 cgcccacaga gtatggaggg aaattgtagt ggaataagaa acggtcagat ttttcgccgg
    17221 tcaattcgtc aatgatttgg gcatcacgct ctgtgcccaa tgttgctact gctaatgctt
    17281 gggtttcgcc acgggtgaaa agagcagaac cgtgggtgcg tggtaacaca ctggtgcaaa
    17341 tatccaatgc acgcacggta tccaccgtac ggccgtcaat gcgtggttcg cctgcaataa
    17401 tacggctacg cacgatttgg ctctctaatg cggtgatgat gtcgatgata gtcccttcag
    17461 aaacagtttc atcttctgcg gtaagttgtg caatcacctc tgctttaatc gcatcgattt
    17521 gctcgtaacg aacttgtttt tctacgatac gataagcatc gccaaggcgt gtttctgcta
    17581 atgcttttac tttgttgatt aaatctgtat ttggctctgg tgcaacccaa tcccaacgtg
    17641 gtttgcccgc ttctttaaca aattctttga tgttttcgat tacaacctgt tgttgctcgt
    17701 ggccgaacac caccgccgct aacatttgct cttcggttaa gatatccgct tcagattcca
    17761 ccatcaacac ggctttgtct gtacctgaaa ccactaaatc taagcggctg attttttgct
    17821 cgctggtggt tgggtttaat acgaattgat cgttgataaa accgacacga gccgcaccga
    17881 ttggaccgtt aaacggcacg ccggataatg aaagggcagc cgatgcaccg atcatcgcaa
    17941 ccagatcagg actgatttgt gggtttaccg atactacggt cgcaatcact tgaatttcgt
    18001 taaagaaacc ttctgggaaa agtggacgca caggacggtc gatcaagcga gcgattaagg
    18061 tttcaccttc gctaggacgt ccttcacgtt tgaagaaacc gcccggaata cgaccggctg
    18121 cgtaagtacg ctcttgataa tctacggtta atgggaagaa atcttgccct tcttttacgt
    18181 cttttttcgc tactacggta acaaatacgg ttgtgtcgtc catacttgcc attactgctg
    18241 ccgttgcttg gcgtgcgata gcaccggttt ctaaggtcac ggtgtgctga ccgtatttaa
    18301 actgttttac aattggagtc attgaaattt tccttttaaa gaatttacta ttattgtcgt
    18361 tttatttctc taaattgcga ctagcaaaaa ggcttttaag taaaacattt ttgatagccg
    18421 cctctcaata acaagaaata aaacttgtct agtatagcgt gatttttata aaaaatcgcc
    18481 tattattttg atcttgcacc tcagttataa agaaattcaa aacttcagtg taaaatgggg
    18541 attagtttgt gaaaagcctt gtgaaaatag tttgattgca tcgctatttt tttattagag
    18601 gtagtttaaa actaaatctg cttcctttac cggcttcact ttcaatttcc agtgtggaat
    18661 ggtgctgttc aagagcgtgt ttgacaatag ccagacctaa accgctaccg ccggttttgt
    18721 tgctacgaga ttcgtccaca cgatagaaac gttctgtcag atgggtaata tgatgggcat
    18781 cgataccaat accgtcatct tgcacgctga aaatcgcagt attcggctct tgattatcac
    18841 gttgacaaca tatttgaatg gtaactcctt caccggcgtg ccgtattgca ttgtaaatta
    18901 aatttgatac agcgctttgg agttgctctt gatctcccca taccgttaaa ttaggctcaa
    18961 tatcaaacag tatttgctga ttttggctta aaatctcggt atttttttgt atggcggaga
    19021 ttaacgccga catctggacc tcattgtgtt cggaatcatt ggaatgctcg attttaacca
    19081 aaagtgagag ttggcgaagc aggttagtca tacgttgact ttgctctttc atcgcattga
    19141 gcgctttttg ctgtaatgcc atattatgcg gctcgttttc cagcatttcc aaataacctt
    19201 gtaatatggt aagaggtgtt cgcagttcgt ggttcatatt tgccaaaaag gtttgtcgtg
    19261 agtgcataag gcggacaaaa gaggttacat ctcgtgcgac aataagtctg gagttactgt
    19321 catatcgatt gagattcaat tcaatatagc gtttattatg agtcagcagt accaatgggc
    19381 gatggtgtcg ttgttggcgg aaatagcttt taaattcagg ataaaaaatc acattaaaaa
    19441 tgcttttatt tgattttttg tcccaataaa actcaaatag ctcttgtgca acattattgc
    19501 accaagaaat ctccccgttt tcttggcaaa taatgatcgc atcgggtaag tattgaatat
    19561 gcttatttaa ttttgataac agacgtaagg ttttgatttt atcttggcgt aaacgttcgt
    19621 gatagaatgc ggcactttga gataaatgct ccattgtcgt tacttttgac ctgccgcttt
    19681 gctcattagg tctgagtaac tgaaggagag aagattcggt gtggtgatgc caaataagta
    19741 gaaccagtaa acaaaaacta aaccagaaaa aataagcagg gaaaaacaga ttgaatacgc
    19801 cggcaacggc tgctgccagc aaaagttcca ataaaaagtg tttaagtgag agcttaactt
    19861 tcattattag tcctgaaaat ggttggaaaa acggtatccc gagccacgta cggtttgaat
    19921 ataacgctca aaaccatagg gttcaagact cttacgcaat cgccgaatat aagagtctac
    19981 cgtgcgatcc tcaacataaa tatcattacc ccaaataaaa tcaagcaact gttcacgacg
    20041 atacactttt tcagggtgag tcattaaaaa gtgaagcagt ttatattccg tgccgcttaa
    20101 tttcacttcc tgttcggcaa ccaaaacccg ttgtgcctgt tgatcaagaa tcaatccgtc
    20161 tatattgatg agattgcttg gcggatcata gcttcgccgc catactgctt caatccgggc
    20221 aagcaacacc tgtggtgaaa acggtttggt aatgtagtcg tctgcaccgg cattcagacc
    20281 ggtaatacag tcttcttcgc tactgcgggc tgttagcata atgattggaa ttttttcggt
    20341 ttcaggctgt ttttttaggt atttaattaa atggataccc gaacgccccg gcatcatcca
    20401 atccagtaaa ataagctcgg gtttttcgcc cagtttattg atagcacttt ggtagtcttc
    20461 cgcttcaatt acctgatatt gtttgctgag atagagactt agcatttcac gaatagcacg
    20521 ttcgtcttca acgatcagaa ttttgttatt cattcttcct ctccgatgcg gtgtgacaag
    20581 cggtcgattt atcgcagaaa tttgcaaatt ttttactaaa accgaccgct tgcagattac
    20641 cccattttac ctttaatgta atcttccgtc tgccggaatt ttggtttgtc gaaaatttgt
    20701 ttggtatcac cgaattcaat cagctcgcct agatacatat aagcggtata gtcagaacag
    20761 cgggctgctt gctgcatatt gtgggtaact atcgctaccg tgtagtcgtg cttgagttcg
    20821 ttgataagtt cttcgatttt catagtcgaa atcgggtcaa gtgcggagca gggctcatcc
    20881 agcagtaaca cctcgggttt cactgcaata cctcgtgcaa tacagagccg ttgctgttgc
    20941 ccgccggaga gactgtcacc attttggttt aatttatgct ttacctcatt ccataaagcc
    21001 gctttggtta atgcccactc tacacgatcg tttagctcgg atttcggcaa tttttcaaac
    21061 agacgaatac caaaagcaac attatcgtaa atggacatcg ggaatggggt cggtttttgg
    21121 aaaaccatac cgactttggc tcgaataatc gaaatatccg tatcggaggt gagtagattc
    21181 tctccatcaa gattgatttc ccccgttgca cgttgattcg ggtagagctc aaacattcgg
    21241 tttagggttc gcagtaatgt tgattttcca caaccggaag gaccgataaa tgcggtcact
    21301 ttatttttgg caatacgcat attgatattt ttcagagcgt ggaaatcgcc ataataaaaa
    21361 ttgaggttgt taatatgtaa ttttgtctct aaatccgttg gtaacatata gagtccttat
    21421 tttgttttgc tgaaatacag acgagtgatg atattaagag aaagcacaaa cagagtaata
    21481 agcattgcac ctgcccaagc caatgtattc cagtcagcga acgggctggc tgcgtattga
    21541 taaatcacca cagggaggtt tgccattggt gcattcatat ctaaagaggc aaactggttg
    21601 gataatgcgg taaacaatag cggtgcggtt tctccggaaa tacgggcaac agcgagcaac
    21661 acgccggtaa taatgccgga gcgggcggca cgataagaga tcattgtaat taccctccat
    21721 cgtgggcagc cgagagccgc agctgcttca cgcagattat taggcacaag attgagcata
    21781 ctgtcggtag ttcgaacaac aatcggaatc actaataccg ccaatgctaa tgagcctgcc
    21841 cagcctgaat agtgtttaac ctgtgcgaca taaatcgcat aaataaataa gccgataata
    21901 atagaaggag cagagagcaa cacatcattc aaaaaacggg tgaattttgc caatttggta
    21961 taacgcccgt attcgctcaa gtaagtgccg gctaaaatac cgattggtgt tgcaatcagt
    22021 gttgcggtac tgacaatcag tatagagccg acaattgcat tacgtaatcc tcctgtttca
    22081 tttggtgcag gagtcgggcg ggtaaacagt tcccaagaca gtgcagggat acctttttgg
    22141 agtaaagtaa caataatcca gaccagccaa aataagccaa ataatacagc ggaataggca
    22201 agacttaaca tcaagacatt ttttattttt cggcaataaa agcgtcggtt ttggtaattt
    22261 ttcattctcg ttttccttcc tgtttaccca ttcgtgcgat taataaacgt gaagcggcta
    22321 aaacaatcga agtaataagg aacagaatta gccctaggct catcaacgct gatttttgta
    22381 atccgccggc ttcattaaat tcattggcga tagcagaagc gatggaggtt gaaggggaaa
    22441 ataccgaatc aggtagcata aaggcattac cgatcacaaa ggtaactgcc attgtttcgc
    22501 ctaatgctcg acctaacccg agcataattg caccgattac tccggttttg gtgtaaggta
    22561 gcacgacttt ccaaataact tcccaagtgg ttgagcctaa accgtaagca gactctttca
    22621 gtaaaggcgg tacaacactg aaaacatcac gcataattga ggcaataaag ggaataatca
    22681 taatcgccaa taccaagccg gcactgaata gcccgatccc gaaaggagct ccgctaaaaa
    22741 gcataccgat aaagggaagc tgaccaaatg tatctatcaa atacggttgc acatattctt
    22801 gaaataaggg tacaaataca aacagccccc acataccgta aataatagag ggaatagccg
    22861 ctagcatttc taccgctgtg ccgacagggc gttttagcca ttgcggtgca agttcggtta
    22921 agaaagtcgc aatgccgaac gagaccggaa cggcaatgac taatgcaatg ccggcagaaa
    22981 tcaatgtgcc gataatcggc actaatgcac cgtatcggtc attcacaggg ttccactcgt
    23041 tttcccatag gaatgatacc ccgaatcggc ttaatgcttc ccaactgcca agcaataatg
    23101 aaaccagcac caccaccaac aaggcaaaaa ccagcaaagc aaagaaacgg gttgtgtgat
    23161 gaaataaccc ctctacccaa ggatggttta agcatttgtt atcaatttta tgtttatgca
    23221 tagtgacaac tcttttgcaa aatgttgtga aaaaacgacc gcttgttgtt agttaagctc
    23281 catacaagcg gtcgttttgc attagtagag cgaatttcct tgtccatctt taacttccgt
    23341 tttccattga gtttggattt tctctactac attatccggt agaggcacat aatccagttc
    23401 ggcagccgca tctttaccgt gcttaaatgc ccagtcgaag aatttaaata cccctttagt
    23461 ttgctctggt ttgtcgctat gttgatgaat caagataaaa ctggcggcgg taatcggcca
    23521 ggctttttct cccgcttcgt tggttaaaat aacgcccata ccggctgttt ggctccaatc
    23581 ggcgttagca gcggcagcag caaacgtttc acgggaaggc tgaacaaatt taccatctgc
    23641 attttgcata gaaacccaag ccagagcatt ttgtttagca taggcatatt ctacgtaacc
    23701 aatagaatac ttgagctgtt tcacataagc tgcgacacct tcatttcctt ttccgccttg
    23761 tccgaccggc catttcaccg attttccttc gccgactttc tccttccatt cggcagagac
    23821 tttagaaaga tagtttgtcc aaccgaaagt tgtgcctgaa ccgtctgagc ggcgtacgac
    23881 taaaattgtt tttgccggca gggcgatatc ttgattaagt gcgacaattg ccggatcgtt
    23941 ccattgtgta attttgccta ggaatatatc ggcaagaact ttaccggaca gtttcagttc
    24001 gcccgattta agttcaggaa tattgacaac cggtacagtt cccccaatga tggcgggaaa
    24061 ttgcaaaagt ttgtgttctg ctaatgtttc gcctttcatc gggtcatcag aagcaccgaa
    24121 atcaattgtt ttggcaataa tttgttgctg accgccaccg gaaccgatag attggtaatt
    24181 gattttatta ccggtctctt tttcatataa acctgcccat ttggcgtaga taggataagg
    24241 gaaagaagca ccggctcctg tgatggtttg agcatttgct gcgacagaaa gtgaaaaaga
    24301 aatgcctaaa acggtaagta gtttaaatcg tttggcaatc atattgttct ccttaaagtt
    24361 agcgtgagtt aatttcacgt gcttagtgta gaaaaagaat atgacaaaat gatgacaatg
    24421 gtaaaaaaat cagaaaaaac gaccgcttgt gtttcaggct agactaaaca ggctaaatcg
    24481 tagaaaatag ccctcgtttt tttaatataa atatcgataa aaaatgacca cagaaatcaa
    24541 ttatgaaggc attgaacaga tgccgattaa gcgttttacc gaagatgctt acctcaatta
    24601 ttcgatgtat gtaattatgg accgggcatt gccgtttatt ggcgatggct tgaaaccggt
    24661 gcaacgccgt attatttatg cgatgtcgga acttgggcta aacgcctcgg caaagtataa
    24721 aaaatcagcc cgtaccgtgg gggatgtatt aggtaaattc catccgcacg gtgatagtgc
    24781 ctgctatgaa gcaatggtgc taatggctca accgttctct taccgctatc cgttagtgga
    24841 cggacaaggc aactgggggg ctccggacga tccgaaatcc ttcgctgcaa tgcgttatac
    24901 cgaatcgaaa ctgtctaaaa ttgcagaaat tttattgggc gagttagggc aaggaacggt
    24961 ggattatcag ccaaattttg atggctcgtt ggaagaaccg aaatatctgc cggctcgttt
    25021 accgcatatt ttgttgaatg gcacgatggg gattgcggtg ggaatggcaa ccgatattcc
    25081 accacacaat attaatgaat tggctgatgc cagtgtgatg ttgctggata acccgaaagc
    25141 aacgcttgat gatgtactaa gcgtggtaca agggccggat tacccgacag aggctgaaat
    25201 catcacacca aaagcggaaa ttgccagaat gtatgagcag gggcgtggtt ctattaaaat
    25261 gcgtgcggtg tggaaaaaag aagagggtga aattgtgatt tcagccttgc cgcaccaagc
    25321 ctctccttca aaaattattg agcaagtagc aacccaaatg cggaataaaa aactaccgat
    25381 ggtggacgat attcgtgatg aatctgacca cgagaacccg attcgcattg tgattgtgcc
    25441 acgctctaat cgcattgatt ttgatgcgtt aatggatcac ctgtttgcga cgaccgattt
    25501 ggagaaaagc taccgagtca atatgaatat gattggctta gacggcaagc cggcagtgaa
    25561 gaatttgctg actattctca atgagtggct gagttttaga cgtaccactg tcactcgccg
    25621 cctgaattac cgattagata aaattttaaa ccgcttgcat attttagacg gtttgatgat
    25681 tgcatttctc aatattgatg aagtgattga gattattcgc aatgaagatg agccgaaagc
    25741 cgagttaatg gctcgtttta atctgaccga tgtgcaagca gaggcgatcc tgaacttacg
    25801 tttacgccac ttagccaaat tggaagagca tcaattacag gcggaaaaat ccgaactgga
    25861 aaaagaacgt gatgaattgc aactgatttt aggctcggaa cgccgtttga acagcctgat
    25921 caagaaagag attcaagccg atgccaaagc atttgccagc ccacgccgct caccattggt
    25981 tgaacgagcg gagtctaaag cgattgcgga aagtgacttg actccaaccg aagatgtgac
    26041 tgtgattttg tctgaaaaag gctgggtacg ttgtgcgaaa ggacacgata ttgatgttca
    26101 agccctaagc catcgagccg gagatggtta tcttgcccac gcaaggggta gaagtaatca
    26161 gcctgtggta tttttagaca gtacagggcg agcttatgct ctcgatccaa cttcactgcc
    26221 ttcggcacgc tcgcaaggcg aaccgcttac aggcaaaatc accctaccgg aaggtgcagt
    26281 agtgcagcaa gtgctaatgg caagtccaga aactaaagtg ctaatggcat ccgattcagg
    26341 ttacggcttt atttgcacct ttgcagattt agtttctcgt aataaagccg gcaaagcggt
    26401 tatttcttta accgaaaatg caaaagtact gccgccgcaa ttattggaaa atgatgaaaa
    26461 tttatcgctt gtagcgatga gtaatgttgg cagaatgttg gttttcccgg tgagtgaatt
    26521 acctcaactt tccaaaggta aaggcaataa aatcatcaat atttccgccg cagcggcaaa
    26581 atccggtgat gaatatttag cccgtttatt agtcatcaaa ccaaccaact cgctggtctt
    26641 tgtgtccggt aaacgcaaaa tcacattaaa accgagcgat gttgataact accgtggcga
    26701 acgagcaaga aaaggctcac agctagtgag agggcttagt accaattcaa cggtagagat
    26761 tgttgagtaa agagaagaag cggttagggg gtaaatccaa caattttgcc ccaaataacc
    26821 gcttgcaatg gagttattgc ttattcaaat aagcctttgt gaagcgaacg aaccacatcg
    26881 tctgcttctg catttttcac taaggtacaa acattattgc tgcttgctcc atagctgatt
    26941 aggcgaatgt tgtaattctc aagagtgtgg aataattttt tcgccacacc ggactgagcg
    27001 tgtaagttgt tgccgataat agcgactaaa gcgaggtcgc tttctacttg cacattgcaa
    27061 tatgcgttaa gctcatcgag taattccgct gataacatat ctgcacctga agaggctgag
    27121 cccgttttat ctagggtcaa tgcaacgctg acttcggaag tggtaatcac atcaaccgaa
    27181 attttgtgtt tcgctaaaat cgcaaataca ttcgctaaga aaccttgtgc gtgtagcatt
    27241 gaaaggctgg aaagcgtgag taaaatttgg ttgcggcgta atgcaatcgc acggaaagtc
    27301 gggcgtggtt gtggatcacg ggttacccaa gtgccgcctt gttccggtgc tttgcttgag
    27361 ccaacatata cagggatatt gctacgcact gccggtaata aggttgctgg gtgtaatact
    27421 ttcgctccaa atgttgccat ttctgccgct tcgttaaatg ccattgtgtc aatgcgttga
    27481 gcgttcggta caacacgagg atcggtggta taaatccccg gtacgtctgt ccaaatgagt
    27541 acatcgttag catttaatac ttctgctaac aatgcagcag agtagtctga accgccacgt
    27601 cctaaagtag tggttttgcc ttcatcatca cgaccaataa agccctgtgt aatcacaatt
    27661 ttgcctgatg cgattaatgg cttaatcaca ttgtctgatt gttgctgggt tttctcgtca
    27721 tttggtgctg cttttccata atggctgttt gttgccacaa cgtcacgcac atctacccat
    27781 actgccgggt gtccacgttc aattaataat tgcgtgaaga ttttggtgga catcatttcc
    27841 ccatggctga ttaactcatc acttaaggca gctgaagtag caaggctggc tgattctgct
    27901 aatgtttcaa tacgttctaa taattcgtcg atttccgctt taacggcatc ttgatgttgt
    27961 aatttttcaa taatattgta ttgaatttgg cggactgctg cgatgacttc atcacggtgt
    28021 tctttttcac agccgttagc aagttccact aagtaattgg ttacgccagc agaggcagaa
    28081 agtaccacca cacgagtatt tgcatcagca attacaatat tggcagaaga ggtcattgca
    28141 tcaaaatttg caacacttgt accaccaaat ttagccacag aaagatgaga cataataaaa
    28201 atttccttaa aacaaaaata gataaatatt gtgttagggg atattcggaa aggaaatttg
    28261 agtagattat acggttttat tgttgaacca attaatcaga gcactccatt taatatggtg
    28321 aaataaccta ttaaatgaca gctgatagga ttcaacctat tcagccgatg ttaattccag
    28381 tctagtgaat tcacacctcg gcaatcactc ccatcactta attctcaaac ggccctagtt
    28441 gcctaaaatc aagttgcctg agtgttgcac ctctcccgta atggcaagcc cattactctt
    28501 tttcaacagt attgaaaagt gtgcatagaa ataccgtttt attaatgttt tgtcaatgaa
    28561 tatttaggta atccaatgct atttaggtaa ttatttaaaa tatagcgata aaaagtaaac
    28621 atatttctaa tgttgaataa aaactcctaa aaaatatttt gaaatggatc acaaaaccaa
    28681 atttatttga ttgttcttta atcggttttt ttctatgctt aagttactca ttatgaggta
    28741 tttttggagg cttttatgag tacattaacc tatttacaaa aaattgggcg tgcattaatg
    28801 gtgccggttg ctgcattacc agcagcagca ttattgatgg gtataggcta ttggattgat
    28861 ccggacggct ggggaacaaa tagccaatta gcggcattgc tgattaaatc tggggcggca
    28921 attattgata atatgtctat tctatttgcc gtgggtgtgg catttggtat gtcaaaagaa
    28981 aaagatgggg cagcagcatt atccggttta gtcgggtatt tagtaattac cactttgttg
    29041 tctccgggga ccgttgctca gctaaaaggg atcgcagttg atcaagtgcc tgcagcattc
    29101 ggtaaaatca acaaccaatt tatcgggatc ttagtagggg ttatttcagc cgaaatttat
    29161 aaccgtttct accaagtaga gttaccgaaa gcattgtctt tctttagcgg taaacgattg
    29221 gtgccgattg tggtgtcatt tatcttgctt tatgtctggc cggttatttt tggtgcttta
    29281 gtctcttttg gggaatctat caaagatatg ggggcgttag gggcaggtat ttatgctttc
    29341 tttaatcgtt tattaattcc ggttggatta caccacgcat taaactcggt tttctggttt
    29401 gatgttgcag gcattaatga tattccaaac ttcttaggtg gggcaaaatc attggctgag
    29461 ggcaaagcag tgataggagt aacaggtatg tatcaagctg gtttcttccc gatgatgatg
    29521 tttggcttac ctgcggcagc attagctatt taccacagtg cgaaaccggc taagaaaatg
    29581 caagtagcct ctattatgtt tgctgctgct ttagcttcgt tcttcaccgg cattacggaa
    29641 ccgcttgaat ttgcctttat gtttgttgca cctgtgcttt atgtggttca cgcattatta
    29701 accggattat ctgtttatat tgcagcctca atggaatgga ttgccggttt cggttttagt
    29761 gcagggttgg tcgatttagt gttatcgaca cgaaatccgc tggcagtgca gtggtatatg
    29821 ttattggccc aaggtatcgt attcgcagta atttactatg tattgttccg agtagtgatc
    29881 caagccttta atttaaaaac gccggggcgt gaggaagata gcgaagtaca aacagtgaat
    29941 actgtttctc gtagcgaaca agctgccaaa tttgttgaag cattaggtgg taaagagaat
    30001 attaccagca ttgatgcttg tattacccgc ttacgcctaa ccttaaatga tacggcgaaa
    30061 gcagacgaaa ccaaattgaa agcgttaggg tcaaaaggta atatcaaatt aggcgagaat
    30121 ggctaccaag tgattttggg accggaagca gaatttgtgg cagatgcaat gaaaaagctg
    30181 aattaatctc tgcttaatca caagcggtct gatttgcata tttttttgca aatcagaccg
    30241 cttggctttt tatgcttttt tattggttgg tgcttgtttg tgagaggcca ttttttggcg
    30301 gatttcacgg cgttgtttgg aaagttccgc attacggatc atataatcat ctactcgatt
    30361 ttcatagtca tcacgcatat tggaaataat cgctcgaact tcctcgatag acatttcgtc
    30421 ggtaatatat tgcgttaggt tatctaataa aagtacacgc ttctgattat ctcgaatttt
    30481 gcgatcatta tccgccgttt cacggtgcag tttgtttttt agacgataaa gatgcacata
    30541 ttccagcata tcgtggaatg atttattcac ttcagacata tcaatctccc ttgatgtagt
    30601 gttgaattaa gtaagctcgt aaatcctatt ctttttccgt caattcgtca aaaaaattta
    30661 tcacatttta tgatttaaat taattctcgc gaataacgct aaatttgtag tgatatctag
    30721 ggctcaaaaa tggtaatatc ttacttattt cagttattgg tacagggttt cattatgtca
    30781 tcaaatattg ctcctagaga gtttgcagct attgatttag gctcgaacag ctttcatatg
    30841 attgtagccc gtatcgtaaa tggttccatt caagtgcttt cccgtttgaa acggcgtgta
    30901 cggctggcag atgggcttga tgaaaactta gtattaagcc aagatgcgat tgatagaggc
    30961 attgcttgtt tagctttatt tgcaaaacgt ttagaagggt tctctgcaga gaatgtgaag
    31021 gtggttggca cttatacctt acgtagagca atcaataacc aagcttttct ggagcaagcg
    31081 aaagcagtat ttccttaccc gatttccatt atttccggac aacaagaggc gaggctgatt
    31141 tattcgggcg ttagccatac ccaacccgaa actggcagaa aattagtggt agatattggc
    31201 ggtggttcaa cggaaatgac tattggtgat gactttaccc cgattcgagc ggaaagtcgt
    31261 catatgggtt gtgtgagttt tgcaaaacgc tttttcccgc agggggaatt aacgattgag
    31321 cgttttgata gtgcctatca gcttgcaatg gaaaaaatcg aagatttaat gtgggagtac
    31381 aaagagttag gttgggacta tgctttaggt tcttccggta cgattaaaac cgtccatcaa
    31441 gtgctgattg ccaatggcta tcgtgatggc ttaattacag aaagccgcct acagaaaatt
    31501 attgatattt gcctagagtt taaatcgtta aatgagatta agctacgagg cttacttgat
    31561 gaacgagcag atgtgctagt tccgggctta gctattcttt tagcactttt tcacactttt
    31621 agaattgatg tattacgtta ttccaacggg gctttaagag aaggggtaat gtatggtttg
    31681 gagaaaagtt tccaagttgg ggatattcgc caacggactg cagaagcgtt agctgagcaa
    31741 tttgctttag ataaacagca agcaaaaagg gtggagcata cggcgttgat tttatttgac
    31801 caaatcaaaa cttggaagaa ccgccgccaa gtgcaagatc tgcgttcaat gctgaaatgg
    31861 gcaagtttat tacacgagat tggtattgtt gtaaaccaca ataatgtgca tcgtcattct
    31921 gcttatttga ttgcaaaccg agatttaccg ggatttgatt ttgaacagca aacccttcta
    31981 tcggtattaa tgcgatacca ccttaaagga ttcaaacgct cggatattcg tagtatcaac
    32041 cgttaccaat gtagagatgt attaacgttg gtacgggttt tccggctagc ggtgctatta
    32101 aaccgttctc gccaagcgac tgtagtgccg aaacagttga atttggtgat tgaaaataat
    32161 gcttggcaac ttacctttga acagggcttc ttagcgaata atccactgat ttcaatagat
    32221 ttagaagaag agcaaaaaat attggcgagt acaaatcttc agtttgcggt ctcttaacat
    32281 ttaaatgaag gaagcgaagg cttccttttt cgtttattgc attccctttt gcgaacaagc
    32341 ggtcaaattt agctaatttt
//
LOCUS       DANLRW010000016        31514 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.016, whole genome shotgun sequence.
ACCESSION   DANLRW010000016 DANLRW010000000
VERSION     DANLRW010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 31514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31514
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.016"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(276..458)
                     /locus_tag="PXA71_000584"
     CDS             complement(276..458)
                     /locus_tag="PXA71_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104723.1"
                     /translation="MYQFGYLRTKIGTDTQRAMLWNCPTYVLIIPFLLNTSVKKQYHA
                     FWQKYHQHNNDVSFPY"
     gene            608..1648
                     /gene="selD"
                     /locus_tag="PXA71_000585"
     CDS             608..1648
                     /gene="selD"
                     /locus_tag="PXA71_000585"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020909986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:653..655,aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HDL5104724.1"
                     /translation="MSEPIKLTQFSHGAGUGCKISPKVLGTILQTQLEQFVDPNLLVG
                     NETADDAAVYDLGNGQAIISTTDFFMPIVDAPFDFGRIAAANAISDIYAMGGKPIMAI
                     AILGFPVNKLPAEVAQQIVEGGRFACQQAGIALAGGHSIDSPDPIFGLAVTGIVPTER
                     VKRNASAVAGCELFLTKPLGIGILTTAEKKGLLKPEHQHLASEVMCQINLIGSAFSEL
                     PEVTAMTDVTGFGLLGHLSEVCQGSGLRAEVDFEDIQVLDGTKEYIALGAVPGGTNRN
                     FDSYGHLISAMTDEQKAILCDPQTSGGLLVAVLPQAVEKVQQIANRANVPLFHVGRLL
                     EMEQGKPRIEVI"
     gene            1648..2121
                     /locus_tag="PXA71_000586"
     CDS             1648..2121
                     /locus_tag="PXA71_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HDL5104725.1"
                     /translation="MFKPNVTMACVVHCKGKFLFVEEIEYGKRTLNQPAGHLEKDETL
                     LEGASRELFEETGIRAEMANLVKIYQWQAPRSQTDFLRFLFSVELEEWLEPNPQDADI
                     TQALWLTLAEFEDYIQQQGQCARSPLVVQSVKDYLSGERYPLSLLNAFEWARNGK"
     gene            2111..3319
                     /gene="ubiH"
                     /locus_tag="PXA71_000587"
                     /gene_synonym="visB"
     CDS             2111..3319
                     /gene="ubiH"
                     /locus_tag="PXA71_000587"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HDL5104726.1"
                     /translation="MENKTTTQFDVVIVGGAVTGSVLALALSSFTHHKISIAIVEKSL
                     PDYEQQGGFDARSIALAEGSLQKMGQIRPLAGSSLGEMISEIGTPIQQIQVADKGHFG
                     KTTLKASEQNVAQLGMVVELAKFGRKLTACLAQQANITLFCPNQVVGIERSQQHCGLS
                     LKNGEKLSCSLLVAADGIQSQIAKQCGVETVKVRDYAQSAIIANVELSESHQNQAFEY
                     FTPQGPFALLPLSGNMMSLVWCVKEPNELIQLSDSEFLARLQQQFGWKLGQFVRVSKR
                     FVYPLILQKAQSHIHHRLAVVGNAAQMLHPVAGQGFNLGLRDLTTLAELVALAFNQGK
                     DIGEFSLLSTFENERTQDQARMINATSGLISLFCCEMLPVQVVRNLGLLTVSHSKIAR
                     DFVANQALGW"
     gene            3582..4814
                     /locus_tag="PXA71_000588"
     CDS             3582..4814
                     /locus_tag="PXA71_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-xanthine permease"
                     /protein_id="HDL5104727.1"
                     /translation="MTTENMSTPKQAFIGLQMLFVAFGALVLVPLITGLDPNVALLTA
                     GVGTLIFQICTKRQVPVFLASSFAFIAPIQFGVQQWGIPVTMGALLCSGFIYMALSAL
                     VKAKGVNILHKYFPPIVIGPVIMVIGLGLAPVAVDMATGKSANIAYNTAIIVSMITLV
                     TTLIVAVFAKGLLKLVPILAGLTVGYILSVFMGLVDFTKVVEAPWFSLPKVSAPEFKL
                     DAILYLLPIALAPAVEHLGDVMAISQVAGKDFMKKPGLHRTLLGDGLATSAAAALGGP
                     PNTTYSEVTGAVMLTKNFNPKIMTWAACWAIAFSFCGKIGAFLATIPTFVMGGIMMLL
                     FGAVAVVGINTLIKAKVDLSIPRNLCIASVVMTFGIGGMLINIGEFSLKGISLCALVA
                     IVLNIVLPKEKVEDSAAH"
     gene            4881..5867
                     /locus_tag="PXA71_000589"
     CDS             4881..5867
                     /locus_tag="PXA71_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDL5104728.1"
                     /translation="MQKLTFSPPLLNTPCPWCSELESLRELYACEYTGAVTTRTSMPQ
                     PYPHDWAKNQYVLFDSNAQKTASVNTQDATSLQTASLNTIGLSPNNLDTTISFVRTIS
                     NELTAPSSKPFIISVFGSPEEVGECYEKIVAFQTEVKMPLAMEINISCPNIPGEISPA
                     YSAEELSHYLHALQTSLKKLAQGDNTLPIGIKIPPFTYQNQYDELIKGLLQAVENGEN
                     LPISFITSTNTLGSSLVLNAGKAVLNSEVGTGVGGMAGTAIHALSLGNVYTIRQMLDQ
                     EPKLKHLQIIGVGGVNDKAGFERMKSVGADFVGLATALGVKGIGVFKEILSE"
     gene            complement(5908..6318)
                     /locus_tag="PXA71_000590"
     CDS             complement(5908..6318)
                     /locus_tag="PXA71_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2251 domain-containing protein"
                     /protein_id="HDL5104729.1"
                     /translation="MLYSVLTAHILLNEPYRNGAHSTQHEHLVVMFEIDEESGYFYAM
                     DLHQTEQPVVDSLFVFRVSDIEQNSLKEPRRLEICWSEDGYQAFLLINGYPHAVFDFR
                     QFVGYNHTKFPMPELGSMWVHKETTNELVEKWLG"
     gene            complement(6384..7694)
                     /gene="eno"
                     /locus_tag="PXA71_000591"
     CDS             complement(6384..7694)
                     /gene="eno"
                     /locus_tag="PXA71_000591"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDL5104730.1"
                     /translation="MAKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGLAAAPSGASTG
                     SREALELRDGDKGRFLGKGVLKAVSAVNNEIANALVGKDGSAQAEIDQIMIDLDGTEN
                     KSKFGANAILAVSLATAKAAAASKGLPLYAYIAELNGTPGVYSMPLPMMNIINGGEHA
                     DNNVDIQEFMIQPVGASTLKEALRIGAEVFHNLAKVLKAKGLNTAVGDEGGFAPNLAS
                     NADALACIKEAVEKAGYVLGKDVTLAMDCASSEFYDKERNVYDMKGEGKTFTSQEFTH
                     YLEGLCKEYPIVSIEDGQDESDWEGFAYQTKVLGDKVQLVGDDLFVTNTKILKNGIEK
                     GIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQ
                     IKTGSMSRSDRVAKYNQLIRIEEALERAGTPAPFNGRKEIKGQA"
     gene            complement(7885..9063)
                     /gene="rlmC"
                     /locus_tag="PXA71_000592"
     CDS             complement(7885..9063)
                     /gene="rlmC"
                     /locus_tag="PXA71_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HDL5104731.1"
                     /translation="MSSLLHCSHFERGDCTSCQWIEKPYSTQLAAKEADLKRLILPFI
                     LQNKTEILPLVGSPISQFRNKAKMVVSGSVERPILGILKDQNDAQSGVDLTDCLLYPS
                     SFHRLFPILKDFIARAGLVPYNISKKKGELKYILITESQYNQSFMLRFVVRSEAKRAL
                     VERELPELLEKLPPNSVVSLNIQPQHAALLEGETEIFLTEQKVLEEHFNGIPLFIRPQ
                     GFFQTNPVVASQLYHTAQSWIEHLPIAKLWDLFCGVGGFGLHCANALQAKNSNVELTG
                     IEISASAIASATKSAEKLGLKQVKFASLDSAQFALNEAGSPPDLVIVNPPRRGIGKLL
                     AEFLNQLGSPYLIYSSCNAVSMANDFTFLTNYELHKVQLFDMFAHTAHYETLTFLVKK
                     "
     gene            complement(9056..10093)
                     /gene="nagZ"
                     /locus_tag="PXA71_000593"
     CDS             complement(9056..10093)
                     /gene="nagZ"
                     /locus_tag="PXA71_000593"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HDL5104732.1"
                     /translation="MLLIDIKDKELTQEEVEMLEHPLVSGLILFTRNFYDKAQIQALV
                     KSIRQRVKKPLLITVDQEGGRVQRFREGFTKLPAMQSFNQLATTPEQAMQLAKETGWL
                     MAAEMFALDIDLSFAPVLDLGHECKAIGDRSFGQEPAAILPVAEAFIDGMREIGMATT
                     GKHFPGHGHVLADSHLETPFDDRPKERIFNHDILPFKQLIAKGKLSAIMPAHVVYTQC
                     DSQPASGSSYWLKEVLRKQLNFNGVIFSDDLGMKGAGFMGNFVERSEKAIQAGCDLLL
                     LCNEPEGLVQVLDGLKYQPTQAQKERRLSLMKRKTVTWRELENSSRYQQTQAELTALQ
                     NNWLEWKEANV"
     gene            complement(10219..10950)
                     /locus_tag="PXA71_000594"
     CDS             complement(10219..10950)
                     /locus_tag="PXA71_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDL5104733.1"
                     /translation="MFDWITNPEAWVALFTLTGLEIVLGIDNIIVISILVSRLPIEQR
                     QSARIIGLGLAMGTRILLLLSLAWMMRLVEPLFTIGNNPISGRDLILLIGGLFLIVKS
                     AMELKESISAESHEEKSESIKKASFFMVLIQIAIFDIIFSLDSVITAVAMADDIPVMV
                     IAIIIAVAVMMLAAKTIGDFVDNNPTIKNLALAFLILIGIVLVGEGFDIHIPKAAVYT
                     AMGFSVVVEMLNIKMRRNQAKLEQA"
     gene            complement(11039..11719)
                     /gene="mutH"
                     /locus_tag="PXA71_000595"
     CDS             complement(11039..11719)
                     /gene="mutH"
                     /locus_tag="PXA71_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HDL5104734.1"
                     /translation="MQLSTFSPTEQALLSKAEWLAGFTLGEIAEMLHIPIPADLKRDK
                     GWVGTLIETALGAKAGSKAEQDFAHLGIELKTIPVNQKGLPLETTFVSLAPLTQNNGI
                     IWETSHVKHKLSRVLWIPVEGERKIPLAERHIGQPILWSPTITQESRLQQDWEELMEL
                     IVLGELHKINATLGEVLQLRPKGRNNRSITSAINAKGEIVQSLPLGFYLRKHFTAEIL
                     QNFLHCPL"
     gene            complement(11811..12446)
                     /gene="lexA"
                     /locus_tag="PXA71_000596"
     CDS             complement(11811..12446)
                     /gene="lexA"
                     /locus_tag="PXA71_000596"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HDL5104735.1"
                     /translation="MRKHLTARQQEIFDFVKNHIETTGMPPTRVEIAREIGFKSPNAA
                     EEHLKALARKGYIEMLSGTSRGIRILVEDENQAANDEDEGLPLIGKVAAGTPILAVEH
                     VENHYPVNGAMFNPSADYLLKVNGNSMEKIGILDGDLLAVHKTNTARNGQVVVARVND
                     EVTVKRLEKKGELIYLHPENDELKPIVVNPAQEYIEIEGIAVGVIRSNAWM"
     gene            12613..15048
                     /gene="plsB"
                     /locus_tag="PXA71_000597"
     CDS             12613..15048
                     /gene="plsB"
                     /locus_tag="PXA71_000597"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HDL5104736.1"
                     /translation="MSGLLNFYRAFLNLPLSLLVKSRSIPTHPVAELELNLEQPIVYV
                     LPYTSQTDLLILQKNCLALNLPDPLQENVIEGQTLLRFVFLDEGRRFFKSKGAKSETE
                     SIFYRYLDLHRANAELDVQLVPVSVLWGRAPGKEDARHLQVLTSFQRFLSMVWFGRDN
                     FVRFSPAVSLRYMVTEYGADEKIAQKIARVAKMHFAKLRYSAMGPRLPNRDAMFNKIL
                     NSEVIQAAIAEEAKKSSPEKARKEAEKIINEIAADVKHESLRVADRVLSWLWNKLYQG
                     INVQNADRVRKLALEGHEIVYVPCHRSHMDYLLLSYLLYHQGLVPPHIAAGINLNFWP
                     AGPIFRSWGAFFIRRTFKGNRLYSTIFREYLAELFYRGYSVEYFIEGGRSRTGRLLEP
                     KTGMMSMSLQALQRGLNRSLSIVPVYIGYEHVLEVDTYAKELRGAAKEKENAGLVLRV
                     LKKLKNLGQGYVNFGEPILVNNYLNQYFPEWKEPSEDGRPKWLNEAVDNISHQVMVNI
                     NKAAAVNAKNLVGSALLASRQRALTREQLIEQLGSYIQLFRNVPYSKDMTLPTESAEV
                     MLNHVIHLPRSGVLIEKDNFGELVRLERESAVLMTYYRNNVQHLFVLPSLVASMVLHH
                     EAVSKDVVIKSVNRIYPFLQAELFLHFKQEELKAHIEAIIAELSRQGVIKNESDMLMI
                     NRSHIRTLQLHSAGVREILQRYYISLSVLLEQPNISRGYLEKESSSIAQRLSVLHGIN
                     APEFFDKAIFSTFTSSLKAQGYFDGDDNLAIAKVKETESLLRSLISIEVQQTIQGAMA
                     KVAESVENPNIAG"
     gene            complement(15153..15716)
                     /locus_tag="PXA71_000598"
     CDS             complement(15153..15716)
                     /locus_tag="PXA71_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HDL5104737.1"
                     /translation="MSAPNSGTNPAPLGLCGFALTTFLLSLINNGTFSGENVGLVLAM
                     GFAFGGTSQMIAGMFEFAKGNTFGFTAFTSYGAFWWSFALFKVFFAANVSAEFVGWYL
                     VAWGTFTLMMFIGTLAKARALQAIFLSLTITFYLLAAGDFTHNTTLTNIGGNFGLLTA
                     FLAFYLAAADIINESFGKTVLPIGEPK"
     gene            complement(15914..16810)
                     /locus_tag="PXA71_000599"
     CDS             complement(15914..16810)
                     /locus_tag="PXA71_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5104738.1"
                     /translation="MDILDRLLAFAQISAGISVKCQLQGDWQLENPHQTGQAIAHIIS
                     YGQAYLQHNGKTHHLKQGDIVFFPRFADHTLRSQIQPLTSKNAVNPEQLGAFTLTQAG
                     LSQSECDMFCLHFYYDHQAELMESLPEMIVFQVAETPLKAMLDILKQEAETPNLAVKS
                     VVNSLAVVILTMILREHLVNHNNQLFGILKGWQDLHLRPLIKAILLNPEHEWQVDDMA
                     AFIHLSRAQLVRLFNKHLCISPHAFVHKIRLQKAAMLLKSQAGSVLSIALSCGFQSES
                     HFITAFKKQYCVTPSQYRQLNP"
     gene            16946..17287
                     /locus_tag="PXA71_000600"
     CDS             16946..17287
                     /locus_tag="PXA71_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HDL5104739.1"
                     /translation="MSSFQNWTEHTAHVKQSFGKLGQKHPKMLEAYKALGTAAAAEAL
                     DHKTRELIALAVAITTRCESCISVHAEEAAKAGATESEIAGALATAIALNAGAAYTYA
                     LRALEAVEEQK"
     gene            17298..17651
                     /locus_tag="PXA71_000601"
     CDS             17298..17651
                     /locus_tag="PXA71_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDL5104740.1"
                     /translation="MKKLAWILGFAAMMPMMSSAKQASVQQVQAEKAAGIWIDVRSAE
                     EFQQGHLNGAINVTHTEIAQRIAEVAPDKNQPIHLYCRSGHRAEAALNELKKLGYSNV
                     TNHGGYDDLIKAGLK"
     gene            17711..18349
                     /locus_tag="PXA71_000602"
     CDS             17711..18349
                     /locus_tag="PXA71_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgB family protein"
                     /protein_id="HDL5104741.1"
                     /translation="MSAFNNFVNFVANIVAPMQRQFINFVRIAICIVMVWIGGLKVCQ
                     YEADGIAHFVSNSPFFSYMYKKGPNLVDDGTGKMVMEYTLHKNPEGKMVAKNIEWHKE
                     NGTYTASYIIGATIVTVGLLTLSGIWFPVSGMAGGLLTFGMSIVTLSFMITTPEIWVP
                     NLGGDMPTPAHGFPYLSAVGRLIVKDVIMMAGGLVAAAECANRILARRKAIA"
     gene            18484..19665
                     /gene="purT"
                     /locus_tag="PXA71_000603"
     CDS             18484..19665
                     /gene="purT"
                     /locus_tag="PXA71_000603"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HDL5104742.1"
                     /translation="MTTIGTPLRTNATKVMMLGSGELGKEVVIELQRLGVEVIAVDRY
                     DNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEVEAIATATLVELEQEGYNVI
                     PTAKATQLTMNREGIRRLAAEELGLKTSPYRFVDNFEQFQQAIQEIGIPCVVKPIMSS
                     SGHGQSVIKSEADIQQAWDYSQQGGRAGGGRVIVEGFIKFDYEITQLTVRHIHGTSFL
                     APIGHIQVDGDYRESWQPQQMSDIALKKAQETAEKITSALGGRGIFGVELFVCGDEII
                     FNEVSPRPHDTGIVTMASQELSQFALHARAILGLPIPEIYRISPAASKAIVVEGKSDN
                     VRFGGVDKVLAEIGTNIRLFGKGEVNGHRRLGVILARDENTVRALEKARRAYDKLDIQ
                     L"
     gene            complement(19757..21250)
                     /locus_tag="PXA71_000604"
     CDS             complement(19757..21250)
                     /locus_tag="PXA71_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005556599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL5104743.1"
                     /translation="MFKQLQQVGKAFMLPIAILPAAGLLLGIGGALSNKATVQAYPIL
                     DNPTLQGIFQIMASAGSVVFGNLALLLCIGLGIGLAKRDKGVAALAAVVGYLIMTGTI
                     SALIPLFPPETKGIDTGVIGSLVMGLITVKLHNKYHNIQLPQILGFFGGSRFVPIVTA
                     FAAIFVGAVFFLIWPAFQQWLVSAGQGIAEMGEIGTFFYGFLMRLSGAVGLHHMIYPL
                     FWYTELGGTEVVNGETIIGAQKIFFAQLADPTHQGLFTEGTRFFAGRFDTMMFGLPAA
                     CLAMYHAVPKARRGAISGLFLGAALTSFITGITEPIEFMFLFVAPWLYVFHAFLDGVS
                     FYIADLLNISIGNTFSGGVIDFTLFGILQGNENTNWLRVIIVGLPWAALYYFSFLFLI
                     KKFNVMTPGRAEESEEVVEQQTSSLTENAHKIIAALGSANNIENVDACITRLRVAVKE
                     VKAVDKATLKKLGAIDVLEVGGGVQAVFGAKAVLYKSEVNQILGKED"
     gene            21451..23298
                     /gene="ilvD"
                     /locus_tag="PXA71_000605"
     CDS             21451..23298
                     /gene="ilvD"
                     /locus_tag="PXA71_000605"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012055207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDL5104744.1"
                     /translation="MPILRSATSTQGRNMAGARALWRATGMKENDFGKPIIAVVNSFT
                     QFVPGHVHLKDMGQLVAAEIEKAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRDLIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPTIFVSGGPMEAGKTKLSDQLI
                     RLDLVDAMIESADPNVSDERIDAIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGN
                     GSMLATHADRKELFLRAGREIVELCRKYYQQDDESVLPRSIATFDAFENAMSLDIAMG
                     GSSNTVLHLLATAQEAGVDFKMEDIDRLSRVVPCLSKIAPNTNKYHMEDVHRAGGIMG
                     LLGELDRAGLIHRHVKTVLGLTIEEQLNQYDIIRNKDEDLHKFFRAGPAGIRTTKAFS
                     QDCRWDTVDDDRVNGCIRNVENAVTKEGGLAVLFGNIAEDGCIVKTAGVDESIWKFTG
                     TAIVFESQEDAVAGILGGKVKEGHIVIIRYEGPKGGPGMQEMLYPTSYLKSMGLGKKC
                     ALLTDGRFSGGTSGLSIGHASPEAASGGAIALINDGDTVAIDIPNRSINLMVSDEELA
                     ARRAEMEARGDKAWQPLKREREVSFALKVFGHFATSADKGAVRDKSLLK"
     gene            complement(23432..23782)
                     /locus_tag="PXA71_000606"
     CDS             complement(23432..23782)
                     /locus_tag="PXA71_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TusE/DsrC/DsvC family sulfur relay protein"
                     /protein_id="HDL5104745.1"
                     /translation="MWHFYLMTIELNNIQYPTDASGYLTNLNDWSVELAEKIAEKEQI
                     SLTAEHWEIIYLVRDFYQEYKTSPAIRMLVKTMAQKFGEEKGNSRYLQRLFPDGPAKQ
                     ATKIAGLPKPAKCL"
     gene            complement(23811..24476)
                     /locus_tag="PXA71_000607"
     CDS             complement(23811..24476)
                     /locus_tag="PXA71_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BAX inhibitor protein"
                     /protein_id="HDL5104746.1"
                     /translation="MENRLAHSYSTGESLISTHKVLRNTYMLLAMTLTFSAVVAFVAI
                     QMNAPAMPWWGLLVGFYGLLFLTNATSNSSAGILSVFALTGFLGYTLGPILNRYIGAG
                     LGDIVALAFGATALVFFACSAYVLTTKKDMSFISGMMVALFVVLLVGIIANIFLAIPA
                     LSLALSSLFVIFSSGAILLATSNIIHGGETNYIRATVDLYVSIYNLFVSFLQIFGVLG
                     SDD"
     gene            24682..25230
                     /gene="pgsA"
                     /locus_tag="PXA71_000608"
     CDS             24682..25230
                     /gene="pgsA"
                     /locus_tag="PXA71_000608"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDL5104747.1"
                     /translation="MKLNFPTYLTLFRVGLTPLFIVAFYLPTKYAPEISTLIFFIASI
                     TDAFDGYLARKWNQTTRLGAFLDPVADKVLVAVAFVCVAEYYHTWWITIPICIMIARE
                     IIISALREWMAELGERASVAVSIWGKVKTTAQMLALGGMLWRQNQLMEILAFILLYIA
                     VGLTIWSMMQYLNASKNSLLKS"
     gene            25308..27146
                     /gene="uvrC"
                     /locus_tag="PXA71_000609"
     CDS             25308..27146
                     /gene="uvrC"
                     /locus_tag="PXA71_000609"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDL5104748.1"
                     /translation="MSEFNAKSFLLNVPHQPGVYRMYDSKGTIIYVGKAKDLKKRLAS
                     YFRSQLSSKKTEALVANLANIETTITHSETEALLLEHNYIKENQPKYNVLLRDDKSYP
                     YILLTKHKHPRLTAFRGSKKIAGEYFGPYPNVTAVRETLNLLQKIFPIRQCEDTYYKN
                     RSRPCLQYQIGRCLAPCVEGCYSPVEYDQQVNLVRLFLQGKDHQVVEHLVQKMEDAAE
                     ALDFEGAARFRDQIQSVRAVQEKQFVSNDRLDDLDIISIVYQNGIACVHILFVRQGKV
                     LGNRSYFPKVPSNTDLTELADTFVGQFYLQMNQHRTIPNQIVIDHQLSESKALSEILS
                     EQAGHKVSILDNAIRGDKQRYLALARTNAMAALVLQLKQESHIQSRYQALKEMLKMSE
                     IKRMECFDISHTMGNQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALLKR
                     YNRELPPEKIPDIIFIDGGKGQLNRALDVFAKLDVEWDKSKPLLIGVAKGVERKAGLE
                     TLIISKWDKEIHLPPDSLALHLIQHIRDESHQHAISGHRKKRQKAFTESGLESIAGVG
                     AKRRQALLKYLGGMQGVKSATLEEIQSVPGISKALAEVIFDTLKNS"
     gene            complement(27151..27426)
                     /locus_tag="PXA71_000610"
     CDS             complement(27151..27426)
                     /locus_tag="PXA71_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104749.1"
                     /translation="MKKLILLGLSVALTACSTPQQQSTVPMDMQAVQDYHQRVINKQT
                     VDKNTKQHDEPLNQSDKRSESINLPIHPIIYPSIGVGYHYGWKRYRY"
     gene            complement(27551..27904)
                     /gene="rplT"
                     /locus_tag="PXA71_000611"
     CDS             complement(27551..27904)
                     /gene="rplT"
                     /locus_tag="PXA71_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009635878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDL5104750.1"
                     /translation="MARVKRGVIARARHKKVLKAAKGYYGARSRVYRVAFQAVVKAAQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGLSYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFAALVEKAKSAL"
     gene            complement(28013..28210)
                     /gene="rpmI"
                     /locus_tag="PXA71_000612"
     CDS             complement(28013..28210)
                     /gene="rpmI"
                     /locus_tag="PXA71_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDL5104751.1"
                     /translation="MPKIKTVRGAAKRFKKTASGGFKRKQSHLRHILTKKTTKRKRQL
                     RHKSMVAKADQVLVVACLPYA"
     gene            complement(28474..29016)
                     /gene="infC"
                     /locus_tag="PXA71_000613"
     CDS             complement(28474..29016)
                     /gene="infC"
                     /locus_tag="PXA71_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015871208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDL5104752.1"
                     /translation="MKPVKRVQSNRAHRLNDEIRGVKEVRLTDENGEQVGIVSLQDAL
                     NRAEEAELDLVEISPNAEPPVCRIMNYGKFIYEKEKAAKEQKKKQKVVQVKEIKFRPG
                     TDDGDYQVKLRSIIRFLEDGDKVKITVRFRGREMAHQEIGMDVLERVKADTAEIAMVE
                     SAPGKLEGRQVVMVIAPKKK"
     gene            complement(29175..30974)
                     /gene="recQ"
                     /locus_tag="PXA71_000614"
     CDS             complement(29175..30974)
                     /gene="recQ"
                     /locus_tag="PXA71_000614"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HDL5104753.1"
                     /translation="MNTTAISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGG
                     KSLCYQVPALCLDGITLVISPLISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQK
                     ALSGQLKLLYLSPEKVMTQGFFHFISLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGL
                     RNTFPNVPLMALTATADLTTRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPLEQ
                     LIKFISKQQGKSGIVYCNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQR
                     DDIQIVVATIAFGMGINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDP
                     SDYAWLQKILLEEPESEQRNIKQHKLQAIGDFAESQTCRRLVLLNYFGEHRQEQCKNC
                     DICLDPPQQYDGLLDAQKVMSVIYRTGQIFGQHHIIAVLRGMNNLKIREHQHDQLSVY
                     GIGKEQSQHYWQNVVRQLIHLGLIIQNIANHSALQLTESARPFLRGEKQLQLALPRLG
                     ISATAFVQKQASHRYDKDLFARLRFLRKQIADLENIPPYIVFNDATLQEMAEFLPTSK
                     VEMLEINGVGERKFERFGQAFMSLIKEYQNNRK"
     gene            complement(31083..31388)
                     /gene="cyaY"
                     /locus_tag="PXA71_000615"
     CDS             complement(31083..31388)
                     /gene="cyaY"
                     /locus_tag="PXA71_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HDL5104754.1"
                     /translation="MNTAQFHQAVEQVWQQIEEKIYDEGLSVDTEIQGAVCTLTFDDE
                     SQVIINKQEAMLELWLASKLGGFHFKNVEGEWVTDEGRSFWQHLEEAFARHGESVSF"
BASE COUNT         9027 a         6149 c         6946 g         9392 t
ORIGIN      
        1 ttacttgatg gaaaacggat ttgggtggaa aagaatttaa gctcaaatta atctgacaga
       61 cacggtaatt taaaacggga gactgtcaga tcaagtctga tcttctacaa ctaagccttc
      121 tcagaataaa taaattttca caagcggtgc aactttgcaa aaacttcggt attatgtagc
      181 agttgcacaa aaccccaaat tcattaaaac cgcttaaaaa tgaaatgccc taaactgatt
      241 tttcagtcta gggcatttat tatcacatat tatggttaat agggaaaact cacatcattg
      301 ttatgctggt gatatttttg ccaaaatgcg tgatattgtt ttttcaccga tgtgtttaat
      361 aaaaacggga ttatcaagac ataggtcggg caattccata gcattgcacg ttgtgtatcc
      421 gtgccgattt tggtgcgtaa gtaaccaaac tgatacatta gacccaatcc aaccgtcacc
      481 tattctaata gcataataac taaggtcgca tcattaaatt aaaagctcat tttttgcaaa
      541 aaatttccca aattccaccg cttgttggcg tacaataggc ataattttga tttacgatgg
      601 aggcagaatg tctgaaccga taaaacttac gcagttcagc cacggggcgg gttgaggctg
      661 taaaatttcg cctaaggtgt tagggacaat tttacaaact caattagaac aatttgtcga
      721 tccgaattta ttggtaggca atgaaacggc ggacgatgct gccgtctatg atttagggaa
      781 cgggcaggcc attatcagca ccaccgattt ctttatgccg attgtggacg ccccgtttga
      841 tttcgggcga attgctgctg ccaatgcgat tagcgatatt tatgcgatgg gtggcaagcc
      901 gattatggcg attgcgattc tgggctttcc ggtgaataaa ttgccggctg aagtggctca
      961 acaaattgtc gaaggtgggc gttttgcgtg ccagcaagcc ggtattgcct tggcgggcgg
     1021 gcattcgatt gattcgcccg atccgatttt cggcttggct gttaccggca ttgtgccgac
     1081 cgaacgggtg aaacgcaatg cctctgcggt ggctgggtgt gagctgtttt taaccaagcc
     1141 tttggggatt ggcattctaa ccacggcaga gaaaaaaggt ttgttgaagc ctgaacatca
     1201 acatctggca agcgaggtaa tgtgccaaat caacttgatt ggttcagcgt tttccgaact
     1261 gcctgaagtc acggcaatga ctgatgtaac cggttttggc ttactcgggc atttaagcga
     1321 ggtgtgtcaa ggctcgggct tacgggcgga ggttgatttt gaggatattc aagtccttga
     1381 tggcactaag gagtatattg cattgggagc agttccgggt gggacaaatc gcaatttcga
     1441 cagctatggg catttgattt cggcaatgac ggacgagcaa aaagcgattt tgtgcgatcc
     1501 gcaaacctct ggcggtttat tagtggcggt gctgccacaa gcggtcgaaa aagtgcaaca
     1561 aattgcaaat cgggcaaatg tgccgttatt ccacgttggc agattgctgg aaatggaaca
     1621 gggcaaacca cggattgagg taatttgatg tttaaaccaa atgtaacaat ggcttgcgtg
     1681 gtgcattgta agggaaagtt tctgtttgtg gaagaaattg aatatggcaa acgtaccctt
     1741 aaccagccgg cagggcattt agaaaaagat gaaaccttgc tggagggggc aagccgtgag
     1801 ctgtttgagg aaaccggtat tcgggcagaa atggcaaatt tggtgaaaat ttatcaatgg
     1861 caagcccctc gttcacaaac cgatttcttg cgttttctgt tttcggtgga actggaagag
     1921 tggctggagc cgaatccgca agatgcggat attacccaag ccctttggct tactttagca
     1981 gaatttgaag actacattca gcaacaaggg caatgtgcca gaagcccgtt ggtggttcaa
     2041 tcggtcaaag attatttaag cggtgagcgt tatccattaa gtttgttgaa tgcgtttgaa
     2101 tgggcgagaa atggaaaata aaacaacaac ccaatttgat gtggtgattg tgggcggggc
     2161 agtgaccggc tcggtgctgg cattggcgtt aagtagtttt actcatcaca aaatctcgat
     2221 tgcgatagtg gaaaaatcgc tgccggacta tgaacagcaa ggcggttttg atgctcgcag
     2281 tattgcctta gccgaaggca gtttgcaaaa aatggggcaa atcagaccgc ttgcaggctc
     2341 aagtttaggc gagatgatta gcgaaatcgg cacgccgatt cagcaaattc aagtagcgga
     2401 taaagggcat tttggtaaaa cgaccttgaa agcaagcgag cagaatgtgg ctcaactggg
     2461 tatggtggtg gaacttgcaa aattcggcag aaaattgacc gcttgtcttg cacagcaagc
     2521 taatattacg cttttttgcc cgaatcaagt ggttggcatt gagcgttccc aacaacattg
     2581 tggattgagc ttgaaaaatg gtgagaaact aagctgttcc ttgctggtgg cggcagatgg
     2641 tattcaatct cagattgcaa aacagtgcgg tgtggaaacc gtaaaagtaa gggattatgc
     2701 acaatcggca attatcgcca atgtggaact gagtgaatct caccaaaatc aagcctttga
     2761 atattttacg cctcaaggcc cttttgcttt attgcctttg agcggaaata tgatgtcgtt
     2821 ggtgtggtgt gtgaaagagc cgaacgagtt aatccaactt tcagacagtg aatttttagc
     2881 ccgtttgcaa caacaatttg gttggaagtt agggcaattt gttcgagtga gcaagcggtt
     2941 tgtttatccg ctcattttgc aaaaagccca gtcgcatatt caccaccgct tagcagttgt
     3001 cggcaatgcc gcacaaatgc ttcacccggt tgctgggcaa ggtttcaact taggcttgcg
     3061 tgatttgact accttagcgg aattagtggc tttggcgttt aatcaaggga aagatatagg
     3121 cgaattttcg ctcttatcaa cttttgagaa tgagagaacg caagatcaag ccagaatgat
     3181 aaatgctaca agcggtctga tttcgctttt ttgttgcgaa atgttaccag ttcaggttgt
     3241 gaggaattta gggttattaa cggtttccca ttcaaaaata gccagagatt ttgttgctaa
     3301 tcaggcatta ggttggtaaa aaacacaaaa gcagcaattt tctatttgac actgttttta
     3361 aaaaggcgta ttatccaacc cgtttaaaaa tctcaccaaa gccttgaatg caaattcaag
     3421 gctttttcct ttttagtgaa agcctatgaa ttttgtttgc cgtaaaatcg gcaaaaaaat
     3481 tttgcctaaa attcgcaatc gtttgcgaaa taggtttata gcgttgtttt catctgggta
     3541 actgcaatgg ttacatcgca atacatcaaa gagagtaaaa aatgaccaca gaaaatatga
     3601 gtacgccaaa gcaggcgttt atcgggctgc aaatgctgtt tgttgcattt ggggcgttag
     3661 tattagttcc gctgattacc ggtttagatc ctaatgttgc ccttcttacc gccggtgtcg
     3721 gtacgttaat cttccaaatt tgtactaaac gtcaagttcc tgttttcctc gcatcgagtt
     3781 tcgcttttat cgctccaatc caattcggtg ttcaacaatg gggaattccc gtcacaatgg
     3841 gagcattgct ctgttccggt tttatttata tggcattatc tgctttagtg aaagcgaaag
     3901 gggtgaatat tctgcataaa tacttccctc caatcgtgat tggaccggta attatggtga
     3961 ttggtttagg tcttgctcct gttgcggtgg atatggcaac gggtaaatcg gcgaatattg
     4021 cctataacac cgctattatt gtttcaatga taacgctggt aactacgctg attgtggcgg
     4081 tgtttgcgaa agggctatta aagctcgtgc caatattagc aggtttaacg gtgggatata
     4141 tcttgtctgt ttttatggga ttggtggatt ttactaaagt ggttgaagct ccttggttta
     4201 gtctaccgaa agtttccgca ccggaattca aattagatgc aatcttgtat ttattaccta
     4261 tcgcacttgc tccggcagtc gaacacttag gcgatgtaat ggcaatcagc caagttgccg
     4321 gtaaagattt tatgaaaaaa ccggggttac accgcacgct tttaggtgat ggtttagcaa
     4381 cttcagcagc tgcggcatta ggtggcccac caaatacgac ttactctgaa gtaaccggtg
     4441 cggtaatgct aaccaaaaac ttcaatccga aaattatgac ttgggctgcg tgctgggcta
     4501 tcgctttctc attctgcgga aaaatcgggg cattccttgc cactatccct acttttgtga
     4561 tgggcggtat tatgatgttg ctgttcggtg cagttgcggt tgtggggatc aatactctaa
     4621 ttaaagctaa agttgattta agcattccac gtaatctttg tattgcttct gtagtaatga
     4681 cattcggtat tggcggtatg ttaattaaca tcggcgaatt ctcattaaaa gggatcagct
     4741 tgtgtgcatt agtcgctatt gtacttaaca ttgtattacc aaaagaaaaa gtagaagatt
     4801 ctgctgctca ttaatcaaag gacgctgtgg cgtccttttt gctaataacc ctctatttgt
     4861 aaataaaaag gaataacact atgcaaaaac tcacattttc accaccactt ttaaatacgc
     4921 cttgcccttg gtgttcggag ttagagagct tgcgtgaact ttatgcgtgt gaatataccg
     4981 gtgcggtaac aacccgtact tcaatgcctc aaccatatcc acacgattgg gcgaagaacc
     5041 aatatgtact ctttgattcc aacgcacaga aaacagcaag tgtgaatact caagatgcaa
     5101 ctagcttaca aacagcaagc cttaacacca tcggtttaag cccaaataat ctggatacca
     5161 ccatcagctt tgtacgcacc atttcaaatg agctgacagc gccatcaagc aaaccattta
     5221 ttatttcggt gtttggttca cccgaagagg tgggggaatg ttatgaaaaa attgttgctt
     5281 tccaaactga agtgaaaatg cctttggcaa tggagattaa tatctcttgc ccgaatattc
     5341 cgggtgaaat ttcgcctgct tattccgcag aagaattatc acattacttg cacgcactac
     5401 aaacttcgct aaaaaaactg gctcaaggtg ataatacttt accaatcggg attaaaattc
     5461 caccttttac ttaccaaaat caatatgatg aattaatcaa aggcttatta caagcggtcg
     5521 aaaatggcga aaatttacca atttccttta ttacttcaac caatacgctt ggctcatcgc
     5581 ttgtcttaaa tgctggcaaa gcggtattaa attcagaagt gggaacgggc gtaggcggaa
     5641 tggcaggaac ggcaatccat gcactttctt tggggaatgt ttacacgatt cgccaaatgt
     5701 tagatcaaga gcctaagctc aaacatcttc aaattattgg tgtgggcggc gtgaatgata
     5761 aagccggctt tgagcgaatg aaatcggttg gggcagactt tgtggggtta gctaccgcat
     5821 taggggtgaa aggaatcggc gtttttaaag agattctgtc tgaataatga agaggagggc
     5881 gtgcattgca cgcccgaata aatgaaatta gcctaaccat ttctccacta attcattagt
     5941 ggtttcttta tgtacccaca tactgccaag ttccggcatt gggaatttgg tgtggttgta
     6001 gccgacaaat tggcggaaat caaacacggc gtgcgggtag ccgttgatca gtaaaaaggc
     6061 ttgatagccg tcttcactcc agcaaatttc taaacggcga ggttctttta atgaattttg
     6121 ctcaatatcg ctgacccgaa acacaaataa actatccact accggctgtt cggtttggtg
     6181 taagtccatt gcataaaagt agccgctttc ttcatcaatt tcaaacatca ctactaaatg
     6241 ttcgtgctgg gttgaatgag cgccattacg gtaaggttcg ttcagtagaa tatgagcagt
     6301 taaaacagag tagagcatta aattatcctt ataagtaaaa tgccaccgat ttctcagtgg
     6361 catttaaata tttaatcagg caattacgct tgacctttaa tctctttacg gccgttgaac
     6421 ggagccggtg taccagcacg ctctaacgct tcttcgatac ggattaactg gttgtatttc
     6481 gctacacggt ctgaacggct cattgaaccg gttttgattt gacctgctgc tgtacctact
     6541 gctaaatctg caatggttgc atcttcagtt tcgcctgaac ggtgagagat aactgcggtg
     6601 taacctgcat ctttcgccat tttgattgca gctaaagttt cagttaaaga accgatttgg
     6661 ttgaatttga ttaagattga gtttgcgata cctttctcaa taccgttttt caagattttg
     6721 gtattggtta cgaataagtc atcaccaact aattgtactt tgtcgcctaa tactttagtt
     6781 tggtatgcga aaccttccca gtcagattcg tcttgaccat cttcgataga cacgattggg
     6841 tactctttgc ataagccttc taagtagtga gtgaactctt gtgaagtaaa ggttttgcct
     6901 tcgcctttca tatcgtacac attgcgttct ttgtcgtaga attcagatga tgcacagtcc
     6961 atcgctaaag ttacgtcttt acctaacaca tagcctgctt tttctaccgc ttctttaatg
     7021 cacgctaatg cgtctgcgtt tgaagccaag tttggtgcga aaccaccttc gtcacctaca
     7081 gcagtattta agcctttcgc ttttaatact tttgcaagat tgtggaatac ttcagcaccg
     7141 atacgaagag cttcttttaa tgtagaagca cctaccggtt gaatcataaa ttcttgaatg
     7201 tccacgttgt tgtcagcgtg ttcaccacca ttgatgatgt tcatcattgg taatggcatt
     7261 gagtaaacac ccggtgtgcc gtttaattca gcaatgtatg cgtaaagcgg taagcctttt
     7321 gaagcggctg ctgcttttgc tgttgctaaa gaaaccgcta agatagcgtt tgcaccgaat
     7381 tttgatttgt tttctgtgcc atctaaatcg atcataattt ggtcgatttc agcttgtgca
     7441 gaaccgtctt tgcctactaa tgcgtttgca atttcgttat ttacggcaga aaccgctttt
     7501 aatacacctt tacctaagaa acgacctttg tcgccatcac gtaattctaa tgcttcacgt
     7561 gaaccggtag aagcacctga tggagcggct gctaagccta caaaaccacc ttctaagtga
     7621 acttctgctt ctacagttgg gttaccacga gagtcgatga tttcacgacc gattacttta
     7681 acaattttag ccattgttga tgtcctctaa tatacgagtt aatagaaaaa agaataggta
     7741 tatagtaaag cgattttctg cttttgtctt ggaaaaactg attgagtggc agaaaatttg
     7801 ccactaattt gatctaagac tatattcgcc tgagattata gcaacctttg caaaaaacgg
     7861 caaaaatttg cccgcttgta atgcttattt tttgactaaa aaagtcaagg tttcataatg
     7921 tgctgtgtga gcaaacatat caaacagctg cactttgtgt agttcgtaat ttgtcaaaaa
     7981 tgtaaaatcg ttcgccattg agacggcatt acaactggag taaatcaaat aaggtgagcc
     8041 taattgattt aaaaattctg ctaatagttt gccgatacca cgtcgaggtg ggttcacaat
     8101 cactaaatcg ggtggagaac cagcttcatt taaagcaaat tgtgcagaat ctaatgaggc
     8161 aaattttacc tgctttaggc cgagtttttc agccgatttg gtcgcacttg caatagctga
     8221 ggctgaaatc tcaatgcctg tcagctccac gttcgagttc ttcgcttgca aggcgttggc
     8281 acaatgtaag ccgaaaccac cgacaccgca gaacaagtcc cacaatttag caataggtaa
     8341 atgctcaatc cagctttgtg ctgtgtggta aagctggctt gctaccacag ggttagtttg
     8401 gaaaaagccc tgagggcgaa taaatagcgg tatgccgtta aaatgttctt ccagcacttt
     8461 ttgttcggtg aggaaaatct cagtttcgcc ttctaaaaga gcagcgtgtt ggggctgaat
     8521 attcagacta actactgagt tgggtggcag tttttccaac agttcgggca attcccgttc
     8581 aaccaatgca cgctttgctt cactacgaac cacaaaacgg agcataaatg attgattata
     8641 ttggctttcg gtaatcagaa tatattttag ctcacctttt ttcttactga tgttatacgg
     8701 cactaaacca gctcgagcga taaaatcttt caaaatcgga aaaagtctat gaaatgagga
     8761 cgggtagagc agacagtcgg ttaaatccac cccgctttga gcatcatttt gatcttttaa
     8821 aatgcctaaa atcgggcgtt ctacactgcc ggagaccacc attttcgctt tgttacgaaa
     8881 ttgcgaaatt ggcgagccga caagcggtaa gatttccgtt ttattttgca aaataaacgg
     8941 caaaatcaac cgcttgagat cggcctcttt ggcggctaat tgcgtgctgt atggcttttc
     9001 aatccactgg cacgaagtac agtcgccacg ctcaaaatgc gaacaatgca acaagctaga
     9061 cattcgcttc cttccattcc agccagttgt tttgtaaggc cgttaattca gcctgagttt
     9121 gttggtagcg agagctgttt tccagctctc gccaagtcac ggttttgcgt ttcattaaag
     9181 aaaggcgacg ttctttttgt gcttgagtcg gctgatattt cagcccgtct aacacttgca
     9241 ccaggccttc aggctcgtta caaaggagca ataaatcaca gccggcttgg attgcttttt
     9301 cagaacgctc gacaaaattg cccataaagc ccgcaccttt cattcccaaa tcgtcagaga
     9361 atatcacacc gttaaagttc agctgtttac gcaatacctc tttaagccaa tagcttgaac
     9421 cgcttgccgg ctggctatca cattgggtgt aaacgacgtg ggcaggcata atggcagaga
     9481 gttttccttt ggcaataagc tgtttgaacg gcagaatatc gtgattaaaa atccgctctt
     9541 tcgggcgatc atcaaacggg gtttctaaat gcgaatcggc taaaacgtgt ccatgaccgg
     9601 ggaagtgttt gccggtggtc gccataccga tttcacgcat tccgtcaata aaggcttcgg
     9661 caacaggcaa aatcgctgct ggctcttgcc cgaatgagcg atcgccaatc gctttgcatt
     9721 cgtgtcctaa atccagtacc ggagcgaaac tgaggtctat atcgagggca aacatttctg
     9781 ctgccatcaa ccagccggtt tctttcgcta attgcattgc ttgctctggc gttgtggcaa
     9841 gttggttaaa agattgcatt gccggcagtt tagtaaagcc ttcacgaaag cgttgcaccc
     9901 gaccgccttc ttggtcgaca gtaataagca acggtttttt cacccgctgg cgaatggatt
     9961 tcactaatgc ctgaatttgt gctttgtcgt agaaattacg ggtgaataaa attagcccgg
    10021 aaactaaagg gtgttccagc atttcgactt cttcttgagt cagttcttta tctttaatat
    10081 caatcagtaa cataattttc gttgagctat ttgcaaaaaa atgagcagat atgaccgctt
    10141 gttgtgccta ttctacatta aaaagccctt gatgttgatc aagggcgaat gattaagggc
    10201 ataaatgaga cagagcaatt atgcttgttc taatttagct tggttacgac gcatttttat
    10261 gttgagcatt tcaaccacaa ccgagaagcc cattgccgta taaaccgctg cttttggaat
    10321 atgaatatca aaaccttcgc cgactagtac aataccgatt aaaatcaaga acgctaaagc
    10381 gagattttta atggttgggt tgttatctac aaagtcccca atggttttcg ctgctaacat
    10441 cattaccgca actgcaatga taatcgcaat aaccattacc ggaatatcat ctgccattgc
    10501 cacagcagta atgactgaat caagggagaa aataatatca aaaattgcaa tttgaattaa
    10561 caccataaaa aagctggctt ttttaatgga ttcgcttttt tcttcgtgag attcggcaga
    10621 aatggattct ttcagctcca ttgcactttt aacaatcagg aataatccac cgatgagtag
    10681 aatgagatct ctacctgaaa ttggattgtt gccaatagtg aaaagaggct cgaccaaacg
    10741 catcatccaa gcaagcgaga gaagcaataa aatacgggtt cccattgcca gccccaagcc
    10801 gataattcgg gcagattggc gttgttcaat aggtaaacgg gaaacgagaa tactgatgac
    10861 gatgatgtta tcaatgccta atacgatttc aagcccggta agtgtaaaga gcgcaaccca
    10921 agcttcagga tttgtgatcc agtcaaacat aaaaatgtcc ttttaaaaat aagggattaa
    10981 gtgatatttt ctatcaaata gaattaaagc cgacatctta tagagtgtga ggacaaattt
    11041 aaagggggca atgcaaaaag ttttgtaaaa tttcggcggt aaaatgttta cgcaaataga
    11101 aaccaagagg gagagattga acaatctccc ctttagcgtt gatagcagag gtgatagagc
    11161 ggttatttct acctttgggt ctgagttgta acacttcgcc taaggttgca ttaattttat
    11221 gcagttcacc taacacaatc aactccatta attcctccca atcttgctgt aggcgggatt
    11281 cttgtgtgat agtcggagac cataaaatcg gctgaccgat atggcgttcg gcaaggggta
    11341 tctttcgttc cccttcaacc ggaatccaaa gcacacggga aagcttatgt ttaacgtggg
    11401 aggtttccca aataataccg ttgttttggg ttaaaggagc aaggctgacg aatgtggttt
    11461 ccagcggtaa tcctttctga ttgaccggaa tggttttcag ctcaatgcct aaatgtgcaa
    11521 aatcctgttc ggctttactg ccggctttcg cacctaaagc ggtttcaatc agagtaccga
    11581 cccagccttt atctcgtttc agatctgctg gtatcggaat atgaagcatc tcggcaattt
    11641 cacctaaagt gaaccctgcc agccattccg ctttgcttaa taatgcctgc tcggttggag
    11701 agaatgtaga taattgcatt gcacttagtt aattagacta aactggcaag cggtcaaatt
    11761 taggcagaaa tttgcaaaaa attactaaaa aataaccgct tgtgaggaaa ttacatccaa
    11821 gcattactgc gaataacgcc tactgcaatg ccttcaattt caatatattc ttgagcaggg
    11881 tttactacaa tcggttttaa ttcatcgttt tcagggtgta agtaaattaa ttcacctttc
    11941 ttctctaagc gtttaacagt cacttcatca tttacccgag caaccaccac ttgcccgtta
    12001 cgagcggtat tggttttatg aacggctaat aggtcaccgt ctaaaatacc gattttttcc
    12061 attgaattgc catttacttt gagtaaataa tcagcacttg gattaaacat cgcaccattc
    12121 accgggtaat ggttttcaac gtgttcaacc gctaaaatag gtgtgccagc agctactttg
    12181 ccaatcaacg gtaagccttc atcttcatcg ttggcagctt ggttttcgtc ttcgactaaa
    12241 atgcgaattc cacgagatgt acctgataac atttcaatat agcctttacg agcaagggct
    12301 tttaagtgtt cttctgccgc attaggtgat ttaaagccga tttcacgggc tatttctact
    12361 cgggttggtg gcataccggt ggtttcaata tggtttttga cgaaatcaaa aatttcttgc
    12421 tgacgggcag ttagatgttt acgcatttta agttaatcct cactgtcttt atatacagaa
    12481 aatattgata gtatatacag tatttttgat tttgtaacta ataatttcac gaaattccat
    12541 aaaaatttat ggtagaatgg aagaaattag aggttagacc tccaacaata acgattctaa
    12601 aaggatattt atatgtctgg cttattaaat ttttatcgag ctttcctaaa cttaccactt
    12661 tcacttttag taaaatctcg ctctattccg actcatccgg tggctgaact ggaactaaat
    12721 cttgaacagc cgattgtcta tgttctacct tatacctcgc aaaccgattt attaatttta
    12781 caaaaaaact gcttggcttt gaatttgccc gatccgttgc aagaaaatgt gattgaaggg
    12841 caaacattgc ttcgttttgt atttttagat gaaggtcgcc gtttttttaa atctaaaggg
    12901 gcgaaaagtg agacagagtc gattttttat cgttatttag atttacatcg tgctaatgct
    12961 gaattagacg tccaattagt gccggtttcg gtattatggg ggcgggctcc gggcaaagaa
    13021 gatgcccgcc atttacaggt gcttacctca ttccaacgtt ttttatccat ggtttggttt
    13081 gggcgtgata attttgtacg tttctcccct gcagtatcgt tacgctatat ggtaactgaa
    13141 tatggtgcag atgaaaaaat cgctcaaaaa atcgcgcgtg tggcgaaaat gcactttgca
    13201 aaattgcgtt attcagcaat ggggcctcgt ttaccaaatc gtgatgcgat gtttaataaa
    13261 atcctgaatt cagaggtgat tcaagctgcg attgcggaag aagcgaagaa atcatcgcct
    13321 gaaaaggctc gcaaagaagc cgagaaaatc attaatgaaa ttgccgctga tgtaaaacac
    13381 gagagtttgc gtgtagcaga tcgagttctg agctggcttt ggaataagct ttatcaaggg
    13441 atcaacgtgc aaaatgcaga ccgtgtgcgt aaattggcat tagaaggtca cgagatcgtt
    13501 tatgtgcctt gccaccgtag ccatatggac tatttgctcc tatcttatct actttaccat
    13561 caaggattag taccgccaca tattgccgct gggatcaatt taaatttctg gccggcaggc
    13621 ccgattttcc gtagttgggg agcatttttc attcgccgta cctttaaagg aaatcgcctc
    13681 tattccacca ttttccgtga atatttagcg gaattattct atcgtggtta ttcggtcgaa
    13741 tattttattg aaggcgggcg ttcacgcaca ggtcgtttat tagagcctaa aaccggtatg
    13801 atgtcgatga gcctacaagc cttacagcga gggctgaata gatctttaag tattgtgcct
    13861 gtttatatcg gttatgaaca cgtcttagaa gtcgatactt acgctaaaga gttgagaggt
    13921 gcggcaaaag agaaagaaaa tgcgggcttg gtgctacgag tgctgaaaaa actgaaaaat
    13981 ttaggtcaag gatatgtgaa tttcggtgag ccaattttgg tgaataatta cttaaatcaa
    14041 tatttccctg agtggaaaga gccttccgaa gatggacgac ctaagtggtt aaatgaagcc
    14101 gtggataata tttcacatca agtaatggtg aatatcaata aagcggcagc agttaatgcg
    14161 aaaaacttag tggggtcagc attattggca tctcgccagc gtgcattaac ccgtgaacaa
    14221 ctcattgaac aacttggaag ttatattcag ttatttcgta atgtacctta ttctaaagat
    14281 atgacattac caactgaaag tgcagaagtg atgttgaatc atgttattca tttacctcgt
    14341 tcgggcgttt taattgaaaa agataatttt ggtgaactgg ttcgtttaga acgagaatct
    14401 gctgtgttaa tgacatatta cagaaataat gtgcagcatt tatttgtgtt gccttcactt
    14461 gttgcaagta tggtacttca tcatgaggct gtttcgaaag atgttgtgat taagtcggtt
    14521 aatcgtattt atccattctt gcaagcagag ttattcttac actttaagca agaagaatta
    14581 aaagcacata ttgaagcaat tattgcggaa ctaagtcggc agggggtgat taaaaacgaa
    14641 agtgatatgt taatgatcaa tcgctcacat attcgtacct tgcaattaca ttcagctggt
    14701 gtgcgtgaaa tccttcaacg ttattatatt agcctaagtg tcttgttgga gcagccaaat
    14761 attagtcgtg gctatttaga aaaagagagt agttcaattg ctcagcgttt atcagtcttg
    14821 catggtatta atgcgccgga gttttttgat aaggcgattt tctctacctt tacatcaagt
    14881 ctaaaagcac aagggtattt tgatggtgat gataatttag cgattgcaaa agttaaagaa
    14941 acggaatcgt tgttacgtag tttgatttcg attgaagttc aacagaccat tcaaggtgcg
    15001 atggctaaag tcgcagaatc tgtagagaat cctaatatcg caggataata aatcaaagaa
    15061 gggcgctaac aagcgctcgt ttcttgcaat tttgttgcca aaaataaaag ctgaatgcgc
    15121 gaccacattc agctttttta cttcctatat aattattttg gttcaccgat tggtaaaaca
    15181 gtcttaccaa aactttcatt aataatatcc gcagcggcta agtagaacgc taagaatgcg
    15241 gttaataaac cgaagttacc accaatgtta gttagggtgg tgttatgggt aaaatcacct
    15301 gcggctaaaa ggtagaaagt aatggttaaa cttaagaaaa tagcttgtaa tgcacgggct
    15361 tttgctagtg tgccgatgaa catcataagt gtgaatgttc cccaagctac taagtaccaa
    15421 ccaacgaatt ctgccgatac attcgcagca aagaacactt taaataatgc aaaagaccac
    15481 cagaatgcac catagctggt aaacgcagta aagccgaacg tgttaccttt agcaaattca
    15541 aacatacctg caatcatttg tgatgtgcca ccgaaagcaa atcccattgc taaaactaaa
    15601 cctacgtttt caccgctgaa tgtaccgtta ttgattaggc ttagtaaaaa tgtagtaagt
    15661 gcaaaaccgc ataaaccgag cggagccggg ttagttcctg aatttggagc tgacattgaa
    15721 aacctctgtt atattgttac accataagtg tggtaattgt ttatttacgc cgataaatca
    15781 gacgttatgt gcctaaaatt tagggcgata aagtatagcg attttgcagt aaattgacta
    15841 gaaatttccg agacaagcgg tgagattttt gcaaaatttt gccaaaaaat gaccgcttgt
    15901 tgttgtcatt tagctatgga tttaactgcc gatattggct gggtgttacg caatattgct
    15961 ttttaaaggc ggtaataaaa tgcgactcgg attggaagcc gcaagataag gcgatactta
    16021 ataccgaccc agcttggctt ttgagcagca ttgctgcttt ttgtagccta attttgtgta
    16081 caaaagcatg tgggctaata cataaatgtt tgttaaataa gcggactaac tgggcacgag
    16141 aaaggtggat aaatgccgcc atatcatcga cttgccattc gtgttcggga ttaagcaaaa
    16201 tagctttgat caaaggtctt aagtgtaagt cttgccaacc ttttaaaata ccgaataact
    16261 gattgttatg gttaactaga tgttctcgta agatcatagt taaaataaca acagcaagcg
    16321 agttaaccac agattttacg gctaaattag gtgtttctgc ttcttgtttt agaatatcta
    16381 acattgcttt taatggtgtc tcggcaactt gaaatacgat catttcaggt aagctttcca
    16441 ttaattcggc ttgatggtca taataaaaat ggaggcagaa catatcgcat tctgattgag
    16501 aaagtcctgc ttgggtgagt gtaaatgcac ccaattgttc agggtttacc gcatttttgc
    16561 tggtcaaagg ctgtatttga ctacgtaatg tatgatcggc aaatctgggg aaaaatacaa
    16621 tatctccctg tttaaggtga tgggttttcc cattatgttg tagataagct tgcccatagc
    16681 tgatgatatg agcgattgct tgtccggttt gatgcggatt ctcaagttgc caatctccct
    16741 gtaactgaca tttcacactg attccggctg agatttgagc gaaagctaga agcctatcta
    16801 atatatccat tgttcattcc ttatatttcc accttaaatt gcgattattt cattataata
    16861 tgagctgatt tgataataaa gtttatcaga taaacgcaat aataaatgcg ttttttcata
    16921 ttattcactt taggaggaaa tcaatatgtc ttcattccaa aattggacag aacacacagc
    16981 tcacgttaag caatcttttg gtaaattagg gcaaaaacac cctaaaatgc ttgaagctta
    17041 taaagcatta ggtacagcgg ccgcagcgga agcattagat cacaaaactc gtgaattaat
    17101 tgcattagca gtagcgatta caacacgttg tgaaagttgc atcagtgtac acgcagaaga
    17161 agcggcaaaa gcaggtgcaa ccgaaagcga aattgccggt gcattagcga ctgcgattgc
    17221 attaaatgcc ggtgcggcat atacctatgc tttacgtgca ttagaagcgg tggaagagca
    17281 aaaataagga gcaataaatg aagaaattgg cttggatttt aggctttgca gctatgatgc
    17341 caatgatgtc tagtgctaaa caagcatcag ttcagcaagt gcaggctgaa aaagcagcgg
    17401 gcatttggat tgatgtacgt tctgctgaag aatttcagca agggcattta aatggtgcaa
    17461 ttaatgtaac gcatactgaa attgcacaac gtatcgcaga agttgctcca gataaaaatc
    17521 agccgattca tctttattgc cgctcgggtc atcgagctga agcggcgctt aatgagctaa
    17581 aaaaattagg ttacagcaat gtaactaatc atggtggtta tgacgatctg attaaagccg
    17641 ggttgaaata actgttttga gtgccaagca tttgcttggc acttttcgtt tatatctgag
    17701 gttaaaaatt atgagtgctt ttaacaattt tgttaatttt gttgcaaata ttgttgctcc
    17761 aatgcaacgc caattcatta actttgtacg tattgccatt tgtatcgtga tggtttggat
    17821 tggtggttta aaagtctgcc aatatgaagc agacggtatt gcccattttg tgtctaatag
    17881 cccgttcttt agttatatgt acaaaaaagg cccgaattta gttgatgacg gcacaggtaa
    17941 aatggtgatg gaatataccc ttcacaaaaa ccctgaaggt aaaatggtgg caaaaaacat
    18001 cgaatggcat aaagaaaacg gcacttatac tgcatcttat atcatcggtg caaccattgt
    18061 gacggttggt ttattgacgt tatccggtat ttggttcccg gtttccggta tggcgggggg
    18121 cttactcacc tttggtatgt cgattgttac actctctttt atgatcacca cccctgaaat
    18181 ttgggtgccg aatttaggtg gggatatgcc aaccccagcg catggtttcc catatctgtc
    18241 agcagtcggt cgtttaattg tgaaagatgt gattatgatg gcaggcggct tggttgccgc
    18301 agcggaatgt gcaaatcgca ttttagccag acgtaaagcg attgcttaat tgatagtggt
    18361 aatgcaagcg gtcattttct tgtaaaattt tgcaataaaa tgaccgcttg ttttttgtca
    18421 atttgccata atttcaagta taattcaatt acgtaatcgt ttgcttttat ggagaggaat
    18481 aaaatgacaa caatcggtac accgttaaga acgaacgcta caaaagtgat gatgttaggt
    18541 tcgggcgagt tggggaaaga agtggtaata gagctgcaac gcttaggcgt agaagtgatt
    18601 gcggtggatc gttatgacaa tgcacctgca cagcaagtgg ctcaccgtgc ttatacgatt
    18661 tcgatgttag acgggaatgc attgcgagat ttggtggaga aagaaaaacc ggattttatt
    18721 gtgcccgaag tagaagccat cgcaactgca accttggttg agttagagca agagggatat
    18781 aacgtaatcc caacggcaaa agcaacgcaa ttaacaatga atcgagaagg cattcgccga
    18841 ttggcggcag aagagttggg cttaaaaacg tcgccttatc gttttgtgga taattttgaa
    18901 cagttccagc aagcgattca agaaatcggc attccgtgtg tggtcaaacc gattatgtct
    18961 tcttccggac acgggcaatc agtaattaaa tctgaagcgg atattcaaca ggcttgggat
    19021 tattcgcaac agggcggacg tgccggcggt gggcgtgtga ttgtagaggg ttttatcaaa
    19081 ttcgattatg aaattaccca gcttaccgtt cgccatattc acggcacgtc gtttttagct
    19141 cccatcgggc atattcaggt tgatggcgat tatcgtgaat cttggcaacc gcagcaaatg
    19201 tcggacattg cattgaaaaa agctcaagaa accgcagaaa aaattacctc tgcactgggc
    19261 ggaagaggga ttttcggcgt ggaacttttt gtctgtggcg atgagattat ttttaacgaa
    19321 gtctccccac gtccacacga taccggaata gtaacaatgg catcacaaga gctttctcaa
    19381 tttgctctgc acgcccgtgc gattttgggc ttaccgattc cggaaattta ccgcatcagc
    19441 ccggcagctt ctaaagcgat tgtggttgaa gggaaatcgg ataatgtgcg ttttggcggt
    19501 gtagataagg tattagccga aatcgggacg aatatccgct tattcggtaa aggcgaagta
    19561 aacggacacc gccgattagg ggtaattctt gctcgtgatg aaaatacagt gagagcatta
    19621 gaaaaagctc ggcgagctta tgataagtta gatattcaat tataaagtca ggattttgat
    19681 attcgttgat agtaggcatt ttatgcctac tatcctatag gcctctaatc aaattggatg
    19741 aaaaagttga agattgttaa tcctctttgc cgagaatttg gttcacttcg ctcttataca
    19801 atactgcttt tgctccaaat acggcttgta caccgccacc gacttccagc acgtcaatcg
    19861 caccgagttt tttcagtgtt gctttatcca cggctttcac ctctttcact gccacacgca
    19921 gacgggtaat acaagcatcc acattttcga tattatttgc agagccaaga gcggcgataa
    19981 ttttatgggc attttcagtc agtgagctgg tttgttgttc gactacctct tcactctctt
    20041 ccgcacgtcc cggtgtcatt acgttgaatt ttttgatcag gaataggaac gagaagtagt
    20101 aaagtgccgc ccacggcaag ccgactatga tcactcgaag ccagttagtg ttctcgttgc
    20161 cttgcaaaat gccaaacagg gtgaagtcga tcacgccacc ggagaaggtg ttaccaatcg
    20221 agatgttgag taagtctgca atgtagaacg acacgccgtc taaaaaagcg tggaacacat
    20281 agagccacgg ggcaacaaac aggaacataa attcaatcgg ctcggtaatg ccggtgataa
    20341 aagaggtgag cgctgcacct aagaacagac cgctaatcgc accacggcgg gctttcggca
    20401 cagcgtgata catcgctaaa caggcggcag gtaagccaaa catcatcgta tcgaaacgtc
    20461 cagcgaagaa acgtgtacct tcggtaaata agccttgatg ggttggatcg gcgagttggg
    20521 cgaagaagat tttttgcgcc ccgataatgg tttcaccatt taccacttct gttccgccca
    20581 attcggtgta ccaaaacagc gggtagatca tatggtgtaa gccgaccgca ccgcttaacc
    20641 gcattaagaa accgtagaaa aaggtgccga tttcgcccat ttccgcaatc ccttgccctg
    20701 ctgaaaccaa ccactgttgg aaagccggcc agatcaaaaa gaacactgcc ccgacaaaaa
    20761 tcgcagcaaa ggcggtcaca atcggcacaa accgagagcc gccaaagaag ccgagaattt
    20821 gcggcagctg aatgttgtgg tatttgttat gcagtttcac cgtaatcaag cccattacca
    20881 gcgagccgat cacaccggta tcaatccctt tggtttcagg aggaaacagc ggaatgaggg
    20941 cagaaatcgt gcctgtcata atcaaataac cgaccactgc tgccagtgcc gctacgcctt
    21001 tatctcgttt tgctaatcca atgcctaaac cgatacacag taataatgca aggttgccaa
    21061 acaccacact gcctgccgat gccataatct ggaaaatgcc ctgtaaagtc gggttatcca
    21121 gtatcgggta ggcttgcacc gttgccttat tcgacaaagc tccgccaatc cctaacagca
    21181 aaccggctgc cggtaaaatc gcaatcggca gcataaaagc ttttccgact tgttgcagtt
    21241 gtttgaacat aaaatttctc cttttttatg gttgtatttg atggtttata gcatactgaa
    21301 atttagccgt atgaggtgtg atataactca cagatttgca aaatttttag caaattcgac
    21361 cgcttgtaaa aaaattaccg cttgcggaaa aattgaagta gaattaagca tttttttagc
    21421 aaacacaaca taaaaaattt ggagaagatt atgcctattt tacgttcagc aacttccact
    21481 cagggtcgta atatggcggg ggctcgtgca ttatggcgtg caaccggtat gaaagaaaat
    21541 gattttggta agccgattat tgcagtggtg aactcattca cccaatttgt gccggggcac
    21601 gtccacttaa aagatatggg gcagttggtt gcggcagaaa ttgaaaaagc cggtggggtg
    21661 gcaaaagaat tcaacaccat tgcggttgat gacggcattg caatgggaca cggcggaatg
    21721 ctttattctt taccaagccg tgatttaatt gcagacagtg tggaatatat ggtgaatgct
    21781 cactgtgctg atgcgatggt gtgtatctct aactgcgata aaatcacccc gggaatgtta
    21841 atggcagcaa tgcggttaaa tattccgact atttttgtct ctggtggccc gatggaagcc
    21901 ggaaaaacta aactttccga tcaattaatt cgcttggatt tagtcgatgc aatgatcgaa
    21961 agtgccgacc cgaatgtgtc tgatgaacgt attgatgcga ttgaacgtag tgcttgcccg
    22021 acttgtggtt cttgttcagg tatgttcacc gcaaactcaa tgaactgttt aactgaagct
    22081 ttaggcttaa gtttaccggg caatggttca atgttggcaa ctcatgctga ccgtaaagag
    22141 cttttcctaa gagcaggtcg tgaaattgtg gaactttgcc gtaaatatta ccaacaagac
    22201 gatgagagcg tgttacctcg ctcaatcgct accttcgatg catttgaaaa tgcaatgagc
    22261 cttgatattg caatgggtgg ttcaagtaat accgtgcttc atttactagc gactgctcaa
    22321 gaagccggcg ttgattttaa aatggaagat attgaccgcc tctctcgtgt cgtgccgtgc
    22381 ttaagtaaaa ttgccccgaa taccaataaa taccatatgg aagacgtaca ccgtgccggt
    22441 gggattatgg gcttgctggg cgaattagat cgtgcaggtt taatccatcg ccacgttaaa
    22501 acagtgctag gtttaacgat agaagagcaa ctgaatcaat acgatattat tcgtaataaa
    22561 gatgaagatt tacacaaatt cttccgtgca ggtccggcag gaattcgtac tactaaggct
    22621 ttctcgcaag attgccgttg ggacactgtt gatgatgacc gtgtaaacgg ctgtattcgc
    22681 aatgtggaaa atgctgtgac caaagagggc gggttagcgg tattatttgg gaatattgca
    22741 gaagatggat gtattgttaa aaccgcaggg gtagatgagt ctatttggaa attcactggc
    22801 accgcaatcg tgtttgaaag ccaagaagat gcggtagcag gtattttagg cggaaaagtg
    22861 aaagaagggc atattgtgat tatccgctat gaaggtccga aaggcggccc gggtatgcaa
    22921 gaaatgcttt atccaactag ttatttgaaa tcaatgggct taggcaaaaa atgtgcttta
    22981 ttaactgacg gtcgtttctc tggcggtacc tcagggttat ctatcggaca cgcttcaccg
    23041 gaagccgctt caggaggagc gattgcctta attaatgatg gcgatacggt ggcgattgat
    23101 attccgaatc gttcgattaa cttaatggtt tcagatgaag aacttgctgc tcgccgtgca
    23161 gaaatggaag cccgtggcga taaagcgtgg cagccgctaa aacgtgagcg agaagtgtcg
    23221 tttgcactaa aagtgtttgg acattttgcc acctctgctg ataaaggtgc ggtgagggat
    23281 aaatcgctgt taaagtaaat aaattagaaa aaagaagcat ttcaataata tattgatctg
    23341 ctctttattc agctgaatat ttaatctagc tgaatggaga gcagatcgat agcctaattt
    23401 acatcttttt gttttgatac agggaaatgt attacaagca ttttgccggt tttggcagac
    23461 ctgcaatttt agtggcttgt tttgcaggac catcaggaaa caagcgttgt aaataacggc
    23521 tgttgccttt ttcttcaccg aatttttgtg ccattgtctt taccagcatt cgaattgctg
    23581 gtgaagtttt gtattcttgg tagaaatccc gcaccagata aataatttcc caatgttctg
    23641 cggttaagct aatttgctct ttttcggcga ttttttctgc taattctaca gaccaatcat
    23701 ttaaattagt taaatagcct gaagcatcgg ttgggtattg gatattattt aattcaatcg
    23761 tcatcaaata aaaatgccac ataatgtggc attcctctta aactaaaacg ctagtcgtca
    23821 ctacctagca caccgaagat ttgtaagaag cttacaaata ggttgtagat agacacatat
    23881 aaatcaacgg ttgcacgaat gtagttggtt tcgccaccgt gaataatgtt gctggttgcc
    23941 agtaaaatcg caccgcttga gaaaatgaca aacaagctgc ttagggctaa acttaatgcc
    24001 ggaattgcta agaagatatt ggcaataata ccgactaata ataccacaaa cagggcaacc
    24061 atcattccgc tgataaagct catatctttt ttggtggtta atacataagc tgaacaagcg
    24121 aagaaaacca atgcggttgc accgaatgca agggcgacaa tatcccctaa acccgcaccg
    24181 atgtaacggt ttaaaatagg acctaaggta tagcctaaga agccggttaa agcaaatacg
    24241 cttaagatac ccgcactgct gtttgaggtg gcattcgtca agaaaagtaa gccgtaaaag
    24301 ccgaccaata atccccacca cggcatagcc ggtgcgttca tttgaattgc aacaaaagca
    24361 acaactgcgg agaaagtcag ggtcattgcc aataacatat aggtattgcg aagcactttg
    24421 tgggtgctaa ttagagattc accagttgaa tagctgtgag ctaaacgatt ttccataaaa
    24481 attccttctg tttttgtgtt taaatcggaa catccgatgg attaatatct atggataaat
    24541 ttccataaat caagaagtaa ggtagccgta atttattgta aagtcaatgc gattttgtaa
    24601 cagaagagta aaaaaaaaca tttagttgtg ttacacttaa taccactcta ctttatattc
    24661 cttttcatcg atgaattcgc tatgaagctc aatttcccaa cttatttaac cttatttcgg
    24721 gtaggattaa ccccactttt tattgtggct ttttatctgc cgacaaaata tgcgcctgaa
    24781 atttcaacac ttattttttt tattgcatcg attaccgatg cctttgacgg ctatttagca
    24841 cgcaaatgga atcaaaccac ccgacttggt gcatttttag atcctgttgc ggataaagtc
    24901 ttggtagctg ttgcgtttgt ctgcgtggcg gagtattacc atacttggtg gattactatt
    24961 ccaatctgca ttatgattgc ccgtgaaatt attatttcgg ctttgcgtga atggatggcg
    25021 gagcttgggg aaagggccag tgttgccgtt tcgatttggg ggaaagtaaa aacgactgct
    25081 caaatgctcg cattaggtgg aatgttatgg agacagaacc aactaatgga gattttagcc
    25141 tttattctgc tttatattgc agtgggttta acgatctggt ctatgatgca gtatttaaat
    25201 gcttcaaaga atagtctatt gaagtcataa gcggtcatat ttttattctt ttttgcaatt
    25261 tgtagagtgg aaatatcgct ctacaatttt caattttatc aactctaatg tctgaattta
    25321 acgctaaatc cttcctgtta aatgtgcctc accaaccggg tgtttatcgt atgtatgata
    25381 gtaaaggcac gataatctat gtgggtaaag ccaaagattt aaaaaagcgt ttagccagct
    25441 attttcgtag ccaactttcc agtaaaaaaa cggaagcctt ggtggcaaat cttgctaata
    25501 ttgaaacgac gatcactcat tctgaaacag aggcgttact ccttgaacat aattatatta
    25561 aggaaaatca gccgaaatat aatgtgttgc tcagagatga caaatcttat ccttatattc
    25621 tgttaactaa acataagcat cctcgtttaa cagcatttcg tggtagtaaa aagatcgccg
    25681 gtgaatattt tgggccttat ccgaatgtta cggcagttcg ggaaacactg aatttattgc
    25741 aaaaaatttt tcctattcgt cagtgtgaag atacttatta taaaaaccgt tcacgacctt
    25801 gcttacagta tcagatcgga cgctgtttag ccccttgtgt agagggctgt tattcacccg
    25861 ttgaatacga tcagcaggtt aatttggttc gtttgttttt acagggaaaa gatcaccaag
    25921 tagtcgagca tctggtacag aaaatggaag atgcggcgga ggctttggat tttgaaggtg
    25981 cggcacgttt tcgggatcaa attcaatcag taagagcggt gcaagaaaaa caattcgtct
    26041 ctaatgatag gctagatgat cttgatatta tctcgatcgt ttatcaaaat gggattgcct
    26101 gtgtgcatat cttatttgtt aggcaaggta aggtactagg caatcgttct tactttccaa
    26161 aagtgccaag taatacagat ttaaccgagc tcgcagatac ctttgtcggt cagttttatt
    26221 tacaaatgaa ccagcaccgc accataccta accaaattgt aattgatcat caattaagtg
    26281 aatctaaggc actcagtgaa attttaagtg agcaagcagg gcataaagtc agcattttag
    26341 ataatgccat cagaggtgat aaacagcgtt atttagcttt agcgagaact aatgcaatgg
    26401 cagcattagt tttacaactt aagcaagaat cccatattca aagccgttat caggcattga
    26461 aagaaatgtt gaaaatgtca gagattaaaa gaatggagtg ctttgacatc agtcatacaa
    26521 tgggcaacca aacagtggct tcttgcgtgg tgtttgatga aaatgggccg ctaaaatcgg
    26581 attaccgccg ttttaacatt gaggggatta ccggaggtga tgattatgca gcaatggagc
    26641 aggctctctt gaaacgctat aatcgagaat taccgccaga aaagatccct gatattattt
    26701 ttattgatgg tggcaaaggg cagttgaacc gagcgttaga tgtcttcgct aaacttgatg
    26761 tggaatggga taaatcgaaa ccgcttttaa ttggtgtggc aaaaggcgta gaacgtaaag
    26821 ctgggctgga aactttaatt atcagcaaat gggataaaga aattcactta ccgccagata
    26881 gtcttgcctt gcatttaatt cagcatattc gagatgaatc ccaccagcat gccattagtg
    26941 ggcatcgtaa aaaacgccaa aaggccttta ccgaaagtgg attagaatct attgccggtg
    27001 tcggtgcaaa acgccgacaa gcgttgctaa aatatttagg cggaatgcag ggggtgaagt
    27061 ctgcaacctt ggaagagatt caatcagttc cgggaatttc taaagcgttg gcagaggtta
    27121 tttttgatac attaaaaaat agttaaatta tcaatagcga tatcgcttcc agccgtaatg
    27181 gtagcccact cctatgcttg ggtaaattat agggtgaatt ggcagattta tgctttctga
    27241 gcgtttatcg ctttggttta atggctcatc atgttgcttt gtatttttat caacagtttg
    27301 cttattgatt actcgttgat ggtaatcctg aactgcttgc atatccattg gtactgtgct
    27361 ttgttgttgg ggtgtcgaac aggcggttag tgcaacgctc aatccgagta aaattaattt
    27421 tttcatatca tttccttata ttgcaaaata ttttgctttt ttgaccgctt attttgctat
    27481 taattcttaa aaagattatt ttatccataa aaaaggacgc actaggcgtc ctcatttcta
    27541 ttctttaaaa ttaaagagca gattttgctt tttcaactaa agctgcgaaa gcaactttgt
    27601 caaatactgc gatgtcagct aagatcttac ggtcgatttc aacagatgct tttttcaagc
    27661 cgttgatgaa tttgctgtaa gataaaccgt tttgacgagc tgctgcgtta atacgagcaa
    27721 tccataattg acggaattga cgtttacgtt gacggcggtc acggtaagca tattgagcag
    27781 ctttaactac tgcttggaaa gcaacgcgat acacgcgtga acgtgcacca taataacctt
    27841 tagcagcctt aagaactttc ttatggcgtg ctcttgcaat aacaccacgt tttacacgag
    27901 ccattattta atctcctaat tgtctatttt gattggtggt cgtcatcacg acctttacta
    27961 agaattctat ccgtacgtcc gtactttact acactacgct aacctaaaag gcttatgcgt
    28021 atggtaagca cgctactact aaaacttggt cagctttcgc taccattgat ttgtgacgta
    28081 attgacgttt acgtttagtg gttttcttag tcaaaatgtg acgtaagtga gattgtttac
    28141 gtttaaaacc gccggaagct gtttttttga aacgcttagc agcaccacgt actgttttaa
    28201 ttttaggcat tgttaaaaaa ctccgcattg tttgttagat attatgaaaa taaggcgaat
    28261 tttgtgaaca aaattacttg gaagcactta ttctccgcta tacgattttc atcgttaaaa
    28321 agtcaagcag gctgctgagt ttgcctgttg agcattttct ctttcttggc taggcaaaaa
    28381 agcttgcgaa ttttagcgaa aatataaccg ctatgcaagc caatttaagc tttatcaaga
    28441 aaaaagcaca ttaaaacaat gtgcttatcg aaattatttc ttcttaggtg cgatcaccat
    28501 cacaacttgg cgaccttcca atttgcctgg ggctgactct accattgcaa tttctgcagt
    28561 atctgctttg acacgttcta aaacgtccat accgatttct tggtgagcca tttcacgacc
    28621 acggaaacgc actgtgattt ttactttatc cccatcttct aagaaacgga taatgctacg
    28681 aagtttaact tgataatcgc catcatcagt tcccggacgg aatttgatct ctttaacttg
    28741 aacaactttt tgttttttct tttgttcttt tgctgctttc tctttttcgt agatgaactt
    28801 accatagttc ataatacgac aaactggtgg ttcagcattt gggctgattt ccactaaatc
    28861 caattcagct tcttctgctc tatttagagc atcttgaagt gatacaatac caacttgttc
    28921 gccgttttca tcggttaagc gaacttcttt tacgccacga atttcgtcat taagacgatg
    28981 tgcacgattt gattgaacac gttttacagg tttaatagcc ttattccttc tagtaaattt
    29041 ttgcttaaat tttaccgctt gagagcgtat aaatatttta gattgcttgt tttaagtgat
    29101 taaaaaacag ctaaacgtgc ggattctata agattttcag tgcttatgca ataataaagc
    29161 ccttatttaa ctgcctattt tcggttattt tgatattctt tgattaaact cataaatgct
    29221 tgcccaaatc gttcaaattt tcgttcacca acaccattaa tttctaacat ttccactttt
    29281 gaagtcggga gaaattctgc catttcttgc aaggtggcat cgttaaagac gatataaggt
    29341 ggaatatttt cgaggtcagc tatctgcttg cgtaaaaaac gtaagcgtgc gaataggtct
    29401 ttgtcatagc gatgacttgc ttgtttttgc acaaatgcag tcgcagatat acctaaacgt
    29461 ggcaatgcaa gctgaagttg cttttctcca cgcaaaaatg gtctggcact ttcggttaat
    29521 tgcagagcgg aatggttagc aatattttga ataatcaacc ctaaatgaat cagttgccgc
    29581 accacatttt gccaataatg ttggctttgt tcttttccga taccataaac ggaaagttga
    29641 tcgtgttgat gttcacgaat tttgagattg ttcattcctc gcaataccgc aataatatgg
    29701 tgctgaccga aaatttgacc ggtgcggtaa atcaccgaca tcactttttg ggcatcaagt
    29761 aagccatcgt attgttgcgg tggatctaaa caaatatcgc agtttttgca ttgctcttgg
    29821 cgatgttccc caaagtagtt gagtaagact aaacggcggc aagtctgtga ttcggcgaaa
    29881 tcgccaattg cctgtaattt atgctgttta atatttctct gttcgctttc cggctcttcc
    29941 aataatattt tttgtaacca agcataatcg ctaggatcat aaaaaagcac ggcttcagaa
    30001 gggagatcat ctcgcccggc tcgtccggtt tcttgatagt aagattcgat agagcgaggt
    30061 aaatcgaaat gtaccacaaa acgtacgttg gatttgttga tccccatacc aaacgcaata
    30121 gtggcaacca caatttgaat atcatcacgc tgaaaggcat tctgcactcg ttctctctgt
    30181 tcaaaactca taccggcgtg atagcccatc acgctgattt tacgggctga gagtttctcg
    30241 gtgatttctt ccactttttt gcgactgttg cagtaaacaa taccgctttt gccttgctgt
    30301 ttgctgatga atttaatgag ctgttcaagc ggtttaaatt tttcctgcac ggtgtagcga
    30361 atattggggc gatcaaagct gcctaaatag atatgtgggc tatttaagcg taaatgatgc
    30421 agaatatcgg agcgggttgt tagatctgcc gtggcggtga gtgccatcaa cggcacattc
    30481 gggaaagtgt ttcgtaagcc acctagcagg gtatattcag ggcggaaatc gtgcccccat
    30541 tgggaaacac aatgggcttc atcaaccgca ataaagctga ttttacatag cgaaataaag
    30601 tggaaaaagc cttgagtcat taccttttca ggggaaagat agagtaattt taattgaccg
    30661 gataaggctt tttgttccac aagttgctgc tcttcgagcg tttgagtgga gttaagataa
    30721 gctgcttcaa tgccgttggt gataagttga tccacctggt ctttcatcaa cgaaataagc
    30781 ggcgaaatca ccaaagtgat gccgtctagg cacaaagccg gcacttggta gcaaagggat
    30841 ttgccaccgc ctgttgtcat aatcacgagg caatcacgat tttccaacac ggcattgata
    30901 acttcttctt gcccgtctcg gaatttttga tagccaaaaa tattatttaa aacagaaatt
    30961 gcggtggtgt tcattggtag ttggttgcta cttatgatag tactcgtctt ctgagagtat
    31021 cttttaaaat gaaaataaag cactcatcaa agacgagtgc tgtcttagtt aacaattagg
    31081 cattagaaag aaacgctttc tccgtgtcga gcaaaagctt cttctaaatg ttgccagaac
    31141 gagcgacctt catctgttac ccattcgcct tctacatttt taaagtggaa accacccaat
    31201 ttgctggcaa gccataattc cagcattgcc tcttgtttat taatgataac ttgcgattca
    31261 tcatcaaagg ttaaggtgca gaccgctcct tggatttcag tatcgactga taatccttcg
    31321 tcataaattt tttcttcaat ttgttgccat acttgctcta cggcttggtg gaattgtgct
    31381 gtgttcattg gtgtatcctt atttgaatgt tatataagta gtaaatactt tttgttttag
    31441 ctgtttaaat ggtctgtaaa gttctttttg tatttttgtt aagaaataat taggcttttt
    31501 aagtttagct tgat
//
LOCUS       DANLRW010000017        31114 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.017, whole genome shotgun sequence.
ACCESSION   DANLRW010000017 DANLRW010000000
VERSION     DANLRW010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 31114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31114
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.017"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(27..671)
                     /locus_tag="PXA71_000616"
     CDS             complement(27..671)
                     /locus_tag="PXA71_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104755.1"
                     /translation="MRIWQKLASVIVVTLGLISNASAENFKLKYSSNYLMPAYINFNN
                     GGGQYNIQAKINVPLYNIVFSAKGTEKNEQFHMLSYRDTRNGKTYAMAEIDSKTVKYG
                     KVKEPLKEEALTMPTYDLFTTAFQLSYYDKLPSSFQTTNGKKLYPTPNVQLRKAQKEV
                     KVGGKTYQEITYKFRTSDKKDITVKKFEGEKFPRYIAYSRDGDNYELTFDSFVK"
     gene            complement(672..1655)
                     /gene="cysB"
                     /locus_tag="PXA71_000617"
     CDS             complement(672..1655)
                     /gene="cysB"
                     /locus_tag="PXA71_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HDL5104756.1"
                     /translation="MKLQQLRYIVEIVNQNLNITEAAEVLYTSQPGISKQVRLLESEL
                     GINIFERNGKHVKGLTPAGEKIVAIARELLVKAQSIKSVAEEQTRPNKGILRIATTNT
                     QARYMLPSVIEKFKARYPEVSLHLHQGSPNQIYDALVAGEVDLAITTEAQYLFDEAVL
                     LPCYWWNRSVIVKPEHPLAAFVNQSKNLTVEQLGRYDLITYTFGFTGQSDLDHAFNKE
                     GILPNIVFTATDADVIKTYVRLGLGVGIMASMAHTETDKDLVAINASHLFQPSMTQIA
                     FKRGTFLRNYMYDFINYFSPHLTRVQVEKAEQLRDNNAISRLFESISLEEK"
     gene            complement(1652..2335)
                     /gene="yjjG"
                     /locus_tag="PXA71_000618"
     CDS             complement(1652..2335)
                     /gene="yjjG"
                     /locus_tag="PXA71_000618"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HDL5104757.1"
                     /translation="MKYQWVLFDADETLFSFNSYLGLKAMLARYQIDFSEQDYQDFQA
                     VNKPLWVAYQNNEITAQDIQTRRFVKLSAQTGVDPLQLNQELMAEMAFVSQPLEGVMD
                     MLNALYGKVKMGIITNGFTDLQQKRLDNTQTSHFFDIVVISEQIGAAKPDRQVFDYAF
                     ALMDEFDRTKVLMVGDTLASDILGGNNAGIDTCWLNLLSKENDTDIKPTYEVHTMQQI
                     IAIVEGKSL"
     gene            complement(2411..3304)
                     /locus_tag="PXA71_000619"
     CDS             complement(2411..3304)
                     /locus_tag="PXA71_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HDL5104758.1"
                     /translation="MNKKLPPLNALKAFESAARHLNFTKAAEDLFVTQAAVSHQIKLL
                     EDFLGASLFHRRNRLLELTELGAQYFYEVQPLLEQIALATDKIRQQSSRQILTISVPQ
                     TFGMHWLVPRLADFHEKYPEVEVRIKGVDQDEGLLGKETDVAIYYGKGDWQGLESIRL
                     TESRIVILASPEYLSQNTIHLPADLAGKHLLHSSTHNKWKRMVEHLHIEDIVDAETGS
                     IFSHTFMVLQAAMHQQGIAIANQLLAQHEIEKGTLIEPFPTTLFDEKSFYVVYPSQSA
                     QVQKVQFFVEWIQQKMKECCA"
     gene            3750..4787
                     /gene="rsgA"
                     /locus_tag="PXA71_000620"
     CDS             3750..4787
                     /gene="rsgA"
                     /locus_tag="PXA71_000620"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HDL5104759.1"
                     /translation="MSKPKLTHNQQRRIQSNHHKRINKKEIEWQDEMLGEMQQGIVVT
                     RHVKHADVETAEGQIFRCNIRRTLKNVVVGDQVSWRKGSEQLQGISGVIEAVFPRKNE
                     LTRPDYYDGIKVMASNIDQIIIVSAVLPTLSLNIIDRYLVICETANIPALIVLNKIDL
                     LNESERQAVKEQLKIYEEIGYETLCLSADTGENMQALHQYLAKGTSIFVGQSGVGKSS
                     LINQLLPEVNALTGSVSDNSGLGQHTTTASRLYHLPQGGQLIDSPGIREFGLWHLEPE
                     QITLGYREFQSVLGTCKFRDCKHKTDPGCALRQEVENGEISAIRFENYHRLIESLSET
                     KSQRHFRKEEV"
     gene            4784..5383
                     /gene="rnhB"
                     /locus_tag="PXA71_000621"
     CDS             4784..5383
                     /gene="rnhB"
                     /locus_tag="PXA71_000621"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDL5104760.1"
                     /translation="MMNEFIYPNARLIAGVDEVGRGPLVGAVVTAAVILDPNNPIQGL
                     TDSKKLSEKKRQALAEEIKAKALSWSLGRAEPTEIDELNILNATMLAMQRAVAGLHIQ
                     PDFVLIDGNRPPKLPMPAQAVVKGDSLVAEISAASIIAKVARDQEMDELDQQFPQYGF
                     AQHKGYPTKLHFEKLAEFGATPYHRKSFAPVRKVLGLID"
     gene            5396..5755
                     /locus_tag="PXA71_000622"
     CDS             5396..5755
                     /locus_tag="PXA71_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HDL5104761.1"
                     /translation="MTTEYQKTIFTKIINKEIPANIVYQDELVTAFRDIAPQAPTHIL
                     IIPNKFIPTVNHVSNEDELALGRLFTVAAKLAQEEGIAEEGYRLVMNCNKNGGQEVFH
                     IHMHLLGGQKLGPLVAK"
     gene            5758..6129
                     /locus_tag="PXA71_000623"
     CDS             5758..6129
                     /locus_tag="PXA71_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HDL5104762.1"
                     /translation="MRISYFAFAIFSIFLTACGSKPVSYLPTGSEPIVNIESDIAEKI
                     ELETNSKQFSTTNLTEFPLNLTYKLFWYNKDGVTQSHNGISDSIGWQHLWLQPKQKQT
                     IALIKPTEESHNYRLYLRGVK"
     gene            complement(6164..6793)
                     /locus_tag="PXA71_000624"
     CDS             complement(6164..6793)
                     /locus_tag="PXA71_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5104763.1"
                     /translation="MFNLQIIPVSPFQQNCTVIWDENKNAAIIDGGDNAEGIIQFVES
                     QQLKVQKLLITHGHLDHIMAVEKLREHFQVEVFGSHLADKPLFERLPEMCQQFGLPPV
                     NGFLPDHWLEEGDRVEVGELSYTVRHLPGHAPGHIGFFDFDNRIAFSGDVLFQNSIGR
                     TDLYLGNHSQLLETIREKMFDLDDDFIIIPGHGPHTTIGREKQTNPFLK"
     gene            complement(6810..7364)
                     /locus_tag="PXA71_000625"
     CDS             complement(6810..7364)
                     /locus_tag="PXA71_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HDL5104764.1"
                     /translation="MKQINVQRRKWLSLGGLVLGASLLPGQVMAALSTPAPAALRFRN
                     VNTGDTYTAKFGAGGLNKTDLSQLNYLMRDRHINQVKAIDPKLFVKLNQLQRRLGFHN
                     AEILVLSGYRSAQTNARLRRRSRGVASHSYHILGQAVDFQVSGVPLYKVKQAAESLNN
                     GGVGYYPRSNFVHVDTGPVRTWRG"
     gene            complement(7534..9039)
                     /locus_tag="PXA71_000626"
     CDS             complement(7534..9039)
                     /locus_tag="PXA71_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase family protein"
                     /protein_id="HDL5104765.1"
                     /translation="MVAFSGMALAETATVAQVASEPVVQDNILPQLSFAAQQARAAEL
                     VKQADYALEQEQIRQEQARKFAEAEARIKQEIGNNALLLSQATTKVYLDSEFATMWND
                     KAAEKAFLKEYALFAVSGVSSKSAKALQQILNQPEGLGRDILLTDGFLDYLYYNKNVF
                     KNANNWLYNLGSYVPKSPSSEQIFQWTNAVREGDSGQFVTDLVPRNHLYRDTAQRVLA
                     MAGGSSAPKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNGIFVNIPSYQLY
                     YFRDGNLALQSKVIVGREDRRTPVMYSKLSNVVVNPPWNVPTSIMTKDIIPKLARDPG
                     YADRASFEILDSSGNKINPRSVNWSQYLNAKSSPYRIRQKAGDDSALGRYKFNMPSSD
                     AIYLHDTPNRGLFGKTGRALSSGCVRVEKSDELATILLKEAGWGSDKKNQVLGSKKTT
                     SAQIRSDNPVYLYYVTAWVEGGKVQTLPDIYNFDAKIPQHSVNWGKLKSII"
     gene            complement(9157..11169)
                     /gene="prc"
                     /locus_tag="PXA71_000627"
     CDS             complement(9157..11169)
                     /gene="prc"
                     /locus_tag="PXA71_000627"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HDL5104766.1"
                     /translation="MKLTRLNKIFALALGLMIGNAFAVQPDIKESAIVMPKPNEQHSL
                     STKRVTARLTQSHYHKFQLNDEFAGKIFNRYVDWLDPSHNTFLQADIDEMRSKYATTL
                     DDDLYAGKLDAAFAMYELMSKRRYERYSYALSLLDKEPDLKGNDEIEIDREKAAFPKS
                     VEEANTLWEQRVKNDIINLYLKDKKWPEIKKTLTKRYNFAIKRLTQVKADDILQTYLN
                     SFSREIDPHTSYLSPRAAKAFQESMNLSLEGIGATLTQEDDVTSIRALVPGAPAAKSK
                     KLVVGDKIVGVGQGERGEIEDVIGWRLDNVVDKIKGKKGTKVRLEIEPEKGGKTKIIT
                     LVRDKVRIEDSAAKLTVEKVDGKNVGVIKIPTFYIGLTSDVRKLLTQIEKKNVEGLII
                     DLRENGGGSLTEVIELTGLFIKDGPVVQVQDAFNRIKVHEDPESKSVYDGKVMVMINR
                     HSASASEIFAAAMQDYNRAIIVGQQTFGKGTVQQSRSLNFVYDLDQEPLGFIQYTIQK
                     FYRINGGSTQLKGVEADIKFPEIINAAKTGESFEDNALPWDKIPAANYKEAGNARNAV
                     AALTAKHQERIAKNPEFIVLNENIAIRKERDERKFLSLNLEERLKENKADESKRLKDI
                     NARFAREGKKALKDIDDLPKDYEAPDFFLKEAEQMMLDWSEFDKKS"
     gene            complement(11255..11791)
                     /gene="proQ"
                     /locus_tag="PXA71_000628"
     CDS             complement(11255..11791)
                     /gene="proQ"
                     /locus_tag="PXA71_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HDL5104767.1"
                     /translation="MSEQIEQKVEQTQNKTNPSTKEVIAYLAEKFPLCFTLEGEVKPL
                     KVGLFQELAEALKDDEKISKTLLRQVLRNYTNSWRYLAASQANVARVGLQGEEVGVVT
                     EDEATHAAEALAAAKAVVAERKAQERKAQRKEYFKQKAREENAKKRAEFKAKKAIDNL
                     PKASEEKLAALADKFGRK"
     gene            12119..12331
                     /locus_tag="PXA71_000629"
     CDS             12119..12331
                     /locus_tag="PXA71_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HDL5104768.1"
                     /translation="MSAITGTVKWFNATKGFGFITPDQGGKDVFVHFSAIEANGGYRT
                     LEDGAKVQFEIQDSERGASAVNVKTI"
     gene            complement(12391..13545)
                     /locus_tag="PXA71_000630"
     CDS             complement(12391..13545)
                     /locus_tag="PXA71_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HDL5104769.1"
                     /translation="MMKVSPFQWAAFNYFGFFCAYGVLLPFLPVWLKHHGYSTEMIGL
                     FAAVGYLFRFAGSMLASQRVKTVSQLIPTARSLTWLNIAAAAALLFSGDFIWLLFPVL
                     MLFQMFNSGAMPIADSIASIWQHQIGLDYGRARLFGSMAFVVGSLSAGYLIGLLGENS
                     VVWIIIGFLVFLGIGQLATPKVGFEEQGNKANTSSVTYRQLLKEPETLKMLIAVSLIS
                     ASHATYYTYSTIHWSNASISTAMTSLFWGLAVVAEILFFLVSKRLFKSWKISHLMILA
                     AVFAVIRWAIMGSTTEIVLIIVMQMLHSITFGAAHIAMIRYISMQSAERVTKLQGLYF
                     GLASCAFMAVFTFIAGMVYQHSPSLTFWLMAIFTLPAIFIVPKRFEVQIN"
     gene            complement(13542..14360)
                     /locus_tag="PXA71_000631"
     CDS             complement(13542..14360)
                     /locus_tag="PXA71_000631"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDL5104770.1"
                     /translation="MNEKKLAFIGTGNMAYAIIQGLLKSGYSAEQIIACNKSNLARRE
                     ELQAVGIATNFANREAVEQADVIVLAVKPQMMAQVCAEFADVDFSNKWVISVAAGISV
                     QRLETLLPSAKNIIRTMPNTPSLISEGMTGLFAKKSVNPTACQFAEQLMSAVGKCYWV
                     ETEEQINHIIAITGSSPAYFFRFMEAMQQSAVQMGFSEQDARTLVQSVALGAAKLVEA
                     NPTTPLSTLRENVTSKGGTTAKALEVFEQHDLAKTVDDAMWAAIHRAREMEQSL"
     gene            14437..15345
                     /gene="rdgC"
                     /locus_tag="PXA71_000632"
     CDS             14437..15345
                     /gene="rdgC"
                     /locus_tag="PXA71_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HDL5104771.1"
                     /translation="MVWFKNVMIYKLTGELALESNSLNELQQETRFTPCSQHDMSKFG
                     WATPLTGSDLLHFSQANQFLLISHKEDKLLPANVVKAETEQRIAELEEKEARKLKKTE
                     KQAVKDQVVSALLPRAFSKHQFTALWLDLDNQLVYVDAASSKRAEDTLALLRKTLGSL
                     PVVPISFTLPPAEVMTNWIAKGHTPSWLNLLEEAELKSFDTDSIIRCKRQDLETEEIA
                     RHLQAGKFITKLAIEWEGHFNCVLNEDATLSRLKFADEVREKNDDILKEDVAQRFDAD
                     FLLMTEELKLFTEKMIAEFGGIKSRI"
     gene            15366..15971
                     /locus_tag="PXA71_000633"
     CDS             15366..15971
                     /locus_tag="PXA71_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase family hydrolase"
                     /protein_id="HDL5104772.1"
                     /translation="MLDQTIIDQYDALIFDMDGTLIDTMPSHAKAWEKVGEVLGYPIN
                     PKPMYELSGSTTFVIAREIMQRSNIPEHYFEQVVQLKREFGIEMVLANATLLPAFEII
                     KANVGKKPMAIGTGSHRAMVELLDQKFNLRQYVSVIVDSDDVSNHKPAPETFLKCAEK
                     LGIAPHRCLVFEDADLGVQAALNGNMNVFDVRTNTITHSTR"
     gene            15987..16778
                     /locus_tag="PXA71_000634"
     CDS             15987..16778
                     /locus_tag="PXA71_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HDL5104773.1"
                     /translation="MKTEWIKHLIQQLTTLSKAIENYFTSGSFGVKFYPFLMHPCFRK
                     SCAFLIFIIAMVSSFSGLFYLVAEHITILFSERSLTTYFHHSTLELMIPVGTMIDEKI
                     SELSPLSVVMRSMFVLQAVVFFFIYAIGITHIAHNKLRVIGLLLSLCFAIGCSLVAGI
                     QPSSRGEFGIYNLGASITFLIGNLTLIIAGFDLYHPSMQFFKRFSIGAGVIGAICILI
                     TIFLPTLFSPLIERAGIYTIMLWEILAGFAIIKRLLKLPSFRQQG"
     gene            16782..17924
                     /gene="argE"
                     /locus_tag="PXA71_000635"
     CDS             16782..17924
                     /gene="argE"
                     /locus_tag="PXA71_000635"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HDL5104774.1"
                     /translation="MKQIPFIQRYAQLIELPTISSLVAEEDLSNRRLIELLATWLADF
                     GFKTEILAVEGSRNKYNLLATYGEGEGGLLLAGHTDTVPFDEGKWRFNPFQLTEKAGK
                     LYGLGTADMKGFFAFVVEVVSQLDLTQIKKPIRILATADEETTMLGARTFAQHSHIRP
                     DCAIIGEPTSLKPIRAHKGHIGESVRITGRSGHSSDPAKGINAIELMHQSIGYLMKMR
                     DELREKYHNPLFQVTHPTMNFGNIHGGDAINRICACCELQFDMRPLPNMAVQDLYAMV
                     NEHLKPMLEQYGDLIEIRHLHDGIPGYECEHSAQIVQVVEKLLGEKCDAVNYCTEAPF
                     IQQLCPTLVLGPGSIEQAHQPDEFLEMKYIEPTKELLTKLIYHFCG"
     gene            complement(18071..18358)
                     /locus_tag="PXA71_000636"
     CDS             complement(18071..18358)
                     /locus_tag="PXA71_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5104775.1"
                     /translation="MPKSWELSLTARSNVIEILQSVEDYTGHWLSAVSLWEQLQNKLD
                     LIAFMPTIGRRREDGTLETFCRNYRIVYEIHLEKVYIITIIHSRRLYPRPS"
     gene            complement(18351..18542)
                     /locus_tag="PXA71_000637"
     CDS             complement(18351..18542)
                     /locus_tag="PXA71_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104776.1"
                     /translation="MLFKEQGYDEFLAEQIKAGQEAIARGETFTKEQINNELNHLFAD
                     MQKRQQLRENENLFEVNYA"
     gene            complement(18832..19422)
                     /gene="yraP"
                     /locus_tag="PXA71_000638"
     CDS             complement(18832..19422)
                     /gene="yraP"
                     /locus_tag="PXA71_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HDL5104777.1"
                     /translation="MNKLANKLLKGSLLVLGFISLQGCITTAVVTSAAVATKVATDPR
                     TTGTQVDDEILEEKVAYNINKDEQIKQEARINVVAYNGKVLLIGQAPSMDVVENAKNL
                     AAGAEGVTEIYNEIRQGEKIGFGQITQDSWITTQVKSKLLVNSEVKATEVKVVTENGE
                     VFLMGKVSQNQADAAAEAARNVGGVTKVVKVFSYAQ"
     gene            complement(19432..20016)
                     /locus_tag="PXA71_000639"
     CDS             complement(19432..20016)
                     /locus_tag="PXA71_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HDL5104778.1"
                     /translation="MLNKIQDRFTESIQTQISASELLPAKLSEAANRIVACLLRGDKV
                     IVCGHGRSYGNAELLVSHLLHRYELARPSFAAVQLQLSGVLAGVVAQDNELEAVYKKQ
                     LQAVAKEGDLFIVFSPVGNEECILQAIHTAKNQHLDLDIIALTGSNNDHTLGLLDESD
                     IEISAPSTNQLRVIESHHFYVNLLCELIDHLLFS"
     gene            complement(20022..20393)
                     /locus_tag="PXA71_000640"
     CDS             complement(20022..20393)
                     /locus_tag="PXA71_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HDL5104779.1"
                     /translation="MELFNKLINKREQGSFYEQKARVFLEQQGLRFVAANQAFKGGEL
                     DPIMQDGQTVVFVEVRQRKSNRFGSAVESIDYRKQQKWQNAANMWLLKQNQSLETANC
                     RFDVVAFEGNQTPVWIPNFLG"
     gene            complement(20368..22089)
                     /locus_tag="PXA71_000641"
     CDS             complement(20368..22089)
                     /locus_tag="PXA71_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HDL5104780.1"
                     /translation="MATILNHTMKKALVPTAIALFISACTSVNPVTESIKNEAYSSSE
                     FYINKADQTKEAEDKISYQLLAVRKLIDENKEYEAQNTFSEILTAEMNEVQKLEYALV
                     SAQLAALQGKNEQATSQLKAIQDPLLSSAQRLRYIQTQARIAANQKDVIGIVRARSQL
                     NNFYKMNRERQENNDIIWQTLRDANRGMLEKTVPEAGEMELAGWLALINIYNQNVTTP
                     AQMPQAINNWKAQYPSHSAVAVMPTELQGVSNFQQTQLNSVALLLPLSGDAKILGDII
                     KRGFNDAKADDSTAVQTFDTDSSDVNSLISQAKQQGANVIVGPLLKSRVDEMLLSPEI
                     QNVNILALNATENVRNIAQVCYYGLSPESEAQSGAEKIYQDGNSVAIVAAPQDDYGNR
                     SAEAFAKRWRQLTNSDADVRYYNQPLDAVAAIQNAGVSKAALYILGNAEQVLEIKQGI
                     DSSTLKDRLAIYTSSRSNSPNNGIDFYTSMEGVKFSEVPLLADQSSSEYKKAENLANS
                     DFSMMRLYAMGADAWSLATKFNEFRHIPGYKISGLTGELKAGQHCNIERSLSWMQYRN
                     GAIQQAY"
     gene            22163..23035
                     /gene="rsmI"
                     /locus_tag="PXA71_000642"
     CDS             22163..23035
                     /gene="rsmI"
                     /locus_tag="PXA71_000642"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDL5104781.1"
                     /translation="MKNRQNSSGINPNYGILYIVATPIGNLGDITQRALDTLSSVDLV
                     AAEDTRHSGLLLSHYGIKKPFFALHDHNEQQKAVVLVEKLAKGENIALISDAGTPLIS
                     DPGFHLVRHCRQAGVKVVPIPGACAAVTALCASGIASDRFCFEGFLPAKTKSRCDKLT
                     ELENEPRTLIFYESTHRILDTLADMQTVFGEDRYVVMAREITKTWETIYGDQLGNLIE
                     WLNEDSNRIKGEIVLVVEGKPQSSEEAFSSQAIKLLTLLCQELPLKKAAAIVAETFGY
                     KKNALYQYGLEHFE"
     gene            complement(23280..24446)
                     /locus_tag="PXA71_000643"
     CDS             complement(23280..24446)
                     /locus_tag="PXA71_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5104782.1"
                     /translation="MTNLLLAIIYLSFISLGLPDAILGSAWPSMHQQLAVPLSYAGVV
                     SMIMSIGTITSSLMSDKLTYHLGTGKVMVISVALTALALWGFSISDAFWILCLWAIPY
                     GLGAGAVDAALNNYVAVHYASRHMSWLHCMWGVGASIGPHILGYALLQGRGWEAGYFT
                     ISMLQIGLTLMLFCSLPFWKLRKQITAEINHSAKPMSLKETLKIPGVKYGILAFFGYC
                     GVEQTAGLWASSYFVMVKDVGLEQAAAFGSIFFIGITVGRGVSGFLTLKFSNRQMIKL
                     GSALILVGIAILCLPLGKYVTLASLIIIGLGCAPIFPCLIHSTPAFFGEDKSQSVIGV
                     QMASAYIGVLLLPPIFGFIANAISIQLLPLYLLLMFAIMAYAYRNLVRETSPSP"
     gene            complement(24598..26112)
                     /gene="putP"
                     /locus_tag="PXA71_000644"
     CDS             complement(24598..26112)
                     /gene="putP"
                     /locus_tag="PXA71_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDL5104783.1"
                     /translation="MFGLDPTTIMFVVYILGMIAIGFIAYRVTNNLSDYILGGRRLGS
                     FVTALSAGASDMSGWLLMGLPGAVYAGGLIEGWIAIGLTIGAYLNWKLVAGRLRSHTE
                     HSGDALTLPEYFHNRFGDKTRLIKILSAVIFLLFFAIYCASGVVAGARVFENLFGLPY
                     HQAIWYGAVATILYTFIGGFLAVSWTDTIQASLMVFALILTPFFVMYNLGGFDEMQAL
                     IDRAGEMAQKDYNDIFTGTSVLGIISLMAWGLGYFGQPHIVVRFMAAESVKSLENARR
                     ISMTWMIICLLGAIGIGYFGMAYFFGNPEQVGNISKNPEQIFIELAKLLFNPWVAGIL
                     LSAILAAVMSTLSAQLLICSSAITEDLYKGILRPQASDKELVWLSRLMVLAVAALAIY
                     IAQDPDSKVFGLVRNAWAGFGSAFGPVVLLSLFWKRMNGFGAIAGMLTGALIVHFWGD
                     ITLKLALPEIYSMIPGFIAATLMIIVVSLITPMPSKAVLDTFDRANKAYLAEVK"
     gene            complement(26206..26994)
                     /locus_tag="PXA71_000645"
     CDS             complement(26206..26994)
                     /locus_tag="PXA71_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDL5104784.1"
                     /translation="MNAKKEKESSGNQSLIRGLTLLELLAKFPNGCPLAHLAELSGLN
                     KSTVHRLLQGLQQEGYVRPAPTAGSYRLTTKCLAIGQRALSSINILHIAAPHLEALNL
                     TLGETVNFAMRENDHAILINKLEATTGMMRTRAYIGQQMQLYCSGMGKLFLAYGSADY
                     IPQYWQTKSDIIQKLTVNTITTIDGMQTELETIRRQGFAMDNEENELGVSCIACPIFD
                     HQQKVHYAISVSLSTARLNQLGRENLLPAIQETAEKISAELGGR"
     gene            complement(26991..27569)
                     /locus_tag="PXA71_000646"
     CDS             complement(26991..27569)
                     /locus_tag="PXA71_000646"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDL5104785.1"
                     /translation="MNQSSLTDLRSQLRQSMRLKRQSLTAGQQTQAAESIIPQALSLI
                     ESYQASHIAFYLPFNGEISPIPLMEQLLQQGKKLYLPLLHPFTSGQLLFVNYNCKTIL
                     KFNRLGIQEPILDVRNILPLQELEMIFTPLVACDKAGNRLGMGGGFYDRTLAQAPHLI
                     SVGLAHECQQVEQLPIESWDMPLDHIILGAAK"
     gene            complement(27571..27762)
                     /gene="ssrS"
                     /locus_tag="PXA71_000647"
     ncRNA           complement(27571..27762)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="PXA71_000647"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(27867..28157)
                     /locus_tag="PXA71_000648"
     CDS             complement(27867..28157)
                     /locus_tag="PXA71_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HDL5104786.1"
                     /translation="MSANNIELQIFGQVLRLQCPVEQQEHLLASAQRLEERVVVLKEQ
                     SGIIQLEKVLAIVALNLNYELEQAQRQNAENKNVLVACIEQLDNSLGKFQSN"
     gene            28236..28793
                     /locus_tag="PXA71_000649"
     CDS             28236..28793
                     /locus_tag="PXA71_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein"
                     /protein_id="HDL5104787.1"
                     /translation="MAITDSQQFKQLVSQLQIDDTPAEFHGFLCGLIAGGIQDESWKT
                     LTYQFTNDGHAFSIEPLNTLTDFYQQLSESFSEANTLFSLWLPQNEEDGFALADGISE
                     WTNSFLLGLGVAQPKLQQETDEVGEAIDDLDEIAKLGYSDDDNNEELLEAGEEVLEYL
                     RVLALFLHSHFALGVPKTEEKPPLH"
     gene            28891..29955
                     /gene="hemE"
                     /locus_tag="PXA71_000650"
     CDS             28891..29955
                     /gene="hemE"
                     /locus_tag="PXA71_000650"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDL5104788.1"
                     /translation="MSELKNDRYLKALLREPVDMTPVWMMRQAGRYLPEYKATRAEAG
                     DFMSLCRNADLACEVTLQPLRRYELDAAILFSDILTVPDAMGLGLSFGAGEGPKFARP
                     VASLNDVNQLPIPDPEDELQYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTKIKKMLYAEPHILHKLLDKLADSVILYLNAQIKAGAQAVMVFDTWGGVLAHED
                     YKAFSLHYMHKIVDGLIRENEGRKVPVTLFTKGGGLWLEAIAETGCDAVGLDWTVDIA
                     DARRRIGDKVALQGNMDPSVLYASPERIEQEVKNILAGFGNGSGHVFNLGHGIHLDVP
                     VESPKVFVDAIHNYSKQYHK"
     gene            30102..30692
                     /locus_tag="PXA71_000651"
     CDS             30102..30692
                     /locus_tag="PXA71_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF416 family protein"
                     /protein_id="HDL5104789.1"
                     /translation="MRNPIHKRMERFEPWQNTTFMACLCERMYPNYQLFCEVTEQPEK
                     AKVFQNILNLVWEYLTIKGAKINFDNQLEKLEEIIPDVNEYAFFGVLPAQEACEALSE
                     LLHSIIAGSTLEQAIRISQISLGTVASYLEMQQDKELNEQELKNSEEIQEELDVQWQI
                     YRLLNECEKRDLDLIFELKDEIRSSGISNIGLNINQ"
     gene            30828..31100
                     /locus_tag="PXA71_000652"
     CDS             30828..31100
                     /locus_tag="PXA71_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005819506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDL5104790.1"
                     /translation="MNKTELIDAIAAGANLTKKDAKAALEATLDAISASLKAGDAVQL
                     IGFGTFKVNERKARTGRNPKTGEEIKIAAAKVPAFVSGKALKDLVK"
BASE COUNT         9245 a         6774 c         6026 g         9069 t
ORIGIN      
        1 accgcttgtc tcattactaa tctttattat tttacaaagc tatcaaaagt tagctcataa
       61 ttgtcgccat cacgactata ggcgatatag cgagggaatt tttcaccttc aaattttttc
      121 accgtaatgt cttttttatc actggttcta aacttgtagg taatttcttg gtaggttttg
      181 ccgcctactt ttacctcttt ttgggctttg cgtagctgca cattcggtgt tgggtaaagt
      241 tttttaccgt tagtagtttg aaaactgctc ggtaatttat cgtaatagct caactgaaag
      301 gctgtggtga acaaatcata agttggcata gtcagcgctt cttcttttag tggctctttc
      361 actttgccat attttaccgt tttagaatca atttctgcca tcgcataagt tttgccgtta
      421 cgggtatctc ggtagctcaa catatgaaat tgttcgtttt tttctgttcc cttcgcagaa
      481 aagacaatat tatataaagg cacattaatt tttgcctgaa tattatattg gccaccaccg
      541 ttattaaagt taatgtaggc tggcattaaa taatttgagc tgtatttcaa cttaaaattc
      601 tccgcactgg cgtttgaaat caagcccaaa gtgaccacga ttacgctcgc taacttctgc
      661 caaattctca tctatttctc ctctaaagat atactttcga acaaccttga aattgcattg
      721 ttatctcgta attgttccgc tttctccact tgtacccgtg ttaaatgtgg cgaaaaataa
      781 ttaataaaat catacatata gttacgaaga aaagttcctc gtttaaaggc gatttgcgtc
      841 atactcggtt gaaacaggtg acttgcattg atagcgacta agtctttatc cgtttccgta
      901 tgtgccattg atgccataat accaacccct aagcctaagc gtacataagt tttgattaca
      961 tcagcatctg tcgccgtaaa tacgatatta ggcaaaatac cttccttatt gaaggcatga
     1021 tctaaatccg attgccctgt aaaaccaaaa gtataggtta tcaaatcata tctacctaat
     1081 tgttcgacag tcaaattttt actttggttc acaaaagccg caagaggatg ctctggtttg
     1141 acaataactg aacgattcca ccaataacac ggcaataaaa ccgcttcatc aaataaatat
     1201 tgagcttctg tggtaatggc taaatccact tctccagcca ccaaagcatc ataaatttga
     1261 ttcggggagc cttggtgcaa atgcaaactt acttcaggat agcgagcctt aaacttctca
     1321 attacactcg gtagcatata acgggcttgg gtattggtgg tcgcaatgcg taagatgcct
     1381 ttgttgggtc gagtttgttc ttcagcaacc gatttaatgc tctgggcttt taccaataat
     1441 tcacgagcaa tcgccacaat tttttcacca gcaggcgtta gccccttaac gtgcttaccg
     1501 ttacgctcaa aaatattaat tcccaactca ctttccaaca aacgaacttg tttgctaatc
     1561 cccggttgag aagtgtaaag cacctctgcg gcctcggtaa tattcaagtt ctggtttact
     1621 atttcaacga tataacgtaa ctgttgtagc ttcataatga tttcccctct acaatcgcaa
     1681 taatctgttg catcgtatgc acttcgtaag ttggcttaat atccgtatca ttctctttac
     1741 taagcaaatt taaccaacaa gtatcaattc cagcattatt acctcctaaa atatcagaag
     1801 cgagggtatc gcctaccata agcactttag tacgatcaaa ttcgtccatt aatgcaaaag
     1861 cgtaatcaaa cacttggcga tcaggctttg cggcaccaat ttgttctgat atcactacaa
     1921 tatcaaaaaa atgtgaagtt tgagtattat ctaaacgttt ttgctgcaaa tcggtaaaac
     1981 cattggtgat aatgcccatt tttactttac catataaagc atttaacata tccattacac
     2041 cttctaaagg ctgactgacg aatgccatct ccgccattaa ctcttgatta agttgtagcg
     2101 gatctacgcc tgtttgagca gataatttta caaaacgtct ggtttgaata tcttgagcag
     2161 tgatctcatt attttggtaa gccacccaaa gtggtttatt taccgcttga aagtcttgat
     2221 aatcttgttc actaaaatca atttggtaac gagccagcat cgcttttaaa ccaagataag
     2281 aattaaatga aaacaaggtt tcatcagcat caaataatac ccattgatat ttcataatat
     2341 tcctttttta acttagataa caagcggtca aatttttcta atttttcgca taccgctgat
     2401 aaagccacgc ttaagcacaa cactctttca ttttttgctg aatccactca acaaaaaatt
     2461 gtactttctg aacttgggct gattgcgaag gatagacaac atagaacgat ttttcatcaa
     2521 acaatgtggt tgggaaaggc tctattaaag tacctttttc aatttcgtgc tgtgccaaca
     2581 actggttggc aatcgcaatg ccttgttggt gcattgcagc ttgaagcacc ataaaagtat
     2641 ggctaaaaat tgagccagtt tccgcatcta ctatatcttc tatatgcaaa tgttcaacca
     2701 ttcttttcca cttattatgg gtggaggaat gtaataaatg cttacctgct aaatccgccg
     2761 gtaaatgaat ggtattttgc gataaatact caggcgaagc taaaataaca atacgggatt
     2821 ccgtcaaacg gatagattcc agaccttgcc aatccccctt accataataa atagcaacat
     2881 ctgtttcttt acctaataat ccctcatctt gatcaacacc cttaatacgt acttccactt
     2941 ctggatattt ttcgtggaaa tccgccaaac gtgggactaa ccaatgcata ccaaatgttt
     3001 gtggtacgct aatagtcaga atttgacgac tactttgctg cctaatttta tctgttgcga
     3061 gagcaatttg ttctaataat ggctgaactt catagaaata ttgtgcgcct aactcagtta
     3121 attccagcaa acggttacgg cgatggaaca gggaagcacc taaaaaatct tctaatagtt
     3181 taatttggtg gctcactgca gcttgtgtga cgaagagatc ttctgccgct ttagtaaaat
     3241 ttaaatggcg tgcagcagat tcaaatgctt tcaatgcatt gagtggtgga agttttttgt
     3301 tcataatttt tcaatctaat agattactaa acaagcaact ctattatttt ttctgatagt
     3361 ttaaataaaa aaaattcgtt tgatgcttgc aaatagaaat aataaaatat ccgcatactt
     3421 agatggatag tttagaattt atttctattc ctaaatttta agtatgatgt tgtgtttgca
     3481 tattggtcta ggaaactaga ctagagtaac gaaagttact tgtttcactt cctgtatatt
     3541 ttgaaccgta ttggtttata accgcccact ttgggcggtt tttttctatg taaaaaaaca
     3601 gcacaaaacc tagatcgcat tctatattat tcgctacctt tattctagcc tttctgcttt
     3661 tttattcttt cactttaatc tattataaaa agaggtttta tagtatgcta aagcctattt
     3721 ttcatttgca ataattaccg agagttcttt tgagtaaacc gaaattaacc cataaccaac
     3781 agcgtagaat ccaatctaac catcataagc gtatcaacaa aaaagagatt gaatggcaag
     3841 atgaaatgtt aggagaaatg caacagggca tcgtcgttac tcgccacgtt aaacacgctg
     3901 atgttgaaac cgcagagggg caaattttcc gctgtaatat ccgccgtaca ttgaaaaatg
     3961 tagtggtggg cgatcaggtt tcttggcgta aaggtagtga gcaactacaa gggattagtg
     4021 gggtcattga agccgtcttc ccacgtaaaa atgaacttac ccgccccgat tattatgacg
     4081 gtattaaggt gatggcatcg aacatcgatc aaatcattat tgtatcagct gtgctaccta
     4141 cactttcgct gaatattatc gaccgttatt tagtgatttg cgaaacggcg aatattcctg
     4201 ccttaatcgt gctaaacaaa attgatttat taaacgaaag cgaacggcaa gcagttaaag
     4261 agcagctcaa aatctatgaa gagattggct atgaaaccct atgtttatcg gctgatacgg
     4321 gtgaaaatat gcaggcgtta caccaatatc ttgctaaagg tacgtctatt tttgtcggac
     4381 aatccggcgt ggggaaatcc agcctaatta accaactgtt acctgaagtc aatgctctca
     4441 ctggctcagt gagcgataac tcagggttag gtcagcacac caccactgcc tctcgcttat
     4501 accatttacc gcaaggcgga cagctgattg actcgccggg cattcgagaa tttggcttat
     4561 ggcatttaga acctgagcaa atcaccttag gctatcgaga atttcaatcg gttttaggca
     4621 cgtgcaaatt ccgtgattgc aaacacaaaa ccgacccggg ttgtgcctta agacaagagg
     4681 tcgaaaatgg cgaaatttct gcaattcggt ttgaaaatta ccatcgctta attgaaagcc
     4741 tgtctgaaac caaaagccaa cgccatttca gaaaagaaga agtataatga atgaatttat
     4801 ttaccctaac gcccgattaa tcgccggtgt tgacgaagtc ggacgaggac ctttagtcgg
     4861 agcggttgtg accgcagccg tgattttaga tccgaataac ccgattcagg gcttaaccga
     4921 ttccaaaaaa ttatccgaga aaaaacgcca agctttggca gaagagatta aagccaaggc
     4981 tctgagctgg tcgctaggac gtgccgagcc gacagaaatt gatgagctga atattttaaa
     5041 tgcgacaatg ttggcaatgc aacgtgcggt tgccggcttg catattcagc cggattttgt
     5101 gctaattgac ggcaatcgtc cgccaaaact gccaatgccg gcacaagcgg tggtgaaagg
     5161 agacagctta gtggctgaaa tcagtgctgc ttcgattatt gccaaagtcg cccgagatca
     5221 agaaatggac gaattagacc aacaatttcc gcaatacggc ttcgcacagc acaaaggcta
     5281 cccgactaaa ctccattttg aaaaattagc agaatttggg gcaacacctt atcatcgtaa
     5341 gagttttgcc cctgtaagaa aagtattagg tttaatcgat tagaaggaaa acacaatgac
     5401 tacagagtac caaaaaacga ttttcaccaa aatcatcaat aaagaaattc cggcaaatat
     5461 tgtctatcaa gatgaacttg tgaccgcatt tcgtgatatt gctccacaag cacccacgca
     5521 tattttgatt attccgaata aatttattcc aaccgtcaat cacgtgagta atgaagatga
     5581 attagcccta gggcgtttat ttacggtggc ggcaaaatta gcccaagaag aaggcattgc
     5641 cgaagaaggc tatcgcttag tgatgaattg taataaaaac ggcgggcagg aagtgttcca
     5701 tattcatatg cacttgttag gcggacaaaa actaggacct ttagtggcaa aataactatg
     5761 cgtatttcct actttgcatt tgcaattttt tcgatttttt tgaccgcttg tggtagcaaa
     5821 cctgtcagct atttaccaac cggctcagag cctattgtca atattgagtc tgacattgct
     5881 gaaaagatag agctggaaac gaatagcaag caatttagca ccacaaattt aactgaattt
     5941 ccgcttaatc ttacttataa attattttgg tataataaag atggggtaac acaatcccat
     6001 aacggtatat cagatagtat cggctggcaa catctatggt tgcaacctaa gcaaaaacag
     6061 accattgcac tcattaaacc gacggaagaa agccataatt accgcctcta tttacgaggc
     6121 gtaaaatagc aaaaaagcag agccaactgc tctgcttctt tatttatttc aaaaacgggt
     6181 tggtctgttt ttcccgcccg atagttgtgt gtggaccatg tcccggtatg atgatgaaat
     6241 catcatctaa atcaaacatt ttttccctga tcgtttccaa taactggcta tggttgccta
     6301 aatagagatc tgttcgacct atgctatttt ggaataaaac atcgccacta aaagcaatac
     6361 gattgtcaaa atcaaaaaaa ccgatatgac ccggagcatg acccggcaaa tgtcgaacgg
     6421 tatagctcag ctcgccgact tcgacccgat caccttcctc caaccaatga tccggcaaaa
     6481 agccatttac tggtggtaat ccaaattgtt ggcacatttc cggcaaacgt tcaaataaag
     6541 gtttatctgc aagatgcgag ccgaaaacct ctacttgaaa atgctctctc aacttttcca
     6601 ccgccataat atgatctaaa tgaccgtgcg taatcaataa tttctgaacc ttaagctgct
     6661 gagattcaac aaattgaata atgccttcgg cattatcgcc gccatcaata atagccgcat
     6721 tcttattttc gtcccaaatc accgtgcaat tttgttgaaa tggactaaca ggaataattt
     6781 gcaaattaaa cataaaataa gaccgcttgt tagcctctcc aagtgcgaac tgggccagta
     6841 tctacgtgaa caaagttact acgaggataa taacctacgc caccattatt caagctctca
     6901 gccgcttgtt ttactttata taacggcaca cctgatactt ggaaatctac tgcttgccca
     6961 agaatatggt aactatggct ggcaacacca cggcttctac gacgaagtct tgcatttgtt
     7021 tgtgcggagc gatagccact taatactagg atttccgcat tatggaaacc taaacggcgt
     7081 tgtaattgat tcaatttgac aaataatttt ggatcaattg ctttaacttg attgatatga
     7141 cgatcccgca ttaaatagtt taactggctt aaatcggttt tatttaatcc acctgcacca
     7201 aatttagcag tgtaagtatc gcctgtattc acattacgaa aacgtaacgc agctggggca
     7261 ggagtagaaa gcgctgccat tacttgaccc ggcagaaggc tagcccctaa aacaagtccg
     7321 ccgagtgata gccacttacg gcgttgaaca ttaatttgtt tcattttttc ctcataggtt
     7381 agctaatgat ttatagaaaa tcactcacaa atgagcgaat ttctatacac catacttaaa
     7441 gtaaaaattt acaatcgtaa atttatgtaa gctatatttt caaaaagttc caagaagatg
     7501 atatcttctt ggaatttatc agaaatagca cgattaaata atgctcttta attttcccca
     7561 attcacagaa tgttgtggga ttttggcatc aaagttataa atgtccggaa gggtttgcac
     7621 ttttccacct tcaacccaag ccgtcacata atagagataa accgggttat ctgaacgaat
     7681 ctgagccgag gtcgtcttct tactgcctaa gacttgattc tttttatcag atccccaacc
     7741 cgcttctttt aataaaatgg ttgccaattc atcagatttt tctacacgga cacaaccaga
     7801 acttaacgca cgccccgttt taccaaataa tcctctattt ggcgtatcat gcaaataaat
     7861 tgcatccgaa cttggcatat taaatttata acgtcctaaa gcgctatcat cacctgcttt
     7921 ctggcgaata cggtatggtg aacttttagc atttaaatat tgtgaccaat ttacgctacg
     7981 cggattaatt ttattgccac tactatcaag aatttcgaaa ctagcacgat ctgcataacc
     8041 tgggtcacgc gctagtttag gaataatatc tttagtcata atactagtcg gtacattcca
     8101 aggtggattc actaccacat tgctcagctt actatacatt accggtgtac ggcgatcttc
     8161 tcgcccaaca atcactttag attgaagagc taaattacca tcacggaaat aatataattg
     8221 atagcttggg atattcacaa aaattccatt gttaaaactt ggaataatac gtaaacgttg
     8281 agcattgagc gctaatttat agaaagaagc cccattaccg ccaccagcta cctccgtaac
     8341 agctttacct tttttggctt taggtgctga agagcctcct gccattgcca atactctctg
     8401 tgccgtatca cgatataaat ggtttcttgg aacaaggtct gttacaaact gcccagaatc
     8461 gccttccctc acggcattag tccattggaa gatttgctct gaagagggcg attttggtac
     8521 ataactgcct aagttatata accaattatt tgcattttta aacacatttt tgttgtaata
     8581 caaataatct aagaagccat cagttaataa aatatctcta cctaaacctt ccggttgatt
     8641 taagatttgc tgcaatgcct tagctgattt agaggatacc ccacttactg caaataatgc
     8701 atattctttc aaaaatgctt tttctgcggc tttatcattc cacattgtcg caaattcact
     8761 gtctaaataa accttagttg ttgcttggct cagcaataag gcattattac ctatttcttg
     8821 cttaattctt gcttccgctt ctgcaaattt tcttgcttgc tcttgacgaa tttgttcctg
     8881 ttctaacgca taatcggcct gttttaccaa ttctgcagca cgagcctgct gagctgcaaa
     8941 acttaattgt ggtaaaatat tatcttgtac aacaggctca gaagccacct gagcaactgt
     9001 ggctgtttca gccaaagcca tgccagaaaa cgccaccata ataggtaata atttaaaggt
     9061 tttcacccac tcttcctctt aatatttgca aatttataaa aaaataaacc gcttagcgga
     9121 gctaagcggt acgttatgtg cgcattataa acacatttat gattttttat caaattctga
     9181 ccaatcaagc atcatctgtt cagcttcttt taagaaaaag tccggtgctt catagtcttt
     9241 tggtaaatca tcaatatctt ttaatgcttt tttgccttca cgggcaaaac gagcattaat
     9301 atcttttaag cgcttgcttt catctgcttt attttctttc aggcgttctt ctaaatttaa
     9361 cgataaaaac ttacgctcat cacgttcttt tcgaatcgca atattctcgt ttaatactat
     9421 aaactctggg tttttagcaa tacgctcttg atgtttcgct gttaatgcag caaccgcgtt
     9481 acgagcattc ccagcctctt tataattagc tgctggaatt ttatcccaag gaagcgcatt
     9541 atcttcaaaa ctttcacctg tttttgcagc attaatgatt tccgggaatt taatatccgc
     9601 ctcaacccct tttagctggg tacttccacc attgatacgg tagaattttt gaatcgtata
     9661 ttggataaaa ccaagaggct cttgatccaa atcatataca aaattcaatg aacggctctg
     9721 ttgaacagtt cccttaccaa aggtttgttg ccctacaata attgcacggt tgtaatcttg
     9781 cattgccgca gcgaagattt cagaggctga agcactatgg cgattaatca tcaccatcac
     9841 ttttccatca taaactgatt ttgattctgg atcttcgtgt actttgatac gattgaatgc
     9901 gtcttgtact tgcactacag gcccatcttt aataaataaa ccagttaatt caatcacttc
     9961 agttaacgaa ccaccaccgt tttcacgtaa atcaatgatc aatccttcaa catttttttt
    10021 ctctatttga gtaagtaatt tacgtacatc tgaagtcaaa ccgatataaa aagtagggat
    10081 cttaattacc cctacatttt ttccatctac tttttctacc gttaatttag cagcactatc
    10141 ctcaatacga actttatcac gcacaagggt aataatttta gtttttccac ctttttcagg
    10201 ctcaatttct aaacgaactt tagtgccttt tttacctttg attttatcga ctacattatc
    10261 caaacgccaa ccgataacat cttcaatctc acctctctca ccttgaccta caccgacaat
    10321 tttatcgccg actaccagct tcttactttt agcggcaggg gctcctggca ctaatgctct
    10381 aatgctggtt acatcatctt cttgggttag cgttgcacca attccttcta gcgacagatt
    10441 catgctctct tggaacgctt ttgccgcacg aggagacaaa tagctagtgt ggggatcgat
    10501 ctcacgagag aatgaattta agtaagtttg taaaatatca tcagccttaa cttgagttaa
    10561 acgcttaatc gcaaagttat aacgtttagt gagtgttttc ttaatttcag gccatttttt
    10621 atctttaaga tataaattga taatatcgtt tttaactcgc tgctcccaaa gtgtatttgc
    10681 ctcttctaca ctttttggaa atgcggcctt ctcacggtca atctcaattt catcattccc
    10741 ttttaagtca ggctctttat ctagtaaaga taaggcatag ctataacgct cataacgacg
    10801 tttagacatt aactcataca ttgcaaatgc tgcatctaat ttaccagcat ataaatcatc
    10861 atctaatgtt gtagcatatt tactacgcat ttcatcaata tcggcttgaa gaaaagtatt
    10921 atgagaagga tcaagccaat cgacatagcg gttaaaaatc ttccctgcaa actcatcatt
    10981 cagttgaaat ttatgataat gcgattgagt taatcgggct gttacacgct tggttgataa
    11041 gctatgctgc tcattaggtt ttggcatcac aatcgcactt tctttaatgt ccggctgaac
    11101 ggcaaaagcg tttcctatca ttaaacctag ggctagggca aaaattttat ttaatcttgt
    11161 taatttcatc ttcttttcca aataatcaag cggtcatttt tttgcaaaat tttactaaaa
    11221 tccgaccgct tgtaagcaca aagcgacttg aaaactattt acgaccgaat ttatctgcta
    11281 atgcagctaa tttttcttct gaagctttag gtaaattatc tattgctttt ttcgccttaa
    11341 attctgcacg ctttttcgca ttttcttcac gtgctttctg tttgaagtac tctttacgtt
    11401 gtgctttacg ctcttgtgct ttacgttctg caaccaccgc tttcgcagca gccaaagctt
    11461 ctgcggcgtg agtagcttcg tcttctgtta ccacgccaac ttcttcaccc tgtaagccga
    11521 cacgagcaac attagcttgg ctggcagcca agtaacgcca agaattagtg taattccgca
    11581 atacttggcg caataacgtt ttactgattt tctcatcatc ttttaatgct tcagctaatt
    11641 cctgaaacaa cccaactttc aatggtttta cttcaccttc aagcgtgaaa caaagcggaa
    11701 atttctccgc taaataagca atcacttcct tggtacttgg attggtttta ttctgagttt
    11761 gttctacttt ttgctcaatt tgctctgaca taataagtcc tatttaataa aaatctaata
    11821 attagataag tgaaaatcta actggatact atatttgatt tataaggctt cgtccatata
    11881 aattccacat tacgtttaca aaagagatag actctttttt catttgaatg ttcataaaag
    11941 tataaaaatg atttgcttaa aaaatgaata agtggtgtaa tggctcaagc tgttcgtgcg
    12001 ttaattaaag ttgaatcttg ttagttattt tcctcaaggc aagtgattga tagatacgtc
    12061 tgtaatatcc cgtttagcta tcttttatca ctttttgtat ttatataagg aaaattttat
    12121 gtcagcaatt accggcacag taaaatggtt caacgccacc aaaggttttg gttttatcac
    12181 ccctgatcaa ggtggcaaag atgtattcgt acacttctct gctatcgaag caaacggcgg
    12241 ctaccgcaca ttagaagacg gtgctaaagt acaatttgaa atccaagatt cagagcgtgg
    12301 agcttcagcc gtaaacgtga aaacaatcta atttcagcaa attcaatgaa tttcgataaa
    12361 aatgccgaca acttgtcggc atttttgcta tcaattaatc tgtacttcaa accttttcgg
    12421 cacaataaaa atggcaggta gggtaaaaat tgccatcaac caaaatgtca ggcttgggga
    12481 atgttgatag accattccgg caataaaggt aaatactgcc ataaaagcac agcttgccaa
    12541 gccaaaatag agaccttgta atttcgtcac acgctctgcc gattgcatcg aaatatagcg
    12601 aatcatcgca atatgagccg ccccgaaggt aatagaatgt agcatttgca ttacaataat
    12661 cagcacgatc tctgtagtac tacccattat tgcccaacga atcactgcaa aaacggcagc
    12721 taaaatcatt aaatggctga ttttccacga tttaaacaag cgtttagaga ccaaaaagaa
    12781 caaaatttcc gccaccaccg ccaagcccca aaacaggcta gtcattgcgg ttgaaatact
    12841 ggcatttgac caatgaatgg tgctgtaagt gtaataagtg gcgtgcgagg ctgaaattaa
    12901 cgacaccgcg atcaacattt ttaaggtttc cggctctttc aataattggc gataagttac
    12961 gcttgaagta ttggctttat taccttgttc ttcaaacccg actttgggcg tagcaagctg
    13021 ccctattcct aaaaaaacca agaaaccgat gataatccac accaccgaat tttcaccaag
    13081 caagccgata agatagccgg cagaaagtga gcctaccaca aacgccattg agccgaataa
    13141 ccttgctctg ccgtaatcca gcccgatctg atgttgccaa attgaggcaa tgctatcggc
    13201 tatcggcatt gcccccgaat tgaacatttg aaacaacatt aacaccggaa aaagtagcca
    13261 aatgaaatcc cctgaaaaca gcaacgccgc cgcagccgca atattcagcc aagttaaact
    13321 gcgggcggtg ggaatgagtt ggctcacggt ttttacccgt tgtgaggcaa gcatactgcc
    13381 ggcaaagcgg aacaaatagc caacggcggc aaataagccg atcatttcag tcgaatagcc
    13441 gtgatgttta agccacactg gcaaaaacgg caacaacacg ccataggcac aaaaaaagcc
    13501 aaagtaatta aatgccgccc attggaacgg ggaaactttc atcataacga ttgctccatt
    13561 tctctggctc gatgaattgc cgcccacatt gcatcatcaa cggttttagc aagatcgtgc
    13621 tgctcaaaca cctcaagggc tttcgccgtt gtgcctccct ttgaggtcac attttcccgc
    13681 aaggtcgaaa gtggcgtagt cgggttcgct tccaccaatt tcgccgcccc caatgcgaca
    13741 gattgtacaa gcgttcttgc gtcctgctcg gaaaagccca tttgcaccgc actttgctgc
    13801 attgcctcca taaaacggaa gaaatacgcc gggcttgagc cggttatcgc aataatgtgg
    13861 ttgatttgct cctcggtttc cacccagtaa catttaccaa cggctgacat caactgttcg
    13921 gcaaattggc aagcggtcgg atttaccgat ttttttgcaa ataatccggt cattccttcg
    13981 ctgattaaag acggggtgtt tggcatcgtg cgaatgatat ttttcgcact cggcaacagc
    14041 gtttccaagc gttgcacaga aatacctgct gctactgaaa tcacccattt gttggaaaaa
    14101 tcaacatcgg caaactcggc acacacttgt gccatcatct gtggttttac cgccagcacg
    14161 atcacgtcag cctgctctac cgcctcacga tttgcaaaat ttgtcgcaat tccgaccgct
    14221 tgtaactcct ctcggcgagc caaattactt ttattgcacg caatgatttg ttcggcagaa
    14281 taaccgcttt ttaataagcc ttgaataatc gcatacgcca tatttccggt gccgataaag
    14341 gcaagttttt tctcgttcat tcgcaaattc tctactgtgt tgggttgagg tctgttaaaa
    14401 taacactatt ctacacccga taaaggatat gcaaaaatgg tttggttcaa aaatgtgatg
    14461 atctataaat taaccggcga gctggcgttg gaaagcaata gccttaacga gttacagcaa
    14521 gaaacccgct ttaccccttg cagccagcac gatatgagca aattcggctg ggctacgcca
    14581 cttaccggct cggatttact gcatttctca caagcgaacc aatttttgct gatttcacac
    14641 aaagaagata aattattacc tgccaatgtg gtgaaagccg aaaccgagca acgcattgca
    14701 gaactggaag aaaaagaggc tcgtaagctg aaaaaaaccg aaaaacaagc cgtgaaagat
    14761 caggtcgttt ctgcgttatt gcctcgagca ttcagcaaac atcaattcac cgctctttgg
    14821 ttggatttag ataatcagtt ggtttatgtg gatgcagcct cgagcaaacg ggcggaagat
    14881 acgctggcgt tactgcgaaa aacacttggc tcgttgccgg ttgtgccgat ttcctttacc
    14941 ctaccgccgg cagaggtaat gacgaattgg atcgccaaag ggcatacgcc aagttggttg
    15001 aatttgttgg aagaggcaga actgaaatct ttcgataccg acagcattat tcgctgtaaa
    15061 cgccaagatt tagagacgga agaaatcgcc cggcacttgc aagcgggcaa atttatcaca
    15121 aaacttgcga ttgaatggga agggcatttc aattgcgtgt taaatgaaga cgccacgctt
    15181 tcacgcctga agtttgccga tgaagtgcga gagaaaaatg acgatattct caaagaagat
    15241 gtggctcaac gctttgatgc cgatttctta ttaatgaccg aagagctgaa acttttcacc
    15301 gaaaaaatga ttgccgaatt tggcggaatt aaatccagaa tttagaaaaa aatttaagga
    15361 aagcaatgtt agatcaaacc attatcgacc aatatgacgc cttgattttt gatatggacg
    15421 gcacattaat tgacacgatg ccaagccacg ccaaggcgtg ggaaaaggtg ggcgaagtgt
    15481 taggctaccc aatcaatcca aagccaatgt acgaactgag tggctcaacc acttttgtga
    15541 ttgcccgaga aataatgcaa cgctccaata tccccgagca ttattttgag caagtggtac
    15601 aactaaaacg ggaatttggg attgaaatgg tgttagccaa tgccactctg ttgcctgcct
    15661 ttgagattat taaagctaac gttggcaaaa aaccaatggc aatcggcaca ggctcacacc
    15721 gtgcaatggt ggaattatta gaccaaaaat ttaacttacg tcaatatgtt tcggttattg
    15781 tagattctga tgatgtaagc aaccataagc cagcccctga aaccttttta aaatgtgcgg
    15841 aaaaacttgg cattgcccca caccgctgtt tggtgtttga agatgccgat ttaggcgtgc
    15901 aagccgccct caacggcaat atgaacgtgt ttgatgtacg tacgaatacg ataactcact
    15961 caacccgtta aaaatgatag gtttatatga aaacagaatg gattaaacat ttaattcaac
    16021 aattaaccac gctttccaaa gccatcgaaa actactttac cagcggttca tttggggtga
    16081 aattctaccc ttttctaatg cacccttgtt ttcgtaaaag ctgtgccttt ttgattttta
    16141 ttattgctat ggtttcaagt tttagcgggc tattttattt ggtggcggaa cacatcacga
    16201 ttttatttag cgaaagatcg ctcaccactt acttccacca tagcaccctt gaattgatga
    16261 ttccagtcgg cacaatgata gatgaaaaaa tcagcgaatt atcaccactt tcggtggtaa
    16321 tgcgttcaat gtttgtgcta caagcagtcg tttttttctt tatttatgca atcggcatca
    16381 cccacattgc tcacaacaaa ttgcgggtca tcggcttatt gctttcgcta tgctttgcga
    16441 ttggctgctc actagttgcc ggtattcagc caagcagtcg tggcgaattc ggcatttaca
    16501 atttaggggc aagcattacg tttttaatcg gcaatttaac gctgatcatc gcaggcttcg
    16561 atctctacca cccttcaatg caatttttta aacgctttag cattggtgcg ggcgttatcg
    16621 gggcaatctg tattttaatc acgattttcc taccaaccct gtttagcccg ttaattgaac
    16681 gagcaggtat ttataccatt atgctgtggg aaattttagc cggttttgcc atcattaaac
    16741 gcctgttgaa attgccctca ttcagacaac aaggataacc aatgaaacag attcccttta
    16801 ttcaacgcta tgctcaactg attgagctac cgaccatttc cagccttgtt gccgaagaag
    16861 atttatcgaa ccgccgtttg attgaattgc tcgccacttg gctggcagat ttcggcttta
    16921 aaaccgagat tttagcggta gaaggcagcc gtaataaata caatttactt gcgacctatg
    16981 gcgagggtga gggcggctta ttattggcag ggcataccga caccgtgccg tttgatgaag
    17041 gaaaatggcg cttcaatcca ttccaattaa ccgaaaaagc aggcaaactc tacggcttag
    17101 gcacggcaga tatgaaaggc tttttcgcct ttgtggtgga ggttgtgagc caactcgacc
    17161 taacccaaat caaaaagccg attcgcattc ttgccaccgc tgatgaagaa accacaatgc
    17221 tgggggcaag aacctttgct cagcacagcc acattcgccc cgattgtgcg attattggcg
    17281 agccgacctc gctcaaaccg attcgagccc acaaagggca tattggcgaa tcggttcgca
    17341 ttaccggcag aagcggacac tccagcgacc ccgccaaagg cattaatgcg attgaattaa
    17401 tgcaccaatc tatcggttat ttaatgaaaa tgcgtgatga actgcgagag aaataccaca
    17461 atccgctgtt ccaagtcacc cacccgacaa tgaacttcgg caatattcac ggcggcgatg
    17521 ccattaaccg catttgtgcc tgttgcgaat tgcaatttga tatgcgacca ctaccgaata
    17581 tggcggtgca agatttgtat gcaatggtaa acgagcattt aaaaccgatg ctggaacaat
    17641 atggcgattt aattgaaatc cgccatttac acgatggaat tccgggctac gaatgcgaac
    17701 actcggcaca aatcgtgcaa gtggttgaaa agctactggg cgaaaaatgc gatgccgtca
    17761 attactgcac cgaagcccca ttcattcaac aactctgccc aacgctggta ctaggccccg
    17821 gctccattga acaagcccac cagcccgatg agtttttgga aatgaaatat atcgaaccga
    17881 caaaagagtt attgactaaa ttgatttatc atttttgtgg ataaatcaac agaaacaagc
    17941 gctcattttc gccatacttt ttgcaaaaga atcggcaaaa atgaccgctt gatatttagt
    18001 attgagtgac ctataaactt ccatacttca tcattgattt aaggagattc tgttagatag
    18061 gtattaatct ctagctaggt cttggataca aacggcgaga atgaattata gtaataatat
    18121 atactttttc taggtgtatc tcatagacaa tacgataatt gcggcagaat gtttctaatg
    18181 tgccatcttc tctacgtcgc cctattgtag gcataaatgc aatgagatcg agtttatttt
    18241 gtaattgttc ccaaagtgaa actgcgctca accaatgccc tgtataatct tctaccgact
    18301 gtaaaatctc aatgacatta gaccttgcgg taagtgacag ctcccaagat ttaggcataa
    18361 ttaacctcaa acaaattttc attttctcgt aattgctgac gtttctgcat atccgcaaat
    18421 aaatgattta attcgttatt gatttgttct ttggtaaagg tttctcctcg agctattgct
    18481 tcttgaccag ctttaatttg ctctgcaaga aactcatcat atccttgttc tttgaatagc
    18541 atattctgct cctttgattt gtgtcttgat tccactatgt tcaagacata gtttaagttt
    18601 aaatctacgc tcaaagcaat gaagagtcaa gggaatcctt atgttgatag ggtgtgcata
    18661 tttttcgagt caaatgaatt aaaaatcatc attacgatca cccactcata gattttatct
    18721 tcctatctaa ggtcatcttc ttatatcaaa caagcggtct aaatttgcaa aaaaatgaca
    18781 aatttagacc gcttgtgagt tacaaaaata taaactaatt gagcttatca attactgcgc
    18841 ataactaaat actttcacca ctttggttac tccacctaca ttgcgagcgg cttcggcggc
    18901 ggcatcagct tggttttggc tgactttgcc cattaaaaac acttcgccgt tttcggtgac
    18961 gactttcact tcggtggctt ttacctcgct atttactaac agtttggatt tcacttgggt
    19021 ggtaatccag ctgtcttgtg taatctgtcc aaagccgatt ttttcgcctt ggcggatttc
    19081 gttgtaaatt tccgtcacgc cctccgcccc agcagcgagg tttttcgcat tttccactac
    19141 gtccatactt ggtgcttgcc cgattaataa cactttgccg ttgtaagcca ccacgttaat
    19201 gcgggcttct tgtttgattt gctcgtcttt attaatgttg taagcgactt tttcttctaa
    19261 aatttcatca tcaacttgcg tgccggtggt gcgtgggtct gtcgccactt tagttgcaac
    19321 cgccgcagaa gtcaccaccg ccgtggtgat acaaccttgt aaagagataa aacctaatac
    19381 taataggctg ccctttaata gtttatttgc taatttgttc ataatctctc cttacgaaaa
    19441 tagtaaatgg tcgataagtt cacataataa attcacataa aaatgatggc tttcaatcac
    19501 cctcagttga ttggttgaag gggctgaaat ttcaatatca ctttcatcta ataagccgag
    19561 tgtgtggtcg ttattactgc ctgttaaagc aataatatct aaatctaaat gttgattttt
    19621 cgccgtatga atagcttgca atatacattc ttcattaccc acaggcgaaa aaacaatgaa
    19681 gagatcaccc tcttttgcaa ccgcctgcaa ctgtttttta taaacagcct ctaactcgtt
    19741 atcttgtgcc acaactcctg ccaatacacc gcttaattgc agttgtacgg cagcaaaact
    19801 cggtcttgcc agttcataac ggtgaagtaa gtggctgacc aataattcgg cattaccgta
    19861 agagcgaccg tgtccgcaga cgataacttt atcgccacgc aacaaacagg caacaatgcg
    19921 gtttgccgct tcacttaatt tagccggcaa tagctcagag gcggaaattt gggtttgaat
    19981 actttcggta aatctatctt ggattttatt taacattctt tctaacctaa aaagttggga
    20041 atccacacag gcgtttggtt tccttcaaaa gcaaccacat caaaacggca atttgcagtt
    20101 tctaaacttt ggttttgttt aagcaaccac atattagcgg cattttgcca tttttgttgc
    20161 ttgcggtaat caatactctc aacggctgaa ccgaagcggt tgcttttacg ctggcgaact
    20221 tctacaaaca caacggtttg tccgtcttgc ataatcggat ccagttcgcc acctttaaat
    20281 gcttggttag cggcaacaaa acgaagccct tgctgttcta aaaacactcg ggctttttgt
    20341 tcataaaacg agccttgttc ccgtttatta ataagcttgt tgaatagctc cattgcgata
    20401 ttgcatccaa gataaactac gttcaatatt acaatgttgt ccggctttta actcaccggt
    20461 taaacctgaa attttgtagc ccggaatatg gcggaattca ttgaatttgg ttgccaatga
    20521 ccacgcatca gcccccattg cgtataaacg catcattgag aaatcgctat tggctaaatt
    20581 ctcggctttt ttatattcac tagaactttg atcagctaac agtggcactt cactaaattt
    20641 taccccttcc attgaagtgt aaaaatcaat gccgttattt ggcgaattac tgcgagatga
    20701 ggtatagatc gctaaacgat cttttaaggt tgagctatca ataccttgtt taatttctaa
    20761 tacttgctcg gcattcccca aaatatataa agctgctttg ctcacacctg cattttgaat
    20821 agcggcaacg gcatcaagcg gttggttgta gtaacgcaca tcagcatcgc tattggtaag
    20881 ctgacgccag cgtttggcaa aggcttctgc cgagcggttg ccgtagtcat cttgaggggc
    20941 cgcaacgata gcgacactat taccgtcttg ataaattttt tccgcccctg attgtgcctc
    21001 agattcagga gataaaccgt agtaacacac ctgagcaata ttacgcacat tttcagtggc
    21061 attcagtgcc aaaatattca cgttttggat ttctgggcta agtagcattt catcaacacg
    21121 agatttgagc aatggcccga caatcacatt tgccccttgc tgttttgcct gtgaaattaa
    21181 ggaattaaca tcagatgaat cggtatcaaa agtttgcact gcggttgagt catcagcctt
    21241 agcatcatta aaaccacgct tgataatatc acccaaaatt tttgcatcac cacttagagg
    21301 caatagcaat gcgacactgt ttaactgggt ttgttggaaa ttactcaccc cttgtaattc
    21361 cgttggcatt acggcaaccg cactatggct cgggtattgg gctttccaat tattaattgc
    21421 ttgtggcatt tgtgccggtg tcgtcacatt ttgattatag atattaatta atgccaacca
    21481 accagcaagc tccatctcac ccgcttcagg cacagttttt tccagcattc ctcgatttgc
    21541 atcacgcaag gtttgccaaa taatatcgtt attttcttgg cgttcacggt tcattttata
    21601 gaaattgtta agttgcgatc ttgcacgcac aatgccaatc acatctttct gattggcagc
    21661 aatacgggct tgggtttgaa tataacgcaa acgctgtgcc gaacttaata gcggatcttg
    21721 aatggctttt aattggcttg ttgcttgctc gtttttccct tgtaaggcgg caagctgggc
    21781 ggaaaccaag gcatactcta acttttgcac ctcgttcatc tctgcggtca gaatttcact
    21841 aaaggtattt tgagcctcat attccttatt ttcatcaatt aatttgcgta cagctaaaag
    21901 ttgatacgaa attttatctt ccgcttcttt ggtttgatct gctttattaa tatagaattc
    21961 cgagcttgaa taggcttcat ttttaatgga ttcggtgaca ggatttaccg atgtacaggc
    22021 agaaatgaat aatgcaatcg ccgttggcac caatgccttt ttcattgtat ggtttaaaat
    22081 agttgccatt gtcagatcct caatagaata taatgtgcta aatttaatgt gaaatcttac
    22141 ttatcaaacg agctaaaagc aaatgaaaaa cagacaaaat tcatctggaa tcaacccaaa
    22201 ttacggaatt ttatatattg ttgccacgcc tatcggcaat ttaggcgata ttacccaacg
    22261 ggcgttagac accctttcat ctgtcgattt agtcgccgcc gaagacactc gccacagcgg
    22321 tttattgctg agccactacg gcattaaaaa accgtttttc gccttgcacg accataatga
    22381 acagcagaaa gcggtcgttt tagtcgaaaa attagcaaaa ggggaaaaca ttgcgttaat
    22441 ttccgatgcc ggaacgccac tgattagcga cccgggcttt catcttgtcc gtcattgccg
    22501 ccaagccggg gtaaaagttg tgccgatccc cggggcttgt gccgctgtta ctgccttatg
    22561 tgcttcaggc atagcttcag accgtttttg ttttgaaggg ttcttaccgg caaaaacaaa
    22621 atcccgttgc gataaactta ccgagcttga aaacgagcct cgcacactga ttttttatga
    22681 atccacccac cgtattttag acactcttgc cgatatgcag actgtttttg gcgaagatcg
    22741 ctatgtggta atggcgcgtg aaatcacgaa aacgtgggaa accatttatg gagatcaact
    22801 gggtaactta attgaatggc taaatgagga tagcaaccga attaaaggcg aaattgttct
    22861 ggtggttgaa ggtaaaccgc aaagtagtga ggaagccttt tccagccaag cgatcaaatt
    22921 actgacatta ctctgccaag aacttccgct taaaaaagcc gctgccattg tggcagaaac
    22981 cttcggctat aagaaaaatg ccctgtatca atatggattg gagcattttg agtaacagac
    23041 aagcggtcag attttgtgag ttttttgcag attggcactc ccctctctct gaaaaatgtt
    23101 tctgaacgaa acatttcccg gtctcaatac tcgctacgct cgctccttcg gagccgttgg
    23161 caaagccaac gttcaaatgt aaacatttgt cccataaggg gagagagcta aattattcgc
    23221 ttgtcgaccc ctctccactc gtgggagagg gacagattct tcttcgttca gaagaaaaat
    23281 cagggagagg gggaagtttc tcgcactaaa ttccgataag catatgccat aatcgcaaac
    23341 atcaacagca agtaaagcgg taataattga atgctgatag cattagcaat aaagccgaaa
    23401 atcggtggca ataacaggac gccgatatag gcacttgcca tttgcacgcc gatcaccgat
    23461 tgagacttgt cctcgccgaa aaacgcaggg gtcgaatgaa ttaagcacgg gaaaatcggg
    23521 gcacaaccta gcccgataat aattaaactt gccagcgtaa catatttgcc taacggcaag
    23581 cacagtatcg caatgccgac taagatcaag gctgaaccaa gtttaatcat ttgtctgttg
    23641 ctaaatttaa gcgtcaagaa gccacttacg cctctgccaa cggtaatgcc gataaagaaa
    23701 atactgccga acgcagccgc ttgttctaag ccgacatctt taaccattac aaaatagcta
    23761 ctcgcccaca gtccggcggt ttgttctacg ccacaatagc caaaaaaagc taaaatgcca
    23821 tatttcacgc ccggaatttt tagcgtttct tttaagctca tcggttttgc cgaatggttg
    23881 atttcagcgg taatctgctt gcgtaatttc caaaaaggca gtgagcaaaa cagcattagc
    23941 gttagcccga tttgtaacat tgaaatggtg aaatagcctg cctcccagcc tcgcccttgc
    24001 aataaggcgt agcctaaaat gtgcggcccg atagaagctc caacgcccca catacaatgc
    24061 agccagctca tatggcggct tgcgtagtga actgctacat agttattcaa cgccgcatca
    24121 accgctccag cccctaagcc gtaaggaatt gcccataaac ataagatcca gaaagcatca
    24181 ctgattgaaa agccccacaa tgctaaagcc gttaaggcaa cgctgatgac cattactttg
    24241 cctgtgccga gatggtaggt cagtttgtcc gacattaagc tagaggtaat agtgccaatc
    24301 gacataatca tcgagaccac accggcatag gaaagcggaa cagcaagctg ttggtgcatt
    24361 gacggccacg ccgagcctaa aattgcatca ggcaacccaa ggctgataaa agagagataa
    24421 ataatagcga gtaggaggtt agtcatagct tacaatcggt cacaaaaagc atcgcttttt
    24481 gaacgttggc tctgccaacg ggagcgaagc tgtgaacaat ccttacaagg attgtgaata
    24541 atttttgata aattttttgt aaaaaaatgg cttaaggaga ccttaagcca aattttatta
    24601 tttcacttct gccaaatagg ccttattagc acggtcaaag gtgtctaata cggctttgct
    24661 tggcattggc gtgataagtg ataccacaat gatcattagg gtagcagcaa taaagcccgg
    24721 gatcatcgag taaatttccg gtaaggcgag cttaagtgta atatcgcccc aaaaatgcac
    24781 gattaacgca ccggtcagca ttccggcaat cgccccaaaa ccgttcatac gtttccagaa
    24841 tagtgaaagc aataccacag gcccaaatgc cgagccgaaa cctgcccacg cattacgcac
    24901 taagccaaat actttgctgt ccgggtcttg ggcaatataa atagctaatg ctgccaccgc
    24961 aagcaccatc aagcggctta accaaaccag ttctttatcg gaggcttgag ggcgtaaaat
    25021 gcctttgtat aaatcttcgg taatcgcact tgaacaaatc agtaattgag cggaaagggt
    25081 actcattacc gcagcaagaa tggcagataa taaaatgccg gctacccaag ggttaaataa
    25141 caatttagct aattcaatga aaatttgttc cggatttttg ctgatattgc cgacttgctc
    25201 cgggttgcca aagaaatatg ccataccaaa ataaccaatg cctattgccc ccagtaagca
    25261 gataatcatc caagtcatac tgatacggcg tgcattttca agagacttca cactttctgc
    25321 cgccataaaa cgcaccacaa tatgcggttg tccgaaataa cccagccccc acgccattaa
    25381 gctgataatg cctaatacgc tggtgccggt gaaaatgtcg ttgtagtctt tttgtgccat
    25441 ctcgcctgca cggtcgatta aggcttgcat ttcatcaaaa ccacctaagt tatacatcac
    25501 aaaaaacggg gtgagaatca gggcaaaaac cattaatgaa gcttgaatag tatccgtcca
    25561 acttactgct aagaaaccac caataaaggt gtaaagaatg gtagcaacag ccccatacca
    25621 aattgcttgg tggtaaggta agccaaataa gttttcaaat accctcgcac cggccacaac
    25681 gcctgatgca cagtaaattg caaaaaagag taaaaaaatg accgctgata aaatcttaat
    25741 taaacgggtt ttatcgccaa aacggttatg aaaatattcg ggtaaggtta aggcatcgcc
    25801 actgtgttct gtatgcgagc gtaatctgcc tgcgactaat ttccagttta gataagcacc
    25861 gatagttaaa ccgattgcga tccagccttc gatcaaaccg cctgcataaa cggctccggg
    25921 taatcccatc agcaaccagc cggacatatc tgatgcaccg gcagaaagtg cggtcacaaa
    25981 gctacctaaa cggcgaccgc ctaaaatata gtctgaaagg ttattggtaa cacgataggc
    26041 aataaagccg atggcaatca ttcctagaat atagacaaca aacataattg ttgttggatc
    26101 aagaccaaac attattaatg aatcctcaag atttcttatt gtataaagat taaagtgagt
    26161 aaagggtaaa agattacctg aaataatcaa aatggcaaca caaaattacc gtccgcccag
    26221 ctcagctgaa attttttctg ctgtttcttg aatagccggt agtagatttt cccgccccag
    26281 ctgatttaaa cgagcagttg aaagcgaaac agaaatcgca taatggactt tttgttggtg
    26341 atcaaaaatc gggcaagcaa tacaagaaac ccctaattca ttttcttcgt tatccattgc
    26401 aaaaccttga cggcgaatgg tttccagctc ggtttgcatt ccgtcaatcg tggtgatggt
    26461 attgaccgtc agtttttgaa tgatgtccga tttagtctgc caatattgtg gaatgtaatc
    26521 tgccgaacca taagcaagaa acagttttcc cattcccgag caatagagtt gcatttgttg
    26581 cccgatatag gctcgggtac gcatcattcc ggtggtagct tctaatttat tgattaaaat
    26641 agcgtgatcg ttttcccgca tcgcaaaatt taccgtctcg cctaaggtta aatttagggc
    26701 ttctaaatgt ggggcggcaa tatgcaaaat gttaatcgaa cttaaggctc gctgcccgat
    26761 tgccaaacat ttggtggtta aacgataact gcccgcagtc ggtgcagggc ggacgtagcc
    26821 ctcttgttgt aagccttgta gcagacggtg aaccgtgctt ttgttcagcc ccgaaagctc
    26881 ggctaaatgg gcaagcggac agccgtttgg gaatttcgct aacaattcca atagtgttaa
    26941 gccacgaatt aaactttgat ttccactcga ttccttttct ttctttgcat tcatttggct
    27001 gctcccaaaa taatatgatc taacggcata tcccaactct caatcggtaa ttgttcgact
    27061 tgctgacatt cgtgtgccaa accgacacta atcagatgag gtgcttgagc aagggttcta
    27121 tcataaaagc cacctcccat tcccagccga tttccggctt tatcacaagc aacaagtggg
    27181 gtaaaaatca tctctaattc ttgcaacgga aggatatttc taacatctaa tatcggctct
    27241 tgaatcccca agcggttaaa ttttagaata gttttgcaat tgtaatttac aaacaataat
    27301 tgaccgcttg taaaagggtg caacagcggc agatacagct ttttgccctg ttgaagtaat
    27361 tgttccatta aaggaatagg agaaatttca ccgttaaaag gcaaataaaa ggcaatatgt
    27421 gaggcttggt aagattcaat caatgaaaga gcttgaggaa taatggattc ggctgcttga
    27481 gtttgctgac cggcagttaa actttgccgt ttaagccgca ttgattgccg taattggcta
    27541 cgaagatcgg ttaaagatga ttgattcata taaagacccg agatgccgct accagtaatg
    27601 gtccttgaac cagtcggttc aagggagtca aacttaactg cttttaggct tcttactcct
    27661 aattaaatta gggtaagctt gctcaccagc gttagatgtc caactcaaag tttcaaatta
    27721 tcggctcagg gacgtaactc gtaacgcaca ccccaggcaa gacttatagt aacggaattt
    27781 gatgattttt cctagtattt aatcccacaa aatgcaaatt ctcaatcttt ttggctctat
    27841 tcctaatcaa ttcgattaaa aattacctaa ttggattgaa atttgccaag cgaattatct
    27901 aactgctcaa tacaagccac caacacattt ttattttctg cattttggcg ttgggcttgc
    27961 tccagttcat aatttaaatt cagtgccaca atcgctaaca ctttttcaag ctgaataatg
    28021 ccggactgct ctttcaatac caccacacgc tcttccaaac gctgtgctga agccagtaaa
    28081 tgctcttgct gttcaacagg gcattgcaag cgtaaaacct gcccaaaaat ctgtagttcg
    28141 atattatttg ccgacataaa tacgaaatcc tcacttaatc gcaaaatttt tgctatatta
    28201 tgccattctt tagcaaaatc acaaataatc ccattatggc tatcacagat tcccaacaat
    28261 ttaaacaact ggtatcacaa ttacaaattg atgatacacc ggcagagttt cacggttttt
    28321 tatgcggttt aattgccggc ggtattcaag atgagtcttg gaaaaccctc acctaccaat
    28381 ttaccaatga cggacacgca ttttccatcg agccgttaaa cactttaacc gatttttatc
    28441 agcaattaag tgaaagcttt tcagaagcca acacgctgtt tagcctttgg ttgccacaaa
    28501 acgaagaaga tggttttgcc ttagctgatg gtatctccga atggacaaac agtttcttac
    28561 ttggacttgg cgttgctcaa cctaaattac aacaagaaac cgatgaggtt ggcgaggcaa
    28621 tcgatgattt agatgaaatc gccaaactag gctacagtga cgatgataat aacgaggaac
    28681 tactggaggc tggcgaagaa gtgttggaat atctgcgagt tttagcctta ttcttgcaca
    28741 gccattttgc tttaggcgtg ccgaaaaccg aagaaaagcc accattacac taatgaataa
    28801 atacaagcgg ttcaatttca tctctatttt gcaaatatat tatgcggggc gaaaaatatt
    28861 tcgcccctac caaaatcaaa ggaaaaacca atgtcagaat taaaaaacga tcgctattta
    28921 aaagcgttat tgcgtgaacc tgtggatatg accccggtct ggatgatgcg tcaagccggg
    28981 cgttatttgc cggaatataa agccacccga gcagaagccg gcgattttat gtcactctgc
    29041 cgtaacgctg atttagcgtg tgaagtcacc ttacaaccgc tacgccgtta tgaactcgat
    29101 gcagctatcc tattttccga tattttaact gtgcctgatg caatgggatt aggtttaagt
    29161 tttggtgcag gtgaaggccc taaatttgcc cgcccggtgg caagcctcaa tgatgtcaat
    29221 cagctaccga ttcctgatcc ggaagacgag ttgcaatatg taatgaatgc ggtgcgtacc
    29281 attcgccgag aattgaaagg cgaagtgcca ctaattggtt tttctggcag cccttggaca
    29341 ctcgccacct atatggtgga aggtggttca agcaaagcat ttaccaaaat caaaaaaatg
    29401 ctttacgctg agcctcacat tctacacaaa ttgctggaca agttagctga cagtgtcatc
    29461 ttatacttaa atgcccaaat caaagccggt gctcaagcgg tgatggtatt cgacacttgg
    29521 ggcggtgtat tggctcacga ggattacaaa gccttctcat tacactatat gcacaaaatt
    29581 gtggacggct taattcgaga aaatgaagga cgtaaagtgc ctgttaccct attcaccaaa
    29641 ggcggaggct tatggttaga agcgattgca gaaacgggct gcgatgccgt tgggctagat
    29701 tggacagtcg atattgccga tgctcgccgc cgtattggcg acaaagttgc gttgcaaggc
    29761 aatatggatc caagcgtgct gtatgcaagc cctgaacgaa tcgaacaaga agtaaaaaac
    29821 attcttgccg gcttcggcaa cggcagcgga cacgtcttta atcttggaca cggcattcat
    29881 ttagatgtgc cggtggaaag cccgaaagtg tttgttgatg cgattcacaa ctactcgaag
    29941 cagtatcata aataatggat aaaatgccct ctctccttgt gggagaggga cagatttttc
    30001 tttgttcaga agaaaaatca gggagagggg caagcggtca tttttataca gaattttgca
    30061 aaatcgttcc cttctctctg aaaaataaag aaggaaatac aatgagaaac ccgattcata
    30121 aacgcatgga acgtttcgag ccttggcaaa acaccacatt tatggcgtgc ctatgcgaaa
    30181 gaatgtaccc caactatcag cttttttgtg aagtaaccga acagcctgaa aaagctaagg
    30241 tattccaaaa tattttaaat ttagtctggg aatatttaac cataaaaggg gcaaaaatta
    30301 atttcgataa ccaactggaa aaattagaag aaatcattcc tgatgtgaac gaatatgcgt
    30361 tttttggtgt cttacctgca caggaagctt gcgaagccct ttctgaactt cttcacagta
    30421 ttatcgctgg ttcaaccctt gaacaagcaa tccgcatcag ccaaatttca ttaggcacag
    30481 ttgccagcta tttggaaatg caacaagata aagaactgaa cgagcaagag ctaaagaatt
    30541 ctgaagaaat tcaagaagaa ctggacgtac agtggcaaat ataccgcttg ctaaacgaat
    30601 gtgaaaaacg tgatcttgat ctcatttttg aacttaaaga tgaaatcaga agcagcggga
    30661 ttagtaatat cgggttaaat attaaccaat agcattgata tttgcaaaat cttgcttaat
    30721 aatactttga gaaatcttaa ctttgaatta agctatcgca aggtttcaat aacttctcag
    30781 acgttttacg tcatttatta aaaacacata tcttagagga taaaactatg aacaaaactg
    30841 agttaatcga tgctatcgcc gctggtgcaa acttaaccaa gaaagatgct aaagcagcat
    30901 tagaagcaac tcttgatgca atctctgcaa gcttaaaagc aggcgacgct gttcaattaa
    30961 tcggcttcgg tacttttaaa gtaaatgagc gtaaagcacg tactggtcgt aacccaaaaa
    31021 ctggtgaaga gatcaaaatt gcagcagcta aagtacctgc attcgtttca ggtaaagcat
    31081 taaaagattt agtaaaataa ttctttaaag atat
//
LOCUS       DANLRW010000018        30749 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.018, whole genome shotgun sequence.
ACCESSION   DANLRW010000018 DANLRW010000000
VERSION     DANLRW010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 30749)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30749)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30749
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.018"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            53..559
                     /locus_tag="PXA71_000653"
     CDS             53..559
                     /locus_tag="PXA71_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDL5104791.1"
                     /translation="MAMSNIGLDKEIAKKLADELNGLLATYQVFYTNVRGYHWNVRGV
                     NFFELHAKFEEIYDDLVTKVDEIAERILTLGHTPQNAFSQYLTKSQIQEHIGVSAAQE
                     CLRGTLNGFKTLLGQQREILALANDANDEGTASQMSDYIKEQEKLVWMFTAACAECSD
                     YAQGCSCN"
     gene            618..1331
                     /locus_tag="PXA71_000654"
     CDS             618..1331
                     /locus_tag="PXA71_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HDL5104792.1"
                     /translation="MAMSQGFQFKQFFIRHDRCAMKVNTDGILLGAIAHIKDCQNILD
                     LGIGSGLVALMLAQRTDDCCHITALELEPNAYQQAVENAQNSAWANRISVLQGDVMQQ
                     AFEQKFDLIVSNPPYFADSLAARTTERDLARSISHYSHLNWLAKAKPWLAENGKITLI
                     LPIAAAEKLVDQSEQIGLYCVEQWLIFTKSGKLAKRSIVSFSLNKQKREHKELIIYDL
                     DNCYTTEFKRLTQDFYLNF"
     gene            complement(1442..2446)
                     /locus_tag="PXA71_000655"
     CDS             complement(1442..2446)
                     /locus_tag="PXA71_000655"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005651072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDL5104793.1"
                     /translation="MAFNLKNRHLLSLVNHTEREIRFLLDLARDLKRAKYAGTEQQKL
                     KGKNIALIFEKTSTRTRCAFEVAAYDQGAHVTYIDPNSSQIGHKESMKDTARVLGRMY
                     DAIQYRGFKQSVVQELADYAGVPVFNGLTDEFHPTQMLADVLTMIENCEKPLSQISYV
                     YIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEDAFVKMCEKFAAESGARMTVTED
                     IETAIKGVDFVHTDVWVSMGEPLESWTERIDLLMPYRVTPELMQATDNPKVKFMHCLP
                     AFHNSETKVGKEIAEKYPALANGIEVTEEVFESPMNVAFEQAENRMHTIKAVMVASLA
                     "
     gene            complement(2534..3373)
                     /locus_tag="PXA71_000656"
     CDS             complement(2534..3373)
                     /locus_tag="PXA71_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HDL5104794.1"
                     /translation="MQSYPYLLVNVFATSHFGGNPLAVFYEADGLTDLQMQLIARQFN
                     LSEVVFIQSSTDSQAVKKLKIFTPDYEMPFAGHPTVGAAFVLHSAFDFPTTYRLQTNA
                     GLVAIQHQHNVTTFALTNGVNLENTPLSRAECASILGLNVADIASEPCYVNTGVEQLL
                     VELASQQAVEKCKINANLAEKAFLKDSVYVWCREGNEAKVRLFFQSQGSIVEDPGTGS
                     AAANLGGWHIAQGKIPIQLQISQGDEIQRPNRLLLKVDQNGKIFVGGEVILVGKGEFY
                     LPE"
     gene            3563..4897
                     /locus_tag="PXA71_000657"
     CDS             3563..4897
                     /locus_tag="PXA71_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5104795.1"
                     /translation="MLYAEFLLLLAFLYAGSRYGGIGLGVVSGIGLFVEVFFLGMPLS
                     APPISVMLVILAVVTCASILEAAGGLKFMLQVAERILRSNPKRITFLGPLVTYLMTLM
                     LGTGHSVYSIMPIIGDIALKNKIRPERPMAAASVASQLGITGSPLSAAVAYYLTEIVK
                     LPGFEGVTLLNVVGVTITATFCGVIAMSLYSLRRGKELEDDPEYQRRMQDPELRKQIE
                     QTSATSLDEKLPASAKNSVYLFLAAIATIVIIAMIPAIKPTVAATGKVAGMDQIIQIV
                     MLTFGGLILILTKTDPKKVPNGIVFKSGMVATIAIFGIAWMSDTYFTHAMPAFKEGVT
                     EMVRAQPWTFAFALFAVSVVVNSQAVTAKMLLPVGIAMGLPAPLLVGLMPATYAYFFI
                     PNYPSDIATVNFDVTGTTKIGKYYFNHSFMAPGLVGVITACIVGIAVANVLI"
     gene            complement(4977..5387)
                     /locus_tag="PXA71_000658"
     CDS             complement(4977..5387)
                     /locus_tag="PXA71_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL5104796.1"
                     /translation="MNSTLTNLQPLAFLITRVVAGYMFLLHGTAKFFEFPMSMTNGNG
                     SVPLASIYGVGGILEIVGGIFFILGLFTRQTAFILSGMMAYAFFIAHGAQGNVLLPLL
                     NGGELAGVYSVLFLTYIFIGGGKYSLDAKLFNKA"
     gene            complement(5510..6187)
                     /locus_tag="PXA71_000659"
     CDS             complement(5510..6187)
                     /locus_tag="PXA71_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL5104797.1"
                     /translation="MNLFGFRCFHCNHPLAIGVQGICSHCQKLLKPTPYCRHCGMSAV
                     EFRNACGYCLKNEPKWHKLVRVNEYRAPLSHWVHQFKFQQQYWWDQALARQLLLAIKQ
                     AQREQVLSLPEVIMPVPLFWHRHWKRGFNQSELLCDWLSKWLQIPLDTQSLQRVRATV
                     SQRELTAAERRKNLRGAFFYQPLKAYKRVAIVDDVLTTGSTLNVICAELLKAGVVEIQ
                     VWVLARA"
     gene            6305..7117
                     /locus_tag="PXA71_000660"
     CDS             6305..7117
                     /locus_tag="PXA71_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL5104798.1"
                     /translation="MKSLQKPIKIVFFDIDDTLYVKHKAYIPKSITEQVLPRLKAKGI
                     IPAIATGRNHGCFPEALKPYLNPEIGFELFVTINGQYNFYKDQIISDYSLSREQIERI
                     IEKANALGILYAFITPMTIAVSETNPIVHEAVLPITPNYLIDPHYYEKEKIVQMLLFY
                     TEEQKQAVENSGIFANDLKEARWHPNAVDILRKENSKARGIQDVLATLNIEIESAMAF
                     GDGINDLEMLPTVGVGVAMGNGVPELKAVADFITKPLEEDGILYALETLEVI"
     gene            complement(7165..7434)
                     /locus_tag="PXA71_000661"
     CDS             complement(7165..7434)
                     /locus_tag="PXA71_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5104799.1"
                     /translation="MGLLYLLLLNTLIGYGSYGEALNHWDTSKVSIVTTMLPIFTMIF
                     SNLSYYFYPHIFAKPDMNWISYLGALVVVSGAILAIAGDKLFRRN"
     gene            complement(7407..8084)
                     /locus_tag="PXA71_000662"
     CDS             complement(7407..8084)
                     /locus_tag="PXA71_000662"
                     /inference="COORDINATES: protein motif:HMM:NF013088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5104800.1"
                     /translation="MKQRPLLGFSLALTAAMTWGTLPIAAQQVLKVIDAQTLVWVRFV
                     VASVGLLLILGFAKRLPKLTACSKKELGLILLGVCGLSANFFLFAEALHYVSPTINQV
                     LWQLAPFSMILLGVLLFKEKFGLFQKIGFVLLIAGLVAFFNDKFAEILQLNTYALGVL
                     LSAGASLIWVLYGVAQKLLLAKFNSQQVLFIIYIGCSLLMLPFASPAQLGNLEDGFLW
                     GCFIYCC"
     gene            complement(8186..8443)
                     /gene="rpmA"
                     /locus_tag="PXA71_000663"
     CDS             complement(8186..8443)
                     /gene="rpmA"
                     /locus_tag="PXA71_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDL5104801.1"
                     /translation="MATKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGSNVGMGKDHTLFATADGKVKFEVKGEKSRKYVSIIAD"
     gene            complement(8464..8775)
                     /gene="rplU"
                     /locus_tag="PXA71_000664"
     CDS             complement(8464..8775)
                     /gene="rplU"
                     /locus_tag="PXA71_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDL5104802.1"
                     /translation="MYAVFQSGGKQHRVSEGQVVRLEKLELATGEKVEFDSVLMVVNG
                     EDVKIGAPVVAGAKVVAEVVAQGRGEKVKIVKFRRRKHSRKQQGHRQWFTEVKITGIQ
                     A"
     gene            9053..10051
                     /gene="ispB"
                     /locus_tag="PXA71_000665"
     CDS             9053..10051
                     /gene="ispB"
                     /locus_tag="PXA71_000665"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HDL5104803.1"
                     /translation="MAVQLFSLEQIQALANEDMQAVNAEILAQLNSEVLLINQLGHYI
                     IAGGGKRIRPLIAVLAARALGYRGKKHITAAAFIEFVHTATLLHDDVVDESDMRRGRP
                     TANAHFGNAASVLVGDFIYTRSFQMMTDLDSLRVLKVMSAATNALAEGEVQQLMNVND
                     PNTTEANYMRVIYNKTARLFEAATQCVAIAADASEEIETALKNYGCYLGTAFQLIDDI
                     LDYSAQSESLGKNVGDDFVEGKPTLPLLHAMHAADKAGKTTQAELIRNAIENGGELEQ
                     IPQVLAIMQEHQSLDYAMQKAREEAQKAVDSLGVLPESEYKQALVSLAYLSVDRSY"
     gene            10154..10900
                     /locus_tag="PXA71_000666"
     CDS             10154..10900
                     /locus_tag="PXA71_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDL5104804.1"
                     /translation="MTEQNQRPQEHIESVRARRRAQNQKKGPNAPFVREKLTLPNGHN
                     KLLLHSCCAPCSGEVMEAIHASGIEFTIYFYNPNIHPLKEYLIRKEENIRFAEKWGIP
                     FIDLDDDYENDRKEWFKKAKGMEWEPERGIRCTMCFDMRFEKAAEYAHNNGFPVFTSC
                     LGISRWKDMNQINDCGHRAAAKFDDVVYWDYNWRKGGGSQRMIEISKRERFYQQEYCG
                     CVYSLRDSNKWRLETGRQRIEIGKLYYSPD"
     gene            11317..12252
                     /gene="fabD"
                     /locus_tag="PXA71_000667"
     CDS             11317..12252
                     /gene="fabD"
                     /locus_tag="PXA71_000667"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDL5104805.1"
                     /translation="MSKFAMVFPGQGSQAVGMLADLAPQYPIVEETFKQASDVLGYDL
                     WDLVQNGTAEELGQTHRTQPALLASSVALFRIWQQKFPEQKPAVMAGHSLGEYSALVC
                     AGVLDFQDAIKLVELRGRAMQEAVPAGSGAMFAIIGLDNESIIKACEQAASETGEIVS
                     AVNFNSPGQVVIAGTKAAAEKAGELCKAAGAKRALPLAVSVPSHCALMKPAAEKLAEA
                     LQNIELNQPLVPVINNVDVAVETDADTIRNALVRQLYSPVRWTETVEKMAQDGITTLY
                     EIGPNKVLTGLAGRIVKELSAKAVNDVASFEAVEA"
     gene            12269..12733
                     /locus_tag="PXA71_000668"
     CDS             12269..12733
                     /locus_tag="PXA71_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104806.1"
                     /translation="MSKETLFMLISALIALVILPLAYTVGIAKETLGGNMGMLSIAAG
                     CSFLAYFLSLNPKIRHAFIGGSAITAAAIQAWVLYGVLLSENDPKSAVVLFQIYLFSS
                     LGPLFFSAIWAFTRPRWIYPKQGSAVKYALFGGLTTVINYLITLFIFYILTL"
     gene            12754..13476
                     /gene="fabG"
                     /locus_tag="PXA71_000669"
     CDS             12754..13476
                     /gene="fabG"
                     /locus_tag="PXA71_000669"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HDL5104807.1"
                     /translation="MSKIALVTGATRGIGKAIAEELVAKGYIVVGTATSEKGAESISA
                     YLGENGKGLVLNVADAESIESVLKQIKETFGDVDVLVNNAGITRDGLLMRMKDEDWFD
                     IIQTNLTSVYRLSKAVLRPMMKKGGRIITIGSVVGSMGNPGQTNYCAAKAGLVGFSKS
                     LAKEVASRGITVNVVAPGFIATDMTDELTEDQKNAILSQIPAGELGSPQDIAKAVAFL
                     ASDDARYINGETIHVNGGLYMS"
     gene            13595..14893
                     /gene="brnQ"
                     /locus_tag="PXA71_000670"
     CDS             13595..14893
                     /gene="brnQ"
                     /locus_tag="PXA71_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDL5104808.1"
                     /translation="MTRNTLVVGFLLFAIFFGAGNLIFPPKLGYESSTEFFSAISGFV
                     LTGVGLPLLGIIVSAFYNGGYKSALDKIHPWFSLAFLTSIYLAIGPFFAGPRTAATAY
                     EMAIMPFLGDSSQVSMLIFTLIYFAFTLWLALNPNKMVDRIGAILTPILLITIIGLVI
                     RAGFILDTDPQITTPNTNEQSYFFKGMVDGYLTMDALASLAYSVIVLNAIRGKGVSQA
                     ALQRQTVSAGLVAAVALAVIYISLGWIGNNMPISANTLSMLSERKLDLGTYILNTVTT
                     QAFGELGRSVLGVIVSLACLTTAVGLAVSVSEYFNEIFPKISYKVYAILFTVISFTVA
                     NQGLKEVISKSIPVLLVLYPIAMTVILMLLINLVIKLPLSAQRLSLLLVTIVAIASVA
                     GVGFTENLPLKSYSMEWLPFAIIGAIIGAIIHPLTGRKHK"
     gene            14939..15763
                     /gene="mutM"
                     /locus_tag="PXA71_000671"
     CDS             14939..15763
                     /gene="mutM"
                     /locus_tag="PXA71_000671"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HDL5104809.1"
                     /translation="MPELPEVETSVRGVSPYLVGQTIEQIIVRQPKLRWTVSPELSQM
                     AGAKITAVERRAKYLIIRTDKGDILVHLGMSGSLGILQERQQKEIGKHDHVDLITQNG
                     TILRYNDPRKFGCWLWAEKAEDHELLRKLGPEPLSNDFTADYLFAKSRKKTTACKTFI
                     MTNEVVVGVGNIYACESLFMAGIHPELAAQNLTKKQCERLVKTIKEVLTKAIIQGGTT
                     LKDFIQPDGKPGYFAQVLQVYGRKGETCNDCGKPIETKVIGQRNTYFCPKCQRLPK"
     gene            complement(15846..16280)
                     /gene="dtd"
                     /locus_tag="PXA71_000672"
     CDS             complement(15846..16280)
                     /gene="dtd"
                     /locus_tag="PXA71_000672"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HDL5104810.1"
                     /translation="MIGLIQRVKFAKVEVEGQVVGEIASGLLVLLGVEKDDDEAKADK
                     LLEKVLNYRVFSDSEGKMNLNVQQAGGSLLVVSQFTLAADTNKGLRPSFSKGASPVDA
                     ERLYAYFHQQAATKIHTQTGQFAADMQVSLQNDGPVTFWLQV"
     gene            complement(16255..17100)
                     /locus_tag="PXA71_000673"
     CDS             complement(16255..17100)
                     /locus_tag="PXA71_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HDL5104811.1"
                     /translation="MLNRLWRFIKLFAKRYNENNIAISAGYLTYSTMLAIVPFIVVLF
                     SIFTFFPIFHEANEQLKAFIYDNFAPSASEMVSEYIELFVSNAKQMGLVSFIGLFVVT
                     IMLIKSIDEALNTIWHDNRQRPMWFSFLLYFLILLFGPLLAGASIAISTYVMSLSIFN
                     GNGALSLGQHLLELMPFLLIWLLFTLVYKFIPIRKVKFQHAAIGALMAAIFFTLGKKA
                     FIWYITAFPSYQAIYGALAVLPIMLLWIQLSWQVVLLGGQFAAVLDEMETDKGSINDR
                     LNSAG"
     gene            complement(17102..18340)
                     /gene="proA"
                     /locus_tag="PXA71_000674"
     CDS             complement(17102..18340)
                     /gene="proA"
                     /locus_tag="PXA71_000674"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HDL5104812.1"
                     /translation="MQMIELAQQAKQASFELAQFGNLQKNQALLTIADSLEQRAEEIL
                     YANAKDIEFAQAQGISLAIIDRLLLNEDRLKDIANDVRNVAKLADPVGQVMDGGVLDS
                     GLKIERQRVPLGVILTIYEARPNVTIDVASLCLKTGNAVILRGGKETKFTNAVLVDVV
                     QDALEKAGLPKLAVQAVTDPDRALLLELLKLDRYIDMVIPRGGAGLHQFCKENSTIPV
                     IVGGIGVCHLFVEKTADQEKSLEVIANAKTQRPSTCNTLETLLVEKAIAVEFLPKLVA
                     KMQQLGVTIHSNDLQKIEGIEPLDQAKLSQEWLSLDLNVVVVNDLQQAVEHIRHYGSQ
                     HSEGILTSDYQLARQFVQQVDAAAVYINASTRFTDGGEFGLGAEVAVSTQKLHARGPM
                     GLEALTTYKWVCEGDYLVRG"
     gene            18624..20507
                     /gene="mutL"
                     /locus_tag="PXA71_000675"
     CDS             18624..20507
                     /gene="mutL"
                     /locus_tag="PXA71_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HDL5104813.1"
                     /translation="MINTTPKQLIHILPPQLANQIAAGEVVERPASVVKELVENSLDA
                     GANTIQIDIEKGGSQLIRIRDNGCGISKQDLPLALARHATSKISSLEDLEAILSLGFR
                     GEALASISSVSRLTLTSRTAEQTEAWQAYAQGREMAVEIQPASHPIGTTIEVANLFFN
                     TPARRKFLRTDKTEFAHIDEVVRRIALAKPNISFSLSHNGKIVRQYRKVQDNSVEQQQ
                     KRVAAICGDEFIQHSTYIDRQHGDLHLHGWVGSPALARLQNDLCYSYVNGRMMRDKTI
                     NHAIRQAYGDSIASGYYPAFVIFLDLDPTMVDVNVHPAKHEVRFHQGRLVHDFILQGV
                     LNSLQQTQPTLELRNEVNEPLPSYVQDTNRQAAGQNIFVSQTAPQAAEFTQKNASRSS
                     YTPKFERSNSVSSSAQKWYKELVGGDLHQTTPTIKTQSTLVEPKTEPQTEHKTEAVSQ
                     KITQIAPLASHHSQALAIVKNQAVLIKEEENFYLLPLATLAELKLKLQLEKGQSQALL
                     IPLNLSLDQQQTERWQQTKEELTKLGFSISEKQWQAQTRLTVLSVPQAVREQNLQQLL
                     FALFNQTQAVNLAEFFAKKCEKPTACTLSDVIALLSEIELYANGKKELEGIRKEVDFS
                     KFL"
     gene            complement(20526..20795)
                     /locus_tag="PXA71_000676"
     CDS             complement(20526..20795)
                     /locus_tag="PXA71_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL5104814.1"
                     /translation="MREIEYSNAFKRDYKKCAVESLSSSLIEALYFLINDKPLPEKYC
                     DHALTGEWKGFRDCHIQPDLVLIYRKVEDDKLELLRIGSHSHLFG"
     gene            complement(20782..21048)
                     /locus_tag="PXA71_000677"
     CDS             complement(20782..21048)
                     /locus_tag="PXA71_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL5104815.1"
                     /translation="MANSALVSVRISPEIKEQASEVLAGIGLTVSDVMRMTLAKIATE
                     KRFQFDYQPNFETAEVLRAVKNGEEKLHSANSIADLMEQLNARD"
     gene            21488..22441
                     /gene="miaA"
                     /locus_tag="PXA71_000678"
     CDS             21488..22441
                     /gene="miaA"
                     /locus_tag="PXA71_000678"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDL5104816.1"
                     /translation="MNKKPLALFLMGPTASGKTDLAIALRQELPVEVISVDSALIYKG
                     MDIGTAKPSKEELALAPHRLIDILDPAESYSAMNFHADALREMADITSQGKIPLLVGG
                     TMLYYKALLEGLSPLPSADPAIRAEIESRAAQHGWATLHQELVKIDPIAGARINPNDS
                     QRINRALEVFYITGKTMTELTAQQGEALPYNILQFAIAPQDRAVLHQRIEQRFHKMIE
                     LGFEEEVKRLFLRKDLHINLPSIRCVGYRQMWEYLQGDISLDEAIFKGICATRQLAKR
                     QITWLRGWQGELTWLDSLAPTSSKAKMVEKIDHYLKNCDNI"
     gene            22510..22782
                     /gene="hfq"
                     /locus_tag="PXA71_000679"
     CDS             22510..22782
                     /gene="hfq"
                     /locus_tag="PXA71_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HDL5104817.1"
                     /translation="MAKGQSLQDPYLNALRRERIPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPARALSHNNNNQAQHAQPAAEVTEQAE"
     gene            22802..24187
                     /gene="hflX"
                     /locus_tag="PXA71_000680"
     CDS             22802..24187
                     /gene="hflX"
                     /locus_tag="PXA71_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HDL5104818.1"
                     /translation="MLNESLPNSEENSAFGFALSEASQTTEAASPTDPENQDKAILVH
                     LYLGQHKDVENLLEFKTLAESAGVEVLATLTTSRQSSHIKYYVGQGKAEGIAEAVERL
                     GATVVLVNHQLSPAQTRNLQSLCGCRVVDRTGLILDIFAQRARSHEGKLQVELAQLRH
                     LSTRLVRRVTNQDQQKGGAVGLRGPGETQLETDRRLIKVRIQQLLNRLEKVSKQRNQN
                     RKTRQKADIPTVSLVGYTNAGKSTLFNAITQAGVYAADQLFATLDPTLRRIQVQDVGT
                     TILADTVGFIRFLPHDLVSAFKSTLQETTEATLLLHVIDGSDERKNENIDAVNQVLDE
                     IGALDIPTLLVFNKIDKLEGVEPHIERNADGTPVAVYLSAQENSGIELLFQAIQERLR
                     SNLVCENLLLPVTAGAIYAQFKAENCIKTEHFNEFGERIISIEINEVQWNKWVKQFPD
                     LAEYIELAKWG"
     gene            complement(24409..30480)
                     /locus_tag="PXA71_000681"
     CDS             complement(24409..30480)
                     /locus_tag="PXA71_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5104819.1"
                     /translation="MNKIFKVIFNQTTQKMEVVSELARSQGKAASSTDKRGTIKLAAA
                     SILGGATLISGMAAFMLSATPAEAAVIIDRIEVQQKAPKKVVNGGIDIYTNTSLATDS
                     ITNPYNYFNPGSLSYADRTKLQESNNSVNKEKDSRLLYKSNTTSAIVIGHNAVALDNN
                     RKSRGKPKASGIAIGDYSYSGGGLSIAIGSFSRTASIGSVALGTSARAEGFNSFAAMR
                     QSAAIADYSTAIGSTSWANATASFAIGASATALGDRSFAIGSGTPQTVDGSYGHENRR
                     SIYDGQNNTLAFGTDAFSIGTKAKTNGNHSFAIGTNAWSGGFKLENSNISELGQVINP
                     DTAKVANNAFALGTNTRANSNDTLAFSTNASATGDGSIAFGVNSNTTGIGAIAFGNAS
                     KAWKSNAISIGWNANSHAEKVISIGSHSNASKDGAMAIGDTANSSGNNSVAIGYSANV
                     SKANATAVGTRANITHEGGTAIGFEAKSKGNYATAIAYNSTAKGKNSIAAGVNSTVSG
                     IRAAALGYNNTVSGKDTFVLGSNVTVKTKGSVILGSDSTEATATKEDTATVGTLKYSS
                     FAGDENVVDGDYVSVGNATNARQIKFVAPGKIASNSTDAINGSQLYAVADTLVKTGFN
                     ITADHSGLGGGAKEDNVKLGETVKYTSTDKNVVTTVTNNTIDFGLSDNISVGGKPGKD
                     GSVGVKGADGKDGVTIKPEAIVFHGVDGVNGKDGKDGKASIKVEKGAKGLDGNDGKDG
                     ESKTRIVYEKPNGDKEEVATLNDGLKFGANDGKVHDAKLNTQVDIKGATTNTDWAKFD
                     AGKNIMTQVVGNTITVALAKDLAGLDSATFGTQGDSTVINKDGVTIAKKDPNDATKSN
                     VTLTEDGLSNGGNQITNVDSGLKGKDGQPVKLTEAAGDVLNNAVNVGDLKNTVTETVT
                     EVTTDAFGLKDENNKEFKQNLGTTAKIIGDGNVKTNVVEKDGGHALEVSLVNNITVGK
                     DGEPGKVGIAGKDGKDAIALDGKDGAITVGRPGKDGIDGTIGVNGKDGSAVVLNGKDG
                     SIGLNGTNGKDGLTIKGTEGKPGLVGKDGLPGKDGVTRIQYQPTDGNGDPIGEPEQVA
                     TLNDGLHFKGDDATLVSKKLNETLEIIGGADKDKLTANNIGVNSKDGKLSVQLAKDLK
                     DLNSATFKPQDGENGQEGKGPTTVVNNNGVTITPKDGTDGKAVKLTEDGLDNGGNQIV
                     NVKSGIDGLAGKDGINGKDGKPITSVNDLTDDQLKEVGTNAANINDVVNASNDIIEKG
                     FSIAADNGETDHVKLGETVKYTSKDKNIITTVSDNVIDFTLNNDFTIGGPGKDGSIGV
                     KGADGTVGVTLNGKDGSIGLTGPKGADGKDGASATISVKDGAKGLDGNDGKDGESKTR
                     IVYEKPDGTTEEVATLNDGLRFVGDDGKEIVKKLNETLKISGGDTDLTNLSDNNIGVV
                     NNNGALTVKLAKDIDLTKDGSVTIGDTTVNNDGLTIKDGPSVTKAGINAGDKKIINVQ
                     DGEISATSKDAVNGSQLYQVQEVANAGWNLTANGKDKGNVKPGATVDLNNKDGNIIIT
                     KEGNNVTFGLKNNLTIGGKDGKDGQIGIAGKDGKDGVTIKGDGTITAGRDGKDGVDGS
                     IGATGKDGASVVLNGKDGSIGLTGPKGADGKDGASANIAVKDGAEGVDGTNGKDGLPG
                     ENGKTRIVYETKDKDGKTVTEQVATLNDGLIFSGNNEDVKNRQKLNTEVKVKGEGVDK
                     TASENFKSASGNINVKANGTDTLEVQLAKAIDLTEDGSVTTGDTTVNNNGLTIKDGPS
                     VTKGGIDAKGTKITNVKDGDVTATSKDVVSGSQLYNAMQNTGWYLTVDGNVAETSEKG
                     AQRVNNNGKVAVSGGKNIVVSRKGSTVEVATSSNLEFDSVKVGGTTISSTVAKDGVNE
                     LNIAGSKNAQTRITNVAPGVKGTDAVNVNQLKGAENRLNNRISNVDKDLRAGIAGALA
                     AGNLYHVTQPGKSMVSAGVGAYRGQGAIAVGYSRLSDNGKVGIKFSVNSNSRGDTGAA
                     ASVGYQW"
BASE COUNT         9017 a         6832 c         5999 g         8901 t
ORIGIN      
        1 taagcagtat ctaatttaat tttttaagat taacaattaa gaggagcata ttatggcaat
       61 gtcaaatatc ggtttagata aagaaatcgc aaaaaaatta gcagatgagt taaatggttt
      121 attagctact taccaagtgt tttacactaa tgtacgtggc taccattgga atgtacgtgg
      181 tgtgaacttc tttgaattac atgcaaaatt tgaagaaatc tacgatgatt tagtgacaaa
      241 agtagatgaa attgcagaac gtattttaac cttaggtcac acacctcaaa atgcgttcag
      301 ccaatattta accaagtcac aaattcaaga acatattggt gtttcagctg cacaagaatg
      361 tttacgtggt actttaaatg gtttcaaaac attactggga caacaacgtg aaattcttgc
      421 tctagcaaat gatgcaaacg atgaaggtac tgcttctcaa atgagtgatt acatcaaaga
      481 acaagaaaaa ttagtatgga tgttcactgc agcttgtgct gaatgttcag actacgcaca
      541 aggttgttct tgtaactaag ttgcaataat ataattaacc cccgataatg aaagattatc
      601 gggggttact ttttcagata gctatgtcgc aaggatttca atttaaacag ttttttattc
      661 ggcacgacag atgtgcaatg aaagtcaata cagatggtat tctattggga gcgattgctc
      721 acataaaaga ttgtcagaat attttagatc tgggtatagg ttctggttta gtagcactta
      781 tgcttgctca gagaacagat gattgttgtc acattactgc gttggaactt gaaccaaatg
      841 cctaccaaca agcggtcgaa aatgcccaaa attctgcatg ggcaaatcgg atttccgttt
      901 tgcaaggtga tgtgatgcag caggcatttg aacagaaatt tgacttgatt gttagtaacc
      961 caccttattt tgcagattca cttgcagctc gaaccacaga gagagattta gctcgctcaa
     1021 ttagccatta cagccacttg aattggctgg caaaagcaaa accatggtta gcagagaacg
     1081 ggaaaattac actgatttta cctatagcag ctgcagaaaa attagttgac caaagtgaac
     1141 aaattggatt gtattgtgtt gaacaatggt taatttttac caagagcggc aaattggcta
     1201 aacgcagtat agtgagtttt agtttaaaca agcaaaagcg tgaacataaa gagctgatca
     1261 tctatgatct agataattgt tacactactg agtttaaaag acttacccaa gatttttatt
     1321 tgaattttta atttactccc cgggttagtg ttttccacaa atcttcttca gctacgatga
     1381 tctagcctta agctaaaaag cagattacca cccaagataa tccgcttttt agacttagct
     1441 attatgccaa acttgctacc attaccgctt taatagtgtg cattcgattt tctgcttgct
     1501 cgaatgccac attcattggc gattcaaaca cctcttcggt tacttcaatg ccgtttgcca
     1561 gtgccggata tttttcggcg atctctttac cgactttagt ttcactgttg tggaacgccg
     1621 gtaagcagtg cataaatttc actttcgggt tgtcggttgc ttgcattaat tcaggcgtta
     1681 ctcggtaagg cattaataaa tctatacgtt cagtccagct ctctagcggt tcacccattg
     1741 aaacccaaac atcagtatgc acaaaatcga cacctttaat tgcagtctca atatcttcgg
     1801 ttaccgtcat tcttgccccc gattcagctg caaatttttc acacattttc acgaatgcat
     1861 cttccggtaa taaggctttc ggggcacaaa ttcgcacgtc catccccaat ttcgccccaa
     1921 tcaacaggag tgaattaccc atattattgc gagcatcgcc gatatagaca taactgattt
     1981 ggctaagcgg tttttcgcaa ttttcgatca tcgttagcac gtcagccaac atttgggttg
     2041 ggtggaattc atcggttaag ccgttaaaca ccggcacgcc ggcataatcg gcaagctctt
     2101 gtactaccga ttgtttaaag ccgcgatatt gaatcgcatc atacattctg cctagcactc
     2161 gggcggtatc tttcattgat tctttatgcc cgatttgcga ggagttcggg tcaatatagg
     2221 taacgtgagc cccttgatcg taagctgcta cttcaaaggc acaacgagta cgggtcgagg
     2281 ttttctcaaa aattaaggca atatttttgc cctttaattt ttgctgctca gtgccggcat
     2341 atttcgcccg ttttaaatct cttgctaaat ccaacaaaaa gcgaatttca cgctcagtgt
     2401 ggtttactaa actgagtaaa tgtctgtttt ttaagttaaa tgccattttg tttctccctg
     2461 taaacattaa aatttatttt atgcaaaata attgcataaa aattcactta tagcaaacag
     2521 aatttgctta ccctcattcg ggtaaataaa actcgccttt gccgactaaa ataacctctc
     2581 cgccaacaaa aatcttcccg ttttgatcga cttttaataa caggcgattc ggccgttgaa
     2641 tttcatcacc ttgtgagatc tgaagctgga ttggtatttt gccttgtgca atgtgccaac
     2701 cgcctaaatt tgccgctgcc gaaccggtgc cggggtcttc gacaatcgaa ccttgcgatt
     2761 gaaaaaacag tcgcactttc gcctcatttc cctcacgaca ccaaacatat acactgtctt
     2821 tcaaaaatgc tttttcagcc agatttgcat ttattttgca cttttcgacc gcttgttgag
     2881 aagctaactc aaccaataac tgctccacgc cggtgtttac ataacaaggc tcggacgcaa
     2941 tatccgcaac attcagcccc aatattgagg cacattctgc acggcttagc ggtgtgtttt
     3001 ccaggttcac accattggtt aaagcaaaag tagtcacatt atgttgatgt tgaatcgcta
     3061 ccaatccggc attagtttgc aagcgatagg ttgttggaaa atcaaaggcg gaatgcaaca
     3121 caaaagccgc tccaacagtt gggtggccgg cgaacggcat ttcataatca ggcgtaaaaa
     3181 ttttgagttt tttgaccgct tgtgaatcgg tggaagattg aataaatacc acttcagaaa
     3241 ggttaaattg gcgagcaata agttgcattt gtaagtcggt taatccgtcc gcttcataaa
     3301 atactgcaag cgggttgccg ccaaaatggc ttgttgcaaa cacattcacc agcaaataag
     3361 gatagctctg catttatcac tccttacata aacttaaagc cacattgggc gaaaattcta
     3421 ccattttggt ggcgaatcgt aaaattggaa aatttatcgg tatccctctt tagagttaac
     3481 tatttttgat ttatctcaaa gttttaaaaa aaagattagg tcatacttct ttctagtgat
     3541 tattttttaa tttgaggttc ttatgcttta tgcagaattt ttacttttat tagccttttt
     3601 atatgcaggt agccgttacg gtggcatcgg tttaggtgtg gtttccggca tcggcttatt
     3661 tgttgaagtg ttcttcttag gaatgccgct ttccgctccg ccaattagcg tgatgctcgt
     3721 gattttggct gtagttactt gtgcctccat tctagaagcc gctggcggtt tgaaatttat
     3781 gttgcaagtt gccgaacgca ttttgcgtag caacccaaaa cgtattacct ttcttggccc
     3841 acttgtcact tatctgatga ccttaatgct cggcacaggg cattcggttt actctattat
     3901 gccgattatc ggtgatattg ccttaaaaaa taaaattcgc ccggaacgcc cgatggcagc
     3961 agcctctgtt gcttcacaat taggtattac cggtagccca ctttctgctg cagttgccta
     4021 ttacttaacc gaaatcgtta aattaccggg ctttgaaggg gtgactttat tgaatgtagt
     4081 cggcgtaacc atcaccgcaa ccttctgtgg tgtgattgcg atgtcattat atagcttacg
     4141 tcgtggtaaa gagttggaag acgatcctga gtatcaacgc cgtatgcaag accctgagct
     4201 acgcaaacaa atcgagcaaa cgagtgcaac gtctttagac gaaaaactac cggcaagtgc
     4261 gaaaaactcg gtttatctgt tcctagccgc tattgcaacc attgtgatta ttgcaatgat
     4321 tccggctatt aaaccaacgg ttgctgctac aggaaaagtt gccggtatgg atcaaatcat
     4381 tcaaatcgtg atgctaactt tcgggggttt aatcttaatt ttaactaaaa ccgacccgaa
     4441 aaaagtacca aacggcatcg ttttcaaatc cggtatggta gcaaccattg cgattttcgg
     4501 gattgcttgg atgagtgata cttacttcac ccatgcaatg ccagcgttca aagaaggggt
     4561 aacagaaatg gttcgagccc aaccttggac attcgccttc gccttgtttg cggtatctgt
     4621 agtagtaaac agccaagccg taaccgcaaa aatgttatta ccggtaggca ttgcaatggg
     4681 cttgcctgct ccattattag ttggtttaat gccggcaact tatgcttact tctttattcc
     4741 gaattatccg tctgatatcg caaccgttaa ctttgacgta accggtacaa ctaaaatcgg
     4801 taaatattac ttcaaccaca gctttatggc tccgggttta gttggcgtaa ttactgcctg
     4861 tattgtcggt atcgccgttg caaatgtgct aatttaattt taacaaaaaa acaagcggtc
     4921 agattaagta aattttttac caaatctgac cgcttgatta tttactgcaa aaccaattag
     4981 gctttgttaa agagttttgc atctaacgag tattttccgc caccgataaa aatataggtt
     5041 aagaataata ccgaatacac gcctgctaat tcaccgccgt ttaataaagg taatagcaca
     5101 ttgccttgag ctccgtgagc aataaagaac gcgtatgcca tcatacctga aaggataaac
     5161 gctgtttggc gggtaaatag acctaaaata aagaaaattc cgcccacaat ttccaaaata
     5221 ccgcctacac cataaatgga ggcaaggggt acactgccgt ttccgttggt catcgacatt
     5281 ggaaattcaa aaaatttcgc tgtgccgtgt aataaaaaca tataaccggc aacaacacgg
     5341 gtgattaaaa acgctaaagg ttgtaaattt gttaaagtag agttcatttg ctttccttaa
     5401 aataaattgt gatataaagg tcaattgatt gaggcaggca ttctatttta aaaacctata
     5461 cttcacaatc cagccgtcat gaaatagatt atttaccatt aataaacaat taggctctcg
     5521 ctaacaccca aacctgaatt tctactactc cagctttgag taactcggca caaattacat
     5581 ttaaggtgga acctgtggtg agcacatcat caacaatcgc cactcgttta taggctttta
     5641 acggttgata gaaaaatgcc ccacgcagat ttttccgccg ttcagcagcg gtcaattctc
     5701 tttgtgagac ggttgctctc acacgttgta aactctgggt atccagcgga atctgtaacc
     5761 acttcgataa ccaatcacac aataattcgc tttgattaaa ccctcttttc caatgtctgt
     5821 gccaaaaaag tggtacaggc ataatcactt caggcaagct cagaacctgt tccctttgag
     5881 cttgtttgat tgccagcagc aattgtcggg caagggcttg atcccaccaa tattgctgct
     5941 ggaacttaaa ttgatgtacc caatgtgaaa gtggcgctcg gtattcattt accctcacta
     6001 atttatgcca cttcggttca tttttcaaac aatagccaca agcgtttcga aactccaccg
     6061 cactcattcc acaatgacga caataagggg ttggttttag caatttttgg caatggctgc
     6121 aaatgccttg cacgccaata gcgagtggat gattacaatg aaagcaacgg aagccgaata
     6181 aattcacatt tcctcctttt atttgcagat tatcaaattt agccttattt tttccggcta
     6241 tttttgtgac atcgctcgaa aaaagagtaa aatctcatta tcagtaaata aaaaggaaac
     6301 cgagatgaaa tccctccaaa aaccgatcaa aattgtcttt ttcgatattg atgacaccct
     6361 ctatgtaaaa cataaagcct atattccaaa atcaattacc gagcaggtat tacctcgttt
     6421 aaaagccaaa ggcattattc cggccattgc caccggcaga aatcacggct gttttcctga
     6481 agctctcaaa ccttatttaa accctgaaat cggttttgag ctgtttgtta ccattaacgg
     6541 gcaatataat ttctataaag atcaaataat tagtgattat tcgttaagcc gtgagcaaat
     6601 tgaacgtatt atcgaaaaag cgaatgcttt gggtattctg tatgccttta ttacgccaat
     6661 gacgattgca gtttccgaaa ccaatccgat tgtgcacgaa gcggttttac cgatcacacc
     6721 gaattatttg atcgatccac actactacga aaaagagaaa attgtgcaaa tgttactgtt
     6781 ctacaccgaa gagcagaaac aagcggtcga aaatagtggc atttttgcaa atgatttaaa
     6841 agaggctcgc tggcacccca atgcggtaga tattctgcga aaagaaaatt cgaaagctcg
     6901 tggcattcaa gatgtattag caaccttgaa tattgagatt gaaagtgcga tggcatttgg
     6961 cgatggtatt aacgacttgg aaatgctccc gaccgtaggt gttggtgtgg caatgggtaa
     7021 tggcgtgccg gaattaaaag cggtggcaga tttcatcacc aagccgcttg aggaagacgg
     7081 cattctatac gctcttgaaa ctcttgaggt gatttaaaag caagcggttg taagtttttc
     7141 tccatttaca accgcttgta gtttctaatt acgcctaaat agcttatcgc ctgcaatcgc
     7201 taaaatcgcc ccactgacga ccaccaacgc cccaagataa ctgatccaat tcatatccgg
     7261 cttggcaaaa atatgcggat aaaaatagta gctaaggttg gaaaagatca tcgtaaaaat
     7321 cggcaacatc gtggttacaa tgctaacctt tgaagtatcc caatgattca acgcctcacc
     7381 gtatgaaccg tagccaatta aggtgttcaa cagcaataaa taaagcaacc ccacagaaaa
     7441 ccatcctcaa gattgcctaa ctgtgccggt gaggcaaacg gtaacatcag cagagaacag
     7501 ccgatgtaaa taataaacag cacttgctga gagttaaatt tcgctaataa taatttttga
     7561 gccacgccgt atagcaccca aatcaagctg gctccggcac tcaataacac tccgagagcg
     7621 taggtgttga gctgtaaaat ttcagcaaat ttatcgttaa aaaatgcgac aagccctgca
     7681 atcaataaca caaatccaat cttttgaaac aagccgaact tttccttaaa caataatacg
     7741 cctagtagaa tcatcgaaaa tggagctaac tgccacaata cttggttaat ggtgggcgaa
     7801 acatagtgta gagcctctgc aaacaaaaag aaatttgccg acagaccaca cacccctaac
     7861 aaaattaaac cgagttcttt tttgctacaa gcggtcaatt tgggtaaacg ttttgcaaat
     7921 cctagaatca gcaatagccc tactgatgcc acaacgaacc taacccaaac taaagtttgg
     7981 gcatctatca ctttcaatac ttgctgggcg gcaatcggta gcgttcccca ggtcattgct
     8041 gcggttaatg caagtgaaaa gccaagtaag gggcgttgtt tcatcgtgga aattcctttt
     8101 tctattctat gtttctatat tttagaaaga ttgagataca aaaaaacccc gccattggcg
     8161 aggtctctta ttgattttga aatgattagt cagcaatgat gcttacatat ttacggcttt
     8221 tctcgccttt cacttcaaat ttaactttac cgtcagcagt tgcaaataaa gtgtggtctt
     8281 tacccatacc tacatttgaa cctgcgtgga atttagtacc acgttgacga acgataatgc
     8341 tacctgctaa tacagattca ccaccgaaac gtttaacacc aaggcgttta gcttcagaat
     8401 cacgaccgtt acgagttgaa ccaccagctt ttttagttgc catcttctag atctcctctg
     8461 aaattatgct tgaatcccag tgattttcac ttctgtgaac cactgacgat gaccttgttg
     8521 tttacggctg tgtttacgac gacggaactt aacgatttta actttctcgc cacgaccttg
     8581 tgctacaact tcagccacta cttttgcacc tgctacaacc ggtgcaccga ttttaacatc
     8641 ttcaccgtta acgaccatta acactgagtc aaattcaact ttctcaccag ttgcaagttc
     8701 aagtttttct aaacgaacta cttgaccttc acttactcgg tgttgtttgc cgccactttg
     8761 gaaaactgcg tacatattta ctccgctatg tgccaactgc ttttgctttt aggcactaaa
     8821 ttaattcata aaaatagggt tgcaattcta cggaaaaaga ttcgaaagag caagagcgat
     8881 tttgagaatt ttttgaaatt tgcaaaaaat ggtaaaaata ctaccgcttg tttcaactgc
     8941 gactaaaaaa caatagactg ctccgatttt acaacaaaat cataattctt ttttgaacac
     9001 aggctaaatt aaggtagaat ctactcaatt ttcgtcttac tttatggatt cgatggctgt
     9061 gcaacttttt tctttagaac aaattcaagc ccttgcgaat gaagatatgc aagcggtaaa
     9121 tgccgaaatt ttagctcaac ttaattccga agtgctactg attaaccagc tcggacatta
     9181 tatcatcgca ggcggtggga aacgtattcg cccgttaatt gcggtgcttg cggctcgtgc
     9241 cttgggttat cgtggtaaaa agcatatcac ggcggctgct tttattgagt ttgtgcatac
     9301 tgctacactt ttgcacgatg atgtagtcga tgaatccgat atgcgtcgtg gcagaccaac
     9361 cgcaaacgcc cattttggca atgcggctag tgtattggta ggggatttca tctatacccg
     9421 ttcgttccag atgatgacgg atttagactc tctgcgtgtg ttaaaagtga tgtctgccgc
     9481 caccaatgcg ttggcagaag gggaagttca gcaattaatg aacgtgaacg acccaaacac
     9541 cactgaagcg aactatatgc gggtcattta caataaaacc gcccgcttgt ttgaagccgc
     9601 cactcaatgc gtggcgattg cggctgatgc ttctgaggaa attgaaaccg cattaaaaaa
     9661 ttacggttgc tacttaggca cggcattcca gctgattgac gatattttag actactccgc
     9721 tcaaagcgaa agtttaggca aaaacgtagg cgatgacttt gtggaaggta agccaacctt
     9781 gccattgctc cacgcaatgc acgctgccga caaagcaggc aaaactactc aagcagagct
     9841 gattcgcaat gctatcgaaa acggcggcga attggaacaa attccacaag tattggcaat
     9901 tatgcaagaa catcaatctc tggattatgc catgcaaaaa gcccgtgaag aagcccaaaa
     9961 agcggtggat tcattagggg ttttaccgga aagcgagtac aaacaagcct tggtttcatt
    10021 ggcgtattta tcggtggatc gctcttatta atttgcaaaa aatcatataa atttaaccac
    10081 ttgtaggggc aaatgatatt tgccccataa cctataattc ttttgggcaa atgttatttg
    10141 ccccaacata acaatgactg aacaaaacca acgaccccaa gaacatattg aaagcgtacg
    10201 agcgagacgc cgtgctcaaa atcagaaaaa aggcccgaat gccccgtttg tgcgtgagaa
    10261 attaacgctg ccaaacggac ataacaaatt actgctgcac tcttgctgtg ccccttgctc
    10321 gggtgaggta atggaggcta ttcacgcctc cggcattgag tttacgatct atttttataa
    10381 cccgaacatt cacccgctga aagagtattt gatccgcaag gaagagaata ttcgctttgc
    10441 cgaaaagtgg ggtattccgt ttatcgattt agacgatgac tacgaaaacg accgcaaaga
    10501 gtggttcaaa aaagccaaag gaatggaatg ggagccggaa cgaggcattc gttgcacaat
    10561 gtgctttgat atgcggtttg aaaaagcagc ggaatacgct cacaacaacg gtttccctgt
    10621 atttaccagt tgcttaggca tttcccgatg gaaagatatg aaccaaatca acgactgtgg
    10681 tcaccgtgca gcagccaaat ttgatgacgt ggtttactgg gactacaact ggcgtaaagg
    10741 cggcggctca caacgaatga tcgaaatcag caaacgtgaa cgtttctacc agcaagaata
    10801 ctgcggttgc gtctattcgt taagagatag caacaaatgg cggttggaaa cagggcgtca
    10861 gcggattgaa atcggtaagc tctattactc acccgattaa atgttacttt tctttgcttc
    10921 gccaaagaaa agtaaccaaa agaaaggcga cccgaacttc gcttagttac gatttcctta
    10981 acggaaaatt tgtaaactcg ctacgctcaa acagtacaaa ttttcctaga aatcgcaagt
    11041 cgctcagacg ggacaagcgg tacattattc aaaatttttt acaaaatata gtgatgtact
    11101 cttcccttct gaaccgcccg aacgtgtttg aattggtagg aaaatttact ctgagcgaag
    11161 cgaatgtaaa ttttccgtga aaccaattca aactaagtga ggataagcgg tgaagtaggg
    11221 gtgtttcttt ggttactttc tttgcacatg caaagaaagt aacgaaaact cagatataga
    11281 tttcaactta aaaatttaca gaaggaataa taacaaatgt caaaattcgc tatggttttc
    11341 cccggtcaag gctcacaagc ggttggaatg cttgccgacc ttgcgccaca atatccaatc
    11401 gtggaagaaa ccttcaaaca agcaagtgat gtgcttggct atgacttatg ggatttagtg
    11461 caaaacggta ctgccgaaga gttagggcaa acccaccgca ctcaacctgc gttgcttgcc
    11521 tcaagcgtgg cacttttccg catttggcaa caaaaattcc ctgagcaaaa accagccgtg
    11581 atggcagggc atagtttggg tgaatactca gcgttggtgt gtgccggtgt gttggatttc
    11641 caagatgcga ttaaattggt cgagttgcgt ggtcgtgcaa tgcaagaagc cgtgccggca
    11701 ggcagcggtg cgatgtttgc gattatcggt ttagataacg aaagcattat taaagcgtgc
    11761 gagcaagcag caagcgagac cggtgaaatt gtctctgcgg taaactttaa cagcccgggg
    11821 caagttgtga ttgccggcac aaaagcagcg gcagaaaaag caggagaatt gtgtaaagcc
    11881 gcaggtgcaa aacgtgcgtt accattagcg gtgagcgtac cttcacactg tgctttaatg
    11941 aaaccggcgg cagaaaaatt agccgaagcc ttgcaaaata ttgagctaaa tcaaccgctt
    12001 gtccctgtta tcaacaacgt ggatgtggca gtggaaacag atgccgatac cattcgtaat
    12061 gcacttgttc gccaacttta cagccctgtt cgttggacgg aaaccgttga aaaaatggca
    12121 caagatggca tcactacttt atatgaaatc gggccaaaca aagtcctaac cggtttagca
    12181 ggtcgtattg taaaagaatt atcagccaaa gcggtaaatg atgttgccag ctttgaggcg
    12241 gttgaggctt aattttcggg agcgtaaaat gagtaaagaa accctattta tgctaataag
    12301 tgcattgatt gccttagtga ttttaccttt agcttatact gttggtatcg ctaaagaaac
    12361 attaggcgga aatatgggaa tgttatccat tgctgccggt tgctcatttt tagcctattt
    12421 tttaagtcta aacccgaaaa ttcgccacgc ctttatcgga ggttcagcta ttacagctgc
    12481 tgctattcaa gcttgggtat tatatggtgt gctattaagc gaaaatgacc ccaaaagtgc
    12541 ggtcgtttta tttcaaattt atctgtttag tagtttaggg ccactgtttt tttcagctat
    12601 ttgggcattt actcgcccac gttggattta ccctaaacaa ggtagtgcgg tgaaatatgc
    12661 cttatttggt ggcttaacga ccgtgataaa ctacttgatt acccttttta ttttttatat
    12721 tctgacgtta taacgtcata ctaaggagaa tttatgagca aaatcgcatt agttacaggg
    12781 gcaacccgtg gaatcggcaa agcgattgcc gaagaattgg tagcaaaagg ctacatcgta
    12841 gtcggcaccg caacctctga aaaaggggcg gaatctattt cagcttattt aggcgagaac
    12901 ggcaaaggct tagtgctaaa tgttgccgat gcagagtcga ttgagagcgt attaaagcag
    12961 atcaaagaga cctttggcga tgtggacgtg ttagtcaata acgccggcat tacccgtgac
    13021 ggcttattaa tgcgtatgaa agatgaggat tggttcgaca tcattcaaac taacttaact
    13081 tcggtttatc gtttatccaa agcggtatta cgcccgatga tgaaaaaagg cggacgcatt
    13141 atcacgatcg gttctgtggt cggctcaatg ggcaacccgg ggcaaaccaa ctactgtgct
    13201 gccaaagcag gcttagttgg tttttctaaa tctttagcga aagaagtagc aagccgcggc
    13261 attacggtaa acgtggttgc tccgggcttt atcgccactg atatgaccga tgagctaacc
    13321 gaagatcaga aaaatgcgat tttaagccaa attcctgccg gtgaactcgg ttctccacaa
    13381 gatattgcca aagcagtcgc tttcttagcc agcgatgatg cccgttatat caacggtgaa
    13441 accattcacg ttaatggcgg tttatatatg agctaatccg ctacaagcgg tcttttttca
    13501 accgagcttt gtaaattcag agttcggttt tgttatttgt tattttgtgt tatcacctgc
    13561 tttataggta taggtgaaaa agtgtgaata tgttatgact agaaatacat tagtagtagg
    13621 ctttttattg tttgctattt tctttggtgc cggcaatctg attttcccac caaaattagg
    13681 ttatgaaagt agtacagaat ttttctcagc catttcaggc tttgttttaa ctggagtagg
    13741 gcttcctcta ctcggtatta tcgtcagtgc attttataat ggaggctata aatctgcatt
    13801 agacaaaatc cacccttggt tttctttagc attcctaact tctatctatt tagcgatcgg
    13861 tccattcttt gccggtccgc gcacggcagc aactgcctat gaaatggcga taatgccgtt
    13921 tttaggggat tccagccaag tgtcaatgtt aatttttacc ttaatttact ttgcctttac
    13981 cctatggtta gcgctaaatc caaataaaat ggttgatcgc attggtgcaa ttcttacccc
    14041 gatcttgctt ataaccatca ttggattagt tattcgagcc ggctttattt tagataccga
    14101 tccacaaatc actacgccta atacgaatga acaatcttac ttttttaaag gtatggttga
    14161 tggctatcta actatggatg cacttgcttc gttagcctat tcggtaattg tattaaatgc
    14221 tattcgtggg aaaggggtaa gccaagccgc attacaacgc caaacagttt ctgccggctt
    14281 agttgcagca gttgctctag ctgtaattta tatttcattg ggttggattg gtaataatat
    14341 gccaattagt gcaaacacac tttcgatgtt atcagaaaga aaattggatc taggtactta
    14401 cattcttaac actgtgacta cccaagcctt cggtgaactc ggacgtagtg tcttaggagt
    14461 gattgtttca cttgcctgtt taaccactgc tgtcggttta gccgtatcag tcagtgaata
    14521 ctttaatgaa attttcccga aaatttcata taaagtttat gctatcttat ttactgtgat
    14581 tagttttact gttgctaacc aaggattaaa agaagttatt agcaaatcca ttccggtatt
    14641 attagttctc tacccaatag caatgactgt cattttaatg ttgctgatta atttagtgat
    14701 taaacttccg ttgtctgcac aacgtctatc actcctatta gtgacaattg tagcgatagc
    14761 ttcagttgcc ggtgtcgggt ttaccgaaaa cttgcctcta aaatcctact cgatggaatg
    14821 gctacctttc gctatcattg gagctattat tggagcaatt atccacccgc ttaccggtcg
    14881 aaagcataaa taaagtaaag gcagtgagca ttcactgcct cttttttagg agagaataat
    14941 gcctgaatta cccgaagttg aaaccagcgt tcgtggtgta tcgccctatt tggttgggca
    15001 aactattgaa caaatcatcg ttcgtcagcc aaagttacgt tggacggtga gtcctgaatt
    15061 aagccaaatg gcaggggcaa aaattaccgc agtagaaaga cgtgccaaat atctgattat
    15121 ccgcaccgac aaaggcgata ttttggtgca tctgggaatg tccggctcgc tcgggatttt
    15181 gcaagaacgt caacaaaaag aaattggcaa acacgaccac gtcgatctta ttacccaaaa
    15241 cggcacaatt ttacgctata acgaccctcg caaattcggc tgttggctat gggcagaaaa
    15301 agcagaagat cacgaactgt tgcgtaaact cgggcctgaa ccgctttcaa acgatttcac
    15361 agcagattac ttatttgcaa aaagccgcaa aaaaacgacc gcttgtaaaa cctttattat
    15421 gaccaatgaa gtggttgttg gggtggggaa tatctatgcg tgcgaaagtt tatttatggc
    15481 aggcattcac cctgagcttg cagcacaaaa cctgactaaa aaacagtgcg aacgtttagt
    15541 aaaaaccatc aaagaagtgc tgactaaagc gattattcaa ggcggcacaa cactgaaaga
    15601 ttttatccaa cctgacggca aaccaggcta ttttgctcaa gtgttgcaag tgtatggaag
    15661 aaaaggggaa acctgtaatg actgcggaaa gccgattgaa actaaagtaa tcgggcaacg
    15721 taatacctat ttttgcccga agtgtcagag attgccgaag taatctaata ataaactctc
    15781 tccccctgag ggagagagac agcttgttga aacgttaagt gaaacaagca gagagagggt
    15841 aaaacctaaa cctgcaacca aaaggtaaca ggcccgtcat tttgtaggct gacttgcata
    15901 tcggctgcaa attgcccggt ttgggtatga atcttagtgg cggcttgttg atgaaagtag
    15961 gcatacaaac gttcggcatc aaccgggctt gctccttttg agaaactagg acgcaagcct
    16021 ttattggtat ccgccgcaag ggtaaactgt gaaaccacta acaaactgcc acctgcttgc
    16081 tgtacgttta agttcatttt cccctcgcta tccgaaaaca cccgataatt cagcactttt
    16141 tccagtagct tatctgcttt cgcttcatca tcgtcttttt ccacaccgag cagcaccaac
    16201 aaaccgcttg caatttcgcc aacgacttgc ccttcaacct ccacttttgc gaatttaacc
    16261 cgctgaatta agcctatcat taatgctccc cttgtctgtt tccatttcgt ctaaaaccgc
    16321 cgcaaattgc ccgccaagta ataccacctg ccaacttaac tgaatccata acagcataat
    16381 cggtaacacc gctaatgctc cataaattgc ctgataagac gggaaggcag taatatacca
    16441 aataaaggct ttcttcccta aagtaaagaa aatcgctgcc attaatgccc cgatagcagc
    16501 gtgttgaaat tttacctttc taattggaat aaatttatac actaaggtaa aaagtagcca
    16561 aattagcaaa aacggcatca attctaataa atgctgcccg agcgataacg ctccatttcc
    16621 attaaaaata gaaagcgaca ttacataggt gctaatcgca atgctagcac cggcaagcag
    16681 cgggccaaac agcaaaatga gaaagtaaag caagaaagag aaccacatcg gacgctgacg
    16741 attatcgtgc caaatggtat tcaatgcctc atcaatactc ttaatcagca taatagtaac
    16801 cacaaataag ccgataaaac ttaccagccc catttgtttg gcattactga caaacaactc
    16861 aatgtattcc gacaccatct cgctcgcact cggggcaaag ttgtcataaa tgaacgcttt
    16921 taactgctcg tttgcttcgt ggaaaatcgg aaaaaaggta aaaatggaaa acagcacgac
    16981 aataaacggc actatcgcca gcattgtgct ataagtgaga taaccggctg aaatcgcaat
    17041 gttattttca ttgtaacgct tggcaaagag cttaataaat ctccacagtc gatttaacat
    17101 cttaacctct caccaaataa tcgccttcac acacccattt gtaggtggtt aaggcttcta
    17161 atcccatcgg gcctcgtgcg tgtaatttct gcgtgctaac tgccacttct gcccctaaac
    17221 caaactcacc accatcggta aaacgggtgc tggcattaat ataaaccgcc gcggcatcaa
    17281 cctgttgtac aaattgacgg gcaagttgat aatcggaggt taaaatcccc tctgaatgct
    17341 gcgaaccata atggcggata tgctctaccg cttgttgcag gtcattcacc accaccacgt
    17401 taagatcaag cgataaccac tcttggctca attttgcttg atcaagcggt tcaattcctt
    17461 caattttttg caaatcgtta ctgtgaatag taacgccaag ctgttgcatt ttggcgacca
    17521 atttcggcaa aaattccacc gcaatcgctt tttccaccaa cagcgtttcc agcgtattgc
    17581 aagtgcttgg gcgttgcgtt ttggcattag cgatgacctc tagagatttc tcctgatccg
    17641 ctgttttttc cacaaacaga tgacaaaccc caatcccccc cacaatcacc ggaatggtcg
    17701 aattttcttt acagaattga tgtaaacctg caccgcctcg agggatcacc atatcaatgt
    17761 agcgatctag cttcaatagt tccaataata aggctcgatc cggatccgtc accgcttgca
    17821 ctgccaattt cggcaagccg gctttttcta acgcatcttg cactacatca accaacacag
    17881 cattggtaaa tttggtctct ttaccgccac gcaaaatcac tgcattgccg gtttttaggc
    17941 ataatgatgc cacatcaatg gtcacattcg ggcgagcttc gtaaatggtt aaaatcaccc
    18001 cgagcggcac acgctggcgt tcgattttca aaccgctgtc taacacgcca ccgtccatca
    18061 cctgccccac cggatccgct aatttggcaa catttcgcac atcgttagca atgtctttta
    18121 gccgatcttc attcaataat aagcggtcaa taatcgccaa tgaaatccct tgtgcttgag
    18181 caaattcaat atctttggca ttagcgtata aaatttcttc tgcacgttgc tcaaggctat
    18241 cggcaatcgt gagtaaggct tggtttttct gtaggttgcc aaattgagcc agctcaaaac
    18301 tagcttgttt ggcttgctgg gcaagttcta tcatctgcat aaattaggtc tcatttaatc
    18361 aatattctcc ataatctaac acgttctttt atgtgaagaa atatgcaaaa gccaagaaaa
    18421 ttggataaaa tgggggaatt ttaaaacatt acgcaattcc cctctccctg atttttctcc
    18481 tgaacggaga aaaatctatc cctctcctac aaggggagag ggtagaattt aactctctcc
    18541 ccttgtggga gagagaccgc ctacagattc gttcagaatc tgtaggcaga gagaggggta
    18601 aaaacagata aaacttaaac aaaatgataa acactacccc taaacagcta atccacattc
    18661 ttccgcctca actggcaaac caaattgctg ccggcgaggt ggtggaacgc cctgcgtctg
    18721 tggtaaagga gctagtggaa aacagtttag atgccggagc caatactatt caaatcgaca
    18781 ttgaaaaagg cggctctcag cttatccgca ttcgagataa cggttgtggt atcagcaagc
    18841 aagatttacc gctggcactt gctcgccacg ctacgagcaa aatcagcagc ttggaagatt
    18901 tagaagccat tttaagttta ggctttcggg gcgaagcatt ggcaagtatc agctcggttt
    18961 cacgtttaac actgacctct cgtaccgcag agcaaaccga agcatggcaa gcctatgcac
    19021 aagggcggga aatggcggtg gaaattcagc ctgcctcaca cccgattggc acaaccattg
    19081 aagtagcaaa tctgtttttt aacacaccgg cacggcgtaa atttctacgc accgataaaa
    19141 ccgaatttgc ccatattgac gaggtggttc gccgcattgc ccttgccaag ccgaatatca
    19201 gtttcagctt aagccataat ggtaaaatcg tccgccaata tcgcaaagtg caagacaatt
    19261 cggtagagca gcaacaaaaa cgggttgcag ccatttgcgg tgatgagttt attcaacatt
    19321 caacttatat tgacaggcaa cacggggatc tgcacctaca cggctgggtt ggctcaccgg
    19381 ctcttgcccg tctgcaaaac gacctttgct acagctatgt gaacgggcga atgatgcggg
    19441 ataaaaccat caatcacgcc attcgccaag cctacggcga cagcattgca agtggttact
    19501 atccggcttt tgtgatcttt ttggatttag atccgacaat ggttgatgta aacgttcacc
    19561 cggctaaaca cgaggtgcgc tttcatcaag gaagactggt acacgacttt attttgcaag
    19621 gcgtactcaa cagcctgcaa caaacccaac ctacgcttga actgcgaaat gaagtgaacg
    19681 agccgttacc gagctatgtt caagacacta accgccaagc tgcggggcaa aatatttttg
    19741 tgtcgcaaac cgctccacaa gcggccgaat ttacgcaaaa aaatgcaagt cgatcaagct
    19801 atacgcctaa atttgaacga agcaacagtg tgagttcgtc cgctcaaaaa tggtataagg
    19861 aattggttgg tggcgatttg caccaaacaa cgccaactat caaaacgcaa agcacgcttg
    19921 ttgagccaaa aacagaaccc caaactgaac ataaaacaga agccgtttcg caaaaaatta
    19981 cgcaaattgc accgcttgca agccaccatt cacaagcctt agcgattgta aaaaaccaag
    20041 cggtgttaat taaagaagag gaaaattttt acctgcttcc actggcaaca ttagccgagc
    20101 ttaaactcaa gctacaactg gaaaaagggc aatctcaagc gttgttgatc ccactgaatc
    20161 tcagtttaga tcaacaacaa accgaacgct ggcaacaaac caaagaagaa ctaactaagc
    20221 ttggcttttc gatcagcgaa aaacagtggc aagcccaaac acggctcaca gtgctttccg
    20281 taccacaggc tgtcagagaa caaaacctgc aacagctttt atttgctctg ttcaaccaaa
    20341 cacaagcggt caatttagcc gaattttttg caaaaaaatg cgaaaaaccc accgcttgta
    20401 cgctaagtga cgtgattgct ctactctcag aaattgagct ttatgccaat gggaaaaaag
    20461 agctggaggg aataaggaag gaagtggatt tttccaagtt tttatagtct aaagggcaat
    20521 accctttagc caaataaatg agagtggctg ccaattcgca gcagctctag cttatcatct
    20581 tccacttttc gatagataag aaccaaatca ggttggatat ggcaatccct aaagcctttc
    20641 cattcgccgg ttaaagcgtg atcgcagtat ttctcaggta atggcttgtc attaatcaga
    20701 aaatacaacg cctcaattaa tgaagaggat aaagactcaa ccgcacattt tttatagtca
    20761 cgtttaaaag cattactata ctcaatctct cgcattgagt tgctccatta aatccgcaat
    20821 actatttgct gaatgtagct tttcctcgcc attcttaaca gcccttaata cttctgctgt
    20881 ctcaaaatta ggctgataat caaactgaaa acgtttttct gttgcgattt tcgctaatgt
    20941 cattcgcatc acatcagaga cagtcaagcc gataccggct aacacctcac ttgcttgctc
    21001 tttaatttca gggctgattc ttacgcttac taatgcacta tttgccatca aaaactcctt
    21061 ttgtatatca aatgatatac aaaataacat ttaacaaaaa attgtgcaat aaaaaagaaa
    21121 ttcaaagaaa agaaatgaat agttaaaatt agctcgttac aagaaatcat tgagttactc
    21181 aagaaatcaa ggtaatataa agaagtctgg gcggaacacg aacccgcccc tagcatctag
    21241 ccgcttacaa gaacagatag attagttgaa agagcgtgaa aatttcaact gctgcacaca
    21301 gaaacccaag tgcaactaaa atcaatagta gttctttcat tgtaagcctc cttagtgcta
    21361 ctaaggatga tttaggctca ggctactgcg aatagcccta acgagcctac cagtagcaca
    21421 atcaggattg taacaaaaaa gctgtgaatt tcacggcttt ttttgtatct atatacagta
    21481 tattaatatg aataaaaaac cccttgccct ttttttaatg gggccgactg cctccgggaa
    21541 aaccgattta gctattgctt tacgccaaga attgccggtt gaggtaatca gtgttgattc
    21601 tgccttaatt tacaaaggaa tggatattgg cacggcaaag ccaagcaagg aagagcttgc
    21661 ccttgcaccg catcgcttga ttgatatttt agaccctgcc gagagctatt cggcgatgaa
    21721 tttccacgct gatgcgttgc gtgaaatggc agatattacc tcacagggta aaattccgct
    21781 cttggtgggt ggcacaatgc tttattacaa ggcattgctt gaagggttat ctcccctgcc
    21841 ctctgccgat ccagccattc gggctgaaat cgaaagccga gcggcacaac acggctgggc
    21901 aacattgcat caagaattag tgaaaatcga cccgattgcc ggtgcaagaa ttaacccaaa
    21961 tgacagccaa cggatcaacc gagcgttaga agttttttac attaccggca aaacgatgac
    22021 cgaactcact gctcagcaag gtgaggctct accttataat atcttacaat ttgcaatcgc
    22081 tcctcaagat cgtgcagttc tacaccaacg gattgaacaa cgctttcaca aaatgattga
    22141 gctaggcttt gaagaggagg tcaagcggtt atttttacgc aaagatttgc atattaattt
    22201 gccctcgatt cgctgtgtgg gctaccgcca aatgtgggaa tatttgcaag gcgatatttc
    22261 gctcgatgag gcgatcttta aaggcatttg tgccacccgc cagctggcaa aacggcagat
    22321 tacttggctg cgtggctggc aaggcgaact gacttggtta gatagtttag ctccgaccag
    22381 ttctaaagca aaaatggtgg aaaagatcga tcattattta aagaattgtg ataatatcta
    22441 aacgcctttg gcacttatcg cattatttgg tgtcttaaaa atcacacaac tataaaaagg
    22501 aaaataacaa tggcaaaagg tcaatcttta caagatccat atttgaatgc acttcgtcgt
    22561 gagcgtattc ctgtttcaat ttatttagtt aacggcatta aattacaagg tcagatcgag
    22621 tcgttcgacc aatttgtgat tttattaaaa aacactgtaa gccaaatggt gtataaacac
    22681 gctatttcaa cggttgttcc tgcccgtgcg ttatcgcata acaataacaa ccaagcccaa
    22741 cacgctcagc ctgctgccga agtaactgaa caagcggaat aataacatta ttactcaacc
    22801 aatgttaaac gaatcattgc caaactcaga agaaaattct gcgtttggct ttgctttatc
    22861 tgaagcaagc caaactacag aagccgcctc gcctaccgat ccagaaaatc aagataaagc
    22921 cattttggtg catctctatc tcgggcaaca taaagatgtt gaaaatttgc tggaatttaa
    22981 aacgctggca gaatctgccg gtgtcgaagt gctggcaacg cttaccacca gccgccaaag
    23041 ttcgcatatc aaatattatg tggggcaagg caaagcggag ggaattgccg aagcggtaga
    23101 acgactcggg gcaacagtag tgctggtgaa ccatcaactt agcccggctc agacccgtaa
    23161 tttgcaatcg ttatgcggct gccgtgtggt ggatagaacc ggcttgattt tggatatttt
    23221 cgctcaacgg gcaagatcgc acgaaggcaa actacaagtc gagctggcac aacttcgcca
    23281 tttatcgacc cgtttggttc gccgagttac taatcaagac caacaaaaag gcggagcagt
    23341 tggcttgcgt ggtccaggtg aaacacagct cgaaaccgat cgccgtttga ttaaagtgcg
    23401 aatccaacag ttactcaacc gcttggaaaa agtcagcaag caacgcaatc aaaatcgaaa
    23461 aaccagacaa aaagccgata ttccaacagt atccttagtg ggctatacca atgccggcaa
    23521 atctaccctg tttaatgcga ttacccaagc tggtgtttat gctgccgatc aactttttgc
    23581 gacccttgac ccgactttac gccggattca ggtgcaagat gtcggcacga caattcttgc
    23641 cgatacggta ggttttatcc gttttctacc gcacgattta gtttcagcct ttaaatctac
    23701 cctgcaagaa accaccgaag ctactttact gctccacgtc attgacggct cagacgaacg
    23761 caaaaacgaa aatattgatg cggtaaatca agtgttggac gaaatcggag cgttagatat
    23821 tcctacttta ttggtattca ataaaattga taaattagaa ggtgtagaac cgcatattga
    23881 acgcaatgcc gatggcacgc cagttgccgt gtatctttcc gcccaagaaa atagcggcat
    23941 tgagctgtta ttccaagcca ttcaagaaag gcttcgcagt aacttagtgt gtgaaaactt
    24001 gctcctcccg gttactgccg gtgcaattta cgcacaattt aaagcagaaa actgcattaa
    24061 aaccgagcat tttaatgagt tcggtgaacg gattatctct attgaaatta acgaagtgca
    24121 atggaacaaa tgggtgaaac aatttccgga tctagccgaa tatattgagc tggcaaaatg
    24181 ggggtaatta atctcacttc tgagtaagtt atatttaaat tatgcaagcg gtcaattctt
    24241 tacgtttttt tgcaaaaaag tgtaaagaat tgaccgcttg ttttatccat taaatccaat
    24301 ttagccaata aaaaaatccc tcaaataaac cagatttccc cgttctattt gaaggatttt
    24361 atttattctt ccccaaaagt ggggaagaaa agcttaatca agcagttact accactgata
    24421 acctacgctt gcagcagcac ctgtatcacc acggctgtta gagttaacac tgaatttgat
    24481 acccacttta ccattatctg ataaacgaga ataacctaca gcaatagctc cttgaccacg
    24541 gtaagcacct acaccggctg aaaccatcga tttaccaggt tgtgttacgt gatataaatt
    24601 acctgcggct aatgcacctg caatacctgc acgtaagtct ttatctacgt tactgatacg
    24661 attgttcaga cgattttctg cacctttcaa ctgattcaca ttaacagcat cagtgccttt
    24721 cacacccgga gcaacgttcg taatacgtgt ttgcgcattc ttgctacctg caatgttaag
    24781 ctcatttacg ccatcttttg caacagttga actgatagtt gtaccaccaa ctttcactga
    24841 atcaaattca agattgcttg aggttgccac ttcaacagtt gaacctttac gtgaaacaac
    24901 gatgtttttg ccacctgaaa cggccacttt accattgtta ttaacacgtt gagcaccttt
    24961 ctctgaagtt tcagctacat taccatcaac agtgagatac cagcctgtat tctgcattgc
    25021 attatacaac tggctaccgc tcacaacatc tttacttgtt gccgttacat caccatcttt
    25081 aacgttagtg atcttcgtgc ctttcgcatc aataccgcct ttagttacac ttgggccgtc
    25141 tttaatggtt aaaccattgt tatttacggt tgtgtcgcca gttgttacag aaccatcttc
    25201 cgttaaatca attgctttcg ctaattgtac ctctaatgtg tctgtaccat tcgctttcac
    25261 attgatgttg cctgatgctg acttaaagtt ttcagaagct gttttatcca caccttcacc
    25321 tttcacttta acttcagtat tcagtttctg acggttcttc acatcttcat tgttaccaga
    25381 gaagattaaa ccatcattta aggttgcaac ttgttctgtg acagttttac cgtctttatc
    25441 tttggtctca taaacgatac gagtcttacc gttctcaccc ggtaatccat ctttaccatt
    25501 tgtaccatca acaccttcag caccatcttt cactgcaata tttgcacttg caccatcttt
    25561 accgtcagcg cctttcggac cggttaagcc gatagagcca tctttaccgt ttaatacaac
    25621 agaagcgcca tctttacctg tagctccaat tgaaccatca acaccgtctt taccgtcacg
    25681 gcctgcagta attgtgccgt cacctttaat ggttacgcca tctttaccgt ctttgccagc
    25741 aataccgatt tgaccgtctt taccatcttt accaccaatg gttaagttgt ttttcaagcc
    25801 gaaggtcacg ttattacctt ctttagtaat aataatgtta ccgtctttgt tgtttagatc
    25861 aactgttgct cctggtttaa cgttgccttt gtctttacca tttgctgtta agttccaacc
    25921 tgcgttagca acttcttgca cttgatataa ctggctacca tttaccgcat ctttgctggt
    25981 tgcagaaatt tcaccgtctt gaacgttaat gattttctta tcgcctgcat tgataccggc
    26041 tttagttaca cttgggccat ctttgatagt taaaccatca ttatttaccg tagtatcacc
    26101 aatagttaca gaaccatctt tcgttaaatc aatgtctttc gctaatttaa ctgttaacgc
    26161 accattgttg tttacaacac cgatattgtt atcggacagg ttcgttaaat cagtatcacc
    26221 gcctgagatt tttaacgtct cattaagttt cttaacgatt tctttaccgt catcacctac
    26281 gaatcttaag ccatcgttca gtgttgcaac ttcctcagtt gtaccgtctg gtttctcata
    26341 aacgatacgg gttttgcttt cgccatcttt accgtcgtta ccgtcaaggc ctttagcacc
    26401 gtcttttaca gagatagttg cacttgcacc atctttaccg tcagcgcctt tcggaccggt
    26461 taagccgata gagccatctt taccgtttaa agtaacacca actgtaccat ctgcaccttt
    26521 aacaccgatt gaaccatctt tacctggacc gccaatggta aaatcgttat ttaacgtaaa
    26581 gtcaatcaca ttatcactta ctgttgtgat gatgtttttg tctttagagg tgtacttaac
    26641 agtttcacct agtttaacgt gatcagtttc accattatcc gctgcaatgc taaagccttt
    26701 ctcgataata tcgttgcttg catttacaac atcattaata ttcgcagcgt tagtaccaac
    26761 ttcttttaat tgatcgtctg ttaagtcgtt cactgaagtg attggcttac catctttacc
    26821 gttaatgccg tctttacctg ctaaaccgtc aataccgctc ttcacgttaa caatttggtt
    26881 gccgccattg tctagaccgt cttcagtaag cttaactgct ttaccatctg tgccatcttt
    26941 tggcgtgata gttacgccat tattatttac tactgttgtt ggacctttac cttcttgacc
    27001 attctctcca tcttgtggtt tgaatgtagc tgagttcaag tctttaagat ctttagctaa
    27061 ttgaacagat aatttaccat ctttgctgtt tacgccgatg ttatttgcag ttagcttatc
    27121 tttatcagct ccaccaatga tttctaaggt ttcattcaat ttcttagata ctagtgttgc
    27181 atcatcacct ttaaagtgta aaccatcatt taaagtagct acttgctctg gttcacctat
    27241 aggatcacca ttgccatctg ttggctgata ttggatacga gttacaccat ctttacctgg
    27301 taaaccatct ttaccaacaa gccctggttt gccctcagta cctttaatgg ttaaaccatc
    27361 tttaccattt gtaccgttca agccgattga accatcttta ccgttaagaa caactgcaga
    27421 accgtcttta ccgtttacac cgatagtacc atcaatacca tctttgccag ggcgacctac
    27481 agtgatagct ccatctttac catctaaagc aatagcatct ttaccgtctt taccagcaat
    27541 accaacttta cctggttcac catctttacc aacagtaata ttattcacta ggctaacttc
    27601 taatgcatgg ccaccatctt tctcaacaac gtttgtttta acattgccat caccaatgat
    27661 cttagctgtc gtacctaagt tttgcttaaa ctccttgttg ttctcatctt ttagaccaaa
    27721 cgcatctgtt gtcacctcag taacagtctc agtaacagta tttttcaagt caccgacgtt
    27781 aaccgcattg ttaagaacat cacctgctgc ctcagtaagt ttaacaggtt gaccatcttt
    27841 accttttaag ccgctatcaa cattggtgat ttggttacca ccgttgctta agccatcctc
    27901 tgttaaggta acattagatt tagttgcatc attaggatct ttcttagcaa tcgttacacc
    27961 atctttattg ataactgtag aatcaccttg tgtgccgaat gttgcactat ctaagcctgc
    28021 tagatctttt gctaacgcca cagtaatggt attgccaaca acctgtgtca tgatattttt
    28081 accagcatca aacttagccc aatcagtgtt tgttgtagca cctttaatat ccacctgcgt
    28141 atttaatttc gcatcgtgaa ctttgccatc attcgcaccg aattttaagc catcgttaag
    28201 tgttgcaact tcttctttat caccatttgg tttttcgtaa acaatacgag ttttgctttc
    28261 gccgtcttta ccgtcgttgc cgtcaagacc tttagcacct ttctcaactt taattgatgc
    28321 tttaccatct tttccatctt ttccatttac gccatcaacg ccgtggaata cgatggcttc
    28381 tggtttaatt gttacaccat ctttaccatc agcaccttta acaccaactg aaccatcttt
    28441 acctggttta ccaccaacag agatgttatc ggataagcca aaatcgatgg tattatttgt
    28501 tacggttgta acaacattct tatcggttga ggtgtactta acagtttcac ctaacttcac
    28561 attgtcttct ttagcaccac ctcctaagcc agagtgatcc gctgtaatgt taaagccagt
    28621 tttaactaaa gtgtcagcta ctgcgtaaag ttgtgaaccg ttaatcgcat ctgttgaatt
    28681 ggaagcaatt ttacccggtg caacaaactt aatttggcga gcattggttg cattacccac
    28741 actcacataa tcaccatcaa caacattttc atcgccagca aagctgctat attttaatgt
    28801 gccaacagtt gcagtatctt ctttagttgc ggttgcttca gtagagtcag aacctagaat
    28861 tacagaaccc tttgtcttaa cagtaacatt agaacctaat acgaaagtat ctttacctga
    28921 aactgtattg ttataaccta aagccgcagc acgaataccc gaaacagtac tatttacacc
    28981 ggctgcaatt gagtttttac cctttgcggt tgagttgtaa gcaatagcag ttgcataatt
    29041 accttttgat ttggcctcaa aaccaattgc tgtgccacct tcatgcgtaa tattggcacg
    29101 tgtacctact gctgtcgcat tcgccttact tacattagca ctataaccta tcgcaacaga
    29161 attattacca cttgaattag ccgtatcacc aattgccatt gcaccatctt tgctcgcgtt
    29221 agaatgcgaa ccaatactga tcactttttc tgcatgagag tttgcattcc aaccaatgct
    29281 aatagcatta cttttccagg ctttagaagc attaccaaaa gcaatcgcac cgattcctgt
    29341 tgtattcgaa tttacaccaa aggcgataga accatcacct gttgcacttg catttgttga
    29401 aaacgccaaa gtatcattcg aatttgcacg agtattcgta cccaaagcaa atgcattatt
    29461 tgctactttc gctgtatcag gattaattac ctgtcctaat tcagaaatat ttgaattctc
    29521 taatttaaag ccaccggacc aagcgttagt accaatggca aatgaatggt taccattagt
    29581 tttcgcttta gtaccgattg agaatgcatc tgttccaaat gctaaagtat tattttgccc
    29641 atcataaatt gaacgtctat tttcatgacc gtaacttcca tccactgtct gtggagtacc
    29701 actaccaatc gcaaaagaac ggtcacctag cgctgtagcc gaagcaccaa tggcgaagct
    29761 agctgtagca tttgcccaag atgttgaacc aattgcagta gaataatctg caattgcagc
    29821 agattgacgc attgcagcaa atgagttaaa tccttccgca cgtgcagagg tacctaatgc
    29881 tacagaacca atacttgcag tacgagaaaa agaaccaatt gcaatagaca atccccctcc
    29941 agaatatgaa taatcaccaa tggctatgcc tgacgctttc ggttttcctc tactttttct
    30001 gttattgtct aaagctacag cattgtgtcc aattacaatt gctgaggtag tattagactt
    30061 atacaataat ctagaatcct tctccttatt aacagagtta ttagattctt gaagcttagt
    30121 tctgtctgca taggataagc tacctgggtt aaagtagtta tatggattcg taatagaatc
    30181 tgtagccaaa ctagtgtttg tataaatatc tataccacca ttaacaactt tttttggtgc
    30241 tttttgttgt acttctattc tatcaataat caccgccgct tctgccggtg tagcagaaag
    30301 cataaaggct gccattccac tgataagggt tgctccccct agaatgctag ccgctgctaa
    30361 tttaatagta ccgcgcttat cagtagaaga agcggcttta ccttgcgatc gagcaagttc
    30421 agacacaact tccatttttt gcgtcgtttg gttaaaaata accttaaata ttttgttcat
    30481 aattttatac ctttagaatt attataaagc ttacttcgta aataattcgg caattacaac
    30541 ccaccgaata aacaacctta ctactcttaa tttagtaaga ggaaagtcat atcgataata
    30601 gtaagatttt cacttcaaaa gtgaaacaag cttttcactt ctttacaatt ctcttattat
    30661 caagataata aaattaacaa aaccccttat aaatcaaaca aatacacagt aaatatactt
    30721 aatttacaaa taaataccaa acagaaaat
//
LOCUS       DANLRW010000019        29999 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.019, whole genome shotgun sequence.
ACCESSION   DANLRW010000019 DANLRW010000000
VERSION     DANLRW010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 29999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29999
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.019"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(65..139)
                     /locus_tag="PXA71_000682"
     tRNA            complement(65..139)
                     /locus_tag="PXA71_000682"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(105..107),aa:Gln,seq:ttg)
     gene            complement(165..249)
                     /locus_tag="PXA71_000683"
     tRNA            complement(165..249)
                     /locus_tag="PXA71_000683"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(213..215),aa:Leu,seq:tag)
     gene            complement(252..328)
                     /locus_tag="PXA71_000684"
     tRNA            complement(252..328)
                     /locus_tag="PXA71_000684"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(292..294),aa:Met,seq:cat)
     gene            complement(495..1319)
                     /gene="aroE"
                     /locus_tag="PXA71_000685"
     CDS             complement(495..1319)
                     /gene="aroE"
                     /locus_tag="PXA71_000685"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDL5104820.1"
                     /translation="MNRYAVWGNPIAQSKSPRIHQLFALQTQRNIEYIANLGDETAFE
                     QQLADFFASGAKGCNITAPFKERAFKLADEFSETALLAQACNTLKRLEDGRLYADNTD
                     GAGLVSDLERLGWLQKGHKTLILGAGGATKGVLLPLLKAGLEITLYNRTQEKAVVLAE
                     KFAKFGKIQTACLSDLANQLFNLIVNATSLGLQGKYVELPESVIASANIYDMQYAPNM
                     QTPFLNYARRCGATACQDGLGMLVGQAAFAFSLWEGQFPDVEPVLAQLKLEMQTVK"
     gene            complement(1326..1880)
                     /locus_tag="PXA71_000686"
     CDS             complement(1326..1880)
                     /locus_tag="PXA71_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5/YciO/YrdC/YwlC family protein"
                     /protein_id="HDL5104821.1"
                     /translation="MNNFLEIVNQLKQEEVVAYPTEAVFGLGCNPQSEKAVRKLLVLK
                     QRPEEKGLILLASDLKYLLPYIDEARMTEQAWQRLSHIGEQAITWIVPVKNTVPSYLT
                     GKFDSIAVRLCNVPAVVQLCEASGVALTSTSANLSGEPPCRNAKEVIDQFGQDFPVLH
                     ADTLGRENPSEIRDIFSQQIFRQG"
     gene            complement(1873..2409)
                     /locus_tag="PXA71_000687"
     CDS             complement(1873..2409)
                     /locus_tag="PXA71_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HDL5104822.1"
                     /translation="MVLFKSTKQTETCPQCGSPLQIKQGKKGLFLGCSAYPECDYIKP
                     LHQAGHIIKQLDELCPECGGNLQLKQGNYGIFIGCSHYPECHFIVHEEAEVEEEFDCP
                     ECKQHKLIARKGRSGKIFYGCIGFPNCKFTLATRPINHLCEKCGCELATIKKIKGKQF
                     TICANKSCQHQTELKPNE"
     gene            complement(2419..2730)
                     /locus_tag="PXA71_000688"
     CDS             complement(2419..2730)
                     /locus_tag="PXA71_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HDL5104823.1"
                     /translation="MNREKITFFSRFEADILSGKKTITIRDKSESYFQPNQELAVFTN
                     ETDRFFANIKVLSVTPIVFDELNEQHAKQENMSLAELKQVIREIYPNDNAFFVIEFTL
                     I"
     gene            complement(2723..3199)
                     /gene="recX"
                     /locus_tag="PXA71_000689"
     CDS             complement(2723..3199)
                     /gene="recX"
                     /locus_tag="PXA71_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HDL5104824.1"
                     /translation="MTTSTTKTNKYTAVNYLLYLLSKRDYSEQELRQKLKQKEYELTE
                     IDAAIEKAQANQWQSDERFCTTFIRYRSMQGIGPRRLKQELKLKGVKDWLINQELENA
                     EVDWFELAEQIFEKKRPLVWDLKAKQKMWRFMVSRGFYNDHFSHLMALDYSSDEYE"
     gene            complement(3258..4364)
                     /gene="recA"
                     /locus_tag="PXA71_000690"
     CDS             complement(3258..4364)
                     /gene="recA"
                     /locus_tag="PXA71_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDL5104825.1"
                     /translation="MAEKKSQKNTPVKQIDPEQKEKALAAALAQIEKQFGKGSIMKLG
                     DTQALDIEAVSTGSLGLDSALGIGGLPMGRIVEIYGPESSGKTTLTLSVVAQAQKNGK
                     TCAFIDAEHALDPIYARKLGVDTDGLLISQPDNGEQALEICDALVRSGAVDVIIVDSV
                     AALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVIFINQIRMKIGVMFG
                     NPETTTGGNALKFYASVRLDIRRSGVVKDGDEVIGSETKVKIVKNKVAPPFREVQFDI
                     MYGEGIARMNELLILAESHGFINKAGAWFSYEGEKIGQGKNNAIKWLKEHPEVASKIE
                     QDIRNLLISNPTFTATPDSENADNADDEFSEEEL"
     gene            complement(4465..5085)
                     /locus_tag="PXA71_000691"
     CDS             complement(4465..5085)
                     /locus_tag="PXA71_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDL5104826.1"
                     /translation="MCRFPLFETLSIIDGKVQNLQYHQQRFEQATQEYFGCEPRFSLA
                     DILVVPEASQRGKVRCRIDYNATEFELKFFIYSPKKVERFRLVEVENWDYHLKFSDRK
                     RFDLLPILQNEEVIILNNGYVSDCSIGNLLFLKQGIWYSPQHYLLKGTQLSKLLDEGK
                     VVLAKIAKQDLHQYEKIMLINALNPFEEPRALPCSQIYFCDLDRKS"
     gene            complement(5063..6037)
                     /locus_tag="PXA71_000692"
     CDS             complement(5063..6037)
                     /locus_tag="PXA71_000692"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HDL5104827.1"
                     /translation="MQDFIHQANHYGQAKRPFFFLIDFEQQKPLIFPLEQAHASGLFF
                     EFFCKSNLEKPVEKPTKAFELSANPIPFSEYQTGFELVKKEIQAGNSYLLNLSYPTAI
                     ETNYSLAEIFAASKAKYKCYLQGRFVCFSPECFVRIENNRIFSYPMKGTINANEENAE
                     QKLMASEKEFTEHNTIVDLIRNDLALVAKNIEVTKYRYVEKVETHRGAILQTSSEICG
                     ELGENWQENIGSILAKLLPAGSISGAPKEKTVSIIQQAELGKRGYYTGIFGYFDGESL
                     ESAVAIRYIAQTSNGLVFHSGGGITSQSVLTDEYNELLEKVYVPISAI"
     gene            6147..7754
                     /gene="rmuC"
                     /locus_tag="PXA71_000693"
     CDS             6147..7754
                     /gene="rmuC"
                     /locus_tag="PXA71_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HDL5104828.1"
                     /translation="MHFQEIGIYIALAVCVLVGVYLFFLKSRYQRNAYELSQDLGKIT
                     ENFEQIQQKYEVLAQEKNQLEQWAIQQQTKYEAVSERLNERDGQLQRFQQKIELAEQQ
                     ENQLERYINELKERVGSSQAKAESLEEQLQFSQSSLSTKERENQALFSRLNEVQNELT
                     ELRTTLSEKQANFEAQQRNFIEVKQQLNVEFQHLAQQILDEKSKRFSETNQSSLEALL
                     KPFKEQIEGFQKRVNEVHSESLKGSANLEAEIKRVLQIGVSMSEEAQNLATALKGNNK
                     IAGNWGEVQLESALQSAGLLAGEHYQAQESFRDEEGRRFAPDFVVHLPDQKHLIIDSK
                     VSLVAYDQAVRSEENFAISQALDEHCRSLRNHIEGLSKKNYSALLGIKSPDFVLMFIP
                     IEPAYIEAMKHDPQLFNFGYERNVILVSHTTLMPILRTVANLWRIERGNSEAREISEK
                     AGEIYNQVCAVADRLAKLGNTLNTANNQYNQTVTSLVGRQGLLGKVERFQHLSSKASQ
                     IVPQVELIENEVDTIKLEMVSRELLEE"
     gene            7817..8401
                     /locus_tag="PXA71_000694"
     CDS             7817..8401
                     /locus_tag="PXA71_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component II"
                     /protein_id="HDL5104829.1"
                     /translation="MLKKLLIIDNHDSFTFNLVDLLRKLDVPAKVVLVEELDLNEVEH
                     FSHILISPGPDVPRAYLQTFAMLERYHQTKSILGVCLGHQTICEFFGGKLYNLNDVRH
                     GQQRTLTQIEPNPIFKGLPKQLKVGLYHSWGILQNSLQNTPLVPTAVCDQNVLMAFKH
                     QHLPIFGVQFHPESFITEFGQQMLANWLEITQDF"
     gene            8498..9580
                     /gene="prfA"
                     /locus_tag="PXA71_000695"
     CDS             8498..9580
                     /gene="prfA"
                     /locus_tag="PXA71_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDL5104830.1"
                     /translation="MKDSIINKLESLSERHEELQALLGDASIISDQDKFRAYSKEYSQ
                     LEEVVGTFNRWKKLNNDIEEAQLLLDDPDMKDMAAEEIAENKAEIENLEQHLQILLLP
                     KDPNDEYNAFLEIRAGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYK
                     EIIVKISGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEIN
                     PSDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLAS
                     RIVQVEQERQAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMN
                     GKIDELIQPIITEYQADQLAALSEQN"
     gene            9692..10294
                     /locus_tag="PXA71_000696"
     CDS             9692..10294
                     /locus_tag="PXA71_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104831.1"
                     /translation="MRKLGLLAVFTLVLSACSNSTKIEQTILSKQDIVGSWVCAIKYD
                     DLKVSTLDFSEFKANGEMTNFGDISDENFEPIKFTYVTGDKGKWDLKGNRLVIDYDLS
                     ERKVKRTTPKKFLEFLKQEERKASKTAKKLLKYEQGIFNILSDQKNTENSKIILDILK
                     FGHSRMAIQQNMGDKVYSGGCVTADKAEEYLDILKNRNSK"
     gene            10294..11160
                     /gene="prmC"
                     /locus_tag="PXA71_000697"
     CDS             10294..11160
                     /gene="prmC"
                     /locus_tag="PXA71_000697"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL5104832.1"
                     /translation="MDYREWLTFAEQKLLENSGADPYLNAKFDANLLLQAVTKRSKSA
                     IFAFSETLLSESELAELAEKLARRAKGEPMAYILGYREFWSLPLKVSPATLIPRPDTE
                     RLVELALEYANKRLGNQKMLQILDLGTGTGAIALALASELGEKAQIIGVDFQNEAVQL
                     AEENRRNLGLNQVTFLQSDWFSSLANQQFDLIVSNPPYIDESDENLTVGDVRFEPLTA
                     LVADNKGLSDLQKIIENAPLHLKPQGALMLEHGWKQGNLVRDLFDLHLWEQVETAQDY
                     AGNDRVTKAILK"
     gene            11169..12035
                     /locus_tag="PXA71_000698"
     CDS             11169..12035
                     /locus_tag="PXA71_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB1 family protein"
                     /protein_id="HDL5104833.1"
                     /translation="MDDIIEELLKELEDPKVTISETELKKFLYREILRLTTLIDKNVS
                     EQQVFGQMSALVKKARYNVNGEGDEERINQLLHLVYREWGFHCYYEDYFHTENLLLNQ
                     VIRKRRGMPVSLGAVALYLSAVLDLPLYPVNFPTQLVLRAEIHQPNGATKVRFINPWN
                     GEFLTIEMLNKWLEGEMGFGVEVTPDLLRRAEPQELLERVETVFKMALTREGKYEETL
                     RLIEYRLAFSPEDPYEIRDRGMVLASMDCYQAALEDINYFIDQCPEDPSAEILKMEVK
                     GLQQKSQESVVH"
     gene            12125..12979
                     /gene="kdsA"
                     /locus_tag="PXA71_000699"
     CDS             12125..12979
                     /gene="kdsA"
                     /locus_tag="PXA71_000699"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HDL5104834.1"
                     /translation="MTDKIVKVGNIEVANHKPFTLFGGMNVLESRDMALRVCEQYVEV
                     TQKLNVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKQTFGVNIITDVHEIYQC
                     KPVAEVVDVIQLPAFLARQTDLVEAMARTGAVINVKKPQFLSPGQMGNIVEKIAECGN
                     DQVILCDRGTNFGYDNLVVDMLGFGIMKKVSKGCPVIFDVTHSLQCRDPFGAASGGRR
                     DQVTELARSGMAIGLAGLFLEAHPDPNSAKCDGPSALPLSKLEAFVSQMKAIDELVKS
                     FEEIDTSK"
     gene            13200..14147
                     /locus_tag="PXA71_000700"
     CDS             13200..14147
                     /locus_tag="PXA71_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase"
                     /protein_id="HDL5104835.1"
                     /translation="MLNIVFLDRTGIPATHDIPRPNFPHTWTEYATTSADQTFERVKE
                     ADIIITSKVLLQRDLLAKLPKLKLIAITATGTNNVDLAAAKELGIAVKNVTGYSSVTV
                     PEHVIGMIYSLKHRLADYHRDLITSDRWATCGQFCYVDYPIHDVRGSTLGIFGKGNIG
                     AEVARLAQAVGMQVIFAEHQGATEIREGYTAFEEVFKQADIISLHCPLTEQTQNLINA
                     ETLALMKPTAYIINTGRGPLIDEQALLEALEQGKIAGAALDVLVKEPPEKDNPLMLAA
                     KRLPNLLITPHVAWASDSAVTTLVNKVTQNMEEFVATGM"
     gene            14245..15417
                     /locus_tag="PXA71_000701"
     CDS             14245..15417
                     /locus_tag="PXA71_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit"
                     /protein_id="HDL5104836.1"
                     /translation="MNLTPFFIAFRYFRSKSADRFGRLVTNLASLGIVLGVMALVIVL
                     SVMNGLENMQKTNLLSTLPHAIITPQEGHFAKGEKLALPEFAKQSVVINRANVIIQSS
                     QGINAGQLIGVENATDDPLLVAENIPALLPSGEFKVVIGSRLANKLNVTVGDKLRLMI
                     TENSQYTPLGRVPVQRLFEISGVYQSNREASEFTLFANLADVGRLLRISEDQVQGVRL
                     YLQDPFQVTELSQYFDAERYQISDWREQKGEFFQAVKMEKNMMGLLISLIIVVAISNI
                     VTSLSLMVVDKQGEIAILQTQGLTKKQVMQIFVFQGAIVGVIGSIIGGLLGVLIAYNL
                     DQIILLLNPSIHLPTLISGTQIAVIVGVSMLLSLLCTLYPAYRASKIEPAQALRYE"
     gene            15434..16117
                     /gene="lolD"
                     /locus_tag="PXA71_000702"
     CDS             15434..16117
                     /gene="lolD"
                     /locus_tag="PXA71_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HDL5104837.1"
                     /translation="MTELLRCEHISKFYDEGEQKVQVLKEVSFSMNEGELVAIVGSSG
                     SGKSTLLHTLGGLDQPSTGEVWIRGQSLQQLSSDKLALLRNQNLGFVYQFHHLMADFT
                     ALENVMMPMLIGKQNKTEAANRAEKMLQAVGLAHRMTHRPSALSGGERQRVAIARALV
                     NNPALVLADEPTGNLDQKTTESIFELIQQLNQEQNIAFLLVTHDLNLANKLSRSLVMR
                     DGVLSEGSL"
     gene            16114..17379
                     /gene="lolE"
                     /locus_tag="PXA71_000703"
     CDS             16114..17379
                     /gene="lolE"
                     /locus_tag="PXA71_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HDL5104838.1"
                     /translation="MSTPFFISWRYQRGKQKNKLVSLIALFSNIGIALGVAVLIIGLS
                     AMNGFERELNNRVLSVVPHAELVSFQGNQPQPIFDSKKLEALIKKSQNVTASSPFVSF
                     TALIENGAQLKIAQVRGVDPKKQDQASQLSQFIPPEQWQAFNQQFQADEDGLILGAGI
                     AKALEVEAGDEVTLLIPQPTEDGKLAQPLRFNLNVTGILRLDGQLDHSYALIPLNKAQ
                     ELMEYQANEVSGLEISLANPFDVQQLEMPQLNGYTQPLYLNTWIDKFGYMYNDIQLIR
                     TVMYIAMVLVIGVACFNIISTLIMAVKDKQGDIAILRTLGANNGFIRRIFLWYGLISG
                     MKGALFGLILGVILSLNLTAIIKAIEAFFEVKLLSDGVYFVDFLPSELHWQDVVYVLA
                     ATIILSLFASLYPANRAAKLEPAKVLSGH"
     gene            complement(17454..19385)
                     /gene="thrS"
                     /locus_tag="PXA71_000704"
     CDS             complement(17454..19385)
                     /gene="thrS"
                     /locus_tag="PXA71_000704"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDL5104839.1"
                     /translation="MPIITLPDGSQRSFDNPVSVMEVAQSIGAGLAKATIAGRVNGER
                     RDASDIISQDSTLEIITAKDEDGLEIIRHSTAHLLGHSIKQLFPDVKMAIGPTIENGF
                     YYDIDLDRSLTQEDLDALEKRMLELAKTNYDVVKRPVSWQEARDTFEKRGEPYKMAIL
                     DENIERTATPALYHHEEYIDMCRGPHVPNMRFCHHFKLQKVAGAYWRGDSKNKMLQRI
                     YGTAWADKKQLAEYLQRLEEAAKRDHRRIGKALDLYHMQEEAPGMVFWHNDGWTIFRE
                     LETFVRTKLKEYDYQEVKGPFMMDRVLWEKTGHWQNYADLMFTTQSENREYAIKPMNC
                     PGHVQIFNQGLKSYRDLPIRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IESEVISCIKMVYDIYSTFGFTNIAVKLSTRPENRIGDDAMWDRAEKGLANALRNNGL
                     EYEIQEGEGAFYGPKIEFALRDCLGREWQCGTVQLDFALPGRLAASYVAEDNGRRTPV
                     MIHRAILGSIERFIGIITEEYAGFFPTWLAPTQAVVMNITDSQADYVQQVVKQLSDAG
                     IRVKADLRNEKVGFKVREHTLRRVPYMLVCGDKEIAEGKVSVRTRKGADLGTYLVSDL
                     VEILKNQIKARELKLLGEE"
     gene            complement(19552..20901)
                     /locus_tag="PXA71_000705"
     CDS             complement(19552..20901)
                     /locus_tag="PXA71_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5104840.1"
                     /translation="MNSTKFYSLYSGIFFLFFGYGLFLNSAGIKLAEMGITDIIIGLL
                     NAAFFIGAALSTIFAHRIVSSVGHIRSFSVFCAVFAIAALGHIMIDTLWIWGVLRIIL
                     GFCHYSLLLLVESWLSEKTNVDTRGKVLATYNIIFYLAFILGVSLLSLELSSRNIFIL
                     STILVVMSMIPIALTKMVQPDIPARERISIPKLFAISPLALATSFISGMLVNGFFTMA
                     SVFLLKFSFSLSEISLYLMISMIGGFISQMPMAILSNRIGRRNAILACSVIATLTALA
                     GLFAIFQENLTAWGQYIIAFFFGCSLFSLYALSIARANDELPNNMNTVEVSRGLLFCY
                     GVGALVAPPLIGFAMSLSAEYGFYALFGLFSLSLFICAFRTKSIPKAERAEMQYATPI
                     ATASPLEEIEVVEDALIPFDEEAVQEYQAQLEILEQDPQTENENIELDEGAAENSKV"
     gene            complement(21176..21667)
                     /locus_tag="PXA71_000706"
     CDS             complement(21176..21667)
                     /locus_tag="PXA71_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HDL5104841.1"
                     /translation="MFTTQLIQTKRWLEANSITTFWLKTFIGATLLAIFAQISVPMYP
                     VPITGQTLALTVVGFAMGRKAATAAVLLYLFEGAIGLPVFAGGASGFHHFFGPTGGYL
                     LGYIPTAYFLGYYSDKGVLNSFWKSLFVALIASVITFAFGLAQLSLYQKAQYYKRAYI
                     HLF"
     gene            21748..22515
                     /locus_tag="PXA71_000707"
     CDS             21748..22515
                     /locus_tag="PXA71_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--protein ligase"
                     /protein_id="HDL5104842.1"
                     /translation="MVKPVYIYCDEGSSEIGVQSLLLAVKQHLQRPAYLINAKQIIQS
                     KFSDGCLLIMPGGADLPYCKKLNGEGNRRIRQFIEQGGAYLGICAGAYYGCAELNFVG
                     RDYSVNGNRELALFNGIAGIAKGSLPQFTNGQLYDKNIGSKAIVEVTLAEGGKMPFYY
                     HGGCCFEPNSTTVIYNPLAYYPDGSVAMIEGELGRGYYLLSGVHFELQAVVYWQKIVN
                     CCENLDIKTQEEAICSNFNVNYGSQIWQHLKQRLNQA"
     gene            complement(22506..23300)
                     /locus_tag="PXA71_000708"
     CDS             complement(22506..23300)
                     /locus_tag="PXA71_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDL5104843.1"
                     /translation="MRFFDTHTHLDYLAESLNLSIPELVENAKQHQVECILIVAVFAK
                     NFAKVTACAKQKPENLVYGLGLHPLYIQQHQQQDLILLENLLSQQDPQCTAIAEIGLE
                     KAVSEVSTPELWKKQCEFLEAQLSLAKKFNLPVNLHSRKSHDQLFVFLKKAQLTKTGV
                     VHGFAGSYEQAKRFVDLGYKIGVGGTITYERANKTREAIRKLPLESLLLETDSPDMPV
                     FGFQGQPNRPERLLVTFNSLCELRTESPNLIAETIWQNSERLFFYA"
     gene            complement(23361..24947)
                     /locus_tag="PXA71_000709"
     CDS             complement(23361..24947)
                     /locus_tag="PXA71_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005667512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HDL5104844.1"
                     /translation="MLWFFFCVAVLVLGYFTYGKIIEKIFVINPKRATPAYAMNDGVD
                     YMPMSKTKIWLIQLLNIAGTGPIFGPILGALYGPVAMLWIVIGCIFAGAVHDYFCGML
                     SIRNGGATMPNLAGKFLGRPVKLFINVMALILLLLVGVVFVASPAQLLSTITMDIAGA
                     TQSAMELGDVEAIKESVASGGVTVWGMDKATVISVWTLIIFAYYILATLLPVDKIIGR
                     IYPFFGALLLFMSVGMVYGLVSAHLSATDPIDFFRTVNADGQGLTWEKFTQNFQVKGD
                     VPIWPLLFLTISCGALSGFHATQTPLMARCAQNEKEGRFIFYGAMITEGVIALVWCAV
                     GLSFYENPQALQDAISAGSPSKVVYDSSLHFLGFIGGIFAVLGVVVLPITSGDTAFRA
                     ARLQLAEIFGLEQRTLVKRLYIAVPLFVLGFIVSKVDFSVLWRYFTWANQMTAMVMLW
                     TAAGYLYRYKKFHWVCSIPAWFITTVCATYLANNKIGFGLDYELSVYIGFAITVVCVI
                     CFFAFLKPSEARDEDAYVTN"
     gene            complement(25133..26986)
                     /gene="dxs"
                     /locus_tag="PXA71_000710"
     CDS             complement(25133..26986)
                     /gene="dxs"
                     /locus_tag="PXA71_000710"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDL5104845.1"
                     /translation="MEKKYPLLSEINSPEDLRLLSKDQLQTVVDELRAYLLESVSQTS
                     GHLASGLGVVELTVALHYVYQTPFDQLIWDVGHQAYPHKILTGRRDQMHTIRQKDGIH
                     PFPWREESPYDVLSVGHSSTSISAGLGIAVAAEKENAGRKTVCVIGDGAITAGMAFEA
                     LNHAGALHTDMLVILNDNEMSISENVGALNNHLARIFSGSLYTSVRDGSKKILDKVPT
                     IKNFMKKSEEHMKGVIFSPESTLFEELGFNYIGPIDGHNIDELVKTLSNMRELKGPQF
                     LHIRTKKGKGYTPAENDPIGYHGVPKFDPTAAELPKSKAAPTYSNIFGDWLCEMAERD
                     PKIIGITPAMREGSGMVEFSKRFPEQYFDVAIAEQHAVTFGAGLAIAGYKPVVAIYSS
                     FLQRAYDQLIHDVAIQNLPVIFAIDRAGIVGADGQTHQGAFDLSFMRCIPNMTIMAPS
                     DENEMRKMLYTAYTMNTPSAIRYPRGNAKGVKLEPMQRLEVGKGNIIREGKKVAILNF
                     GALLDEAKIVAEKHNYTLVDMRFIKPLDEALLQKVADSHELLVTLEENAIQGGAGSFV
                     NEYLQNIGKIKPLVMLGIPDFFVPQSTQAEAYADLGLDAQGIEAKIQKFDI"
     gene            complement(27031..27843)
                     /gene="suhB"
                     /locus_tag="PXA71_000711"
     CDS             complement(27031..27843)
                     /gene="suhB"
                     /locus_tag="PXA71_000711"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HDL5104846.1"
                     /translation="MNPMLNIAIRAARKAGNIIAKGYEQSPQDTQVLQKNTNDYVTEI
                     DKAAEAAIIDVIRKSYPEHSIVTEESGVLNGSNENVQWVIDPLDGTTNFVKRLPHFAV
                     SIAVRENGRTTVGVVYDPIRNELFTAVRGEGAKLNEFRLRIDAERRDLKGTVIATGFP
                     FKVIRHRDAHLNMLEGLMNNGVADFRRTGSAALDLAYVAAGRVDGFFEIGLKPWDFAA
                     GELIAREAGAIVTNFVGGTDYLKTGNLVVGNGRVVKEILNSIQPTLTEELKA"
     gene            28024..29058
                     /locus_tag="PXA71_000712"
     CDS             28024..29058
                     /locus_tag="PXA71_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA methyltransferase"
                     /protein_id="HDL5104847.1"
                     /translation="MQFKENNQPRFKHREERRSDECSPRFSDKGKMRGNEGKSDRPHK
                     LHFKRDEAYSRSEQIYPAEGKKASGEGSVQIWVKGGNSSVKEKKNGPLSPRAPEKIKK
                     NRLEEMKVYGENACISLFQQRPESIVRLWATVEGAKKLGDLMSYLAQHKKAYHVIDRE
                     EMERVTGTEHHGDMCLLVKKTASFVLEGYLQVPKKQDCLVLLDGVNNAQNVGGIIRTC
                     AFYGVKGIITENVDSLNSSAAARVAEGGLEFVRALETKNKHIALVQLRQAGYQIVHLT
                     RHKQAPSLTKIKLAEKVVFVLSEIPASDVAYAEDTTIQLSFNNPLNSGLNVAVNAGIL
                     LNQWYQTHIL"
     gene            29068..29952
                     /locus_tag="PXA71_000713"
     CDS             29068..29952
                     /locus_tag="PXA71_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HDL5104848.1"
                     /translation="MNQQKPFEVIAIVGTPRHDSAFETHLAVYNWLKDRDYQILVETE
                     VATQLQLKESYSLDQIGQRAELVIVIGGDGNMLGIARALAKYRVPLIGINRGNLGFLT
                     DIAPQTAFEQLYSCLVKNEYVIEERFLLEAFIERNGKIIAANNALNEIVVHPTQVARI
                     IEFEVYIDGKFAFSQRADGLIVATPTGSTAYSLSAGGPILTPNMNAMALVPMHPHTLS
                     SRPLVVDGDSQISLRFAKYNTPDLEVICDGQVNMHFTPEDRVLVRKSPDKLQLLHLKD
                     YSYFTVLGSKLGWASKLF"
BASE COUNT         9016 a         6112 c         6337 g         8534 t
ORIGIN      
        1 cgatacccca aaagaaaaaa ctaacttacg ttagcttata tagatttgaa tgtttgaaat
       61 taagtggctg gggtactagg attcgaacct agggatgccg agatcaaaac ccggtgcctt
      121 accgcttggc gataccccaa cactaatttt tgttaatcga taaatggtgc gggacgaggg
      181 acttgaaccc acacacctcg cggcgccaga acctaaatct ggtgcgtcta ccaatttcgc
      241 cagtcccgca atggtggcta cagcgagatt cgaacttgcg accccaacat tatgagtgtt
      301 gtgctctaac cagctgagct atgtagccat ttgcgttcac catatcggtc aacggagtgc
      361 attatgctga ttttagggct ttccgtcaaa tacttttttt aaaaaatttg aatttttgat
      421 tcgcttgtat agttattcgt cgttttggct taaatctagc attttttgtt tataaaataa
      481 tagcttatat tctgctattt caccgtttgc atttctaatt ttaattgagc cagtacaggc
      541 tcaacatcgg ggaattgccc ttcccacaaa gaaaacgcaa acgctgcctg tccaaccaac
      601 attcctaatc cgtcttggca cgctgttgct ccacaacgcc ttgcataatt gagaaaagga
      661 gtttgcatat tgggggcata ttgcatatcg taaatattcg ccgatgctat aacagattca
      721 ggcaattcaa catatttgcc ttgcagaccg agagaggtgg cattgacgat taaattaaac
      781 agttggtttg ccaaatcgct taaacaagcg gtctgaattt tgccaaattt tgcaaatttt
      841 tcggctaaaa cgaccgcttt ctcctgcgtg cggttatata gagtaatctc taaccccgct
      901 ttaagtaacg gaagtaatac gcctttggtt gctccacctg ctccaagaat taaggtttta
      961 tgcccttttt gtaaccaacc tagccgttcc aaatcagaaa ctaaaccggc cccgtcggta
     1021 ttatcggcat ataaccgtcc atcttctaag cgtttaagcg tattacacgc ctgtgccaac
     1081 aaagcggttt cgctaaattc atctgccaat ttaaaggctc tttctttaaa aggggcggtg
     1141 atgttgcaac cttttgctcc agaagcgaaa aaatcggcta attgttgctc aaaagccgtt
     1201 tcatctccta agttagcgat atattcaatg ttgcgttggg tttgtaaagc aaagagttga
     1261 tgaatacggg gggatttact ttgagcaatc gggttgcccc acacggcata tcggttcatt
     1321 tcggcttatc cttgtctaaa aatctgttgg ctgaaaatat ctcgaatttc ggaagggttt
     1381 tctctaccta gcgtgtctgc gtgtaataca ggaaaatctt gaccaaactg atcgatgact
     1441 tcttttgcat tgcggcaagg tggttctccg ctcaaattgg cactggtaga ggtcaacgca
     1501 acgccgcttg cctcacacaa ctgaaccacc gccggcacat tacataaacg tacggcaata
     1561 gaatcaaatt tgccggtgag gtaacttggc acagtatttt taaccggtac gatccaagta
     1621 attgcctgct cgccaatatg gcttaggcgt tgccaagcct gttccgtcat tcgagcttca
     1681 tcaatatagg gaagaagata ctttaaatca gaagccagta aaattagccc tttttcctca
     1741 gggcgttgtt ttaatacgag taatttcctt accgcttttt cactttgtgg attgcagcct
     1801 aagccaaaaa ccgcttcggt tgggtaagct acaacttctt cttgctttaa ttgattaact
     1861 atttctaaaa aattattcat tcggttttaa ttctgtttgg tgctggcaac ttttgttagc
     1921 acaaatggtg aattgcttgc ccttaatttt tttgattgta gcgagttcac aaccacattt
     1981 ttcacacaag tggttaatcg gtcgagttgc taatgtaaat ttgcaattag ggaagcctat
     2041 acaaccataa aatattttgc ctgaacgccc ttttctagca atcagtttat gttgcttgca
     2101 ttcagggcaa tcaaactctt cttcaacctc agcttcttcg tgtacgatga agtggcattc
     2161 agggtaatgg ctacagccga taaaaatacc ataattgcct tgttttaatt ggaggtttcc
     2221 gccacattca gggcaaagtt catctaattg cttaataata tgaccggctt gatgtaatgg
     2281 cttaatataa tcacattcag ggtaagctga acaacccaaa aataaccctt ttttgccctg
     2341 cttaatttgc aacggcgagc cacattgtgg gcaagtttcg gtctgtttgg ttgatttgaa
     2401 aagtaccata ttgatttgct aaataagcgt aaattcaatc acaaaaaacg cattgtcatt
     2461 cggataaatc tcccgaataa cttgtttcaa ttcggctaag ctcatatttt cttgtttagc
     2521 gtgttgctcg tttaattcat caaacactat aggtgttacc gatagcactt taatattggc
     2581 gaaaaatcta tcggtttcat tagtaaaaac cgctaattct tggtttggtt gaaaataaga
     2641 ttctgacttg tctcgaatcg taattgtttt tttaccgctt aaaatatcgg cttcaaatcg
     2701 gctgaaaaag gtaattttct ctctattcat attcatcgct actgtaatcc agagccatta
     2761 aatgactaaa atgatcgtta taaaaaccac ggctaaccat aaatcgccac attttctgct
     2821 ttgctttcag atcccataca agcggtcgtt ttttctcaaa aatttgctca gctaattcaa
     2881 accaatccac ttcggcgttt tctaattctt ggttaattaa ccaatctttt acccctttaa
     2941 gttttagctc ttgctttaaa cggcgaggcc caatgccttg cattgaacga taacggataa
     3001 aagtggtaca aaagcgttca tcactttgcc actgattcgc ttgagctttt tcaatcgctg
     3061 catcaatctc cgtgagttca tactcttttt gctttagttt ttgccgaagc tcttgctcgc
     3121 tgtaatcacg ctttgaaagt aaatatagca gataattaac cgctgtgtat ttatttgttt
     3181 tagtagtaga tgttgtcatt tatcggttat aaataaaaat gcgattttca cgttgagcga
     3241 aaaccgcata aatttaatta gagttcttct tcactaaatt catcatctgc attgtctgca
     3301 ttttcagaat ctggagtagc cgtaaaagtt gggtttgaaa tgagtagatt tcgaatatct
     3361 tgctcaattt tactcgccac ttcagggtgt tcttttaacc atttgatggc attattttta
     3421 ccctgaccga ttttctcccc ttcataagag aaccaagccc ctgctttatt aatgaagccg
     3481 tgagattccg ctaaaatgag taattcattc atacgggcaa tgccctcacc gtacataata
     3541 tcaaattgga cttcacggaa cggtggagca accttgtttt tcacaatttt cacttttgtt
     3601 tcgctaccga taacctcatc accgtctttt actacgcctg aacgacgaat atctaaacgt
     3661 actgaagcat agaatttaag ggcattacca ccagttgtgg tttcagggtt accgaacatt
     3721 actccaattt tcatacgaat ttggttaatg aaaatcacca agcagttggt cgctttgata
     3781 tttgcggtta atttacgcaa tgcttgtgac attaaacgag cttgtaagcc catatgggaa
     3841 tcacccatat cgccttcaat ctctgctttt ggtgtaagtg ccgcaacaga gtccacaata
     3901 attacatcaa ccgcaccgga acgaactaac gcatcacaaa tttctaatgc ttgttcgcca
     3961 ttatccggtt gtgaaattaa taatccatct gtatctaccc ctaacttacg ggcgtaaata
     4021 ggatcaagtg cgtgttcggc atcaataaag gcacaagttt taccattttt ttgggcttga
     4081 gccaccacag ataaagttaa tgtagtttta cctgaagact ccggtccata aatttccaca
     4141 atacgaccca ttggtaaacc accaatgcct aatgctgagt ctaaaccaag agaaccggtt
     4201 gaaactgctt caatatcaag ggcttgagta tcgcctaact tcataattga gcctttgcca
     4261 aattgctttt caatttgagc taatgcggct gccaacgctt tttctttttg ttccggatca
     4321 atctgtttaa ccggagtgtt cttttgactt tttttctctg ccatattcta tcctttgtaa
     4381 acttttatct aaaagcaacc gcttgttgct gcaaaataac tgtatattat tatagtattt
     4441 acttatccag ttgcaagcat ttttttagga ttttcgatca agatcacaaa aataaatttg
     4501 cgagcaaggc aatgcccttg gttcctcaaa gggattaaga gcattaatca acataatttt
     4561 ttcatattga tgcaaatctt gcttggctat tttggctaaa acgactttcc cttcatcaag
     4621 caatttacta agctgagtgc ctttgagcaa ataatgttgc gggctatacc agattccttg
     4681 ttttaggaac agtaaattgc cgatggagca atcactgacg tagccattat tgagaataat
     4741 cacctcttca ttttgtaaaa tagggagcaa atcaaaccgc ttgcggtcgc taaatttgag
     4801 gtgataatcc caattttcca cctcaaccaa gcgaaaacgt tctacttttt tgggcgaata
     4861 gataaaaaat ttcagctcaa attctgttgc gttgtaatct attcggcaac gtactttgcc
     4921 ccgttgagaa gcctctggca caactaaaat atcagcaagg ctaaaacgag gttcacagcc
     4981 aaaatattct tgtgttgctt gctcaaaacg ttgttgatga tactgtaagt tctgaacttt
     5041 gccgtcaata atcgaaaggg tttcaaatag cggaaatcgg cacatagact ttctctaaca
     5101 gttcattata ttcatcagtt aacacacttt gtgaggtaat gccaccacca ctatgaaaca
     5161 caagcccgtt tgaggtttga gcaatgtaac gaattgccac cgcactttct aagctctcgc
     5221 catcaaaata accaaaaata ccggtgtagt aaccccgttt tcctaattct gcttgctgaa
     5281 taatcgaaac cgttttctct ttcggtgcac cgctaatgga gccggcaggt agtaattttg
     5341 ccaatatcga accgatattt tcttgccaat tttcacctaa ttcgccacag atctcggaac
     5401 ttgtctgcaa aattgcccct cgatgggttt ctactttttc cacataacgg tatttagtaa
     5461 cttcaatatt tttcgccacc aacgccaagt catttcggat caaatccaca atggtattat
     5521 gttcggtaaa ctctttttcc gaagccatta atttctgctc ggcattctcc tcatttgcat
     5581 taattgtgcc tttcatcggg taggaaaaaa tgcggttatt ttcaattcgc acaaagcatt
     5641 caggggaaaa acagacgaac ctgccttgca aataacattt atattttgct ttgctggcgg
     5701 caaaaatttc cgccaatgaa taattggttt caatggcagt cgggtagctc aaattcagca
     5761 agtagctatt gccggcttga atttcctttt tcactaattc aaacccggtt tggtattcgc
     5821 taaacggaat cggatttgcc gataattcaa aagctttagt cggtttttca accggctttt
     5881 cgagattcga tttgcaaaaa aattcaaaaa aaagaccgct tgcgtgagcc tgttctagcg
     5941 gaaaaataag tggcttttgc tgctcaaaat caattaaaaa gaaaaaaggg cgttttgctt
     6001 gcccgtagtg attggcttgg tgaataaaat cttgcataga aaacacaatg gctgaaattg
     6061 gctgaatcat caaaagctct gttataatgc aaagcaatag atttgaaaag cattttttaa
     6121 aaaaggtttt accgatgaac aacaccattc attttcaaga aattgggatc tacatcgccc
     6181 ttgccgtttg tgtgctggta ggcgtttatc tctttttctt gaaatcccgt tatcagcgaa
     6241 atgcctacga attaagccaa gatcttggca aaatcaccga aaattttgaa caaattcagc
     6301 aaaaatatga ggtgttggct caagaaaaaa atcagcttga gcagtgggca attcaacaac
     6361 agaccaaata tgaagcagtg agtgaacgtt taaacgagcg agatgggcaa ttgcaacgat
     6421 tccaacaaaa aatcgaactt gccgaacagc aagaaaacca gctggaacgc tatattaatg
     6481 agctaaaaga acgtgtgggt tcttcccaag caaaggcaga aagtttggaa gaacagctac
     6541 aatttagcca aagttcactc tcaactaaag agcgggaaaa tcaagcgtta tttagccgtt
     6601 taaacgaggt acaaaacgag ctgaccgaac tgcgtactac gctttcggaa aaacaggcaa
     6661 attttgaagc acaacaacgc aattttattg aggtaaaaca acagcttaat gtggaatttc
     6721 aacatttggc acaacaaatt cttgacgaaa aaagcaagcg ttttagcgaa accaatcaaa
     6781 gctcgttaga agctctactg aagccgttca aagagcaaat tgaaggcttt caaaaacggg
     6841 tgaatgaggt acatagtgag tcgctcaaag gctcggcaaa tttagaggct gaaattaagc
     6901 gggtgctaca aattggcgtt tcaatgtcgg aagaggcaca aaatctggca acggcattaa
     6961 aaggcaataa taaaattgcc ggcaactggg gtgaagtaca gcttgaaagt gccttacaat
     7021 ctgccggttt actcgcaggc gagcattacc aagcccaaga gagttttcgt gatgaagagg
     7081 ggcgacgttt tgcccccgat tttgtggtgc atttgccgga tcaaaaacat ctgattattg
     7141 acagtaaagt ctcgttagta gcgtacgatc aagcggtcag atcagaagaa aattttgcaa
     7201 tttctcaagc cttagacgaa cattgccgtt cgctacgcaa tcatattgag ggattgtcta
     7261 agaagaacta cagtgcatta ttaggcatta aaagcccgga ttttgtactg atgtttattc
     7321 cgatagaacc ggcttatatt gaagcgatga agcacgatcc gcaactgttt aactttggct
     7381 atgaacgcaa tgtgattttg gtttctcaca ccaccttaat gccgatttta cgcacggtcg
     7441 ccaatttatg gcggattgaa cgaggcaaca gcgaggctcg tgaaatcagc gaaaaagccg
     7501 gcgaaattta caaccaagtg tgtgcggttg ccgatcggtt agctaaatta ggtaacacgc
     7561 taaataccgc aaataatcaa tacaatcaaa ccgttacctc gttagtggga cggcaaggct
     7621 tactgggcaa agtggaacga ttccaacatc tttcaagcaa agcaagccaa attgtgccgc
     7681 aggttgagct gattgaaaat gaggtggata ctattaaatt ggaaatggta tcgagagaat
     7741 tattggaaga atagtcaaat ctctttattc cctacaaaaa tatggggtga tttgaaatac
     7801 taaagaaaat aataaaatgc taaaaaaact attaatcatc gacaaccacg actcttttac
     7861 cttcaacttg gtggatttac tccgtaagct tgatgtgccg gcgaaagtgg tgctggttga
     7921 agagcttgac ctcaatgagg tggagcattt tagccatatt ttgatttcgc ccggccctga
     7981 tgtgccgaga gcctatctac aaacctttgc gatgttggag cgttatcatc aaaccaaatc
     8041 aattctaggc gtttgcttgg ggcatcaaac gatttgcgag ttttttggcg gcaagttgta
     8101 taacctaaac gatgttagac acgggcagca acgcacgctc actcaaattg agcctaaccc
     8161 catatttaaa ggtttgccta agcagttgaa agttgggttg tatcactctt ggggcatttt
     8221 gcaaaattcg ttgcaaaata caccgcttgt accaaccgca gtttgcgatc aaaatgtgtt
     8281 aatggcgttt aaacaccaac atttgccgat ttttggcgtg cagtttcacc cggaatcttt
     8341 tatcactgaa tttggtcaac aaatgttggc aaattggctt gagattacac aagattttta
     8401 gcgtgaaatc cgctataatc cgtcagttat ttaccctttt aaaatctgta ggggcgaaaa
     8461 atttttcgcc ttacttaata tgcaagagat aatttaaatg aaagattcga ttatcaataa
     8521 attagaaagt ttaagtgaac gccacgaaga actacaggcg ttacttggcg atgcctcaat
     8581 tatttccgat caagacaaat tccgtgctta ttccaaagaa tattcgcaat tagaagaagt
     8641 ggttggcacc tttaaccgct ggaaaaagct gaacaatgat attgaagagg ctcaattatt
     8701 actcgatgat cctgatatga aggatatggc agcggaagaa attgcggaaa ataaagccga
     8761 aatcgagaat cttgagcaac atttacaaat tttattattg ccgaaagatc cgaatgatga
     8821 atacaacgcc ttccttgaaa tccgtgccgg aacgggcggt gacgaggctg gtatttttgc
     8881 cggtgattta taccgtatgt acagccgtta ttgcgaaagt aaacgctggc gaattgaaga
     8941 aatgtcggca aatgagagtg aacaaggcgg atataaagag atcatcgtta aaatttcagg
     9001 cgaaggcgtt tacggtcagc ttaaatttga atcgggcgga caccgtgtac aacgtgtacc
     9061 gaaaaccgaa tcacaagggc gtattcacac ctctgcttgc acggtagcgg taatgccgga
     9121 gttgccggaa agcgagatgc cggaaatcaa tccatctgat ctgcgaattg acacctaccg
     9181 ctcatcgggt gcaggcggtc agcacgttaa taccaccgac tctgcagtgc ggattactca
     9241 tatcccgacc gggattgtgg tcgagtgtca agatgagcgt tcacagcaca aaaataaagc
     9301 caaagcgctg gcagtgttag cctctcggat tgtacaagtt gagcaagaac gccaagccgc
     9361 agagcaagcg gatacccgcc gtaacttact tggctcaggc gaccgttcgg ataaaatccg
     9421 cacctacaac tacccgcaag ggcgtgtgac tgatcaccgt attaacctca cggtttatcg
     9481 tttagacgaa gtgatgaacg gcaaaattga tgaattgata caaccgatta tcactgaata
     9541 tcaagcggat cagttagcgg cgttgtcgga gcaaaattaa ttttattgta agggtacact
     9601 gtgtgtgcct gccaaatata aatttgcaaa attttgacta tttttgatcg cttgtagttt
     9661 ctaaaaagtt taaaaatttg aggaaaacaa aatgagaaag ttaggtttat tagcagtatt
     9721 tactttagta ttatcagcct gttcaaattc aacaaaaatt gaacaaacca ttctttccaa
     9781 gcaggatatc gtaggctctt gggtatgcgc tattaaatac gatgatctaa aagtaagcac
     9841 tttagatttt tctgaattta aagctaatgg cgaaatgacg aatttcggtg atatttctga
     9901 tgagaatttt gagcccatta aatttactta tgtaacagga gataaaggga agtgggactt
     9961 aaaaggaaat cgattagtga ttgattatga tctttctgaa cgtaaagtaa aaagaacaac
    10021 accaaaaaaa tttttagagt tcttgaaaca ggaagagcgt aaagcctcaa aaacagctaa
    10081 aaaactcctt aaatatgaac aagggatttt caatattctg agtgatcaga aaaatactga
    10141 aaacagtaaa ataatattag atattttgaa gtttggtcat tcaagaatgg cgattcagca
    10201 aaatatggga gacaaagttt attcaggtgg ttgtgtaaca gctgataaag cagaagagta
    10261 tttagatatc ctaaaaaata gaaattctaa ataatggatt accgagagtg gctcactttt
    10321 gctgagcaaa aattacttga aaatagcggg gcagatccat acctaaacgc aaaatttgat
    10381 gcaaatttgc tattgcaagc agtcacaaaa cgttcaaaat cggccatttt tgctttttcg
    10441 gaaaccctac tttctgaaag cgagcttgca gaattagcgg aaaaattagc tcggcgtgcc
    10501 aaaggtgaac caatggcata tattttaggc tatcgggaat tttggtcgtt gccgttaaag
    10561 gtttcaccgg caacgctgat tcctcgccct gatacggaac gactggttga gttggcgttg
    10621 gaatatgcta acaagcggtt aggaaatcag aaaatgttgc aaattctgga tctcggtacc
    10681 ggcacggggg cgattgcgtt ggcactggcg agtgaattag gcgagaaagc ccaaattatc
    10741 ggggtggatt tccaaaatga ggcggtgcaa ctggcagaag aaaatcgccg aaacttaggc
    10801 ttaaatcaag ttacattttt acaaagcgat tggttcagtt cgcttgcaaa tcaacaattt
    10861 gatttaattg tctcaaatcc gccttatatt gatgaatcgg acgaaaattt gacggtggga
    10921 gacgtacgtt ttgaaccttt aaccgcatta gttgccgata ataaggggtt gagcgatttg
    10981 caaaaaatca tcgaaaatgc accgcttcac ttaaaaccgc aaggggcgtt aatgctggaa
    11041 cacggctgga aacaaggtaa cttggttcga gatttatttg atttacactt gtgggaacag
    11101 gtagaaactg ctcaagatta tgccggcaat gaccgagtaa ccaaagcgat tttaaaataa
    11161 ggcagaaaat ggacgatatt attgaagaat tgttaaaaga gttggaagat ccgaaagtaa
    11221 ccatcagcga aaccgagctg aaaaagtttc tttatcgtga aattttacga ttaactacgc
    11281 tcattgataa gaatgtaagt gagcaacaag tgtttggtca gatgtctgcg ttggtgaaaa
    11341 aagctcgcta taacgtgaat ggcgaaggcg atgaagagag aattaaccaa ttacttcatt
    11401 tagtctatcg tgaatggggc tttcattgct actatgaaga ctatttccac accgaaaatt
    11461 tgttgctaaa tcaagtaatt cgcaaacggc gtggaatgcc ggtttcactt ggggcggtgg
    11521 cgctttattt atccgccgta ttggatttgc cgctttaccc ggttaatttt ccgactcagc
    11581 ttgtgttacg ggctgaaata caccagccga acggggcaac caaagtgcgt tttatcaacc
    11641 cgtggaacgg tgaatttctc accatcgaaa tgctgaataa atggctggaa ggagaaatgg
    11701 gctttggcgt agaagttacc cctgatttgt taagacgagc agaaccacaa gagttgctgg
    11761 aaagggtcga aactgtgttt aaaatggcac ttacccgtga aggcaaatat gaagaaacct
    11821 tacgcttgat tgaataccgc ttggcattta gcccggaaga tccgtacgaa atcagagacc
    11881 gaggaatggt actggcaagt atggattgct accaagcagc attagaagat attaattatt
    11941 tcattgacca atgccctgaa gatccttctg ccgaaatttt aaaaatggaa gtgaaaggac
    12001 tgcaacaaaa aagccaagaa agtgtggtgc attaagctga gaagtagccc caaaggggct
    12061 gagctatgat taacctagta cggctctgcc gtgctaggca gaaaataaga aacaaggact
    12121 ccctatgaca gataaaattg taaaagttgg caatattgaa gtggctaatc acaaaccgtt
    12181 tacgcttttt ggtggtatga atgtgctgga aagccgtgat atggcactta gagtatgtga
    12241 gcaatatgtt gaagtcacgc aaaaactaaa tgtgccttat gtgttcaaag cctcatttga
    12301 caaagcaaac cgttcttcaa tccactctta ccgtggaccg ggaatggaag aaggcttaaa
    12361 gattttccaa gaattaaaac aaacctttgg cgtgaacatc attaccgatg ttcacgaaat
    12421 ttaccaatgt aaacctgtgg cagaagtagt tgatgtgatt caactaccag catttttggc
    12481 tcgccaaacc gatttagtgg aagcaatggc tcgtaccggt gcggttatta acgttaaaaa
    12541 gccgcaattt ttaagcccgg gtcaaatggg gaatatcgta gaaaagattg ctgaatgcgg
    12601 caacgatcaa gtgattttgt gcgaccgtgg cactaacttt ggctacgata atctagttgt
    12661 ggatatgctt ggtttcggca ttatgaaaaa agtgtcgaaa ggttgcccgg tgatttttga
    12721 tgtgactcac tcattacaat gccgtgatcc attcggtgcg gcttccggtg gtcgcagaga
    12781 tcaagtaacc gaactggcac gctccggtat ggcgattggt ttagccggct tgttcttaga
    12841 agctcacccg gatccaaact cggcgaaatg tgatggtcca tctgcattac cgctgtcaaa
    12901 attagaagcc tttgtttcac agatgaaagc gattgatgag ttggttaaga gctttgaaga
    12961 aattgatact tccaaataaa ctttctccgc attaaatcct ttcctacttt ctttgcttcg
    13021 ccaaagaaag taggcaaaga aaggcgaccc tacttcgcta cttttcttcg cttagtgtga
    13081 atgggcttaa cgaaaaattt acattcgctt cgctcagagt aaattttcct acccattaaa
    13141 acacgctcag gtagctcaga agggagttag aaaggtaaaa gacagaatag gagaaaaaaa
    13201 tgctaaatat tgtttttctt gaccgtaccg gtattcctgc cactcacgat attcctcgtc
    13261 cgaattttcc acatacttgg acggaatatg ccaccacctc tgccgatcaa acttttgagc
    13321 gggtaaaaga agcggatatt atcattacca gcaaagtgtt actccagcgt gacttgctgg
    13381 ctaaattacc aaagctgaaa ttaattgcga tcacagcaac cggcacgaac aatgtggact
    13441 tagcggcagc aaaagagtta gggattgcag tgaaaaatgt aaccggctat tccagcgtta
    13501 ccgtgccgga acacgtcatt ggtatgattt actccctgaa acatcgttta gccgattatc
    13561 accgtgattt aattacgtct gaccgctggg caacttgcgg ccaattttgc tatgtagatt
    13621 acccgatcca cgatgtgcga ggctcaacct taggcatttt cggtaaaggg aacatcgggg
    13681 ctgaagtggc acggctggca caagcggtcg gaatgcaggt tatttttgca gaacatcaag
    13741 gcgcaactga aattcgagaa ggctacaccg cctttgaaga ggtattcaaa caagcagata
    13801 ttatttcact acactgccct ttaaccgagc agactcaaaa cctgattaat gcagaaacct
    13861 tagccttaat gaagccgacc gcttatatta tcaatacggg tcgaggccca ctgattgatg
    13921 aacaggcatt gcttgaggca ttagagcaag gcaagattgc cggcgctgcg ttagatgttt
    13981 tagtgaaaga gccgcctgaa aaagacaacc ctttaatgtt agccgcaaaa cgtttaccga
    14041 atttactgat taccccacac gttgcgtggg caagcgattc tgcggttaca acactagtga
    14101 ataaagtgac acaaaatatg gaagagtttg tagcaacggg tatgtagctt gaagtagggg
    14161 ctggtcctgt gccagcccta atattaatag aatgagaggg cgggtataaa acccgcccct
    14221 accaatatca ttttagaaaa acagatgaat ttaacccctt tttttattgc ttttcgctat
    14281 tttagatcga aaagtgctga ccgtttcggg cggttagtca ccaatcttgc cagccttggc
    14341 attgtgctgg gcgtaatggc attggtgatt gtgctgtcgg ttatgaacgg tttggaaaat
    14401 atgcagaaaa ccaatctgct atccaccttg ccgcacgcta tcatcacccc tcaagagggg
    14461 cattttgcca aaggtgaaaa actggctcta cctgaatttg ccaagcaaag tgtggtgatt
    14521 aaccgtgcga atgtgattat ccaaagttca caaggcatta acgccggtca gttaatcggc
    14581 gtggaaaatg ccacagacga tccgttgtta gtggcggaaa atatccccgc attattgcct
    14641 agcggtgaat ttaaggtagt aattggctct cgtttagcca ataaattgaa cgttacggta
    14701 ggcgataagc tccgcttaat gatcactgaa aacagccaat atacgccact tgggcgagtg
    14761 ccggtacagc gtttgtttga aatttcgggc gtttatcaat ctaatcgtga agcgagcgaa
    14821 tttaccctct ttgctaattt agctgatgtc gggcgtttgc ttcgcatcag cgaagatcaa
    14881 gtacaaggcg tgcgtttata tttgcaagat cctttccaag ttaccgaact tagccaatat
    14941 ttcgatgcag aacgctacca aatcagtgat tggcgtgagc aaaaaggcga atttttccaa
    15001 gcggtgaaaa tggaaaaaaa tatgatgggc ttactcatca gcctgattat tgtggttgca
    15061 atttccaaca ttgtgacttc actcagtttg atggtggtag acaaacaggg cgaaattgca
    15121 attttacaaa cccaaggctt aaccaaaaaa caagtgatgc agatttttgt gttccaaggg
    15181 gcgattgtcg gagtaattgg ctcgattatt ggtggtttgc tcggcgtatt gatcgcctac
    15241 aatttagatc agattatcct gctattaaac ccgagcatcc atctgcctac cctaatttca
    15301 ggcacgcaaa ttgcggtcat tgtaggggtg tcgatgttgc tttcactcct ttgcacgctt
    15361 tacccggcat accgagcctc aaaaattgag ccggcacagg cattgagata tgaataataa
    15421 gaacggaaat aaaatgacag aattacttcg ctgtgaacat atcagcaaat tttacgatga
    15481 gggcgaacag aaagttcagg tgctaaaaga ggtgtcattt tcgatgaacg aaggtgagct
    15541 ggtagcgatt gtcggtagtt caggttccgg caaaagcacc ctattgcaca cattaggcgg
    15601 gctagatcag ccaagcaccg gtgaagtctg gattcgaggg caatctctgc aacagctcag
    15661 ttcagacaaa ttagcgttat tgcgtaacca aaacttaggc tttgtgtacc aatttcatca
    15721 cttaatggca gactttaccg cccttgaaaa tgtgatgatg ccgatgctga tcggcaaaca
    15781 gaacaaaact gaagctgcca atcgtgccga gaaaatgcta caagcggtcg gattagctca
    15841 tcgaatgaca catcgcccat cagcactttc aggcggcgaa cgccaacggg tggcgattgc
    15901 ccgagcgttg gttaataatc cggctctggt acttgccgat gaaccgaccg gtaatttaga
    15961 ccaaaaaacc actgaaagca tttttgagct gattcaacag ctcaaccaag agcagaacat
    16021 tgcgttttta ttagtaacgc atgatttaaa tctagcgaat aaactttcac gtagtcttgt
    16081 aatgcgagat ggcgtgttaa gcgaggggag cttatgagta cgccgttttt cattagctgg
    16141 cgttaccaac ggggcaaaca gaaaaacaaa ctggtttcac tgattgctct cttttccaac
    16201 atcggtattg cccttggggt tgcggtatta attatcgggc taagtgcaat gaacggcttt
    16261 gagcgagagc tgaataatcg tgtgctttcg gttgtgccac acgctgaact ggtttcgttt
    16321 caaggcaatc agcctcaacc aatttttgat agcaaaaaat tagaggcatt gataaaaaaa
    16381 tcgcaaaatg tgaccgctag ttcgcctttt gtcagcttta ccgccttaat tgaaaatggg
    16441 gctcagctta aaatcgccca ggtgcgaggg gttgatccta aaaagcaaga tcaggccagc
    16501 caattaagcc aatttattcc acccgagcaa tggcaagcgt tcaatcagca atttcaagcc
    16561 gatgaagatg gcttgatttt aggagccggt attgccaaag cgttagaagt tgaggcagga
    16621 gacgaagtta cgcttttaat tcctcagcca acagaagacg gcaaattagc ccagcccttg
    16681 cgttttaacc taaacgtaac cggcattttg cggctagatg ggcagctgga tcacagttat
    16741 gccttaattc cactgaataa agctcaagag ctgatggaat accaagcgaa tgaagtgtca
    16801 gggcttgaaa tcagccttgc caatccgttt gatgtacaac agcttgaaat gccacaactt
    16861 aacggctata cccaaccgct ttatttgaat acgtggattg ataaattcgg ttatatgtat
    16921 aacgatattc aactgattcg caccgtgatg tacattgcaa tggttctcgt gattggcgtt
    16981 gcctgtttta atattatttc caccttgatt atggcagtga aagacaaaca aggcgatatc
    17041 gcgattttac ggacactggg ggcaaataac ggttttatcc gccgcatttt cttatggtat
    17101 ggcttaattt caggtatgaa aggggcgtta ttcgggctga ttttaggtgt aattttatcg
    17161 ctaaatttaa ccgctattat caaagcgatt gaagcattct ttgaggtgaa attgctttca
    17221 gacggggttt attttgttga tttcttacca agtgaattac attggcaaga tgtcgtctat
    17281 gtattggcag ccacgattat cctaagcctt tttgccagct tataccctgc caaccgagcc
    17341 gctaaattag aaccggcaaa agtgttaagt gggcattaat cattttccta ttctaataaa
    17401 aaagcagcta cccctcgatt atgtcagaaa ggtagctgct tttatttatg ttattactct
    17461 tcgcctaata atttcaactc acgagcctta atttggtttt ttagaatttc aactaagtct
    17521 gaaacgaggt aagtacctaa gtctgcacct ttacgggtac gcacagacac tttaccttcg
    17581 gcgatttctt tatcaccgca aaccaacata taaggcacac ggcgtaaggt gtgctcacgc
    17641 actttgaagc cgactttttc gttgcgtaag tctgctttca cacgaatgcc tgcatcagaa
    17701 agctgtttca ccacttgttg cacataatct gcttggctgt cggtaatgtt cattaccact
    17761 gcttgggttg gggcaagcca agttgggaag aaaccggcat attcttcggt gataatcccg
    17821 atgaaacgtt cgatcgagcc taaaatcgca cggtgaatca ttaccggtgt gcggcgacca
    17881 ttatcttctg ctacataaga ggctgctaaa cgacccggta gagcgaagtc aagttgcact
    17941 gtgccacatt gccattcacg tcctaagcaa tcacgcaatg caaactcaat tttcggcccg
    18001 tagaatgcac cttcgccttc ttgaatttca tattcaagtc cgttgttgcg taaggcgttg
    18061 gctaagcctt tttctgctct gtcccacatt gcatcatcac cgatacggtt ttccggacgg
    18121 gttgaaagtt ttactgcaat gttagtaaaa ccgaaggtgc tgtaaatgtc gtacaccatt
    18181 ttgatacagc tgattacttc tgactcgatt tgttcttcag tacagaaaat atgggcatca
    18241 tcttgggtaa aaccacgcac acgcattaag ccgtgtaatg aaccggacgg ctcgttacgg
    18301 tgacacgaac caaattccgc catacggatc ggtaaatcac ggtaagattt caagccttga
    18361 ttaaagattt gaacgtgacc cgggcagttc atcggcttaa ttgcatattc acggttttcc
    18421 gattgggtag tgaacattaa atctgcgtag ttttgccagt gtccggtttt ttcccaaagc
    18481 acacgatcca tcataaacgg accttttact tcttggtaat cgtactcttt caatttggta
    18541 cgcacaaaag tttcaagttc acggaaaatc gtccagccgt cattgtgcca gaacaccata
    18601 cccggtgctt cttcttgcat atggtataaa tctaacgctt taccgatacg gcggtggtca
    18661 cgttttgccg cttcttccaa acgttgtaaa tattcggcta attgtttttt atcagcccaa
    18721 gctgtaccgt aaatacgttg tagcatttta tttttgctgt cgccacgcca gtaagcaccc
    18781 gctacttttt gtaatttgaa gtggtggcag aaacgcatat ttggtacgtg tggaccacgg
    18841 cacatatcaa tatattcttc gtggtgatat aacgcaggcg ttgccgtacg ttcaatattt
    18901 tcatctaaaa tcgccatttt gtatggctca ccacgtttct caaaggtatc tcgagcttct
    18961 tgccagctta ccgggcgttt taccacgtca tagttggttt ttgccagctc taacatacgc
    19021 ttttcaagag cgtctaaatc ttcttgagtc aaagagcggt ctaaatcgat atcgtagtag
    19081 aaaccgtttt cgatagtcgg gccgatagcc attttaacgt ctgggaataa ttgcttgatg
    19141 gagtgaccta acaagtgagc ggttgagtgg cgaatgatct ctaaaccatc ttcgtctttg
    19201 gcagtaatga tttcaagtgt gctgtcttgg ctgatgatat cagacgcatc acggcgttca
    19261 ccgtttacac gaccggcaat ggtggctttc gctaaacctg ccccgataga ttgggcaact
    19321 tccattacag aaactgggtt gtcaaatgaa cgttgtgaac cgtccggtaa agtaataatt
    19381 ggcataataa atccttacag tggtaatcca tacgagagat tacttgtgtt gtttgaatga
    19441 aaaaaccgcc tacaagcggt cttttttgat taaaattttg caatttgctt attatttccc
    19501 ttacaagtgg ggaataaaag cactgaaatt ctagcataaa acaaagaaaa attaaacttt
    19561 gctgttttca gcggcccctt catcaagctc aatattttca ttttctgttt gtggatcttg
    19621 ttcaagtatt tcaagctgag cctggtactc ttgtaccgct tcttcatcaa atggaataag
    19681 tgcgtcctca acaacttcaa tttcttcaag tgggcttgcg gttgcaattg gggtagcata
    19741 ttgcatctct gctcgttccg ctttcggaat tgatttggtg cggaaagcac aaataaataa
    19801 actaagtgag aacagtccaa aaagtgcata aaagccatat tcagcggaaa ggctcatcgc
    19861 aaaaccgata agcggtggag caactaacgc ccccacacca tagcaaaaca gtaaacccct
    19921 gcttacttca accgtgttca tattattcgg caattcatcg ttggcacggg caatgctcaa
    19981 agcatataag ctaaacagac tacagccaaa gaaaaaggcg ataatatact gtccccaggc
    20041 ggtcaaattt tcttggaaaa ttgcaaataa tccggcaagt gcggttaaag tggcaatcac
    20101 tgaacaagct aaaatggcgt tacgtctgcc aatacgattc gataatatcg ccatcggcat
    20161 ttggctgata aaaccaccga tcatcgagat catcaaataa agcgagattt cacttaatga
    20221 aaagctaaac ttcagcagaa agactgacgc cattgtaaaa aagccgttta ccaacattcc
    20281 gctaataaag ctggttgcta aggctaacgg tgaaatcgca aatagtttag gaatactaat
    20341 gcgctctcga gccggaatat caggctgaac cattttagtt aaagcaattg ggatcatcga
    20401 catcacaacc aaaatggtag ataagataaa aatgtttcgg ctactaagtt ctaaacttaa
    20461 taaacttacg cctaaaataa aggcgagata gaagataatg ttataagtgg caagcacttt
    20521 gcctctggta tcgacattgg ttttttcgct taaccaactt tcgactaaaa gcagcaagct
    20581 ataatgacag aatcccaaaa taattcgtaa cacgccccag atccacaaag tatcaatcat
    20641 aatatgaccg agagcggcga tagcaaaaac agcacagaaa acgctaaatg aacggatatg
    20701 cccaacactt gatacaatgc ggtgagcaaa aatagtgctt aatgccgccc caataaagaa
    20761 agcagcgtta agtaaaccga tgatgatgtc cgttatcccc atttctgcca gtttgatccc
    20821 tgctgaattt agaaataaac cgtagccgaa aaacagaaaa aagatacctg aataaaggga
    20881 gtaaaattta gtgctattca tcaatgctcc ttcaaacatt ctgccagtat taaatcattg
    20941 taccgattta atacctttta ggcaaaaaag ttattattag cgttgagaaa ataacttttg
    21001 gctattttga ttaaaaaatc aaatgaaggt gattttgaaa tgtagtaaaa aatagagcaa
    21061 tcagaattga aaaagggttt gccgtaacaa agcctttaga aagattagag tttcgagaag
    21121 aatttgtagc ttgggctaac caaaacactt gctaggagtg ctttaagcac accacctaaa
    21181 ataaatggat ataagcccgc ttgtaatact gtgccttctg gtacaaagaa agttgagcca
    21241 agccgaaagc aaaggtgatc acacttgcaa ttaaggcgac aaataaactt ttccaaaaag
    21301 agtttaatac gcctttatcg ctataatagc ctaagaaata ggcggttgga atatagccta
    21361 ataagtatcc gcctgttgga ccaaagaaat gatggaaacc tgaagcaccg ccggcaaaga
    21421 caggtaaacc aatcgcccct tcaaaaagat aaagtaatac tgcagcagtt gcggctttac
    21481 gacccattgc aaaaccaacc acagttaaag caagtgtttg ccctgtaatg ggtacagggt
    21541 acatcggcac agaaatttgt gcaaaaatag caagcagtgt tgctccaata aaagttttca
    21601 accaaaatgt agttatacta ttggcttcta gccaacgttt agtttgaatt aattgcgtag
    21661 tgaacataat cctctccttt aatatggtta aaatgttctc aaccgattat ataagaagat
    21721 gtcttttagg gtaagagtga atttaaaatg gtaaaaccag tttatattta ttgtgatgaa
    21781 ggtagcagtg aaattggtgt tcaatcactg ttattggcag taaaacagca tttacagcgt
    21841 ccggcttatc tcatcaatgc caaacaaatt attcaaagca agttttccga tggctgttta
    21901 ttaatcatgc ccggtggagc cgatttacct tactgcaaaa aattaaacgg agaaggcaat
    21961 cgtagaatcc gccaatttat tgaacaaggt ggagcttatc tcggtatctg tgccggagct
    22021 tattatggct gtgctgaatt gaattttgta gggcgtgact atagcgtaaa tggtaatcga
    22081 gaactagctt tatttaatgg cattgcgggc attgcgaaag gcagtctgcc gcagtttacc
    22141 aacgggcaac tttacgataa aaacattggt agcaaagcga tagttgaagt aacacttgca
    22201 gagggtggaa aaatgccgtt ttattatcac ggtggttgct gttttgaacc aaattcaaca
    22261 acagtgattt acaacccgtt ggcttattat cctgatggct cagtagcaat gatagaggga
    22321 gagctagggc gaggttacta tctgttgtcg ggtgtacatt ttgaattaca agcggtcgtt
    22381 tattggcaaa aaattgtaaa ttgctgtgaa aatcttgaca taaaaacaca agaagaagca
    22441 atttgctcta attttaatgt aaattatggc tcgcaaattt ggcaacatct aaagcaacga
    22501 ctaaatcaag cgtaaaaaaa taacctttcg ctattctgcc aaatggtttc tgcaatcaga
    22561 tttggtgatt ctgttcttaa ttcacataga ctattgaaag tcactaaaag ccgttccggt
    22621 cggttcggct ggccttgaaa gccaaacacc ggcatatcgg gcgagtcggt ttccagtagt
    22681 aaactttcaa gaggtagttt gcggatagcc tcacgggttt tgttagcacg ttcataggta
    22741 atagttcccc ccacaccaat tttataaccg agatcgacaa aacgttttgc ctgttcatag
    22801 ctgccggcaa agccgtgaac cacaccggtt ttggttagtt gggctttttt gaggaacaca
    22861 aaaagttgat cgtggctttt acgtgaatga agattaacgg gtaaattaaa ttttttcgca
    22921 agggaaagtt gtgcctctaa aaattcacat tgctttttcc ataattcagg ggtagaaact
    22981 tcacttaccg ctttttccaa accgatttcg gcaatagcgg tacactgtgg atcttgttgg
    23041 cttagcaaat tttccaataa gattaaatct tgttgttggt gctgttgaat atacagtgga
    23101 tgcaacccta atccatacac caaattttcc ggtttttgtt tggcacaagc ggtcactttt
    23161 gcaaaatttt ttgcaaatac ggcaacgata agaatgcatt caacctgatg ctgtttggca
    23221 ttctcaacca attccggaat gcttaaattc aggctttctg cgagatagtc gaggtgagta
    23281 tgagtgtcaa aaaatcgcat aataaaacca ataaaaacgg ggactagatt gtccccattt
    23341 ttagcatttt acgcaagcaa ttagtttgtt acataagcat cttcatcacg agcctcagat
    23401 ggcttgagga aagcaaagaa gcaaataaca caaactaccg taatcgcaaa accgatataa
    23461 actgataatt cataatctaa accgaagccg attttgttgt tcgcaaggta agttgcacac
    23521 acggtagtga taaaccatgc aggaatcgag catacccagt ggaatttttt atagcggtat
    23581 aagtaacctg cggcagtcca taacataacc attgcagtca tttggtttgc ccaagtgaag
    23641 taacgccata atacgctgaa atcaactttt gagacaatga aaccaagtac gaataatggt
    23701 acggcaatat acaaacgttt tactaaggta cgttgttcta aaccaaagat ttccgctagt
    23761 tgtaaacgag cggctcggaa tgcagtgtca cctgaggtga ttggtaatac tacaacgcct
    23821 aatacggcaa aaataccacc gataaaccct aagaagtgta acgagctgtc atataccact
    23881 ttagacggtg aaccggcaga gatcgcatct tgtaaggctt gtgggttttc atagaatgaa
    23941 agacctactg cacaccatac taatgcaatt accccttcag taatcattgc accgtagaaa
    24001 ataaaacgac cttctttctc attttgcgca cagcgagcca ttaatggggt ttgggttgcg
    24061 tggaaaccgg ataatgctcc gcaagaaata gttaagaata gtaatggcca aattggaaca
    24121 tcacctttca cttggaagtt ttgggtgaat ttttcccacg ttaagccttg accgtctgca
    24181 ttcactgtac ggaagaagtc gataggatca gtcgcactta agtgagcgct gactagacca
    24241 tataccatac ctacagacat aaagagtaat aatgctccga agaaaggata aattcgaccg
    24301 atgattttat caacaggtag taatgtagca agaatatagt aagcaaaaat gattaacgtc
    24361 cacacagaaa tcacggttgc tttatccata ccccaaacgg ttacgccacc tgatgctaca
    24421 gattctttaa ttgcttcaac atcacctaat tccattgcac tttgggttgc acctgcaata
    24481 tccatggtga tggtagagag taactgagca gggcttgcaa cgaaaactac gcctactaat
    24541 aaaagcaaga tgagcgccat tacgttgatg aataacttga ctggacgacc caagaatttc
    24601 cctgccagat ttggcatcgt tgcgccaccg ttgcggatac ttaacatacc acagaagtag
    24661 tcgtgtactg caccggcaaa aatacaacca atcacaatcc aaagcattgc aactggtccg
    24721 tataaggcac caagtattgg tccaaaaata gggccggtac cggcaatgtt taataattga
    24781 atcagccaaa tcttggtttt agacattggc atatagtcaa caccgtcgtt cattgcataa
    24841 gccggcgttg ctcttttcgg gttaatcacg aagatttttt caatgatttt tccgtaagta
    24901 aagtagccaa gaacaagcac ggctacacag aaaaagaacc acaacatagt agaaatccta
    24961 taaattgaga taaatgatca tttttagcag aactgataaa ggcgtgccat tgtaagtgag
    25021 gagtgaggat aaagtaaaat gaattgttag atttgtgtga ataatttact gaaaatgtga
    25081 ggttcatcaa aaaatccctt tgttctgcgt caatcaaagg gactttttaa agttaaatat
    25141 cgaatttttg aattttcgct tcaatgcctt gggcatctaa tccaagatcg gcataagctt
    25201 cagcttgagt agattgggga acgaaaaagt caggaatacc aagcattaca agcggtttga
    25261 ttttgccgat attttgcaaa tattcattca caaaactacc tgcgccacct tgaatagcat
    25321 tttcttcaag cgtaactaac aactcgtgtg aatccgccac tttttgaagt aatgcttcat
    25381 ctaatggttt aatgaaacgc atatctacca acgtgtagtt atgtttttca gccacaatct
    25441 ttgcttcatc aagcaaagca ccaaaattta aaatcgcaac ttttttacct tcacgaataa
    25501 tgtttccttt acctacttca agtctttgca ttggctcaag ttttacccct ttagcattgc
    25561 ctcgagggta acgaatagca cttggcgtat tcatcgtgta agcggtataa agcatttttc
    25621 gcatttcatt ttcatcgctc ggtgccataa tggtcatatt gggaatacaa cgcataaaac
    25681 ttaaatcaaa tgcaccttgg tgagtttgcc cgtcagcgcc gacaattccg gctcggtcaa
    25741 tcgcaaaaat caccggcagg ttttgaatag caacatcgtg aattaattgg tcataagctc
    25801 gctgcaagaa gctggaataa attgcgacta ccggtttgta acctgcgatt gctaagcctg
    25861 ccccgaaagt cactgcgtgt tgttcggcaa tcgccacatc aaaatattgt tcagggaaac
    25921 gtttggaaaa ttctaccatt cccgagcctt cacgcattgc cggcgtaatg ccgataattt
    25981 tcggatcacg ctctgccatt tcacatagcc aatcgccaaa aatattggaa taagtaggtg
    26041 ctgcttttga ttttggtaac tcggctgcgg tagggtcaaa tttcggaacg ccatggtagc
    26101 caatcggatc attttccgca ggtgtgtagc ctttgccttt tttcgtgcga atatgcagaa
    26161 attgagggcc tttcagctca cgcatattgc tcaaggtttt gactaactcg tcaatattat
    26221 gtccatcaat cgggccgata taattaaagc ctaactcttc aaacaaagtg ctttcagggg
    26281 agaaaatcac ccctttcata tgctcttcgc tttttttcat aaagtttttg atggtaggca
    26341 ctttatctaa aattttctta ctgccgtcac gcactgaagt atagagcgaa ccagaaaaaa
    26401 tgcgggcaag gtggttgttt aatgccccga cattttcaga gattgacatt tcattatcat
    26461 ttaagataac caacatatcg gtatgcaatg cacctgcgtg gtttaatgct tcaaatgcca
    26521 ttccggcagt gattgcacca tcaccgatta cacagacggt tttacggccg gcattttctt
    26581 tttctgctgc caccgcaatg ccaagtccgg cactgatcga agtagaagaa tgcccaacgc
    26641 ttaacacatc gtaagggctt tcttcacgcc aagggaaggg gtgaatacca tctttttggc
    26701 ggatagtgtg catttgatct cggcgcccag taaggatttt atgtgggtaa gcttgatgac
    26761 caacgtccca aattaattgg tcgaaaggcg tttgataaac ataatgcaaa gctaccgtaa
    26821 gctctactac ccctaagcca gaggctaaat gtccgctagt ttgactgact gattccaata
    26881 aataggctcg cagttcatca actacggttt gaagctggtc tttagaaagt aaacgtaaat
    26941 cttccggtga gttgatttcg cttaacagag gatacttctt ttccataatg ttttattacc
    27001 cacaaccatc aaataataga tgatattaaa ttaagctttg agttcttcgg tcaaagtagg
    27061 ctgaatgcta tttaaaattt ctttaaccac acggccgtta ccaacaacca gattacctgt
    27121 tttcaagtaa tctgttccgc caacaaagtt agtcacaatt gcaccggctt cacgggcaat
    27181 aagttcaccg gcggcgaaat cccacggttt taagccgatt tcaaagaaac catcaacacg
    27241 acccgctgca acataggcaa gatctaaagc ggcagaaccg gtacggcgga aatcagctac
    27301 tccgttattc attaagcctt caagcatatt taaatgtgca tcacgatgtc tgatgacttt
    27361 gaaaggaaaa ccggttgcaa ttacagtgcc ttttaaatca cggcgttctg catcaatgcg
    27421 taaacggaac tcgtttaatt tagccccttc gccacgcacc gcagtgaaaa gctcgttacg
    27481 gataggatcg taaactaccc ctactgttgt acgtccgttt tcacgcacgg caatcgacac
    27541 agcaaaatga ggtaagcgtt ttacgaaatt ggttgtacca tctaatggat cgatcaccca
    27601 ttgtacattt tcattgctac cgtttaacac gccggactct tcggtcacga tcgagtgttc
    27661 agggtaagat ttacggatca catcaataat tgccgcttcc gctgctttat cgatttcagt
    27721 cacataatca ttcgtatttt tttgtaaaac ttgtgtatct tgaggcgatt gttcatagcc
    27781 tttggcaata atattgcctg cttttcgtgc cgcacgaata gcaatgttta acattgggtt
    27841 catatttcca ccagatttta aagaacataa taaagcacga attataaaga atgtagcgaa
    27901 ataaagaaac aacaagcggt ctaatctgtg aaaaattttg caaaaaaatg gctttttcta
    27961 accgcttgga gtttggattc gttataatac ctcccattca agccacccat ttaggtacta
    28021 aaaatgcaat ttaaagaaaa taaccaacct cgttttaaac acagagaaga acgccgttca
    28081 gatgagtgtt ccccccgttt ttcagataaa ggcaaaatgc gaggaaatga aggtaaaagt
    28141 gacagaccgc ataagctaca ttttaagcgt gacgaggctt attcacgctc tgagcagatt
    28201 tatccagcag aaggcaaaaa agccagtggt gaaggtagtg tgcaaatttg ggtaaaaggt
    28261 gggaatagct cagttaaaga gaaaaaaaac ggcccgcttt caccgagagc gcctgagaaa
    28321 attaagaaaa atcgcttgga agagatgaaa gtctatggcg aaaatgcctg tatcagtttg
    28381 ttccaacaac gtcctgaatc tattgtacgt ttatgggcaa cagtggaggg ggcaaaaaaa
    28441 ttaggcgatt taatgagcta tttggctcag cacaaaaaag cctatcacgt tattgaccgt
    28501 gaagagatgg agcgagtcac cggtactgaa catcacggcg atatgtgctt attggtgaaa
    28561 aaaacggctt catttgtgct agagggctat ttacaagtgc cgaaaaaaca agattgcttg
    28621 gtactgttag atggtgtaaa caatgctcag aatgtggggg gaatcatcag aacgtgtgct
    28681 ttttatggtg tgaaaggcat tattactgaa aatgtggata gcttaaactc cagtgctgca
    28741 gctcgtgtcg cagagggtgg tttggaattt gtgcgagcgt tagaaactaa aaacaagcat
    28801 attgctttgg tacaactccg ccaagccggt tatcaaattg tccacctcac acgccataag
    28861 caagcccctt ctttaaccaa aattaagctg gcggaaaagg tggtttttgt attaagtgag
    28921 attcctgcaa gtgatgtggc ttacgcagaa gacacaacaa tacagctttc ctttaataat
    28981 ccgttaaata gtggtttaaa tgtggcggta aacgcaggta ttctacttaa tcaatggtat
    29041 caaacccaca ttctttaagg aattgaaatg aatcagcaaa aaccgtttga agtgattgcg
    29101 attgttggca cacctcgcca cgacagtgca tttgaaacac atcttgccgt ttataattgg
    29161 ttaaaagatc gtgattatca aattttagtg gaaacagagg ttgccactca gttacagctt
    29221 aaggaaagct acagtttaga tcagattggg cagcgcgcag agttggtgat tgtgataggt
    29281 ggcgatggta atatgcttgg catcgcccga gctttggcta aataccgagt gccactgata
    29341 ggcattaacc gtggcaatct gggtttttta accgatatcg cacctcaaac ggcttttgaa
    29401 cagctttata gttgcttagt caaaaatgag tatgtgattg aagagcgatt cctgttagag
    29461 gctttcattg agcgcaacgg taaaattatt gccgcaaata atgccttgaa tgaaattgtg
    29521 gttcacccaa cccaagtggc tcgaattatt gaatttgaag tttatattga cggaaaattc
    29581 gctttttcac aacgtgcaga tggcttgatt gtggcaacgc ctacaggctc aaccgcctat
    29641 tcactttctg ctggtggccc gattttaacc ccgaatatga atgcaatggc attagtgccg
    29701 atgcaccctc acactctttc ttctcgtcct ttggtggttg atggcgatag tcaaatttcg
    29761 cttcgttttg ccaaatataa tacccctgat ttagaagtga tttgtgacgg gcaggtgaat
    29821 atgcacttta cgcctgaaga tagagtcttg gtgcgtaaaa gcccggataa attacagctg
    29881 ctccatttaa aagattatag ctactttact gtattaggtt ctaaattagg ctgggcaagt
    29941 aagttgtttt aaacacaagc ggtgtttttt ctgattaaat ttgcaaatgc aatatgaat
//
LOCUS       DANLRW010000020        28927 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.020, whole genome shotgun sequence.
ACCESSION   DANLRW010000020 DANLRW010000000
VERSION     DANLRW010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28927
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.020"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(373..1558)
                     /locus_tag="PXA71_000714"
                     /pseudo
     CDS             complement(373..1558)
                     /locus_tag="PXA71_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252650.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1717..2274)
                     /locus_tag="PXA71_000715"
     CDS             complement(1717..2274)
                     /locus_tag="PXA71_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2857 domain-containing protein"
                     /protein_id="HDL5104849.1"
                     /translation="MIKPITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLS
                     IDEIMDISNSVVSFAKVEINHETFWKLLAIAQTNTQQRQIIDRALLLGASIEMLHQYF
                     GLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQRYKQRMESLDSQEGLELLC
                     LIAEEGNMNLTVVWKLVSEWYSKHK"
     gene            complement(2267..3916)
                     /locus_tag="PXA71_000716"
     CDS             complement(2267..3916)
                     /locus_tag="PXA71_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5104850.1"
                     /translation="MTKDEKRLAAIAKGLNVSPISNTAPSYQTATPAHYSSDEEYITV
                     TLDKLRPYEHNPRKTRNPNFEMIKESIRRRGLDHKPNITRRPGEDFYIIADGGNTRIQ
                     ALKELFTETKDPKFWSISCQYKPWQGDTADSVEAELNLLIGHLIENDTRADLSFIEKA
                     LGILQAKEYYEKKLNKSLSARELATELEGDGYIIHYTLANKMERCVLYLYPHIPEVLF
                     KGLGHTQIDKLLAIRNNAEEVWAAHQFDTDITFESLWSENLSKFNEATPFQAKEFQSE
                     LITAMVEALDGKVSFETLYLDIDLDEQKFKKIAAKQQEIDNLVEKTVDQINTRQEQQA
                     AKFEPVIKNENKSVATESAKNVIDDVIDDNESDNEQNNAITDLSQLDAPLLDSQDNQT
                     EDYLSQIAHNFGLTPGMSIQEQREQRAESNGLTFACEGRQPVEDIWLIHPARQYRSEA
                     YSLALDIAESVGIDHLVEHVVKQPVDYTYAMKPTDSELSPSVLTLYSFLSMLQTAKHK
                     DENNCVLDSNFLFELDDITLVKLFRLIRVSRHIHQQGGEND"
     gene            complement(3925..5289)
                     /gene="dnaB"
                     /locus_tag="PXA71_000717"
     CDS             complement(3925..5289)
                     /gene="dnaB"
                     /locus_tag="PXA71_000717"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL5104851.1"
                     /translation="MSNPNKPTTHLYSAEAEAAVIGGLLLDNTLFDDVIGKINSADFY
                     FGVHQALFKGITDLIEVGKPADILTLDEYLKQKNLLKEIGGFAYLAEVSKNTPSAANV
                     GAYADVVLLHSKHRQLLKLGQFIVDQTQTVKTPEKLESVIDEVEKKMTEFSLSDNTKS
                     ATDLSDIFASMLSRMELSAKNGDPVTGTPTGIQGIDEATTGGQPGDLIVIGARPSMGK
                     TAFSQTIAYHTLEKFESAPVFYHSMEMPADQILQRFLAMRARVGLQNIRQADRLDDEE
                     WAKLTAAMGYILEHWKNRLVIDDEGSLTPQKLRTKVRQNARKYGKPSAIFIDYIQLMQ
                     TSQRYENRNLEIANISRSLKLLAKEMDCPVYALSQLNRSLEQRANKRPINSDLRESGS
                     LEQDADVILFIYRDEIYDEDSAFKGTAEIIIGKQRNGPLTSVMTNFRSEFALFENRAS
                     TASH"
     gene            complement(5301..6125)
                     /locus_tag="PXA71_000718"
     CDS             complement(5301..6125)
                     /locus_tag="PXA71_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDL5104852.1"
                     /translation="MKPLQNGTNKPFTITIASTKGGSAKSTNAANIGAFCAEHGLRTL
                     LIDTDTQPTLSSYYELEYQAPGGTYEFLHFKDVDPTHIISRTAIPNLDLIQSNDPSNK
                     ISPMLRDSPDGALRFSLLLQKIEGYDVIIIDTRGTRDITVDMSVLAADVLFCPILPHI
                     LSAKEFIRGTIGMYQDLETFTAFGFTLPPLKAMINCVDHTKDVKLVSDYLHTLFQNEF
                     DENKTLLEFSVPDRVAYREAATFSKPVYRQSQAEYETIRQLCALLMPQFAQSHFSE"
     gene            complement(6219..6304)
                     /locus_tag="PXA71_000719"
     tRNA            complement(6219..6304)
                     /locus_tag="PXA71_000719"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6268..6270),aa:Leu,seq:caa)
     gene            complement(6616..8076)
                     /gene="xseA"
                     /locus_tag="PXA71_000720"
     CDS             complement(6616..8076)
                     /gene="xseA"
                     /locus_tag="PXA71_000720"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDL5104853.1"
                     /translation="MSNILTVTQLNYSVRHLLEMEMSHIWLTGEISNFSQPVSGHWYL
                     TLKDDKAQVRCAMFKMKNVRVNFRPQNGMQVLVRASVTLYEPRGDYQLIIESMQPAGE
                     GLLQQQFEQLKAKLSAQGLFAQEHKKPIPTFVKTVGIITSSSGAALQDILHILQRRDP
                     SLSVVIYPALVQGKEATQDIVNMIELANRRNECDVLIVGRGGGSLEDLWCFNEESVAY
                     AIYHSQIPIISAVGHETDVTIADFVADLRAPTPSAAAELVSRDQNELKRQLQHQFDKV
                     NLAFDRVWNHKFNRFQQLPLRLNAQHPSKQIQSQQQRFDYMEYRLEQAIYALVAAKKQ
                     VGKELNVRLIHQHPQKQIERQSQMLKQLELKLHWQMEQQLSKKQQKWKNITQRFERNP
                     LPYQLYQQQTMVAKMSQRLAYSIEKIMLKEQRHFQELCTKLDGLSPLKILTRGYSITQ
                     TKDGKTLTSTENIERGEAIITQLKTGKIISQVVDFL"
     gene            complement(8227..8303)
                     /locus_tag="PXA71_000721"
     tRNA            complement(8227..8303)
                     /locus_tag="PXA71_000721"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8267..8269),aa:Met,seq:cat)
     gene            8513..9619
                     /gene="mltA"
                     /locus_tag="PXA71_000722"
     CDS             8513..9619
                     /gene="mltA"
                     /locus_tag="PXA71_000722"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HDL5104854.1"
                     /translation="MNWKAYKKAIAAASVVAIATVLVACSSSGQKGKTTSYDAEKAKF
                     GAKYNGRHFMPYGTHFQAGRLGLNAAPVNQLDFLQQLSNVRAYSSLADSYAIAYGKIS
                     RWISSGGNINDLAKYGISTRLMRGEDGYQNVLMTGYYSPVIKARRTPQGQYQHPIYAM
                     PSSKRFSRAEIYAGALQGQGLELAYSNSMLDNFLLGVQGSGYVDFGDGRLNYFAYAGQ
                     NGFKYASVGRLLVEDGEIPKEKMSVQAIREWGQRNPSRVQGLLERNPSYVFFKNDPTG
                     QVKGSAGVPLVPLASVASDRSIVPSGSVLLVEMPLIDSKGNWTGKHEMRLMVALDVGG
                     AVKGHHFDLYQGIGDKAGHIAGLMKHYGRVWVLN"
     gene            9632..10081
                     /locus_tag="PXA71_000723"
     CDS             9632..10081
                     /locus_tag="PXA71_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104855.1"
                     /translation="MLKKLSAIFLLLPSAVLANNLQNITASTEPKYKISEIDVRILIR
                     QLNNIEQCIYPELAKPGYQQIYANWNLAENLTMQYFEYQLLKELLGEENQKLMQNDTL
                     STEYFHLLHSRLNHQKANVDPEKCDTFKPRYKEIYKSMENALTKKNQ"
     gene            complement(10115..11632)
                     /gene="purF"
                     /locus_tag="PXA71_000724"
     CDS             complement(10115..11632)
                     /gene="purF"
                     /locus_tag="PXA71_000724"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDL5104856.1"
                     /translation="MCGIVGIIGNSPVNQAIYDGLTLLQHRGQDAAGIVTIDDENRFR
                     LRKANGLVSDVFQQEHMVRLQGNVGIGHVRYPTAGSSSVSEAQPFYVNSPFGITLVHN
                     GNLTNNAELKARLYNEARRHVNTNSDSESLLNIFAYFLDLYSTQHLSPDNIFETVRKT
                     NDSIRGAYACIAMIIGHGMVAFRDPFGIRPLVLGKREIEGKTEYMFASESVALDVVGF
                     EFVRDVLPGEAIYVTFDGQLHSQICADNPKLNPCIFEYVYFARPDSVIDGVSVYSARV
                     HMGELLGEKIKREWGRIIDDIDVVIPIPETSNDIAVRIANMLYKPYRQGFVKNRYVAR
                     TFIMPGQAQRKSSVRRKLNAIASEFKGKSVLLVDDSIVRGTTSEQIVEMARAAGAKRV
                     YFASAAPEIRYPNVYGIDMPTCEELVAYDRSVEEVAQMIGVDKLIFQDLEALYKSIQL
                     ENPTIHRFDDSVFTGEYITGDVDKCYLDSIARSRNDKAKAEAAKQATNLEIHNER"
     gene            complement(11647..12150)
                     /locus_tag="PXA71_000725"
     CDS             complement(11647..12150)
                     /locus_tag="PXA71_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDL5104857.1"
                     /translation="MVDLIVIGIIAFSVLISLWRGFTNEALSLLGWVIAFFVASSFYP
                     YLSGYLTQINSVYLQNSEFLRNGIAAAILFILTLIVCGVINGLLGKVIDLSGMSITDR
                     ILGGAFGALRGILIVSAILFFLDTFTQASQTELWKSSLLIPHFDFIVKWFFEQLQANS
                     SFLNTTK"
     gene            complement(12296..12757)
                     /gene="rnhA"
                     /locus_tag="PXA71_000726"
     CDS             complement(12296..12757)
                     /gene="rnhA"
                     /locus_tag="PXA71_000726"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HDL5104858.1"
                     /translation="MKLVEIFTDGSCLGNPGKGGIGILLRYNGYEKTVSKGYFQTTNN
                     RMELRAVIEALAMLKEPCKVQLNSDSQYMKNGIQKWIFNWKKNDWKTSDKKPVKNKDL
                     WVALDQEIQRHQIEWSWVKGHSGHRENEICDELAKQGANNPTLDDVGYIAD"
     gene            complement(12850..14181)
                     /gene="argG"
                     /locus_tag="PXA71_000727"
     CDS             complement(12850..14181)
                     /gene="argG"
                     /locus_tag="PXA71_000727"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005722481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDL5104859.1"
                     /translation="MSATILEALPLGQKVGIAFSGGLDTSAALLWMRKKGAVPYAYTA
                     NLGQPDEDDYNAIPKKAMEYGAENARLIDCRQQLAHEGIAAIQCGAFHISTGGIPYFN
                     TTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPKLKIYKPWLD
                     QLFIDELGGRLEMSKFLIENGFDYKMSVEKAYSTDSNMLGATHEAKDLEELSTGMKIV
                     KPIMGVAFWDESVEIKAETVSVTFEEGVPVALNGKRIDDAVELIMEANRIGGRHGLGM
                     SDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQ
                     GRWFDPQALMLRETAQRWVAKAITGTVTLELRRGNDFTILNTESPNLTYEAERLSMEK
                     VEDAPFTPADRIGQLTMRNLDIVDTRGKLAVYTDAGLLAANNSVIPQLGKK"
     gene            14365..15405
                     /locus_tag="PXA71_000728"
     CDS             14365..15405
                     /locus_tag="PXA71_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 9 protein"
                     /protein_id="HDL5104860.1"
                     /translation="MKKLLVIRNDKIGDFMVCFPAFAMLKQSMPNVEITALVPSYTAP
                     LAELCPSIDKIIIDTANKKDKNEFNRILQAVKNEQFDAVICFVSDWHNAKLTWQSGIK
                     YRLAPATKLFQFLYNHRLTQRRSQSAKAESEYNLDLARAFLSKHNIPIVEPHTPYLSV
                     EQQTVQAQKAKLCEQLNITTVKKWVFVHSSTGGSANNLSIEQYAELIQGILAEFDCYV
                     VLTAGKGESEKAQQLAQQINHNNVVVYDKNEGLQDFTHSLACADLFIAGSTGPLHISG
                     ALNIPTIGFYPSRLSAIPRRWKPINDANKHIAFCPPSDKASQMNLTLISISEALKTIV
                     PFIRRMWNTPSL"
     gene            complement(15470..16228)
                     /locus_tag="PXA71_000729"
     CDS             complement(15470..16228)
                     /locus_tag="PXA71_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5104861.1"
                     /translation="MPTLSVAMIVKNEAQDLRACLDTVKDWVDEIVILDSGSTDETPQ
                     IAAEYNARFYTNTDWQGFGKQRQLAQQYVTSDYVLWLDADERVTAELKQSILQAVKND
                     EKNTVYKISRLSEVFGKQIRHSGWYPDCVVRLYRTEFAKYGDELVHEKVHYPKEAKIQ
                     KLQGDLLHFTYKDIHHYLVKSASYAKAWAIQRANAGKTASLFDGVTHAIGCFVKMYLL
                     KAGFLDGKQGFLLAVLSAHSTFVKYADLWNRTRK"
     gene            16355..16669
                     /gene="yhbY"
                     /locus_tag="PXA71_000730"
     CDS             16355..16669
                     /gene="yhbY"
                     /locus_tag="PXA71_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HDL5104862.1"
                     /translation="MSITLTTKQKQFLKGLAHHLSPVVMLGGNGLTEGVLAEIDNALD
                     HHELIKVKVAGADRETKQLIIDAILRETKAAEVQTIGHILVLYRQSEEKKISLPKATK
                     AI"
     gene            16730..17452
                     /locus_tag="PXA71_000731"
     CDS             16730..17452
                     /locus_tag="PXA71_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDL5104863.1"
                     /translation="MFKKFSLYTLAMLLIPVVTWLANWHWSLAIQYAEFDFDYFLYLI
                     TETGSVPYAIITCVVFALLLARVVRKRYSLIFVITVCVASMVATQAIKTAMKSTFQEP
                     RPFVTALFQDKTDDFYQLTREQRGLAVMEKIGANQNFVTAHQAKEVGYSFPSGHTIFA
                     VSWLLLVVGFCRNMRGQAVVLAHFFAISWAALMLISRLRLGMHYPIDLFTSSLIAFLI
                     NLALFVWFVPWLESKKWFAKKP"
     gene            17521..17682
                     /locus_tag="PXA71_000732"
     CDS             17521..17682
                     /locus_tag="PXA71_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104864.1"
                     /translation="MEMSIEKIAELLSDKEKDDYPFSIEERQFAAQASADTWEAILNN
                     TIQPFDFKK"
     gene            17690..18052
                     /locus_tag="PXA71_000733"
     CDS             17690..18052
                     /locus_tag="PXA71_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104865.1"
                     /translation="MYQVFIAEPKDPNLEKGLLKHFIKSYLTQEELDFLHKILTNLPN
                     IRPFWGDTGYKYIVIDNVYFLYEVSESETKVILLGTKFNNKRKTFNFANTKTQQKSMK
                     KWINDLAIYKPHKINQSQ"
     gene            18065..18982
                     /gene="nagK"
                     /locus_tag="PXA71_000734"
     CDS             18065..18982
                     /gene="nagK"
                     /locus_tag="PXA71_000734"
                     /EC_number="2.7.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
                     /protein_id="HDL5104866.1"
                     /translation="MAIYYGLDVGGTKIELAAFNEKLEKLHSERVPTPQTNYQDWLTA
                     IKTLVETADTKFDEKGTVGLGIPGFVNRETGIAEITNIRVADGKTILKDLAECLGREV
                     RAENDANCFALSEAWDESNKPYSTVLGLIIGTGFGGGFVFDGKIHSGRIGMAGEVGHM
                     QLNYHALKLLDWDKAPIYECGCGNQACLDTYISGRGFELLFNDLVGEKISAKAIIERF
                     YQQETKVVAFVEKYIELMAISISNLITILDPDMIVFGGGLSNFDYIYQALPKALPKHL
                     MRSAKVPVIKKAIHGDSGGTRGAAALFLK"
     gene            complement(19053..21002)
                     /locus_tag="PXA71_000735"
     CDS             complement(19053..21002)
                     /locus_tag="PXA71_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HDL5104867.1"
                     /translation="MYQRSQSRTVLFPILLFVGINLVILTLSRLVLGVWQSDRVSAVD
                     GWIPLILQGIRIDISSLCWLFGLPALFSVLCFHKNVLGSIWQTVLRIWLTVGSVFILF
                     MEVATPNFIETFDLRPNRLFIEYLVHPREVFTMLINGHLWAVICGIGIAMISLIIYWK
                     LSGWATKNLHFPSWKMRPLLALLVAAIVFVGGRSSFAHRGINPAMVAFSSDPLVNSLV
                     LNSGYSVLYAVQQLKDEDKSSEQYGKMSVEEMFNIVKQVRNRPASDYISDEIPTLTQN
                     KATYQGKPKNIVIILEESLGAQFVGSLGGKNLTPNLDKLSEQGWYFTNLYATGTRSVR
                     GIEAVTAGFTPTPARSVVKLTKSQTNFFSIAELLKRQGYHTSFIYGGEKHFDNMASFF
                     YGNGFQQIIDEKDYKNPKFTATWGVSDEDLFDKANETFNQLHKSGKPFFSLVFSSSNH
                     DPFEFPDGKIELYEQPKQTRHNAAKYADYAIGHFFELAKKSEYWQDTVFLVIADHDSR
                     AVGEHLVPIQHFHIPALLLGEHIQPRTDNRLVSQLDMPTTLLSVAGISGQYPMIGYDL
                     TQDIDPNRAFMQYDATQAMMRGNDVVVMRPNLPIEGFSYDKANYKLTPKEQPESFKKE
                     ALAHALLGSYLYKNQLYKLPEETKQ"
     gene            complement(21035..21823)
                     /locus_tag="PXA71_000736"
     CDS             complement(21035..21823)
                     /locus_tag="PXA71_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDL5104868.1"
                     /translation="MQVTELNIYPIKSTQAIQVSQAFVEPKGLNFDREFMLAEPNGKF
                     ITARKDPELYRLAAFPIATGVMITHTSGQKCVALYQDFVEEQSSEVWGTHFNAKVAAE
                     AVNQWLSEIFGRAVQLRWLGSQSQRIVANFADHPMSFADSNPVSLMSLKSLEQVQQWS
                     PIPLEMARFRPNIVIDGNVAFEEEQWQQVQIGEVLFTKAALCTRCILITRDLNTLELD
                     PKSEPFRTLKEKHCDEKGKPVFGIHLVPQNSGVIKVGDPVIIQL"
     gene            21948..22178
                     /gene="xseB"
                     /locus_tag="PXA71_000737"
     CDS             21948..22178
                     /gene="xseB"
                     /locus_tag="PXA71_000737"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDL5104869.1"
                     /translation="MAKKPTQDFESTLKELEAIVTHLESGDLPLEEALNEFETAIKLV
                     QQGQERLQKAEQRIQILLNKNDTAPLSDYERE"
     gene            22184..23077
                     /gene="ispA"
                     /locus_tag="PXA71_000738"
     CDS             22184..23077
                     /gene="ispA"
                     /locus_tag="PXA71_000738"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HDL5104870.1"
                     /translation="MSYLLATDLTHLQQRINHFLAEKLKTTDSVGSPLVEAMAYAVLL
                     GGKRVRPFLIYATGRMLGVPLEKLDHSAAAMEAIHAYSLVHDDLPAMDDDRLRRGKPT
                     CHIAFDEATAILAGDALQSFAFELLATDPHLTDREKVVQVTELATASGAKGMCLGQSL
                     DLIAENKAVSLEELELIHRNKTGALILSSVMMGLNLSEYSQNVAIKQPLVNYAKAIGL
                     AFQVQDDILDVIGETDKIGKIVGSDEHLNKSTYPKLLGLDGAKQKAEMLYQTALHSLE
                     QLPFDTTALKELANFIVKREN"
     gene            complement(23112..23912)
                     /locus_tag="PXA71_000739"
     CDS             complement(23112..23912)
                     /locus_tag="PXA71_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HDL5104871.1"
                     /translation="MCQLLGMNCNTPTDITFSFDGFRRRGGLTDHHTDGFGIAFFEGK
                     GVRVFRDNRPGASSPMAEAISQYQIKSLNVIAHIRKATRGDVNLENTHPFIRELWGEN
                     WVFAHNGTVEGVGVCEECHYQPIGTTDSEAAFCRIVSELKEMYPAKPSEKEIFDAVVQ
                     ITSRIAEHGVFNFVLSNGHWMIARCTTNLHYVCRKAPFGKALRDDDVSIDFSQYTKIT
                     DKVTIIATQPLTKNENWTKMKNGGYVFFKDGDVVYEIEGTLPEAQPHV"
     gene            complement(24037..24822)
                     /gene="znuB"
                     /locus_tag="PXA71_000740"
     CDS             complement(24037..24822)
                     /gene="znuB"
                     /locus_tag="PXA71_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HDL5104872.1"
                     /translation="MFDILFPAWLAGVLLAFITAPLGAFVVWRKMAYFGDTLSHSALL
                     GVALGIFLELDPYLAVIGMTILLALLLVWLEQKTNYSVDTVLGIIAHTSLSLGVITIS
                     LLDNVRVDLMSYLFGDLLAINFSDVVFIGIGATLICLILMLFWKRLLSITISPELAQI
                     EGLNVARLRLLLMILTALTIALSMKFVGALIITSLLIIPSATARRFAKTPEKMVLIAI
                     FFSIIAVSGGLLLSSWKDTPAGPSVVICAGLIFLLSLFKKEYH"
     gene            complement(24909..26246)
                     /locus_tag="PXA71_000741"
     CDS             complement(24909..26246)
                     /locus_tag="PXA71_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HDL5104873.1"
                     /translation="MSSLSFDFSEDFRPLAAKMRPRNLAEYVGQSHLIGEGKPLRRAI
                     EAGHSHSMIFWGPPGTGKTTLAEIIAHHLDAEVERISAVTSGVKEIREVIEQAKLNRQ
                     AGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
                     LKPLQAVEILKILQMAIADTERGLGNETLVLEDDVLALLADYVNGDARFALNCLELMV
                     DMAQDSAKGKVLNKSLLTEVLGERQARFDKGGDRYYDLISALHKSIRGSSADGALYWY
                     ARILTAGGDPLYVARRLLAIASEDIGNADPRAMQIAIVAWDCFTRVGAYEGERAIAQA
                     IIYLAVAPKSNAVYQAFNEAKRLAKEAKDYDVPAHLRNAPTQLMKSLGYGEEYRYAHN
                     EPNAYAAGENYFPPELKDTEFYFPSERGMEKQIKEKMAWLKAQDQASPIQRYK"
     gene            complement(26256..26744)
                     /gene="mreD"
                     /locus_tag="PXA71_000742"
     CDS             complement(26256..26744)
                     /gene="mreD"
                     /locus_tag="PXA71_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HDL5104874.1"
                     /translation="MRTNPIFQILVIIAIFVVAFVLEIMPWPVGFQGLRPTWVVLVLI
                     YWALALPDKMSVGTAFIAGIVWDLILGSILGIHALVLSVAIYFVAKYHLILRNLSLWL
                     QSLLVMAYIVLIRFFIFVIEYILHSAEFNSQELLGAVISGVLWSWIFLLMRHIRRQLR
                     LR"
     gene            complement(26744..27799)
                     /gene="mreC"
                     /locus_tag="PXA71_000743"
     CDS             complement(26744..27799)
                     /gene="mreC"
                     /locus_tag="PXA71_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDL5104875.1"
                     /translation="MKPIFAKAPSLGMRLIIAVIFSIMLIISDGRSSLMIQARNLLET
                     AVSGLYYFANTPRSILDGVSGNFIDNNKLQLENNLLKEQLREKSADLLLLDQLKVENQ
                     RLRLLLSSPLRQDEYKKIAEVLAAEMDAYRQQVVINQGRLDGAFVGQPIIDERGVVGQ
                     VISVGEKSSRVLLLSDITHAIPVQVLRNDVRGIASGTGVNNELVIDNLPRSIDVVKGD
                     VLVTSGLGGRFPEGYPVAIVETVENDTKSQFARIVARPLASFDRLRYLLLLWPTAEEK
                     NYSQSLSPAQVREVVEERRNSVNPFERLKQMSNKKTEVQLEAKEEQIENDEINENPAA
                     QPEAENEQNYHTEEGAE"
     gene            complement(27901..>28927)
                     /locus_tag="PXA71_000744"
     CDS             complement(27901..>28927)
                     /locus_tag="PXA71_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HDL5104876.1"
                     /translation="SNDLSIDLGTANTLVYVKGQGIVLDEPSVVAVRQDRMGSLKSIA
                     AVGSHAKLMLGRTPKSIMAIRPMKDGVIADFFVTEKMLQHFIKQVHSNNFMRPSPRVL
                     VCVPAGATQVERRAIKESAIGAGAREVYLIEEPMAAAIGAGLPVHEAMGSMVIDIGGG
                     TTEVAVLSLNGIVYSTSVRIGGDKLDEAIIAYVRRHFGSAIGEATAERIKQEIASAKI
                     ESDDDVKTMEVHGHNLAEGAPRTFELNSRHVLEAIEQPLNGIVEAVKSVLEQCPPELA
                     ADIFERGMVLTGGGALLHNLDRLLSDSTGVQVVVAEDPLTCVARGGGKALEMIDMHGG
                     DVFSIDD"
BASE COUNT         8597 a         6159 c         5520 g         8651 t
ORIGIN      
        1 tattttttaa tcactgtgta ccccctacac actgattgtt ttttgctcat tgtagagtcc
       61 ctctacactg attatttttt actcactgta gaacccctct acactgattg ttttttaatc
      121 actgtgtacc ccctacacac tgattgtttt ttgctcattg tagagtccct ctacactgat
      181 tattttttac tcactgtaga acccctctac actgattgtt ttttaatcat tgtaaacagt
      241 gtttacagtg attatttttt agcctttgaa gcgggccgct tcactgatta tttttcactc
      301 actgtgtaat ccctacacgc tgtctgtttt ttgctcgctg ttaagcccct taacagtgat
      361 tgttttttaa ccttattgta aaagtaattc agctctaaac ttctgcatac ggctcgccat
      421 ttgctctctg tctgctggag ttaataccgg tttctcagta ggctgctcag tcagtttttg
      481 tatagaatga gcagaattat tgttagtctg attttgtgag ggaagatttt ttcctaattc
      541 aaaatagtag ggtttaaatt caccctgctt cgcccgctgg ataagcgtat agagataacc
      601 tttcggtttt ttcacatcct gcttttgaat aatgcgttgt tgtgcttcca gcaaaatagc
      661 ttggcataaa ccgagatcga atcctttcat tgcctgtgca gtgagttttt gttcaagtga
      721 ggttagtggg atttcttgtg gccaagtaat ttcgctaggt tccccagtac agtacttatt
      781 aatatataaa gtactgtaca tctgacttcc ttaatggaag taagtctaaa atcaatgact
      841 tatcttcatt tttagcccta acttccttat tggaagtctg gttttttgag gattttttcc
      901 tgacttcctc atcaaaatcc ctaacttcca tagtggaagt caggatattt tgttgaattt
      961 tgcttaattc ttgttctgtt tgcgatggct gtttatcttt caccagctgc tgttgctggt
     1021 atgtttgata acgactttgc aaacagtcta aatgagagac ataatgccat ttggttttgt
     1081 ctgtcattag actttcaaca atatgatttg ccacaccatt aataaggcta tctttatgtt
     1141 tggtgcattt atctaaaaaa gagagatagt cgctatttaa ttgaattgca tctaaaattg
     1201 gcacaggttc atcgtgcagg atatacacat taccttgtac ataacctcgc tcatcacgca
     1261 ctgtttcaca taaagtaagc cagcgagtaa gacggagtaa atagagtgtt tgagtcacga
     1321 ctttttccga taatttagcc tccgcataag gtctatcgga taacattttg ctgagcgtct
     1381 cataagaggg aaataatcct ccttgaaagg cctgaacatt gcacttaatg agctgccaag
     1441 caaactttgc tcttggtgta aggcagggat cttgtaataa tcgagtaggg actgtttcgt
     1501 gttggttgcc aaaaaatagt aatccatgcc ctgttggctt attcgtactg ctaaacattg
     1561 tttctctcca ctaggataaa agagtttttc tcttgctatt ctccctccta tgactataat
     1621 gcacgggact tcggcaaagt ccttgtaatt cataggatag atatacaaga cccaatatcg
     1681 aatgccccaa agctccaact tcggggcatt tgttttttac ttatgttttg aataccattc
     1741 ggaaactagt ttccaaacaa cagttagatt catattacct tcctcagcaa tcaggcaaag
     1801 aagctctaac ccttcttgtg aatctaggct ttccattcgt tgtttatatc gttgccaaat
     1861 ctcccaaata tgagtggatt cctcatcact tgctgcggct ttccgtccca tcttctcttc
     1921 aatgccgagt aattgacggc gtgctgaaac ctctgatgtc gataaaccga aatactggtg
     1981 cagcatctca atagaggctc ccagtaataa agcccggtct ataatttgtc gctgttgagt
     2041 attagtttgt gcaattgcca gtaatttcca aaaagtctcg tggttaatct ctacttttgc
     2101 aaaagacact acggagttgc taatatccat aatttcatca atactgagat tattgattgc
     2161 ttttagttgc tcttcagaaa atcccatttt taaacaagga tggatatttc cttctttaat
     2221 attgagcagg gcgttaccaa tcaatgcttc atttacggta attggcttaa tcattttctc
     2281 ctccttgttg atgaatatgg cgactgaccc gaatgagacg gaaaagtttg actaaggtaa
     2341 tatcatcaag ctcaaacagg aagttggaat ctaggacaca gttattttca tccttatgtt
     2401 tagctgtctg taacattgaa aggaatgaat agagtgttag aacagacggt gaaagttcac
     2461 tatctgtcgg tttcattgca taagtgtaat ccacaggctg tttcacaaca tgttcaacca
     2521 agtggtcaat gcccacactc tctgcaatat ctaaggcaag ggaatacgcc tctgaacgat
     2581 attgacgagc aggatgaatc aaccaaatat cttcaaccgg ctggcgacct tcgcaagcga
     2641 aagtgagccc attggattct gctcgttgct ctcgctgttc ttgaatgctc attcccggtg
     2701 ttagtccgaa gttatgagca atttgggaga gataatcctc agtttgatta tcttggctat
     2761 ctaacaatgg agcatctagc tgagataagt cagtaatggc gttattctgc tcattgtcac
     2821 tttcgttatc atctattaca tcatcaataa catttttagc tgattctgtg gcaacagatt
     2881 tattttcatt tttgataact ggttcaaatt ttgctgcttg ttgttcctgt ctggtattga
     2941 tttgatcgac tgttttttca actaaattat caatttcttg ttgtttagcc gctatttttt
     3001 tgaatttttg ttcatctaag tcaatatcta gataaagtgt ttcaaaactc acttttccat
     3061 ctaaagcttc aaccattgcc gtaatcaatt cactttggaa ttcttttgct tgaaatggtg
     3121 tagcttcatt aaatttggat aaattttctg accagagcga ttcaaaagta atatcagtat
     3181 caaattgatg ggctgcccat acctcttcgg cattattacg aatagctaat aacttatcga
     3241 tttgagtatg ccctaaacct ttaaatagaa cttctggaat atggggatat agataaagta
     3301 cacatcgctc cattttatta gccaacgtat agtggataat atagccatca ccctctaact
     3361 cagtagctaa ttcccttgct gaaagtgatt tattcaattt cttctcgtaa tattctttcg
     3421 cctgtaaaat accaagagct ttttcaataa atgacaaatc cgcacgggta tcattttcga
     3481 tcaaatgccc gataagtaaa ttgagttcgg cttcgacact gtcggcagta tcaccttgcc
     3541 aaggcttata ttggcaactg atagaccaga atttcggatc tttggtctca gtaaacaatt
     3601 ctttaagtgc ctgaatacga gtattaccgc cgtcagcgat aatgtaaaaa tcttctcccg
     3661 gacggcgggt aatattaggt ttatgatcta acccacgacg ccggattgac tctttgatca
     3721 tctcaaagtt aggattacgg gtttttctag ggttatgttc atacggccgt aacttatcta
     3781 atgtcaccgt aatatattcc tcatcactac tgtaatgagc cggtgtcgca gtctgatagg
     3841 agggtgccgt atttgaaata ggtgaaacat ttagcccctt cgctatagct gctaatcttt
     3901 tttcatcttt tgtcataatc tgtcctaatg tgatgctgtg cttgctctat tctcaaaaag
     3961 tgcaaactca cttctaaaat tggtcattac tgaagtcagc ggtccgtttc gttgtttacc
     4021 gataataatt tcagcagtgc ctttgaaggc ggaatcttca tcataaattt catctcgata
     4081 gatgaataaa atgacatcgg catcttgctc aagtgagccg gattctcgta aatcagagtt
     4141 gatagggcgt ttattggccc gctgttccaa tgagcggttc agctgagata aagcataaac
     4201 agggcaatcc atctctttgg ctaacaactt aagtgagcga gaaatattcg caatctccaa
     4261 attgcggttt tcatagcgtt gcgaagtctg cataagctga atatagtcaa taaaaatggc
     4321 tgacggtttt ccatacttac gggcattttg gcgaacctta gttcttaatt tttgaggagt
     4381 cagactacct tcatcatcaa taactaagcg atttttccag tgttcaagga tataccccat
     4441 tgcagctgtc aattttgccc attcctcatc gtccaagcgg tctgcttgtc gaatattttg
     4501 caatccgact cgggcacgca tagcaagaaa acgttgtaaa atctgatctg ccggcatttc
     4561 catactgtga tagaacacag gagccgactc gaatttttca agtgtatggt aggcaatagt
     4621 ttgagaaaat gcggtttttc ccatcgaagg acgggcacca atcacaatta aatcacccgg
     4681 ttgcccaccg gtagtcgctt catcgatgcc ttgaatacct gtcggtgttc cagtcacagg
     4741 atcaccattt ttagccgaaa gctccatacg agagagcata ctggcaaaaa tatcacttaa
     4801 atctgttgca gatttggtat tgtcagaaag gctgaattca gtcatttttt tctcaacttc
     4861 atcaataact gattcaagtt tttccggtgt tttcacagtc tgtgtctgat cgacaataaa
     4921 ctgccccagt tttaaaagtt gccggtgttt actgtgtaac agaaccacat cagcataagc
     4981 ccccacattg gccgccgaag gggtgttttt tgaaacttct gcaagatagg caaaaccgcc
     5041 gatttccttc aacagatttt tctgttttag gtattcatct aatgtgagaa tatctgcagg
     5101 tttccccacc tcaattaaat ccgtaatccc cttgaataag gcttgatgca caccaaaata
     5161 aaagtcagcc gaattaatct tgccaatgac atcgtcaaag agagtgttat ctaataacaa
     5221 tcccccgatg acagcggctt cagcttctgc tgaatagaga tgggtggttg gtttatttgg
     5281 gttagacata aatcccccaa ctactcagaa aaatgtgatt gtgcaaactg tggcatcagt
     5341 aatgcacaaa gctgacgaat ggtttcatat tcagcttggc tctggcgata gacaggtttt
     5401 gaaaaagttg ccgcttctcg gtatgccaca cgatcaggca cagaaaattc cagtaatgtt
     5461 ttgttttcat caaactcatt ttggaagaga gtatgcaggt agtcggaaac caatttgaca
     5521 tctttggtat gatcaacaca gttaatcatt gcttttaacg gtggcagggt aaaaccaaag
     5581 gctgtaaaag tttctagatc ttgatacata ccaattgtgc cacgaataaa ttctttagct
     5641 gacaagatat gaggaagaat cgggcagaaa agaacatcag cagccaatac cgacatatct
     5701 acagtaatat ctcgagtgcc acgggtatca atgataatga catcatagcc ttcaattttc
     5761 tggagcagta aactaaaacg taaagccccg tccggtgagt ctcttagcat tgggctgatt
     5821 ttatttgacg ggtcattaga ctggatcaag tcaagatttg ggatagccgt tctagaaata
     5881 atgtgggtag gatctacatc tttaaaatgc agaaattcat aagttccacc gggagcttga
     5941 tattccaact cataataaga gcttaatgtg ggttgagtat cggtatcaat aagaagggtt
     6001 cttagaccgt gttctgcaca gaatgcacca atgttagcgg cattcgtact cttggcagag
     6061 cctcctttgg tcgaagcaat agtaatggta aaaggtttgt ttgtaccgtt ttgtaatggt
     6121 ttcataattt actctcttaa caaagttgaa gttaaggagt attggcatta taaactgtat
     6181 atttagagtg agtattattt gaaaggaacg cagttgaatg gtgcctgagg tcggactcga
     6241 accgacacgg ttattcacca atggattttg aatccatcat gtctaccaat ttcatcactc
     6301 aggctgagag tgttttttat tcaatcgcca gtatttccta ttagtctacg caaaagattt
     6361 tgaatccgct gcgtctaccg atttcgccac actggcttaa tttttgcacg attataggga
     6421 aatatgaccg cttgtgcaag cgtaaaaatg ccttttgaaa tcggttgatt taaaaatcag
     6481 cactcaattc atctttacaa aaatagttat gcacatcacc tgtggataac taagtgaaca
     6541 accctgttta taaatattta acctactgat tttactataa ataattttaa aaattggcag
     6601 cgttcaaaat ttcccctaca aaaaatccac tacttgactt attatttttc ctgtttttag
     6661 ttgggtgata atagcctcac cacgttcaat attttctgtt gaagtaagcg ttttaccgtc
     6721 tttagtttgg gtaattgagt agcctctggt caagattttc aatgggctaa gtccatcaag
     6781 tttagtgcat aactcttgaa aatgtcgctg ctctttcagc attatttttt cgatagaata
     6841 agccaagcgt tgcgacattt ttgccaccat cgtttgttgc tgataaagtt gataaggtag
     6901 cgggttgcgt tcaaaccgtt gcgtaatgtt tttccatttt tgctgttttt tgctgagttg
     6961 ctgctccatt tgccaatgga gtttcagctc caattgctta agcatttggg attggcgttc
     7021 aatctgcttt tgcggatgtt ggtgaattaa acggacattt agctctttcc ccacctgctt
     7081 tttggctgca acaagtgcat aaattgcctg ctcgaggcgg tattccatat aatcaaaacg
     7141 ttgctgttgc gattgaattt gtttgcttgg atgctgagca ttcaggcgta aggggagttg
     7201 ttggaaacgg ttaaatttat ggttccaaac tcggtcaaag gctaaattca ctttatcaaa
     7261 ctgatgttgt aattggcgtt tcaattcatt ttgatctctg ctgactaatt ccgcagcagc
     7321 cgaaggcgtt ggtgcgcgca aatctgcaac aaaatcagca atggtcacat cggtttcgtg
     7381 tcccaccgca ctgataatcg ggatttgtga atgataaatg gcataagcga cactctcttc
     7441 gttgaaacac cataaatcct ctaatgaacc gccacctcgc ccgacaatta atacatcaca
     7501 ctcattgcgg cggtttgcca gttcaatcat attcacaata tcttgcgttg cttctttgcc
     7561 ttgcacgaga gccgggtaaa taaccactga taagctcgga tctcgtcgtt gcaaaatatg
     7621 taaaatatct tgtaatgcgg ctccgcttga ggaggtaata ataccaacgg ttttaacaaa
     7681 agtaggaatt ggctttttat gctcttgagc aaacaagcct tgagctgaaa gttttgcttt
     7741 aagttgctca aattgctgct gtaacaagcc ttcgcccgcc ggttgcatac tctcaataat
     7801 gagctgatag tcacctcgtg gctcatagag tgtaacactt gcccgcacca gcacctgcat
     7861 accgttttgt gggcgaaaat tcactcttac atttttcatt ttaaacatcg cacaacgcac
     7921 ttgtgctttg tcatctttta aagtgagata ccaatgcccc gaaactggtt ggctgaaatt
     7981 tgagatttcg ccggttagcc aaatatggct catttccatt tcgagcaaat ggcggacgga
     8041 atagttgagt tgggtaacag ttaaaatatt gctcataata atcaaaaaag cgtaaatgta
     8101 gtagaagtgt aacgagaaat gaaagcgaga ggaagctttt gcagtcaaca agcggttatt
     8161 ttttgctgtt ttttggcaaa taaaacgaaa accctcgatg tgattcacta tcgagggttt
     8221 ggaatgtggt tgcgggggcc ggatttgaac cagcgacctt cgggttatga gcccgacgag
     8281 ctaccaagct gctccacccc gcgtctgatg aggctataat atatcaattt gacataatga
     8341 caagtaaaat catacaaaat tgctctaagt gatgtaaatt acaacagata tagtatcaaa
     8401 atacgcttat tgttgtaaaa acaatcaaat tatattctgg ttttattttg tcgctgtttt
     8461 tgctattctt ctgtttattt ttcacatttt attaacgata taaggatatt cgatgaattg
     8521 gaaagcatat aaaaaagcta ttgcggcagc tagcgtggta gcgattgcaa cggtattagt
     8581 ggcgtgttcg tcttcaggcc aaaaaggcaa aacaacctct tatgatgcgg aaaaagctaa
     8641 atttggagca aaatataatg gtcgtcactt tatgccttat ggcacacatt ttcaagctgg
     8701 acgtttagga ttaaatgctg ctcctgttaa tcaactagac tttttacagc agctttctaa
     8761 tgtcagagcc tatagtagct tggcagattc ttatgctatc gcttacggaa aaatcagtcg
     8821 ttggatctca tcgggcggta atattaatga tttagcaaaa tatggtatta gtactcgttt
     8881 aatgcgtggc gaagatggct accagaatgt gttaatgaca gggtattact cgccggttat
     8941 caaagcccgt agaacgcctc aggggcaata ccaacacccg atttatgcga tgccgtctag
     9001 caaacgtttt tcacgggcgg aaatttacgc aggagcattg caaggtcagg gcttagaact
     9061 ggcttatagt aattcaatgc tcgataactt cttattaggt gttcaaggta gcggttacgt
     9121 tgactttggt gatggtcgct taaactattt tgcttatgca gggcaaaatg gctttaaata
     9181 tgccagcgtt gggcgtttat tagtagaaga tggcgaaatt ccgaaagaga aaatgtcagt
     9241 gcaggctatc cgtgaatggg ggcaacgtaa ccctagccgt gttcaaggtt tgttggagcg
     9301 taatccatcg tatgttttct ttaaaaacga tcctaccggt caggtaaaag gctctgccgg
     9361 tgtgccgtta gtaccacttg catctgttgc atcagatcgt agcattgtgc catcaggtag
     9421 cgtgttgttg gtcgaaatgc cgttgattga tagcaaagga aattggaccg gcaaacacga
     9481 aatgcgttta atggtggctc ttgatgttgg cggtgcagtg aaaggccatc acttcgattt
     9541 atatcaaggg attggcgata aagcaggcca tatcgcaggt ttaatgaaac attacggccg
     9601 tgtttgggta ttaaattaat acagggtaac tatgttaaaa aaactatctg ccatattctt
     9661 acttctaccg agcgccgtgc ttgcaaataa tttgcaaaat ataaccgctt caactgagcc
     9721 taaatataaa atctcagaaa tagatgtcag aattttgata cgccagctca ataatattga
     9781 gcaatgtatc tatcctgagt tagctaaacc cggttaccag caaatctacg caaattggaa
     9841 tctggctgaa aatttaacga tgcaatattt tgaatatcag cttctaaaag agttgctcgg
     9901 agaggaaaat cagaaactga tgcaaaatga tacgctttct accgagtatt tccatttact
     9961 gcattctcgt ttaaatcacc aaaaagcaaa tgtagatccc gaaaaatgcg atacatttaa
    10021 acctagatat aaagagattt ataaaagtat ggaaaatgca ctcactaaga aaaatcaata
    10081 gtaaaaaact cgcagttttc actgcgagtt tcttttatct ttcgttatga atttctaaat
    10141 tggtggcttg ttttgccgcc tctgcttttg ctttatcgtt tcgagatctt gctatactgt
    10201 ctaaatagca tttatctaca tcacctgtaa tatattctcc tgtaaataca gagtcatcaa
    10261 agcgatgaat agtcggattt tccagttgaa tagacttata aagtgcttca aggtcttgga
    10321 aaatcaattt atccacccct atcatctgtg caacctcttc cactgagcga tcataagcca
    10381 ctaattcttc acaagtcggc atatcaatgc catacacatt cgggtagcga atttccggtg
    10441 cggcagaggc aaaataaacc cgttttgcac cagctgctcg tgccatttcc acgatttgtt
    10501 cagacgttgt acctcgtaca atagaatcat caaccagtaa cacgcttttg cctttaaatt
    10561 cagaggcaat cgcatttaat ttacggcgaa ccgagctttt acgctgtgct tgccccggca
    10621 taataaaagt tcgagctaca tagcggtttt taacaaaccc ttgacgatag ggtttataca
    10681 acatattagc aatacgtacc gcaatatcat ttgaggtttc aggaatcggg atcaccacat
    10741 caatatcatc gataattcgt ccccattcac gtttaatttt ctcacctaat aattcgccca
    10801 tatgcactcg tgcagaatat acagaaacgc catcaatgac ggaatcagga cgggcaaaat
    10861 aaacatattc aaaaatacaa ggattcagtt ttggattatc ggcacaaatt tgcgaatgta
    10921 attgcccatc aaaggtaaca taaatcgctt cacccggcag cacatctcgc acaaattcaa
    10981 accccactac atcaagagcc acactttccg aagcaaacat atattcggtt ttaccctcga
    11041 tttcacgttt acccagcact aacgggcgaa taccgaatgg gtcacggaaa gcaaccatac
    11101 cgtgtccgat aatcatcgca atgcaagcat aagcaccacg aatgctatca ttggttttac
    11161 gaaccgtttc aaagatattg tctgggctta aatgctgagt ggaatagaga tctaaaaagt
    11221 aagcaaaaat attaagaagg gattcagaat cagaattagt gttcacatgg cggcgggctt
    11281 cgttgtataa gcgagcttta agttccgcat tattagttaa attaccgttg tgaactaagg
    11341 taataccgaa aggtgaattg acataaaatg gctgggcttc agacacactt gagctacctg
    11401 ctgttgggta gcgaacgtga ccaattccaa cattgccttg taatctcacc atatgctctt
    11461 gctggaaaac atcgctgact aagccgttag ctttgcgtaa gcggaaacga ttttcatcgt
    11521 ctatggtgac gatacctgcg gcatcttgtc ctcggtgttg aagtaatgtt aaaccatcat
    11581 aaatcgcctg attcaccggc gaattcccaa taataccgac aatgccgcac atatagaaaa
    11641 acctctttat ttagtcgtgt ttaaaaaact ggaatttgct tgtaactgtt caaagaacca
    11701 cttcacaata aagtcaaaat gcggaattaa tagcgatgat ttccataatt ccgtttggct
    11761 tgcttgggta aaggtatcta agaaaaataa aatagccgac acaattaaaa taccacgcaa
    11821 tgccccaaaa gcaccgccta aaatacggtc ggtgatagac attccgctca aatcaatcac
    11881 tttgcctaat aaaccgttga tcacaccaca aacaattaaa gtcaaaatga acagaatcgc
    11941 cgctgcaata ccattgcgta aaaattctga attttgcaaa taaaccgaat taatttgtgt
    12001 gagataaccg cttaaataag gataaaacga gcttgccaca aaaaaggcga ttacccaacc
    12061 aagtagcgat aatgcttcat tggtaaaacc tcgccataaa ctgataagca ctgaaaaagc
    12121 aatgattccg ataacaatta aatcaaccat aacacacctt aaagcgtaaa gctctcctat
    12181 tctacaaaaa aagaaaacgt ttgcgtagca ctatttcgct aaaaataagt gctttatgca
    12241 aatacaagcg gttaaattcg gtaaaaaatt tacacaatcc gaccgcttgt aaaacctagt
    12301 ctgcaatata accaacatcg tccaacgttg gattatttgc tccttgttta gccagctcat
    12361 cgcaaatctc attttcacga tgtcctgaat gccctttcac ccaactccat tcaatttggt
    12421 ggcgttgaat ttcttggtct aaagcaaccc ataaatcttt atttttaact ggctttttat
    12481 cgctggtttt ccagtcattt ttcttccagt taaaaatcca tttttggatc ccgtttttca
    12541 tatattggct gtcactattg agttgcacct tacaaggctc ttttagcatt gctaaagcct
    12601 caatcaccgc ccgcaattcc attcggttat tggtggtttg aaaatagcct ttgctcacgg
    12661 ttttttcgta cccgttataa cgcagcaaaa taccaatccc ccctttgccg gggttgccta
    12721 aacaagaacc gtctgtaaaa atttcaacta atttcatcat cacgctttga aaataaaagc
    12781 cccaaagcat taactttggg gcagctttta ggctaaattc taaaagttat cagaatggag
    12841 atcaactgat tatttttttc caagttgtgg aatcacgcta ttattagccg ccaataaacc
    12901 tgcatcggta taaactgcta atttaccacg ggtatcgaca atatctaagt tacgcattgt
    12961 taattgaccg atacgatctg ccggcgtaaa cggtgcatct tctacttttt ccatacttaa
    13021 acgttctgct tcgtaggtta agtttggcga ttcagtgtta agaatagtga aatcgttacc
    13081 acggcgtaac tcaagcgtga ccgtaccggt aatcgctttt gccacccaac gttgagccgt
    13141 ttcacgcaac attaaagctt gcgggtcaaa ccagcggcct tgatacaata aacgccctaa
    13201 acgtaatccg ttaatgcgat attgctcaat cgtatcttcg ttgtgaatac cggtaactaa
    13261 acgctcgtaa gcgatgtgta ataatgccat tcccggtgct tcataaatac cacgagattt
    13321 cgcttcgata atacggtttt cgatttggtc tgacattccc aaaccatgtc tgccaccaat
    13381 gcggttagcc tccataatta attcaacggc atcatcaata cgtttaccgt ttaacgccac
    13441 cggcacacct tcttcaaagg taacagaaac agtttccgct ttaatttcaa ctgattcgtc
    13501 ccagaatgcc acgcccataa tcggttttac gatcttcata ccggtgctta attcttctaa
    13561 atctttcgct tcgtgggttg cacctaacat attcgagtct gtagagtagg ctttttccac
    13621 cgacatttta tagtcaaaac cgttttcgat taagaattta gacatttcca agcgaccgcc
    13681 taattcatca atgaatagtt ggtctaacca cggcttataa atttttaatt ttggattggt
    13741 taataaaccg taacgataga aacgctcaat atcgttacct ttaaaggttg aaccatcgcc
    13801 ccagatattc acatcatctt ctttcattgc cgcaaccaac attgtgccgg ttaccgcacg
    13861 accaagtggc gtggtgttga aatacggaat accgccggtt gaaatatgga aagcaccgca
    13921 ttgaattgcg gcaatgcctt cgtgagctaa ctgttggcga cagtcgatta atcgtgcatt
    13981 ttcagcccca tattccatcg cttttttcgg aattgcgttg taatcatctt catccggctg
    14041 acctaaattt gcggtgtacg cataaggcac tgcccctttt ttacgcatcc ataacagtgc
    14101 tgctgaggta tctaaaccgc ctgaaaaggc gatacccact ttctgcccta aaggtaaagc
    14161 ttctaaaatt gttgctgaca tacgaattcc tataaatttt gaaagtaaaa atattcaaac
    14221 gcaaacgctt acgttcaagc aaaatattct agctgaaaag tagtaaaaat tcatctaaaa
    14281 tttagcccga tgatttgcaa attttttgtg aaatttgacc gcttataatt tactgaaaac
    14341 ctaaaagcaa tagagaaaat cagaatgaaa aaactactcg taatccgtaa tgataaaatt
    14401 ggggacttta tggtctgctt tccggcattt gctatgttga agcaatcaat gccgaatgtg
    14461 gaaattaccg ctcttgtgcc aagttatact gctccacttg ccgagctttg cccttctatt
    14521 gataagatta ttattgatac ggcgaataaa aaagataaaa atgaatttaa ccgtatttta
    14581 caagcggtta aaaatgagca atttgatgcg gttatttgtt ttgtttcaga ctggcataat
    14641 gccaaactca cctggcaaag tgggattaaa taccgcctcg ctccagcaac taaattattc
    14701 caatttttat ataaccaccg tttaacccaa cgccgttctc aatcagcaaa agcggaatcc
    14761 gaatataatt tggatttagc ccgtgctttt ttaagcaaac acaatatacc gattgttgaa
    14821 cctcacacgc catacttaag tgttgaacag caaaccgtcc aggcacaaaa agcaaaatta
    14881 tgcgaacaac tcaatattac caccgttaaa aagtgggtat ttgtgcatag ttcaaccggt
    14941 ggttcggcaa ataatttatc tatagaacag tatgcagagt taattcaagg tattttggca
    15001 gaatttgatt gctatgtggt actcaccgca gggaaaggcg aaagcgaaaa agctcagcag
    15061 ttagctcaac aaatcaatca caacaacgtg gtggtttatg ataaaaatga ggggttacaa
    15121 gattttacac attcgcttgc gtgtgcagat ttgtttattg ccggctcaac cggtccgtta
    15181 catattagtg gggcgttaaa tattccaact attggcttct acccgagccg actttctgcc
    15241 attccacgcc gttggaaacc gattaatgat gcgaataaac acattgcatt ttgcccaccg
    15301 tctgataaag cctcacaaat gaatttaact ttaatttcta tttctgaggc attaaaaacg
    15361 atagtaccgt ttattcggag aatgtggaat actccctctc tctgataaaa ttgctaaacg
    15421 caattttatc tatctctctc ccactagagg gagagagtac tgaaaagcat catttccgag
    15481 tacgattcca caaatccgca tattttacga aagtagaatg tgccgaaaga actgccaata
    15541 aaaatccttg cttgccatct aaaaaaccgg cttttaatag atacattttc acaaaacagc
    15601 cgatggcgtg agtcacgcca tcaaataagc tggctgtttt gcctgcattt gcccgttgga
    15661 ttgcccacgc tttagcgtaa cttgccgatt ttaccaaata gtggtgaata tctttatagg
    15721 tgaaatgcag caaatcgcct tgtagtttct ggatttttgc ctcttttggg taatgtactt
    15781 tttcgtgaac caattcatca ccatatttgg caaattccgt gcgatacaat ctcaccacac
    15841 aatccggata ccaacccgag tggcgaattt gtttgccaaa tacttcactt aagcggctga
    15901 ttttgtaaac ggtatttttt tcatcatttt tgaccgcttg taaaatagat tgcttcagtt
    15961 cggctgtcac tcgctcatct gcatcaagcc aaagtacata atcactggtc acatattgtt
    16021 gagctaactg acgctgttta ccaaagcctt gccaatcggt gttagtgtag aaccttgcgt
    16081 tgtattcagc agcaatttgt ggtgtttcat cagtactgcc actatctaaa atcacaattt
    16141 catctaccca atcttttact gtgtcaaggc aagcccgtaa atcttgagct tcatttttga
    16201 caatcatcgc aacacttaat gtcggcatag tttatccttc tctctttttg tcgtgtgttt
    16261 ttctgctatt cgttgcattt tactttaaaa atagtggttt ttgtgctatt ttctacgcca
    16321 aattttatca acaaaacaaa ttaacggaaa aagaatgtca attacattaa caaccaaaca
    16381 aaaacaattc ctaaaaggct tggctcatca tttaagccca gtggtgatgc tggggggtaa
    16441 cggcttaaca gaaggcgtgt tagctgaaat cgataacgcc ttagaccacc acgaactgat
    16501 taaagttaaa gttgccgggg ctgatcgtga aaccaaacaa ttaattattg atgccattct
    16561 gcgtgaaact aaagcggctg aagtacaaac cattgggcac attttagtgc tttaccgcca
    16621 aagcgaagag aaaaaaatca gcttgccaaa agcaactaaa gcgatctaat tgcaaaaata
    16681 tgtttaaatt caaccgcttg tattcaagcg gttttttata ggactttcta tgtttaaaaa
    16741 attctctctt tatacccttg caatgttgct cattcctgtg gtgacttggc tggcaaattg
    16801 gcactggtct ctggcaattc aatacgctga atttgatttc gactactttt tatatttaat
    16861 caccgaaacc ggctccgtac cttatgccat catcacctgt gtggttttcg ccttattact
    16921 ggcgagggtg gttcgcaaac gctactcttt aatttttgtg attaccgtgt gtgtcgcttc
    16981 aatggtagcc actcaagcaa tcaaaacagc gatgaaatca acctttcaag agcctcgtcc
    17041 atttgtcact gctcttttcc aagataaaac agacgatttt tatcaattaa cacgcgagca
    17101 acgtgggctt gccgtaatgg aaaaaatcgg tgcaaatcaa aattttgtta ccgctcacca
    17161 agccaaagaa gtgggctatt ctttcccatc aggccacact atttttgcgg tttcttggct
    17221 attattggtg gtaggtttct gccgtaatat gcgaggacaa gcggtcgttt tggctcattt
    17281 ttttgcaatc agttgggcgg cgttaatgct gattagccgc ttgcgtttag gtatgcacta
    17341 cccgattgat ttattcacca gtagtttaat tgcgtttcta atcaatttag ccttatttgt
    17401 gtggtttgtg ccttggttgg aaagtaaaaa atggtttgct aaaaagcctt aattggcaat
    17461 ttagccaaat caatatacaa tacaaattat tgaataagta cctaaaataa ggagcttaga
    17521 atggaaatgt cgatagaaaa aatagctgaa ctattaagcg ataaagaaaa agatgactat
    17581 ccgtttagta ttgaggaaag acaatttgcc gcccaggcta gtgctgatac ttgggaggca
    17641 atcttaaata acactattca accttttgac ttcaaaaaat aggcttgcta tgtatcaagt
    17701 ttttattgca gaaccaaaag acccaaactt agagaaaggc ttattgaaac acttcattaa
    17761 gtcttatctt actcaagaag aactcgattt cctgcataaa attctcacta atttacccaa
    17821 catcagacct ttttggggcg ataccggtta caaatatatc gtcattgata atgtttactt
    17881 cttgtatgaa gtttccgaaa gtgaaacgaa agtcattcta cttggcacca aatttaataa
    17941 taaacggaaa acttttaatt ttgcgaatac gaaaacccag caaaaatcaa tgaagaaatg
    18001 gattaatgat ttagcaattt ataaaccgca taaaatcaat caatcgcaat aagagagcgt
    18061 aattatggca atttattatg gcttagatgt gggcggcaca aaaattgaat tagccgcttt
    18121 taatgaaaaa ctagaaaaac tacacagcga acgtgtgccg acaccgcaga caaattatca
    18181 agattggctg acggcaatta aaacgctggt tgagactgcc gatacaaaat ttgacgaaaa
    18241 aggcactgtc gggctgggca ttccgggctt tgtaaaccgt gaaaccggca ttgcggaaat
    18301 taccaatatt cgagtggctg acggcaaaac gattctgaaa gatttagccg aatgtttagg
    18361 gcgtgaagtg cgtgccgaaa acgatgctaa ctgctttgcc ctgtctgaag cgtgggacga
    18421 aagtaataag ccttattcca ccgtattagg gttgattatc ggcaccggtt ttggcggtgg
    18481 ttttgtgttt gacggtaaaa ttcattcagg cagaatcgga atggcaggcg aagttgggca
    18541 tatgcaactt aactaccacg cacttaaatt gctcgactgg gataaagccc caatttatga
    18601 atgtggttgt ggcaaccaag cctgtttaga cacctatatt tcagggcggg gttttgagtt
    18661 actgtttaat gatttagtag gagaaaaaat ctcggcgaaa gcgattatcg aacgcttcta
    18721 ccaacaagaa accaaagtgg tggcatttgt cgaaaaatat attgagctaa tggcaatcag
    18781 tatcagcaat ctgattacga ttttagatcc ggatatgatt gtattcggtg gcggtttatc
    18841 caactttgat tatatctacc aagctctacc aaaagcatta ccaaaacact taatgcgttc
    18901 agcgaaagtg ccggtcatca aaaaagcaat tcacggcgac tcaggtggca ctcgtggtgc
    18961 agcagcatta ttcttaaagt aatgaacaaa tttgagagag ggcaagcggt catttttaat
    19021 aaaaatattg cagccctctc ttttaatttg ccttactgct tagtttcttc cggtaattta
    19081 tataactgat ttttatataa ataactgcca agcaatgcgt gtgctaacgc ctctttttta
    19141 aacgattccg gctgttcttt aggggtgagt ttatagttag ctttatcgta gctaaatcct
    19201 tctatcggta aatttggtcg cattaccacc acatcatttc cccgcatcat cgcctgtgtc
    19261 gcatcatatt gcataaaggc acggtttggg tcaatgtctt gcgttaaatc ataccctatc
    19321 atcggatatt gaccacttat tcccgccaca gaaagtaatg ttgtcggcat atcgagctga
    19381 ctcactaaac ggttatccgt tcttggctga atgtgttcgc ctaataaaag tgccggaata
    19441 tggaagtgtt gaattggcac taaatgctcg ccaacggctc ttgaatcgtg atctgcaatc
    19501 actaaaaaca ccgtatcttg ccagtactct gattttttcg ctaactcaaa gaaatgcccg
    19561 atagcataat cggcatattt tgccgcatta tggcgagtct gcttcggttg ttcatagagt
    19621 tcaattttgc cgtccggaaa ttcaaacgga tcgtggttac tggaactgaa taccaaacta
    19681 aaaaacggtt tacctgattt gtgcagttga ttaaaagttt catttgcctt atcaaacaga
    19741 tcttcatcac tcacgcccca agttgcggta aatttagggt ttttataatc tttttcatcg
    19801 ataatttgct ggaaaccatt accgtagaaa aagctcgcca tattatcaaa atgcttctcc
    19861 ccaccataaa taaaggaagt atggtatcct tgacgtttta ataattcggc aatactaaaa
    19921 aagttagttt ggcttttcgt cagttttacc acagatcttg ccggtgttgg tgtaaaacca
    19981 gccgttaccg cttcaattcc tctcaccgaa cgagtacctg ttgcataaag attggtaaaa
    20041 taccagcctt gttctgaaag tttatctaaa tttggagtga gatttttccc tcctagcgaa
    20101 ccgacaaatt gagcccctaa actttcttct aagataatca caatgttttt aggctttcct
    20161 tgataagtcg ctttattttg cgtgagggtg ggaatttcat ctgaaatata atctgaagct
    20221 ggtcgattac gaacctgctt aacaatgttg aacatttcct ccacagacat ttttccatac
    20281 tgttcggaag atttatcttc atctttcaat tgctgaaccg cataaagcac ggaataacct
    20341 gaatttagca ccagtgaatt gacaagcgga tcgcttgaaa atgccaccat tgccggatta
    20401 atccctcgat gggcaaaact ggaacgccca ccaacaaaaa ctattgcagc aaccaataaa
    20461 gccagtagcg gacgcatttt ccagctcggg aaatgcaaat ttttggttgc ccaacccgat
    20521 aatttccaat aaatgatgag agaaatcatc gcaatgccaa tcccacaaat aacagcccat
    20581 aaatgtccgt taatcagcat tgtgaacact tctctcggat ggaccaaata ctcaatgaaa
    20641 agacgatttg ggcgaaggtc aaaggtttca ataaaattcg gtgtggcgac ttccataaaa
    20701 agaataaata cactaccgac agttagccaa attcttaaaa cagtctgcca aatcgaaccc
    20761 agtacatttt tatgaaaaca caacacgcta aataatgccg gtaagccaaa tagccaacat
    20821 agcgaagata tatcaatgcg aataccttgt agtattaatg gtatccatcc atcaacagcg
    20881 gatactcgat cagattgcca aacgcctaac actaaacggg ataaggtgag gataactaaa
    20941 ttaatcccaa caaatagtag gattggaaat agcacagttc ttgattgact gcgttggtac
    21001 attttgaatc tccttttaaa aaaatatcgg catattataa ttgaataatg acaggatcgc
    21061 ctacttttat cacaccactg ttttgtggca caaggtgaat accgaacacc ggcttacctt
    21121 tttcatcgca atgcttttct tttaaggttc taaacggctc cgatttgggg tctaactcaa
    21181 gcgtgtttaa atcccgtgta atcaaaatgc aacgagtaca taatgccgct ttggtaaata
    21241 gcacttcgcc aatttgaact tgttgccact gctcttcttc aaatgccaca ttgccatcaa
    21301 tcacaatatt cgggcgaaaa cgagccattt cgagtggaat cggcgaccat tgttgcactt
    21361 gctcaagcga ttttagagac atcaaactca ccgggttgct atctgcaaaa ctcattgggt
    21421 gatcggcaaa attcgcaaca attcgttggc tttgcgagcc aagccaacgt agttgcacag
    21481 ccctaccaaa aatttcactc agccattgat tgaccgcttc tgccgccact ttggcattaa
    21541 aatgtgttcc ccacacttca ctactctgct cttccacaaa atcttggtaa agtgcaacgc
    21601 atttttgacc gcttgtatgg gtaatcatta cccctgtcgc aatcgggaaa gccgctagac
    21661 ggtataattc cggatcttta cgggcagtaa taaatttgcc gttaggctcg gctagcataa
    21721 attcacggtc aaaatttaag cctttcggtt caacaaatgc ctgtgaaact tgaatagctt
    21781 gagttgattt tatcgggtaa atattgagct cggtaacttg catagaaaat cctccatttg
    21841 gaaataggat aacaatacct gcaagcggtc gaaaagtaaa aggaatttgc aaatcccttg
    21901 tgagaacggt aaacttgagc aacttttaca gcaataggtc agcaacaatg gcaaagaaac
    21961 ccactcaaga ttttgaaagc acacttaaag aattagaagc aatcgttacc catttggaat
    22021 ccggtgattt accgcttgaa gaagccctca acgaatttga aactgcaatc aaattagtgc
    22081 aacaagggca agaacggtta caaaaagccg agcaacgtat tcaaatctta ttaaataaaa
    22141 acgatactgc cccacttagc gattacgaaa gagaataatc acaatgagct atctattagc
    22201 aaccgatctg actcacctgc aacaacggat taaccatttt ctcgctgaaa aattaaaaac
    22261 aacggatagc gttggttcgc ctttagtaga agcaatggct tatgcggtat tgctaggcgg
    22321 taaacgggtg cgaccgtttt taatctatgc caccggcaga atgcttggtg tgccgttgga
    22381 aaaattagat catagtgcgg cggcaatgga ggctattcac gcttactcgc tggttcacga
    22441 tgatttaccg gcaatggacg atgatagatt acgccgtggc aagccaacct gccatattgc
    22501 ctttgatgaa gctaccgcta ttttagccgg tgatgcgtta caaagttttg cgtttgaact
    22561 gctggcaacc gatccgcatt tgaccgaccg agaaaaagtt gttcaagtta cagaattggc
    22621 aaccgcttcc ggtgcaaaag gaatgtgctt agggcaaagt ttggatttga ttgcggaaaa
    22681 taaagcggtg agcttggaag agcttgaatt aattcatcgc aacaaaaccg gggcattgat
    22741 tctatcatcc gtgatgatgg gattaaacct ttccgaatat tcgcaaaatg tagccataaa
    22801 acaaccgctt gtaaactatg ccaaagcgat tggcttagcc tttcaggtgc aagatgatat
    22861 tttagatgtc attggcgaaa cagataaaat cggcaaaata gtgggttcag atgaacactt
    22921 aaataaaagc acatacccga aattgttggg cttagacggg gcaaaacaaa aagccgaaat
    22981 gctttatcaa accgctctcc attcgctgga acagttgcct ttcgatacca ccgcattaaa
    23041 agagttagct aattttattg ttaagcgtga aaactaagaa aaaacctagc cgaagctagg
    23101 ttttttagtg attaaacgtg aggctgagct tccggcaatg tgccttcaat ttcatatacc
    23161 acatcgccgt ctttaaagaa aacatagcca ccgtttttca ttttggtcca gttttcattt
    23221 ttggtaagtg gctgagtggc aataatcgtc actttatcgg taattttggt atattgacta
    23281 aaatcaatcg acacatcatc atcacgcaag gctttgccaa acggtgcttt acggcaaacg
    23341 taatgcagat tagttgtaca acgggcaatc atccaatgac cgttggataa aacaaaatta
    23401 aataccccgt gttccgcaat tcttgaggtg atttgcacca cggcatcaaa aatctctttt
    23461 tcgcttggtt tagccggata catctctttt aattccgaca caatacggca aaatgccgct
    23521 tcggaatcgg ttgtaccaat cggctggtag tggcactcct cgcatacccc aacaccttcc
    23581 actgtgccgt tatgggcaaa cacccagttc tcgccccata attcacgaat gaaggggtgg
    23641 gtattttcca aattcacatc accacgcgta gctttacgaa tatgtgcaat aacattgagc
    23701 gatttaattt gatattggct gattgcttct gccatcggcg atgatgctcc cgggcggtta
    23761 tcacgaaaaa cccgaacccc tttgccttca aaaaaggcaa ttccaaaccc atcagtatgg
    23821 tgatccgtca gcccaccccg acggcgaaat ccatcaaaag aaaaagtaat atcggttggc
    23881 gtattacaat tcattccaag taattgacac ataatttgct tcttaaaacc aaataattta
    23941 caacaaaaaa taattgttac atttaaacag attgattaga aaattcaatg ctctttacat
    24001 aaaaatctta tgctttattt tcatacatta tgctgtttaa tggtattctt ttttgaatag
    24061 cgataataga aaaatcaagc cggcacaaat gactaccgaa ggccctgctg gtgtatcttt
    24121 ccaactggat aacaataaac cgccactgac tgcaataata ctgaagaaaa tcgcaatcaa
    24181 caccattttt tcaggcgttt tagcaaagcg tcttgccgta gcagacggaa taatcagcag
    24241 tgaggtaata attaaagcac cgacaaattt catacttaat gcgatagtta atgcggttaa
    24301 aatcatcagc aataaacgta agcgagccac atttaatcct tcaatttgag caagttccgg
    24361 gctgatggta atcgacaaca accgcttcca aaacagcatt aaaatcaaac aaattagggt
    24421 tgctccgatt ccgataaaca ccacatcaga aaaattaatt gccagtaaat cgccgaataa
    24481 gtaagacatc aaatccactc gtacattatc caacaaacta atggtaatta ccccgagaga
    24541 aaggctagta tgggcgataa tccccaacac ggtatccacc gaataattgg ttttttgctc
    24601 caaccaaacc agcaataatg caagaagaat agtcattcca attacagcaa gatacggatc
    24661 gagttctaaa aaaatcccta atgccacgcc gagcaatgca gagtgcgaaa gtgtgtcgcc
    24721 gaaatacgcc atttttcgcc acaccacaaa agcccctaga ggtgcggtaa taaaggctaa
    24781 caaaacaccg gcaagccaag ccggaaataa aatatcaaac atattggttc tcaaaggcaa
    24841 gtaaaacaag cggttatttt ttcggaaaaa tttgcaaatt ttttgctgat ttagaccgct
    24901 tgtcatattt atttataacg ttgaatcggg ctggcttgat cctgtgcttt cagccacgcc
    24961 attttttctt taatctgttt ttccattccc cgctcacttg ggaagtagaa ttcggtatct
    25021 ttcagctcag gcgggaaata attctccccg gcggcataag cgtttggctc attgtgggca
    25081 tagcgatact cttcgccata gcctaaagat ttcattaatt gagtgggagc attacgcaaa
    25141 tgcgccggca catcgtagtc ttttgcctct ttagcgaggc gctttgcttc attaaaagct
    25201 tgatagaccg cattgctctt tggggcaact gccaaataaa tgatcgcttg ggcaatcgct
    25261 ctttcacctt cataagcccc cactcgggta aagcaatccc aagccacaat cgcaatttgc
    25321 attgctcgag ggtcggcatt accaatatct tcagaagcaa tcgcaagcag ccttcttgcc
    25381 acataaagcg gatcaccacc ggcggttaaa attcgggcat accagtataa tgctccatca
    25441 gccgatgagc ctcgaatgga tttatgtaac gcagaaatga gatcatagta acgatcaccg
    25501 cctttatcaa aacgagcttg tcgttcgcct aacacttcgg tcagcaaact tttattcagc
    25561 actttccctt tagctgaatc ttgtgccata tctaccatta attccaaaca gttcaaggca
    25621 aaacgggcat caccattaac ataatcagca agcaatgcca gtacatcatc ttcaagtacc
    25681 aaagtttcat tgcctaaacc acgttcggta tcggctatcg ccatttgcaa aatttttaga
    25741 atttcgaccg cttgtaacgg ctttaaaata taaattctgg ctcgggaaag cagtgcgtta
    25801 tttagctcaa aagagggatt ttcggtagtc gcaccaataa aaataatagt gccgtcctca
    25861 atatgcggta aaaacgcatc ttgctggctt ttgttaaagc ggtgaacttc atccacaaaa
    25921 agcaacgttc gtctgccggc ttggcggttt aatttggctt gttcaatcac ctctcggatc
    25981 tcttttacac cgctggtcac agcggaaata cgttcaactt ccgcatcaag atgatgggcg
    26041 ataatttcag ctagggtcgt ttttccggtg ccgggcggtc cccaaaaaat catagaatga
    26101 ctatgtccgg cttcaatcgc tctgcgtaac ggtttgcctt cgccaattaa atgagattgc
    26161 ccgacatatt cagccaagtt tcgaggtcgc attttggctg caagcggtcg aaaatcttca
    26221 ctaaaatcaa aagacaaact actcatttta acctcttaac gtaaccgcag ttggcgacga
    26281 atatgacgca ttaataagaa aatccaagac caaagcacac cactgattac agcacctaac
    26341 aattcctgtg aattaaattc ggcactgtgt aaaatgtatt caatcacgaa aataaagaaa
    26401 cggatcagca caatatatgc cattactaat aggctttgta gccatagcga taagtttcgc
    26461 agaatcagat ggtatttcgc aacaaaataa atcgccaccg ataacactaa ggcgtggatg
    26521 cctaaaatcg agccaagaat cagatcccag acgatgccgg caataaaagc cgtccccaca
    26581 ctcattttat caggtaatgc caatgcccaa taaattaaca ccaaaacgac ccaagtaggg
    26641 cgtagccctt ggaatcctac cggccaaggc ataatctcaa gtacaaaagc aaccacaaaa
    26701 atcgcaatta tcacaaggat ctgaaaaatc gggtttgttc tcattattcc gctccttctt
    26761 ccgtatgata gttttgttca ttttccgctt ctggttgtgc tgccggattc tcatttatct
    26821 catcattctc tatttgttct tcttttgcct ctagctgcac ttcagttttc ttgttagaca
    26881 tctgttttaa acgttcaaat ggattcacgc tattacgtct ttcttcaaca acttcacgta
    26941 cttgcgctgg cgacaagctt tgggagtagt ttttctcttc cgccgtcggc caaagcagta
    27001 ataagtaacg taagcgatca aatgaggcta acggacgagc aacaattctg gcaaattgac
    27061 ttttggtatc attttcaacc gtttctacaa tcgccaccgg atatccctca gggaaacgtc
    27121 cacctaagcc tgaagtcacc agcacatcac cttttaccac atcaatagaa cgaggcaagt
    27181 tatcaatgac caattcatta ttcacccctg taccactggc aatgccacgt acatcattgc
    27241 gtagcacttg aacaggaata gcatgagtaa tatcagagag caataaaaca cggctagatt
    27301 tttcccctac agaaataact tgtccaacaa cacctctttc atcaataata ggttgcccga
    27361 caaaagcacc gtctaaacgc ccttgattaa tcactacttg ctgacgataa gcatccatct
    27421 cagcagctaa tacttcagca atttttttat actcatcttg ccgaagcgga gaactcaata
    27481 acaatcttaa acgctgattt tcaaccttta gctgatcaag caataataaa tcggcacttt
    27541 tttctcttag ctgctctttt aataaattat tctcaagctg taatttatta ttatcaataa
    27601 aattgccact taccccatct aaaattgaac ggggggtatt agcaaaataa tataatccac
    27661 ttaccgcggt ttctaataga ttacgcgctt gaatcattaa agagctacgc ccatcggaaa
    27721 taatcagcat aatagaaaat atcactgcga taatcaggcg catccctaaa gagggagctt
    27781 tagcaaaaat aggtttcatt agagaaatat atgtgaattt attgggaatc tataacgaaa
    27841 attgacaata gaatcaatcc attgccaacc tccatttaaa cagctgctaa gagaaatgta
    27901 ttaatcatca atactaaata catcaccacc gtgcatatcg atcatttcta atgctttacc
    27961 accaccacga gctacacaag ttaatggatc ttctgctact acgacttgca cgccagttga
    28021 atcagaaagt aaacgatcta aattatgtaa taatgcacca cctcctgtta acaccatacc
    28081 gcgctcaaaa atgtctgctg ccaattcagg tgggcattgc tctaagactg atttaactgc
    28141 ctctacaata ccatttaatg gttgttcaat tgcttctaat acatgtcttg agttaagctc
    28201 gaaagtacga ggagcgcctt cagctaaatt gtgtccgtgt acttccattg ttttaacatc
    28261 atcatcggat tcaatcttag cactagcaat ttcttgttta attcgctctg ccgttgcttc
    28321 accaatagca gaaccaaaat gacgacgtac ataagcaata atagcttcat ctaacttatc
    28381 accaccaata cgcacagaag ttgaatacac aatgccgttt aaagaaagca ctgccacttc
    28441 ggttgtaccg ccaccaatgt caattaccat tgaccccatt gcttcgtgaa ccggcaaacc
    28501 tgcaccgatt gcagccgcca ttggctcttc aattaaatag acttcacgcg ctcctgctcc
    28561 aattgcagat tctttaattg cacggcgttc cacttgtgtt gcacctgctg gcacgcacac
    28621 taatacacga gggcttgggc gcataaagtt attactatgt acttgtttaa taaagtgttg
    28681 caacattttt tctgttacaa aaaaatccgc aatgacacca tctttcattg gacgaatcgc
    28741 cattatgctt tttggtgtac ggcctagcat taattttgca tgtgagccta ccgccgcaat
    28801 actttttagc gatcccatac gatcttgacg tacagcaacc actgagggtt catctagcac
    28861 aataccttga cctttaacat aaaccagtgt atttgctgtc ccgagatcga tagaaagatc
    28921 gtttgaa
//
LOCUS       DANLRW010000021        28890 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.021, whole genome shotgun sequence.
ACCESSION   DANLRW010000021 DANLRW010000000
VERSION     DANLRW010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28890
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.021"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(100..1431)
                     /gene="pcnB"
                     /locus_tag="PXA71_000745"
     CDS             complement(100..1431)
                     /gene="pcnB"
                     /locus_tag="PXA71_000745"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HDL5104877.1"
                     /translation="MLHKKFAVNASQYRISPKDFPKNAISIVDKLQIAGYEAYIVGGC
                     IRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFRA
                     GHESHRNDKISKVSDEGMLLRDNVYGTLREDAERRDFTVNALYYDIKRNLIFDFFNGI
                     EDLRAGKLSLIGEPTIRYQEDPVRMLRAVRFMAKLDMFLDKATASPIRDMAVLLTNIP
                     AARLFDESLKLLQTGAGLKTYQLLREYELWQFLFPVLPAFFTAKGDSYAERMITKALN
                     STDERIADKLPVNPAFLFAALLWYPLREKMEQLKNEGGFNSYDAMMLAANDVLAESCN
                     AIALHRRHTSVIRDIWALQFQMMKRSGNRPQQTLEHVKFRAGFDLLVMRAEIEGGDLV
                     ELSAWWHEYQFSNEGQRTELLKSVRHLGNVPSEKKKTRRRRTFKKKPKVNG"
     gene            complement(1676..2122)
                     /gene="dksA"
                     /locus_tag="PXA71_000746"
     CDS             complement(1676..2122)
                     /gene="dksA"
                     /locus_tag="PXA71_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HDL5104878.1"
                     /translation="MTQAAKTSLGLLALAGVEPYELKKDEEYMNEAQREHFTKILKAW
                     HSQIMEEAERTKSQLQEDMTNFADPNDRASQEEEFSLELRNRDRERKLLKKIEQTLYK
                     IQEDEYGYCETCGVEIGIKRLEARPTADLCIDCKTLAEIREKQLGL"
     gene            complement(2372..3325)
                     /gene="thiB"
                     /locus_tag="PXA71_000747"
     CDS             complement(2372..3325)
                     /gene="thiB"
                     /locus_tag="PXA71_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HDL5104879.1"
                     /translation="MKFILSSLALLSASVYANQPTLTVYTYSSFASEYGPAPKLEQNF
                     EKECGCDVKFVPLDDSVTMFNRLRLEGAKTKADVVVGIDNFLQPEAEKSGLFAEFEAK
                     TKLETQQKIFFPYDTGSYAFIYDKEKLKNPPKSLKELVERQDLKVIYQDPRTSSVGRG
                     FLMWVNQVYGDEAPTAWKTLAKHTVTVGKGWSETYGAFLKGESDLVLSYTTSPLYHKW
                     HENTDKYVAAPFEEGHLVQVENAAIVKSSQQKALANQFLEFLHKPESQHIISYHNVMN
                     PVLTDGVDPAFAAMPTYKTIEFTPPTTETIQKWLADWSKSW"
     regulatory      complement(3369..3512)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            3796..4782
                     /locus_tag="PXA71_000748"
     CDS             3796..4782
                     /locus_tag="PXA71_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HDL5104880.1"
                     /translation="MSQLIRTLKGHIRDEIIKKGGWVNAHAHADRAFTMTPEKITVYQ
                     NANLQQKWDLVDEVKRNSSVEDYYRRFSQAIELMISQGVTAFGTFVDIDQVCEDRAII
                     AAHKAREVYKNDIILKFANQTLKGVIEPNAKKWFDIGSEMVDMIGGLPYRDELDYGKG
                     LEAMDILMDKAKSLGKMLHVHVDQFNSPKEKETEQLCDKSIEHGMQGRVVAIHGISIG
                     SHPKEYRKMLYQKMRDSQMMVIACPMAWIDSGRKEDLQPFHNALTPADELIPEGITVA
                     IGTDNICDYMVPLCEGDMWQELSLLSAGCRFTNLEEMANIASINGRKVLGLV"
     gene            complement(4836..5255)
                     /locus_tag="PXA71_000749"
     CDS             complement(4836..5255)
                     /locus_tag="PXA71_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF937 domain-containing protein"
                     /protein_id="HDL5104881.1"
                     /translation="MLGNILGSLASSVLSGNNQSTATQLIQNLLASQGGIEGLIAKFQ
                     QGGLDDVLRTWISSDEDNAPVSGEQISNVFGQENIQNVAQEAGVDAADASDLLAQFLP
                     KIVDTLTPNGNVEDLKNFDANDLLAQAAKGILGNLFK"
     gene            complement(5333..6088)
                     /gene="kdsB"
                     /locus_tag="PXA71_000750"
     CDS             complement(5333..6088)
                     /gene="kdsB"
                     /locus_tag="PXA71_000750"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HDL5104882.1"
                     /translation="MKFTVIIPARYASSRLPRKPLLDIAGKPMIQHVWEKAQLAGASR
                     VIIATDHPEIEALAQSFGAEVCMTSEKHNSGTERLAEVIEKMQIADSEIIVNIQGDEP
                     LIPPVIVTQVAQNLDAYQVNMATLGVKLATREELFNPNAVKVVADKNGMALYFSRASI
                     PFARDSFPDCDDSFVAAQGYLRHIGIYAYRAGFVKQYVAWQPTQLEQLESLEQLRALW
                     HGEKIHIEPAKEAPQVGVDTPEDLERVRAILAR"
     gene            complement(6098..7051)
                     /gene="trxB"
                     /locus_tag="PXA71_000751"
     CDS             complement(6098..7051)
                     /gene="trxB"
                     /locus_tag="PXA71_000751"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDL5104883.1"
                     /translation="MTTKHTKLLILGSGPAGYTAAVYAARANLNPVLVTGMQQGGQLT
                     TTDEIENWPGEFEQITGTELMNKMLKHAEKFETEIVFDHIHSVDLSKRPFTLNGDLYT
                     FTCDALIIATGASAKYLGLPSEEHFKGKGVSACATCDGFFYRNKPVAVVGGGNTAVEE
                     ALYLANLASEVHLIHRRDSFRAEKILLGRLQKRIEEGKIILHTDRTVDEVLGDNMGVT
                     GLRLKSTKEELSEEIKVDGFFVAIGHAPNTAMFEGQLELENGYIKVKSGLEGNATATS
                     VEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERFLDAQEA"
     gene            7218..8288
                     /gene="dhaK"
                     /locus_tag="PXA71_000752"
     CDS             7218..8288
                     /gene="dhaK"
                     /locus_tag="PXA71_000752"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012073177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HDL5104884.1"
                     /translation="MKKLINSIETVLDEQLSGFVKAHSDLTLNTEPVYIYRTTPSNQP
                     KVALISGGGSGHEPMHAGFIGKGMLDGACPGAIFTSPTPDQMFECGLAVDRGEGVLLI
                     IKNYTGDVLNFETATELLADSGVKVATVLVDDDVAVKDSLYTAGRRGVANTVLIEKLL
                     GAAADKGYNLSELAKLGHQLNNNGHSIGIALSACTVPAAGKPSFTLAENEMEFGVGIH
                     GEPGIERRPFENLDSTVKQMFETLIAHGDYQRKIRHWNTQTQQWDEIEESKVALKKGD
                     RVIALVNNLGAVPLSELYAVYDALEKECQTFGLSIERSLVGSYCTSLDMQGISITLLK
                     VDEDILKLWDAPVNTPAMRWGE"
     gene            8309..8935
                     /gene="dhaL"
                     /locus_tag="PXA71_000753"
     CDS             8309..8935
                     /gene="dhaL"
                     /locus_tag="PXA71_000753"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase ADP-binding subunit
                     DhaL"
                     /protein_id="HDL5104885.1"
                     /translation="MTISKQQILKWLENCQQVMTEKRDYLTELDTVIGDGDHGLNMQR
                     GFSKALEKAHTVQDKDIGTLLKTVGMTLLSQVGGASGPLYGSFFIKAAQGATGKEQLS
                     FNELLALLQQGAEAIVQRGHAQVGDKTMCDLWLPLLEDLAQADSTQPIAQILLQAVEK
                     AENFANQTAPLMAKKGRASYLGERSIGHKDPGATSSYYIFKALAEALQ"
     gene            8945..9352
                     /gene="dhaM"
                     /locus_tag="PXA71_000754"
     CDS             8945..9352
                     /gene="dhaM"
                     /locus_tag="PXA71_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HDL5104886.1"
                     /translation="MVNLVIVSHSAKLAEGVGEILAQMAQGGCKIALAGGIEDTSNPI
                     GTDAVKIMQAIESVFSPDGVIVFVDLGSAILSTQTAIDLLEPELAEKVIISYAPLVEG
                     AFAAVVAASAGDSLEAVLNEANEAAALKQEQAN"
     gene            complement(9392..10237)
                     /locus_tag="PXA71_000755"
     CDS             complement(9392..10237)
                     /locus_tag="PXA71_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone YbbN"
                     /protein_id="HDL5104887.1"
                     /translation="MDYFVNVNEQNFSEVWAAAAQVPTVFHFISPREVASLEMDALLR
                     RISDENPNQFLLATVNCDEQQALAAQFRIQQIPTLYLFAGGQPIDAIQGAVSEQELRI
                     RLANILPKEEELKFQQALELLQDQRYTEALPLLKSAWEMTDKKNSDFALLYAETYIAM
                     KSVEEAREILKAIPIQDRDSRWHGLQAQIELLEQASESPELQQLQADYANSKTPEIAI
                     KLANQLHQAHKNEEALTLLFDWLKSDLNVANGEVKSQFLAILSALGTDPIVPKFRRQL
                     YSLLY"
     gene            complement(10281..10607)
                     /gene="glpE"
                     /locus_tag="PXA71_000756"
     CDS             complement(10281..10607)
                     /gene="glpE"
                     /locus_tag="PXA71_000756"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HDL5104888.1"
                     /translation="METTFKEISPQQAWELIENEGAVLADVRDARRYVYSHPQDAFHL
                     TNQSYGKFLDEVDYDEPVVVICYHGVSSQSTAQFLIEQGFENVYSVKGGFEAWERNGL
                     PIETSY"
     gene            10758..11216
                     /gene="exbB"
                     /locus_tag="PXA71_000757"
     CDS             10758..11216
                     /gene="exbB"
                     /locus_tag="PXA71_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HDL5104889.1"
                     /translation="MEQLFQFLEHHTDFVILGLLGLLSVICLWKAIERIMFYSKVDIS
                     KYDTLEELDIDLTHNLTTISTIGSNAPYIGLLGTVVGILLTFYHLGQSGGDIDAASIM
                     VNLSLALKATAVGILVAIIAMVFYNGFGRKVEENKLKWLALQSKKPHQAV"
     gene            11253..11690
                     /gene="exbD"
                     /locus_tag="PXA71_000758"
     CDS             11253..11690
                     /gene="exbD"
                     /locus_tag="PXA71_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HDL5104890.1"
                     /translation="MKKFDEINIIPFIDIMLVLLAIVLVTASFISQGKIQVNVPKAST
                     TQPMKADDLAKLLTITENNEFFFNDQAITKEQLIAEVATWDKSQKVSLKVDGAVAFEK
                     FVELTDILSANEIKNVAIITKKETAPAPSSTPGSPAQVPAVAP"
     gene            11706..12617
                     /locus_tag="PXA71_000759"
     CDS             11706..12617
                     /locus_tag="PXA71_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HDL5104891.1"
                     /translation="MKKKHSRIGLLASLAIHTALIGGTFAWLHNHKVEKIAEQNSLSM
                     EMVAALLEQPQVAVAPDPITEEVKEIEPEKAEVPPEPKLTPEPTPEPEAIPDPTLNPK
                     KEKPKEEKRKERHHHKHKHRHKEKREELQEQEKPKDKPKERPKHHHKHIKALERGPEI
                     KQGIVAKAIPNAAEGEKVVAGVVGGQKNGSPNSTSTTGSANTGASSGNASELAAYKVA
                     LQRALQRKANNSYPQREKMMRKTGTVTIKFTITSSGSITNVSVLNSSGNSNLDNAAVR
                     SAEGLSMPPPPAGFPPTVTVPVRFALE"
     gene            complement(12686..13567)
                     /gene="cysZ"
                     /locus_tag="PXA71_000760"
     CDS             complement(12686..13567)
                     /gene="cysZ"
                     /locus_tag="PXA71_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HDL5104892.1"
                     /translation="MSSVFSEPQNQVGLGFHYFIYGWRLLLQRQFLPFVIFPILINTV
                     LMVGLIWGFFANIGGLLDMLLPSWLEWLSFVLIPLIFLMILVGFYFAFTTLANFVAAP
                     FNALLAEKVELQLTGEPLGDMSFGAMLKDVPRMLKREWQKMMYSIPRLIALFVLGFLP
                     VVGQTVAPVLTFIFGAWLIAIQYCDYPFDNHKISFQRMRNALSQSRTLNFTFGALVSL
                     FTMIPFVNLVVMPVAVCGATALWVKEYRNFFLNNQTGEFSKADYTFTKVNSTSLSTET
                     RTGEVSPNVRNGDIRKQ"
     gene            13679..14581
                     /gene="zipA"
                     /locus_tag="PXA71_000761"
     CDS             13679..14581
                     /gene="zipA"
                     /locus_tag="PXA71_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HDL5104893.1"
                     /translation="MELHIIFFILAGLLIAVLIGFSLWSARREKSNIFSNTFSTRPIA
                     VPPQNNKMSNSIPTSLQPQNEDYQAMSVPEENPQQIQQEVESSLQNIKISLPGGNPQQ
                     QPEQIQPIQSVAEPTVSTYGQKISNQQHIQYNTPDFANPMVNTVVEETPQAVAIEPQE
                     TQSAEEENPFVTLYLYAPQNEAFRGDFVVHYLEEVGLRFGEHQIFHRHQHIDDSLSPI
                     IFSAANLMNPGTFDLNNISNFATAGLVLFMQLPTEGNDVANMKLLISNAEHLAASLGG
                     FLYDDNQQPFGEESRQRYMQRVMH"
     gene            14646..16703
                     /gene="ligA"
                     /locus_tag="PXA71_000762"
     CDS             14646..16703
                     /gene="ligA"
                     /locus_tag="PXA71_000762"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDL5104894.1"
                     /translation="MSLFNQTSLFEENATPELVEKIETIRQTLRQYEYEYHVLDNPSV
                     PDAEYDRLMNELKNLEWQHPELISADSPTQRVGAKPLAGFAQVTHEIPMLSLDNAFSD
                     EDLDGFLRRMESYITASPSQLEFCCEPKLDGLAVSILYENGILTRAATRGDGTTGEEI
                     TANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGFNELNEKALAKGEKTFANPRNAA
                     AGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWLKSLGIPVNNEIRLV
                     QGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQLGFISRSSRWAIAYKFPAQ
                     EEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLGIVIGDTVI
                     IRRAGDVIPQITGVMLERRPENAKKIEFPTACPICHSAVTRVEGEAVARCTGGLFCEA
                     QRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDHTTLMRLERMGEKS
                     AQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIRQATFEQLKEVQ
                     DVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDKNVVLTGTLT
                     QLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILSEQQFIEL
                     TQH"
     gene            complement(16766..18034)
                     /locus_tag="PXA71_000763"
     CDS             complement(16766..18034)
                     /locus_tag="PXA71_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL5104895.1"
                     /translation="MTQQIEHSTWQSKFAAMGPGILMASAAVGGSHIIASTQSGAIYG
                     WQLAIIILLANLFKYPFFRFGVQYTLASGKTLLEGYKEKGKFYLIIFFILNVFAAMIN
                     TAAVAIVSAAILKFIFSALGIPLDLSIPMAGTIVIVVTWGILLLGQYKFLDTLSKWIM
                     IALTISTVSAVIIAALKGGVEIAPDFVEPSPWNLAALVFIVALMGWMPAPIEISAINS
                     MWVIAKKRLSKVNYEDGIFDFNVGYIGTAILAIVFLALGALVQYGSGEKVEQAGVAYI
                     AQLIKMYAFAIGDWSKLLIAFIAFMCMFGTTITVIDGYSRANAEALRLISGRKQHSQT
                     ELSIWMTVTALIGILIISQFMSDVAKMLQFAMISSFVSTPVFAWLNFSLVLKGEHRAK
                     GWLFWLAVIGLIYLTSFTLLFLAQQFKLIG"
     gene            complement(18358..19068)
                     /locus_tag="PXA71_000764"
     CDS             complement(18358..19068)
                     /locus_tag="PXA71_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4189 domain-containing protein"
                     /protein_id="HDL5104896.1"
                     /translation="MFMVIQLALYNLQTYEVGRNATTIFMTTDKVYTGGSTWTYLFAD
                     ADNKITSVREMNGFGDVEKEFKCGEYKEAVTIASKEDLAKRKTQPRLWSSIYMSPEQN
                     MMWVTDNTSKNLENAKQDAFKQCEKNGGRNCQMILSFSNMCLAFAQGYKDGQGFEDFG
                     YGIVSSLAEENALENCNQKGGSSCLLSAPAVCAIPCDILSNNKCMYDQPQIIIPGKNN
                     NQPINPPANGNGEHWLSN"
     gene            complement(19037..19183)
                     /locus_tag="PXA71_000765"
     CDS             complement(19037..19183)
                     /locus_tag="PXA71_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104897.1"
                     /translation="MIKPLDSVYWRGKDVSEFFARKRLPDTAVQCVKDNELSYVYGYS
                     TSFV"
     gene            complement(19301..20518)
                     /gene="fabB"
                     /locus_tag="PXA71_000766"
     CDS             complement(19301..20518)
                     /gene="fabB"
                     /locus_tag="PXA71_000766"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HDL5104898.1"
                     /translation="MKRVVITGLGVISSIGNNKEEVLESLKAGKSGIEFVPEFAEVGM
                     RSQVAGTIKLNPAELIDRKIYRFMGDAAAYAYLSMKEAIEDSGLTEEQVSNDRTGLVI
                     GAGTGSAHSQLVACDAVRGPRGVKAVGPYAVTKTMASSVSACLATPYKIRGVNYSISS
                     ACATSAHCIGHAMELIQLGKQDVVFAGGAEELSWECATEFDAMGAVSTKYNETPTKAS
                     RAYDANRDGFVIAGGGAVVVVEELEHALARGAKIYAEIVGYGATSDGYDMVAPSGEGA
                     ERCMRQAMATVNGEIEYINVHGTSTPVGDVKELGAIRNVFGDKTPAISSTKSMTGHSL
                     GAAGAHEAIYSLLMLDNNFIAPSINIETLDEQAQGMNIVTERQDKALTTVMSNSFGFG
                     GTNACLVFQRYSK"
     gene            20779..23316
                     /locus_tag="PXA71_000767"
     CDS             20779..23316
                     /locus_tag="PXA71_000767"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HDL5104899.1"
                     /translation="MKTLTLTANKITAVEGAAIGANQGSFAQKLNSTKARIDQLNAYR
                     IERAINANNHHFMHVFSLIPLLIHLNHPVLPAYVENAPQGIWHFQLSDYQKQFLVSYR
                     FDEAISADHLGPHPSFDALYSMGSTGTITQTSCSDLDLWLCYPNHFTIEQYKLMELKI
                     NKLQEWAKTFQIDINIYLMNPEQFKSQTYNSSVTDEHSGSAQHFFLLDEFYRSAILLA
                     GKRLLWLHLHKNEYQNVHNNPEIDLTEWIDFGDFSSLSTSEFFGASLWQLYKGINNPY
                     KSAIKILLLECYAHTYPKTKLISKEFKKKLLSDNALEYHFDPYLAMLELVTEHLRSRK
                     EWVKLDRLRVCFYAKAVEGEINNNWRSRDLDELVNQWSWSEKQIQLLQNRQHWKIKQV
                     MNHENMLIDHLLQSYRNLIHFARKFHINPSIMTNDTDILMRKLYSVFEALPGKISLIN
                     HKISSNLAEKAITFIEAKVGSALQPGWYLVNQAPKSRYDSENRYVHYNKSPIKLIAWG
                     YFNGIINAATNLHTVSPNLDIEKLRQFITDLRLSFPIQAPEVTNDDMHHPNEIRNLVI
                     ALNLVQDPTEHIDELPKKVYPSDLFNFGKAQKTLVGSVSIIYRNVWNEIRTQHFDGED
                     AILKALKLVSNRIYQGNSSPQSVNVFCYSKYLRSELRDFVADLVHKCITIQTGCLLQE
                     NEFSTLKVAGKTWQFLFHKKTFSIKQIDEQQAVENLNSFAKTKQNAKSENEKKKEFPQ
                     QISEFASEGFLQFFFEDNVDNSFNVYVVDERNNVESYYNCFGNKEEKIRKINKLQNEK
                     QLKTETPASFGSFNHPQFYQLISPNGELCIVPFQSRQHLDYLAQKHH"
     gene            23347..25215
                     /locus_tag="PXA71_000768"
     CDS             23347..25215
                     /locus_tag="PXA71_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDL5104900.1"
                     /translation="MSGLVSPELIKTVALLATSVTIVPLFKRLGLGSVLGYLVAGCLI
                     GPSGIGLFQDPAAVVHMAELGVVMFLFIIGLEMHPELLWAMRKAIFGRGFLQVAICGT
                     LLTLAGIYLLGFSKEVAFIAGMGFTLSSTAIVMQVLEDKGISSTPKGQRIVATLLFED
                     LAIVPLLASVAFLAPNQVDAESSTNWSAIGLSLVAVLILVASGKWLMNPIFRVISKAK
                     VREMMTAAALLVVLGSALLMEISGLSMAMGAFLAGVMLSESSFRHQLEADIEPFRGLL
                     LGLFFMGVGMSLDLSLVLNNWLWLLVIVAVYVIGKGLGIFIAASITRLTLNESIVRTT
                     IMAHGGEFAFVLFSAAATAGILTPDTHATLTAAVIVSMLLSPLLILIKQGVRKKKAKN
                     ESTNMTGVELPEDLEANVLVIGFGRFNQIVCQALLAKGLSVSVIDSNTDHIRAAARFG
                     FKLYYGDGARLDVLRASGIANANCVIVGVGNPERTEKIVELIKSEYPLVPVFARTYDR
                     QSAVDLVKKHHVDYHIRETFESALALSQAAIERLGSSEEEAKQIISYVRRLDAERFNE
                     ELLHGFSAEVIRKYWVPTPWVNPQHEGSALNEETADILEELGETVEVIKVDITDKN"
     gene            complement(25375..26271)
                     /gene="malM"
                     /locus_tag="PXA71_000769"
     CDS             complement(25375..26271)
                     /gene="malM"
                     /locus_tag="PXA71_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose operon protein MalM"
                     /protein_id="HDL5104901.1"
                     /translation="MKKTLLSTAIFFAHLLVVSPSIANGSAGKSIHINSAELAQIQWQ
                     DVPFSQTVKTDLSEQHKQAFTTAFAGIASPVAAYRIPANQGTLEIEIESPVMDKNVFV
                     PTAVVLDSQFNVASTYPSSEFKLLEERGLKGSRLGAELNLTPAMNQDYIYLLIYTTQQ
                     DLAKTTMMPHPAKTYAKATGKQPPAINDIEVAHSLKGQIHINVTGSNGTKFIGLPTEI
                     FSSNKAATPAAKTAIPLPIKENPVAVKTAVDKDTEAYFNQAVMKAIKAKDINKAMNLV
                     NEAEKLGLTSPRQIFLKNVSSN"
     gene            complement(26352..27641)
                     /locus_tag="PXA71_000770"
     CDS             complement(26352..27641)
                     /locus_tag="PXA71_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltoporin"
                     /protein_id="HDL5104902.1"
                     /translation="MKKTVLAVAISGAMFAASASAVDFHGYARSGIGWTSGGGEQSAF
                     TVNGGGSKYRLGNESDTYAELKLGQELFKSGEKSIYFDTNLAYGGTLHNNDWTPTSPA
                     LRELNVQFKNFADSLPGATLWAGKRFYQRHDVHMNDFYYWDISGPGAGVENIDLGFGK
                     LSLAVTRDTERGGANTFGYTTVYKLDPSTGKIKLDKQRNKADVYNDIFDVRLAGIELW
                     KDGSLELGFDYGNAHAKKGAALEKGATKNGYMVTAEYTQGNFFGGFNKFTAQYATDSM
                     TSWNNGHAQGSKADNKGNMLRLINQGVVQASDKVEVMYALIYEKTKLDNKQGKTWYSA
                     GIRPMYKWNDTMSTLLEVGYDRIKDQATGKKNDLVKYTVAQQWQAGNSIWARPAIRVF
                     GTYARWNDKFNTKARTDAGYKAKDGEFITGVQFEAWW"
     gene            complement(27739..28857)
                     /gene="malK"
                     /locus_tag="PXA71_000771"
     CDS             complement(27739..28857)
                     /gene="malK"
                     /locus_tag="PXA71_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005552148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter ATP-binding
                     protein MalK"
                     /protein_id="HDL5104903.1"
                     /translation="MANVSLRNVGKSYGDVHISKDINLEINEGEFVVFVGPSGCGKST
                     LLRMIAGLEDITTGELYIGGKLMNEVEPSKRGIGMVFQSYALYPHLDVAENMSFGLKL
                     AGVSKAERDQRVNQVAEILQLAHLLDRKPKALSGGQRQRVAIGRTLVSQPEVFLLDEP
                     LSNLDAALRVQMRVEISKLHKKLNRTMIYVTHDQVEAMTLADKIVVLNAGGIAQVGKP
                     LELYHYPANRFVAGFIGSPKMNFLPVKVIAVEPERVKIELPDANHHNFWIPVSGEGVN
                     VGDNLSLGIRPEHLVPSDQTQVTLHGIVQVVELLGNETQIHLEIPEIKQPTLIYRQND
                     VVLVNEGDDLNIGILPERCHLFKEDGTACKRLFVEKGV"
BASE COUNT         8776 a         6134 c         5561 g         8419 t
ORIGIN      
        1 ttttattaaa ttttttacac atttcccctc tccctgattt ttcttctgaa cgaagaaaaa
       61 tcgctccctc tcccacaagg ggagagggaa atatattaat tatccattta ctttcggttt
      121 tttcttaaag gttctacggc ggcgtgtttt ctttttctcg ctaggcacat tgcctaaatg
      181 acgaaccgat ttcagcaatt cagtacgctg accttcattg ctaaattggt attcgtgcca
      241 ccaagcggaa agttcgacca aatcgccgcc ttcaatttct gcacgcatca ctaataaatc
      301 aaaccctgca cggaatttga cgtgttcaag ggtttgttgc ggtcggttgc cacttcgttt
      361 catcatctga aattgcaatg cccaaatatc tcgaatgact gaagtgtgtc tgcggtgcaa
      421 cgcaatcgcg ttgcaacttt ccgccagcac atcatttgct gccagcatca ttgcatcgta
      481 gctgttgaag ccaccttcgt ttttaagctg ctccattttc tcccggagcg gataccaaag
      541 tagtgcagca aataaaaacg caggatttac cggtaattta tcggcaattc gctcatcagt
      601 tgaatttaac gctttggtaa tcattctttc ggcataggaa tcacctttgg cagtaaaaaa
      661 tgccggcaat accggaaaca agaattgcca tagttcatat tcacgcaaaa gctgataagt
      721 tttcagccct gcaccggttt gtaataattt gagtgattcg tcaaacaaac gggctgccgg
      781 aatgttggtt aacaacaccg ccatatcccg aattggggag gccgtggctt tatccaagaa
      841 catatccaac ttcgccataa aacgaacggc tcgcaacatt ctcaccggat cttcttggta
      901 acgaatagta ggctctccga taagcgaaag tttacctgct cgtaagtctt caataccgtt
      961 gaagaaatca aaaataagat tgcgttttat atcgtaatat aaggcgttta cggtgaaatc
     1021 acggcgctct gcatcttcac ggagcgtgcc gtaaacatta tcacgcagta gcattccttc
     1081 atcgctgact ttagaaattt tgtcattgcg atgagattcg tgtcctgcac ggaaagtcgc
     1141 cacttcaaaa atttcacgcc cgtaaacaat gtgtgccaaa cggaaacgac gtccgattaa
     1201 tcggcattgc ctaccaaaaa tacgctgaat ttcttcaggt ctcgcattag tcgcaatatc
     1261 gaaatcttta ggctttttct ccaagagtag atctcgaata cagccaccca caatataagc
     1321 ttcataaccg gcaatctgca atttatcgac aatcgaaatc gcatttttag gaaaatcctt
     1381 cgggctaatt ctatattggc tggcattcac cgcaaatttc ttgtgtaaca aatgggaggg
     1441 aggattatct tgttgtttct tcccacctct ataagtcttt tggtccgtta agttcggggc
     1501 tgggcgttta gaacgggaag ttttgggttc tctttccgct cttttttcac tctctacctt
     1561 ttcatttttc tgagccgact ttttaggctt ggaaaataat gatttaatat aattaaaaat
     1621 aatacacctc taaatagtaa atgcctctta aaaaagaggc accctgtaaa gttgattata
     1681 agcctagctg cttttctcga atttcagcta aagttttaca gtcaatacat aaatcagctg
     1741 ttgggcgtgc ttctaaacgt ttaatcccaa tttctacgcc acaggtttcg caataaccat
     1801 attcatcttc ttggatttta tacaaggttt gctcaatttt tttcaataat ttgcgttcac
     1861 gatcacggtt acgaagctct aaactgaact cttcttcttg actggctcgg tcgttcggat
     1921 cggcaaagtt agtcatatct tcttgaagct ggcttttggt acgctccgct tcttccataa
     1981 tttgactgtg ccacgctttc agaattttgg tgaaatgctc acgttgagct tcattcatat
     2041 attcttcgtc ttttttaagc tcataaggct caacgcctgc taatgctaat aaaccgagtg
     2101 aggttttagc cgcttgagtc atagatattt actccttgtt ccctgtttat tggaagtttt
     2161 attgttaaaa ttattgcccg aatacagact aacttccttg taaccgcact atacgaaaaa
     2221 atcaacatct tcgggtttta aataatggcg gctataaata acacaaaaac gactcattaa
     2281 tcaaatgaat ttgcaaaaat tttgcattca aattgatttg attgcacaaa aaaatagccg
     2341 aacatccatt cggctatttt tcaaacactt tttaccagct ctttgaccaa tcggctaacc
     2401 atttttggat agtttcagta gtcggtggcg taaattcaat ggttttatag gttggcattg
     2461 ccgcaaaagc cggatcaacg ccgtcggtta aaaccggatt cattacgttg tggtaagaaa
     2521 taatatgttg cgattccggt ttgtgcaaaa attcaagaaa ttgatttgcc aatgcttttt
     2581 gttggctgct tttgacaata gccgcatttt ctacttgcac caaatgccct tcctcaaacg
     2641 gagcagccac atatttatcg gtgttttcgt gccacttatg atataaaggc gatgtagtat
     2701 agcttagtac caaatccgac tcgcctttta agaacgctcc ataagtttca gaccaacctt
     2761 tgcctaccgt taccgtatgt tttgccaatg ttttccaagc agttggagct tcatcgccat
     2821 acacttgatt tacccacatt aagaagcccc gcccaacgct gctggtacgt gggtcttggt
     2881 aaatcacttt taaatcttgg cgttccacca actcttttaa actttttggt ggatttttca
     2941 gcttctcttt atcgtaaata aaagcataag aacccgtgtc ataagggaag aaaattttct
     3001 gttgggtttc taatttggtc tttgcttcaa actcggcaaa caagccactt ttttcggctt
     3061 caggttgcag gaaattatca ataccgacca ccacatcagc tttggttttt gctccctcca
     3121 aacgcaagcg gttgaacatc gttacgctat cgtcaagcgg aacaaatttg acatcacagc
     3181 cacactcttt ctcaaaattc tgctctaatt taggagcagg tccatattcc gaagcaaacg
     3241 agctgtaagt gtaaacggtt aaggtcggtt gattggcata aacacttgca cttaataacg
     3301 caagtgaaga gaggataaat ttcataacaa ttccttctaa attaaatgaa tagaaggatt
     3361 taagaaaggc aagttgctat ctcaaatccc tacgctgata ttaatcagat caggttctat
     3421 gggtatttct cagccacaag cggttaaatt tcggcaaaaa tttgcaaatt tttacgcaaa
     3481 aacaaccgct tgttgcaccc caatgagaac ggcttcattg taaaaagttt gcaggcagat
     3541 ttcaaccaaa gcaaacgttt gctatttgta ttaaaaatcc gtatactacc gccctagtcc
     3601 aaacaaggaa ctagaaatga attgcacaac atcggttaaa tcaaattccc aacagctacg
     3661 cttcaacttt agaggcgtag ctgtttttct attcatttca aaccattcaa aatcgctgtt
     3721 atagcgattt tttttcgcac gcttgcaatt accgcaagcg gttgagccac attaacagag
     3781 agaaaaggaa taaaaatgag ccaattgatt cgtaccctaa aaggacatat tcgtgatgaa
     3841 atcatcaaaa aaggcggttg ggtaaatgca cacgcccacg cagatcgtgc atttacgatg
     3901 acgcctgaaa aaatcaccgt ttaccaaaat gcgaatctac agcaaaaatg ggatttggtc
     3961 gatgaggtaa aacgtaattc aagcgtagaa gattactacc gccgcttttc ccaagcgatt
     4021 gaattgatga tttcacaagg ggtaacggca tttggtactt ttgtggatat cgaccaagta
     4081 tgtgaagaca gagccattat tgccgctcac aaagcccgtg aagtatataa aaacgacatc
     4141 atcttgaaat ttgctaacca aacgttgaaa ggcgtgattg aacccaatgc gaaaaagtgg
     4201 ttcgatatcg gctcggaaat ggtggatatg attggtggct tgccttaccg tgacgaactg
     4261 gattacggca aaggcttgga agcaatggat attttaatgg ataaagccaa atcgctcggc
     4321 aaaatgctcc acgtccacgt tgatcaattt aactcaccta aagaaaaaga gaccgaacaa
     4381 ctgtgtgata aatcgattga gcatggtatg caagggcgag tggttgccat tcacgggatt
     4441 tccatcggct cgcacccgaa agaatatcga aaaatgcttt accaaaaaat gcgtgatagc
     4501 caaatgatgg tcattgcctg tccgatggcg tggattgata gcggacgtaa ggaagattta
     4561 caaccgttcc ataacgcttt aacccctgct gatgaactca ttcctgaagg cattactgtt
     4621 gctatcggca cagataatat ctgtgattat atggtaccgc tttgcgaggg cgatatgtgg
     4681 caagaactca gccttttatc agcaggctgt cgttttacta acctagaaga aatggcaaat
     4741 attgccagta tcaatggtcg aaaagtactg ggtttagtct aactgaataa acgaaaggcg
     4801 aaccctaggt tcgcctttaa taacagcata accgattatt taaacaagtt acccaaaatc
     4861 ccttttgccg cttgagctaa taagtcattt gcatcaaagt tttttaagtc ttcaacatta
     4921 ccattcgggg ttaaagtatc cacgattttt ggcaagaact gggctaataa atcgctcgca
     4981 tcagcagcat caacacccgc ttcttgagcc acattttgaa tgttttcttg cccgaacaca
     5041 ttactgattt gttcgcccga aacaggtgca ttgtcttcat cgctgctgat ccaagtgcgt
     5101 aacacatcat ctaatccgcc ttgttggaat ttggcaatca gcccttcaat cccaccttgt
     5161 gaggcgagta aattttgaat taattgagtt gcagttgatt ggttattgcc actcaatact
     5221 gaagaagcca atgaacctaa aatatttcct aacataattt ctcctatgca agcggtacaa
     5281 ttttgcgaaa attttgcaaa aaaacagcaa acttcgaccg cttgtaatca ctttaacgag
     5341 ctaaaatggc tcgcactctt tccaaatctt ccggcgtatc cacccccact tgcggggctt
     5401 ctttcgccgg ttcgatatga attttttcac cgtgccataa ggctcttagt tgctcaaggg
     5461 actcaagctg ttctaattgt gtcggctgcc acgccacata ttgtttcaca aaaccggctc
     5521 ggtaagcgta aatgccgata tggcgtaaat aaccttgagc ggcaacaaaa ctgtcatcac
     5581 aatccggaaa actgtctctg gcaaacggaa tgctggctcg ggaaaaataa agtgccattc
     5641 cgtttttgtc tgccaccact ttcaccgcat ttgggttaaa tagctcttct cgggtcgcta
     5701 atttcacacc gagtgttgcc atattgactt gataagcatc taaattttga gctacctgag
     5761 taacaattac cggtggaatc agcggttcat caccctgaat attcacaata atttcgctgt
     5821 cggcaatctg cattttttcg atcacttccg ccaaacgctc agtgccggaa ttgtgttttt
     5881 ccgaagtcat acagacttcc gccccaaaag attgagcgag ggcttcaatt tcagggtgat
     5941 cggtggcaat aatcacacgg cttgcaccgg caagctgagc tttttcccaa acgtgttgaa
     6001 tcatcggttt gcctgcaata tccaacaacg gcttacgagg caaacggctg gaagcgtaac
     6061 gagcaggaat aattacagtg aatttcatag gctatcctta tgcttcttga gcatctaaga
     6121 aacgttctgc atccagggct gccatacaac ctgtgccggc agaggtaatc gcttggcgat
     6181 agttatgatc catcacatca ccggcagcaa atacgccttc cacagaagtg gcagtagcat
     6241 tgccttccaa acctgatttc actttaatgt agccgttttc aagttctaat tgaccttcaa
     6301 acattgccgt attcggtgcg tgcccaatcg ccacaaagaa accatcaacc ttaatttctt
     6361 cgctcaattc ttctttggtt gattttaaac gtaagccggt aacgcccata ttatcgccta
     6421 acacctcatc aaccgtacgg tctgtgtgca gaataatttt gccttcttca atacgttttt
     6481 gcagacgacc aagcaagatt ttttcagcac ggaagctatc acggcggtga attaaatgca
     6541 cttcacttgc caaatttgcc aaataaagtg cttcttccac agcagtattc ccaccaccga
     6601 ctaccgcaac cggtttattg cgatagaaga aaccatcaca agttgcacaa gccgacacgc
     6661 ctttgccttt gaaatgctct tcagaaggca aacctaaata tttcgccgac gcaccggtgg
     6721 caataattaa cgcatcacag gtgaaagtgt ataaatctcc gtttagcgtg aatgggcgtt
     6781 tagataaatc cactgaatga atatgatcaa acacgatttc agtttcaaat ttttcagcgt
     6841 gcttgagcat tttgttcatt aactctgtgc cggtaatttg ttcaaattcc cccggccagt
     6901 tctcgatttc atcggttgta gtgagctgtc cgccttgttg cataccggtg actaaaaccg
     6961 ggtttagatt ggcacgggcg gcataaacag cagcggtata accggcaggc cctgagccta
     7021 aaattaaaag tttggtgtgt ttagtggtca taatgaatcc tctgaataaa tattaatgtt
     7081 tattttagcc taaatttcag ttcaactcta ttttcgtttt cgctcaactt ttttcaattt
     7141 tgtgacaaag ttaacagaaa tccgactgtg tttcttgtaa attgtgacag tctaattcat
     7201 ttaaaagggg caaaaagatg aaaaaattaa ttaattcaat agaaaccgtc ttagatgagc
     7261 aactttctgg ttttgtgaaa gcacattctg atttaacact taacacagaa cctgtctata
     7321 tttaccgcac aacgccaagt aatcaaccta aagtagccct tatttccggt ggtgggagtg
     7381 ggcacgagcc aatgcacgcc ggttttatcg gtaaaggaat gttagacgga gcttgccccg
     7441 gagcaatctt tacatctcca acgccggatc aaatgtttga atgcggttta gcggttgatc
     7501 gtggcgaggg tgtattgcta attattaaaa actataccgg tgatgtgctg aattttgaaa
     7561 cagccaccga gctacttgca gatagcggtg taaaagtcgc aaccgtgttg gttgatgatg
     7621 atgtggcagt caaagacagt ttatatactg ccggccgccg cggtgttgca aatacagtat
     7681 taattgaaaa gctgttagga gctgcagcgg ataaaggcta taacttatcc gaattagcca
     7741 aattagggca tcagttaaac aataacgggc attctatcgg aattgcctta tctgcttgta
     7801 ctgtgccggc tgccggtaag ccatcattta ctttagctga aaatgagatg gaatttgggg
     7861 taggtattca cggagaaccg ggcattgaac gtcgcccctt tgaaaatctg gatagtaccg
     7921 tgaaacaaat gtttgagacc ttaattgctc acggcgatta tcaacgtaaa attcgccatt
     7981 ggaatacaca aacccaacaa tgggacgaaa tcgaagaaag caaagtggca ttgaaaaaag
     8041 gtgatcgtgt tattgcttta gttaataact taggagcagt gccactatcc gaactttatg
     8101 ctgtttatga tgcgttagaa aaagagtgcc aaactttcgg cttaagcatt gaacgcagtc
     8161 ttgttggatc atattgcacc tcgctggaca tgcaaggtat ctctatcaca ttactgaaag
     8221 ttgatgagga tattctcaaa ctatgggatg ctccggtaaa tacaccggca atgcgttggg
     8281 gtgaataatt agattgaaag gataagttat gacaatatca aaacaacaga tcttaaaatg
     8341 gcttgaaaat tgccaacagg taatgactga aaaacgggat tatttaaccg aattggatac
     8401 cgttattggc gatggcgatc acggtttaaa tatgcagcgt ggatttagta aagcacttga
     8461 aaaagcccat accgtgcaag ataaagatat cggcaccctg cttaaaaccg ttggaatgac
     8521 attattatcg caagtagggg gagcgagcgg ccctctctat ggttcatttt ttattaaagc
     8581 ggctcaaggt gctacaggca aagagcaact gagctttaac gagttactgg cacttctaca
     8641 gcaaggagca gaagctatcg tacaacgtgg acacgcacaa gttggcgata aaacgatgtg
     8701 tgatttatgg ctgccattac tcgaagactt agctcaagcc gatagcactc aaccaattgc
     8761 tcaaatctta ttacaagcgg tcgaaaaagc agaaaatttt gcaaatcaaa ccgctccatt
     8821 aatggcgaaa aaagggcgtg ccagttactt gggcgaacgc agtatcgggc ataaagatcc
     8881 gggagcaacg tccagctact atatttttaa agccttagct gaagcattac agtaggaggg
     8941 gtaaatggtt aatttagtga ttgtttcaca tagtgctaaa ctggcggaag gcgtggggga
     9001 aattttggct caaatggcac aggggggctg taaaatcgcc cttgccggcg gcattgagga
     9061 tacctcaaat cctatcggca ctgatgcggt aaaaataatg caagcgattg aatcggtatt
     9121 tagcccagac ggtgtgattg tgtttgtcga tttaggcagt gcaattttaa gtacccaaac
     9181 cgccatagat ttactggagc cggaacttgc cgaaaaagtg atcattagct acgctccttt
     9241 agttgaaggt gcttttgctg ctgtagttgc agcctctgcc ggcgatagtt tagaagcggt
     9301 attaaatgaa gcgaacgaag ccgctgctct taagcaggaa caagccaatt agtaaaaatg
     9361 ccgtatcgaa aaatacggca ttttagtttt attagtacaa tagtgaataa agctgtcttc
     9421 taaatttcgg cacaatcggg tctgtaccca gtgcagataa gattgccaga aattggcttt
     9481 ttacctcgcc gttcgctaca tttaaatccg attttaacca atcaaaaagt aacgtgagtg
     9541 cttcttcatt tttatgagct tggtgtagct gatttgccaa tttaatcgca atttcagggg
     9601 ttttgctgtt cgcataatcc gcttgaagct gttgtaattc gggcgattcg ctggcttgtt
     9661 ccaataattc gatttgggct tgcaaaccgt gccaacggct gtctctgtct tgaatcggga
     9721 tcgctttaag gatttcacga gcctcttcca cgcttttcat tgcaatgtaa gtttcggcat
     9781 agagcaaagc gaaatcgctg tttttcttat cggtcatttc ccacgctgat ttcagcagcg
     9841 gcaaggcttc ggtataacgc tgatcttgca ataattccaa ggcttgttga aatttcagct
     9901 cttcctcttt cggtaaaata tttgccaacc gaatccgtaa ttcctgctca cttactgcac
     9961 cttgaattgc atcaatcggc tgaccgccgg caaacaaata gagcgttgga atttgttgaa
    10021 tgcgaaattg agcagccaat gcttgttgct catcacaatt taccgtcgcc aataaaaatt
    10081 ggttagggtt ttcatccgaa atacgacgta gtaaggcatc catttccaat gaagccactt
    10141 cccttggcga aataaaatga aacaccgtcg gcacttgtgc cgctgctgcc catacttcac
    10201 taaaattctg ctcgtttaca tttacaaagt agtccataca aaaccttctt aagctaaaaa
    10261 ttacttttta tattgtagca ttaataagaa gtttcaatag gtagcccgtt tctctcccac
    10321 gcttcaaaac caccttttac actataaaca ttctcaaacc cttgttcgat taaaaactgt
    10381 gctgtacttt ggctactcac tccgtgatag caaatcacaa ccaccggttc gtcataatcg
    10441 acctcgtcta aaaacttacc ataactctgg ttggttaaat gaaacgcatc ctgtgggtgg
    10501 ctgtaaacat aacggcgggc atcacgcaca tcggcaagca ccgcaccttc gttttcgatt
    10561 aattcccaag cctgttgcgg gctaatttct ttaaatgtag tttccataat cactttccct
    10621 caaaaaacgt gcaactatac cataaaattc taaaaagaat ggctattatt ccaagttgaa
    10681 aatttgatgt ttgtcagata taattgcaaa ctattttcaa atgcactgat ttaaaactac
    10741 cacagtttga ggattttatg gagcaattat ttcaattttt agaacatcat actgactttg
    10801 ttatattagg attactaggc ttattaagcg taatctgcct ttggaaagct attgaacgta
    10861 ttatgtttta ttccaaagta gatatttcaa aatacgatac cctcgaagaa ttagacatcg
    10921 atttaaccca caatttaact accatttcga ctatcggctc taatgcccct tatatcggct
    10981 tattaggaac cgttgtcggt attcttttaa ctttctatca tttaggtcaa tcaggtggtg
    11041 atattgatgc ggcctctatt atggtaaacc tttctttagc tctaaaagcc actgctgtcg
    11101 gtatcttagt ggcaattatt gcaatggttt tctacaatgg ttttggtcgt aaagtggaag
    11161 aaaacaaact gaaatggttg gcattacaat caaaaaagcc tcatcaagcg gtgtgattta
    11221 gtccattttt tgcaaattaa taaggcagaa caatgaaaaa attcgatgaa atcaacatca
    11281 ttccatttat tgatattatg ttggtattac tggctatcgt gttagttacc gcctctttca
    11341 tttctcaggg taaaatccaa gtaaatgtac cgaaagcaag tacaacacag ccaatgaaag
    11401 cagacgattt agcgaagctt ttaaccatta ccgaaaataa tgagtttttc tttaatgatc
    11461 aagcaataac taaagagcaa ttaattgctg aagttgccac ttgggataaa agccaaaaag
    11521 tgtcactcaa agttgatggt gcagtcgcct tcgaaaaatt tgtggaatta accgatatcc
    11581 tttctgcaaa tgaaattaaa aatgtagcaa tcattactaa aaaagaaact gctccagcac
    11641 cttcaagcac acctggtagc cctgcacaag tgccagcagt cgcaccttaa atagggtaaa
    11701 caggtatgaa aaaaaaacat tctcgtatcg gcttattggc atctttggct attcacactg
    11761 ccttaattgg tggcactttt gcttggttac ataaccacaa agtggaaaaa attgccgagc
    11821 aaaactctct ttctatggaa atggtggcag cattattaga gcaacctcag gttgccgttg
    11881 ctccggatcc tattaccgaa gaggtcaaag aaatcgaacc ggagaaggca gaagtaccac
    11941 ctgaacctaa gcttactccg gagccaactc cagagccgga ggcaattcca gatcctacgc
    12001 taaatccgaa aaaggaaaaa ccgaaagaag aaaagcgtaa agagcgacac caccataaac
    12061 ataagcatcg tcacaaagag aaaagggaag agctacaaga gcaagaaaaa ccgaaagata
    12121 agcctaaaga gcgcccgaaa catcatcaca agcatattaa agcattagag cgcgggccag
    12181 agataaaaca aggtattgtc gctaaagcga ttccaaatgc ggctgaaggt gaaaaagtgg
    12241 ttgcgggggt tgttggaggg caaaaaaacg gttcaccaaa ttcaacctca actacaggtt
    12301 cagcaaatac tggggctagc agtggtaatg ccagtgaact tgctgcttat aaagtcgcat
    12361 tacagcgagc attacagcgt aaggcgaata actcttaccc tcagcgtgaa aaaatgatgc
    12421 ggaaaaccgg tacagttacg attaaattta ccattacatc gtccggttca attacaaatg
    12481 tatccgtact caattcatcg ggaaatagta atttagataa cgctgcggta cgcagtgcag
    12541 aaggtttgag tatgcctccg ccaccggcag gcttccctcc tacggtaaca gtaccggtaa
    12601 gatttgccct tgaataaaaa cagccctcaa aagcaatgta cttttgaggg ctttttattg
    12661 caaaaaattg actaaaaatg accgcttact gcttgcgaat atcgccattt ctcacattcg
    12721 gactcacttc acccgtacga gtttctgtgc ttaacgaggt agaatttact ttcgtaaaag
    12781 tataatccgc tttgctgaat tcacctgttt gattatttaa gaagaaattg cggtactctt
    12841 ttacccataa tgccgttgcg ccacaaactg ccacaggcat aactactaaa ttcacaaatg
    12901 gaatcatcgt gaataggctc actaaagcac caaaggtaaa atttaaagtg cgagactgcg
    12961 acaacgcatt tcgcatacgc tgaaaactga ttttatggtt atcaaacgga tagtcacaat
    13021 attgaatggc gatcaaccaa gcaccgaaga taaaagtcag cacaggtgct acggtttgcc
    13081 caaccacagg caaaaagcct aatacaaaaa gagcaatcag ccttggaatg ctatacatca
    13141 ttttttgcca ttctcgtttc agcattcgag gcacatcttt taacattgca ccgaatgaca
    13201 tatcgcccaa aggctcgccg gtaagttgca gttcgacttt ttctgctaat aacgcattaa
    13261 agggagcagc aacaaagtta gccaaggtag taaaagcaaa ataaaatccc actaatatca
    13321 tcaaaaaaat cagtggaatc agtacaaagc taagccattc cagccagctt ggcagtaaca
    13381 tatccaacaa gccaccgata ttggcaaaaa atccccaaat cagccctacc atcagcacgg
    13441 tattaataag aattgggaaa atcacaaaag gcaaaaattg acgttgtaac aataaccgcc
    13501 agccatatat aaaataatga aagcctaatc cgacttgatt ttgcggctca gaaaaaactg
    13561 aagacataat gattccttat tttctatcaa aattaattag aaatatggta agctacgcac
    13621 attattttcg caaatatgaa aatacatttt ttattgatta tttgataaag aggacacaat
    13681 ggaactgcat attatttttt ttattcttgc cgggctactg attgctgtac taattggatt
    13741 tagcctttgg tccgctcgtc gtgaaaaatc aaatattttt tcaaatacat tctcgaccag
    13801 acctattgct gtgccaccac agaataataa aatgagcaat agcatcccaa cctcattaca
    13861 gccacaaaat gaggattatc aagcaatgtc tgtgccggaa gaaaatccgc aacagataca
    13921 acaggaagtt gaaagctcgc tgcaaaatat caaaatcagt ttgccgggcg gaaatcctca
    13981 gcaacagcct gagcaaattc agccgataca atcggtagca gaaccaacgg ttagcactta
    14041 cggtcagaaa atttctaatc agcaacatat ccaatacaat acgccggatt ttgcaaaccc
    14101 aatggtgaac acagtggtgg aagaaacacc tcaagcagta gctatcgaac ctcaagaaac
    14161 ccaatcggca gaggaagaaa atccatttgt aaccctctat ctttacgcac cacaaaatga
    14221 agctttccgc ggtgattttg tagtacatta tttagaagaa gttggcttac gttttggcga
    14281 acaccaaatt ttccaccgcc atcaacatat tgatgattca ttaagtccga ttattttcag
    14341 tgcagcaaat ttaatgaacc caggaacctt tgatttaaat aatatctcaa actttgcgac
    14401 agctggttta gtgctattta tgcaacttcc aaccgaaggc aatgatgtgg ctaatatgaa
    14461 gttgttaatc agtaacgctg aacacttagc agcatcgtta gggggattct tatatgacga
    14521 taatcaacag ccttttggcg aagaatcccg ccaacgttat atgcaacgtg tgatgcacta
    14581 attgcgaaaa aattaataaa tccgaccgct tgtacaagcg gtcttttttg tagagaattt
    14641 taccaatgtc tttatttaac caaacctctt tatttgaaga gaatgccacg cccgagttag
    14701 tcgagaaaat cgaaactatt cgccaaacat tgcgtcaata cgagtatgaa tatcacgttt
    14761 tagataaccc aagcgtaccc gatgccgaat acgaccgttt aatgaacgag ctgaaaaatc
    14821 tggaatggca gcacccggaa ctgattagtg ccgactcgcc gactcaacgg gttggtgcca
    14881 aaccgctggc aggctttgct caagtcaccc acgaaatccc tatgctttcg ttggataatg
    14941 ccttctccga tgaagactta gatggctttt tacgccgtat ggaaagctat atcaccgcct
    15001 ctccttcgca actggaattt tgttgcgaac ctaaattaga cggcttggca gtgagtattt
    15061 tatacgaaaa cggtatactt acccgagctg caacccgtgg cgatggcaca accggcgaag
    15121 aaattaccgc taatatccgc accattcgca atattccgtt aaagctcaac acgactaatc
    15181 cacctgctcg attagaggtg cgaggcgaag tctttatgcc acaatcaggc tttaatgagc
    15241 tgaatgagaa agccttagct aaaggcgaaa aaacctttgc caaccctcgc aatgccgcag
    15301 caggttcgct tcgccagtta gatccgaaaa tcacccgcca gcgtccgtta gtgctgaatg
    15361 cctacggaat tggggtgtat gaaagcgatg acgaactgcc agccacccat ttcgaacgtt
    15421 tgcaatggct gaaatcgctt ggtattcctg taaataatga aatccgcttg gttcaaggca
    15481 aagctgctct cttggcttat tatgcggaga ttcaggctaa acgcccaaca ttaggctatg
    15541 atattgatgg cacagtattg aaagtaaatg acattgccct acaagagcaa ctcgggttta
    15601 tctctcgctc ctctcgttgg gcgattgcgt ataaatttcc ggctcaagaa gaaatgacaa
    15661 tcctcaaaga agtggacttc caagtgggaa gaacaggggc aatcacccct gtggcgaaat
    15721 tagagcctgt ttttgtcgct ggcgtaacgg taagtaacgc aacgctacac aacggtgatg
    15781 aaatcgagcg acttggtatt gtgattggcg atacggtaat tattcgccga gcgggcgatg
    15841 taattccgca aattacaggc gtgatgttag aacgccgccc ggaaaatgca aaaaaaattg
    15901 aatttccgac cgcttgtcct atctgtcact ccgctgttac tcgggtagaa ggcgaggcag
    15961 tagcacgctg taccggtggt ttattctgcg aagctcaacg taaagaagcc ttgaaacatt
    16021 tcgtttcacg caaggcaatg gatattgacg gcgtaggcga aaaactaatc gagcagttaa
    16081 tggctcgaga gctgattgaa acgcctgccg atctgtttaa gctcgatcac actaccctaa
    16141 tgcgattaga gcgaatgggg gaaaaatcgg ctcaaaatgc tctcaacagc atcgaaaaag
    16201 caaaaaacac tactcttcct cgctttttat tctcgttagg tattcgtgaa gtgggcgagg
    16261 caaccgctct caacttagcc aaccattttg gtagcttaga ggcgatccgc caagccactt
    16321 ttgagcaatt aaaagaagtg caagatgtgg gcgaggttgt tgccaaccgt attgtcagct
    16381 tctggcaaga accgcataat gtggaagtgg tggaagattt gatcgctcaa ggtgtacgtt
    16441 gggaaaacgt tgtgaaagcc gaaattgtag ataacccgtt aaaagataaa aacgtggtct
    16501 taaccggcac gctaacccag ctcacccgtg atgaagccaa agccctatta caaagtttgg
    16561 gctgtaaagt ctccggctcg gtttccagca aaaccgatta cttaatcgcc ggcgaaaaag
    16621 ccggttccaa gctggcaaaa gctcaagagt tgggaattca gattttaagc gagcaacaat
    16681 ttattgagct tactcaacat taacaaacaa aggggcagat gattgaaatc tgccccttat
    16741 tctatctatt gaatgcttaa aagcattaac caatcaattt aaactgctga gctaaaaaca
    16801 gtaacgtaaa gctagttaag taaattaagc cgataactgc caaccaaaat aaccagcctt
    16861 ttgcacgatg ctcacctttt agcactaaag agaaatttaa ccacgcaaaa acaggggtag
    16921 aaacaaatga tgaaatcatt gcaaattgta acattttcgc cacatcactc ataaattggc
    16981 taataattaa aatgccgatg agtgcagtta ccgtcatcca aatacttaat tctgtttgtg
    17041 aatgttgctt acgcccgcta attaaacgca acgcttctgc attcgctcgt gaatatccat
    17101 caataacagt gatcgttgtg ccgaacatac acataaatgc aataaatgcg attaaaagct
    17161 tagaccagtc accaatcgca aaagcataca ttttgattaa ttgagcaata taggcaacac
    17221 cggcttgttc tactttctca cctgaaccgt actgaactaa cgcacctaat gctaaaaaaa
    17281 caatcgccaa aattgccgtg ccgatataac ccacattaaa atcaaaaata ccgtcctcat
    17341 aattcacttt acttaaacgt tttttcgcaa taacccacat tgagttaatg gcagaaattt
    17401 caattggtgc aggcatccag cccattaatg caacgatgaa cacaagtgct gctaaattcc
    17461 acggcgaagg ctctacgaaa tctggagcaa tttcaacgcc accttttaaa gcagcaatga
    17521 tcacggcaga taccgtagag atggttaaag caatcataat ccatttagat aatgtatcta
    17581 agaatttata ttgccctaga agtaaaatac cccaagtgac cacaatcaca atagttcctg
    17641 ccattggaat gcttaaatct aacggaatac ctaaagcaga aaaaataaat tttagaatcg
    17701 ctgctgaaac aatcgccacc gcagctgtgt taatcattgc agcaaaaacg ttaaggataa
    17761 agaaaataat aagataaaac tttccttttt ctttgtagcc ttccaataaa gttttaccgc
    17821 tagctaaggt atattgcaca ccaaagcgga aaaacggata tttaaataaa ttggctaaca
    17881 gaataataat cgccagctgc cagccataaa tcgcaccaga ttgtgtagag gcaataatat
    17941 gcgaaccacc cactgccgca gatgccatca aaatccccgg ccccattgca gcaaatttac
    18001 tttgccaagt tgaatgttct atttgttgtg tcatatagct ttccttatca cattactatc
    18061 aaaacaagat ggtttcattc tacttataaa aaccaaataa aaacactcct ctagaaaaga
    18121 tgttcataaa ataatacaga tattatgctg aatagagagt atgaaatgat aagaaagcat
    18181 ttataaaaat gatttaataa gaattaaaaa ctaagataga atataaaaat ggttttaaat
    18241 aaaattaaaa ataaattgta aatttttatt taccaagatt tttagcaaag ttttcactaa
    18301 aaatgaccgc ttgcaggcaa taaaaaagtg cgtttccgca ctttttacta aaatgattta
    18361 attactcaac caatgctcac cgttgccatt agctggtgga ttaatcggtt ggttattatt
    18421 cttacctgga ataataattt gaggctgatc gtacatacat ttgttgttcg acaatatatc
    18481 acagggaata gcacatacgg caggggcaga aagaagacaa cttgaaccac ctttttgatt
    18541 acaattctct aatgcatttt cttcagcaag actactaacg ataccatacc caaaatcctc
    18601 gaagccttga ccatctttat aaccttgtgc aaaagcaagg cacatattac taaacgataa
    18661 gatcatttgg caattacgac caccgttctt ttcacactgt ttaaacgcat cttgcttcgc
    18721 attttctaaa tttttagacg tattatcagt cacccacatc atattttgtt caggtgacat
    18781 ataaattgat gaccataaac gaggctgtgt tttacgcttt gctaagtcct ctttactggc
    18841 aatggttacc gcttctttat attcaccaca tttaaactct ttttcgacat caccaaaacc
    18901 attcatttca cgaacagaag tgattttatt atcagcgtca gcaaaaagat atgtccaagt
    18961 cgatccacct gtataaacct tatctgttgt cataaatata gtggttgcat tacgaccaac
    19021 ttcataagtt tgcaaattat acaaagctag ttgaataacc ataaacatag cttaattcat
    19081 tatcttttac gcattgaacc gctgtatcag gtaaacgttt acgtgcaaaa aattcagata
    19141 catctttacc acgccaataa acactatcta gtggcttaat cattgtagaa caagcggtca
    19201 aaaataatga caaaataaca aatagcaaag aacttatttt gaaatttata ataattacct
    19261 caaaagaaaa aagagcaagc tttcacttgc tctttttatg ttacttagaa tagcgttgga
    19321 acactaaaca cgcattagta ccaccaaagc cgaagctgtt tgacatcacg gttgttaatg
    19381 ctttgtcttg gcgttcagtc acaatattca taccttgtgc ttgttcatca agggtttcaa
    19441 tattaatgct tggtgcaata aaattattat ctaacattaa taatgaataa attgcctcgt
    19501 gcgcacctgc tgcacctaat gagtgtccgg tcattgattt ggttgatgaa attgctggcg
    19561 ttttatcacc aaagacatta cggatcgccc ctaactcttt tacatcaccc actggagtag
    19621 aagtgccgtg tacgttaata tactcgattt caccatttac agttgccatc gcctgtctca
    19681 tacaacgctc agcaccttca ccacttggcg cgaccatatc gtaaccgtct gaggttgccc
    19741 catagcccac aatttcagca tagattttgg caccacgagc aagagcgtgt tctaactctt
    19801 ccaccacaac cactgcacca ccaccggcaa tcacaaaacc gtcacgatta gcatcataag
    19861 cacggctagc ttttgttggt gtttcattat atttagttga aacagcaccc attgcatcaa
    19921 actcggttgc acattcccaa gaaagttctt ctgcaccacc tgcaaacacc acatcttgtt
    19981 tacctaattg gattaactcc atcgcgtgtc caatacagtg tgctgaagtc gcacaagctg
    20041 agctgattga atagtttaca ccacgaattt tataaggtgt tgccaagcat gctgacacac
    20101 ttgatgccat tgttttggtt actgcgtaag gcccaacggc tttcacacca cgtgggccac
    20161 gtactgcatc acaagctaca agttgactgt gcgccgagcc tgtaccagct ccgatcacca
    20221 aaccggtacg atcgtttgaa acttgttctt cggttaagcc tgagtcttcg attgcttctt
    20281 tcattgaaag ataagcgtaa gccgcagcat ctcccataaa acgatagatt ttacggtcaa
    20341 ttaactcagc cggatttaat ttaatcgtac ctgccacttg gctacgcata cccacttcag
    20401 caaactcagg cacaaattca atgcctgatt tacctgcttt tagtgattcc aacacttctt
    20461 ctttgttgtt accgatactg gaaattacac ctaatcctgt aataacgact cttttcattt
    20521 tgtttccttc atcattttga tctgaaaaat acttgattca gcttacactt gttcactcaa
    20581 ataagctact aaaacttgat tattttacac aatttcatta ctggtctgaa ctctttctat
    20641 caagatagcg gttgaatttc agacattttt tgcaaaatag ggaatgaaat ttaatttccc
    20701 gattttttac cctattacat aataatcact tttccgctaa aatgctaaac agttcacact
    20761 ttagtaagga aagctgacgt gaaaacatta accctgacag ccaacaaaat aacagccgta
    20821 gaaggcgctg ccattggggc gaaccagggg agcttcgccc aaaaattaaa ctctactaaa
    20881 gcacgaattg atcaacttaa tgcataccga atagaacgag ctatcaatgc taataatcat
    20941 cattttatgc atgttttctc tctcattcca ttgcttattc atcttaatca ccctgtgtta
    21001 ccggcttatg ttgaaaatgc accacaaggg atttggcatt ttcaactctc tgattatcaa
    21061 aaacaatttc tggtttctta ccgttttgat gaagcaatct ctgccgatca tttgggcccc
    21121 catcccagct ttgatgctct ttattcgatg ggtagcaccg gtactattac ccaaacaagc
    21181 tgttctgatt tagatttatg gctatgctat ccgaaccatt ttacaattga acaatataag
    21241 ttaatggagc tcaaaattaa taaattgcaa gaatgggcaa agacattcca aatcgacatc
    21301 aatatttatt taatgaaccc agaacaattt aagagccaaa cttataacag tagcgtaacc
    21361 gatgaacaca gtggttcagc acagcatttt tttctattag atgaatttta tcgttcagct
    21421 attttacttg ccggtaagcg tttactctgg ttgcatttac ataaaaatga ataccaaaat
    21481 gttcacaata accctgaaat tgacttaacg gaatggattg atttcggcga tttttccagc
    21541 ctttcaacca gtgaattttt tggtgcaagc ttatggcagc tctacaaagg aattaataac
    21601 ccttataaat cggcaattaa aattttattg ctcgaatgct acgctcacac ttatcctaaa
    21661 acaaagctca tctccaaaga atttaagaaa aaactactaa gtgacaatgc tttggaatat
    21721 cactttgatc cctacttagc catgcttgaa ttggtaacag aacacttaag atcacgcaaa
    21781 gagtgggtga aattagaccg cttgcgagtc tgtttttatg caaaagcggt tgagggagaa
    21841 ataaataaca actggagaag tcgtgattta gacgagctgg ttaaccaatg gtcttggtca
    21901 gaaaaacaaa ttcaattact tcaaaaccgt caacattgga aaattaagca agtgatgaat
    21961 catgagaata tgctgattga tcatttacta caaagttatc gaaatttaat tcattttgct
    22021 cgaaaatttc atattaatcc gagcattatg acaaatgata ctgatatttt aatgcgaaaa
    22081 ctttattctg tatttgaagc acttccagga aaaatatctt taattaatca taaaatatcg
    22141 tccaatttag cagaaaaagc aattacattt attgaagcta aagttggatc tgcgttacaa
    22201 cccggttggt atttagttaa tcaggcacct aaaagtcgtt atgactctga aaatcgttat
    22261 gtccattata ataaaagccc gattaagctt attgcttggg ggtattttaa cggcattatt
    22321 aacgcagcaa ctaatttaca tactgttagc cctaatttag atatcgagaa attgcgacaa
    22381 tttatcaccg acttgcgctt atctttccca attcaagcgc cggaagtgac caatgatgac
    22441 atgcatcacc ctaatgaaat tcgcaatttg gttatagcgc ttaatttagt acaagatcca
    22501 accgaacata tcgatgaact accaaaaaaa gtttatccaa gcgatctgtt taattttggt
    22561 aaggcacaaa aaacgttagt tggtagtgtg agcattattt atcgaaatgt atggaatgaa
    22621 attcgaactc aacattttga cggtgaagat gctattttaa aagcactaaa attggtatcc
    22681 aatcgaattt atcaaggaaa ttcttcacct caatcagtta atgttttttg ctatagtaaa
    22741 tatctacgta gtgagttacg tgattttgtg gcagatttag ttcataaatg tattacaatt
    22801 cagactggtt gtttactgca agagaatgaa tttagcactt taaaagtagc aggaaaaacc
    22861 tggcagtttc tttttcataa aaaaacattt agcattaaac aaattgatga acaacaagcg
    22921 gttgaaaatt taaattcttt tgcaaaaacc aagcaaaatg ctaaaagcga aaatgaaaag
    22981 aaaaaagaat ttccgcagca aattagtgaa tttgccagtg aaggcttttt acagtttttc
    23041 tttgaagaca atgtcgataa tagttttaat gtatatgttg tagatgaacg taataatgtc
    23101 gaaagttact ataactgttt cggcaataaa gaagagaaaa tcaggaaaat caataaatta
    23161 caaaatgaaa aacaattaaa aacagaaaca ccagcatcat ttggaagctt taatcatcca
    23221 caattttatc aacttatttc accaaacggt gagttatgta ttgtgccgtt tcaaagccgc
    23281 cagcatttag attatttagc acaaaaacat cattaatctt atttatatta tacaggtggg
    23341 aattctatgt caggattagt tagtccggaa ttaattaaaa cagtcgcatt acttgcaacc
    23401 agcgtcacta ttgtaccgct atttaaacgc cttggtttag gaagcgtatt gggttattta
    23461 gtcgcaggat gtttaatcgg gccatcgggc attggattgt tccaagaccc tgccgctgtt
    23521 gtgcatatgg cagaacttgg cgtggttatg tttttgttta ttattggttt ggaaatgcac
    23581 ccggaactgc tttgggcgat gcgtaaagcc atcttcgggc gaggtttctt acaagttgcg
    23641 atttgcggta ctttattaac cttagccggc atttacttat taggtttttc caaagaagtg
    23701 gcatttattg ccggtatggg ttttacgcta tcttctactg ccattgtaat gcaagtgctg
    23761 gaagataaag ggataagttc cacgccaaaa gggcaacgta ttgttgcaac tttactattt
    23821 gaagatttag cgattgtgcc attattagcc tcggttgcct ttcttgctcc taaccaagta
    23881 gatgctgaat ccagtactaa ttggtctgct attggtctta gcctagttgc cgttcttatt
    23941 ttggttgcga gtggaaaatg gctgatgaac cctattttcc gtgttatttc taaagccaaa
    24001 gtacgagaaa tgatgactgc cgctgcctta cttgtggtat taggctccgc tcttttaatg
    24061 gaaatcagtg ggctttcaat ggcaatgggg gcattccttg ccggagtaat gctttcggag
    24121 tcttctttcc gccatcaact agaagctgat attgaaccct tccgtggttt acttttaggc
    24181 ttattcttta tgggcgtagg aatgtcatta gacctcagcc tcgtcctcaa taattggcta
    24241 tggttattgg tgattgtagc agtttatgtt atcggtaaag gccttggaat cttcattgct
    24301 gcctctatca cccgattaac actgaatgaa tctattgtgc gaactaccat tatggctcac
    24361 ggtggtgaat ttgcctttgt gctattctca gccgccgcaa ccgctgggat tttaacccca
    24421 gatactcacg ctaccttaac cgctgcggta attgtctcaa tgttgctttc cccacttctc
    24481 attttaatca agcaaggagt gagaaagaaa aaagcgaaaa atgaatccac taatatgaca
    24541 ggggttgaat taccggaaga tttagaagcc aatgtattag tcatcggttt tggacgcttt
    24601 aaccaaatag tctgccaagc cttattagcc aaaggactaa gtgtatcggt tattgattca
    24661 aatactgatc atattcgtgc tgctgctcgt tttggtttta aactttacta tggtgatgga
    24721 gcgagactag atgtacttag ggcatctggc atcgccaatg caaactgcgt aattgttggc
    24781 gtaggcaatc cggaaagaac ggagaaaatc gtagagctga ttaaatctga atacccctta
    24841 gtacctgtat ttgcgagaac ctatgataga caaagtgcgg ttgatttagt caaaaagcac
    24901 cacgttgatt atcacattcg agaaaccttt gaatcagccc tcgcattaag ccaagccgcc
    24961 attgaacgct taggttctag cgaggaagag gcaaaacaaa ttatcagcta tgttcgccga
    25021 ttagatgcag aacgctttaa tgaggaatta ttacacggtt tctccgcaga agttatccgc
    25081 aaatattggg taccaacacc ttgggtaaat ccacaacacg aaggtagtgc acttaatgaa
    25141 gaaacggctg atattttaga agagcttggt gagacagtag aagttataaa agtggatatc
    25201 actgataaaa attaaagaat ttatactttg aatccttatt caagtataag ccttcctata
    25261 catatcgcat aatcactcgt aaaaaagcac cctatcggca taatctgata gggtgttaat
    25321 ggtaataaac catcgcacga tgacaaggag aatatctatg aaaaaaacaa taaatcaatt
    25381 tgaacttaca ttttttaaga aaatttggcg tggagaagtc agccctaatt tttctgcctc
    25441 gttaaccaaa ttcatcgctt tattaatatc ttttgcttta atcgctttca ttaccgcctg
    25501 attaaaatag gcttccgtat ctttatctac tgctgttttt actgcaactg gattttcttt
    25561 tatcggcaac ggtatagccg ttttagctgc cggcgttgct gctttgtttg agctgaaaat
    25621 ttcagtcggt aatccaataa atttagtgcc gttcgagccg gtaacgttga tgtgaatttg
    25681 cccttttaaa ctgtgtgcta cttcaatatc gttaattgct ggtggttgtt taccggttgc
    25741 ttttgcatag gtttttgccg gatgcggcat catcgtggtt ttggctaaat cttgctgcgt
    25801 ggtataaatg agcaagtaaa tataatcttg gttcattgcc ggcgttaaat taagttctgc
    25861 ccctaaacgg ctacctttga gtcctcgctc ttccaataat ttaaactcag aagaggggta
    25921 agttgatgcc acattaaatt gactatccaa cacgactgcc gtgggtacaa aaacattttt
    25981 gtccatcacc gggctttcga tttcaatttc caatgtgcct tgatttgccg gaatacgata
    26041 agctgcaacc gggctggcaa taccggcaaa cgctgtggta aatgcttgtt tgtgttgctc
    26101 gcttagatct gtttttacgg tttgtgaaaa tggcacatct tgccattgaa tttgagctaa
    26161 ttcagccgag ttaatatgaa tagacttacc tgccgagcca tttgctatac tcggagacac
    26221 caccaaaaga tgggcgaaga atattgctgt cgaaagaagc gtttttttca tattaacccc
    26281 taaaaatcgt gaaataggat aaagtgctga aatagtgggt aggtaatcct acccacacaa
    26341 aggtttgatg attaccacca agcttcaaat tgaacaccgg tgataaactc gccgtctttg
    26401 gctttatagc cggcatcggt acgagctttc gtgttgaatt tatcattcca acgtgcataa
    26461 gtaccaaaca cacggattgc agggcgagcc caaatgctat taccagcctg ccattgttgt
    26521 gcaacggtgt attttaccaa gtcatttttc ttgcctgttg cttgatcttt aatgcgatca
    26581 taaccaactt ctaataatgt actcattgta tcattccatt tgtacattgg gcgaatacct
    26641 gctgagtacc aagttttacc ttgtttatta tctagttttg ttttttcgta gattaaggca
    26701 tacattactt caactttatc actcgcttgc actacccctt ggttgattaa acgaagcata
    26761 ttacctttat tatctgcttt cgaaccctgt gcgtgcccat tattccaaga agtcatagag
    26821 tcggttgcat attgtgcagt aaatttattg aaaccaccaa agaagttacc ttgagtgtat
    26881 tccgctgtta ccatataacc gtttttggtt gctccttttt caagggctgc acctttctta
    26941 gcatgtgcat taccgtaatc aaagcctaac tctaacgaac catctttcca aagctcaata
    27001 ccggctaacc gaacatcaaa aatatcgttg taaacatcgg ctttattacg ctgcttatct
    27061 aatttaattt tacctgtgct aggatctaat ttataaactg tagtatatcc aaaagtattc
    27121 gcccctccac gctctgtatc acgagtaacc gctaaagaga gttttccgaa gcctaaatca
    27181 atattttcaa cccctgcacc cggacctgaa atatcccagt aatagaagtc attcatatgt
    27241 acatcatggc gttggtaaaa acgtttacca gcccataagg tggcacctgg taaactatct
    27301 gcaaagtttt tgaactgtac atttaattca cgtagtgctg gacttgttgg tgtccaatca
    27361 ttattgtgaa gcgtaccgcc gtaagcaagg tttgtatcaa agtagataga tttctcacca
    27421 cttttgaata attcctgacc taatttcaat tctgcatagg tatcagattc gttacctaaa
    27481 cggtattttg aaccaccacc atttaccgtg aatgcggatt gctccccccc ccccgatgtc
    27541 caaccgatac ctgaacgtgc atatccgtgg aaatcaaccg ctgatgcact ggctgcgaac
    27601 attgcaccac tgattgcaac tgctaggact gtttttttca taatagaacc tctcttaaga
    27661 tttgatttta cttaggttaa ttattaattg attagaagat tgaaaatacc ctctaaaatc
    27721 agtaataaac tgaaattgtt ataccccttt ttcaacaaac aaacgtttgc aagctgtacc
    27781 gtcttcctta aataaatggc agcgttccgg caatataccg atattcagat cgtcgccttc
    27841 attaactaat accacatcgt tttgacgata aattaaggtt ggttgtttga tttcagggat
    27901 ttcaaggtgg atttgtgttt catttccgag caattccaca acttgcacaa taccgtgtaa
    27961 ggtcacttgg gtttgatccg aaggaactaa atgttccggg cggataccta aagataagtt
    28021 atctcccaca ttcacccctt cgccggaaac cggaatccaa aaattatgat gattcgcatc
    28081 aggtaactca atttttaccc gttccggctc taccgcaatc acttttaccg gtaaaaagtt
    28141 cattttaggc gagccgataa accctgctac aaagcgattt gccgggtaat gataaagttc
    28201 taacggttta cctacttgag caataccgcc ggcatttaat accacgattt tgtccgctaa
    28261 tgtcattgct tcaacttgat cgtgcgtaac ataaatcatt gtgcggttta gttttttatg
    28321 taatttggaa atttctaccc gcatttgtac acgcaatgcg gcatcaaggt tggaaagtgg
    28381 ttcatcgagt aaaaatactt ccggttggga aaccagtgtt ctaccaatag ccacccgttg
    28441 gcgttgtccg ccggaaagtg ctttaggttt tcgatctaat aaatgggcaa gctgtaagat
    28501 ttcggcaact tggttaactc gttgatcccg ctctgcttta cttacacctg ccagctttaa
    28561 gccaaaagac atattttcgg caacgtctaa atgtggatag agagcatagg attggaacac
    28621 cataccgata ccacgttttg aaggctctac ttcattcatc agttttccac cgatatagag
    28681 ttctcctgtc gtaatatctt ccaaacctgc tatcattcgt aatagcgtag atttgccaca
    28741 acctgacggt ccaacgaaaa caacgaattc tccttcgtta atttctaaat taatatcctt
    28801 agagatatga acatcaccat acgattttcc cacgttacgt aatgatacat tcgccataac
    28861 taaacctctt ttctgctttt gcttgttggt
//
LOCUS       DANLRW010000022        28767 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.022, whole genome shotgun sequence.
ACCESSION   DANLRW010000022 DANLRW010000000
VERSION     DANLRW010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 28767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28767
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.022"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(72..743)
                     /locus_tag="PXA71_000772"
     CDS             complement(72..743)
                     /locus_tag="PXA71_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HDL5104904.1"
                     /translation="MKKSTLAIILGGALLTGTAVAHQAGDVIFRAGAVHVKANSSSDA
                     KSKAATGIDVDLEVKNNTQLGLTATYMLADNVGIELLGATPFSHKINAKAKVLESGAE
                     VDLDRVVILKQLPPSLYAQYYFFELTAKVKPYVGAGLNYTRFYHAKSVSPAVTDLSVK
                     KHSFGPVANLGVDVKLTDNIYFNAAAWYTRIKTTAKFKAAGADHEVKVKLDPVVLFAG
                     FGVKF"
     gene            998..3565
                     /gene="clpB"
                     /locus_tag="PXA71_000773"
     CDS             998..3565
                     /gene="clpB"
                     /locus_tag="PXA71_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HDL5104905.1"
                     /translation="MNFEKMTTKLQEALAESQSLAVGKDNPYIEPAHLLYALLKQEGG
                     SIASLFTTLNVDVPTLIRELQQILDRLPKVQGGNTQVSQQLVRLLNQSDKLAQQFGDS
                     FISSELFVLAALDDNGDLGKLFKQFGLNKEKLTQAISQIRGGDTVNNQNAEDTRQALK
                     KYTIDLTERAKAGKLDPVIGRDEEIRRAVQVLQRRTKNNPVLIGEPGVGKTAIVEGLA
                     QRIVNGEVPEGLKNKRVLSLDMGALIAGAKYRGEFEERLKAVLNDLAKEEGQVILFID
                     EIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKV
                     LVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYVSDRQLPDKAIDLI
                     DEAASSLRMEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEEMAAKE
                     REYSELEEIWKAEKSALLGTQHIKSELENARIAMDQARRENDFEKMSELQYGVIPNLE
                     KQLQAVENGEKNADAQLLRTKVTEEEIAEVLSKATGIPVAKMMEGEKEKLLRMEEVLH
                     ARVIGQNEAVDAVANAIRRSRAGLSDPNKPIGSFLFLGPTGVGKTELSKTLANFLFDD
                     PDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRHPYSVVLLDEVEKAH
                     PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSHLIRENAYKGYDVVKEMVM
                     EVVGQHFRPEFINRIDETVMFHSLGQEHIRSIAKIQLQRLIQRLAERGYEVTVTDAAL
                     DHIGKAGFDPLFGARPLKRAIQQELENPLAQQILSGKLLPNKAVTVDYQNGQIVATQ"
     gene            3779..4921
                     /locus_tag="PXA71_000774"
     CDS             3779..4921
                     /locus_tag="PXA71_000774"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDL5104906.1"
                     /translation="MSQLFPEATIRTQAPYRNDIVGSFLRTDALKKAREDFNQQKITR
                     DELREVTRQEVKKLVELQKQHGVKAVSDGEFSRTWWHLDFLAELDGMDWQETEVFNVN
                     FTGHKPKGQTVKIVGDIDFSESHPFVDAYRLLKEAAGDYPTKFTIPAPTMLHIICCVR
                     AEDYQPLPQYQDEQKLYDDIANAYIKAMHKFYDMGLRNLQLDDTSWGQFCAEDKRKEF
                     AARGFNLTDLAEKYVALLNRIVDAKPADMSITMHICRGNFRSSWFSEGGYGPVAEVLF
                     GKCRVDGFFLEYDTERAGTFEPLRHIKDQQVVLGLITSKFGDLEDKNVIIERIKEAAQ
                     IVPINQLCLSPQCGFASTEEGNILTEAAQWAKLNLIKEIAEEVWGS"
     gene            complement(4978..6369)
                     /locus_tag="PXA71_000775"
     CDS             complement(4978..6369)
                     /locus_tag="PXA71_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HDL5104907.1"
                     /translation="MENTPLIEPSKNTRNSLIFVADAILFIILLNTLPFTPEANKGLA
                     LLIFIAVLWLTEALHVTVTALLIPILAVALGLVKSKEALVAFADPTIFLFFGGFALAT
                     ALHIQQLDRMIANKIMALAKGKLSIAVIYLFAVTAFLSMWMSNTATAAMMLPLAMGIL
                     SKLDQKQNHNTYLFVLLGIAYSASIGGMGTLVGSPPNAIVASQLNLTFADWLKYGLPI
                     MLILFPLMIATLYIVFKPNFSVSFDRSFEKIELNRSRIITLAIFVFIALGWIFGDKIN
                     PIISAFLGINGKIASFDTILALIAAALICITRVANWQQIQENTEWGVLFLFGGGLTLS
                     AVLGQTGASKIMADGVVSLIEGGHFYLIGLIVAAFIIFLTEVTSNTASAALLVPIFIS
                     IAQALNMPPVGLALIIGLGASCAFMLPVATPPNAIVFGTGQIKQSEMIKVGFWLNIIS
                     IFVIATVGYLFWL"
     gene            complement(6529..7428)
                     /gene="cdd"
                     /locus_tag="PXA71_000776"
     CDS             complement(6529..7428)
                     /gene="cdd"
                     /locus_tag="PXA71_000776"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HDL5104908.1"
                     /translation="MFRTDITERFEQLKAAKNCEVTQAIIEQLIKQDFHGQLSYEVVD
                     ELCEKFKRSRVELALYCIAIAACYAVTPVSDFNVGAVAIGKNGDFYFGANQEFSGECM
                     QQSVHAEQSAISHAFLAGETLITDVVVNYTPCGHCRQFMNELNSAASLKVHLPHSQNN
                     LLHSYLPDSFGPKDLGIEKVLFDEQPQQFEVKGDHLQQAAIFAANNAYAPYSNAFSGV
                     ALQVGERIVCGKYTENAAFNPTFLPLQSALNYRLFLGLADIPVTRVVLAEAKGSLSSY
                     AMTQALAKSLFGLEIEYLSLQAV"
     gene            complement(7442..8344)
                     /locus_tag="PXA71_000777"
     CDS             complement(7442..8344)
                     /locus_tag="PXA71_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5104909.1"
                     /translation="MISSSLKLGYFSLIVATLFWGGNFVLGKVLSGAVQPITLTYLRW
                     LPAFLILVLLFFRPTWRVMHLLKPRLGVMWVLGLLGVILFPATLYEGLKTTTALNASL
                     YLAISPVLVLFLNRLVFKEKISPIILSGAIISLLGVLWLLMQGKLTRLFSLAINQGDL
                     WAIASTISWAVYCCVIRLRPQGISNTVFLTVLVGLAVLTLTPFFIYEYVAESAKNLAN
                     LTALQWSGIGYLVIGPSILSYAFWNFGIAIVGSAKGAVMTNFTPLFAAMFSIILLNES
                     VHTYHIISAILITAGILICSYKKH"
     gene            complement(8341..8697)
                     /gene="folB"
                     /locus_tag="PXA71_000778"
     CDS             complement(8341..8697)
                     /gene="folB"
                     /locus_tag="PXA71_000778"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDL5104910.1"
                     /translation="MSDKVFIRELTAFASIGAYNWEHTIKQRLVFNIDMAWDFSKAAE
                     TDDVQYCLNYAEVSQKVLDFVESQPFKLVETVAYQLAELLQKEYQLSWIRIELHKPKA
                     VAQASSVGVIVERGHQ"
     gene            8767..9372
                     /gene="plsY"
                     /locus_tag="PXA71_000779"
     CDS             8767..9372
                     /gene="plsY"
                     /locus_tag="PXA71_000779"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDL5104911.1"
                     /translation="MNLIPYLLILTAYLLGSISSAVIFCKLAGLPDPREVGSHNAGAT
                     NVLRIGGKSAALGVLLFDILKGTLPVAMGIYFELSPSQLGFIALAVCLGHIFPIFFQF
                     RGGKGVATAFGAISALSFIVAGGAIGTWLLVFLISGYSSLSAVFTALVVPFYIWWFEP
                     QFTFPVALVCCLLVYRHHDNIQRLWRGQEDKLWDKFKKNRA"
     gene            complement(9446..11353)
                     /gene="parE"
                     /locus_tag="PXA71_000780"
     CDS             complement(9446..11353)
                     /gene="parE"
                     /locus_tag="PXA71_000780"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HDL5104912.1"
                     /translation="MSEKRYGADEITVLKDLEPVQLRPGMYTDTTRPNHLGQEVIDNS
                     VDEALSGFADKIDVILHADNSLEVVDNGRGMPVDIHSTEKISGVELILTKLHAGGKFS
                     NKNYTFSGGLHGVGISVVNALSERVEIQIKRGGEVYSIAFANGVKVEDLTVIGTCPKK
                     QTGTTVRFYPNPKYFDSPRFSVSRLRHLLRAKAVLCPKLTINFIDKINNTEESWYYED
                     GLSDYLSEALNGYETVPNPPFIGDVTAETEAVSWALTWLPEGGELVAESYVNLIPTAQ
                     GGTHVNGLRNGLLKAMVEFCEIHNLLPKGVKLTADDVWNRCAYVLSLKIQEPQFAGQT
                     KERLSSRQASSYVDSTLKDAFSLWLNQNVQTGKLIAEMAISSAQSRMRAAKKVVRKKL
                     VSGPALPGKLADCTAQDLSRTELFLVEGDSAGGSAKQARDKEYQAILPLRGKILNTWE
                     VSSDQVLASQEVHDIAVALGIDPDSDNLEELRYGKVCILADADSDGLHIATLLCALFL
                     RHFPKLVQNGHVYVAMPPLYRIDIGKDEVHYALDEAEKEAILARLAKKKGKPNVQRFK
                     GLGEMNPSQLRETTMEPSTRRLVQLTFDDTVEEGELNTFEIMDMLLGKKRAEDRKQWL
                     QNRGDEADLAV"
     gene            11561..11785
                     /locus_tag="PXA71_000781"
     CDS             11561..11785
                     /locus_tag="PXA71_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5104913.1"
                     /translation="MVVKILKRKSQKTLQQIYTQPISANIKWTNIEALFLELGAEIEE
                     REGSRIAVVLFQQVRVFHRPHPNPDTDKGR"
     gene            11828..12157
                     /locus_tag="PXA71_000782"
     CDS             11828..12157
                     /locus_tag="PXA71_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5104914.1"
                     /translation="MRNIMDINGYKAVIAYDPETELFRGEFIGLNGGADFYADNVIQL
                     KKEGELSLNIFLELCREKGIEPFKQYSGKFNVRLSPELHKAAVIAATAENLSLNEWIN
                     QTLEKSV"
     gene            complement(12196..12582)
                     /gene="cueR"
                     /locus_tag="PXA71_000783"
     CDS             complement(12196..12582)
                     /gene="cueR"
                     /locus_tag="PXA71_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(I)-responsive transcriptional regulator"
                     /protein_id="HDL5104915.1"
                     /translation="MNISQAAEKTGLSAKQIRDYEKAGLLPPTSRTEAGYRFYNATDL
                     SRLHFISNARKVGFSLAQISELLKLNDNPNRSSRDVKQLTEQHIGELEQKIADLNQML
                     TLLKSWSSSCCGNANSECSILNGLNG"
     gene            12671..12871
                     /locus_tag="PXA71_000784"
     CDS             12671..12871
                     /locus_tag="PXA71_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDL5104916.1"
                     /translation="MTITLQLDGLHCGNCVKSVEKALNGVAGVNQVSVTLEPQIAVVE
                     GSAEAQALIEAVEDIGFDAKLA"
     gene            12924..15116
                     /locus_tag="PXA71_000785"
     CDS             12924..15116
                     /locus_tag="PXA71_000785"
                     /EC_number="3.6.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDL5104917.1"
                     /translation="MTSTAHYSPEQQLLIDGMHCAACVRRVEKALLKVEKVEFASVNL
                     ADQTAFVQGNANPEALVAAVVKIGFGAEVLESEEERRIKQQAQTQRVLGHKRTQFMLA
                     LVVGFALVAFGFYKGMTVNETNRSLWLSWAGISLATMYFSGKDFFLGAFSALKNRSAN
                     MDMLVAISTGTAWLYSCWLTLFPQPNAHVYFEASVMILGFINLGKYLELKAKQRSSLA
                     LEKLLDLAPKQAVIFEENIAKTIPAKAIKPQMRVQALTGDRLAVDGILDSGSIWVDES
                     MLTGEALPVEKKIGDKVRAGTLVQDGSGTYIAEQVGSQTALARVINAVRHAQSSKPPL
                     AQFVDKIAAVFVPVVVSIALLSALIWLAVGQDFAFALSIFTTVLIIACPCALGLAIPL
                     STIAGVARSAEFGVLVRNIEALQASSEIDTLVFDKTGTLTTGRMEVSDVLTFNGFEQK
                     RLLQLAKSVEQHASHPIAKAIAKFAENQTACGVTDVQVLKGLGISAKYEGSTIRMGNW
                     QFVGETIQANLASLLPAKEGDFSSKIFVSVDNQLAGVLSVSDQLRPEAKATIHQFQAE
                     GYQCVMLTGDRQQTADYFANALGLDGVIAEVLPEQKAEKIRALQAEGKKVAMIGDGIN
                     DAPALAQANVGIAMHNGSDIAVETADLSLMREGLAPLMQILPFSKKVLKNMKQSLLGA
                     FIYNVIAIPIAAGVLYPFTGWLLNPMIAAIAMTLSSITVVLNSQRLLK"
     gene            complement(15169..15954)
                     /gene="truA"
                     /locus_tag="PXA71_000786"
     CDS             complement(15169..15954)
                     /gene="truA"
                     /locus_tag="PXA71_000786"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDL5104918.1"
                     /translation="MKIALGIEYDGSRYFGWQRQEAVESVQQQLEQALSVVANSPVEV
                     FCAGRTDAGVHGTGQVVHFETQANRPLQSWCFGTNAHLPDDIAVKWAVAVNEDFHARF
                     SATARRYRYIIFNQKLRSAILPKGVTHFHFPLDERKMHQAGQYLLGENDFSSFRAAKC
                     QSNTPWRNIHHLNVSRQGNYVIVDIQANAFVHHMVRNIVGTLLEIGQGRQPVEWAKWV
                     LEQRDREKAAPTAKAEGLYLVEVHYPEHFGIPKTPLGPLFLAD"
     gene            complement(16019..16708)
                     /gene="folE"
                     /locus_tag="PXA71_000787"
     CDS             complement(16019..16708)
                     /gene="folE"
                     /locus_tag="PXA71_000787"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HDL5104919.1"
                     /translation="MTTISPELTITENTLSPEAQKVRQALLAKGIETPTVTHTKDKAS
                     RRAEIQQHMQAVLELLGLDLSDDSLEETPHRLAKMYVDEIFSGLDYATFPKITNIENR
                     MKVSEMVLVDDITLTSTCEHHFVTIDGKVAVAYYPKKWVIGLSKINRVVQFFAQRPQV
                     QERFTEQILTAFQTILETDDVAVYVKATHFCVKCRGIKDTNSYTVTSAFGGVFLEDRE
                     TRKEFLGLLNK"
     gene            16809..17516
                     /locus_tag="PXA71_000788"
     CDS             16809..17516
                     /locus_tag="PXA71_000788"
                     /EC_number="2.7.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid kinase"
                     /protein_id="HDL5104920.1"
                     /translation="MQNIQYLFNADLIPEHQAEFVQSLLTCKNFDNSDRLLGFSKGRG
                     TTWFLDTSAELGINVVLRHYYRGGLFGKIIKDSYFFTRFEATRAYKEFFLLQQMLAWG
                     LPVPRPVAIKIERHFCCYRADIMLEKLENTQDLSKILQSHSLSNEQYEQIGKLIRSLH
                     NHQIHHSDLNIHNILLGNDGKFCLIDFDKCGIEPGENWKQNNLDRLLRSFKKEQGRLN
                     IFFSEENWQAVLRGYTL"
     gene            complement(17571..18668)
                     /gene="apbC"
                     /locus_tag="PXA71_000789"
     CDS             complement(17571..18668)
                     /gene="apbC"
                     /locus_tag="PXA71_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HDL5104921.1"
                     /translation="MNQLNEQQLVEIKAILQQFSHPTLQKDLIALNAFKKAELGGDIL
                     RIEITMPFAWNSGFETLKAETEAKLKQVTGSSGVKWVLNYQIATLKRANKHPAVNGVK
                     NIIAVTSGKGGVGKSTTSVNLALALRAQGTRVGILDADIYGPSIPHMLGAKDQRPTSP
                     DNKHITPITAHGLQSNSIGYLMEEDNATIWRGPMASSALSQLLNETWWNELDYLVIDM
                     PPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAIKGISMFEKVSVPVLGVIENMSMH
                     ICSNCGHHEAIFGTGGAEKIAQKYGTKVLAQLPLHIRLREDLDSGVPTVVAAPEHEIS
                     QAYLALAEKVASELYWQGSVIPSEIMIREVK"
     gene            complement(18665..20212)
                     /locus_tag="PXA71_000790"
     CDS             complement(18665..20212)
                     /locus_tag="PXA71_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5104922.1"
                     /translation="MLKSLQAVTFVKKIAKVTACILLITSCDQLICPQSIQSVWVENR
                     QSDTLLKRAIYSAVFQLDPHKIKASADAAPLRDLLVGLTAYNRKGDVVPAIAQNWFTE
                     DEKEWLFILDEKAVWSNGQPVTAQDFVASWRRLIDPQNHSVLSKYLIYMGIENAKAIE
                     EQIKSVEELGVEALNAHTLRIRLNHPNHQLPEMLAHSALLPTYQGIAPTIDNFVSNAS
                     YRLEKLDAQKMVLKARTQEIPFQTIEYDLITTIQNCSAFDIVENPLLNKKTNIVKFPR
                     LCSYYYEFNFDDPLLAKREIREAIRTMVASANSGQEYGVPSQSVIPHSLVKDREKRWN
                     PVVVEQLLTKAGISPYNPLKLTLLYDENSINIANQVTRALSQSELFNITPKMVDWQTL
                     NKVREQKDYQIARAGWCADYPDPIVFLQKFHSMSPDNHSGYKSEIVDQKLNRLQTETL
                     SAEARESLIQEISEQLYSDVAVLPLFQYHHRVGIVSSLLGIDLNNDSEVIYSKDLKRN
                     LANKDNQ"
     gene            complement(20238..20888)
                     /locus_tag="PXA71_000791"
     CDS             complement(20238..20888)
                     /locus_tag="PXA71_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchE family NAAT transporter"
                     /protein_id="HDL5104923.1"
                     /translation="MDIIINFAIYLQFFIGLFAIVNPFGSLPIFFSMTAHQYEGERNR
                     TSLITAVSIGVILLVSLYFGNLILNAFSISLSSFRVAGGILIVSIAMTMISGKLGEHK
                     QNKEEKNEDITEYENIGVVPLAMPIMAGPGAIGSTIVWGTRYHTWEDYVGFSIAIIVF
                     ALICYILFRYSAPLVKKLGKTGSNVVTRIMGLILMALGIEIIVAGITTLFPVLLVK"
     gene            complement(21010..22881)
                     /locus_tag="PXA71_000792"
     CDS             complement(21010..22881)
                     /locus_tag="PXA71_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HDL5104924.1"
                     /translation="MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQDNSVAKV
                     NGEEISQQLFNNTLNREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQ
                     YAKELKLGISADQIKSEIVNSQMFQQDGKFSNELYQQTLRHNNLSADGYAAIVQEGML
                     QSQLQEGIINSDFNVPAQQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYE
                     ANKTKLLAPEKLAVEYVTLSPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQ
                     VASEAEAQAIEQALKNGEDFATLAKNKSSDTLSANNGGDLGWAKAGTFPKAFEDAVAN
                     LTAGQMSAAVKVDNAYHIIKVLERKPEQVIELAQVKDKIAQTIRQELVLTEYFTVARE
                     MANKAFENNSSLEEVAKAGNVELQKTDLFTRENVPTALQNEKVLKVLFEGELRQNKQN
                     SDALDVGNDANPQTLFVRVSDYDAERPQTFDEAKAAVENFVKAEKAEKALLAKVEENV
                     KALNEGKSVDVKFNAPQTLVYMQAEVENPVLAGTIFAMKKAQDKTTYQMARNQKGDVV
                     IVALDNITEGNAEQFKTLAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQRSSH"
     gene            23063..23332
                     /gene="rpsO"
                     /locus_tag="PXA71_000793"
     CDS             23063..23332
                     /gene="rpsO"
                     /locus_tag="PXA71_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDL5104925.1"
                     /translation="MSLSVEAKAKIVAEFGRDAKDTGSSEVQIALLTAQINHLQAHFA
                     EHKKDHHGRRGLLRMVSRRRKLLDYLKRTDLAKYSETIARLGLRR"
     gene            23404..24273
                     /locus_tag="PXA71_000794"
     CDS             23404..24273
                     /locus_tag="PXA71_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HDL5104926.1"
                     /translation="MAFASLFTLLDDIAAVLDDVSIMTKVAAKKTAGVIGDDLALNAN
                     QVSGKNVVPERELPIVWAVAKGSLINKVILIPLALLLSVFLPQAIIPLLMIGGAYLCF
                     EGVEKLLHRLLHKNNQAHSDETETLSEKDKIKGAIRTDFILSAEIIIIALGVLQDSST
                     LTQILSLSAIGVGITLFVYGLVGLIVKLDDIGLWLMQKKSTFSQAVGKGLLFAMPWFM
                     KGLSVIGTIAMFLVGGGIFTHNLPMIHHFVEQFGISPHFSTLVDFAVGIVVGIIACLI
                     ILPLMKLFSKKAH"
     gene            complement(24363..25628)
                     /locus_tag="PXA71_000795"
     CDS             complement(24363..25628)
                     /locus_tag="PXA71_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme biosynthesis protein HemY"
                     /protein_id="HDL5104927.1"
                     /translation="MFRTLFLMLLLLVGLISGPYLAGNQGYVRIETATTVIEMSIVML
                     VVFFVLAMAVVYLLEWIVTKICRMSNGAYNWFSTRKHKKAQQETLEGLMRMSEGNYSK
                     AEKLFSKNAKHADEPVLNLIKAAEAAQQNGDDLAANKYLIKATEIAGPNNVAVELVRT
                     RILLQQGKLPAARTAIDSLLELAPHSDEVLRLAIQIYKESRAYVALDRLLVEIGQRNF
                     LTAEEYAELEYFVDDGLQDERLQEEGQEGLLSWWENQPNRRRKSVYSRVGVIKRLIDS
                     DDHQSAQEIALETLKKFEDEQLQGLFVQLTRLQIDSDSKLLKVLAKRADKANVKYTDD
                     YARALGYIYTRDGQYQKAKSQFELLLAHDECVADDRIMALHVAEQMGDTLMANRIREE
                     NLKQVNMATQSKVNEPLALPQTATESNSL"
     gene            complement(25647..26957)
                     /locus_tag="PXA71_000796"
     CDS             complement(25647..26957)
                     /locus_tag="PXA71_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HDL5104928.1"
                     /translation="MSRSKKVTEHLEHSAEKVVEEAQQAVDSAGSFAKKEIEEDVVNE
                     AIEKDIQTEMQKAPKEQVVVQKSGGKGLALVALLVALAVGGAGHYMANKKFAEVESQI
                     QAVSAKANQPTTQTMVEMPNFENEKAQIAELVTEYQKALERIKALETAQNGYTQQISS
                     LQLQLQKLNNTSGSDNTFWLLSEADFLLNNAARKVVLDNDIETAKNLLLEADQVLSKA
                     PNTIHIREAIKTDLNTLTALHQIDQNALMQRVANLANKLDDLPILESEQASNSKQDGQ
                     VSDSLADWEKNLEKSAASFLDHFIRVSKRNAADEKAFVAPNQEIYLRENIRLRLQIAI
                     LAVPRQQSELYKKSLQTVGSWVRSYFETSNENVQHFLKELDELAEQTIYVDAPTSLQS
                     LKVIAQQLNKTPEKIEKVEIKAEKELEQAEPVKAEQDAMPLSAQ"
     gene            complement(26969..27733)
                     /locus_tag="PXA71_000797"
     CDS             complement(26969..27733)
                     /locus_tag="PXA71_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDL5104929.1"
                     /translation="MNVLVTRLDSRGQELVDMLNEQQIFAIHQPLFTIEAGKELPLLP
                     SAISRLKSDDYVFVVSPNAVDYAAKTLVDTGFHFRSDLKYFAVGQRTAKYLTEKAEQA
                     VIYPIEFENSEGVLALPEMQNLTDKTILILRADSGRELLAETAVLRGATIQYLECYRR
                     EPVTDDIPEKISLCKRLGVDTIVITSSEILRSLYEQAKADCRAWLFECDLVVVSRRIA
                     KIAKQMGWQEDKIRVSDKADNVTLMNTLLFKVGKSN"
     gene            complement(27733..28668)
                     /gene="hemC"
                     /locus_tag="PXA71_000798"
     CDS             complement(27733..28668)
                     /gene="hemC"
                     /locus_tag="PXA71_000798"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDL5104930.1"
                     /translation="MKDILRIATRQSPLALWQANFVKSELEKHFPQLSVELVTMVTKG
                     DIILDTPLAKIGGKGLFVKELELALLENRADIAVHSMKDVPMSFPEGLGLAVICERED
                     PRDAFVSNNYHSLEDLPKGAVVGTSSLRRQCQLMAKYPHLEVKSLRGNVGTRLSKLDN
                     GEYDAIILASAGLIRLGLQERIRSYISVEQSLPAAGQGAVGIETRANDERILNYIAKL
                     NHSSTACCVMAERAMNTRLQGGCQVPIGGYATLEGDELTLNALVGSLDGSQIIRASAK
                     GHKQEAEQLGILVAEQLLAQGADKILAAVYNENVQ"
BASE COUNT         8497 a         6223 c         5512 g         8535 t
ORIGIN      
        1 gctatattca aacaacttta acaaaaaagg actaatcact aagattagcc caactcgttc
       61 ccaacaaata attagaactt caccccgaaa ccggcaaata agacaaccgg atcaagtttt
      121 acttttactt cgtgatctgc acctgctgct ttaaattttg cggttgtttt aatgcgtgtg
      181 taccaagctg ccgcgttgaa gtagatgtta tcggttaatt ttacatcaac acctaggttt
      241 gctaccggtc cgaaagaatg tttttttaca cttaagtcag taacagcagg gctaactgat
      301 ttagcgtggt agaagcgagt gtaatttaaa cctgcaccaa cgtaaggttt tacttttgca
      361 gttagctcaa agaaatagta ttgggcataa aggctcggtg gtaattgttt taagataaca
      421 actctatcca aatctacttc tgcacctgat tctaaaactt tggctttggc attaatttta
      481 tgagagaaag gggttgcacc taataactca atacccacat tatcggctaa catataagtt
      541 gcagttaagc ctaactgagt attgtttttc acttctaaat ctacatcaat acctgtcgct
      601 gcttttgatt ttgcatctga acttgaattt gccttaacat gtaccgcacc ggcacggaat
      661 atcacatcac ctgcttgatg tgccaccgca gttccagtta ataatgcccc acctaaaata
      721 attgctaaag ttgatttttt cattttcata tcctcaaaaa taattagaat acctataatg
      781 aggtaaactt tagcgaagtg taaatgaaat gaaatagaaa tgaattgata tttatcaaac
      841 ttttaacaca aagataccca acaagagtta ttttatttat ttttgtgatc tttttcacat
      901 ttttacttga aaattgttta ccaagctcca tttagtgttt caacaagaga tgtaaataaa
      961 aatttacact ttctaaactc attgtaagga gaaagaaatg aattttgaaa aaatgaccac
     1021 aaaactgcaa gaagccttgg ctgaatcaca gtcgcttgcg gtaggaaaag ataatccgta
     1081 catcgaaccg gcacatttgc tctatgcgtt gttaaaacaa gaaggtggct cgattgcttc
     1141 tttgtttacc acattaaatg ttgatgtacc gactttaatt cgtgaattac aacaaatttt
     1201 agaccgcttg ccgaaagttc aaggcggtaa cacccaagtt tcacaacagt tggtcagact
     1261 gttaaatcaa tcagacaaac tggcacaaca attcggcgac agctttattt catcagaact
     1321 atttgttcta gctgcacttg atgacaatgg cgatttgggg aaactattta aacaatttgg
     1381 cttaaacaag gaaaaactaa cacaagccat cagccaaatt cgaggaggag acacagtgaa
     1441 taatcaaaat gcggaagata cccgccaagc actcaaaaaa tatacgattg atttaaccga
     1501 aagagccaaa gccggtaaat tagacccggt tatcgggcgt gatgaagaaa ttcgccgtgc
     1561 ggtgcaagtc ttacaacgcc gtaccaaaaa caaccctgtg ttaattggtg aaccgggtgt
     1621 ggggaaaacg gcgattgtag aaggcttggc acagcgtatt gtaaacggcg aagtgccgga
     1681 aggcttgaaa aataagcgtg tactttcgct ggatatggga gcattaattg ccggtgcgaa
     1741 atatcgtggt gaatttgaag agcgtttaaa agcggtttta aacgacctgg cgaaagaaga
     1801 agggcaagtt atcctcttta ttgatgaaat tcacacgatg gttggagcag gcaaaacaga
     1861 cggagcaatg gacgccggca acttattaaa accaagcctt gcccgtggtg aattgcactg
     1921 tgtgggggct acaacccttg atgaatatcg ccaatacatt gaaaaagacg cagcccttga
     1981 acgccgtttc caaaaagtat tggtggacga accaacggtt gaagatacga ttgcgatttt
     2041 acgtggtttg aaagagcgtt atgaaatcca tcatcacgtt caaattacag accctgccat
     2101 cgtggcggcg gcaacgcttt cgcaccgtta tgtgtctgac cgtcaattgc cggataaagc
     2161 gattgacttg attgatgaag ccgcttcaag cctgcgtatg gagattgatt ctaaacctga
     2221 gccgttggat aaattagaac gccgcattat ccaactcaaa ttggaacgcc aagcgttaca
     2281 aaaagaggaa gatgaagcga gccgtcagcg tttagccaaa ttagacgaag aaatggcagc
     2341 gaaagagcgt gaatattccg agctggaaga aatctggaaa gcggaaaaat ccgccttact
     2401 tggtacacag catattaaat cggagttgga aaatgcccga attgcgatgg atcaggctcg
     2461 ccgtgaaaac gatttcgaga agatgtcgga attgcaatat ggcgtgattc caaacttgga
     2521 aaaacagtta caagcggtcg aaaatggcga aaaaaatgca gatgctcagc tcctccgtac
     2581 taaagtcacc gaagaggaaa ttgcggaagt gctttcaaaa gcaacgggca ttcctgttgc
     2641 aaaaatgatg gaaggcgaga aggaaaaact ccttcgtatg gaagaagtat tacacgctcg
     2701 ggttatcggg caaaatgaag ccgttgatgc ggtggcaaat gcgattcgcc gtagccgtgc
     2761 cggactttcc gatccgaata aaccgattgg ttcattccta ttcttaggac cgaccggcgt
     2821 gggtaaaacc gagttaagca aaaccttagc taatttcttg tttgacgatc ctgatgctat
     2881 ggtgcgaatt gatatgtctg aatttatgga aaaacacagc gtatcccgct tagtgggcgc
     2941 acctccgggc tatgtcggct acgaagaagg cggctatttg accgaagcgg ttcgccgcca
     3001 tccatattcg gtagtgttac ttgatgaagt ggaaaaagct caccctgatg tgtttaacat
     3061 tttattgcaa gtgttagatg acgggcgttt aaccgacggg caaggcagaa cagtcgattt
     3121 ccgcaatacg gtagtgatta tgacctcaaa cttaggctcg catttaattc gagaaaatgc
     3181 gtataaaggc tatgatgtgg ttaaagaaat ggtgatggaa gtcgtcggac agcacttccg
     3241 ccctgaattt atcaaccgta ttgatgaaac ggtgatgttc cactcacttg gtcaagagca
     3301 tatccgttcg attgcgaaga ttcagctaca acgcttaatc caacgcttgg cagaacgagg
     3361 ctatgaggtg acagtaaccg atgcagcatt agatcatatc ggcaaggctg gtttcgatcc
     3421 gctgttcgga gcaagaccac tgaaacgtgc gattcaacaa gagcttgaaa atccgcttgc
     3481 tcaacagatc ttaagcggta aattattacc gaataaagcc gttacggtgg attaccaaaa
     3541 cgggcagatt gttgcaacac aataatgtct ccgatggtgc gagcgtcctc gctcgtacct
     3601 tacaagcggt ggatttatcg taaaaatttg caaaaaattg ctcgaaaata accgcttgca
     3661 cagtaaaaat tttcatattg cccttcatta attttcataa gctaatgaag ggctttttat
     3721 tactcttttt gctatcatta acggcgttta taaccaatac aattacaagg agtaatttat
     3781 gagccaatta tttccggaag caacaatccg cactcaagcc ccgtatcgta atgatattgt
     3841 aggcagcttt ctacgtaccg atgcgttaaa aaaagccaga gaagatttca atcagcaaaa
     3901 aatcacccgt gacgaattgc gtgaagtcac acgccaagag gtcaaaaaat tagttgagtt
     3961 gcaaaagcaa cacggtgtaa aagcagtctc tgacggtgaa tttagccgga cttggtggca
     4021 tttagatttc ttagctgaac ttgatggaat ggattggcaa gaaaccgaag tctttaacgt
     4081 gaactttacc ggtcataaac ccaaagggca aacggtaaaa atcgtgggcg atattgattt
     4141 ctccgaaagc cacccttttg tggacgctta tcgtctttta aaagaagctg ccggcgatta
     4201 cccaaccaaa ttcacgattc cggcaccgac aatgttacat attatctgct gtgtgcgtgc
     4261 ggaagattac caaccgttac cacaatatca agacgaacaa aaactgtacg atgatattgc
     4321 taatgcttat atcaaagcaa tgcacaaatt ctacgatatg gggctacgta acttacaatt
     4381 agacgacacc agttggggac aattctgtgc cgaagataaa cggaaagagt ttgcagccag
     4441 aggatttaat ttaactgatt tagcggaaaa atatgtcgca ttattaaacc gtattgttga
     4501 tgcaaaaccg gcggatatgt caattacgat gcacatctgc cgtggtaact tccgttcttc
     4561 ttggttctcg gaaggcggtt atggaccggt tgccgaagta ttattcggta aatgccgtgt
     4621 tgacggcttc ttcttagaat acgataccga acgtgcaggc actttcgagc cactacgcca
     4681 cattaaagat caacaagtgg tactaggctt aattacctct aaatttggcg atttagaaga
     4741 taaaaatgtg atcattgagc gtattaaaga agcggctcaa attgtgccaa tcaatcagct
     4801 atgcttatca ccacaatgcg gctttgcctc caccgaagaa ggcaatattt taaccgaagc
     4861 cgcacaatgg gcgaaactaa acttaattaa agaaattgcg gaagaagttt ggggtagcta
     4921 atcctctata atacaaatag ccgagtaaat actcggctat tttagtttgt tttaacatta
     4981 caaccagaag agatacccaa cagtcgcaat cacaaagata gagataatat ttagccagaa
     5041 accaacttta atcatctcac tttgtttaat ttgccctgta ccaaatacaa tcgcattcgg
     5101 tggggtggca accggcaaca taaaggcgca agatgctcct agaccaataa ttaaggctaa
     5161 tccgaccggt ggcatattta atgcttgtgc tatagagatg aaaatcggca ctaacaaagc
     5221 cgcactggct gtgttagagg taacctcagt taggaaaata ataaatgctg ccacaattaa
     5281 accaattagg taaaaatgcc ccccttcaat tagtgagacg accccatcag ccataatttt
     5341 gctcgcacca gtttgtccta atacagcact taacgtcaaa ccaccaccaa ataggaataa
     5401 taccccccac tcggtgtttt cttgaatctg ttgccaattt gcgacacgag taatgcaaat
     5461 aagtgctgcg gcaatcaatg caagaatggt gtcaaagctc gcaattttgc cattaattcc
     5521 cagaaatgca gaaataatag ggttaatttt atcaccaaaa atccaaccaa gcgcaataaa
     5581 gacgaaaata gccaaggtga taatacgaga acgatttaat tcaattttct caaatgatcg
     5641 atcaaaacta actgaaaaat ttggtttaaa tacgatatat agtgttgcaa tcattaatgg
     5701 gaataaaatt agcataattg gcaaaccata ttttaaccaa tcagcaaaag tcagattcaa
     5761 ttgagaagca acaatcgcat tcggtgggct tcccactaaa gtacccattc caccaatact
     5821 ggcactataa gcaattccta ataacacgaa aagataagta ttatggtttt gtttctgatc
     5881 aagtttactt aaaatcccca ttgccaaagg taacatcatt gcagctgtag ctgtattact
     5941 catccacatt gacaaaaacg ctgttaccgc aaataaataa ataactgcaa tcgataattt
     6001 acctttagct aatgccataa ttttattggc aatcatacga tctagctgct gaatgtgtaa
     6061 tgctgtcgct aaggcaaagc ctccaaaaaa taagaaaatc gttggatcag caaaagcaac
     6121 aagagcttct tttgatttaa ccagccccag tgctacagcc aaaatcggaa ttaataatgc
     6181 cgtaaccgta acgtgtaatg cttctgttag ccataagacg gcaatgaaaa ttaacaatgc
     6241 caacccctta ttggcttcag gggtaaaagg caaggtattt aacaaaataa taaataaaat
     6301 agcatctgca acaaaaatca agctattgcg tgtattttta ctcggttcaa taagaggagt
     6361 attttccata aaaacctcac aaaatataga taatcagtgg tatcactata tataaaaaaa
     6421 cgatataggc aaatataatt gttgcaaaag tgtgaagctc atcaaaaaat ttaacactaa
     6481 aaaataaatt gcttaaagat acagcacctt tgcaaaaata aatcaaaatt acaccgcttg
     6541 tagcgaaagg tattcaatct ctaacccaaa tagtgatttt gccaatgctt gagtcattgc
     6601 ataactactg agagagcctt tcgcctcagc cagcacaact cgagtaacgg gaatatcggc
     6661 aagccctaaa aataatcgat agttcaacgc gctttgcaac ggtaaaaaag taggattaaa
     6721 agctgcattc tcagtatatt taccacaaac aatacgctca cctacttgca gtgcaacccc
     6781 actaaatgcg ttgctgtaag gggcataagc attattggca gcaaaaattg ccgcttgttg
     6841 taaatgatcg cccttaacct caaattgttg cggttgttca tcaaataaga ctttctcaat
     6901 ccctaaatct ttcggtccaa aactatccgg caaatagcta tggagcaaat tattttggct
     6961 atgcggtaaa tgtactttta agcttgccgc actgtttaat tcattcataa attggcggca
     7021 atgcccacaa ggggtatagt tcacaaccac atctgttatc aaagtttccc ctgctaaaaa
     7081 tgcgtgcgag attgcacttt gctctgcgtg aacggattgt tgcatacatt ccccggaaaa
     7141 ctcttggttt gccccaaaat agaaatctcc gtttttgcca atcgcaaccg cccctacatt
     7201 aaaatcggaa actggtgtaa ccgcataaca ggcagcaatg gcaatgcaat ataaagccaa
     7261 ctcaacacga gagcgtttaa atttttcaca gagttcatca accacttcgt aagagagctg
     7321 cccgtgaaaa tcttgcttga taagttgctc aataatagct tgtgtaactt cacagttttt
     7381 cgctgctttt aattgttcaa aacgctctgt aatgtctgtt cgaaacatac tgtacctccg
     7441 tttaatgttt tttatagctg caaatcagta tccctgccgt aatcagtatg gcactaataa
     7501 tatggtaagt atgaactgat tcatttaata aaataatact gaacattgct gcaaagagcg
     7561 gcgtaaaatt agtcattacc gctcctttag cagaaccgac tattgcaatg ccgaaattcc
     7621 aaaacgcata agagagaata gaagggccga taaccaaata gcctatccca ctccattgta
     7681 aagcggtcaa atttgctaaa ttttttgcag attctgctac atattcatag ataaaaaatg
     7741 gcgttaacgt tagaactgcc agccccacta atacggtcaa aaacaccgta ttgcttatac
     7801 cttgtggacg tagccgaatc acacaacaat aaaccgccca gcttatagta gaagcaatcg
     7861 cccataaatc accttgatta attgccaagc tgaataagcg agttagcttc ccttgcatca
     7921 atagccacag cactcccagc aaactgatta ttgccccact tagaataatc gggctgattt
     7981 tctccttaaa aacgagccga tttaaaaata gcaccaatac aggcgaaata gctaaataga
     8041 gactcgcatt caatgctgtt gtcgttttta aaccttcata taaggtagcc gggaataaaa
     8101 ttaccccaag cagacctaat acccacatca cacctaaacg aggttttaat aagtgcatta
     8161 cccgccaagt tgggcgaaaa aagagcaaaa ctaaaattaa aaaagccggc aaccaacgca
     8221 aataggttaa ggtaataggc tgaactgccc cacttaacac tttgcctaat acaaaattcc
     8281 caccccaaaa aagagtagca acgattaaac tgaaataccc caatttcagt gatgatgaga
     8341 tcattgatga cctcgttcta caatcacacc tacactgctt gcttgggcaa ccgctttcgg
     8401 cttatgcagt tcaatccgaa tccaagaaag ttgatactct ttttgtaata gttccgccag
     8461 ttgataggca acagtttcaa ctaatttgaa aggttgagat tcaacaaaat ccagcacttt
     8521 ttgcgatact tccgcataat tcaagcaata ttgtacatca tcggtttctg ccgctttgga
     8581 aaaatcccac gccatatcaa tgttaaaaac caagcgttgc ttaatcgtat gctcccaatt
     8641 gtaagcccca atggaagcaa aagcggttag ttctcgaata aaaaccttat cactcatttt
     8701 tcgtcctgtt ttattttctg aatttctgta aaatatagca caagataaat ttaatcagga
     8761 aaatttatga atttaattcc ctatttattg atcttaaccg cctatttgct cggctcgatt
     8821 tccagtgcgg tcattttttg taagctggca ggcttgcctg acccaagaga agtcggctca
     8881 cacaatgccg gtgcaacgaa cgtactacga attggcggta aaagtgccgc attaggtgtg
     8941 cttttattcg atattttaaa aggcacatta ccggtggcga tggggattta ttttgaactc
     9001 tctccctcac aactcggttt catcgcctta gcggtttgtc ttgggcatat tttcccgatt
     9061 ttcttccaat tccgtggcgg aaaaggcgtt gccaccgcat ttggtgcaat ctccgcatta
     9121 agctttattg ttgcaggcgg tgctatcggc acttggctac tggtgttttt aatctccggc
     9181 tattcttctt taagtgccgt cttcactgcc ttggtcgtac cgttttacat ttggtggttc
     9241 gagccacaat ttactttccc cgtcgcctta gtttgttgcc tattggttta ccgccatcac
     9301 gataatattc aacgcttatg gcgtgggcag gaagacaaac tgtgggataa attcaagaaa
     9361 aatagagcat aaaaataggc atagtgaacc gttcgctatg cctatttgca aattattgcg
     9421 gaaaaatcac cgcttgtctt ctcgactaaa ccgctaaatc tgcttcatct cctcgatttt
     9481 gtagccattg tttacgatct tccgctcgtt ttttacccaa tagcatatcc ataatttcaa
     9541 aggtattcaa ttcgccctct tctaccgtgt catcaaaggt taattgtact aagcggcgag
     9601 tgcttggctc catcgtagtt tcacgcaact ggctcgggtt catttcgcct aagcctttaa
     9661 agcgttgcac atttggcttt ccttttttct tggcaaggcg agctaaaatc gcctcttttt
     9721 ccgcctcatc taaggcataa tgcacctcat ctttgccgat atcaatgcga taaagtggtg
     9781 gcattgccac ataaacgtgt ccgttttgca ccaatttcgg gaaatgacga aggaataacg
     9841 cacacagcaa ggtggcaata tgcaaaccgt ctgaatccgc atcggcaaga atacaaactt
     9901 tgccataacg caactcttct aaattatcgc tatcagggtc aattcccaag gctaccgcaa
     9961 tatcgtgtac ttcttgtgaa gccaatactt ggtctgatga aacctcccaa gtgtttaaaa
    10021 tcttaccacg cagtggcaaa atggcttgat actctttatc tcgagcttgt tttgccgaac
    10081 cgccggcaga atcaccttct accaagaaaa gttcggtacg gctgagatct tgagctgtac
    10141 aatccgccag tttgcccggt aaagccggac cactcaccaa tttcttacgc accacttttt
    10201 tcgccgcacg catacggctc tgggcggaac taattgccat ttcagcaatt aatttacctg
    10261 tctgcacatt ttggttaagc cataaactaa aggcatcttt caaggtgcta tccacatagc
    10321 ttgaggcttg acgggaagac aaacgctctt tggtctgccc tgcaaattgt ggctcttgaa
    10381 ttttcagaga aagcacataa gcacaacggt tccacacatc atcagcggtt aattttaccc
    10441 ctttcggcaa taaattatgg atttcgcaaa actccaccat cgcctttaat aaaccgttac
    10501 gcaagccatt aacgtgcgtg ccgccttgtg cggtcggaat caggttcaca tagctttccg
    10561 ctactaactc gcccccttcc ggcaaccaag ttaatgccca gcttaccgcc tctgtttcag
    10621 cagtaacatc accaataaac ggtggattcg gcacggtttc ataaccgttt aatgcctcgc
    10681 tcaaataatc agataagccg tcttcgtaat accaactttc ttcggtattg ttgattttat
    10741 caataaaatt gatggtgagt ttcgggcaaa gcaccgcttt ggctcgtaac aaatggcgta
    10801 aacgactcac cgaaaaacga gggctatcaa aatattttgg gttcgggtaa aaacgcactg
    10861 tcgtgccggt ctgttttttc gggcaagtac caattaccgt cagatcttcc acttttaccc
    10921 cgttggcaaa ggcaatcgaa tagacttctc cgccacgttt aatctgaatt tcaacccgtt
    10981 cggacagggc atttaccacc gaaatcccca ccccgtgcaa accaccggaa aacgtatagt
    11041 ttttattgga aaatttaccg ccggcgtgca atttcgttaa gataagctcc acccctgaaa
    11101 ttttctcggt ggaatgaata tcgaccggca ttccccgccc gttatccacc acttccaacg
    11161 aattatcagc atgaagaatc acatcaattt tatctgcaaa gccggacaac gcctcatcga
    11221 cactattatc aatcacctcc tgccccaaat ggtttggacg tgtggtatcc gtgtacattc
    11281 ccgggcgaag ctgcaccggc tcgaggtctt tcagaacggt aatttcatcc gccccatagc
    11341 gtttttcaga cattatgctt tctcttaggc ttaaaataaa ataaggctga attttaagga
    11401 atattcagct attttgcaaa attttggtga aaaatgacct gttgttatgc aataaaaact
    11461 atttttgcga tctacatcga aaaaatgagt tttaatttcc ctatttgctt attcattcag
    11521 tatcttaatc tcacttttta ttttaaaatg gtactatatt atggtagtaa aaatcctaaa
    11581 gcggaaatct caaaagacac tacaacaaat ctacacccag cctatttctg ccaatattaa
    11641 atggacaaat atagaagctc tttttctaga gttaggagca gaaatagaag aacgagaagg
    11701 gagcagaatt gcagttgttt tatttcaaca ggtcagagta tttcatcgcc cacacccgaa
    11761 tcctgataca gataaggggc ggtagcgagt attaaaaaat ggttatctga aaacggagtc
    11821 attccttatg cgtaatatta tggatattaa tggttataaa gctgtcattg cttacgatcc
    11881 cgaaacagaa ttatttcgag gtgaatttat cggattaaat ggtggagccg atttttatgc
    11941 cgataatgtc attcaattaa aaaaagaagg tgaactaagt ttgaatatct ttttagaact
    12001 ttgtagagaa aaaggtattg agccgttcaa acaatattcc ggaaagttta atgttcgcct
    12061 ttcgcctgaa ttacataaag ctgcggtaat tgcagcaact gctgaaaatt taagcttaaa
    12121 tgaatggatt aaccaaacgt tagaaaagag cgtgtagcct aattgcaaaa caatcaccta
    12181 ttttgaccgc ttgtattacc cgtttaaccc attcaatatc gaacactccg aattggcgtt
    12241 gccacagcaa gagctactcc agcttttgag caaagtcagc atttggttta aatcggcaat
    12301 tttttgttca agctcaccga tatgctgttc ggttaattgt tttacatctc ggcttgagcg
    12361 gtttgggttg tcgtttaatt taagtagttc gctgatttga gccagcgaaa agcccacttt
    12421 tcgggcattg ctgataaaat gtaatcggct caaatcagta gcattgtaga atcgataccc
    12481 cgcttcggtg cgacttgtcg gcggcagaag tcctgctttt tcataatctc ggatttgttt
    12541 ggcggaaagc ccggtttttt ctgcggcttg gctaatattc attataatcc tctcacttta
    12601 atcgcttgac cttaacctaa ggttaagctt tattatacgc ctgaataatc actcaaaaca
    12661 ggagaaaatg atgacaatta ccctacaact tgatggctta cattgtggca actgtgtgaa
    12721 aagtgtcgaa aaagcgttaa atggcgtggc tggggtgaac caagttagcg taacgttaga
    12781 accgcaaatt gctgtggtgg aaggctcagc agaagcacaa gccttaattg aagcggttga
    12841 agacattggc tttgacgcaa aattagccta attaataagg ggcagaaatt ttgccctaat
    12901 ctgcccaata tttcggagga taaatgacaa gcacagctca ctattcgcca gaacaacaac
    12961 ttttgattga tggaatgcac tgtgccgcct gtgttcggcg agtggaaaaa gccttactta
    13021 aagtggaaaa ggtggaattt gcctcagtca atcttgccga tcaaaccgct tttgtgcaag
    13081 gcaacgccaa ccctgaagcc ttggtagcag cggtagttaa aatcggtttt ggggcagaag
    13141 tgctggaaag cgaggaagaa cgccgaatta aacaacaagc ccaaacgcaa cgagtgttag
    13201 ggcataaacg cactcaattt atgcttgccc ttgtagttgg ttttgcctta gttgcttttg
    13261 ggttctacaa aggaatgacg gtaaacgaaa ccaatcgttc gctttggctc agctgggcag
    13321 gtattagcct tgcgacaatg tatttttcag gtaaagattt ctttcttggg gcattttcag
    13381 cactgaaaaa ccgctcagcc aatatggaca tgttagtagc aatcagcacc ggcacggctt
    13441 ggctctattc ttgttggctc acgcttttcc cacaaccgaa tgctcacgtt tattttgaag
    13501 ccagcgtgat gattctcggc tttatcaatc taggaaaata cttagaactg aaagccaaac
    13561 agcgttcctc gctagcattg gaaaaattgc tggatctcgc cccaaaacaa gcggtcattt
    13621 ttgaagaaaa tattgcaaaa accattccgg ctaaagcaat taagccacaa atgcgggtgc
    13681 aagccttaac cggtgaccgc ttggcggttg atggtatttt agacagtggc tctatttggg
    13741 ttgatgaatc aatgctcacc ggtgaagccc tacctgtaga gaaaaaaatc ggtgataaag
    13801 tgcgagccgg cactctggtg caagacggtt caggcactta cattgccgaa caggtcggct
    13861 cacaaaccgc tttggctcgt gtaatcaatg ccgttcgcca cgcccaaagc agcaaaccgc
    13921 cattggcaca gtttgtagat aaaatcgccg ctgtttttgt gccggtggtg gtttcaatcg
    13981 cattactttc tgcgttaatt tggctggcag ttgggcagga ttttgccttt gcactctcga
    14041 tttttactac cgtgttgatc atcgcttgcc cttgtgcatt ggggctggca attccgcttt
    14101 ctaccattgc cggcgtggca cgttctgccg aatttggcgt gctggtgcga aatattgagg
    14161 cactacaagc aagcagtgaa atcgacaccc tagtgttcga taaaaccggc acactcacca
    14221 ctggcagaat ggaagtgtcg gatgttctca cctttaacgg atttgagcaa aagcgcttgc
    14281 tacaacttgc taaaagtgta gagcaacacg cctcacaccc gattgcgaaa gcgattgcaa
    14341 aatttgccga aaatcagacc gcttgtggtg taaccgatgt gcaagtgttg aaagggttag
    14401 gcatttcagc aaaatatgaa ggcagtacaa tcagaatggg aaattggcaa tttgtaggcg
    14461 aaaccattca agcaaatctt gcctccctat tgcccgctaa agagggggat ttttcctcaa
    14521 aaatttttgt ttcggtggat aatcaactcg ccggtgtatt gtcggtttca gaccaacttc
    14581 gccctgaagc gaaagcaacc attcatcaat tccaagcgga aggctatcaa tgcgtgatgc
    14641 tgaccggtga tcgccaacaa actgccgact atttcgccaa cgcattgggg ttagacggcg
    14701 tgattgcgga ggtattaccg gagcaaaaag cggaaaaaat tcgagccttg caagcagagg
    14761 gtaaaaaagt agcaatgatt ggcgacggca taaacgatgc tccagctctg gctcaagcca
    14821 atgtgggcat tgcgatgcac aatggttcag atattgcagt ggaaaccgcc gatctttcgc
    14881 tgatgcgaga agggctagca ccactgatgc aaattctacc gttctctaaa aaagtgctga
    14941 aaaatatgaa gcaaagtttg ctcggggctt ttatctataa tgttattgcg attcctattg
    15001 ctgccggcgt gctttaccct ttcaccggct ggctactcaa cccaatgatt gccgccattg
    15061 cgatgacatt gtcgtcaatt accgtggtgt taaatagtca aaggttgttg aaataattta
    15121 agcggtcaaa tttgcatatt tttttgcaaa tttgaccgct tgtaatcact aatccgccaa
    15181 aaacagcggc ccaagaggtg ttttcggaat gccaaaatgc tcagggtaat gcacctcgac
    15241 caaatatagc ccctcggctt tcgctgtagg ggcagctttt tcccggtcac gttgctccaa
    15301 cacccatttt gcccattcca caggctgtct gccttgcccg atttcgagca atgttcccac
    15361 aatattgcga accatatgat gtacaaaggc gttggcttga atatcaacaa tcacataatt
    15421 gccttgccga gacacattta aatgatgaat attccgccac ggcgtattag attggcattt
    15481 ggcggcacgg aaagaggaaa agtcattctc gcccagcaaa tactgccctg cttggtgcat
    15541 tttgcgttca tcaaggggaa agtgaaagtg ggtaacacct ttaggtaaaa ttgccgaccg
    15601 cagtttttgg ttaaaaataa tatagcggta acggcgggcg gtggcactaa aacgggcgtg
    15661 aaaatcctca ttcaccgcta ccgcccattt caccgcaata tcatcgggta aatgagcgtt
    15721 agtgccgaaa caccagcttt gtagcgggcg gtttgcttgc gtttcaaaat gcacgacctg
    15781 ccctgtgccg tgcacaccgg catcggttct gccggcacaa aacacttcta cgggcgaatt
    15841 ggcaacaacc gacaacgcct gctctagctg ttgttgtaca ctctctaccg cttcttgtcg
    15901 ttgccagcca aaataacggc tgccgtcata ttcaatacct aatgcgattt tcattttaat
    15961 accttgataa aaagaggggc gaaaaatttt tcgcccccac agtaattgat atttgcaatt
    16021 atttattcaa taagcctaaa aattctttgc gggtttctcg gtcttctaag aaaacaccgc
    16081 caaaggcaga agtaactgta tagctattgg tgtcttttat gccacggcat ttcacgcaaa
    16141 aatgggtggc tttcacatac accgcaacat cgtctgtttc taaaatagtt tgaaaggcag
    16201 ttaaaatctg ttcggtaaaa cgctcttgca cctgcggacg ttgggcaaaa aactgcacga
    16261 cacggttgat tttcgagagt ccaatcaccc attttttcgg gtaataggct accgctactt
    16321 tgccgtcaat agtaacaaaa tgatgctcac aggtagaagt taaagtaata tcgtccacca
    16381 gcaccatttc actgactttc attcggtttt caatattggt aattttcggg aaggtagcat
    16441 aatcaagccc gctgaaaatt tcatcaacat acattttcgc caaacgatga ggcgtttctt
    16501 ctaagctgtc atcacttaaa tctaaaccga gcaattctaa aactgcctgc atatgctgct
    16561 ggatttctgc tcggcgactg gctttatctt tggtatgagt aacagtcgga gtttcaatgc
    16621 cttttgccaa caaggcttgg cgaacttttt gagcctccgg cgaaagcgtg ttttctgtga
    16681 tagttaattc gggcgagatc gttgtcattg gttttcctct caaatgtaag ctgaagattc
    16741 taacaaattg acatcaaaaa aaatagctct aaaatgagct atttcagcca taaacaccct
    16801 ctttatttat gcaaaatata cagtatctct ttaatgccga cctgattccc gaacatcaag
    16861 ctgaatttgt gcagtctctc ttaacttgca aaaattttga caattccgac cgcttgctag
    16921 gcttctcaaa agggcgaggt acgacttggt ttttagatac ctctgctgaa ctaggtatca
    16981 atgtggtgct tcgccattat tatcgtggcg gcttgttcgg taaaatcatc aaagatagtt
    17041 acttttttac tcgctttgag gccacccgag cgtataaaga atttttctta ctgcaacaaa
    17101 tgttagcttg gggtttacct gtgcctcgcc ctgtggcgat taaaatagaa agacattttt
    17161 gttgctatcg tgccgacatt atgctcgaaa agctagaaaa cacacaagat ttaagcaaaa
    17221 tcttgcaatc ccattcttta tcgaacgaac aatatgagca gatagggaaa ctgattcgca
    17281 gtctgcataa ccatcaaatt caccattccg acttaaatat ccataatatt ttgcttggta
    17341 atgatggcaa attttgtctg attgattttg ataaatgcgg cattgagccg ggcgaaaatt
    17401 ggaagcaaaa taacctagac cgcctgttac gctcgtttaa gaaagaacaa gggcgattaa
    17461 atattttctt cagcgaagaa aattggcagg ctgttttgag aggatatact ctctaagaaa
    17521 caataatggc acaagcttag aaacttgtgc catcaaatca tcaatattaa ctacttcact
    17581 tcacgaatca taatttcaga cggaatcaca ctgccttgcc agtaaagttc agaagctact
    17641 ttttccgcta atgcgaggta ggcttggctg atttcgtgtt ccggagctgc caccaccgtt
    17701 ggcacaccgc tatctaaatc ttcacgcaga cgaatatgta gtggtaattg tgctaacact
    17761 ttagtgccat atttttgggc gattttttcc gctccgccgg tgccgaaaat tgcctcatgg
    17821 tgtccgcagt ttgagcagat atgcattgac atattttcaa tcaccccaag cactggtact
    17881 gagactttct caaacattga gatcccttta atcgcatcta ataaggcaat atcttgtggg
    17941 gttgttacta ccaccgcacc ggtcaccgga atttgctgtg aaagcgtaag ctgaatatca
    18001 cccgtacccg gtggcatatc aatgaccaag taatccaatt cattccacca agtttcattt
    18061 aaaagctgac ttaacgcact gcttgccatc gggccacgcc aaatggtggc gttatcttct
    18121 tccattaaat agccgataga attagattgc aagccgtgag cggtaatcgg cgtgatgtgc
    18181 ttgttatcag gagaagttgg acgttggtct tttgctccca acatatgcgg aatagatggg
    18241 ccgtaaatat ccgcatctaa aatccccact cttgtccctt gtgctcgtaa ggctaaagca
    18301 agattaactg aggtcgttga tttccctacc ccaccttttc ctgaagtgac cgcaatgata
    18361 ttttttaccc cattgactgc cgggtgttta ttcgcccgtt ttaaggtcgc aatttggtaa
    18421 tttaataccc attttacacc gcttgaacct gttacttgct ttaatttagc ctctgtttcg
    18481 gcttttaagg tttcaaaacc actgttccac gcaaatggca tcgtgatttc aattctaaga
    18541 atatcgcccc ctaattctgc ttttttaaac gcattaaggg caattaaatc tttctgtaaa
    18601 gtcgggtggg aaaattgttg caagattgct ttaatttcaa caagttgctg ttcatttaat
    18661 tggttcattg gttatccttg tttgctaaat tgcgttttaa atctttgcta taaattactt
    18721 cgctatcgtt attcaaatca atacccaaaa gggaggaaac aatcccaacc cgatgatggt
    18781 attgaaataa tggcaatacg gcaacatcgc tataaagctg ctcgctaatt tcttgaataa
    18841 gtgactctct cgcttctgca ctaagcgttt ctgtttgtaa acgatttaat ttttgatcga
    18901 ctatctcact tttatagccg gaatgattat ccgggctcat tgaatgaaac ttctgcaaaa
    18961 atacaatcgg atcaggataa tctgcacacc agcctgctcg tgctatctgg taatcttttt
    19021 gttcccttac tttatttaaa gtctgccaat caaccatttt aggtgtaata ttaaataatt
    19081 ctgattgaga aagggctcga gtaacttggt tagcaatatt aatgctattc tcatcatata
    19141 acaaagtcag ctttaaagga ttataagggc taattcctgc ttttgttaat agctgctcaa
    19201 ccacaacagg attccaacgc ttttctctat cttttactaa gctatgtgga attacagact
    19261 gactcggaac cccatattct tgcccactat ttgctgaagc caccattgtc cttattgctt
    19321 cacgaatctc tcgtttagct aataatggat catcaaaatt gaactcatag taataagagc
    19381 acaaacgcgg aaatttcacg atattcgttt ttttatttaa taaaggattc tcgacaatat
    19441 caaaagcaga gcagttttgg atagttgtaa ttaaatcata ctctatagtt tgaaagggaa
    19501 tttcttgggt tcgagccttt aacaccattt tttgagcatc tagtttctcg agacggtaag
    19561 acgcattgct cacgaagtta tctatggttg gagcaatccc ttgataagta ggtaataatg
    19621 cggaatgtgc cagcatttca ggcaattggt gatttgggtg atttagccga attctcaatg
    19681 tatgcgcatt taatgcctct acaccgagtt cttcaactga ctttatttgc tcttcaatcg
    19741 cttttgcatt ttctataccc atatagatga gatatttaga caatacagaa tgattttgag
    19801 gatctattaa acgtcgccag cttgctacaa aatcttgtgc agtcacaggt tggccattag
    19861 accacacagc tttctcatct aaaataaaca accactcttt ttcatcttca gtaaaccaat
    19921 tctgagcaat ggccggaacg acatcacctt ttctgttgta ggccgttaaa ccgactaata
    19981 gatctcttaa aggagcagca tctgcagaag ctttaatttt atgtgggtcg agttgaaata
    20041 cagcagaata aattgcacgt ttgagtaaag tatcactctg ccggttttct acccagacag
    20101 attgaatgga ttgagggcaa attaattgat cacaagatgt aataagcaga atgcaagcgg
    20161 taacttttgc aatttttttt acaaatgtaa ccgcttgtaa ggatttcaac ataaactccc
    20221 caaaggttaa ttaagattta ttttacaaga agcacaggaa ataaagttgt aattcctgcc
    20281 acaataattt caattcccag cgccattaaa atcagcccca tgatacgagt aacgacatta
    20341 gatcctgttt tgcctaattt tttcaccaaa ggggctgaat agcggaataa aatataacaa
    20401 attaatgcaa atacaataat cgcaatgcta aagccaacat agtcttccca agtatggtag
    20461 cgggttcccc acacaatggt tgagccaatt gcccctggtc ctgccataat cggcattgct
    20521 aatggcacga caccgatatt ttcgtattca gtaatatctt catttttctc ttctttattt
    20581 tgtttgtgtt cacctaattt accgctaatc atcgtcatcg caatgcttac aatcaaaatg
    20641 ccaccagcta ctctaaaaga gctaagtgaa atgctaaacg cattgagaat cagattacca
    20701 aaatagaggc tgactaataa aattactcca atagaaacag cggtgattaa gctggtgcga
    20761 tttctttccc cctcatattg gtgagcggtc atactgaaaa aaataggcaa ggaaccaaaa
    20821 ggattgacta tagcaaatag accaatgaag aattggaggt agatggcaaa attaataatg
    20881 atatccacaa aaactttctc aaacaacagt gtttcgggcg ctattatatc ggttaatcaa
    20941 ggtagataca aaccaaaagc acccagccta aaggacggtt gggtgctttt tgataaaatg
    21001 aaaggcttgt tagtgtgacg aacgttgctg cataaaatct tcatttacct caattgaagc
    21061 ttttgcacgt agcgattgta agaattcatt acgtaaaatt aaacgattag cttgttcaaa
    21121 ttgtggcgcc aatgtcttaa actgttcagc attcccttcc gtaatgttat ctaaggcaac
    21181 aataactaca tcgccctttt gattacgtgc catttgataa gtcgttttat cttgcgcctt
    21241 tttcattgcg aaaatcgttc cagccaatac cgggttttct acttctgctt gcatataaac
    21301 taaagtttgt ggcgcattaa atttcacgtc cactgatttc ccttcattca aggcttttac
    21361 attttcttct actttcgcca gcaacgcttt ttccgctttt tctgccttca caaaattttc
    21421 aactgctgct tttgcttcat caaaagtttg tggacgttct gcatcataat cactcactct
    21481 cacaaacaat gtctgtggat ttgcatcatt cccaacatct aaagcatcag aattttgttt
    21541 attttggcgt agctctcctt caaacaaaac ttttaatact ttctcatttt gtaaagcagt
    21601 aggtacgttt tcacgggtaa acagatccgt tttttgcagt tccacattac cggctttcgc
    21661 aacttcttca agtgaagaat tattctcaaa ggctttattt gccatttcgc gcgcaactgt
    21721 aaaatactca gttaacacta attcttggcg aatagtttgg gcaattttat ctttcacttg
    21781 tgctaactca atcacttgct caggtttacg ctccaatact ttgatgatat ggtaagcatt
    21841 atccactttc accgctgcac tcatctggcc ggcagttaaa tttgctacag catcttcaaa
    21901 agctttcggg aaagtgccag cttttgccca acctagatca ccaccattat ttgctgataa
    21961 agtatcgcta gatttgtttt ttgccaaagt agcaaaatct tccccatttt tgagcgcttg
    22021 ctcaatagcc tgtgcttccg cttcactagc gacttgaata tgagctaaat gggcttcacc
    22081 tttagttaca taatcggctt tattgcgatc atagtaagtt tgaatttgct cattggtaat
    22141 ctcaactttg ctttccacat cttttggaga aagagtaacg tactcaaccg ctaatttttc
    22201 aggtgctaat aatttagttt tatttgcttc gtaataggct cgcaattctt gctcggaagc
    22261 ggtctgattt tccatttctt ttgcaactga aaattcggct aaacgcactt cacgttgttg
    22321 caacagtaat tttgctaaca atgcctgctg tgccggtaca ttaaaatcac tattgataat
    22381 cccctcttgt agctgggatt gcaacatacc ttcctgcaca atcgctgcat agccatcggc
    22441 acttaaatta ttgtggcgta atgtttgttg gtataactcg ttactgaatt taccatcttg
    22501 ttgaaacatc tggctgttta caatttcaga tttgatttga tcagcactaa tacctagttt
    22561 taactctttt gcatactggc gcagaagctc ttcatcaatt aatccattta ataccgattg
    22621 attaaattga gcagcatact ccgggctatc cattaaatcc caaaagcgac tccccagttc
    22681 agcatttaat ctattttgct cacgattaag cgtgttatta aataattgct gactaatttc
    22741 ttccccattt actttcgcta cagaattatc ttgtgaaatc aatcctgtcc caattccacc
    22801 gattacaaat gaaatagaga ctaatgcaaa aataatttta aagaccggcc catttgtccg
    22861 ctcgtgcatt ttttcaatca tttaaaaatt cctaaattac tcaaaaattg tcgctgatta
    22921 tactctttct caaatgagaa ataaacttgc aaatttttat tgaaatttaa ccgctttctc
    22981 tttaaaattc acagtccctg tcgtagctga gttagagatc ggctattgat gtattatcaa
    23041 cccttaacaa aaggaaatta aaatgtctct aagcgtagaa gcaaaagcaa aaatcgttgc
    23101 tgaatttggt cgtgatgcaa aagacactgg ttcttctgaa gttcaaattg cattattaac
    23161 tgcacaaatc aaccacttac aagcacactt tgctgagcat aaaaaagatc accacggtcg
    23221 tcgtggttta ttacgtatgg tttcacgccg tcgtaaatta ttagactact taaaacgtac
    23281 tgatcttgct aaatattcgg aaactatcgc acgtttaggt ttacgtcgct aatttcaaat
    23341 attagatatg agagccgagc tgaaaagttc ggctttttta taaattttat tcgaggaaaa
    23401 aatatggctt ttgcgtcatt atttacatta ttagacgata ttgctgccgt gcttgatgat
    23461 gtatcgatca tgactaaagt ggctgctaag aaaacagcag gcgtaatcgg tgatgatctt
    23521 gccttaaatg ctaatcaagt cagtggaaag aatgtggtgc cagaacgaga actaccgatt
    23581 gtttgggctg tagcgaaagg ctcattaatc aataaagtga tcttgattcc actagcgttg
    23641 ctgctatcgg tctttttacc gcaggctatt atcccgctat taatgatagg cggtgcatat
    23701 ttatgttttg aaggcgtaga gaaattactc catcgtctat tacataaaaa caatcaagct
    23761 cattctgatg aaaccgaaac cctttctgaa aaagataaaa ttaaaggtgc aattcgcacc
    23821 gattttattc tatcagcaga gattatcatt attgcgttag gtgttttgca agactcttca
    23881 accctaaccc aaattttatc tctctccgct atcggggtcg gaattaccct gtttgtttat
    23941 ggcttagttg gattaattgt aaaactagat gatatcggtt tatggttaat gcagaaaaaa
    24001 agcacattct cacaagcggt tggaaaaggc ttattatttg caatgccgtg gtttatgaaa
    24061 ggactttctg tgattggtac tattgcgatg ttcttagtcg gtggtggtat ttttacccat
    24121 aatttaccaa tgattcatca cttcgtagaa caattcggta tctctcccca tttttctact
    24181 ctggttgatt ttgcagtggg tattgtggtt ggtattattg catgcttaat tattttacct
    24241 ttgatgaaat tattttctaa aaaggcgcac taatccccaa aagcgtagct ttggttaaag
    24301 ctagcttttt atctcttgct ataaaaaaat agcaggtttc aagcctgcta tttttttaat
    24361 tattataatg agttagactc agtggctgtt tgcggtaagg ctaatggctc attaacttta
    24421 gactgagtag ccatattcac ctgtttgaga ttttcctcac gaatacggtt tgccattaat
    24481 gtatccccca tctgctctgc cacgtgcagt gccataatac gatcatcagc aacacattca
    24541 tcatgagcca ataacaattc aaactgagac ttcgcttttt ggtattgccc atctcgtgta
    24601 taaatatagc caagcgctct agcataatca tcggtatatt taacattcgc tttatctgcc
    24661 cgttttgcta atacttttag tagcttactg tcagaatcaa tttgtaaacg ggttaattgc
    24721 acaaataaac cttgtaattg ctcatcttca aatttcttca acgtttctaa agcaatttct
    24781 tgtgcagatt gatgatcgtc actatcaatt aaacgcttga tgacaccgac acgactatac
    24841 accgatttac gacgacgatt tggttggttt tcccaccaag aaagcaagcc ttcctgccct
    24901 tcttcctgta aacgctcatc ttgtaaacca tcatcaacga aatactctaa ctcagcatac
    24961 tcttctgcag ttaagaaatt acgttggccg atttcaacta ataatctatc taacgcaaca
    25021 taagctctgg attctttata aatttgaatc gctaagcgta atacctcatc gctatgaggt
    25081 gcaagctcta gtaggctatc aatcgcagtt cgggcagccg gtaattttcc ttgttgtaat
    25141 aaaattcggg ttcgtaccaa ctccactgca acattattcg gtccagctat ttcagttgcc
    25201 ttaattaaat atttatttgc agctaaatca tcaccatttt gctgagcagc ttccgccgct
    25261 ttaattaaat tcagtacagg ctcatctgca tgttttgcat ttttactaaa gagtttttcc
    25321 gcttttgagt aattcccttc actcatacgc attaaacctt ccagtgtttc ttgctgagct
    25381 tttttatgct tacgagttga gaaccagtta taagctccat tactcatacg gcatatttta
    25441 gtgacaatcc attcaagtaa ataaactacc gccattgcca acacaaaaaa aaccacaagc
    25501 attacaatgc tcatttcaat cacggtagtt gctgtttcaa ttctgacata accttgattt
    25561 ccggctaaat aaggcccaga gattagtcca actaataata aaagcatcaa aaagagcgtt
    25621 ctaaacataa tctattctcc tttttattat tgtgctgaaa gaggcatcgc atcttgctct
    25681 gcttttacag gctctgcttg ctctaattct ttttcagctt ttatttcgac tttctctatt
    25741 ttttcagggg ttttattaag ttgctgagca atcaccttta agctttgtaa tgaagttgga
    25801 gcatccacat aaatagtttg ttctgccaac tcatctagct ctttcaagaa atgttgcaca
    25861 ttttcatttg aagtttcaaa ataacttctt acccaagagc ctaccgtttg taacgatttt
    25921 ttataaagtt cgctttgctg gcgaggaaca gctaaaatcg caatttgtaa acgcaagcga
    25981 atgttttcac gcaaataaat ttcttgattc ggtgcaacaa aggctttctc atctgctgca
    26041 ttacgtttcg atacacgaat aaaatgatct aaaaatgaag cagcactttt ttctaaattt
    26101 ttctcccaat ccgcaagaga atcacttact tgcccatctt gtttgctatt tgaagcttgt
    26161 tcactttcca aaatcggcaa atcatctaat ttattcgcta aatttgcgac acgctgcatt
    26221 aaggcatttt gatcgatctg atgcaatgcg gttaatgtat ttaaatcagt tttgattgcc
    26281 tcacgaatgt gaatcgtatt cggtgctttt gataaaactt gatctgcctc taacaataaa
    26341 tttttcgctg tttcaatgtc attatctaac accactttac gagccgcatt attcaatagg
    26401 aaatctgcct cagataatag ccagaatgtg ttatccgaac cagaggtatt atttagcttt
    26461 tgcagttgaa gctgcaaact actaatttgc tgggtataac cattttgggc tgtttctaaa
    26521 gctttaatcc gttctaaagc tttttgatat tccgtgacca attcggcaat ttgtgctttt
    26581 tcattttcga aatttggcat ctcaaccata gtttgagtag taggctgatt tgctttagca
    26641 gatactgcct gaatttgaga ttcaacctct gcaaactttt tatttgccat ataatgacca
    26701 gctccgccaa ccgctaaagc cactaatagt gcaactaatg ccaagccctt tccgcccgat
    26761 ttttgaacaa ccacttgttc ttttggcgct ttttgcattt ctgtttgaat atctttctct
    26821 atagcttcgt tcactacatc ttcctcaatc tctttttttg caaaagatcc cgctgaatcg
    26881 accgcttgtt gtgcctcttc taccaccttt tcagctgaat gctctaaatg ttcagttact
    26941 tttttagatc ttgacatact cgccacctct agttagattt gcccacttta aataataatg
    27001 tattcatcaa agttacatta tcggctttat ccgataccct aatcttatct tcttgccagc
    27061 ccatttgttt agctatcttt gcaatccgcc ggctcactac aaccagatca cattcaaata
    27121 accatgctct acaatctgct ttcgcttgtt cataaagtga tcttaaaatt tcactactgg
    27181 tgatcacaat agtatctact cccaagcgtt tacataagct gattttttcg ggaatatcat
    27241 cggtaaccgg ctctctacga taacactcca aatattgaat agttgcccca cgcaagactg
    27301 cagtttcagc aagtagctca cgcccagaat cggctcttag aattaaaata gttttatcag
    27361 ttagattctg catttcaggt aatgccaaaa ccccctcgct attttcaaat tctatcggat
    27421 aaatgaccgc ttgttcagct ttttctgtta aatatttcgc agtccgttgc cctaccgcaa
    27481 aatatttcaa atctgaacga aaatggaacc cggtatctac taatgttttt gcagcatagt
    27541 ccactgcatt cggcgaaaca acaaatacat aatcgtctga ttttagccga gaaatagccg
    27601 aaggaagcaa aggtaattct ttaccggctt caatcgtaaa tagcggttga tgaatagcaa
    27661 aaatttgctg ttcattcaac atatctacca attcttgccc ccgactatcc aggcgtgtga
    27721 ccaacacatt cattattgta cgttttcgtt ataaaccgca gctaaaattt tatctgcacc
    27781 ttgagcaagc aactgttccg ccaccaaaat gcctaattgc tccgcctctt gcttatgtcc
    27841 ttttgccgaa gcccgaataa tttgtgagcc atctaacgat ccaactaacg cattaagcgt
    27901 taattcatcg ccctctaatg tagcataacc accaatcggc acttggcaac cgccttgcaa
    27961 acgggtattc attgcacgtt ctgccatcac gcaacaagcg gtcgaactat ggtttaattt
    28021 tgcaatgtag ttcaaaatcc gttcatcatt ggctcgagtc tcaatcccta ctgctccttg
    28081 accagctgcg ggtaatgatt gttccacaga aatatagcta cggattcgct cttgcaagcc
    28141 taaacgaatt aagccggcag aggctaaaat aatcgcatca tactcgccat tatctaattt
    28201 gcttaagcga gtgccgacat tgcctcgcaa tgatttaacc tctaaatgcg gatatttcgc
    28261 cattaattgg cactgacggc gtaagctcga tgtaccgacc acagcacctt tcggcaaatc
    28321 ttctaacgaa tggtagttgt tcgacacaaa cgcatcacgg ggatcttcac gttcacaaat
    28381 caccgcaagc cccaagcctt cgggaaagct catcggcaca tctttcattg aatgcaccgc
    28441 aatatcagct cgattttcta aaagggctaa ttctaactct ttcacaaaca agccttttcc
    28501 gccaattttg gctaatgggg tgtctaaaat aatatcgcct ttcgttacca tcgtaaccag
    28561 ttcgacagat aattgcggaa aatgtttttc taattcgctt tttacaaaat ttgcctgcca
    28621 taaggctaac gggctttgac gggttgcaat gcgtaaaata tctttcataa attctaaaat
    28681 taaaacattg agttaatgaa ttatcctacc actttttagc tgaactgcca aaaataatcg
    28741 tggatttcgc tttgcattta atcaaaa
//
LOCUS       DANLRW010000023        27197 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.023, whole genome shotgun sequence.
ACCESSION   DANLRW010000023 DANLRW010000000
VERSION     DANLRW010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 27197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27197
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.023"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            26..1942
                     /gene="iolC"
                     /locus_tag="PXA71_000799"
     CDS             26..1942
                     /gene="iolC"
                     /locus_tag="PXA71_000799"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HDL5104931.1"
                     /translation="MATVNHQDRPLDLICLGRVAVDFYGQQIGSRLEEMTTFSKYLGG
                     SSGNVAYGTAVQGLRSSMLARVGDEHMGRFLREELQSVGVDTSHLITDKERLTALVIL
                     GIKDKETFPLIFYRDNCADMAITKDDFSEAYIASSRCLAITGTHLSNPKTREAVLTAL
                     EYAGRNEVKRALDIDYRPVLWGLTSLGDGETRYIDSAEVTKSLQEVLHHFDLIVGTEE
                     EFHIAGGSTDTLTALKNVRKVSNAVLVCKRGALGCSVFEGELPNDLDGGLNVYGVRVE
                     VLNVLGAGDAFMSGLLRGYLNNEGWEQACHYANACGALVVSRHGCSPAMPTKRELDDY
                     LTRAESVPRPDLDERLNHLHRVTTRKKQWENLCIFAFDHRKQLVDMANKVGADLARIP
                     KLKQLLLKAMEQTATQSGLPQNQAGILADTTFGQDVLNEITGKDYWIARPIEEPSSRP
                     LELEYGDLGSQLASFPRDHVIKCLAFYHPNDESGLKARQDRKLKEVYQACCRTGHELL
                     LEIILPADMPQSEAFYNQAIAHFYQLGIKPEWWKLPDVSRAQWQAISATIEANDPDCR
                     GILILGLDAPLEVFKDTFEQAKGCEKVKGFAVGRTIFGEPSEKWLAGELDDNTLISAV
                     SEKYRTLIDLWQQR"
     gene            2231..3571
                     /locus_tag="PXA71_000800"
     CDS             2231..3571
                     /locus_tag="PXA71_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HDL5104932.1"
                     /translation="MSCNTSPKRFHASWESIKQHQVPEWYEDAKFGIFIHWGIYSVPA
                     FAPPTCQLGEIDIDEQWFCNNPYAEWYFNSINVKKGPTYEHHIKTYGESFAYNDFLPL
                     WKAEKWQPAEWAKLFAKAGAKYVVLTTKHHDGFCLYPSKYTDFNCMQAGPKRDLMGEL
                     TENVREQGLKMGAYYSGIIDWTYSSAPIFTESQNFSNACPTYEYADYAYKQVVELIDR
                     YKPDVLWNDIGWPKVGEHMLPHLFAHYYNSVQEGVVDDRWNKLWCDFTSKEYKHGVAS
                     RDKKWEMCRGMGLSFGYNQVEDESHLISVKDLISLLVETVADNGNLLLNIGPKADGTI
                     PQEQVERLLALGSWLEINGEGIYKSRCSQHQTEQIGDVTYRYTKVGADLYLYIDGLTE
                     AQISLPLSVYGELQALNTELKFTIENTAQGRVLHIQNYQPDWYVLGFKIADGEK"
     gene            3574..4914
                     /locus_tag="PXA71_000801"
     CDS             3574..4914
                     /locus_tag="PXA71_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL5104933.1"
                     /translation="MSVSQRFIDFMNAHVAPVARRMENQPHISAIRDGFIVVLPFLIV
                     GSFIMILLIPPFDENTQNAFGQAWWRFANWASPYGWNFFQMSFNAISLFTSASIAYNL
                     AKAYKREPLPAAFLSVMAFLLVAAPVKDGMMDIKFFGGIGLFSAIFIAIYSVEMTRLL
                     EFLKIKIRLPKEVPHAVAESLNIVIPILAILLTLYPFAIWVESATGRNIPQLIMDFMA
                     PLIAVSDSLGAICLFVIATHLLWFLGINGSLVLMQLWTPFLLQNMAANLAAFQAGEPL
                     PFIITNSFWDFYIVHGASGGVIALAFLLVRSKSAHLRSIGKIGLVPSFFSIGEPIVYG
                     VPMVVNPLFFIPLIFAPLANAVIAYLILDFNLIHRVYLMAPWTTPAPIGAYLVSAGDI
                     WAPILSIALIILDIVIYYPFFKMYEKVCVEKEKAQNLDEKAQQELLEKARMAAQ"
     gene            5052..5876
                     /locus_tag="PXA71_000802"
     CDS             5052..5876
                     /locus_tag="PXA71_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL5104934.1"
                     /translation="MNGPTQLAHFQEQIRKEYDGLSKRLKQVAQYVLDNGNSVVFDTV
                     STIAERADVPPSTLIRFANAFGFSGFNEIKQLYRQDMMEGTSRYTERVQLFRQIEPLD
                     EQNSELNHILDVFVQGNTQALQQLSTQVSEEQLAQTVDILHNAKRIFIVGLKRSFSIA
                     NYLNYALHHLDYDVFMIDGSGGMFDEQLSRIREGDAVIAVSFSPYANETLNVVTATAR
                     PGVKHIAITDSQLSPLLSFSDVSFIIKEAQVSGFRSQCATMTLAQTIAVSLALKKA"
     gene            complement(5920..6162)
                     /locus_tag="PXA71_000803"
     CDS             complement(5920..6162)
                     /locus_tag="PXA71_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5104935.1"
                     /translation="MSDKSIILEIINALGNKENIKQVEACLTRLRVVLHNNGLLNKSA
                     LKKLGAVDVIKVGDTQQIIFGAKAGQYRDEINALIG"
     gene            6427..6675
                     /gene="rpsP"
                     /locus_tag="PXA71_000804"
     CDS             6427..6675
                     /gene="rpsP"
                     /locus_tag="PXA71_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDL5104936.1"
                     /translation="MVTIRLTRGGAKKRPFYQIVVVDSRSPRDGRFIERIGFFNPLAA
                     GQAERLRLDVAKVDAWVAKGADLSDRVASLVKEARKAA"
     gene            6708..7235
                     /gene="rimM"
                     /locus_tag="PXA71_000805"
     CDS             6708..7235
                     /gene="rimM"
                     /locus_tag="PXA71_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005626427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HDL5104937.1"
                     /translation="MSEQKIEVVGKLGSTYGIRGWLRLYSSTEQTESIFDYQPWFLKI
                     KGQWQQVELESWRYHSNDLIVKLKGTEDREAAQLLTNAEIGVDLSVFPELEEGDYYWH
                     DLIGCSVVNLEGYTMGTVAEMMETGSNDVLVVRNNGKDAFGKQERLIPFLYEQVVKRV
                     DLATKTITVEWDAGF"
     gene            7280..8035
                     /gene="trmD"
                     /locus_tag="PXA71_000806"
     CDS             7280..8035
                     /gene="trmD"
                     /locus_tag="PXA71_000806"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDL5104938.1"
                     /translation="MWIGIISLFPEMFKAITDFGVTGRAVKQNLLQVECWNPRDFTFD
                     KHKTVDDRPYGGGPGMLMMVQPLRDAIHAAKKAALAVEGGEAKVIYLSPQGRKLDQNG
                     VQTLASNQKLILICGRYEGVDERLIQTEVDEEWSIGDYVLTGGELPAMTLIDAVARFV
                     PGVLGKQASALEDSFAEGLLDCPHYTRPEVLDGMPVPEVLMSGHHEQIRKWRLEQSLE
                     RTWLRRPELLDSLALTDEQRVLLAKIKKQHKIS"
     gene            8062..8412
                     /gene="rplS"
                     /locus_tag="PXA71_000807"
     CDS             8062..8412
                     /gene="rplS"
                     /locus_tag="PXA71_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDL5104939.1"
                     /translation="MSNIIKQLEQEQLKQDLPSFRPGDTLEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTLRKVSNGVGVERVFQTHSPVIDSISVKRKGAVRKAKLYYLRE
                     RSGKSARIKERLGD"
     gene            8568..8924
                     /locus_tag="PXA71_000808"
     CDS             8568..8924
                     /locus_tag="PXA71_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104940.1"
                     /translation="MKQLSIRLPDDEFTFIKTFASAHKLTLQNFVMSAIQAKVAEMSA
                     KNKISEESNIHQPLSKDEKIMLNEAKVFYSARSHLKAENVILPSDFMEQIKSGCGAEK
                     MAEMMGYTKEDWESMK"
     gene            8926..9249
                     /locus_tag="PXA71_000809"
     CDS             8926..9249
                     /locus_tag="PXA71_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104941.1"
                     /translation="MGQITFSNIFTKVIFENVLSASTKEKIKQMLFQSVVALPPLHSE
                     RKMILQLKKQKITIFYQVIEEQSVQILAYQFGGTDKLTGVSKAHFKTLDAIFQMTDEE
                     KEGKF"
     gene            complement(9259..9591)
                     /locus_tag="PXA71_000810"
     CDS             complement(9259..9591)
                     /locus_tag="PXA71_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5104942.1"
                     /translation="MQIEQYQQWVRQFYQQQGWYERSPFMRVTYLAEEIGEVACAVRA
                     IEIGRERPDETEASQQQKRDNLIEELGDVMDNLFVLADKYGISMTEVLERHQAKFEKR
                     YLQKNMEK"
     gene            complement(9684..10880)
                     /locus_tag="PXA71_000811"
     CDS             complement(9684..10880)
                     /locus_tag="PXA71_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDL5104943.1"
                     /translation="MNIPFCLPENISPETFLREYWQKRPLLIRNGLPQIVGLFEPEDI
                     LELALEEEVTARLIQCENEKWSVKSSPLVEEDLEELPVQWSVMVQNLEQWSPELGELW
                     QAFGFIPQWQRDDIMVSCSPLNGTVGKHYDEYDVFLVQGYGQRRWQLGKWCDPSTEFK
                     PNQPIRIFDDMGELVMDEVMNPGDVLYVPSRMAHYGVSESEQGLTFSFGLRYPNATDL
                     LENLCKTIEQQADNINSSEFHLPFRLTPNEQPNALLDPKMVKMFKHQLIDLLQNSEQF
                     DELLTHSVATAASSRRYELLQTDNEYYPDEVQEILEAGGWLQQDANVKILYTENPQRV
                     YVNGEWIDELNEAEMALLIRIANGDSISWNKLASKVQDQAELELMLDTICDWLDSGWI
                     ILSEAE"
     gene            complement(11029..12372)
                     /gene="accC"
                     /locus_tag="PXA71_000812"
     CDS             complement(11029..12372)
                     /gene="accC"
                     /locus_tag="PXA71_000812"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDL5104944.1"
                     /translation="MLEKVVIANRGEIALRILRACKELGIKTVAVHSTADRELKHVKL
                     ADETICIGPAPSVKSYLNIPMIIAAAEVTNADAIHPGYGFLSENANFAEQVEKSGFIF
                     IGPTADVIRLMGDKVSAINAMKKAGVPCVPGSDGPVGNDPKKNKEIAKRIGYPVIIKA
                     SGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAFNNDMVYMEKYLENPRHIEIQVLADT
                     HGNAVYLAERDCSMQRRHQKVVEEAPAQGITPELRQFIGERCANACREIGYRGAGTFE
                     FLYENGEFYFIEMNTRLQVEHPVTEMITGVDLVKEQLRVAAGLPLSITQDDIKVKGHA
                     IECRINAEDPNTFLPSPGKITRLHVPGGLGVRWDSHIYSGYSVPPHYDSMIGKLITFA
                     ENRDIAIRRMENALSETIVEGIKTNIPLHTQILADKEFRKGGTNIHYLEKKLGLK"
     gene            complement(12444..12911)
                     /locus_tag="PXA71_000813"
     CDS             complement(12444..12911)
                     /locus_tag="PXA71_000813"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDL5104945.1"
                     /translation="MDIRKIKKLIELVEESGITELEVSEEEGTVRISRAAPAVAPAAV
                     QYAAAPVVAPAAPQVASTVPVAAPAEAPKAAETSGHAVLSPMVGTFYRSPSPDAKPFV
                     EVGQTVKIGDTLCIVEAMKMMNRIESDKAGVVKEILVNDGEPVEFDQKLFIIE"
     gene            complement(13164..13946)
                     /locus_tag="PXA71_000814"
     CDS             complement(13164..13946)
                     /locus_tag="PXA71_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDL5104946.1"
                     /translation="MAVKNEQFIVICNGVFRLFGNIVKILSYPFHALFPKKRFTIPEY
                     SPAKIQSSIPSKITKTIWQTNYSNKVTLPMYANYLFNRLMSLSYDYRYVSTEEREAYI
                     KANADERTFNAYSKLTDGAAQADFWRIFTLLREGGIYIDIDGHLVYPLSKIIGENDSE
                     VLIKRRDKYTNFFLASEAGNWILKDTLELIISNIENRRIEGGVFVMTGPDTLNNAIGD
                     KEVNFRRDKVTCAQGTFTNEYFQYIDKPGSKWNYKKNEDLLK"
     gene            complement(13956..14393)
                     /gene="aroQ"
                     /locus_tag="PXA71_000815"
     CDS             complement(13956..14393)
                     /gene="aroQ"
                     /locus_tag="PXA71_000815"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HDL5104947.1"
                     /translation="MKKILLLNGPNLNMLGKREPQIYGSQTLADIENHLKKLAAAQDV
                     ELESFQANGEEPIINRIHQAFQHTDFIIINPGAFTHTSVAIRDALLSVSIPFVEVHLS
                     NVHSREPFRHHSYLSDIAKGVICGLGAKGYEYALDFAISHLKA"
     gene            complement(14479..14847)
                     /locus_tag="PXA71_000816"
     CDS             complement(14479..14847)
                     /locus_tag="PXA71_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5104948.1"
                     /translation="MAFTIRKMVEQDTHQVFPLMQKLAVFEHYIDSFAITPEVVMESG
                     FRKSPPDFYCLVAENASNIIGILVYYFLPYTAQNRPAIYMKELYVDETARNQKVGEAL
                     MQALKNEAKAHHCKTIKSLE"
     gene            complement(14907..15731)
                     /gene="dapD"
                     /locus_tag="PXA71_000817"
     CDS             complement(14907..15731)
                     /gene="dapD"
                     /locus_tag="PXA71_000817"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HDL5104949.1"
                     /translation="MSLQAIIEAAFERRAEITPKTVDAETKAAVEEVIAGLDNGSLRV
                     AEKKDGEWVVNQWVKKAVLLSFRIADNEIIDGAETKFYDKVPTKYGNYTEEQFKADGI
                     RAVPGAVVRKGSHIEKNVVLMPSFVNIGAYVGEGTMVDTWVTVGSCAQIGKNVHLSGG
                     VGIGGVLEPLQANPTIIGDNCFIGARSEIVEGVIVEDNCVISMGVFIGQSTKIYDRET
                     GEVHYGRVPAGSVVVSGSLPSKDGSHNLYCAVIVKKVDEKTLSKVGLNDLLRSIDE"
     gene            15879..16541
                     /locus_tag="PXA71_000818"
     CDS             15879..16541
                     /locus_tag="PXA71_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HDL5104950.1"
                     /translation="MENFANLLTGKTREHLVPLPNALSDKHYLQPQVVEAFLTLQHAA
                     KQAGFNLQPASTFRDFERQKGIWNAKFRGERKVHDDNGVAIDMAALSDLEKCKAMLRW
                     SAVPGASRHHWGTEIDIFDPDLLPENTPLLLEPWEYLEGGYFADLTKWLHVNAETFGF
                     YFPFDGKHSRVGFEPWHISYRPISNEYEQRFNDEILKAAWQDEEVAGKECLLEHFEEL
                     LK"
     gene            16538..17290
                     /locus_tag="PXA71_000819"
     CDS             16538..17290
                     /locus_tag="PXA71_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5104951.1"
                     /translation="MIQLINETQQHDKFRQICDKWQLVEDKSSPLALVLTEERLELRK
                     LDEPKLGAIAVNFVDGTMAHRRKFGGGRGEAVAKAVGIKGDYLPTVIDATAGLGRDAF
                     VLAAVGCKVLLVERNPIVAALLEDGLNRAYQDVEIGSFMQERMILADVRDISQLDPQS
                     QMAEVVYLDPMYPHKQKSALVKKEMRVFQHLVGADLDSDSFFLPAKGLAKKRVVVKRP
                     DYAPFLAEQKPDFSHTTKNHRFDVYLSHLKND"
     gene            17381..18217
                     /gene="ftsN"
                     /locus_tag="PXA71_000820"
     CDS             17381..18217
                     /gene="ftsN"
                     /locus_tag="PXA71_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HDL5104952.1"
                     /translation="MPQRDYVARSNEKKSKKNQKESNVKKILMRIIGVILFFGIGLWF
                     LKSSAPVPTVPSAPQPANSQTKSELPSRPEETWSYIRDLETRTVITDNSQTSQERLAQ
                     LTAEQKQQIEERRKQEEARLAAEQAQQKPATDVSATELAPKTEEVKSLTEEELAAKKA
                     QEQALAQKQAEEKRRQAELKKQQEAKKEQPAKIVASAATLADKAANQAGKFGLQCGAF
                     KNKAQAENMQARLAMAGFNARIASSADWNRVFVGPIGDRAATSRAQSNARSVAECVIV
                     AM"
     gene            complement(18259..19440)
                     /locus_tag="PXA71_000821"
     CDS             complement(18259..19440)
                     /locus_tag="PXA71_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL5104953.1"
                     /translation="MKTELDMIVIGGGMIGAATALGLAKQGLRLALLEKNPLPTFNPD
                     SDYDLRISAISMGSIQLLEKLGVWEQIVAMRSTPYTQLETWEIDGFNTLFSAADLGLE
                     KLGDMVENNVIQIALWEQLKQYPNCLQAVGFEQIFANKAGEYWEVTVDGNTFAAPLLI
                     AADGANSQVRQWAGIGLTAWQYRQHCLLATVTTEKPAPSGTWQQFYPTGPRAFLPLSG
                     NHGCVVWYDSPQKIAELKMLPAEKLGVAIEQHFPSRLNAELGNIQVQASGAFPLTRQH
                     AQHYVQNGVVLVGDAAHTINPLAGQGVNLGFKDVKTLLEVIEQAVKKGKNFASEQVLQ
                     RYEQKRKPDNLLMQTGMDVFYKAFKTDLLPLKIARNVGLVLADKVSPIKKQALKYAIG
                     I"
     gene            19547..19885
                     /locus_tag="PXA71_000822"
     CDS             19547..19885
                     /locus_tag="PXA71_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104954.1"
                     /translation="MSCKTHANHEHEHGEGCGHTAIKHNDHIDYLHDGHLHHNKHGDH
                     YDEHVLEVNETNPADCNAAHCCGDHVHGEVCGHEAVPHGDHIDYIVNGRLHHQHGDHC
                     DDHGPVEIVK"
     gene            20017..20886
                     /locus_tag="PXA71_000823"
     CDS             20017..20886
                     /locus_tag="PXA71_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HDL5104955.1"
                     /translation="MTLAIVYSRASIGVEAPLVTIEVHISNGQPKLTIVGLPEATVKE
                     AGDRVRSALLNANFIYPPQRITINLAPADLPKEGGRFDLPIAIGILAASGQIDSDLLT
                     QFEFLGELALTGHLRGVHGTIPAVISADKAKRQMILAKQNANEASLVSNATTYFAGSL
                     LEVVNMLNKRDKLPICQHISQHSAEIRPLVSRDLTDIIGQQHAKRALMIAAAGQHNLL
                     FLGPPGTGKTMLASRLADLLPEMTDEEAIETASVTSLVQNELNFQNWKQRPFRSPHHS
                     ASMVALVGGGCEN"
     gene            20978..22789
                     /locus_tag="PXA71_000824"
     CDS             20978..22789
                     /locus_tag="PXA71_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104956.1"
                     /translation="MFYLNNDNFKREPYRGYCPSHLEKLFTKPHLDIRGNGYYYPDNE
                     YVVAWYESDFIFKSRKAQAHAKVKLVNLTCPKYTGKNSAEYLSVLYISVPLNYLHYFT
                     IGSIWKGGVAKEQFALEEFYITVEAENQDGKRENLSIVSFGESEENGLEKPFDYTIYT
                     IPTEYHNYGDDLNRLLSISYQNQKFIIHPLHIFMMHYGYSTDIKRILATYPLDEVRER
                     LFIDKVVENFDVERYVVLPKYFVKKDAIFLYHFKYDEETTGTRVKKLVSQFRLNIHNQ
                     THPIEIDFWHTQKVELKIRGVRLGNAVLCAEIIGLNQPEGEDITLVLSQSKREKSGNK
                     TEEQNNEVNNVPITRVYTREPELDELPLTDNSPDNRTVEYNKRQFELLGRQRQIRALK
                     KAREESNQKMKALTPDEIDSLGVGESDGRNGKVGLAFCFLDDTPVGKSSKLYKLWQHA
                     KAVAEWNHGEAHWYTPNLGFRNDDELLPVSLETNKCFDYPEIAIIIRLQIYGETFFLI
                     DFSMKQRDISIRGLGYKPDPNEDFLYESDMSKSELSELLSAVHHHEHLPKEYIEKKNK
                     EKTKLTTFNHSEAESSNWAYNAVQKLTSRAITKPTYF"
     gene            22798..25578
                     /locus_tag="PXA71_000825"
     CDS             22798..25578
                     /locus_tag="PXA71_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDL5104957.1"
                     /translation="MNAEQRVIVTPTFWGKFFGKIKSVELQQNKVIVTDKKNNITEHD
                     LGKTFDFPAIQKSFFGTKLFFKDDSTEVVLSKLAKKQTDSLLLEIEKVVASNIKVKVK
                     EGFQHFANLAENQYLRDSDIPTLNDRVRLSVLSYGDNKEHFQKYFDESLVKKIQYISS
                     LFPVNAINAQTIRREYEQHVLNHRKHFFDVIESNPLTEQQRLSVIRNNDINMVLAAAG
                     TGKTSVMVAKALDLIDSGACKSEDILILAYNRDAATELSERLQERAREANLDLENSPS
                     ISTFHALGRRIIKECGKSVHLSKFAEDPMKLDRWFNKWLEDYIKEDPDNLAKFIQLAY
                     QPIDPFQFKTKDEYDRYVNDNDYRTLQGERVRGYQELLIANWLFSHSVEYEYEPRYVS
                     KRRIEIGFDYKPDFSLGDGVYLEHFGIDRQGRTRADINAQEYNANIQRKRELHAEHNT
                     TLLETYHYNWVENTLYKRLEQLMNEQFIPLKPKSQQEILDALNESGIFKENKNRYLKC
                     LQAIRTERLDYQQILKRLTDAKIVYAKEYATLLMRIHDAYVKELRSANEIDFDDMILL
                     ATQLVKTGEFKPKWKHILVDEFQDISMARLELLKEIYTKGPRPIWTVVGDDWQSIYRF
                     SGGKLEVTTRFNDMVGSHTLSKLEKTYRYNNSIADTAGQFIMQNPEQYQKNVVTHTKV
                     ADSCVHLYDSHVVKDEKSEANISLKASAILKLIRQKAPEATVAILARYRYLLEDAKSV
                     IKDKNVKFWTFHGSKGLEADYCILLGFFQGKVGFPNQNKEEAVVEALLPMLDSFPHSE
                     ERRLFYVALTRAKKESYLIADANAPSEFINELLSPKYKIDIVSKRFQERYRTIFKCNE
                     CSTGYFVMKQGKFGQFYSCTSGEVCRSSPRICEKCGRPMKLREGKFGQFWGCSGYGIK
                     GDQCTNTRKYFM"
     gene            25600..>27197
                     /locus_tag="PXA71_000826"
     CDS             25600..>27197
                     /locus_tag="PXA71_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5104958.1"
                     /translation="MDLFESKKQLIELIKKYDSDKEIYSSSSYNESQLRTDFLDPFFG
                     LLGWDITNSKNKLTSEREVIVEEPLKEKVSENVKKPDYTFRFNSQRKFFVEAKKPSVK
                     IKTDPLPAHQVRRYGFTAKLSISVLSNFEYLAIYDCSEIVDVQQDALYARVRLYHYTE
                     YVKFFDEIMNLLGRESVYSGHFDNEWREISQKIENSKQTVDELFFEQINKWRHVLGSE
                     LLKINPCISNNELNDAVQDYINSIIFLRVCEDRSIECYESLLDVTKLEKHKKFKTNLE
                     KADKKYNSGLFKLQYIDQLINSTSSNLWSILKELYYPYNSYSFSVLPSDLLGRIYEQF
                     LGDELVVNNNELILQPKDYNLNRDIISTPNFIIRRIIDYTVNEYCKGKNDSNIYQSKF
                     ADIACGSGAFLLEVYQRLQDILVDYYIQNDKNKLEETGVNQYKLRFEDKKNLLLNCVW
                     GVDKDFNAVKACRFGLLLKLLENESDVTIANKISILPNLDQNILWGNSLIDLSDKLTE
                     KEKLKVNPINLQEYKFNVIIGNPP"
BASE COUNT         8214 a         5440 c         5770 g         7773 t
ORIGIN      
        1 aatttacttg ttgtaaggag cggttatggc aacagttaat catcaagatc gtccattgga
       61 tcttatctgt ttagggcgtg tggcggtgga cttttatggg caacaaatcg gttcccgttt
      121 ggaagagatg accacatttt caaaatacct cggcggctcg tcaggcaatg tggcttacgg
      181 tacggcggtg caaggtttac gttcttcaat gctggcaagg gtcggtgacg aacatatggg
      241 gcgttttcta cgtgaagagc tacaaagcgt aggcgtggac accagccatt taattaccga
      301 taaagaacgc ttaactgcac tggttattct cggcattaaa gataaagaga cttttccgct
      361 gattttctat cgtgataact gtgcggatat ggcaatcacc aaagacgatt ttagcgaagc
      421 ctatattgct tccagccgtt gcttagcaat taccggcacg cacctgtcaa accctaaaac
      481 ccgtgaagct gtgctgaccg cactcgaata tgcgggtaga aatgaggtaa aacgagcgtt
      541 agatattgat tatcgccctg tgttatgggg attaacctca ctcggtgatg gcgaaacccg
      601 ttatatagac agtgccgaag tcaccaaatc gctacaagaa gtattgcacc atttcgatct
      661 gattgtcggc acagaggaag aatttcatat cgcaggcggt tcgaccgata ctctcactgc
      721 actcaaaaat gtgcgtaaag tctctaatgc cgtattagtg tgcaaacgtg gggcattagg
      781 gtgttcagta tttgaaggcg agctgccgaa tgatttagac ggtggcttga atgtgtacgg
      841 cgtgcgtgta gaagtgctga atgtgctggg tgcaggcgat gcttttatgt cgggcttact
      901 gcgtggctac ttaaataacg aaggttggga acaagcgtgc cactatgcca atgcgtgcgg
      961 agcgttagtg gtatctcgtc acggctgttc accggcaatg ccgaccaaac gtgaacttga
     1021 cgattattta acccgtgcag agagtgtacc acgtccggat ttagatgagc gtttaaacca
     1081 cttacaccgt gtcaccaccc gcaaaaaaca gtgggaaaat ctctgtattt ttgcttttga
     1141 tcaccgcaaa cagttggtgg atatggcaaa taaagtcggt gcagatcttg ctcgcatacc
     1201 gaaactgaaa cagctgctat taaaagcgat ggaacaaacc gcaactcaat ccggcttacc
     1261 acaaaatcaa gcagggatcc tagccgatac cactttcggg caagatgtac ttaatgagat
     1321 taccggcaaa gattactgga ttgcccgccc gattgaagag ccgtcttccc gcccgctgga
     1381 attagagtat ggagatttag gctctcagct agcatcattc ccacgcgatc acgtcatcaa
     1441 atgcttggca ttttaccacc cgaatgatga aagcggttta aaagcccgcc aagatcgcaa
     1501 gttaaaagag gtgtatcaag cctgttgccg taccggtcac gagctattgt tggaaattat
     1561 tctgcctgct gatatgccac agagtgaggc tttctataac caagcgatag cacatttcta
     1621 ccaacttggc attaagccgg aatggtggaa attgccggat gtttctcgcg cacaatggca
     1681 agcgatttcc gccaccattg aggcaaacga tccggactgt cgtggtattt taattttagg
     1741 tttagatgcc ccgttagagg tgtttaaaga cacctttgaa caggcaaaag gctgtgagaa
     1801 agtgaaaggc tttgcagtcg gccgcaccat tttcggtgaa ccgtccgaaa aatggcttgc
     1861 cggtgaattg gacgacaata ccttgatttc tgcggtatcg gagaaatatc gcactttaat
     1921 cgatctctgg caacaacgtt aatcatattg ctttaagtga aaacccctta gcttatgata
     1981 ttaagcaagg ggttttgttt tgcaaaaaat ccggctaaac agaccgcttg ctagccgtaa
     2041 aaatgcccga attttcctaa aaaagcgaat atcgggcatt cctcaatctg cttatcacaa
     2101 aataagtgtg atgaagttca catttcatac ataaaccccc ccctttttat cgaaacaaat
     2161 tgttttattt ttatcaaaat ggaaaatgta tttcagttta gttctattta gattcaatag
     2221 gagtctgtgt atgagttgca acacttcacc aaaacgtttc cacgccagtt gggagtcgat
     2281 caaacagcac caagtaccag agtggtatga agatgctaag tttgggattt ttattcactg
     2341 ggggatttac tccgtacccg cctttgcccc accgacctgt cagttaggtg aaattgatat
     2401 tgatgaacag tggttctgta ataaccctta tgcagaatgg tattttaatt ccatcaatgt
     2461 caaaaaaggc ccgacctacg aacatcatat caaaacttat ggcgaatcct ttgcctataa
     2521 cgacttcctg ccactatgga aagcggaaaa atggcaacca gcagaatggg cgaaactgtt
     2581 tgccaaagct ggcgccaaat atgtggtatt aaccaccaaa catcacgatg gtttctgtct
     2641 ctatccaagt aaatataccg atttcaactg tatgcaagcc ggaccgaagc gggatttaat
     2701 gggcgagctg actgaaaatg tgcgggagca aggcttaaaa atgggcgctt actactcggg
     2761 cattatcgat tggacttatt cctctgcccc gattttcacc gaaagtcaaa acttctcaaa
     2821 cgcttgcccg acttacgaat acgctgacta cgcctataaa caagtggtag agctgatcga
     2881 ccgctataaa ccagatgtat tgtggaatga tattggctgg ccaaaagtgg gcgagcatat
     2941 gttaccacac ctatttgctc attattacaa cagcgttcaa gagggcgtag tggacgaccg
     3001 ctggaacaaa ctatggtgcg atttcacctc caaagaatac aaacacggcg tggcttcccg
     3061 tgataagaaa tgggaaatgt gccgtggtat gggcttatcg ttcggctata accaggtaga
     3121 agacgaaagc catttgattt cggtgaaaga cttgatttcc ctattggtag aaaccgtagc
     3181 cgacaacggc aatttattgc tgaatatcgg cccgaaagca gatggcacta ttccgcaaga
     3241 gcaagttgaa cgcttattag cactggggag ctggctggaa ataaatggag agggaatcta
     3301 taaatcccgt tgtagccaac accaaaccga gcaaatcggt gatgtaacct atcgttatac
     3361 caaagttggg gcggatctct atctttacat tgatggctta accgaagccc aaatcagctt
     3421 gccactgtca gtttatggtg agctacaagc actcaatacc gagctgaaat ttaccattga
     3481 aaacaccgca caaggcagag tgttacatat tcaaaactac cagccggatt ggtatgtatt
     3541 aggctttaaa attgcagatg gggagaaata ggtatgtccg tttcacaacg ttttattgac
     3601 tttatgaatg cccacgttgc tccagtagca cgtcgaatgg aaaatcaacc gcatatttcc
     3661 gctattcgag acggttttat tgtagtgtta ccattcttaa ttgtcggcag ctttattatg
     3721 attttgctaa ttccgccatt tgatgaaaat acccaaaatg ctttcgggca agcttggtgg
     3781 cgttttgcga attgggcaag cccttacggt tggaatttct tccaaatgtc gtttaatgcg
     3841 atttcattat ttacctctgc cagtatcgcc tacaaccttg ccaaagccta taaaagagag
     3901 cccctgccag cggcatttct ctcggtaatg gcatttttgt tagtggctgc accggtcaaa
     3961 gacggaatga tggatattaa attctttggc ggtattgggc tattctctgc gatttttatt
     4021 gccatttatt cggtagaaat gacccgcttg ttggagttct taaaaattaa aatccgctta
     4081 ccgaaagaag tgccgcacgc tgtagcagaa tctctgaata tcgtgattcc aattttagcg
     4141 attttactga ctctctatcc gtttgccatt tgggtggaaa gtgccacagg tcgtaatatt
     4201 ccacaactaa ttatggactt tatggcgcca ttgattgctg tgagtgactc gctaggggca
     4261 atttgcttgt tcgttattgc tacccatttg ctctggttct taggcattaa cggctcattg
     4321 gtactaatgc aactttggac accattccta ctgcaaaata tggcggcaaa cttagcagca
     4381 ttccaagctg gtgaaccgct cccctttatc atcaccaatt ccttctggga tttctatatc
     4441 gtacacgggg caagtggtgg tgtaatagcc ttggcattcc tgctggtacg cagtaaatcg
     4501 gcacacttac gctctatcgg taaaatcggc ttggttccgt ccttcttctc tatcggtgaa
     4561 ccaattgtgt atggtgtgcc aatggtggtt aatccgctgt tctttatccc gctgattttc
     4621 gcaccactag cgaatgcggt tattgcctac ctgattttag attttaacct tattcaccgt
     4681 gtttacttga tggcaccgtg gacaacaccg gcaccgattg gggcatatct ggtttctgcc
     4741 ggtgatattt gggcaccaat tttaagtatt gcactgatta ttttggatat tgtgatctac
     4801 tatccattct tcaaaatgta tgaaaaagtc tgcgtcgaga aagaaaaagc acaaaatcta
     4861 gatgaaaaag cacaacagga gttgctagaa aaagcacgaa tggcagcaca ataacactta
     4921 tttctagcgt aattgagagg ggctaatcga aagattagcc cttatttttg caaaaaattg
     4981 acaaaattta tccgcttgta aacaagaaaa gcgtataatg aaataaaaaa ttcaagcaga
     5041 gataatttga aatgaatgga cctactcaat tagcacattt tcaagaacaa atccgaaaag
     5101 agtatgacgg actaagtaaa cgtttaaaac aagtggcaca gtatgtgctg gataatggca
     5161 acagcgtggt gtttgatacg gtttctacca ttgctgaacg agctgatgtt cccccttcaa
     5221 ccttaatccg ttttgcgaat gcgtttggat ttagcggttt taatgaaatt aaacagcttt
     5281 atcgccaaga tatgatggaa ggcacatcac gttacaccga acgtgtgcaa ctttttcgtc
     5341 aaattgaacc gcttgatgag caaaacagtg agctcaatca tattttagat gtgttcgtac
     5401 agggtaatac gcaggcactg caacagttat cgacacaagt cagcgaagag cagttagcac
     5461 aaacggtaga tattttacac aatgccaaac gcatttttat tgtgggttta aaacgctcat
     5521 tcagcattgc gaactaccta aactatgcgt tgcaccattt ggactatgat gtctttatga
     5581 tcgatggttc gggcggtatg tttgacgagc aattaagccg aatccgtgaa ggtgatgcgg
     5641 tgattgccgt gagcttttcc ccgtatgcga atgaaacact caacgtggtg acagcaactg
     5701 ccagaccggg ggtaaaacat attgcgatca ctgatagcca acttagccca ctcctttcat
     5761 ttagcgatgt gtcgtttatt attaaagaag cacaggtgag tggttttcga tcccagtgtg
     5821 ccacaatgac gctcgcacaa acgattgccg tttcactggc gttgaaaaaa gcctagatta
     5881 agaaagtgaa agacctgcgt aaatacaggt ctttgtctat taaccgatta aagcgttaat
     5941 ttcatcacga tactgcccgg cttttgcacc aaaaataatt tgttgcgtat caccgacttt
     6001 aatgacatca accgccccaa gctttttcag tgccgactta tttaataaac cgttgttatg
     6061 taacaccaca cgtaaacggg ttaaacaagc ttcaacttgc ttgatattct ctttgtttcc
     6121 taaagcatta ataatttcta gaatgataga tttatcagac atatttcctc catacctatt
     6181 tatatttaaa actcttatta tgatatttta aacattttct gatggttaga acaattttta
     6241 ttagtaattt gtataaaaaa acgctaaatg tatctttctt taaaagagtc atatcaatga
     6301 atctcccttg tctttccgca aaaaatctgt ataatttgac cgcttgtttt ctcttttgaa
     6361 acaagttcgt taccctcacc tcgaacgagg gtttattttt tactatcaac atttagagga
     6421 aaggttatgg taaccattcg tttaactcgt ggcggagcta aaaaacgccc attttaccaa
     6481 atcgtggtag tggacagccg ttcacctcgt gatggtcgct ttatcgagcg tatcggtttc
     6541 ttcaacccat tagcagcagg tcaagctgag cgtttacgct tagatgtggc taaagtagat
     6601 gcttgggttg ctaaaggtgc tgatttatca gaccgtgttg cttctttagt aaaagaagct
     6661 cgcaaagcag cttaattttt aagccaaaat taaataagta ggtgagtatg agcgaacaaa
     6721 agatcgaagt tgtcggaaaa ttaggttcaa cctatggtat ccgtggttgg ttgcgtctct
     6781 attcatcgac agaacaaact gagagcattt tcgactacca gccgtggttt ttaaaaatta
     6841 aaggtcagtg gcagcaggtc gaattagaaa gctggcgtta tcatagcaat gatttgattg
     6901 ttaaattgaa aggcactgaa gaccgtgaag ccgcacagtt attaaccaac gctgaaattg
     6961 gcgtggattt gtctgtgttt cctgaattgg aagagggaga ttactattgg cacgatttga
     7021 tcggctgttc ggtagtaaac ttagagggct acacaatggg aacagttgcc gaaatgatgg
     7081 aaacaggttc aaatgatgtg cttgtggtgc gtaataacgg caaagatgct ttcggtaaac
     7141 aagaacgatt aattccgttt ttgtatgaac aagtagttaa aagagtagat ctcgccacca
     7201 aaaccattac ggtggagtgg gacgctggtt tctaacctca ggtatgcggt gagctttgga
     7261 aaacatttaa ggcgttaaaa tgtggattgg tattatttca ctgtttcctg aaatgtttaa
     7321 agcaattacc gatttcgggg tgacaggacg tgcagttaaa caaaatctac tgcaagttga
     7381 atgttggaat cctcgtgatt ttacattcga taaacataaa actgtagatg atcgccctta
     7441 tggcggtggt ccgggaatgt tgatgatggt gcaacctttg cgtgatgcga ttcacgcagc
     7501 gaaaaaggcg gcattagcag tagaaggcgg tgaagctaaa gtgatttatc tttcgccgca
     7561 aggacgtaaa ctcgatcaaa acggtgtgca aacactggct tcaaatcaga aactgatttt
     7621 aatttgtgga cgatatgaag gcgtggacga gcgattgatt caaacagaag ttgatgaaga
     7681 atggtcaatc ggtgattacg ttctcacagg gggggaatta cctgcaatga cattaattga
     7741 tgcagttgca aggtttgttc ccggggtatt aggcaaacag gcttccgcgt tagaggattc
     7801 tttcgcagag ggattattag attgcccaca ttatacccgc cctgaagtat tagacggtat
     7861 gcctgttccg gaagtgctga tgtctggaca ccatgaacaa attcgtaaat ggcggttgga
     7921 acaatcgctg gaacgaacgt ggttaagacg ccctgagcta ttggatagcc tagctctgac
     7981 tgacgaacag cgtgtgttgt tagctaaaat taaaaaacag cacaaaatca gttaattcta
     8041 ggattataga aggtttttaa aatgagtaac atcatcaaac aacttgaaca agaacagtta
     8101 aaacaagact tacctagctt ccgtccgggt gacacattag aagttaaggt atgggtagta
     8161 gaaggtagta aaaaacgttt gcaagcgttc gaaggcgtgg ttattgcaat tcgtaaccgt
     8221 ggcttgcact ctgcattcac tctacgtaaa gtttcaaatg gcgtaggcgt tgagcgtgta
     8281 ttccaaactc actcacctgt aattgacagc atttctgtta aacgtaaagg tgcggtacgt
     8341 aaagctaaac tttactactt acgtgagcgt tctggtaaat ctgcacgtat caaagagcgt
     8401 cttggcgact aattgctaca aaacagtgaa atgcacaaaa gccttgagga aactcaaggc
     8461 ttttgctttt tgtacttaca agcagttatt tttcctcaat gatttacaaa tcttgctttc
     8521 ttttttgtta taatgttaac aagataacat taatgatagg tgtcgatatg aaacaattaa
     8581 gtattagatt gccagacgat gaatttactt ttattaaaac atttgcttct gctcataaac
     8641 tgactttaca aaattttgtg atgtccgcaa tccaagctaa agttgcagaa atgtctgcta
     8701 aaaataaaat atctgaagaa agtaacattc atcaacctct ttctaaagat gaaaaaataa
     8761 tgctaaatga ggcaaaagta ttttattctg ctcgttcgca tttaaaggca gaaaatgtga
     8821 ttcttccgag tgattttatg gagcaaatta aatcaggctg tggagcagaa aaaatggcag
     8881 aaatgatggg atataccaaa gaagattggg agtcaatgaa gtaatatggg gcagattaca
     8941 tttagtaata ttttcacaaa agtgattttt gagaatgtgc tttctgcttc aactaaagag
     9001 aaaataaaac aaatgctttt tcagtctgtg gttgcattac ctcctctcca ttcagaaaga
     9061 aaaatgattt tacagttgaa aaagcaaaaa attaccattt tttatcaagt tattgaggaa
     9121 caatctgtgc aaatcctcgc ttatcaattt ggtggaactg ataaattgac aggtgtgtct
     9181 aaagctcact ttaaaacact agatgccatt tttcaaatga cggatgaaga gaaagaagga
     9241 aaattctaat gtaagcggtt atttttccat atttttttgc aaataacgtt tctcaaattt
     9301 tgcttgatgg cgttcaagca cttccgtcat cgaaatgcca tatttatcgg ctaatacaaa
     9361 aagattatcc atcacatcgc ctaactcttc gattaagtta tctcgttttt gctgttgtga
     9421 agcttcggtt tcgtccggtc gttcacgccc gatttcaatc gctcttactg cacaagccac
     9481 ttcgccgatt tcttctgcta gataagtcac ccgcataaaa gggcttcgtt cataccaacc
     9541 ttgttgttgg taaaactggc gaacccattg ttgatattgt tcaatttgca ttttatttct
     9601 gattcaaaaa gtagggacga aaaatttttc gcccttttat aagaaaatgt atcagggcaa
     9661 atgatgattt gcccctagga gtgttactct gcctcagaga gaataatcca gccactatcc
     9721 agccagtcgc aaatggtgtc tagcattagc tccagctccg cttggtcttg cactttggag
     9781 gcaagtttgt tccacgaaat cgaatctcca ttggcgatac gaatcagtaa tgccatttct
     9841 gcttcgttta actcatcaat ccactcgcca tttacataaa cccgttgagg gttctcggtg
     9901 tagaggattt ttacatttgc atcttgctgt aaccagccgc cggcttcgag aatttcttgc
     9961 acttcgtcag ggtaatattc attgtcagtt tgcaataatt cataacggcg ggagcttgcc
    10021 gcagtggcaa cactgtgagt gagtaactca tcgaactgtt cggaattttg gagcaagtcg
    10081 attaactgat gtttaaacat tttcaccatt ttcggatcaa gcaacgcatt cggctgttca
    10141 ttcggcgtta agcggaacgg aagatgaaat tccgatgaat taatgttgtc ggcttgttgt
    10201 tcgatggttt tgcagagatt ttccagtaaa tcggtcgcat ttggataacg taaaccaaaa
    10261 gagaaagtta aaccttgctc gctttcggaa acaccatagt gagccattcg agacggcaca
    10321 taaagcacat cacccgggtt cattacctcg tccattacca gttcgcccat atcatcaaaa
    10381 atgcggatcg gttggtttgg tttgaattcg gtgcttggat cgcaccattt gcctaattgc
    10441 caacgacgtt gcccatagcc ttgcaccaag aacacatcgt actcatcata atgtttgccg
    10501 acagtgccgt tgagcggtga gcaagaaacc ataatgtcat cacgttgcca ttgcgggata
    10561 aaaccaaaag cctgccaaag ctcgcctagc tcaggagacc attgctcgag gttttgcacc
    10621 attacagacc attgtacagg taactcttcc aaatcttcct caacaagcgg gctggattta
    10681 acagaccatt tctcgttttc gcattgaatc aggcgtgcag tgacttcttc ctctaatgcc
    10741 agttctaaaa tatcttccgg ctcaaacaat ccgacaattt ggggtaagcc gttacgaatt
    10801 aatagcggtc gtttttgcca atattctcgc aaaaaggttt cagggctgat attttcaggt
    10861 aagcagaatg gaatgttcat aatggctcct tgctacgtgc ttctttgaga ttactgatat
    10921 tctacccgag aaatcaggaa aaacgggaaa ttttttatga tttagcgaca tcattcacat
    10981 tttgaagagg aaataatgaa aaaggcgaac attgttcgcc tttgaaattt attttaaacc
    11041 gagttttttc tcgagatagt ggatattggt gccacctttg cggaattctt tatccgcaag
    11101 aatttgagta tgtaaaggaa tattggtttt aatgccttcc acaatggttt cggaaagggc
    11161 attttccatc cggcgaatcg caatatcacg attttcagca aaggtaatca atttaccaat
    11221 cattgaatcg taatgtggcg gcacgctata gcctgagtaa atatgtgaat cccaacgcac
    11281 acctaaacca cccggaacgt gtaaacgggt aattttaccc ggcgatggca agaaggtgtt
    11341 tggatcttct gcgttgatac ggcactcaat ggcgtgacct ttcactttaa tatcatcttg
    11401 tgtgatcgaa agtggtaagc cggctgccac acgcagttgc tcttttacca agtccacacc
    11461 ggtaatcatt tcggttacag ggtgttctac ctgtaagcgg gtgttcattt caatgaagta
    11521 aaactcgccg ttttcatata agaactcaaa agtacctgca ccacggtagc caatttcacg
    11581 gcaggcattg gcacaacgct ccccaataaa ttgacgcaat tcaggtgtaa taccctgagc
    11641 aggtgcttct tccaccactt tttggtggcg acgttgcatt gaacagtcac gctctgctaa
    11701 ataaaccgca ttaccgtgag tatcggcaag tacttggatt tcaatatggc gtggattttc
    11761 taaatatttc tccatataca ccatatcgtt attaaatgcc gctttcgctt cggctttcgt
    11821 cattgcgata gattcttcca aatctttctc gtgatgaacc acacgcatac cacgaccgcc
    11881 accaccacct gatgctttga tgatcaccgg gtagccgata cgtttagcga tttctttatt
    11941 tttcttcgga tcgttaccaa ccggaccgtc agaacccggt acgcaaggca cgccggcttt
    12001 tttcattgca ttgatagcag agactttatc gcccattaag cgaatcacat cagccgttgg
    12061 accaataaag ataaagcctg atttctcaac ttgttcggca aagtttgcgt tttcagataa
    12121 gaaaccgtag cccggatgaa tagcatcggc attcgttact tcggcagcgg caataatcat
    12181 cgggatattt aaatagcttt ttaccgatgg agcaggaccg atacaaatgg tttcatcggc
    12241 taatttaacg tgttttaatt cacggtcggc agttgaatgc actgcaaccg ttttaatgcc
    12301 caattcttta caagcacgca aaatacgcag ggcaatttca ccacggtttg cgataacaac
    12361 tttttctaac atagggaaat tccttgtgtt ctagaaaatg tagggcgtgt tgcacacgcc
    12421 cgttggataa tttaaggaag agcttattca atgatgaata atttttggtc gaattctacc
    12481 ggttcgccat cattaactaa gatttctttt accacaccgg ctttgtctga ctcgatacgg
    12541 ttcatcattt tcattgcttc tacaatacat aacgtatcac cgattttcac ggtttgaccc
    12601 acttcaacga acggttttgc atctgggctt gggctacggt agaaagtccc caccattggt
    12661 gaaagcactg cgtggccact cgtttctgcg gcttttggtg cttcagccgg agctgcaaca
    12721 ggtactgtcg aagctacttg aggtgccgct ggtgcaacaa caggagctgc tgcatattga
    12781 actgcagctg gtgcaacagc tggagcagca cggctaatac gcaccgtacc ttcttcttca
    12841 gacacttcta actcggtaat gccagattct tcaactaatt caataagttt tttgattttg
    12901 cgaatatcca taataagatt ccgtatgtga ttaaataaaa taaaaaagag aactccacat
    12961 ttggggtata aattcaaatg tagagttaaa aaatgctggg cgtagaatac ctgaatttcg
    13021 ctaattttgc gaataaaatc tgataatttt ggcgaaaatg gacgatttta gcattcatcg
    13081 taccagttag gatttttgga aaatggtgac tcacaagcga ttgaaaattg ccaatttttt
    13141 gtaaaaaaca accgcttgtc agattatttc aataaatctt catttttctt gtaattccac
    13201 ttgctaccgg gcttgtcgat atactgaaaa tattcgttgg taaaagtacc ttgagcacaa
    13261 gttactttgt ctcggcggaa atttacttct ttatcaccaa tggcattatt tagggtgtca
    13321 ggaccggtca taacaaacac gccaccttca atccgacgat tctcaatatt gctgataatc
    13381 agctcaaggg tgtcttttag aatccaattt ccagcttccg aagccaagaa aaagttggtg
    13441 tatttatcac ggcgtttaat taacacttcg ctatcatttt cgccaataat tttagagagt
    13501 gggtaaacca aatgcccgtc aatatcaata taaatgccac cttctcggag caaagtaaaa
    13561 attcgccaaa aatcagcttg tgccgcacca tcggttaatt tgctataggc gttaaaggtg
    13621 cgttcatcgg cgttggcctt gatgtatgcc tctcgttctt ctgtgctaac gtagcgataa
    13681 tcgtagctca atgacattag gcggttaaac agataattcg catacattgg caaggtgact
    13741 ttgttagaat aattcgtttg ccaaatggtt ttggtaattt tgctcggaat gcttgattgg
    13801 atttttgccg ggctatattc cggaatggtg aaacgttttt tcggaaaaag tgcatggaac
    13861 ggataactca atattttgac gatattaccg aataaacgga agactccgtt acagatcaca
    13921 ataaattgtt catttttaac agccatttta ttaccttatg cttttaagtg tgaaattgca
    13981 aaatccaacg catattcata gccttttgcc cctaaaccgc aaataacgcc ttttgcaata
    14041 tcacttagat aggagtgatg gcgaaaaggt tcacggctat gaacgttaga caaatgcacc
    14101 tcaacaaacg gaatcgacac actcaataac gcatcacgaa ttgccacgct ggtgtgagta
    14161 aatgccccgg ggttaataat aataaaatcg gtatgctgaa aggcttggtg aatacggttg
    14221 ataatcggct cttcaccgtt ggcttgaaag ctctccagct caacatcttg ggccgcagcc
    14281 aattttttta agtggttttc aatatccgcc aaagtttgcg aaccgtaaat ttgtggctca
    14341 cgtttgccca acatatttaa attcgggccg ttaaggagaa ggattttttt catatttact
    14401 tattcaactt gtaattcata attaagccat tcacggtttt ctttcgcccc caagcgttga
    14461 taaaaacgaa taccaccgtc attccaagga ttttattgtc ttacaatgat gtgccttcgc
    14521 ctcatttttc aaggcttgca ttaacgcctc tcccactttc tgattccgag cagtttcatc
    14581 aacataaagc tctttcatat aaatagcggg gcggttttgg gcagtgtaag gaagaaaata
    14641 ataaaccaat atgccgataa tgttagacgc attttcagcc actaaacagt aaaaatcggg
    14701 tgggcttttg cgaaagccgg attccattac aacttcagga gtaatcgcaa aagaatcgat
    14761 atagtgctca aacacagcca gtttttgcat cagagggaac acttggtggg tatcttgttc
    14821 gaccattttg cggattgtaa atgccataaa attccttaca agcggtaaaa aaatccctca
    14881 cttttgcaaa gcgagggagg ttttaattat tcgtcaatag aacgtaataa gtcgtttaag
    14941 cccactttgc ttaaggtttt ctcatccact tttttcacaa tcaccgcaca gtagaggttg
    15001 tgtgaaccat cttttgatgg aagcgagcct gaaaccacaa cagagcctgc cggcacacgg
    15061 ccgtaatgta cttcgccggt ttcacggtcg taaattttgg tagattgacc gataaacacg
    15121 cccattgaga tcacgcagtt atcttcgaca atcacgcctt ctacgatttc agaacgtgca
    15181 ccgataaagc agttgtcgcc gatgatggtt gggttcgctt gtaatggctc taacacacca
    15241 ccgatgccca cgccaccaga aaggtgaaca tttttaccga tttgcgcaca agaacccact
    15301 gttacccaag tgtccaccat tgtgccttcg ccaacgtatg caccgatgtt cacgaaagat
    15361 ggcattaaca ccacgttttt ctcgatatgt gaacctttac gcaccaccgc acccggcacg
    15421 gcacgaatgc catctgcttt gaattgctct tcggtgtagt tgccgtattt ggttggcact
    15481 ttgtcgtaga atttggtttc tgcaccgtcg atgatttcat tgtcggcaat acggaatgaa
    15541 agtaataccg cttttttcac ccattggttt actacccact cgccatcttt tttctcggca
    15601 acacgcagtg aaccgttgtc taatcctgcg atcacctctt ctactgctgc tttggtttca
    15661 gcatcaacgg ttttcggagt aatttccgca cggcgttcaa atgccgcttc aataatagct
    15721 tgtaaagaca ttgttgtgtt ccttcaatat ataaattaaa acagaaaatt cggctcactt
    15781 tttaacatag aaaggcgttt atttccacaa gaaaaaacat atcgcagaaa tttagtttat
    15841 aattccaagc cacttatttg atacaagcgg tgatttttgt ggaaaatttt gcaaatctgc
    15901 ttaccggtaa aacgcgtgag catttagtgc cgttgccgaa cgctctttcg gataaacatt
    15961 accttcagcc tcaggtggtt gaggcttttt tgacgttgca gcatgctgca aaacaagccg
    16021 gctttaattt acagcctgcc agtacttttc gtgattttga acgccaaaaa gggatttgga
    16081 atgcgaagtt taggggtgag cgtaaggttc acgatgataa cggggttgcg attgatatgg
    16141 cggcgttatc ggatcttgaa aagtgcaaag caatgttgag atggtctgcg gtgccggggg
    16201 caagtcggca tcattgggga acggaaattg atatttttga ccctgattta ttgccggaaa
    16261 atacgccttt attgcttgag ccgtgggaat atttggaagg tggctatttt gccgatttaa
    16321 ccaagtggtt acacgttaat gcggaaacat ttggctttta tttcccgttt gacggtaaac
    16381 attctcgagt gggctttgag ccgtggcaca ttagctatcg cccgatttca aatgaatatg
    16441 agcaacgctt taacgatgaa atcttaaaag ctgcgtggca agatgaagaa gtggcgggta
    16501 aggaatgctt acttgaacat tttgaagaat tactaaaatg atccaattaa ttaacgaaac
    16561 ccaacaacac gacaaattcc gccaaatttg cgacaaatgg cagctggttg aagataaatc
    16621 cagcccgtta gccttagtgc taacggagga acgattggaa ctacgcaaat tagacgaacc
    16681 caagctcggg gcgattgcag tgaattttgt ggacggtacg atggcacatc ggcgtaaatt
    16741 cggtggtggg cgaggtgaag ccgttgcgaa agcggtcggc attaaagggg attatttgcc
    16801 aactgtgatt gatgcgacag ccggtttagg gcgagatgct tttgtattag cagcggttgg
    16861 ttgtaaagtg ctgttagtgg aacgcaatcc aattgtcgct gccttgttgg aagatggttt
    16921 aaaccgagct tatcaagatg tggaaatcgg cagttttatg caagaaagaa tgatcttagc
    16981 cgatgttcga gacatttctc agctagatcc acaatcccaa atggctgagg tagtgtattt
    17041 agatccgatg tatccgcaca aacaaaaaag tgcgttggtg aaaaaagaaa tgcgggtgtt
    17101 tcaacattta gttggggcag atttagattc ggacagcttt ttcttaccgg caaaaggatt
    17161 ggcaaaaaaa cgtgtggtag tgaagcgtcc ggactatgcc ccgtttttag cggagcaaaa
    17221 gcctgatttt tcacacacca ccaaaaatca ccgttttgat gtttatcttt ctcacctgaa
    17281 aaatgattaa aggtgggtca tgcgataggc aagcggttat ttttacagta aaatttacaa
    17341 attatgttat cgtttattta tatttaaaaa ggcggttatc gtgccacaac gtgattatgt
    17401 cgctcgttcc aacgagaaaa aaagtaaaaa aaatcaaaaa gaaagtaatg ttaaaaagat
    17461 tttaatgcgg attatcgggg taattttatt cttcggtatt ggtttatggt ttttgaaatc
    17521 cagtgcacct gtaccaacag ttccgtcagc accgcagcct gctaattcac agactaaaag
    17581 cgaattacca agtcgaccgg aagagacgtg gagctatatt cgtgatttag aaacccgtac
    17641 ggtaattacc gataatagcc aaacttcaca agaacgtttg gcacaattaa cggcggaaca
    17701 aaagcagcaa attgaagaaa gacgcaaaca agaagaagca cgcttagccg ctgagcaagc
    17761 tcaacaaaag cctgcgaccg atgtatctgc tacagaattg gctccgaaaa cagaggaagt
    17821 taagtcgtta acggaagaag aattagcagc aaaaaaagca caggagcaag ctttagcaca
    17881 aaagcaagcg gaagagaaac gcagacaagc agagcttaaa aaacagcagg aagcgaaaaa
    17941 agagcagccg gctaaaattg tagcaagtgc tgcaacactg gcagataaag ctgcaaatca
    18001 ggcgggtaaa tttgggttac agtgcggtgc atttaaaaat aaagcccaag ccgaaaatat
    18061 gcaagcaaga ttggcaatgg caggttttaa cgcccgtatc gcaagcagtg ccgattggaa
    18121 ccgtgttttt gtcggcccga taggtgacag agcggcaact tccagagctc aatccaatgc
    18181 acgcagtgta gcggaatgtg tgattgtggc gatgtaaaat tgattgaaat attgaagaga
    18241 gctataggct ctcttttttt atatcccaat cgcatatttc aaggcttgct ttttgatggg
    18301 tgacacttta tcagccaata ctaaaccgac attgcgggca attttgagcg gtaataaatc
    18361 ggtcttaaac gctttataaa acacgtccat gcctgtttgc atcagtaaat tatccggttt
    18421 acgtttttgc tcatagcgtt gaagcacctg ctcacttgca aaatttttgc cttttttgac
    18481 cgcttgttcg atcacctcaa gcaaggtttt aacatcttta aagcctaaat ttacaccttg
    18541 tccggcaagc ggattaatgg tgtgagccgc atcgccgact aataccaccc cgttttgcac
    18601 atagtgctga gcgtgctggc gggttagcgg gaaagcccct gaagcctgca cctgaatgtt
    18661 gcctaattct gcgttgagcc ggcttgggaa atgttgctca atcgcaactc ccagcttttc
    18721 tgctggaagc attttcagtt cggcaatttt ttgtggtgaa tcgtaccaaa caacgcagcc
    18781 gtgattgccg gaaagcggta aaaaggctcg agggccggtt ggatagaatt gttgccaagt
    18841 gccgcttgga gcaggttttt cggtggtaac ggtggcgagt aaacagtgtt ggcgatattg
    18901 ccaagcggtt aaaccaatgc ccgcccattg gcgaacctgt gaatttgcac cgtctgcggc
    18961 aatcagcagt ggggcagcaa aggtgttgcc atcaaccgtc acttcccaat actcgcccgc
    19021 tttatttgca aaaatttgct caaatccgac cgcttgtagg cagtttggat attgctttaa
    19081 ttgctcccat aacgcaattt gaataacgtt gttttcgacc atatcgccga gcttttccaa
    19141 acccaaatca gctgccgaaa aaagagtgtt gaatccatca atttcccagg tttcgagctg
    19201 ggtataaggg gtgcttctca ttgcaacaat ttgctcccac acgcccaatt tttctaacag
    19261 ttgaatcgag cccatactaa tggcggaaat tcgcaaatcg tagtctgaat caggattaaa
    19321 ggtcggcaga gggtttttct ccaacaaggc taaacgcagc ccctgttttg ctaagcctag
    19381 agctgttgct gccccaatca taccgccacc gattacaatc atatctaatt cagttttcat
    19441 tttttcttcc tttttagtta ggcaaaatac tgctaaaacg ccttgaattg tagtgcattt
    19501 cagattagga tcaaaccgat ttatctattt atctaaggag cgttttatgt cttgcaaaac
    19561 tcatgcaaac cacgagcacg aacacggcga aggctgtggt catactgcta ttaaacataa
    19621 cgaccatatc gactatttac acgatgggca tttacaccac aacaaacacg gcgatcacta
    19681 tgacgaacac gttttagaag tgaatgaaac caacccggca gactgtaatg ccgcccattg
    19741 ctgcggcgac cacgttcatg gtgaggtttg cggacacgaa gctgtgccgc acggcgatca
    19801 tatcgactac atcgtgaatg ggcgtttgca ccaccaacac ggcgaccact gcgatgacca
    19861 cgggccggtt gaaattgtga aataagattt ttgatgggag gttttagcct cccattatta
    19921 tttttgcgat ctcgctcgaa aaattgaaca ttcctgctac ccctcttccg attttccttt
    19981 tatgctctcg gtattgattt ctaataccga aatgtgatga ccttagcgat tgtttacagc
    20041 cgagcctcca ttggcgttga agccccgttg gtgacgattg aagtgcatat tagcaacgga
    20101 caaccaaaat taaccattgt cggcttgccc gaagccacag tgaaagaggc tggtgatcgt
    20161 gtgcggagtg cgttgctgaa cgctaatttt atctatccgc cacaacggat cacgattaat
    20221 cttgctccgg cagatttacc caaagaaggc ggacgttttg acttgccgat tgcgattggc
    20281 attctggcag cctcagggca aattgattct gatttattaa cgcagttcga gtttttgggc
    20341 gagttggcac tgacagggca tttgcgagga gtgcacggca cgattccggc agtgatttct
    20401 gccgataaag ccaaacggca gatgatctta gccaagcaaa atgcgaatga ggcatcgctt
    20461 gtttccaatg ccaccaccta ctttgccggc tcgttgttgg aggtggtaaa tatgctcaac
    20521 aaacgggata aactgccgat ttgtcagcac atttcgcaac attctgccga aattcgaccg
    20581 cttgtcagcc gagatcttac tgatattatc gggcaacaac acgccaagcg agccttaatg
    20641 attgccgctg ccgggcaaca taatttgctg tttctcggac caccgggaac gggtaaaaca
    20701 atgttggcaa gccggctggc ggatttactg ccggaaatga ccgatgagga ggcgattgaa
    20761 accgcctcgg tgaccagcct tgtgcaaaat gagctgaatt ttcagaactg gaaacaacgc
    20821 ccgtttcgtt cgccccatca cagtgcatca atggtggcat tagtgggagg tggctgtgaa
    20881 aactagaaat aaatgtcaaa aacaagaaat aaatgtcaca aatctttctc taatttcgct
    20941 ataattcgat catcaaaact ttaaggggaa atccgttatg ttctacctca ataacgacaa
    21001 tttcaaacga gaaccttatc gtggatattg tccgagtcac cttgaaaagc tttttactaa
    21061 accacacctt gatattagag gtaacggtta ttattaccct gacaatgaat atgttgtagc
    21121 ttggtatgaa tcggacttca ttttcaaatc aagaaaagct caagcacatg caaaagtaaa
    21181 gcttgttaat ttaacttgcc ccaaatacac tggcaaaaac agtgctgaat atttaagcgt
    21241 tttgtatatc tccgttcccc ttaattatct acattatttc actatcggca gtatctggaa
    21301 aggcggtgtc gccaaagagc agtttgctct cgaagaattt tacattacgg ttgaagctga
    21361 aaatcaagat ggtaaacgag aaaacctctc aatcgtttca ttcggtgaga gtgaggaaaa
    21421 cggtttagag aaaccatttg attacacaat ctacactatc cccacagaat atcacaacta
    21481 cggtgatgac ctaaaccgac tactttccat ctcttaccaa aatcaaaaat tcattatcca
    21541 tccgctacat atttttatga tgcactacgg gtactctacg gacatcaagc gtatcttggc
    21601 aacataccca cttgacgagg taagagaacg cctatttata gataaggtcg ttgagaattt
    21661 tgatgtagag cgttatgtcg ttttaccgaa atactttgta aaaaaagatg cgattttcct
    21721 ctatcacttc aaatatgacg aagagactac gggaacaagg gtaaaaaagc ttgtaagcca
    21781 gtttaggtta aatattcaca atcaaacaca tccaatagaa atagattttt ggcacacgca
    21841 aaaggttgaa ttgaaaatcc gtggtgttcg acttggaaat gctgtgttat gcgcagaaat
    21901 tatcggtctt aatcagcccg aaggcgaaga tattacgcta gtgctatctc aatcgaaaag
    21961 agaaaaatcg ggtaataaaa ccgaggaaca aaataacgag gtaaataacg ttcctattac
    22021 cagagtttat acacgagaac ctgaattgga tgagttacca ctcaccgata actccccaga
    22081 taatcgaaca gtcgaataca acaagcgaca atttgaactc ttgggccgtc aacgccaaat
    22141 cagagcgctc aagaaagcac gcgaagagag taatcagaaa atgaaagcct tgactccaga
    22201 tgagatagac tcactgggtg taggtgaatc agatggccga aacggtaagg ttggactcgc
    22261 tttctgtttc cttgatgata cacctgttgg caaaagctcc aaactataca aattatggca
    22321 gcacgcgaag gctgttgcgg aatggaatca cggtgaggcg cactggtaca cgcctaatct
    22381 cggttttaga aatgacgatg aactccttcc cgtttcctta gaaaccaaca aatgtttcga
    22441 ctaccctgaa atcgcgataa ttatccgcct ccaaatatac ggagaaacat ttttcctgat
    22501 tgatttctca atgaagcaaa gagatataag cattcgtggc ttagggtata aacccgatcc
    22561 aaacgaagat tttctctatg aaagtgatat gagcaaaagc gaattatccg aattattgtc
    22621 cgcagttcat catcatgaac atctgccaaa agagtacata gagaaaaaga acaaagaaaa
    22681 aaccaaactc actacattta accatagcga agccgaaagt agtaactggg cttataacgc
    22741 ggtgcaaaaa ttaacttcaa gggcaattac taagccgaca tatttttaat tatttttatg
    22801 aatgcagaac aacgtgtaat tgttactccg acattttggg gtaaattttt tggaaaaatt
    22861 aaaagtgttg aacttcaaca aaacaaagtt atcgtaactg acaaaaagaa taatataact
    22921 gaacatgatt taggaaaaac ttttgacttt ccagctatcc agaagtcttt ctttggtact
    22981 aaattatttt ttaaagacga tagcacagaa gttgttttat caaaacttgc gaaaaaacaa
    23041 actgatagtc tattacttga aatcgaaaaa gtagttgcat ctaatattaa agtgaaagta
    23101 aaagagggtt ttcaacactt tgcaaattta gccgaaaatc aatatctcag agattccgac
    23161 attcctacat taaatgatcg tgtaagattg tcagtgcttt cctatgggga taacaaagaa
    23221 cattttcaaa aatactttga tgaaagtttg gttaagaaaa ttcaatatat ctcttcactt
    23281 tttcctgtaa atgccataaa tgctcaaaca attcgaagag aatacgagca acatgtttta
    23341 aatcatcgca agcatttctt tgatgtcatt gaatctaatc cgcttactga gcaacaaaga
    23401 ttgtcagtca ttcggaacaa cgacatcaat atggttcttg ctgccgcggg gacaggaaaa
    23461 acgtctgtaa tggtcgcaaa agcattggac ttaattgatt ctggtgcttg taaaagcgaa
    23521 gatattttga ttcttgcata caaccgcgat gcagcaaccg aactatccga acgcttacaa
    23581 gaacgtgcac gagaagccaa tttagatctg gaaaatagcc ctagcatctc gactttccat
    23641 gcgcttggcc gaagaattat taaagaatgt ggaaaatcag tccacttgtc aaaatttgcc
    23701 gaagatccga tgaaattaga tagatggttc aacaaatggc tagaggacta catcaaagaa
    23761 gatcctgata atcttgcaaa attcattcaa cttgcatacc aacctatcga tccattccaa
    23821 ttcaaaacga aagacgaata cgatagatat gtaaatgaca atgactatcg aaccttacaa
    23881 ggcgaacgcg ttcgtggtta tcaagagtta ttgatcgcga actggctttt tagccacagc
    23941 gtagaatatg agtatgaacc aaggtatgta tcaaaacgcc gtatcgagat tggttttgac
    24001 tacaaacccg atttctcttt gggtgatggt gtttaccttg aacatttcgg cattgaccga
    24061 caaggtagaa ctcgcgcaga tattaacgcg caggaatata atgccaatat ccaaagaaaa
    24121 cgtgagttac acgccgaaca taatacaaca ttactggaga cataccacta caactgggtg
    24181 gaaaatacgt tatataaacg actagagcaa ttgatgaatg aacagttcat tcctctgaag
    24241 ccaaaatcac aacaagagat tttagatgca ctcaatgaat caggaatctt caaagaaaac
    24301 aaaaatcgct atttgaagtg ccttcaagct attcgtacag agcgattaga ctatcaacaa
    24361 atcttaaaac gtctaaccga tgcgaaaatt gtctatgcta aagaatatgc gacattgctc
    24421 atgcgtattc atgatgccta cgttaaagaa ctacgtagcg caaatgaaat cgactttgac
    24481 gatatgattt tgttggctac tcaactggtg aaaacaggtg agtttaaacc taaatggaaa
    24541 catattttag tcgatgaatt tcaagatatt tctatggctc gattggagtt attgaaagaa
    24601 atttatacta aagggcctcg accgatttgg actgttgttg gagatgactg gcaatcaatc
    24661 tatcgtttct ctggcggtaa actagaagtt actacgcgat ttaatgatat ggtcggctca
    24721 cacacgctaa gtaaactaga aaaaacctac cgctataaca atagtattgc tgacacagca
    24781 ggtcaattca ttatgcaaaa tcctgagcag tatcagaaaa atgttgtaac gcatacaaag
    24841 gtcgctgatt cttgtgttca tttgtatgac tctcatgtcg taaaggatga aaaatcagaa
    24901 gccaatatca gtttaaaagc ctcagcaata ttaaaactga tacgtcaaaa agcacctgaa
    24961 gccactgtcg caattttggc tagataccgt taccttttag aagatgcaaa aagtgtaatc
    25021 aaagataaga atgttaaatt ttggacgttc cacggctcaa aagggttgga agcagattac
    25081 tgcattttac ttggtttctt ccaaggaaaa gtcggatttc ccaaccaaaa taaagaagaa
    25141 gccgttgtag aagcattgct tcctatgcta gacagttttc cacactcaga agaacgtagg
    25201 ttattttatg tggcattaac gcgtgcgaaa aaagaaagtt atttgatcgc agatgcgaac
    25261 gcgccatcag aatttatcaa tgaattatta tcaccgaaat acaagataga tattgtgtca
    25321 aaacgattcc aagaacgtta tcggacaatc tttaaatgta atgaatgtag cactggctat
    25381 ttcgtgatga aacaaggtaa atttggtcag ttctattctt gtacatcagg ggaagtatgc
    25441 cgctcttcgc cacggatttg tgaaaaatgt ggccgtccta tgaagctgcg agaaggtaaa
    25501 tttggtcagt tttggggatg ctcaggatat ggaatcaaag gcgatcaatg tacgaatact
    25561 cgtaagtatt ttatgtaata tattattttg gaggattttg tggatttatt tgaatcaaaa
    25621 aaacaattaa tagagttaat taaaaagtac gatagtgata aagaaattta ttcttcatcc
    25681 tcatacaatg agtctcagtt aagaactgac tttttagacc ctttctttgg tttacttgga
    25741 tgggatataa ctaactcaaa gaataaactc acatctgaaa gagaagtgat tgttgaagaa
    25801 ccactaaaag aaaaagtttc agaaaatgta aaaaaaccag attatacatt tagattcaat
    25861 tctcaaagaa agttttttgt tgaagctaaa aagccaagtg tcaaaatcaa gactgaccct
    25921 ttacctgctc atcaggtaag acgatatggc ttcacagcaa aattaagtat ttctgtttta
    25981 tctaattttg aatatcttgc tatatatgat tgttcagaaa tagttgatgt acaacaagat
    26041 gctctatacg caagggtacg attatatcac tatacagaat atgtgaaatt ttttgatgaa
    26101 attatgaatc tcttaggtag agaaagtgtt tattcaggtc attttgataa tgaatggcgt
    26161 gaaatctctc aaaaaataga aaactctaag caaacagtgg atgaactatt ttttgaacaa
    26221 attaataagt ggcggcatgt tctgggtagt gaattactta aaattaaccc ttgtatttca
    26281 aacaatgaat taaatgatgc agttcaagac tatattaata gcataatctt tttaagagta
    26341 tgtgaagatc gaagtattga atgttatgaa tctttgctgg atgtcacaaa gttagaaaaa
    26401 cataaaaaat ttaaaacaaa cttagaaaaa gctgacaaga aatataactc tggattattt
    26461 aaattacaat atatagatca gctaattaac tcgacaagtt caaatttatg gtctatttta
    26521 aaagagttat attaccctta taattcatat tcattttcag tattaccatc agatttgctt
    26581 ggtaggatat atgaacaatt tttaggtgat gagctggttg taaacaacaa cgaattaata
    26641 ctccaaccaa aagattataa tttaaataga gatattatta gcacacctaa ttttattatt
    26701 cgaagaataa ttgattatac agttaatgaa tattgtaagg gtaaaaatga ttctaatatt
    26761 tatcagagta aatttgcaga tatagcttgt ggatcaggcg cattcttact agaagtgtat
    26821 caaagattac aggatatatt agttgactac tacatccaaa atgataaaaa taaactagaa
    26881 gaaactggtg taaatcaata caagttacgt tttgaagata aaaagaactt attattaaat
    26941 tgcgtttggg gggtagataa agatttcaat gcagtaaaag cctgtagatt tgggttgctt
    27001 ctaaaattac tagaaaatga aagcgatgta acaatcgcta ataagattag tattctgcct
    27061 aacttagatc aaaatatact ctggggaaat agtttaatag atttaagtga taaattaaca
    27121 gaaaaagaaa aacttaaagt aaatccaatt aacctacaag aatataaatt taatgttatt
    27181 attggtaatc ctccata
//
LOCUS       DANLRW010000024        26424 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.024, whole genome shotgun sequence.
ACCESSION   DANLRW010000024 DANLRW010000000
VERSION     DANLRW010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 26424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26424
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.024"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..416
                     /locus_tag="PXA71_000827"
     CDS             <1..416
                     /locus_tag="PXA71_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104959.1"
                     /translation="KEKTNLWNNIEQLHFALVQAELKYSGSNIPSEYSKFNLENVLID
                     FPNKTNSVAYQNLVIHNAKTRAGKLKTQYANAHDLGNLVLVEDIQKIFSGLLEIIYQV
                     RCHLVHGSLSPTPENHEVVKYCYLILWDCLKGFCD"
     gene            complement(684..1421)
                     /locus_tag="PXA71_000828"
     CDS             complement(684..1421)
                     /locus_tag="PXA71_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5104960.1"
                     /translation="MIKIENLTLAHGIQHLSCYLPKGKLIGIMGANGAGKSSLLKAIA
                     GILRPTSGEIWLENCKLHALSAVERSRQFAYLAQQLNVAWQLSVYDVIALGLPAPLPP
                     EQERQKVRSVAEQLAISHLLDNTYQQLSGGEQTRVQLARCLMKQAPILLADEPIAALD
                     PYYQIDIMQQLKALTPTQTCVVVIHHLPLAYRFCDEIILLKNGNLLVSGNTQAVLNAE
                     NIATAFGVKAEMDWEKREMWGIEKLEV"
     gene            complement(1418..2386)
                     /locus_tag="PXA71_000829"
     CDS             complement(1418..2386)
                     /locus_tag="PXA71_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5104961.1"
                     /translation="MKKLNIVLGSLLLLIVSNAAFYQLSDFALLKNAEGVLSDLRWLV
                     LGEIRLPRIGLAVLTGASLALAGNAMQGVFKNPLASPGLLGSSSGATAVSVFLLYYFS
                     APMGWLLFGGVAGALGAFLLVWLISFRHGTTMMILSGVAVNVLLGAAVTLLLSNAESP
                     WALAELYRWLQGSLVWATAEAVCWALPLILLGIVCLYRERRYLDLLTFGEETAATMGI
                     NLQRSFFTVSIGVALLVGATIPQTGTIGFIGLIAPHLARIWLKKPPSQLYLTSALIGA
                     LLLLIADLAVQYVPFFARIYIGTLTAILGVPFLIWILFTQQWRLAQ"
     gene            2567..2902
                     /locus_tag="PXA71_000830"
     CDS             2567..2902
                     /locus_tag="PXA71_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5104962.1"
                     /translation="MYHIERTEIFDQWLENLKDPLAVVTIARRIERAESGNFGDTKYI
                     AEGISEMRLNVSKGYRLYYAQKGSIIYILLNGGHKGTQQADIDKAKMLWAEIKQHMAE
                     QEKKNERII"
     gene            2886..3209
                     /locus_tag="PXA71_000831"
     CDS             2886..3209
                     /locus_tag="PXA71_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5104963.1"
                     /translation="MNELYDAPIPQATREKFGIQPFDAAEYLANDELIALYLAETLKD
                     GTDEEFIQALNTVARAKGMNELAKKAGIGRESLYQSLSSSKPRFETIRKIISALNLEL
                     SVVKA"
     gene            complement(3199..5085)
                     /locus_tag="PXA71_000832"
     CDS             complement(3199..5085)
                     /locus_tag="PXA71_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5104964.1"
                     /translation="MTQLDSVTVYSAYATPINQDKTASSVTVLTEKDFAARNATYVSD
                     VLKTVPGVAIGQQGGRGTLTSLFLRGAESRHTAVVIDGVKVNPINIGNFDFGGLPISN
                     IERIEVLRGEQSALWGSSAMGGVVYITTKSGLYKEKPFNAEVDLGLGSNNTRDASATL
                     SGFHNGFYYALHGDSHRTKGISALSKNHFSYTTETGSEVKTGGASERDGFHRDNGSLR
                     LGYDLGNKGVEVLAAQSSQTVHIDGYNSDVSGEYSRTRNQTFKLGGYWGNEQELLKHQ
                     ANISQFNSKATHFGSNARYSNEKQLNANYQLDVNFDREGEVTQAVSLLTDYAKTRYTS
                     DKYLREKTLSEKSAALEYRLFTEQDHSFSISGRYTDNSQFKNSITGRISGAYRLSPNL
                     CSDRLLLELAEPQQIRAMSPYSQKPLMMLDKLNTDKPTVEPELTALLPYADSTILLNE
                     TFYPQLTARLKQLGFKLVALNDSPQTPEQLFTLILQLGELTQNQAKAEKLVERLRLQK
                     IPLKQPLAETLILSETGMIEPHFPQYQTLLDLLGLSPLKSDLTPQNFSLEKLLLAQPK
                     QLLFLTDNQSYNNQAELLKHPALQKIWQKMSQNPPLVLPMKYTYCFDHGVWQGIQLMH
                     KLTP"
     gene            5115..5915
                     /gene="metF"
                     /locus_tag="PXA71_000833"
     CDS             5115..5915
                     /gene="metF"
                     /locus_tag="PXA71_000833"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HDL5104965.1"
                     /translation="MQQKWRMLWDSIDRLSPLKPKFVSVTYGANSGERDRTHSIVKSI
                     QEKTGIISAPHLTGIDATPEELKVIAKDYWDSGIRRIVALRGDIPKGYDKALFYASDL
                     VALLKSVADFDISVAAYPEVHPEAKSAQADLLNLKRKIDAGANHVITQFFFDVESYLR
                     FRDRCVSIGIDCEIVPGILPVTNFKQLQKMAAVTNVKIPTWMGKMYEGLDDDQTTRNL
                     VAASIAMDMVKVLSREGVNDFHFYTLNRSELTYAMCHTLGVRPDLTTA"
     gene            complement(5964..7124)
                     /locus_tag="PXA71_000834"
     CDS             complement(5964..7124)
                     /locus_tag="PXA71_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104966.1"
                     /translation="MKKSILLILSLFSASLFADVQLSPLPLPQIGKVSQFDLSEQGEL
                     VVINQQKQLWRVTQQAQKLADGVSTEIEPKAQYQRIALADQNGHFMLWTADKIYTSNI
                     PLAPKATMTALNFATIAVTKQNGQFKLARIETQGNQATITATAETEVLPDAHPLQIDF
                     DAETPNQGHIAVLAKPDDFTYQHGVLGDDVEAGEIQFLERHTLNPLAEKLTQQGRVFE
                     ANRWATFTENGKTKIVSVISGDGNGASTVVIGVKDGKLSIEAESEPLSTNRWQSPFIF
                     NRKLYAIQMPHLKGNLVEYSLKGNQLAERFITSGLSNHRYGDHETNLVATTETFALIP
                     QMGYQQVVVLDKTGKITELPTALPAGIKQTKADSNKAYLLLKNGEIWVAEEK"
     gene            complement(7184..8200)
                     /gene="galE"
                     /locus_tag="PXA71_000835"
     CDS             complement(7184..8200)
                     /gene="galE"
                     /locus_tag="PXA71_000835"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDL5104967.1"
                     /translation="MAILVTGGAGYIGSHTLVELLNENREIVVLDNLSNSSEVSLERV
                     KQITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGESVREPLRYYQNNVT
                     GSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERIL
                     EDTVKAFPQLSAVVLRYFNPVGAHESGLIGEDPNGIPNNLMPFISQVAVGKLPQLSVF
                     GGDYNTHDGTGVRDYIHVVDLALGHLKALDKHQNDAGFHVYNLGTGTGYSVLDMVKAF
                     EAANGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPN
                     GYKG"
     gene            complement(8288..8449)
                     /locus_tag="PXA71_000836"
     CDS             complement(8288..8449)
                     /locus_tag="PXA71_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HDL5104968.1"
                     /translation="MNETLLNNLVCPVSNEKLEWDKENNRLINPKLNIAYPIKNGIPE
                     LLPEAGVAL"
     gene            complement(8427..9428)
                     /gene="lpxK"
                     /locus_tag="PXA71_000837"
     CDS             complement(8427..9428)
                     /gene="lpxK"
                     /locus_tag="PXA71_000837"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HDL5104969.1"
                     /translation="MKIWQTKSLITWLLSPLSLLFWLISQARKRLYSLNILQSYRSPL
                     PMLVVGNISVGGNGKTPVVVWLVEQLQQRGVKVGVISRGYGGKAKTFPQLVTRESSAE
                     MVGDEPVLIVQRTNVPLAISPNRQQSIELLLNQFEPDIIITDDGLQHYALQRDMEWVV
                     VDGVRRFGNGFVLPAGGLRELPSRLNSVQAVICNGGTPQANEHLMTLEPSDAINLVTN
                     QRKPLSEFTQPCVAIAGIGHPPRFFTMLEKLGIPLAKTQGFADHQAFDKAQLAQFADS
                     QTPLLMTEKDAVKCHDFAQPNWWYVPVSATFSEKSTACLLAPILQKLGKEDERNTTQ"
     gene            complement(9430..9834)
                     /locus_tag="PXA71_000838"
     CDS             complement(9430..9834)
                     /locus_tag="PXA71_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5104970.1"
                     /translation="MKVHEKIKLLRENNHWTQDEMAQKLSMTTKGYAKIERGETISNL
                     PKIEQIAEVFNMDICELLSYGEEGKIYINNTDNNLTNSFISLGNGVEEIQRLQLIISH
                     KDELLAHKEEIIENQKRELALLRDLVETLKNK"
     gene            9969..10151
                     /locus_tag="PXA71_000839"
     CDS             9969..10151
                     /locus_tag="PXA71_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104971.1"
                     /translation="MNNQYNPLYGMLGILASAASVILPLYAAYKDYQFGENMLSLMDI
                     IIFPLGIVRGLMYLFG"
     gene            10155..10484
                     /locus_tag="PXA71_000840"
     CDS             10155..10484
                     /locus_tag="PXA71_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5104972.1"
                     /translation="MKKYLFFAFMTLSNVAYPNLDEWYSASDKERREFIAKHFAEETV
                     RSDRNTPYDYAMCTGRMFAKQLTRDEVKDYPLANTKPQYLTRDRRIEIMSNLPREILQ
                     NCAKYIQ"
     gene            complement(10520..11272)
                     /locus_tag="PXA71_000841"
     CDS             complement(10520..11272)
                     /locus_tag="PXA71_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDL5104973.1"
                     /translation="MAYKPPFTVTTKMLNLVVEISHKLGTLQLDFERNLHLRKNNRLR
                     SIQASLAIEANSLTIEQVTAIIKGKKVLGHPKDIREVKNAYDAYDEMMHYNPYSIKDF
                     LKAHKFLTADLVNDAGAFRSKDVGIYNFSGQLVHMGARPQFVENLINELFSWAKQDDT
                     PALIKSSVMHYEIEMIHPFSDGNGRMGRLWQNVLLAQWNPLFAWLPIETMVYENQQRY
                     YQMLSLADSQNDSTGFIEFMLEMILETLLKLK"
     gene            complement(11311..12558)
                     /gene="clpX"
                     /locus_tag="PXA71_000842"
     CDS             complement(11311..12558)
                     /gene="clpX"
                     /locus_tag="PXA71_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HDL5104974.1"
                     /translation="MAFEKEPHCSFCGKKRTEVDQLVEGTEGYICNECIEESYALLHG
                     EEEPLIDENQDDEGSFFTNVPTPHELHAHLDDYVIGQEHAKKVLSVAVYNHYKRLRSA
                     LSNHQATNGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVGE
                     DVENVIQKLLMKCDFEAEQAERGIVFIDEIDKITRKSESASITRDVSGEGVQQALLKL
                     LEGTVANINPQGGRKHPKGETIPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFAA
                     ALKKDKDRQDLTELFKQVEPEDLVKFGLIPELIGRLPVVTPLQELDEEALIQILTEPK
                     NAIIKQYQALFEMEGVELHFTKDALISIAQKAISRKTGARGLRSIVENLLLDTMYDLP
                     TLNAKKVTIGKGCVENGDKPKVE"
     gene            complement(12558..13151)
                     /gene="clpP"
                     /locus_tag="PXA71_000843"
     CDS             complement(12558..13151)
                     /gene="clpP"
                     /locus_tag="PXA71_000843"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDL5104975.1"
                     /translation="MALVPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLI
                     VAQLLFLEAEDPEKDIYLYINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQAASMGAF
                     LLSAGAKGKRFALPHARIMIHQPLGGARGQATDIQIQAEEILRLKATLTRRMAEHSGQ
                     SYEKVLADTERDNFMSAEEAAEYGLIDKVLTSRSEVA"
     gene            13263..13646
                     /locus_tag="PXA71_000844"
     CDS             13263..13646
                     /locus_tag="PXA71_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufE family protein"
                     /protein_id="HDL5104976.1"
                     /translation="MTLTEIYQKFERCKSWEERYRLLIQLSRLLPKPSEQELAQIAEI
                     EGCESRLWFEFQAEPRKVVAYSDARLMQGILFIVSVALTEKTAEELKGFDLKTMFDEL
                     KISQNLTSTRLNGLGQLQKHIMMNL"
     gene            complement(13750..13826)
                     /locus_tag="PXA71_000845"
     tRNA            complement(13750..13826)
                     /locus_tag="PXA71_000845"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13790..13792),aa:Asp,seq:gtc)
     gene            complement(13915..14670)
                     /locus_tag="PXA71_000846"
     CDS             complement(13915..14670)
                     /locus_tag="PXA71_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5104977.1"
                     /translation="MKKSIYDTPIFFERYQQLRQNPISMNEVVEKPTMFSLLPDLTGK
                     KVLDLGCGTGVHLAHYLTLGAEKVVGLDLSELMLQQAESDLSAHWQKGNDFSLYCLPM
                     ERLNEISEGDFDVVTSSFAFHYIADFSELLAKISQKMTACGTLIFSQEHPIVTCYREG
                     YRWEKNQEKQQVAYRLNYYREEGERDRSWFQQPFKTYHRTMATIVNNLIQGGFEIVQM
                     EEPMLAGQPRWHNEFKDLQHRPPLLFIKAIKQK"
     gene            complement(14730..15725)
                     /gene="trpD"
                     /locus_tag="PXA71_000847"
     CDS             complement(14730..15725)
                     /gene="trpD"
                     /locus_tag="PXA71_000847"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDL5104978.1"
                     /translation="MQALLDKLFANQALAQAESHRFFSEVIKGNVSNEQLAAALIALK
                     LRGETVDEIAGAAKAALENANPFSTPDYPFADIVGTGGDGHNTINISTTSAIVAATMG
                     YKIAKHGNRSVSSKTGSSDVLSHLGINVDVSPETARLALDETNICFLFAPTYHSGFKY
                     AAPVRQALKTRTIFNILGPLVNPAHAKRQLLGVYSPELVKVYAETVKALGYEHTIVVY
                     GAGLDEVAVHGETQVAEIQNGQIDYYTLTPEDFGIERHSLEDLKGGEPAENAEKVTAI
                     LQGKGKLAHIDAVAANVALLMKTFGEDDLKANVQKVKETLESGKALETLRKLSTY"
     gene            complement(15743..16129)
                     /locus_tag="PXA71_000848"
     CDS             complement(15743..16129)
                     /locus_tag="PXA71_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005543439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HDL5104979.1"
                     /translation="MISVYGLKQTLADRRALIADVIFDCMQMSLGVPKQRHALRFDLL
                     DAENFYPPINRSQDFIVIEINLMQGRSEQLKKRLIKGLFSALHTKVGIVPMDVEITIK
                     EQPEHCWGFRGMTGNEATDLEYQAHR"
     gene            complement(16122..16712)
                     /locus_tag="PXA71_000849"
     CDS             complement(16122..16712)
                     /locus_tag="PXA71_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDL5104980.1"
                     /translation="MANILFIDNFDSFTYNLVDQFRELGHQVTIFRNDYPLEDFLAKA
                     ETTENCLVALSPGPGNPAEAGNLLEIIRRLKDKVPMIGICLGHQALIEAFGGKVVHTG
                     TVLHGKVSRIEHDNQAMFSGINNPMLVARYHSLMGDELPAEFIVNAKFEHIVMAIRHK
                     TLPICGFQFHPESILTVQGTKLLKQSVEWLLGEKND"
     gene            complement(16722..18278)
                     /gene="trpE"
                     /locus_tag="PXA71_000850"
     CDS             complement(16722..18278)
                     /gene="trpE"
                     /locus_tag="PXA71_000850"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HDL5104981.1"
                     /translation="MPQLTITQTELPYFADTTRVYYALCGERPHTLLLDSAEIQSKNS
                     VKSLLFAKSAVHIFCEDQTVTFHALTPNGEAVLPLIANALSLLNPAPTCKFLDKNDRL
                     QAIFPTISNQLDEDSKLKTTTVFDGLRTVSQLFADSTSPIYLGGLFSYDLVANFIPME
                     NISLQDDGLSCPDYTFYLAEQLVTIDHQTETAVLNTFCFEPNEQTNLNQQAVEFTQKL
                     ANLSHIELPLANQTATSEATANIEDEDFKAIIRKLKHHINIGDVFQIVPSRRFSLPCP
                     NTLASYKQLKINNPSPYMFYMQGENFTLFGASPESALKYSQANRQLEIYPIAGSRPRG
                     FDEQGNIDPELDSRLELELRLDQKELAEHLMLVDLARNDVARVSESGTRRVVDLMQID
                     RYSQIMHLVSRVIGTLRKDLDALHAYQACMNMGTLTGAPKIKAMQLIYQVEQQKRHSY
                     GGAVGYLTSDGNLDTCIVIRSAFVQNGIAYVQAGCGEVLDSDPQLEADETRHKARAVL
                     KAIGQVNAKA"
     gene            18420..19037
                     /locus_tag="PXA71_000851"
     CDS             18420..19037
                     /locus_tag="PXA71_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HDL5104982.1"
                     /translation="MTQFFYIHPDNPQQRLINQAVEIIRNGGVIVYPTDSGYALGCAM
                     GDKHAMDRIVAIRKLPENHNFTLVCSDLSELSIYALVNNQAYRLIKNNTPNPYTFILP
                     ATKELPRRLMTKRKTVGIRVPDNAIALALISALGEPILSCSLMLPETEMTESDPDEIR
                     DHLQNRVDLIIHGGYLGQQPTTVVDLTDDVPVIIREGSGDPTSFN"
     gene            19183..20250
                     /gene="rluB"
                     /locus_tag="PXA71_000852"
     CDS             19183..20250
                     /gene="rluB"
                     /locus_tag="PXA71_000852"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HDL5104983.1"
                     /translation="MTTFQKKSTATFRADKRGESRPSFKKEEQKSERKFGKTSEKPPR
                     PTSKPLTQRIAKKVEKTTASEVASQEKKAKVVGEKLQKILARAGQGSRRELEEIIAAG
                     RVSVDGKMATLGDRVQVSSSTKIRIDGHLVNLMPAQKEICRVLMYYKPEGELCTRSDP
                     EGRSTVFDRLPRLSGARWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVR
                     VFGNIDDAMLQRLRKGVQLEDGPANFKQIKVVGGTGLNQWFDVTLTEGRNREVRRLWE
                     SQGVEVSRLIRIRYGNIKLDKGLPRGGWEEMGLEQVNYLRELVGLPPETETKVEVGVN
                     RRRTNIRQIRKAVKQHQKYRG"
     gene            20316..22088
                     /locus_tag="PXA71_000853"
     CDS             20316..22088
                     /locus_tag="PXA71_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HDL5104984.1"
                     /translation="MSWDIVATLAVTGIAVFLFATEKMRMDVVAILVLCSLVLLGQVD
                     TKSALSGFSNSATVTVTAMFVLAAGLQNSGALDSVGSLLAKVKSPWLFLLVLCGVNAA
                     VSPFVNNTAVVAVLIPIVIAAAQNIKMAPSKALIPLSFSSQMAGVCTLIGTSTNLLVN
                     AIAQKQGHSGFGMFEFAPLGIIFLVVGVAYLLVTSRFLLPESHLQLEDGEGFGKYVSE
                     LKVNKDSVLIGKSTFESGLNEEFNLFTIGVLRDGERLSTPSHQVLQKHDILLLRGESE
                     NLAKVREKYGLHHVVYGRRENDEDNLDEDLMVAEVMISPISRWIGGTIPILQQRWNKN
                     ATVLGIQRQSKVIRERLRTTAFKMGDILLLTLPKEDMETLRQDKDFIVLSSDLVKTEE
                     SWKSKFALGVMVLVVATAALGWVPISVSALIGAVAMCVAGCLTAEEAYQSIDWKIILV
                     LAGLLPLGEAMANSGAAQFIVDNTLGKVGEFGPLVVLAVLYLLTMVLTEFMSNAGTAV
                     LLTPIAVSTAKMLGVDASPFIIAVMFAAATSFMTPVGYQTNTMVYGAGGYKFTDFIKI
                     GLPLNVIYWILGIVLIPIFFPFNP"
     gene            complement(22178..26329)
                     /locus_tag="PXA71_000854"
     CDS             complement(22178..26329)
                     /locus_tag="PXA71_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5104985.1"
                     /translation="MNKIYRIVWNHAKRTWIVASELSRSANKSNATNTSLTTNIIKLS
                     TLSLALSAGFASAATYSPTYGTIPDNNPQTSIAIGDGSKVNSTLVSTITGLEGNSGKV
                     STALGYNTTATADFSTALGGFANASFASTAVGGQATADKRSVAVGYNATAMGLREVFI
                     GDHAGLNHSNSTEYNIGIGYSASSNVTGNNTISIGNTAGDGTSGSHNIAIGTYANAKL
                     AGPTTNVTSDDNIAIGNSALANGVNNYKTTAATGETVIGKATAVGSHANATGIVSSAY
                     GAEANATAIHSTAIGAKSQANGDNSTAIGYEAKTSGHGATSLGYYANATANLTTAVGT
                     NAGATSDYASAFGREANASGGSATALGNRATASGAASVALGVSAKATNQRTIAIGESS
                     NASAFNATAIGRNATAEHTDSIALGSNSVTAIAIPTTNATVNGITYSDFAGTNPIATV
                     SIGAEGKERTITNVAAGRISLSSTDTINGSQLYLTQQAIGNVAATTANILGGGAAVTE
                     NGNITFPTYALVNGTPDADKEGKQGRYTTVSAALSALNTAVISPLTFAGDTGTNFERH
                     LGSTVKIKGGSTGILTENNIGVVADGNSTLTIKLAEKVNLGANGSLTTGDTVVNNTGI
                     TIANGVADKPVSLTKSGLDNGGNKIANVAAGDVDTDAVNVSQLKQAISKFATHYVSIS
                     DDGIQRANYDNSGSSGVNPMAIGVATSANGELATALGSEAEANGERTTAVGPRATADG
                     MNATSIGYNANANATNALAVGSAANANADTSTAIGTASTATATRATALGSKSEATGEN
                     STAVGYEASSIGADSLAAGYNANASGTQSTALGNSANAGGIWSTSVGRNANAAGSSAI
                     ALGNSANAAGVASIALGVSSQATTTAAVALGQNAKATHQGSVALGTNSETVATVATKS
                     ATLNGNTYTFAGTTPSSTVSIGSVGNERTLTNVAAGRILDSSTDAINGSQLYAAYTEI
                     DGLNTKVNELSNGALTFVDDAGTEIVRKLGTSLNVKGGADATILTDNNIGVVATDANT
                     LTVKLAKDIDLTPAGSVAVGNSKLNNNGLTINNGPSVTMTGVDAGKLKITNVADGDIS
                     PISADAVNGSQLYDTANTIATALGGNSSVNANGAVSAPSYTVVDGAPTNEVSKTVNNV
                     GSAITALNDAVTSPLTFAGDTGTPSQRKLGSTVTVKGGVSNESQLTDNNIGVISNGNG
                     SLTVKLAKDIKVNSVTAQTVTANIAVADTVKTGDTTIDTNGLTIVGGPSITKTGINAA
                     GTKVTNVKAGTEDTDAVNFSQLKATEKNINNKINNIDSKVNKVDKRLRAGIAGATATA
                     GLPQAYLPGKSMLATAGDTYRNEAAIAVGYSRISDNGKVIYKLTGNSNTRGDFGGSIG
                     MGYQW"
BASE COUNT         7288 a         5454 c         5697 g         7985 t
ORIGIN      
        1 taaaagaaaa aactaattta tggaataata ttgagcaact tcattttgca ttagttcagg
       61 cagagttaaa atattcaggt agcaatattc caagtgaata ttctaaattt aacttggaaa
      121 atgtgcttat tgattttcct aacaagacaa attctgtagc atatcagaat ctagttattc
      181 acaacgcaaa aacgcgtgca ggaaaattaa aaacacaata tgcaaatgct cacgatttag
      241 gcaatttggt tttagtagag gatatccaaa aaatattttc cgggttatta gaaataattt
      301 atcaagttcg ttgccatttg gtacatggta gcttaagtcc aacacctgaa aaccacgaag
      361 ttgttaaata ttgctatttg attttgtggg attgtttaaa aggattttgt gattagttat
      421 tgtcaataaa gctacaagcg gtcaattctc ccaaaacttt gcaaatttcc ccgcaaaact
      481 gaccgcttgt tctcctctat ccattcacct caaccaactt ttctctctac ccctactcaa
      541 aatcggttaa acaatctgtt gaggtaaatg ttgtgtcgga atgggattta atcttaatga
      601 aactgaaaaa atcttctgcc aagcaaattt ccctaaaatt ggaagttcat ttccaatttc
      661 tcaaaaaatc acccaaaccg gaactacact tccaattttt caatccccca catttccctt
      721 ttctcccaat ccatttcagc tttcacccca aaagccgttg caatattttc ggcatttaag
      781 accgcttgtg tgttgccgct gacgagtaaa ttgccgtttt taagcagaat gatttcatca
      841 caaaaacggt aggcaagggg caaatgatga atcaccacca cgcaggtttg tgttggagtt
      901 agggctttga gctgctgcat aatatcgatt tggtagtagg ggtcgagggc ggcaatcggt
      961 tcatcggcaa gcaagatcgg ggcttgtttc atcaaacaac gggcgagttg cactcgggtc
     1021 tgttcaccgc cggagagctg ttggtaagtg ttgtccagca ggtgagaaat cgccaattgt
     1081 tcggcaaccg aacgcacctt ttgacgctct tgttcaggcg gaagcggtgc gggcaagccg
     1141 agtgcaatca catcatacac cgaaagttgc cacgccacgt tgagctgttg ggcgaggtag
     1201 gcaaattgtc ggctcctctc aacggcggaa agggcgtgca gtttgcaatt ttccagccaa
     1261 atttcaccgc ttgtcgggcg tagaatgccg gcaatcgctt tgagcaacga ggatttccct
     1321 gccccgtttg cgcccataat gccgatcaat ttgccttttg gcagatagca agagaggtgt
     1381 tgaataccgt gggcaagggt gagattttca atcttgatca ttgtgccaat ctccattgct
     1441 gggtgaataa aatccaaatc aaaaacggta cgcccaaaat tgccgtgagc gtgccgatgt
     1501 aaattcgggc aaaaaacggc acatattgca ccgccagatc tgcaatcagc agtaacaacg
     1561 ccccgattaa agcggaggta agataaagct gggacggcgg ttttttcagc caaatacggg
     1621 caagatgagg ggctatcaag ccgataaaac cgatggtgcc ggtctgtgga atcgttgctc
     1681 cgaccaacag cgccacgcca atgctaacgg taaaaaaact gcgttgcagg ttgatgccca
     1741 ttgttgctgc cgtctcttcg ccaaaggtga gcaggtcgag ataacgccgt tcccgataga
     1801 ggcagacaat gccgagcaag atcaacggta acgcccaaca tactgcctct gcggttgccc
     1861 agactaatga gccttgcaac cagcggtaga gttccgccaa cgcccacggg ctttcggcat
     1921 tggaaagcag taaagtcacc gctgccccga gcaacacgtt taccgccacg ccacttaaaa
     1981 tcatcattgt tgtgccgtgg cgaaagctaa tcagccacac cagcaaaaat gcccccagcg
     2041 cccctgccac accgccaaac agtagccagc ccatcggggc tgaaaaatag tagagcagaa
     2101 atacgctcac cgccgttgcc cccgaactgc tcccaagcaa accggggctg gcaagcggat
     2161 ttttaaacac gccctgcatc gcattgccgg caagcgcaag gctggcgccc gtcagcaccg
     2221 ccaagccaat acggggcagt cgaatttcac ccagcaccag ccagcgcaga tcgcttagca
     2281 cgccttccgc atttttaagc aaggcaaaat cgctcagttg gtaaaaggct gcgttgctaa
     2341 caatcagcaa caacaagctt ccaagcacaa tgtttaattt cttcattctt ctttctctca
     2401 tcaaacgtgc aaattatacc atagcgccaa agtcaagctg aaaacgctat ttttgcgatc
     2461 atcatcgaaa aactagcgtt tgccgaatgt aacccacgac aggctttgct atattccttc
     2521 aatcagccta agttttgtat ttaaaacatt acagattggg ggtagaatgt accatattga
     2581 acgcactgaa attttcgacc aatggcttga aaatttaaaa gatccacttg ctgtggtgac
     2641 cattgcaaga cgtattgaac gtgccgaaag cggaaatttt ggcgatacca aatatatcgc
     2701 agaaggaatt tccgaaatga ggctaaacgt cagcaaaggt tatcgccttt actatgcgca
     2761 aaaaggtagc attatttata tactactaaa tggcggacat aaaggcacgc aacaagctga
     2821 tattgataaa gctaaaatgc tatgggcaga aattaaacaa catatggcag aacaggagaa
     2881 aaagaatgaa cgaattatat gacgccccaa ttccacaagc tactcgtgaa aaatttggca
     2941 ttcaaccttt cgatgccgct gaatacctcg ccaatgacga gctaatcgcc ctttatttgg
     3001 cggaaacatt gaaagacggc acggacgagg agtttattca agcattgaat accgtggcac
     3061 gagcgaaagg aatgaatgag ttagcgaaaa aagcagggat cgggcgtgaa agtttgtatc
     3121 aaagcctttc cagcagtaag ccccgttttg agactatccg caaaattatt agcgcattaa
     3181 atttggagtt gtcggtcgtt aaggcgtaag tttgtgcatt aattgtatcc cctgccaaac
     3241 cccgtggtcg aaacagtagg tgtatttcat cggtaggaca agcggtggat tttggctcat
     3301 tttttgccat attttttgta atgctgggtg tttgagcagt tcggcttggt tgttatagct
     3361 ttggttatcg gtgaggaaca ataactgttt gggttgcgct aacagcagtt tttctagcga
     3421 gaaattctgt ggcgtgaggt cgctttttaa tggtgacaga ccgagaagat ccaacaacgt
     3481 ttgatattgc ggaaaatgcg gttcgatcat acccgtttcg cttagaatta aagtttcagc
     3541 aagcggttgt tttagcggaa ttttttgcaa acgtagccgt tccaccagct tttccgcttt
     3601 ggcttgattt tgggttagct cgcccagttg taaaatcagt gtgaaaagct gttcgggtgt
     3661 ttgcggactg tcgtttaatg cgactaactt aaagccaagc tgtttcagcc gtgcggtgag
     3721 ttgcggatag aaggtttcat tcagcaaaat ggtgctgtcg gcatagggca acagggcggt
     3781 gagttcaggc tcaacggtgg gcttgtccgt gttcagttta tccaacatca tcaacggctt
     3841 ttgggaatag ggcgacatcg cccgaatttg ctgtggttcg gcaagttcca gcaacagacg
     3901 gtcgctacac aaatttggcg ataaacggta agctcctgaa atacgcccag tgatagaatt
     3961 tttaaactgt gaattatcgg tgtaacggcc actaatagaa aaactgtgat cttgttcggt
     4021 aaataagcga tattctagtg ccgcactttt ttcggataag gttttttcac gcaaatattt
     4081 atcagaggta tagcgtgttt ttgcataatc tgtcagtaaa ctgaccgctt gtgtcacttc
     4141 tccttcacgg tcaaagttta catctaattg ataattcgca ttaagttgtt tttcgttgct
     4201 gtagcgagca tttgaaccga aatgtgttgc tttactattg aattggctga tatttgcttg
     4261 gtgtttcagc agctcttgtt catttcccca ataaccgcct aatttaaaag tttgattgcg
     4321 agtacgggaa tattcaccgc taacgtctga attatagcca tcaatatgaa cggtttggga
     4381 agattgagcg gcaagaactt ctaccccttt gttaccgagg tcataaccta aacgtaaaga
     4441 gccgttatca cgatgaaagc catctcgttc gcttgcacca ccggttttca cttctgagcc
     4501 tgtttctgtg gtatagctga aatggttttt actcagtgcg gaaatgcctt tggtacgatg
     4561 gctatcaccg tgtaaggcat agtagaaacc gttgtgaaat ccggaaagtg ttgcgctggc
     4621 atcacgggta ttatttgagc ctaaaccaag atcgacctcc gcattgaatg gtttctcttt
     4681 gtataaaccg cttttagtgg tgatataaac tacaccaccc atagcactgc ttccccaaag
     4741 ggcggattgc tcgccacgca acacttcgat acgttcgata ttgctaatcg gtaagccacc
     4801 aaaatcgaaa tttccaatat taatcggatt gacttttaca ccgtcaatca caaccgcagt
     4861 atggcgagat tctgcccctc gtaaaaataa gctagtaaga gtaccacgcc caccttgttg
     4921 cccaatcgcc acgcccggca cagtctttaa cacatcactc acataagtcg cattgcgtgc
     4981 ggcaaaatct ttttcggtaa gaaccgtcac gctggaagcg gttttgtctt ggttgattgg
     5041 ggttgcatag gcggaataga ctgttacgga atcaagctga gtcatctcat tttgtgcaaa
     5101 agctgtactt gctagtgcaa cagaaatggc gaatgctgtg ggattctatt gatcgcctaa
     5161 gtcctttaaa accgaaattt gtttcggtaa cttatggagc aaattctggt gagcgagatc
     5221 gtacacacag tattgtgaaa tcaatccaag aaaaaacagg gatcatttca gctccgcact
     5281 taacaggcat tgatgcaaca ccggaagaat taaaggtaat tgccaaagat tattgggata
     5341 gtggtattcg ccgaattgtt gctttgcgtg gcgatatacc gaaaggttat gataaagcac
     5401 tattttacgc ctcagattta gtcgctttat taaaatcagt agcagatttc gatatttccg
     5461 tggctgccta ccctgaagtt caccctgaag caaaatcagc acaggcagat ttacttaact
     5521 tgaaacgtaa aatcgatgcg ggtgcaaacc acgttattac gcaattcttt tttgatgtag
     5581 agagttattt acgttttcgt gatcgctgtg tttctattgg gattgattgt gaaattgtgc
     5641 cgggtattct gccggtgaca aatttcaagc agttgcaaaa aatggcagca gtgactaatg
     5701 ttaagatccc gacttggatg ggtaaaatgt acgaagggtt agatgatgat caaaccacca
     5761 gaaacttagt tgcagcaagt attgcaatgg atatggtgaa agtgctttct cgtgaagggg
     5821 tgaatgattt ccacttctat accttaaatc gtagtgaact cacttatgca atgtgccata
     5881 ctttaggcgt aagacctgat ttaacaactg cataatcgaa cattaaggct gtatagctaa
     5941 atgagctata cctccttata gttttacttc tcttcagcca cccaaatctc gccatttttt
     6001 aataataaat aggctttgtt ggaatcggct ttggtttgtt taattccagc cggcagggcg
     6061 gttggcaatt cagtgatctt gcctgtttta tccaacacaa caacttgttg atagcccatt
     6121 tggggtatca gtgcgaaagt ctctgttgtc gccactaaat tggtttcgtg atcaccatag
     6181 cggtgattgc ttaagccgga ggtaataaaa cgttcagcta attggtttcc tttcaggctg
     6241 tattcaacca aattgccttt tagatgtggc atttggattg catagagctt gcggttaaag
     6301 ataaacggcg attgccaacg gttagtcgac agcggctcac tttcggcttc tattgataat
     6361 tttccgtctt taacgccaat cacaacagtg ctggccccat tgccatcgcc agagataaca
     6421 gaaacgatct tggtttttcc attttctgtg aaagtcgccc agcggttggc ttcaaatact
     6481 cgcccttgtt gggtgagttt ttctgctaag gggtttaggg tatggcgttc tagaaattga
     6541 atttcgcctg cctctacatc atcgcctaat acaccgtgtt gatatgtaaa atcatcaggc
     6601 tttgcaagta cagcaatatg cccttggtta ggtgtttcgg catcaaaatc aatttgcaga
     6661 gggtgagcat caggcaacac ctcggtttct gcggtggcag taatagtggc ttggtttcct
     6721 tgcgtttcaa ttctggctaa cttaaattgt ccgttttgtt tggtcacggc aatggtggca
     6781 aaattaaggg cggtcattgt agctttcggg gcaaggggaa tgttggaggt atagatttta
     6841 tcagccgtcc acagcataaa atgcccgttt tgatccgcta acgcaattcg ttggtattga
     6901 gctttaggtt caatctcggt ggaaactcca tctgccagtt tttgagcttg ttgtgtgact
     6961 ctccataatt gtttttgttg gttaattacc actaattcgc cttgttctga aaggtcaaat
     7021 tggcttactt tgccaatttg gggaagtggg agtggagaaa gctgaacatc agcaaacaaa
     7081 gaagcggaga acaagcttaa gattaacaga atagattttt tcattagcgt tacctaaaaa
     7141 gaagatttaa atgataaagg gagatgttat ctccctttac gctttagcct ttataaccat
     7201 tcgggttatt tttttgccaa ttccaagtgt ctttcatcat ttgttctagc ccacgctcgg
     7261 tttcccaacc cagttgctct aacgcttttt gtggagcgga gtagcaaacg gcaatatcgc
     7321 ccgggcggcg atctaccact ttgtatggaa tagtaatgcc atttgcggct tcaaaggctt
     7381 ttaccatatc tagcaccgaa taacctgttc ctgtgcctaa attgtaaacg tggaaaccgg
     7441 catcattttg gtgcttgtct aaggctttta agtgaccaag tgctaaatct accacgtgga
     7501 tataatcacg cacacctgtg ccatcgtgag tattataatc gccaccaaac accgataatt
     7561 gaggtaattt gcccacagcc acttggctga taaacggcat taagttattt gggataccgt
     7621 ttggatcttc accgattaaa ccgctttcgt gagcccctac cgggttgaag taacgcaata
     7681 ctaccgcact taattgtggg aaggctttaa cggtatcttc aagaatgcgt tcaaccatat
     7741 atttggacgt accgtaaggg ttggttgtgc caccgacagg gcaagattcc acaatcggga
     7801 taatctgcgg atcaccataa acggtcgccg atgaactaaa cacaatggta ttcacattgg
     7861 cttttagcat ctcttctacc aatacaatcg agccggttac attgttttga tagtaacgta
     7921 gcggttctct gacgctttcg cctacagctt ttaaaccggc aaagtgaatt accgattcaa
     7981 tctgattttc cgcaaaaatt ttgcgtaaaa tatcacgatc taaaatatcg ccttgataga
     8041 attttacgct cttgccggtg atctgcttca cacgctcaag tgatacttca gaggaattag
     8101 aaagattatc taacaccacg atttcacgat tttcgtttaa taattcaact aatgtatgtg
     8161 aaccgatgta gcctgcacca cctgtaacta aaattgccat tttatgttcc tctataaaat
     8221 taatacgaac caaggttatt gttgctattt tacccgattt aatcaggctt gctaatattt
     8281 attcagttta taatgccact ccggcttccg gcagtaattc cggaatgccg tttttaatcg
     8341 ggtaagcaat attgagctta gggttaatta atcggttgtt ctctttgtcc cattctaatt
     8401 tttcattaga gacagggcag acgaggttat tgagtagtgt ttcgttcatc ttcttttcct
     8461 agtttttgta gaatcggggc taacaaacaa gcggtcgatt tttctgaaaa tgttgcagaa
     8521 accggtacat accaccaatt tggctgtgca aaatcgtggc attttaccgc atctttctcg
     8581 gtcattaata acggcgtttg gctatcagca aattgagcca gctgagcctt atcaaaggct
     8641 tgatgatcgg caaagccttg agttttggca agcggaatgc ctaatttttc taacatcgta
     8701 aaaaagcgtg gtgggtgacc gataccggca atcgccacac agggttgggt aaattcgctt
     8761 aatggcttgc gttgattggt gactaaatta attgcatcag acggttcaag cgtcattaaa
     8821 tgctcgttag cttgcggtgt gccgccgttg caaataaccg cttgcacgga gtttaaacgg
     8881 ctcggtaatt cacgcaatcc gcccgccggc agcacaaaac cgttaccgaa acgccttacg
     8941 ccatcaacca ccacccattc catatctcgc tgtagggcat agtgttgcaa gccatcatcg
     9001 gtgatgatga tgtccggctc aaactgattt aatagtaatt caatgctttg ttggcggttt
     9061 ggagaaatag ccaaaggcac attggttcgc tgaacaatca gaaccggttc atcacccacc
     9121 atttcagcag aactttctcg ggtaactaat tgcggaaacg ttttcgcttt accgccatag
     9181 cctcgagaaa tcacgcctac ttttacgcca cgctgttgca gttgttccac cagccaaacg
     9241 accactggcg ttttgccgtt gcctccaacc gagatattac cgactaccag cataggcaaa
     9301 ggcgaacggt acgattgcaa aatattcaga gaatataacc gcttgcgagc ttgactaatc
     9361 agccaaaaca gcaacgaaag cggcgaaagc agccaagtga taagggattt tgtttgccag
     9421 attttcatat tatttatttt taagtgtttc aactaaatct cgtaataagg ctaattcacg
     9481 tttttggttt tcgataattt cttctttatg ggctaataat tcatctttgt gggagataat
     9541 aagttgtaaa cgttgaattt cttctactcc atttcctaat gagataaatg aattagtgag
     9601 attattatct gtattattta tgtaaatttt tccttcttcc ccataggata ataattcgca
     9661 aatatccata ttaaatactt ctgcgatttg ttctattttc ggtaaattag agatagtttc
     9721 accacgttct atttttgcat aacctttggt tgtcatactt aatttttgag ccatttcatc
     9781 ttgtgtccaa tgattatttt ctcgcagtaa tttgattttt tcgtgtactt tcatataaca
     9841 cctatagatt gtgggagttg ggatataact tgatgtggta aaggataaat tttgtggatt
     9901 gtagcagttt attgagcaat ttagaataga gtaaatttta tcttaagctc acaggagaag
     9961 aaacattcat gaataatcaa tataatccat tatatggaat gctaggtatt ttagcgtcag
    10021 ctgcatcagt aattttgcct ctttatgcag catataaaga ctatcaattt ggggagaata
    10081 tgttatctct tatggatata attattttcc cgttaggtat tgttcgtgga cttatgtatt
    10141 tatttggata gattatgaaa aaatatttat tttttgcttt tatgacatta agtaatgttg
    10201 cttatcctaa tttagatgag tggtactcag cttcagataa agagcgaaga gaatttatcg
    10261 caaaacattt tgcagaagaa acagtaagaa gtgatagaaa tacaccgtat gattatgcta
    10321 tgtgcactgg tagaatgttt gctaaacaac tgactcgaga tgaagtcaaa gactaccctt
    10381 tggcaaacac taagccgcaa tatttaaccc gtgatagacg gattgagatt atgtctaatt
    10441 tacctcgtga aatattacaa aattgtgcta aatacataca gtaattttat gagtaacacc
    10501 actttggaat taagtggtgt tattttaatt ttaataatgt ctctaaaatc atctccaaca
    10561 taaactcaat aaagccggta gaatcatttt ggctgtctgc gagagaaagc atttgataat
    10621 aacgttgttg attttcgtaa accattgttt caatcggcaa ccaagcgaaa agtgggttcc
    10681 attgtgctaa aaggacattt tgccataatc gacccattct gccgtttcca tcactaaagg
    10741 ggtgaatcat ttctatttca tagtgcataa ccgagctttt aatgagtgca ggtgtatcat
    10801 cttgtttagc ccaagagaac aactcattaa tcaaattctc tacgaattga ggacgagccc
    10861 ccatatgcac aagttgccca ctgaaattat aaatgccgac atcttttgaa cgaaaagccc
    10921 ctgcgtcatt tactaagtca gcagtaagaa acttatgtgc tttgagaaaa tctttaatcg
    10981 agtaaggatt atagtgcatc atttcatcgt aagcgtcata ggcatttttg acttcacgaa
    11041 tatctttggg gtgtccgaga acctttttgc ccttaatgat tgcggtaact tgctcaatcg
    11101 ttaatgaatt tgcctcaata gctaaagagg cttgaattga tctcaagcgg ttattttttc
    11161 taagatgtaa attacgctca aaatccaatt gtagcgttcc caatttatga gaaatttcta
    11221 caaccagatt cagcatttta gtggtaactg taaaaggtgg tttataagcc attttgcaat
    11281 aatcctaaaa aattaaaccg cttgtcattg ttactccacc ttcggcttat cgccgttttc
    11341 aacacagcct ttgccgatgg tgactttttt cgcattgagg gttgggagat cgtacattgt
    11401 gtcaagtaat aagttctcga caatagaacg taacccacga gccccggttt tgcggctaat
    11461 cgctttttgg gcaattgaaa ttaatgcatc tttggtgaag tgcaattcaa cgccttccat
    11521 ttcgaataag gcttgatatt gcttgatgat cgcatttttc ggctcggtta agatttgaat
    11581 cagagcttct tcgtccaatt cttgcagcgg agtcaccacc ggtaaacgcc cgattaattc
    11641 aggaattaag ccgaatttga ctaaatcttc cggttcaact tgtttgaata gctcggttaa
    11701 atcttggcga tctttatctt ttttcaatgc cgctgcaaaa ccgataccac cttgagtgtt
    11761 ggtacgggct tccacgattt tatctaaacc ggcaaaagca ccgccgcaaa taaagagaat
    11821 tttggaggtg tccaccggaa tggtttcgcc tttcgggtgt ttgcgaccgc cttgtgggtt
    11881 aatgttcgcc accgtgcctt caagtagttt taataaggct tgttgaacac cttcgcccga
    11941 tacatcacgg gtaatggatg cactttccga tttacgggtg attttgtcga tttcatcaat
    12001 aaaaacaatg cctcgttccg cttgttcggc ttcaaaatcg catttcatta ataatttttg
    12061 aatcacgttt tcgacatctt ctcccacata gcctgcttgg gtaagggtag tagcatcagc
    12121 taccgcaaaa ggtacgttta aacggcgggc aagggtttct gccaacaagg ttttaccgct
    12181 accggtcggc ccgattaata aaatattact tttacctaac tctacgccat tagtggcttg
    12241 atggtttgac aatgcacttc ttaagcgttt gtagtggtta taaacggcca ccgaaagcac
    12301 ttttttcgcg tgttcttgac cgatgacata atcatctaaa tgagcgtgta attcgtgagg
    12361 tgtcggcaca ttggtgaaaa aactgccttc atcgtcttgg ttttcatcaa ttaacggctc
    12421 ttcttcaccg tgtaataagg cgtaggattc ctcgatacat tcattacaaa tatagccttc
    12481 cgtgccttcg actaattgat cgacttcggt acgtttttta ccgcaaaaac tacagtgggg
    12541 ttctttttca aatgccatta cgccacctca ctgcgagaag ttaatacttt gtcgattaag
    12601 ccatactcag cggcttcttc cgcagacata aaattatcac gctcggtatc ggctaacact
    12661 ttttcatagc tctgaccgct gtgttctgcc atacggcggg taagggtagc tttcaagcgt
    12721 aaaatttctt ccgcttgaat ttgaatatcg gttgcttgac ctctcgctcc acctaaaggt
    12781 tggtgaatca taatacgagc gtgcggcaga gcaaagcgtt taccttttgc cccggctgaa
    12841 agcaaaaatg cccccattga agccgcttgc cctgtgcaaa gggttgctac atcgggtttg
    12901 atgaagttca ttgtatcgta aattgccaag cctgctgtta ccacgccacc cggtgagtta
    12961 atgtataaat agatgtcttt ttccggatct tcggcttcta aaaacagaag ttgtgccaca
    13021 atcaggtttg ccatattgtc ttccacctga ccgtttaaaa aaataatacg ttcttttaat
    13081 aaacgtgaat aaatgtcgta agaacgttcg ccttttgagg tctgttccac caccattggg
    13141 actaatgcca ttttgttttc ctctgtcgta atacaaaatc tcgctattct agcaaatttt
    13201 cagaaaatca ttaacaacaa gcggtcagat tgttaaaatc ttttgcaaat gatgaggaaa
    13261 ttatgacatt aacagaaatt taccaaaaat ttgaacgttg taaatcgtgg gaagaaagat
    13321 accgcttgtt aattcagcta agtcgcttgt taccaaaacc aagtgagcaa gagttggcac
    13381 aaatagcgga aattgagggc tgtgaaagcc gtttatggtt tgaatttcaa gctgagccac
    13441 gaaaagtagt ggcatatagc gatgcccgtt taatgcaggg gattttattt attgtgagtg
    13501 tagctttaac tgaaaaaacg gcagaagagc tgaaaggctt tgacttaaaa acgatgtttg
    13561 atgagctaaa aatttcacaa aatttaacca gcacaaggtt aaatgggttg ggtcagttac
    13621 agaaacatat aatgatgaat ttgtaattca ccctcgcccc ttgtgggaga gggtgaataa
    13681 aatccgcagg attttattcg ggagagggga atataaaaaa cctctgattt ctcagaggct
    13741 taaatttgtt ggcggaacgg acgggactcg aacccgcgac cccctgcgtg acaggcaggt
    13801 attctaacca gctgaactac cgctccatac tggtgctaaa ataatagtgg tttcctcaac
    13861 attgagcaaa tagtttttgc aaaatagtgt ttaattggtt gtaaaataac cactttattt
    13921 ctgcttgatc gccttgataa acagcaacgg cggacggtgc tgtaaatctt taaattcatt
    13981 gtgccaccga ggttggcctg ccagcattgg ttcttccatt tgcacaatct caaacccgcc
    14041 ttgaataagg ttattcacaa tggttgccat tgtgcggtgg taggttttaa agggttgttg
    14101 aaaccaactt ctgtcccgtt cgccctcttc ccgataatag ttcaagcggt aagcaacttg
    14161 ttgtttttct tggtttttct cccaacgata gccttctcgg taacaggtga caatcgggtg
    14221 ttcttgcgag aaaatcagcg tgccacaagc agtcattttt tgcgaaattt ttgcaagtag
    14281 ttcggaaaaa tcagcaatat aatgaaacgc aaaagagctg gttactacat cgaaatcgcc
    14341 ctcgctgatc tcatttaatc gctccatcgg caggcagtaa agggaaaaat cgttgccttt
    14401 ttgccaatga gcagaaagat cgctttctgc ctgttgtagc attaattcag ataaatccaa
    14461 ccccaccact ttttctgcac cgagcgttaa ataatgggct aaatgaactc ctgtgccaca
    14521 acctaaatcc agcacttttt tgccggttaa gtctggcagt agagagaaca ttgttggctt
    14581 ttccaccact tcattcatac ttattggatt ttgtcgaagt tgttggtaac gctcaaagaa
    14641 aatcggagtg tcgtaaatgc tttttttcac ttaatagcct ttaaacaaat ataaaataag
    14701 gcgggttaaa acccgccact acgatatgat tagtaagtcg ataattttcg caaagtttct
    14761 aacgcttttc cactctcaag cgtttctttt actttttgca cattggcttt taaatcatct
    14821 tctccaaagg ttttcattaa taatgcgaca tttgctgcca ccgcatcaat atgagccagt
    14881 ttaccttttc cttgtaaaat agcggttact ttttcggcat tttctgcagg ttcaccgcct
    14941 ttgagatctt ctaacgaatg gcgttcaatg ccgaaatctt ccggcgttaa ggtgtaatag
    15001 tcgatctgtc cgttttgaat ttccgcaacc tgcgtttcgc cgtgaacggc aacttcatct
    15061 aaacctgcac cgtataccac aatagtgtgt tcgtaaccta aggcttttac ggtttcagca
    15121 tagactttca ctaactcagg ggagtacaca ccgagtaatt ggcgtttagc gtgagccggg
    15181 tttaccaacg gccctaaaat attgaaaatc gtgcgggttt ttaaggcttg gcgaacaggg
    15241 gcggcatatt tgaatccgct gtggtaggtt ggggcaaaca aaaagcagat gttggtttca
    15301 tctaaagcaa ggcgtgccgt ttcaggtgaa acgtcaacat taatacctaa atggcttaat
    15361 acatcgcttg agccggtttt acttgatacg ctacggttgc cgtgtttggc aattttatag
    15421 cccattgtgg cggcaacaat cgcacttgtg gtagaaatgt tgatggtatt atgcccatcg
    15481 ccacctgtgc cgacaatatc cgcaaaaggg taatcaggcg ttgagaacgg attggcattt
    15541 tcaagtgcgg cttttgcagc acctgcaatt tcatcaacgg tttcgccacg cagttttaga
    15601 gcgattaagg cagcagcaag ttgttcattt gatacattgc ctttaataac ttcactaaaa
    15661 aaacggtgag attccgcttg ggctaaggct tggttggcga ataatttatc taaaagtgct
    15721 tgcatagtct cttccttttt aattagcgat gtgcctgata ttccaaatcg gttgcctcgt
    15781 tgccggtcat tccacgaaag ccccagcaat gctctggctg ttctttaatg gtgatttcaa
    15841 cgtccattgg cacaatgccg actttggtgt gtaaggcact aaatagtcct ttaattaagc
    15901 gttttttgag ctgttcgctc cgcccttgca tcaggtttat ttcaatcaca ataaaatctt
    15961 ggctacggtt aattggggga tagaaatttt ccgcatccaa taagtcaaaa cgcaaagcgt
    16021 ggcgttgttt tggtacgcca aggctcattt gcatacagtc aaaaatcacg tctgcaatca
    16081 gggctctgcg gtctgctaag gtttgtttta atccatatac actaatcatt tttttctcct
    16141 aataaccatt ccaccgactg cttaagtaat tttgtgcctt gcacggttaa aatggattcc
    16201 gggtggaact ggaaaccgca aatcggtaag gttttgtggc gaattgccat cacaatatgt
    16261 tcaaatttcg cattaacgat aaattctgcc ggtaattcat cgcccattaa tgagtgataa
    16321 cgagcgacaa gcattggatt gttaatgcct gaaaacatcg cttggttatc gtgttcaata
    16381 cgagaaactt tgccgtgcaa tactgtgccg gtatgcacta ctttgccgcc aaaggcctca
    16441 attagagctt gatgtcctaa acaaatgcca atcatcggta ctttgtcttt cagacggcga
    16501 ataatttcca ataaattgcc tgcctcagcc ggattacccg ggccggggga aagggcaacc
    16561 aaacaatttt cggtggtttc agctttggct aaaaaatcct caagcggata atcattgcgg
    16621 aaaatcgtta cctgatgccc taattcacga aattgatcga ccaagttata ggtaaaagag
    16681 tcgaaattat caataaaaag aatatttgcc atagtttgtc cttatgcttt tgcattcacc
    16741 tgcccaatcg cttttaacac cgcgcgtgct ttatggcgtg tttcatctgc ctctaattgt
    16801 ggatcggaat ccagcacctc accacaacca gcttgcacat aggcaatgcc attttgaaca
    16861 aaggcggaac ggatcacgat acaggtatct aaattgccgt ctgaggttaa atagcccacc
    16921 gcaccgccgt agctatggcg tttttgttgc tcgacttggt agatcagttg cattgcctta
    16981 attttcggag caccagttag cgttcccata ttcatacaag cttgataagc gtgcagagcg
    17041 tcaagatctt ttctaagtgt gccgatcaca cgagaaacta agtgcataat ttgcgaatag
    17101 cggtcaattt gcattaaatc aaccacacgg cgagtgccgg attcgctcac acgagccaca
    17161 tcattgcggg caagatcgac taacattaaa tgttcggcaa gctctttttg gtctaaacgc
    17221 agttctaatt ccaaacggga atctaattca ggatcgatat taccttgttc atcaaaaccg
    17281 cgtgggcgag agccggcaat cgggtaaatt tccaactggc ggttggcttg cgaatatttc
    17341 aacgcacttt caggcgacgc cccaaacaga gtgaaatttt cgccctgcat atagaacata
    17401 tacgggcttg gattgttgat tttgagctgt ttatagctgg caagagtatt cgggcaaggc
    17461 aagctgaaac ggcgagaggg cacaatttgg aacacatcac cgatattaat atggtgtttg
    17521 agtttgcgga taatcgcttt gaaatcttca tcttcaatat tggcggttgc ctcactcgtt
    17581 gcggtttggt tcgctagagg cagctcaata tgtgacagat ttgcaagttt ttgcgtaaat
    17641 tcgaccgctt gttggttcaa attggtttgt tcattcggtt caaaacagaa ggtgtttagc
    17701 accgcagttt cggtttggtg gtcgattgta accagttgct ctgctaaata gaaagtgtaa
    17761 tctgggcaac ttaagccatc atcttgcagg ctgatatttt ccatcggaat aaaatttgcc
    17821 accaaatcgt agctaaataa tccgcccaaa tagataggcg atgtggaatc agcaaacagt
    17881 tggctcaccg ttcttagccc gtcaaacacg gtggtggttt tgagcttgct gtcttcatct
    17941 aactggttgc tgatggttgg gaaaatcgct tgcaagcggt cgtttttgtc taaaaatttg
    18001 caagtcggag cagggtttaa caggctcaat gcgtttgcaa tcaaaggtaa aaccgcttct
    18061 ccgtttgggg ttaaagcgtg gaaagtcacg gtttgatctt cacagaaaat atgcactgcc
    18121 gatttcgcaa acagcaaact ttttacactg tttttacttt gaatttccgc tgaatctaat
    18181 aatagcgtat gtgggcgttc gccgcataat gcgtaataaa cacgggtcgt atcggcaaaa
    18241 tagggtaatt ctgtttgagt aatcgttaat tgaggcatag caaattccta ttcaattttt
    18301 cgtactatta aactagtaca ttaaaaagaa gtcaagcaat tattccagat aattatgcga
    18361 gcttgggcga acttggtgta taattagccc aatttttaga aagtcgaagg cttgagacta
    18421 tgacacaatt tttttatatc caccccgaca acccacagca acgcttaatt aaccaagcgg
    18481 tagagattat tcgaaacggt ggcgtaattg tttaccctac cgattcaggc tatgctctcg
    18541 gttgtgcaat gggcgataag cacgcaatgg atagaattgt agcaattcgt aaattgccgg
    18601 aaaatcacaa ttttacctta gtttgtagtg atttatccga gctttctatc tacgcgttgg
    18661 tcaataatca agcctatcgc ttaattaaga ataatacccc gaatccttat acttttattc
    18721 tgccggcaac taaggaactt cctcgcaggc tgatgacaaa gcgtaaaaca gtggggattc
    18781 gtgtgccgga taatgcgatc gcattggcgt taatttccgc cttaggtgag ccgattcttt
    18841 cttgctcgtt aatgttgccg gagacggaaa tgaccgagtc agaccctgat gaaattcggg
    18901 atcatttgca aaatcgggtg gatttaatta tccacggtgg ttatttaggg cagcagccta
    18961 caacggtagt tgacttaacc gatgacgtgc cggttattat tcgagaagga tcgggcgatc
    19021 caacatcgtt taattaaatt gatgttgtat gattaatata tagaattatg cgtagggggg
    19081 ctgtgccagt ccgtattaat atcgttattt ggacaggcac aggacctgtc cctacaatga
    19141 aaatcaaatt cagacgcttg tgaaagcgac aaaaggaacc ttatgacaac ttttcaaaaa
    19201 aaatcaactg cgactttccg tgcagacaaa cgtggtgaaa gccgtccctc atttaaaaaa
    19261 gaagagcaaa aatctgaacg caaatttggt aaaacgtcag aaaaaccacc acgtccaact
    19321 tctaagccat taacgcaaag aattgcaaaa aaagtggaaa aaacgaccgc tagtgaagtg
    19381 gcatctcaag agaaaaaagc caaagtagta ggtgaaaagc tacaaaaaat cttagcgcga
    19441 gcagggcaag gttctcgccg tgaattagaa gagattatcg ctgctggacg agtgagcgtg
    19501 gacggtaaaa tggctactct tggtgatcgt gtgcaggtta gctcatcgac taaaatccgc
    19561 attgacggac atttagttaa tttaatgccg gcacaaaaag agatctgccg tgtattaatg
    19621 tattacaaac cggaagggga actttgcacc cgttccgatc cggaaggacg atccaccgta
    19681 tttgaccgct tgcctcgttt aagtggcgct cgttggattg cggtcgggcg gttagatatt
    19741 aacacctcag gcttattatt gttcactacc gatggcgaat tagccaaccg tttaatgcac
    19801 ccaagccgtg aagtcgaacg tgaatattcg gtgcgtgtgt tcggcaacat tgacgatgcg
    19861 atgttacaac gcttacgcaa aggcgttcag ttggaagacg gaccggcaaa ctttaaacaa
    19921 attaaggttg tgggtggcac aggcttgaac caatggtttg atgtgacttt aaccgaaggg
    19981 cgtaaccgtg aggttcgccg cctgtgggaa tcgcaagggg tagaagtcag ccgtttgatt
    20041 cgtatccgtt acggcaatat caaattagat aaaggcttac ctcgtggcgg ctgggaagaa
    20101 atgggcttag aacaagtcaa ttacttgcgt gagctggtag ggttaccgcc ggagactgaa
    20161 actaaagtgg aagtgggggt aaaccgccgc cgaaccaata tccgtcaaat tcgtaaagcg
    20221 gtaaaacaac atcaaaaata tcgtggctaa acaccatctt tggggctgca ttagttctgc
    20281 taatgcagct attttctttc aaaaaaggag catttatgtc ttgggatatt gttgcaacat
    20341 tggcggtcac tgggattgcc gtatttttat ttgcaactga aaaaatgcga atggacgtag
    20401 ttgcgatttt agtgctgtgt tcattagtat tattagggca ggttgatacc aaatctgctc
    20461 tgagtggatt ttcaaactca gctactgtaa ccgtaactgc aatgtttgta ttagctgctg
    20521 gtttacaaaa tagtggtgct ttagatagtg taggcagttt acttgctaag gtaaaatctc
    20581 cttggttatt cttgcttgta ctctgtggcg taaatgctgc tgtttctcct tttgtgaata
    20641 atacggcagt ggtcgcagta ttaattccga ttgtgattgc cgcagcacag aatataaaaa
    20701 tggctccttc caaagccctt attccgttat cattttcttc tcaaatggca ggtgtttgta
    20761 cactgatcgg cacttccact aatctattag ttaatgcaat cgctcaaaag caagggcatt
    20821 ccggtttcgg tatgtttgaa tttgcccctt tggggattat ttttttagtg gttggggttg
    20881 cctatttatt agtgaccagc cgtttcttat tacccgaatc acatttgcaa cttgaagatg
    20941 gtgaggggtt tggaaaatat gtttctgaac ttaaagtaaa taaagactct gtattaattg
    21001 gcaaaagtac atttgaatca ggattaaatg aagaatttaa tctatttact attggtgttt
    21061 tgcgtgatgg ggaaagatta tcgacaccga gtcatcaagt attgcaaaaa catgatattt
    21121 tattgttgcg gggtgaatcg gaaaatttag caaaagtacg agaaaaatat ggattgcacc
    21181 acgttgtgta tggacgccgt gagaatgatg aagataatct ggatgaagac ttgatggtgg
    21241 ctgaagtgat gatttctcct atttctcgtt ggataggagg gactattcct attttacaac
    21301 agcgttggaa taaaaatgca acggtgttag gcattcaacg ccaaagtaaa gtaattcgtg
    21361 agcgtttacg caccactgct tttaaaatgg gggatatttt attactcaca ttaccaaaag
    21421 aggatatgga gacgttacgc caagataaag actttattgt gttatcttct gatttagtca
    21481 aaacggagga atcgtggaaa agtaaatttg ctttaggggt aatggttttg gtggtggcaa
    21541 cagcagcctt aggctgggtt cctatttcag tgagtgcctt aattggtgca gttgcgatgt
    21601 gtgttgctgg ttgtttaacg gctgaagaag cctatcaatc tattgactgg aaaatcattt
    21661 tagtcttagc tggattactg ccattaggtg aagcgatggc aaatagtggg gcggcgcaat
    21721 ttattgttga taacacgctt ggtaaagtag gggagttcgg gcctttagtg gtgttagctg
    21781 tattatattt actgacaatg gtgttaaccg aatttatgag taatgcaggg actgccgtgt
    21841 tgcttacgcc tattgcggtt tctaccgcta aaatgttagg ggtagatgct tccccattca
    21901 ttattgccgt aatgtttgcg gctgcgacca gctttatgac ccctgttggc tatcaaacca
    21961 acacgatggt atacggtgca ggtggctata aattcacaga ttttattaaa attggtttac
    22021 cgctaaatgt aatctattgg attttaggga tagtattaat tccgattttc ttccctttta
    22081 atccataatt gatagataat tatagaaaaa aggtttacag atcagaaact ctgtaaacct
    22141 tttttattca gcaataaatc aattttctat tggaaaatta ccattgataa cccatgccaa
    22201 tactaccacc aaagtcgcct ctggtattgc tgttaccagt taatttatag ataaccttcc
    22261 cgttatctga aatccgagaa taacctactg cgattgcagc ttcattacgg tatgtatctc
    22321 cagccgttgc taacatactt ttacctggta gatatgcttg cggtaaacct gcggttgcag
    22381 ttgcaccagc aataccagcg cgtaaacgtt tatcaacttt gtttactttt gaatcaatat
    22441 tattgatctt attattgata tttttttctg ttgcttttaa ttggctaaag ttaactgcat
    22501 cagtatcttc agttcctgct tttacgttag tcacttttgt tcctgctgca ttaatacctg
    22561 ttttagttat actcggtccc cctacaatag ttaatccatt agtatcaatg gttgtatcac
    22621 cagtcttaac agtatcggct acagcaatgt tagctgttac tgtttgagct gtgacagaat
    22681 taactttaat atctttagct aatttaaccg ttaatgaacc attaccattt gaaataaccc
    22741 cgatattatt atcagttagt tgtgattcgt tagatacccc accttttact gtaacagtag
    22801 aacctaattt acgttgagat ggcgtgccgg tatcacctgc aaatgttagt gggctggtta
    22861 ctgcatcatt taacgcagta attgcagagc ctacattatt gaccgtttta ctaacttcat
    22921 ttgtaggagc gccatcaacc acagtatagc ttggggctga aacagcacca tttgcattta
    22981 cacttgaatt accacctaaa gcggtagcaa tagtatttgc cgtatcgtaa agttggctac
    23041 cattaactgc atctgctgag ataggtgaaa tatcaccatc agctacatta gttattttta
    23101 atttgccagc atcgacacct gtcattgtga cacttgggcc attattaatg gttaagccgt
    23161 tgttatttag ttttgaatta ccaacagcta cggagccggc aggagttaaa tcaatgtctt
    23221 tcgctaattt aactgttaat gtgttagcat ctgttgccac tacaccgata ttattatcag
    23281 tcaatatggt tgcatcggcc ccacctttaa cattcagaga agtacctaat ttacgaacaa
    23341 tttcagtacc agcatcatct acaaaagtaa gtgctccatt acttaactca ttcactttcg
    23401 tgtttaaacc atcaatttcg gtataagcag cataaagttg tgaaccgttg atagcatccg
    23461 ttgatgagtc caaaatacga cctgctgcaa cattcgttaa agtacgttca ttgcctacag
    23521 aaccaatact tacagttgag cttggcgtag tacctgcaaa tgtgtatgta ttgccattta
    23581 gcgttgcact ttttgttgca actgtggcta ctgtttcaga gttagtacct aatgcaacag
    23641 aaccttggtg tgttgctttt gcattttggc caagagccac tgcagcagtt gttgttgctt
    23701 gtgatgaaac acctaatgca atagaagcta caccggctgc atttgcacta ttacctaaag
    23761 caatcgcaga gctacctgca gcattggcat ttctacccac agaagttgac catattccac
    23821 ctgcattagc agagttacct aaagcggttg actgtgtacc cgaagcattt gcgttatagc
    23881 ctgcagcaag agaatctgca ccgattgaac ttgcttcata acctacagcg gttgaatttt
    23941 caccggtagc ttcagattta gagcctaatg cagttgcacg ggtagctgtc gctgttgaag
    24001 ctgtaccaat agctgttgag gtatcagcat ttgcattggc tgcagaacca accgcgaggg
    24061 catttgttgc atttgcattc gcattgtagc ctatagaagt ggcattcata ccatcagctg
    24121 ttgcgcgagg accaactgca gttgtacgtt caccgtttgc ttctgcttca gagcctaatg
    24181 cggttgccag ctcaccatta gcacttgttg caacgccgat agccattgga ttaacaccgc
    24241 tagagcctga attatcatag ttagcacgtt gaatgccatc atctgaaata ctaacataat
    24301 gagttgcaaa tttgctgata gcttgtttga gttgactgac attgaccgca tcagtatcta
    24361 catcgcctgc ggcaacattg gcgattttat taccgccatt atctaagcca gatttagtaa
    24421 gacttaccgg tttgtctgca acgccgttag cgatggtgat acctgtattg ttaacaacgg
    24481 tatcacctgt tgttaatgaa ccattagcgc ctaagttaac tttttctgct aattttatgg
    24541 ttaaagtact attgccatca gctacaacac caatattatt ctcggttaat atgcctgtag
    24601 atccgccttt gatcttgact gttgaaccta gatggcgctc aaaattagtt cctgtatcac
    24661 cggcaaaggt taacggactg atcaccgctg tgtttaatgc gcttagtgct gcagaaacag
    24721 tagtgtatct cccttgtttg ccttctttat ctgcatctgg tgtgccattc actaaagcgt
    24781 aggttgggaa agtgatattt ccattttcag taacagctgc cccaccacct aagatatttg
    24841 cggttgttgc agcaacatta cctatagctt gttgtgttaa atataattgt gaaccgttta
    24901 tggtatctgt agagcttaaa gatatacgtc ctgcagcaac attggtgata gttctctctt
    24961 tgccttccgc cccaatactt actgtagcaa ttggatttgt tccagcaaag tcactatatg
    25021 taataccatt tacagttgca tttgtagttg gtatggctat agctgtaact gagttgctac
    25081 ctagcgctat cgaatcggta tgttcagcag tggcatttcg acctatagcg gttgcattaa
    25141 aggcggaagc atttgatgat tctccgattg caattgtgcg ttgatttgtt gctttagcgc
    25201 ttacccctag tgcaacagaa gccgcgcctg atgcagtagc acgattgcct aaagcggttg
    25261 cagaacctcc acttgcattg gcttcacgac caaatgcaga agcataatcg ctggttgcac
    25321 ccgcattagt accaacagca gtagttaaat ttgctgttgc atttgcataa taacctaatg
    25381 aggttgcacc gtggcctgaa gtcttcgctt cataaccaat tgctgttgag ttatcgccat
    25441 ttgcttgaga ttttgcacca attgctgtgg agtgaatagc tgttgcgtta gcttcagcac
    25501 cataggcgga gctaacaata ccagttgcat tggcatgact acctacagca gttgcttttc
    25561 ctattaccgt ttctcctgtt gctgctgtag ttttgtaatt attaacacca tttgcaagag
    25621 cggaattacc gatggcgata ttatcatcac tggttacatt tgtagtaggt cctgctagtt
    25681 ttgcattagc ataagtacca attgcaatat tgtggctacc actagtaccg tctccagcag
    25741 tattaccaat agaaatcgta ttgtttcctg ttacattaga gctagccgaa taaccaatac
    25801 caatattgta ttctgtgctg ttagagtgat ttaatccggc atgatcgcca ataaaaactt
    25861 cacgtaagcc cattgcggtt gcattgtacc ctactgctac ggaacgttta tcggcagtgg
    25921 cttgcccacc aacagctgtt gaagcaaaac tagcgttagc aaagcctcct aatgcagttg
    25981 aaaaatcggc tgtcgcggtt gtgttatacc ctaatgctgt agaaacttta ccgctatttc
    26041 cttctaagcc tgttattgtg cttactagtg ttgagttaac tttagatcca tcaccaattg
    26101 cgatagatgt ttgtgggtta ttatctggta tggtcccata ggttggtgaa taggttgcag
    26161 cacttgcaaa acctgcagaa agcgcaagac ttagtgtgct gagtttaata atattagtgg
    26221 ttagtgatgt atttgttgca ttagatttat tagcacttct tgataattca gaagcaacaa
    26281 tccaagttcg ttttgcatgg ttccaaacaa tgcgataaat tttattcata gaactactcc
    26341 tgttcttatt ttttaataat tttaatgatt tgagtattgc ctagccaaat atatacaata
    26401 ggctgaaaaa ttatataggt gagg
//
LOCUS       DANLRW010000025        26023 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.025, whole genome shotgun sequence.
ACCESSION   DANLRW010000025 DANLRW010000000
VERSION     DANLRW010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 26023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26023
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.025"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            6..284
                     /gene="ftsB"
                     /locus_tag="PXA71_000855"
     CDS             6..284
                     /gene="ftsB"
                     /locus_tag="PXA71_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HDL5104986.1"
                     /translation="MRLLITFFALLLGFFQYSFWFGKNGWSDYQEVQEEIALLKVENT
                     KLTSRNKLIEAEIYDLKNGVDALEERARLEREMVKENEMFYRIVPKNK"
     gene            302..985
                     /gene="ispD"
                     /locus_tag="PXA71_000856"
     CDS             302..985
                     /gene="ispD"
                     /locus_tag="PXA71_000856"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HDL5104987.1"
                     /translation="MKRKIIAVIPASGVGSRMQAEKPKQYLQLKGKTILEHTVSIFLE
                     HPHVEKVIVAVARKDPFYSTLELLKSPKIQLVFGGETRADSVLNALQEINTENAWALV
                     HDAARPCLKRSDLDKLLQINDPQGGILAIPAVDTMKRANGTKIAHTEDRSTLWHALTP
                     QFFPAQALKQALSSAFANKLQVTDEASAMELAGYQPQLVSGRSDNIKITRPEDLALAE
                     FYLTHNLEN"
     gene            987..1466
                     /gene="ispF"
                     /locus_tag="PXA71_000857"
     CDS             987..1466
                     /gene="ispF"
                     /locus_tag="PXA71_000857"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HDL5104988.1"
                     /translation="MIRIGHGFDVHAFGEDRPLMIAGVEVPYHTGFIAHSDGDVALHA
                     LTDALLGAAALGDIGKLFPDTDMQYKNADSRGLLIEAYRQVQEQGYQVGNVDVTIIAQ
                     APKMRPHIDKMRQVIADDLQCDISQVNVKATTTEKLGFTGRGEGIACEAVALLLKRA"
     gene            complement(1581..2438)
                     /locus_tag="PXA71_000858"
     CDS             complement(1581..2438)
                     /locus_tag="PXA71_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL5104989.1"
                     /translation="MMKSLCKFLSIFNRLLLVCLALFSLNATAVTYPEPPNPFYYITD
                     YTKNTLSQQEWRTLEDALIANCAKTSSQIAVVIIPSTEGEAVSTYAHTLFNKWGIGRS
                     KNNENNGILLLIAKNDRKLFIATGRGLEGALPDAIASSIIRNDITPFFKQEQYAAGIA
                     HGLSAIMAAINGEYAPYASYGEEMQEFDDIDGLLFFLFAGIVIFLIFRPRGNSTYISP
                     SSMDQLGQILRESQRRGGGFGGGLGGGFDRGSGGFGGGFGGGFGGSRGSGDSFGGGSS
                     GGGGAGGSW"
     gene            complement(2435..2893)
                     /locus_tag="PXA71_000859"
     CDS             complement(2435..2893)
                     /locus_tag="PXA71_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HDL5104990.1"
                     /translation="MGLFSFLSNKLPIDTQRIEQAIADLEQKTSAELRVVVERKAKIG
                     KTDNAAMLRASELFDELKMRETAEHNGVLIYLSFKPHYAAIIGDEGIHQKVDNDFWQK
                     IYATMCLDCQQGDYTQAICDAIKMVEAPLAHHFPYQADDKNELSNEVVVK"
     gene            complement(2975..3559)
                     /locus_tag="PXA71_000860"
     CDS             complement(2975..3559)
                     /locus_tag="PXA71_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HDL5104991.1"
                     /translation="MKKIFWILLIAMLAVGGYSLTKYNDLMRAEEDINSVWGNVESAY
                     QRRADLIPNLVNTVKGQANFEKETLTSVIEARAKATAVTIDPSNATEEQMAKFQEAQQ
                     GVNSALSRLLVSVEKYPELKAHEAFLNLQAQLEGTENRINVERNNFNEKVKEYNKQVR
                     EFPTKLAAMIMGFKAKPQFKSEAGSDKAPTVNFN"
     gene            3737..4600
                     /gene="rarD"
                     /locus_tag="PXA71_000861"
     CDS             3737..4600
                     /gene="rarD"
                     /locus_tag="PXA71_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5104992.1"
                     /translation="MLKGILASLAANVLFGAVYYFAILLRPLEGEAMFGFRIVVVIPF
                     ILLAIILFKQQSAFADLLQKIRQNPPLVLVILLLALNTGVQLWLFLWAPNHGQALQVS
                     FGYLLLPIVAVALGKMVFKEHFTRLKWLSLLFAVIGVGSSLFFNSTISWATWVAGLGY
                     PLYITLRRYFQINTLATFFVELLLVLPVALYYLSQVEMTPIVAENPQIYFYLGLLGLV
                     SGSAFILYILSSNLLPINVLGLLGYVEPLVMLLISFAIGEKLDANSYILMVCLLVSIG
                     LLSWDSFRSKV"
     gene            complement(4753..5271)
                     /locus_tag="PXA71_000862"
     CDS             complement(4753..5271)
                     /locus_tag="PXA71_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lhr family helicase"
                     /protein_id="HDL5104993.1"
                     /translation="MILLRGDTMQFIEFTDPDSGISYQYSEFTIANVAFIINFCSDAD
                     VISTLSALGKDITNYINTYSCCTIKFMAKEHLENSGSNIDIYAPAANHQFKRKEIIAL
                     QETLERLLFEHYVRFTPESYLFIAERDSLNRMYQRMCVPRCDFMQSFQVVYPLGVNQD
                     CFILITPKGNLK"
     gene            complement(5438..7102)
                     /locus_tag="PXA71_000863"
     CDS             complement(5438..7102)
                     /locus_tag="PXA71_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDL5104994.1"
                     /translation="MNISFVFPQTLGNARRFLVNEMLSAAAKQQGHNVVAANQADFVV
                     LFDNAIPQEAAGKQGAILDLEQAFAQPEASLKQAVENAQTFANATATTAVSAVSSGVK
                     NIVAVTACPTGVAHTFMSAEAIENYAKAQGWNIKVETRGQVGAGNPISAEEVAAADLV
                     FVAADIDVDLEKFKGKPMYRTSTGLALKKTTQEFEKAFAQAKIYEGGVAKADNAEAPT
                     SEKKGLYKHLMTGVSHMLPLVVAGGLLIAISFMFGIEAFKDETIAGGLPKALMDIGGG
                     AAFHLMIAVFAGYVAFSIADRPGLAVGLIGGMLATTAGAGILGGIVAGFLAGYTVKFL
                     NGAIQLPASLTSLKPILILPLLGSAIVGLLMIYVINPPVKALMDALVEWLNTMGQTNA
                     IILGIILGAMMCTDMGGPVNKAAYTFGVGLIASQQYMPMAAVMAAGMVPPIGMAIATL
                     IARSKFNTNQRDAGKASFVLGLCFISEGALPFVAADPVRVIASSILGGATAGAISMAL
                     GITLQAPHGGLFVIPFVSQPLMYLAAIAIGSLVTGVVYAAIKQKAE"
     gene            complement(7128..8072)
                     /gene="fruK"
                     /locus_tag="PXA71_000864"
     CDS             complement(7128..8072)
                     /gene="fruK"
                     /locus_tag="PXA71_000864"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HDL5104995.1"
                     /translation="MRIATVTLNPAFDLVGKLQRIEIGEVNTVETLGLYPAGKGINVA
                     KVLADLGTKLSVTGFLGEENQGDFVNAFKHNDLADEFYRINGKTRINVKITETEADVT
                     DLNFLGFEISESDWEKFVTLSHQWESKFDLVAVCGSLPRGVTPEKFASWLESLHRQGL
                     KVVLDTSNAALTAGLTAHPWLVKPNRRELEVLVGHSLNSIEEIISAAKQLRSRGIENV
                     IISMGEQGSLWLNHEGVLQARPPRCENVVSTVGAGDSMVASLIYGLSQGWSKEQTLRF
                     ASATSALAVVQSNVGIADRAALDDIIKQTDITVISENH"
     gene            complement(8086..9564)
                     /gene="fruB"
                     /locus_tag="PXA71_000865"
     CDS             complement(8086..9564)
                     /gene="fruB"
                     /locus_tag="PXA71_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HDL5104996.1"
                     /translation="MLNLSAKNIRLNGSASNKEEVIRFVAAELVAKGNVAAGYEVGML
                     NRETQTSTFLGNGIAIPHGTLDTRDLVKETGVQIIQLPQGVEWGEGNTAYVVIGIAAK
                     SDEHLTLLRQLTTVLSDEEAAATLAKTQNLDEFIAVLSGKKNLPALSQELISLNIESS
                     SPITLSAINAAKLQEQGYVSQAFISDVVANKALHLGNNLFVVDSAKGNQANGIAIARN
                     TQGQTLLTVAETDNALQPLLTQLLKPEVRSQFAHFSAEQMLGLLKGESVASTPVTNVE
                     ASGNQVVGTFTIRNDNGLHARPAAVLVQTVKPFSSKISVENLDRNTAPASAKSAMKVV
                     ALGASQGHRLRFVAEGEDAQQAIEALQQAIINGLGESVSFVPAVADTIESIAVSAIPA
                     EETATAVDANTKEATFVIKNEHGLHARPSAVLVNEVKKFNAKIEVQNVDKNSPLVSAK
                     SLMKIVALGVTKGTTLRFVASGDDAEVALAAIGAAIEAGLGE"
     gene            9852..12074
                     /gene="glgB"
                     /locus_tag="PXA71_000866"
     CDS             9852..12074
                     /gene="glgB"
                     /locus_tag="PXA71_000866"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching protein GlgB"
                     /protein_id="HDL5104997.1"
                     /translation="MQDYTYSEKDAFFVERLSSGSCNDPFSYLGIHPSNNGVIIRVFL
                     PSAIACQVIDLNGKPVSSMLKIDDRGFFIAELIGKKTDFSYRLLVEYPDSTVDIEDPY
                     RFKTHIQELDNWLFAEGKQLRPYEKLGAHLVTQNEVGGVHFSVWAPNAQRVSVVGDFN
                     HWNGLVHSMRFHPDSGIWDIFLPNVKKGECYKFEVLDRNGVLRLKSDPYAFASQFRPE
                     TASIVSGLPSIVPAEKTCRNANAPDKPISIYEVHLGSWRRNIENNYWLSYEELADELI
                     PYVKDMGFTHIELLPISEFPFDGSWGYQTTGIYSPTSRFGTPEGLSYFIQKAHDKGIG
                     VILDWVVGHFPVDEHGLVYFDGTHLYEHSDPKEGYHKDWNTLIFSYGRNEVSNYLSGN
                     ALYWIERFGIDALRVDAVASMIYRDYSRSDGEWIPNKYGGRENLEAIDFLRHTNNILR
                     DESQGGASIAEESTSFAGVSHSTERGGLGFNYKWNMGWMNDTLRYMQKDPIYRRYHHN
                     LMTFGMTYQYSEQFVLPLSHDEVVHGKGSLLNKMPGDCWQKFANLRAYYGYMWGYPGK
                     KLLFMGNEFAQGKEWNFAESLDWYLLGEEGGEWHKGVLGWVKALNHLYTQTPALFEQD
                     YNPEGFEWLVVDDHDNSVFAFERKAKNGDSVIVVSNFTPIVRENYRFGVNELAEYQEI
                     LNSDLACYCGSNVSNANRFASELIASHGKAYSLSITLPPLSTIFLKRAADKKTKQNKT
                     "
     gene            12098..14110
                     /gene="glgX"
                     /locus_tag="PXA71_000867"
     CDS             12098..14110
                     /gene="glgX"
                     /locus_tag="PXA71_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HDL5104998.1"
                     /translation="MHYFRGKPFPLGNKLDRQAGEFGTNFAIVSQNATAIELCLFDEN
                     HHETRIPMFSSGDTWHIFVAGVQAGTKYGYRVKGIQDEQAGLLFNPQKLLTDPYAKAI
                     EGKPDLSSAEAAAWYKWNDERDNASLAPKSIVIDEHFDWENDSQLFTPWAETIIYEMQ
                     VKGFSQRNFQIPSDIRGTFAGLAHPVSIDYLKTLGITAVELLPVTYHIDETHLQKQGL
                     VNYWGYNVLGNFAIDPNLAADKQNPLKEFKQLVKTLHQAHIEVIMDIVFNHTAESDKN
                     GPMLSFRGIDNTAYWLDKQGEYENWTGCGNTLNLSNPYILCWAIDCLIYWVEECHIDG
                     FRFDLASILGRTPSFSEKADFFTALKSHSKLTHIKLIAEPWDIGVEGYQLGQFPEPFY
                     QWNDCYRDDIRRFWLQNQGDWGLLARRLAGSDDVFTKYSVSKSINFITAHDGFTLQDL
                     TSYQQKHNWANGEQNRDGHNSNYSNNHGVEGQTADELVKKQREITACSLLATLFLSAG
                     VPMLLAGDEIGHSQQGNNNSYCQDNEITWLDWENMNHTRLDYVRSLIRLRKKIALLSK
                     QNNWWQEDSVQWLNPSAQLMNIDDWHNQHNGLVVLLQEEWLLLFNANRQPQPFLLPQG
                     NWKVVLEQAQGILMTDTQAVTLNNMGVCVLQKSDVMFANKLETQYA"
     gene            14103..15416
                     /gene="glgC"
                     /locus_tag="PXA71_000868"
     CDS             14103..15416
                     /gene="glgC"
                     /locus_tag="PXA71_000868"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HDL5104999.1"
                     /translation="MLNQESTALVARQDLTNDTLVLILAGGRGSRLYELTDKRAKPAV
                     YFGGSRRIIDFALSNCINSNLLKIGVITQYAAHSLLRHLQRGWSFLPYERNQYIDMLP
                     ARQQLDENTWYRGTADAVYQNMAMMKSHYRPKYVVILAGDHIYKMDYTQMLKDHVDQG
                     AKCTVGCIEVPRSQATEFGVMAVNEKLKVKEFVEKPADPPAMPGKPDSSLASMGIYVF
                     NADYLYEMLEKEASTPGTSHDFGKDIIPKAVEQGVLYAHPFERSCKGRNASGAIYWRD
                     VGTIDSYWAAHMDLVSEDPELDLYDESWPIHGRPQQTAPARFFYNRARARTLDNSLIA
                     GGCVITDAEISNSVLFNRVHVEAESVIEHTVILPQVTIGKNCVIKRAVIDRHCVIPDG
                     LEIGVNAEEDAKRFRVSKNGIVLVTQSMLDKLAGKEANSDIKYTI"
     gene            15539..16975
                     /gene="glgA"
                     /locus_tag="PXA71_000869"
     CDS             15539..16975
                     /gene="glgA"
                     /locus_tag="PXA71_000869"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HDL5105000.1"
                     /translation="MKVLHICSEMYPLIKTGGLADVMGALPFAQQQAGNDVRVLIPYY
                     PKVAQTLGETVEVATIGTFAGTVSVRFAYFNGLGVYVIDAPHLFMRDGNPYHDSNYQD
                     YPDNYKRFALLGYIGAQLAQGLDHWWGTAQVLHAHDWQAGLACAYLKSWGSNVKTLFT
                     IHNIAYIGRFNAFHLAELGLPWEFFHAEGLEFYGEISYLKAGLYFADRITTVSPTYAR
                     EITEEIAGAGLHGLLATRQYQGRLRGILNGVDAEVWNPETDTHIVVNYRANYMHGKAK
                     NKAELQRIFGLPEDKEALLMVMVTRLTEQKGADFLLANIDTLMQHKVQIIVLGSGSPD
                     LENALRYFQHKYPNQIGVKIGYDEALSHQIIAGGDLILVPSRFEPCGLTQLYGLKYGT
                     LPLVRRTGGLADTVVDSHKESIENRSATGFVFDYPDAPAFLEAAMRAISLWQKQKLWS
                     SVRQNALAQDFGWAKVAEQYQNLYHEII"
     gene            17070..19570
                     /locus_tag="PXA71_000870"
                     /pseudo
     CDS             17070..19570
                     /locus_tag="PXA71_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651737.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen/starch/alpha-glucan phosphorylase"
     gene            complement(19657..20373)
                     /gene="trmJ"
                     /locus_tag="PXA71_000871"
     CDS             complement(19657..20373)
                     /gene="trmJ"
                     /locus_tag="PXA71_000871"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HDL5105001.1"
                     /translation="MQILNQIQIILVETSLPANIGSAARAMKTMGLTHLRLVAPKQPL
                     DEQAEALAAGAKDVLDNAQCYATFDEAIADCQLVIGTSARLRHLQNTLIEPRDCGELV
                     VNRTNLGKVAIVFGRERVGLTNEELLKCQYHLNFPTNPDYGSLNLAMAVQLASYEIRM
                     AYLQNSGEKQPLAADKDYPTAQALEHFFAHTERLYTELGFIRNDSVMLKLRRLYQRAE
                     LETNELNLLRGMLTAVEKAN"
     gene            20553..22091
                     /gene="pntA"
                     /locus_tag="PXA71_000872"
     CDS             20553..22091
                     /gene="pntA"
                     /locus_tag="PXA71_000872"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HDL5105002.1"
                     /translation="MLIGVPRELLDGETRVAATPKTVEQIKKLGFDVLVEQDAGFKAS
                     FEDNTFLNAGANIGTQQEVWNADIIFKVNAPTEAEIELIKEGVTLVSFIWPAQNPQLM
                     EKLQSKKINVLAMDAVPRISRAQALDALSSMANISGYRAVIEAANAFGSFFTGQITAA
                     GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDSRPEVKEQVKSMGADFLEIDFEE
                     EGGSGDGYAKVMSEEFNRRAMALYAEQAKEVDIIITTAAIPGKPAPRLITKEMVDSMK
                     PGSVIVDLAAATGGNCEYTKAGEIVVTDNQVKVIGYTDFPARLPTQSSQLYGTNLVNL
                     LKLLAPNKDGQIEINFDDVVLRGVTVVRDGELTWPAPPIQVSAQLQKQAAAPQAVKKE
                     EKPADPRVKYGVMAAAGVLFLWLASVAPAAFLSHFTVFVLACVVGYYVVWNVSHALHT
                     PLMAVTNAISGIIIVGAVLQIAQPTGNFFIDILAFIAILVASINIFGGFKVTQRMLAM
                     FRKG"
     gene            22106..23551
                     /gene="pntB"
                     /locus_tag="PXA71_000873"
     CDS             22106..23551
                     /gene="pntB"
                     /locus_tag="PXA71_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HDL5105003.1"
                     /translation="MSFGFVTAAYIIAAILFIMSLAGLSKHETAKAGCWYGIVGMAIA
                     LVATIFGPQSHGTIWILIAMAIGGFIGVKKALKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYGLHTNALMPANLDETAQAAFLAEQATLANIHNVEVFLGIFIGAVTFSGSLVAFG
                     KLSGKLFGRKVSSAALNIPHKHKWNLAAIIVSVFLMIVFLNNPHNIFPVLIMTIIALV
                     FGWHLVSSIGGADMPVVVSMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYI
                     MCKAMNRSFISVIAGGFGNEVQSGKGDEEYGEHRETKAEEVAEMLKNASSVIITPGYG
                     MAVAQAQYPVAEITAKLREKGVNVRFGIHPVAGRLPGHMNVLLAEAKVPYDVVLEMDE
                     INDDFEETDVVLVIGANDTVNPAALDDPSSPIAGMPVLEVWKAQNVIVFKRSMAVGYA
                     GVQNPLFFKENTQMLFGDAKERVDDILRALN"
     gene            complement(23618..24544)
                     /locus_tag="PXA71_000874"
     CDS             complement(23618..24544)
                     /locus_tag="PXA71_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5105004.1"
                     /translation="MKPIFLEIRHLRTLIALKESGSVSLAAKRVHLTQSALSHQIKLL
                     EEQYDLTLFERKSSPIRFTPAGERLIKLAYDILPKVIEAELDLARVKQGEVGEVRVAV
                     ECHTCFDWLMPAMDTFRQHWPLVELDIVSGFHTDTVGLLLSHRADLAIVAEEEDSAGI
                     IYKPLFSYEMVAICSKDHPLATKDVWEAEDFKDETLITYPVPDDMLDLLRKILGPAGI
                     KVTRRNSELTIAIIQLVASRRGIAALPYWAVKPYLDRGYVVARKITQQGLYSTLYGAI
                     READATLAYLDDFHDTVKSQSFATLPGLMVLE"
     gene            complement(24654..25769)
                     /gene="asd"
                     /locus_tag="PXA71_000875"
     CDS             complement(24654..25769)
                     /gene="asd"
                     /locus_tag="PXA71_000875"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDL5105005.1"
                     /translation="MQNVGFIGWRGMVGSVLMDRMVEENNFANINPVFFTTSQAGQKA
                     PVFGGKDAGELKNAFDIEELKKLDIIVTCQGGDYTNEVYPKLKETGWNGYWIDAASAL
                     RMKDDAIIVLDPVNQHVISEGLKNGIKTFVGGNCTVSLMLMAIGGLFEKDLVEWVSVA
                     TYQAASGAGAKNMRELLSQMGELEDSVKAELANPASSILDIERKVTAKMRAEDFPTEN
                     FGAALGGSLIPWIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVDGLCVRIGALRC
                     HSQAFTIKLKKDIPLAEIEQIIAAHNEWVKVIPNDKETTLRELTPAKVTGTLSVPVGR
                     LRKLAMGGEYLAAFTVGDQLLWGAAEPVRRILVQLTQ"
BASE COUNT         7374 a         5160 c         5803 g         7686 t
ORIGIN      
        1 aataaatgcg tttattaatt actttttttg ccctattact cggctttttc caatatagct
       61 tttggtttgg aaaaaatggt tggagtgatt atcaagaagt gcaagaagaa attgctttat
      121 taaaagtaga aaacacaaag cttacttcac gcaataaact aattgaagcc gaaatttacg
      181 atttaaagaa cggcgtagat gcacttgaag agagagcaag acttgaacga gaaatggtaa
      241 aagagaacga gatgttctac cgaattgtac caaaaaacaa ataatacata attgatatat
      301 tatgaagcga aaaattattg cagtaattcc ggcgtcagga gttggtagcc ggatgcaagc
      361 agaaaaacca aaacaatatt tacaattaaa gggtaagact atcttagagc atacagtgtc
      421 tatttttctt gaacaccctc atgttgaaaa agtgattgta gcggtggcaa gaaaagaccc
      481 tttttattcc acattggaac tcctaaaatc ccctaagatc caacttgttt ttggaggaga
      541 aacgagagca gattcagtgc taaatgcctt acaggaaatc aacactgaaa atgcttgggc
      601 attagttcac gatgcggctc gcccttgcct caagcggtca gatttagata aacttttgca
      661 aattaacgat ccgcaaggtg gcattctcgc cattccagcg gtagatacga tgaaaagagc
      721 aaacggcacg aaaatcgcac acacagaaga tcgctcaacc ttatggcacg ctttaacccc
      781 acaatttttt cctgctcaag cattaaaaca agcattatcc tctgcttttg ccaataagct
      841 tcaggtaaca gacgaagcat ctgcaatgga gcttgcaggc taccagccac aattggtttc
      901 aggtagaagt gataatatca aaatcactcg ccctgaagat ttagccttag cggaatttta
      961 ccttacacat aatttggaga actaaaatga tacgtattgg acacggtttt gatgttcacg
     1021 cttttggcga agatagacca ctgatgattg ctggggttga agtgccttat catacaggct
     1081 tcattgcgca tagtgacgga gatgtagcgc tgcacgcttt aacagatgcg ttgcttggcg
     1141 cagcagcttt aggtgatatt ggcaaattat tccctgatac tgatatgcaa tacaaaaatg
     1201 ccgatagtcg tggtttgttg attgaagctt accgacaagt gcaagaacag ggctatcaag
     1261 tcggtaacgt cgatgtaacc attattgctc aagctccgaa gatgcgaccg catattgata
     1321 aaatgagaca ggtgatcgca gacgatctac aatgcgatat atcacaagtg aatgtaaaag
     1381 ccactacaac agaaaaatta gggtttaccg ggcgaggtga aggcatagct tgtgaagccg
     1441 tagcattgtt actaaaaagg gcatagctta gagaagtgag gaagcggtct tattttcatt
     1501 agcgttttgt gcgtttagcg aaaaatacgc aatttttttg agaaatatga ccgcttgtat
     1561 tgttttaaat tgggcggaaa ctaccagctt cctccagcgc ctccaccgcc tgatgaacca
     1621 ccaccgaagc tgtcgccact gcctctgctt ccgccaaaac caccaccgaa gcctccgcca
     1681 aatccacctg agcctcgatc aaagccacct ccgagaccac cgccaaagcc cccacctctg
     1741 cgttggcttt ctcttagtat ttgtcctagt tgatccattg agctgggact aatataggta
     1801 ctgtttcctc gtgggcggaa aattaggaaa atcacaatgc cggcaaacaa gaaaaagagt
     1861 aagccgtcta tgtcatcaaa ttcttgcatt tcttcgccat aacttgcata aggggcatat
     1921 tccccgttaa tggctgccat aatggcggat aagccatggg cgataccggc tgcatattgc
     1981 tcttgtttga agaatggcgt gatgtcattg cggataatgc tcgatgcaat cgcatcaggt
     2041 aacgctcctt caagcccacg tccggtggca ataaagagtt tgcgatcatt tttggcaatt
     2101 aataacaata taccattgtt ctcgttattt ttgctccgtc cgattcccca tttgttaaac
     2161 agggtatgag cataggttga aactgcctcg ccttccgtgc ttggaataat caccacggca
     2221 atttgcgaac ttgtcttggc acagttagca attaaggcat cttctaatgt ccgccattct
     2281 tgttggctca aggtgttttt ggtgtagtcc gtaatataat aaaacggatt aggcggctct
     2341 gggtaggtca ccgctgtggc atttaggcta aacagagcca agcacaccaa taacaagcgg
     2401 ttgaaaatag atagaaattt gcaaagggat ttcatcattt gactaccacc tcgtttgaaa
     2461 gctcgttttt atcatcagcc tgataaggga aatggtgagc gagcggagct tccaccattt
     2521 tgattgcatc acaaatggct tgggtgtaat cgccttgttg gcagtccaaa cacattgtgg
     2581 catagatttt ttgccaaaaa tcgttatcga ctttttgatg aatgccttca tcgccaataa
     2641 tcgcagcgta gtgaggcttg aatgaaaggt agatcaacac accgttatgt tcagccgttt
     2701 cacgcatttt taattcatcg aaaagctcac ttgctcgcaa catagcggcg ttgtcggttt
     2761 tgccgatttt ggcttttcgt tccaccacca cacgcaattc ggcagaggtt ttttgctcta
     2821 aatcggcaat tgcttgttca atgcgttgcg tatctatcgg taatttgttg gagagaaaag
     2881 aaaataatcc catttgttcc ccttaaaaat aaagcaataa gcaccggatt tgaaagagct
     2941 tattgctttt aatatgaata aattgaaact aaaattagtt gaagtttacg gttggtgctt
     3001 tatcagaacc tgcttcagat ttaaattgcg gttttgcttt aaagcccata atcattgccg
     3061 ctaatttagt cgggaattca cgcacttgct tgttgtactc tttcactttt tcgttaaagt
     3121 tattgcgttc aacgttaatg cggttttccg taccttctaa ttgagcttgt agatttaaaa
     3181 acgcttcgtg ggcttttaat tcagggtatt tctcaactga aaccaataag cgtgaaagag
     3241 cagagtttac accttgttgg gcttcttgga atttagccat ttgctcttca gttgcattgc
     3301 ttgggtcaat ggttaccgca gttgcttttg cacgagcttc aatcacagag gttaaagttt
     3361 ctttctcaaa gttagcctga ccttttacgg tattcactaa gtttggaatt aaatccgcac
     3421 ggcgttggta agccgattca acatttcccc atacggagtt gatgtcttct tctgcacgca
     3481 ttaaatcgtt gtattttgtt aaagaataac cgccaacagc aagcatggcg atcagtaaaa
     3541 tccaaaaaat ctttttcatt atgaagtcct ataatataaa taaaagagtg aaaaattggg
     3601 agcattgtat cgggaaaaat cgaatatagc tagcttactt acaaattttt tcatactatg
     3661 gggcgtagat aagatttgta aatttttgtt caaagtcaac cgcttgttgt ttgattgttg
     3721 ataagaggaa agccaaatgc tcaaaggaat tttagcttcg cttgcagcca atgtgctgtt
     3781 tggagcagtt tactattttg cgatattgct tcgcccgtta gagggagagg cgatgttcgg
     3841 ctttcggata gtggtagtca ttccgtttat tttgctggcg attatattgt ttaaacagca
     3901 atcggctttt gcggatcttt tgcaaaaaat tcgacaaaat ccaccgcttg tattggtcat
     3961 tttgctcctt gctctcaaca ccggcgtgca gctttggctg tttttatggg ctcctaatca
     4021 cgggcaggcg ttgcaggtgt cgtttggtta cttgctttta ccgattgtgg cggtggctct
     4081 aggaaaaatg gtgtttaaag aacattttac ccgcctgaaa tggctttctc tacttttcgc
     4141 agtcatcggt gttggcagta gtttgttttt taacagcacg atttcgtggg cgacttgggt
     4201 agctgggttg ggttatccgc tttatattac ccttcgccgt tattttcaaa tcaacacgtt
     4261 agctactttt tttgtggagt tgttactggt attacccgtt gcactttatt atctcagcca
     4321 agtggaaatg acgccaatag tggcagaaaa tccgcaaatt tatttctacc tcggattgct
     4381 ggggctggta agtggcagtg cttttattct ttatatcctc tcgagcaatt tattaccgat
     4441 taatgtatta ggtttactgg gctatgttga accgttggtg atgttgctga tttcttttgc
     4501 catcggcgaa aaactcgatg ccaattccta tattttgatg gtctgtttgc tggtttcgat
     4561 tggattattg agttgggata gttttcgtag caaggtgtga taattaagga aaaataaatc
     4621 gcttgtagag caagcggttt aaagattatt tgaccggttt caatagacct gctttttttg
     4681 ctcgctgata ggcttgctta aaagcgatta agccttcttg ctttaaacga acggaaactg
     4741 gacgttgttg attcatttta gatttccttt tggcgtaatt aaaatgaaac aatcttgatt
     4801 aacgcccaag ggataaacca cttggaaaga ttgcataaaa tcacatcgtg gcacacacat
     4861 acgctgatac attcggttaa gtgaatctct ctcggcaatg aagagatagc tttctggtgt
     4921 aaaacgtaca taatgctcaa ataataaacg ctcaagggtt tcttgtaaag caattatttc
     4981 tttacgtttg aactgatgat tcgctgcggg ggcataaatg tcaatattag aaccgctatt
     5041 ttctagatgc tctttcgcca taaatttgat tgtgcaacag gaataggtgt ttatatagtt
     5101 tgtgatatct ttgcctaatg cggacaaagt cgatataaca tcggcatctg agcagaaatt
     5161 aatgataaat gcgacattag caatagtaaa ttcactgtat tgataagaaa ttccactatc
     5221 aggatcggta aattcaataa actgcatagt atctcctcgt agcaaaatca taacgagttg
     5281 atattattcg taaagtgatg aaaatgattt tttcgatctc gatcgcaaaa ataatatttt
     5341 agacttgata tttcgatgaa atagaattca gtaagtacca atatgatata aaaacggagc
     5401 gtttcgctcc gtttttgttt gtatttgtgt ttgtgcttta ttctgctttt tgtttgatag
     5461 cggcatagac tacgccggtg actaatgagc cgatggcaat agcagctaag tacattaacg
     5521 gttgtgaaac gaatggaatc acgaataaac cgccgtgtgg ggcttgtagg gtaatgccta
     5581 gtgccattga aattgcaccg gcggttgcac cgcctaagat tgagctggca attacacgca
     5641 cagggtctgc cgccacgaac ggtaatgccc cttctgaaat aaagcataaa cctaacacga
     5701 atgaagcttt acctgcatca cgttggttgg tgttgaattt gctacgagca atcagggtcg
     5761 caatcgccat accaattggt ggaaccatac ctgccgccat caccgctgcc attggcatat
     5821 attgttgtga agcaattaaa cccacaccaa aggtataagc cgctttattc accggaccac
     5881 ccatatcggt acacatcatc gcaccgagaa taatacctaa aataattgca ttggtttgcc
     5941 ccattgtgtt taaccattcc actaaggcat ccattaatgc tttcaccggt gggttgatga
     6001 cataaatcat cagtaagccg acaatcgctg agcctaagag tggtaaaatc aaaataggtt
     6061 taagtgaggt taaacttgcc ggtagctgaa tcgcaccatt taagaatttt acggtataac
     6121 cggctaagaa accggctacg ataccaccta aaatccctgc tcctgcggtg gtagcaagca
     6181 taccgccgat aagaccgaca gctaaccccg gacggtctgc aattgagaac gctacatagc
     6241 ctgcgaatac cgcaatcatt aagtggaatg ccgcaccgcc accaatatcc attaaggctt
     6301 tcggcaagcc gcctgcgatg gtttcatctt taaaggcttc aattccgaac ataaaggaaa
     6361 tagcgatgag caagccacct gctaccacca gcggtaacat atgtgataca ccggtcatca
     6421 agtgtttata taaccctttt ttctcagaag ttggagcttc agcattatcc gcttttgcca
     6481 caccaccttc gtaaattttc gcttgagcaa aggctttttc aaattcttga gtggttttct
     6541 tcaatgctaa accggttgag gtgcgataca tcggcttgcc tttgaatttt tccaaatcga
     6601 catcaatatc ggcagctaca aagactaaat ctgccgctgc gacttcttcg gcggaaattg
     6661 gatttcctgc tcctacttga ccacgggttt caaccttgat gttccaaccc tgtgctttgg
     6721 cataattttc gattgcttcc gcagacataa aagtatgagc cacgccagtt gggcaagcgg
     6781 taacagcaac gatatttttc acaccagatg aaaccgctga aaccgcagtg gttgcggtag
     6841 catttgcaaa agtttgtgca ttttcgaccg cttgtttgag actggcttca ggttgagcaa
     6901 aggcttgttc taagtccaaa attgcccctt gcttgccggc agcttcttgt ggaattgcgt
     6961 tatcgaataa caccacaaaa tcagcttggt ttgccgccac aacattgtgt ccttgttgct
     7021 tggcagcggc agataacatt tcattcacta agaaacggcg tgcgttgcct agtgtttgag
     7081 gaaatacaaa agaaatattc atattggttt gttcctttga ttgaggttta atgattttct
     7141 gaaatcacgg taatgtcggt ttgtttaata atatcgtcta acgccgcacg gtctgcaatc
     7201 ccaacgttac tttgaacaac agctagagca gaagtagctg aggcaaaacg caaggtctgc
     7261 tctttgctcc aaccttgaga taagccgtag atcaagctgg caaccattga atcaccagca
     7321 cctacagtgc taactacatt ttcgcaacgt ggtgggcggg cttgtaacac gccttcgtga
     7381 tttagccaaa gagagccttg ttcgcccatt gatataatta cattttcaat accacgggaa
     7441 cgtaattgtt tagctgcact aataatctct tcgattgagt tgagtgaatg cccgaccagc
     7501 acttccagct ctcggcggtt tggttttact aaccaagggt gagcggttaa gccggcggtg
     7561 agagccgcat tgctggtatc taacaccact tttaagcctt ggcggtgtaa agattccaac
     7621 caagaagcaa atttttccgg cgttacgcca cgagggagag atccacacac tgcaactaag
     7681 tcaaatttgc tttcccactg atgagataat gtgacgaatt tttcccaatc gctttccgaa
     7741 atttcaaagc cgagaaagtt cagatcagtt acatcagcct cggtttcagt gattttgaca
     7801 ttaatgcggg ttttaccgtt aatacggtaa aattcatcag ccaaatcatt gtgtttaaag
     7861 gcatttacga aatcgccttg attttcttcg cctaaaaagc cggtaaccga aagttttgtg
     7921 cctaagtcag ctaaaacttt agcaacgtta atacctttgc cggcagggta taaaccaagg
     7981 gtttctacgg tgttcacttc gccgatttca atacgttgaa gtttgccgac taaatcaaag
     8041 gcagggttga gggtaacggt tgcaatacgc ataatgattc ctcgcttatt cgcctaaacc
     8101 tgcttcaatc gcagcaccga ttgccgcaag tgctacttcg gcatcatcac cgcttgccac
     8161 aaagcgtagc gtcgtgcctt tggttacgcc aagggcaaca attttcatta agcttttggc
     8221 acttacaagc ggtgaatttt tatcaacatt ttgcacttca attttggcgt tgaatttttt
     8281 cacttcattc accaacaccg cacttgggcg agcgtgtaaa ccgtgttcgt ttttaattac
     8341 aaaagttgct tctttcgtat tggcatcgac agcagtcgca gtttcttccg caggaattgc
     8401 tgaaacagca atgctttcaa tcgtatctgc caccgccggt acgaatgaaa cactttcgcc
     8461 taagccgtta ataattgctt gttgtaatgc ctcaatcgct tgttgggcgt cttctccctc
     8521 tgccacaaag cgtaaacgat gcccttggct tgcccctagt gctactactt tcattgcact
     8581 tttcgcactt gccggtgcag tgttgcggtc taaattttca acgctgattt ttgaggagaa
     8641 cggtttcacc gtttgtacta acaccgcagc cgggcgggcg tgtaagccgt tgtcgttacg
     8701 aatggtgaat gtgccaacca cttggttgcc actcgcttcg acattggtta caggggttga
     8761 agctacgctt tcgcctttta ataaaccaag catttgctcc gcagagaaat gagcaaactg
     8821 gcttcttact tctggtttta ataattgagt taatagtggc tgtagagcat tgtcggtttc
     8881 tgccacagtt agtagggttt gaccttgcgt attacgggca atagcgatac cgttagcttg
     8941 gttgcctttg gcggaatcca ccacaaatag attattgcct aaatgtaacg ctttgttggc
     9001 aaccacatcg ctgatgaatg cttgggaaac atagccttgc tcttgtagtt ttgcggcgtt
     9061 aatggctgat aaagtgatag ggcttgaaga ttcgatattc agagaaatca gctcttgaga
     9121 taaggcagga aggtttttct taccgcttaa tacggcaata aattcatcta aattttgcgt
     9181 tttcgctaat gtggcagcag cctcttcatc acttaataca gtggtgagtt gacggagtaa
     9241 ggttaagtgt tcgtccgatt tagccgcaat cccgataact acataagcag tgttgccttc
     9301 gccccattcc acgccttgcg gaagttggat aatttgcacg ccggtttctt tgactaaatc
     9361 acgggtatca agcgtgccgt ggggaatagc aattccgtta cctaaaaaag tagaggtttg
     9421 ggtttcacga ttaagcatac cgacttcata gccggctgct acattgccct tggcgactaa
     9481 ttcggcggca acaaaacgga taacttcttc tttgttgctt gctgaaccat ttaaacggat
     9541 gttttttgcc gataaattaa gcattttagc tccttggatt taaagttgat ttttaaactg
     9601 taatgttatg gttagtttac tctatatttt gctaaaccgt tatagccaac taaaaatatc
     9661 cataaaaatg tttcaaaatg tgatctatgt cacaaaattt aaggtttgat gatttaaact
     9721 aaagattaaa acgattttat tttgtgattt agctcaaaaa atggcgtaaa tccacttctt
     9781 ttatttctat ttagtgatag agtgagaact attgaaattt aagtattaaa cgctttaagc
     9841 aaggagtgcc gatgcaagac tatacttatt ctgaaaaaga tgcttttttt gttgagcgac
     9901 tttcttcggg ttcttgtaat gatcctttct cctacctagg tattcaccct agcaataacg
     9961 gcgttattat tagggtattt cttccttctg ccatagcttg ccaagtgatc gatttaaacg
    10021 gaaagcctgt gtcatcaatg ctaaaaattg atgatagagg cttttttatt gcagagctga
    10081 ttggtaaaaa aacagatttt tcttaccgct tgttggtgga ataccctgat tcaacggtgg
    10141 atatagaaga cccttaccgt tttaaaaccc atattcaaga gcttgataat tggttgtttg
    10201 cggaaggaaa acaacttcgc ccgtacgaaa aattaggcgc acatttagtc acacaaaatg
    10261 aagttggggg tgtgcatttt agcgtctggg cgccgaacgc tcagcgggtt tccgtggttg
    10321 gggatttcaa ccactggaac ggcttggtac attcaatgcg attccacccc gattccggta
    10381 tttgggatat tttcctgccg aatgtgaaaa aaggggagtg ctataaattt gaagtgttgg
    10441 atcgaaacgg cgtgctacgg ttgaaatccg acccttacgc ctttgcctcc caattccgcc
    10501 cagaaaccgc atctattgtt tccggcttgc caagcattgt gccagccgag aaaacctgcc
    10561 gtaatgcgaa tgctcccgat aaaccgattt ccatttatga agtgcattta ggctcttggc
    10621 gacgcaacat tgaaaacaat tattggctta gctatgaaga gcttgccgat gaactcattc
    10681 cttatgtgaa agatatgggc tttacccata ttgaattgct gcctatttcc gaatttccgt
    10741 ttgatggctc ttggggttat caaaccaccg gtatttattc gccaaccagc cgttttggta
    10801 cgcctgaggg cttgagttac tttatccaaa aagctcacga taaaggcatt ggtgtgattc
    10861 ttgactgggt agtggggcat tttccggtag atgaacacgg cttggtttat tttgatggaa
    10921 cgcatttata cgaacattcc gatccgaaag agggctacca caaagattgg aataccttaa
    10981 tttttagcta cggcagaaat gaggtgagca attatttgtc tggtaatgca ctttattgga
    11041 ttgagcgttt tgggattgat gcgttgcggg tggatgcggt ggcgtcaatg atttatcgtg
    11101 attactcacg ttcagacggc gagtggattc caaataaata tggcggacgt gagaacttag
    11161 aggcaatcga cttcttacgc cacaccaata atattttgag agacgaaagc caaggcggtg
    11221 cgagcattgc agaggagtcc acttcttttg ccggagtgtc tcactcaact gaaagaggcg
    11281 gtttgggctt taattataaa tggaatatgg gctggatgaa cgacacttta cgctatatgc
    11341 aaaaagatcc aatttaccgc cgttatcacc acaatttaat gacttttggt atgacctacc
    11401 aatacagcga acagtttgtg ttaccgcttt cacacgatga agttgttcac ggcaaaggtt
    11461 cattgctgaa taaaatgccg ggggattgct ggcaaaaatt tgcgaactta cgagcctatt
    11521 atggctatat gtggggctat ccgggcaaaa aattgctctt tatgggcaac gagtttgctc
    11581 aaggtaaaga gtggaatttt gccgagagct tagattggta tttactcggg gaagaagggg
    11641 gcgaatggca taagggcgta ttgggttggg taaaagccct taaccattta tacacccaaa
    11701 cccctgcact gtttgagcaa gattacaatc ctgaaggttt tgagtggtta gtggtggacg
    11761 atcacgataa ttcggtgttt gcttttgagc gtaaagccaa aaatggcgat tcggtgattg
    11821 tggtgagtaa tttcaccccg attgtgcgtg aaaattaccg ttttggggtg aatgaattgg
    11881 cagaatatca ggaaattctc aattctgatt tagcttgtta ttgcggtagt aatgtcagca
    11941 atgcaaaccg atttgccagc gagttaattg catcgcacgg taaagcctac tccttgagca
    12001 ttactttgcc accgctatcg actatcttcc tcaaaagagc cgcagacaaa aaaacaaaac
    12061 aaaacaaaac ataacttaaa gaaacataaa aaataatatg cactatttta gaggtaagcc
    12121 ttttccttta ggcaataaac ttgatagaca agcgggtgaa tttggcacaa attttgccat
    12181 tgtttcgcaa aatgcaaccg ctattgagtt atgtcttttt gatgaaaatc accacgaaac
    12241 ccgtattccg atgttttctt ccggagatac ttggcacatt tttgtagcag gtgtacaagc
    12301 agggacaaaa tatggctaca gggtgaaagg catacaagat gaacaagccg gtttgttatt
    12361 taatccgcaa aaattattga ctgatcctta cgctaaagcg attgaaggga agccggattt
    12421 aagtagtgca gaggcagccg cttggtataa atggaacgat gaacgggata atgcctctct
    12481 tgcacctaag tctatcgtga ttgatgagca ttttgattgg gaaaatgata gccagttatt
    12541 cactccttgg gcagagacta ttatttatga aatgcaggtg aaaggtttta gtcagcggaa
    12601 ctttcagatt ccaagcgaca ttcgaggcac ttttgccggt ttggctcacc ctgtttcgat
    12661 agactattta aaaaccttag gaatcaccgc agtagaactt ctacccgtta cttaccatat
    12721 tgatgaaacc catttgcaga aacaagggct tgtgaattat tggggctata atgtattagg
    12781 taattttgct attgatccga atttagcagc agataagcaa aatcctctta aagagtttaa
    12841 acagctcgta aaaacattac atcaagcaca tatcgaagtg attatggata ttgtgtttaa
    12901 ccacacagct gagagtgata aaaacgggcc gatgctaagt tttagaggca ttgacaatac
    12961 agcttattgg ctagataaac agggcgaata cgaaaattgg actggctgtg gtaatacctt
    13021 aaatttgagc aatccttata tactctgctg ggcaatcgat tgcttaatct attgggtgga
    13081 ggagtgccat attgatggat tccgctttga tcttgcctca attctaggta gaacaccgag
    13141 tttttctgaa aaagcagatt ttttcacagc acttaaaagc cattctaaat taacacatat
    13201 taagttgatt gctgagcctt gggatattgg tgtagaaggt tatcaattag ggcaattccc
    13261 tgagcctttt tatcagtgga atgattgtta tcgtgatgat atacgccgtt tttggttaca
    13321 aaaccaaggt gattgggggc ttttggcacg gcgattggca ggaagtgatg atgtgtttac
    13381 taaatattcc gtttcaaaaa gtatcaattt tattacggca cacgatgggt ttacgttaca
    13441 agatctcacc agctatcagc aaaaacataa ttgggcaaat ggtgaacaaa accgagacgg
    13501 gcataatagt aactacagca ataaccacgg tgttgaaggg cagacagcag atgaattggt
    13561 aaaaaaacag agagaaatca ccgcttgtag tttgcttgct acgctctttt tatcggctgg
    13621 tgttccaatg cttttagccg gtgatgaaat cggacatagt caacaaggta acaataatag
    13681 ttattgccaa gataatgaga tcacttggct agattgggaa aatatgaatc acacacggct
    13741 ggattatgtt cgtagtttaa tccggttgcg taaaaaaatc gctttgcttt ccaagcagaa
    13801 taattggtgg caagaggatt cggtacaatg gttgaatcct tctgctcagc taatgaatat
    13861 tgacgattgg cataatcaac ataatgggct tgtcgtttta ttacaggaag aatggctgct
    13921 tttattcaat gctaatcgac aacctcaacc gtttttactg ccacaaggca actggaaagt
    13981 tgtgttggag caggctcaag gtattttgat gacagacacg caagcggtta cgctcaataa
    14041 tatgggtgta tgcgtacttc aaaaaagtga tgtaatgttc gctaataaat tggagacaca
    14101 atatgcttaa ccaagaatca acggctcttg ttgcaagaca agatttaacc aacgatacct
    14161 tagtattaat tcttgcagga ggacgaggtt ctcgcctata cgaattaacc gataaacgtg
    14221 caaaaccggc agtctatttc ggtggtagcc gccgtattat tgattttgcg ttatcaaatt
    14281 gtattaactc gaatttatta aaaatcgggg tgattaccca atatgcagca cactctttgt
    14341 tgcgccattt acaacgtggt tggtcatttt taccttatga acgtaaccaa tatattgata
    14401 tgttaccggc acgccaacag ctagatgaaa acacttggta tcgtggcaca gcggatgcgg
    14461 tgtatcaaaa tatggcgatg atgaaatcgc actatagacc aaaatatgtg gtgattttag
    14521 caggggatca tatctataaa atggactaca ctcaaatgct gaaagatcac gtcgatcaag
    14581 gtgcaaaatg tactgtaggt tgtatcgaag tgcctcgctc gcaagcaaca gagtttgggg
    14641 taatggcggt gaatgaaaag ctgaaagtga aagagttcgt cgaaaaacca gctgatccac
    14701 ctgcaatgcc gggaaaaccg gattcctcgc tagcatcaat ggggatttat gtatttaatg
    14761 cagattatct atatgaaatg ctggaaaaag aagcctctac accgggaacc tcacatgatt
    14821 tcggtaaaga tattattcca aaagcagtag agcaaggtgt gctatatgcc cacccatttg
    14881 aacgttcttg taaagggcgt aatgccagtg gggcaattta ctggcgagat gtcggtacga
    14941 ttgacagcta ctgggctgcc catatggatt tagtttctga agatccggaa ttagatttat
    15001 atgatgaatc ttggccgatt cacggtcgtc cgcaacaaac tgcaccggca cgttttttct
    15061 ataatcgtgc gcgtgccaga accctagata actcactgat tgcgggtggt tgtgtgatta
    15121 ccgatgcgga aatcagtaat tcggtcttat ttaaccgtgt tcacgttgaa gcggagtcgg
    15181 tgattgaaca cacagtgatt ttaccgcagg tgactatcgg taaaaattgc gtaattaagc
    15241 gcgctgtgat tgacagacat tgtgtaattc ctgatggctt agaaattggt gtaaatgccg
    15301 aagaagatgc gaaacgtttt cgtgtcagca aaaatggcat tgtattagtg acacagtcaa
    15361 tgttagataa attagcggga aaagaagcta attcggatat taaatataca atttagtaag
    15421 agatgatata atgcttcgag tttgtcattt gaggtcgcaa gctcgaagta ttgttatgat
    15481 taaagcgctt caagcggtct tatttttcaa ctattttaca catagaaaac ggttaaaaat
    15541 gaaagtttta catatttgct ctgaaatgta ccctttaatt aaaacaggcg gtttagctga
    15601 tgtaatgggg gcattgccat ttgcgcaaca gcaagctggt aatgatgtca gagtgttaat
    15661 tccttattac ccgaaagtcg cgcaaacttt aggggaaacg gtagaagttg ctactatcgg
    15721 cacttttgcc ggaacagtct ctgttcgatt tgcttatttt aatggcttag gcgtttacgt
    15781 tatcgatgcg cctcatttat ttatgcgtga tggtaaccct taccacgaca gcaattatca
    15841 agactatccg gataactata aacgctttgc tttattaggt tacattgggg cgcaattagc
    15901 ccaaggtttg gatcattggt ggggaaccgc tcaagtttta cacgcacacg attggcaagc
    15961 agggcttgct tgtgcatatc ttaaaagttg gggaagcaat gtaaaaacgc tcttcactat
    16021 tcataatatt gcctatatcg ggcgctttaa tgccttccat ttagcagagc ttggcttacc
    16081 ttgggaattt ttccacgccg aaggcttaga attttacggt gaaatttctt acctcaaagc
    16141 aggtttgtat tttgctgatc gcattactac cgttagcccg acctatgctc gtgaaattac
    16201 tgaggaaatt gccggtgcag gcttgcatgg tttactggca acccgtcaat atcaaggtag
    16261 attgcgtggc attttaaacg gggtcgatgc tgaggtgtgg aatccggaaa cggatacaca
    16321 tattgtggtg aattatcgtg cgaactatat gcacggtaaa gccaaaaata aagcggaact
    16381 ccaacgaatt tttggtttgc cagaagacaa agaagcatta ttgatggtaa tggtgactcg
    16441 tttaactgag cagaaggggg cagatttctt actcgccaat atagatacct taatgcaaca
    16501 taaggtacag attattgtat tgggaagtgg atcgccagat ttagaaaatg cgctacgtta
    16561 tttccaacac aaatacccga accaaattgg ggtgaaaatc ggttatgacg aggctttatc
    16621 gcaccaaatt attgcaggtg gtgatctgat tctagtacca agccgttttg agccgtgcgg
    16681 attaactcaa ctttatgggc tgaaatatgg cactttaccg ctggttcgcc gtaccggtgg
    16741 cttagctgat acggtggtag atagccataa agagagcatt gaaaaccgca gtgccaccgg
    16801 atttgtattt gattacccag atgcacctgc gtttttagag gcagctatgc gggcaatcag
    16861 cttatggcag aaacaaaaat tgtggtcgag cgttcgccag aatgcccttg ctcaagattt
    16921 tggttgggca aaagtggcag aacagtacca aaatttatac cacgaaatta tttaatttgt
    16981 attcacaaca tcatttcaag cggtcgaatt tgcggatttt tttgtaaaaa cgaccgcttg
    17041 caatattaaa aattaggaga atttactcaa tgagcaggca gtcattaagc ccagaaatga
    17101 tcaaaaatgt taaaaatgcg attttgcaca aaatggtgtt cgctttaggg gtcgaacccc
    17161 gtgatgccag taagcgtaac tggctcaatg caaccttacg tgtagtgcgt gatttatcta
    17221 ccgaagattg gttacaaacc cgccgtagcc aggttgcaaa tggtagccgc cgtgtttatt
    17281 acctttcaat ggaattttta atggggcgta cgttcagtaa cgcaatgatt tctgaaggtg
    17341 tgtatgagct tattggcgct gcgttaaaag agttagggca agatctggaa gagattatca
    17401 atgaagaggg cgtccgggct taggtaacgg tggcttaggg cgtttagccg cctgctatat
    17461 ggacagcctt gccacaatga aaattccggc aatcggctac ggtattcaat atgaatacgg
    17521 tatgttccgc caagaaatcc gcaacgggga gcaaattgag caacctgatg aatggttaga
    17581 gaatgaattt gtgtggccat atctacgttc aagtaagcgt ttcccggtac gctttggcgg
    17641 taaaacttgg cgtgagggca aaaaagtagt atggcagccg gaagaagaaa ttaccgctca
    17701 agctcacgac caactgatcc cgggctttga gaccacctca actaacagct tacgtttatg
    17761 gtctgcacac gcatcgggta gagggtttgg cttatctgat tttaaccgtg gcgattattt
    17821 tgcagcaatg gttaaacaaa acagctcgga aaacgtctct cgtgtgcttt atccggacga
    17881 ttctacctat aacggtcgtg aattacgctt acgccaagag tatttccttt gctcggcatc
    17941 tgtacaagat attatccgcc gccacgaagc ggagttcggc tcttgtgtga atttagccga
    18001 caaagtggca actcacttaa atgacacaca cccaaccctt gcggtgcctg agttaatgcg
    18061 tattttaatt gacgaaaaag gctatggctg ggaacaagcg tgggcgatga ctcgtaaaat
    18121 tttcttctac accaatcaca ctttgatgag tgaagcgtta gaaacttggc cggtagaaat
    18181 gttagcccgt gtgctaccac gccatttaga gattattttc gacattaacg aatatttctt
    18241 agaggaagtg cgtagccaat tcccggaaga tcacgatttg atttctcgtg tttccttaat
    18301 tgatgaacaa ggcgatcgcc gtgtgcgtat ggcgtggctt gcggtagtcg cctcagcgaa
    18361 agtaaatggt gtggcgaaaa ttcactcgga tttaatggtt gaatctattt ttgccgattt
    18421 tgcccgtatt tacccaaatc gttttactaa tgtgactaat ggggtgacac ctcgccgctg
    18481 gatcaaaatt gccaacccag ggcttgctaa tattttagat aaatgtatcg gcaataagtg
    18541 gctgactgat ttaagtgaat tggaaaaatt caacgtgttt gttgatgatg ctgatgtgca
    18601 agcacaggtg gcagcggtga aagtagaaaa caaacgtcgc ttagccaaat atgtcgaaga
    18661 aactcaggga attaaactta atcctgaagc gatttttgat gtacaagtta agcgtattca
    18721 caagtataaa cgccagcaaa tgaacgtgtt gcatatcatc acgctttata accgcatctt
    18781 gaaaaacccg actgctgatt ggacacctcg tgtgtttatc ttcgcaggga aagcggcaag
    18841 tgcttattat gcggcgaaaa aagtgattcg tttgattaat gatgtggcaa atgtggtgaa
    18901 taatgaccct cgcattaatg atttaattaa ggtggtgttt attccgaact acggtgtttc
    18961 attagcacaa atgattattc cggcagctga tgtttcagag caaatttcct tagcgggtac
    19021 agaggcctcc ggaacctcta atatgaaatt tgccctcaat ggtgctttaa ccattggtac
    19081 attagacggt gcgaatgtcg aaattttaga tcacgttggt aaagagaaca tctttatttt
    19141 cggtaatgaa gtagagcagg tggaagagct tcgccacaac ggttactcac cgtatcacta
    19201 ctacgaaaaa gacagcgaat tgaatgaggc aatttcacaa attctaaacg gtaaattctc
    19261 accggaagat ccgtatcgct atcaagattt gatcttaaat tcaggtgact actaccaagc
    19321 ctgtgccgat tatcgtagct atgtggaggc tcaagaaaaa gtggctcaag cctatcgtaa
    19381 caagaaagct tggacacgtt cagccatcat caatattgcc aatatgggct atttctcctc
    19441 agaccgctcg gtgatggatt atgcgaaaaa tatttggcat atcgaaccga tgagcgaaga
    19501 acaattaaaa ggcgattcta caatgggcag tattattgaa agttcaaata aactgttgaa
    19561 tttaaaataa tgatttagag aaaacggtaa gagtaatctt accgtttttg ttttagtcag
    19621 ggattttgca aatttctact aaaaattaac cgcttgtcaa tttgccttct ccaccgccgt
    19681 gagcattccc ctcagtaaat tcagctcatt agtttccagt tcggcacgtt ggtataaacg
    19741 gcggagtttt agcatcactg aatcattgcg gataaagcct aattcggtat ataagcgttc
    19801 ggtgtgagca aagaaatgct ctaaggcttg agcggttggg taatccttat ctgctgcaag
    19861 cggttgtttt tcgccagaat tttgcaaata agccattcgg atttcataac ttgcgagctg
    19921 tactgccatt gccaaattca gagaaccata atcaggattg gttgggaaat tcaaatggta
    19981 ctggcatttc aataattctt cgttggttag ccccactcgc tcacgtccaa atacaatcgc
    20041 cactttgcca agattggttc gatttaccac taattcacca cagtctcttg gttcaatcag
    20101 ggtattttgc aaatggcgaa gtctggcact ggtgccgatc accagttggc aatcggcaat
    20161 ggcttcatcg aaagtggcgt agcattgagc gttatccaac acatcttttg ccccagcagc
    20221 aagggcttcg gcttgttcat caagcggttg ttttggggcg actaatcgca aatgggttaa
    20281 gcccatcgtt ttcattgctc gggctgcgga accgatattt gccgggagtg aagtttcaac
    20341 aagaatgatc tgaatttggt tgagaatctg cattggtttt gtttcttttt tgttaaattt
    20401 agcctgttaa tagtgtagca aaaatttagc ctgcttaaaa tttgaaaaaa tgggaaataa
    20461 tcggtttaat tgggcataat tttttaccta tttgttttat ttagtggtac atttagagcg
    20521 tttttaatca caacaaccat acaggagtct ttatgcttat tggtgtacca agagagctgt
    20581 tagacggtga aactcgagtg gcggcaacgc caaaaaccgt tgagcagatc aaaaaacttg
    20641 gctttgacgt acttgtggaa caagacgcag gttttaaagc cagttttgaa gataatacat
    20701 ttttaaatgc aggtgcaaat atcggcacac aacaagaagt ttggaatgca gacattattt
    20761 ttaaagtgaa tgcgccgaca gaagctgaaa ttgagttaat caaagaaggg gtaaccttag
    20821 tcagctttat ttggccggca caaaatccac aattgatgga aaaattgcag tctaagaaaa
    20881 ttaatgtgtt ggcaatggac gctgtgcctc gtatttcccg tgcccaagct ctcgatgctt
    20941 taagttcgat ggcaaatatt tcgggttacc gtgcggtgat cgaagcggca aacgcttttg
    21001 gtagcttctt tactgggcaa attaccgcag caggtaaagt accaccggca aaagtgttgg
    21061 taattggagc cggtgttgct ggcttggctg caatcggggc ggcaaatagc ctgggggcga
    21121 ttgtgcgtgc ctttgactct cgtcctgaag taaaagagca agttaaatca atgggggctg
    21181 atttcctcga aattgatttt gaagaagaag gtggctcagg tgacggctat gcgaaagtga
    21241 tgtcggaaga gtttaaccgt cgtgcaatgg cgttatatgc cgagcaagcc aaagaggtgg
    21301 atattattat taccaccgct gccattccgg gcaaacctgc tcctcgttta atcactaaag
    21361 agatggttga ttcaatgaaa ccgggttcag tgattgttga tttagccgct gcaaccggtg
    21421 gtaactgtga atacaccaaa gccggcgaga ttgtggtgac cgataatcaa gtgaaagtga
    21481 ttggctatac cgattttcct gcacgtttac caacgcaatc ttcgcaactt tatggtacta
    21541 acttggtgaa tttactcaaa ctgttagcac caaataaaga tggtcaaatt gagattaatt
    21601 ttgatgatgt agtgttgcgt ggcgtaacgg tggtgcgtga cggcgaatta acttggccgg
    21661 ctccgccgat tcaagtatct gcccaactgc aaaaacaagc agccgcacca caagcggtca
    21721 aaaaagagga aaaacctgca gaccctcgag tgaaatatgg cgtgatggca gcagcaggtg
    21781 tgctgttcct atggcttgca tctgtggctc cggcagcgtt tttatcgcat tttaccgtat
    21841 tcgttctcgc ttgtgtggta gggtattatg tggtttggaa cgtcagccac gcactacata
    21901 ccccattaat ggcggtaaca aatgcgattt cagggattat catcgtaggt gcggtattac
    21961 aaattgccca accgaccggt aatttcttta ttgatatttt ggcatttatt gcgattttgg
    22021 ttgccagcat caatattttt ggtggcttta aagtaacgca acgtatgctt gcaatgttta
    22081 gaaaaggtta aggagaaacg aaactatgtc ttttggattt gtgactgctg cgtacattat
    22141 tgcagctatt ctctttatta tgagcttagc cggtctttct aaacacgaaa ccgccaaagc
    22201 aggttgttgg tatgggattg tgggtatggc gattgcttta gtggcaacca ttttcggccc
    22261 gcaatcacat ggcacgattt ggatcttaat cgcaatggca atcggtggat tcatcggggt
    22321 gaaaaaagcc ctaaaagtag aaatgaccga aatgcctgaa ttagtggcaa ttctacacag
    22381 ctttgtcggt ttagcagcgg tattggttgg ttttaacagc tacggacttc ataccaatgc
    22441 attaatgcct gcaaatttag atgaaactgc acaagcggca tttttagcgg aacaagccac
    22501 tcttgccaat atccacaatg tggaagtgtt cttaggtatt ttcattggtg cggtaacctt
    22561 ctccggttca ttggttgcct ttggtaaact aagcggtaaa ttatttggtc gtaaagtctc
    22621 ttctgcagca ctgaatattc cacataaaca caaatggaat ttggcagcca ttatcgtttc
    22681 tgtttttttg atgatcgtgt ttttaaataa tccgcacaat atcttccctg tgctgattat
    22741 gacaattatt gcgttagtct tcggctggca cttagtttct tctattggtg gggcggatat
    22801 gccggtggta gtttcaatgc tgaattctta ttcaggttgg gcagccgcag cggcaggctt
    22861 tatgctaagc aacgatttat taatcgtaac cggtgcatta gtgggatcat caggtgctat
    22921 cctttcttat attatgtgta aagcaatgaa ccgctcattc attagcgtga ttgccggtgg
    22981 ttttggcaat gaagttcagt ctggcaaagg tgatgaagaa tacggtgaac accgtgaaac
    23041 gaaagccgaa gaagtggcag aaatgctgaa aaatgcaagc tctgtgatca tcacgccggg
    23101 ttatggtatg gcagtggctc aagcacaata tccggtagcg gaaatcaccg caaaattgcg
    23161 tgaaaaaggc gtgaatgtgc gttttggtat tcaccctgtg gcagggcgtt taccggggca
    23221 tatgaacgta ttattggcgg aagcgaaagt accttatgat gtagtgctgg agatggacga
    23281 aatcaatgac gattttgaag aaaccgatgt ggtattggta atcggtgcaa acgataccgt
    23341 aaaccctgct gcattagacg acccatcaag ccctattgct ggaatgccgg tgcttgaagt
    23401 atggaaagca caaaatgtta tcgtgttcaa acgttcaatg gcagtaggct acgccggtgt
    23461 gcaaaaccca ctgttcttta aagaaaatac ccaaatgcta tttggtgatg caaaagaacg
    23521 tgttgatgat attttacggg cgttaaatta aatttaaata aaaaagcgaa cataagttcg
    23581 cttttttgtg cttaggctaa cataaattgt taatttttta ctctaatacc atcaatccgg
    23641 gaagagtcgc aaaactctgc gattttacgg tatcatggaa atcatctaag taggctaggg
    23701 tagcatcggc ttctcgaata gcgccataaa gggtgctata tagtccttgc tgagttattt
    23761 ttcttgccac cacatacccc ctatctaaat atggtttaac cgcccaataa ggtagtgcag
    23821 caatgcctcg ccgacttgct actagctgaa taatagcaat agttaactca ctattacgcc
    23881 gagtaacttt gatgccagca gggcctaata tttttcgcag taaatctagc atatcatcag
    23941 gtactggata ggtaattaat gtctcatctt taaaatcttc agcttcccat acatcttttg
    24001 tggcaagagg gtgatcttta gagcaaatag ctaccatttc atatgaaaag agaggtttgt
    24061 atataatacc agcactatct tcctcttcag cgacaattgc cagatctgca cgatggctta
    24121 atagcaaacc aaccgtatca gtatggaaac ccgatacgat atctaattca actagaggcc
    24181 aatgttgacg gaaagtatcc attgccggca ttagccaatc aaaacaggta tggcattcta
    24241 ctgcaacacg tacctctccg acttctcctt gtttcactcg ggctaaatct aattcagcct
    24301 caatgacttt gggcaaaata tcgtaggcca acttaattaa acgttcgcca gctggtgtaa
    24361 agcgaatagg ggagcttttt cgctcaaata gcgtaagatc atactgttct tccagtaatt
    24421 ttatttggtg tgaaagtgcg gattgtgtta aatggacacg ctttgctgca agagatacgc
    24481 taccgctctc ttttaatgcg attaatgtcc gcaaatggcg gatttcaaga aaaatcggtt
    24541 tcataattta ttcatctaaa agtgaaaaaa gatgaaaata attataacaa acaagcggtc
    24601 aaattctgca aaaaatttgc aaaatccaac cgcttgtata gagcagtggc gaattattgg
    24661 gttaattgaa ctaaaatgcg gcgaacaggc tctgctgcac cccataataa ttggtcacct
    24721 acggtaaatg cagctaagta ttctccaccc atcgctaatt tacgcaagcg accaaccggc
    24781 acgctcaatg taccggtcac tttcgccggg gtcaattcac gcaatgtggt ttctttgtcg
    24841 tttggaatta ctttcaccca ttcattgtgg gcagcaataa tttgctcgat ttccgctaac
    24901 ggaatatctt ttttcagctt aattgtgaat gcttggctgt ggcagcgtaa tgctccaata
    24961 cgcacgcata aaccatcaac tggaattggg ttatcgctta aacctaaaat tttattagtt
    25021 tctgcataac ctttccactc ttctttagtt tgcccggttt ccggtaataa tttatcaatc
    25081 caaggaatta agctaccgcc caatgccgca ccgaagttct cggttgggaa gtcttccgca
    25141 cgcattttag ccgtaacttt acgttcaata tctaaaatag aagaggcagg atttgctaat
    25201 tcagctttta cgctatcttc taattcaccc atttgagaaa gcaattcacg catatttttc
    25261 gcaccggcac cggaagcggc ttggtaagtt gctacagaaa cccactcgac caaatctttc
    25321 tcaaataaac caccgatagc cattagcatt aggcttacgg tacagtttcc gcctacaaat
    25381 gttttaatgc cgttttttaa gccttctgaa atcacatgtt ggttcaccgg gtctaatacg
    25441 ataatagcat cgtctttcat acgtaatgca gaagccgcgt caatccaata gccgttccaa
    25501 ccggtttctt ttaattttgg atagacttca tttgtataat caccaccttg gcaagttacg
    25561 ataatgtcta atttttttaa ttcttcaatg tcaaaggcgt tttttaattc gccggcatct
    25621 tttccgccaa aaacaggggc tttttgaccc gcttgtgaag tagtgaaaaa aacagggttg
    25681 atattggcga agttattttc ttcaaccata cgatccatta agaccgaacc gaccatacca
    25741 cgccaaccga taaaacctac attttgcatt gtgtttgctc ctaaaaatga tgttataaag
    25801 attgtgaata aatacaggat tttagtgcaa aaatcaatgt tttttattga tttgcaaagt
    25861 tttgacaaaa tttaaccgct attgttaaaa taaaacatcg attatggtgt atttttggaa
    25921 ataaatagaa tcttataaat agggaaatgc tcacaattta tgcattccaa ttgtggtcta
    25981 atcaataaat tttgccgata tatcgatagg aagtagatgt aat
//
LOCUS       DANLRW010000026        25441 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.026, whole genome shotgun sequence.
ACCESSION   DANLRW010000026 DANLRW010000000
VERSION     DANLRW010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 25441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25441
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.026"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            94..840
                     /locus_tag="PXA71_000876"
     CDS             94..840
                     /locus_tag="PXA71_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5105006.1"
                     /translation="MQLRHKQIMEYIQQFDEANVQELAEHCGVSIETIRRDLNKLDKD
                     GLLHRTHGGAVSHKKRDIGRSFTTRQRLNSEAKRSIAENVLEYLQPESVIALDASSTS
                     WNVAQRIPNIPCTVVSSSMRIIYSLSHKPHIKTIATGGIYSEKYDAFYGPLSEQLLTR
                     LKIDLAILSCTGIADGAIWESNEINISLKRKLIANSKQVFLLADHSKFERKDLFRIED
                     LSCIDKLFINQPPPDFLKNYCLAHQIEIII"
     gene            1036..2799
                     /gene="fucI"
                     /locus_tag="PXA71_000877"
     CDS             1036..2799
                     /gene="fucI"
                     /locus_tag="PXA71_000877"
                     /EC_number="5.3.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005619331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose isomerase"
                     /protein_id="HDL5105007.1"
                     /translation="MTTLKSTPVKIGIRPTIDGRRLGVRESLEDQTMNMAKAVAQLIQ
                     SEVRHPNGDFVECVIADSTIGGVAEAAACAEKFKRENVGAVITVTPCWCYGSETIDMD
                     PHMPKAIWGFNGTERPGAVYLAAALAGHSQLGLPAFSIYGTEVQEADDQSIPDDVREK
                     LLHFARAGLAVATLRGKSYLSIGSVSMGIAGSIVNQQFFQEYLGMRNEYVDMTEIKRR
                     LDRHIYDAEEFKLAMSWVKTYCKEGIDVNAPENQRSPEEREKLWEDVVKMTIIARDLM
                     VGNPRLAELGYSEEALGHNAIAAGFQGQRQWTDHLPNGDFMEATLNSTYDWNGVRAPY
                     IMATENDSLNGVNMLFGNLLTGQAQIFADVRTYWSEDSVERVTGWRPESGFIHLINSG
                     SAALDGTGQHTDRAGKPTIKPAWEVTEEDGKRCLENTCWCPAVHEYFRGGLSSQFLTK
                     GGMPFTMHRINLIKGIGPVLQIAEGWSIDLPENVHDILNKRANETWPTTWFVPRLTGK
                     GAFTDVYSVMANWGANHCVATFGHVGADLITLASMLRIPVCVHNVEDKDVFRPSAWNG
                     FGQDKEGQDYRACANFGPLYK"
     gene            2993..4426
                     /gene="fucK"
                     /locus_tag="PXA71_000878"
     CDS             2993..4426
                     /gene="fucK"
                     /locus_tag="PXA71_000878"
                     /EC_number="2.7.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
                     /protein_id="HDL5105008.1"
                     /translation="MPISLIFDCGATNLRTIAINQAGEIVAAHHLPNNTQPDVESPEF
                     HIWDIEEIWSKLMTCAKQTLSQLSEQQRQEIVGISVTTFGVDGALFDKNGKQLYPIIS
                     WKCPRTLPIMENLANYLDVEALYQRNGVGHYSFNTLFKLLWLKENKPEIYQQAESFLF
                     ISSILTYLLTGVQTTDRTMAGTSMMTNIENDSWDKTVLDLLGLTENHFPPMKSAGEVV
                     GTLKGEISQELGLSGQIPVISCGHDTQFAIFGSGAGYNQPVLSSGTWEILMVRTPKAK
                     PQWQFVQNGLTIEFDSQSGYFNPGVQWVASGVMEWFGKRFFSDIANTEHYYRTMIEEA
                     AEVPAGSNGVKLVGNFDGTTAKTGSIIGLSMHITRGEIYRAGLEYMAHRLKEGLDVLQ
                     EVGHFNAESLICVGGGSKNALWNQIRADVLNRPIDVVDFPESTVLGAAMFTFTGAGVF
                     ENPNAAQQAMKPNVKRVEPSSNSQFYK"
     gene            4501..4932
                     /gene="fucU"
                     /locus_tag="PXA71_000879"
     CDS             4501..4932
                     /gene="fucU"
                     /locus_tag="PXA71_000879"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HDL5105009.1"
                     /translation="MLKGIHPAISPDLLKVLAEMGHGDELVLSDAHFPAHSIHQNVIR
                     ADGLSVATLLEGISALFEFDQYVEAPLAMMQAVKGDTLDPSVEERYLNAIKKVNGTAP
                     KIERVERFAFYDRAKNAYAVVITGELAKYGNIIIKKGVTPV"
     gene            4992..5645
                     /locus_tag="PXA71_000880"
     CDS             4992..5645
                     /locus_tag="PXA71_000880"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HDL5105010.1"
                     /translation="MDRKILARQIIDTCLEMTRIGLNQGTAGNVSVRYKDGMLITPTG
                     TPYEQMTEDSIVFVDGNGKHEEGKLPSSEWQFHLAVYEARPELNAVVHNHAKNCAAVS
                     ILGEPIPAIHYMIACTGTNHIPCVPYAPFGTHQLADYVREGIKHSKAILLAHHGLITA
                     DKTLEKALGIAHEVEVIAEWYLKLLATGKPIPTLNKEQMDIVLGKFKSYGSWVESEQ"
     gene            5707..7236
                     /locus_tag="PXA71_000881"
     CDS             5707..7236
                     /locus_tag="PXA71_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5105011.1"
                     /translation="MQNEVILTMKNISKSFAGVNALKGVELTLRKGEVHALMGENGAG
                     KSTLMKCLLGVYQADEGEIIYKGQPVRFESVLEAQKAGISMIFQELNLIPHLTVAENI
                     FFAREPLKHGLVDKDKMVEESAKLLNFFEIDVDPNDEVRMLSVAKQQMVEIAKALSFD
                     VEVLIMDEPTSALTEKEIDKLFELVDRLRAKGVSIVYISHRMEELKRICNHITIFRDG
                     TYVSNHKFNEITMDEIITKMVGRSLDNHFPPKTAVVTNDIILSIMNAERKGVFEPLNF
                     DLRKGEILGITGLVGAKRTELARAIFGADPLDSGEIFVHENKVSIKDPSDAIKAGIAY
                     LSEDRKLNGVAVRMSIRENITMASMDKVANQIGVISYDEEEKASKTFIDKMEIKTPTI
                     EQKVQNLSGGNQQKVVIGKWLFREAKVMIFDEPTRGIDVGAKYAIYQLLDELAANGVG
                     VIVISSELPEVLGVSDRIIVMREGRMTGMLETKKTNQEEIMHYATGVKNMFAREYGVE
                     K"
     gene            7233..8231
                     /locus_tag="PXA71_000882"
     CDS             7233..8231
                     /locus_tag="PXA71_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5105012.1"
                     /translation="MNEKQKEMLRKMAALAGLVLLIIFFSVTNEYFFTSNNIMTVGLQ
                     TSTIALIGIGATCVILTGGIDLSTGSVVALSGVAAAMIVNAGVPVPLGMILGILVGGI
                     CGLINGILVTRMKLPPFIATLGMMMVARGLALYVTNAAPVSGMPESFANLGNGALFKI
                     VEEGANGLPKVVFAGIPYPVIIMIFITVLFTFALSKLKVGRYLYAIGSNEEAARLSGI
                     KTNIVKIYAYVASGLLSGLTGVILASRLVTAQPNGGVSYELDAIASAVVGGTSLMGGV
                     GTIPGTLIGSFIIGVLRNGLNMNGVSSFVQMIVIGLVIIVAVSLDQLRQSKKAGKK"
     gene            8255..9202
                     /locus_tag="PXA71_000883"
     CDS             8255..9202
                     /locus_tag="PXA71_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5105013.1"
                     /translation="MKKSALFTATLFGLSTLFAGSAMAKSDEIAVIVKSANSTFWQNV
                     RKGAETAGKDIGGQYKVTFQGPEAETAIDAQVNMVDNAVNRGVAGIVLAASDPVALVP
                     AVKKAYESGIPVVLIDSGINSDGKYYQSFLATDNRAAGKLAAEKLLAKVKGGKVAVMS
                     FTQGAASAIERTGGFIDEIKAKADYKLVGPYYSDSDMTKALNQTEDVLGSNPDLAAIF
                     GANEPTAVGMARAVKQKGFAGKIVAVGFDGNSDLQNFVRDGTLDGIVVQSSYQMGYKG
                     VDTIGKLIKGEKVEKVIDTGVVYVTKENIDSEEAKGVLY"
     gene            9258..9509
                     /locus_tag="PXA71_000884"
     CDS             9258..9509
                     /locus_tag="PXA71_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIB"
                     /protein_id="HDL5105014.1"
                     /translation="MSNTLTDKALVVIAALGGRENIVDVYACITRLRVEVKNTDIVEW
                     DKIKSVGALGVVTSGSVIQSIFGSDAEAYRDEIKRILNI"
     gene            9638..10789
                     /gene="fucO"
                     /locus_tag="PXA71_000885"
     CDS             9638..10789
                     /gene="fucO"
                     /locus_tag="PXA71_000885"
                     /EC_number="1.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
                     /protein_id="HDL5105015.1"
                     /translation="MANRLILNETSYHGKGAIQNIVHEVTSRSFKKALVVTDKDLIKF
                     NVAQKVTALLDAAGLPYEIFDEVKANPAVDVIKAGVAKFKASSADYLIAIGGGSPIDS
                     AKAIGIIINNPEFSDVLSLEGVAPTHQKCVPIIAIPTTAGTAAEVTINYVITDEAKKR
                     KFVCVDVHDVPAVALVDPDMMESMPKSLAAATGMDALTHAIEGYITKAAWELTDALHL
                     KAIELIGRSLRGAVEKNPKDVEAMALGQYVAGMGFSNVGLGAVHSMAHPLSAYYDTPH
                     GIANAVLLPYVMEFNKNYTGEKYREIARAMGVKGVDEMSQEEYRNAAIAAVQQLSQDV
                     GIPPKLHQIGVKEADLAALSVDAFNDVCTGGNPRDCTAEELLEVYRIAY"
     gene            11056..12501
                     /gene="aldA"
                     /locus_tag="PXA71_000886"
     CDS             11056..12501
                     /gene="aldA"
                     /locus_tag="PXA71_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDL5105016.1"
                     /translation="MVKQHKMYINGEFVPALDGRTLAVYNPATEKAISEVPRGGADDA
                     KIAIDAAEAAQEAWERLPAIERGKYLRQIAVGIRERADEIARTISEEMGKTLSLATVE
                     VHFTADYLDYMAEWARRYEGEIIQSDRPNEHIFLYKKAIGVTTGILPWNFPFFLIARK
                     AAPALVTGNTIVIKPSEDAPNNAILFSEIVHQVGLPKGVFNVVTGYGNEVGPELSGNE
                     KIGMVSFTGSQFAGQKVMEAASKNIIKVNLELGGKAPAIVLDDADLELAATAVVNSRI
                     INSGQVCNCAERIYVQSSIKEQFVQKLVEKMQAVKYGNPLEQQDIDMGPMVNEKGLHK
                     VQEMVTHALHQGGNLVLGGNVVEGTGYYFEPTIIDNVDNSMDIMRHEIFGPVIPVATF
                     DTIDEAIRLANDCEYGLTSSVYTQNINKAMKVISRLKFGETYVNRENFEAMQGYHAGW
                     RKSGIGGADGKHGLEEYLQTQVVYLQFDDKV"
     gene            12757..13404
                     /locus_tag="PXA71_000887"
     CDS             12757..13404
                     /locus_tag="PXA71_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HDL5105017.1"
                     /translation="MSIFQQTNPNRRRYGLAVFIGIIAGIISAFVKWGAEHPFPPRSP
                     IDLFTAACPQPVLDAMNAAADQVAAKTIALQECSRAFLNPPHVFLRDYIGIDPTEAAF
                     TFADHAFNWIGVTHMIFSLVFAIGYCIVAEIFPKIKFWQGIGAGIIANICVHYITFPA
                     LGLTPPVAEWPLYEHISELVGHIFWFWTIEVIRRDLRNRITREPDAEVPLDQPFR"
     gene            complement(13537..14913)
                     /gene="trkA"
                     /locus_tag="PXA71_000888"
     CDS             complement(13537..14913)
                     /gene="trkA"
                     /locus_tag="PXA71_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HDL5105018.1"
                     /translation="MKVIILGAGQVGSTLAENLVSEDNDIVLVDNDPTRLDKLKDKHD
                     LQVIRGEYASPQTLRDAGAGDADLLVAVTNSDEVNMIACQIAYTLFNVPTKIARIRSA
                     DYVRERERLFNDDVLPIDHIIAPEILVKEDILRLIHYPGALQITHFADELVSIVNVKA
                     YYGGPLVGYPISALRDHLPHIDARVVAIFRQDKAIVPQGSTIIEAGDEVFFICATQHI
                     RAVMSELQRLDRPHKRIMIVGGGSIGSSLARDLEDQYRVKIIERNPVRAEKLAEKLSK
                     TMVLTGDASDEELLFEEHIENIDLFLAVTSDDEANIMSALLAKRLGAKKVIILVQRPA
                     YLHLIQGGTIDIAISPQQATISALASYVRKGDILQVSSLKLGVAGAVEIIAHGDATTS
                     KVVGRQIRELKLPQGAIVGAVVRGEEVIIAHKSTMIAENDRVIIFVNDKKQIDEIEKL
                     FQLGVFFL"
     gene            complement(14913..16244)
                     /gene="rsmB"
                     /locus_tag="PXA71_000889"
     CDS             complement(14913..16244)
                     /gene="rsmB"
                     /locus_tag="PXA71_000889"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HDL5105019.1"
                     /translation="MKKQSFKALSSRAISATIILQVLDQGKSLSTLIPDAQKQLEPKD
                     LPLVQEITFGVCRVLPRLESIIKLLVEKPLKGKTRLVHCLLLVGLYQLLYMRVPAHAA
                     VDEVVNATKTLKLDSFRALTNGVLRRFLREQEEILAKVDKHWQTLHPEWLVNKLKKAY
                     PNWREIVEANNQRPPMWIRVNQQHIKTNDYAALISELVEPEFAKNSENPTACVPKCAL
                     LLERAVNVNQLPHFEQGWATVQDAHAQWSAELLGAENGETVLDACAAPGGKTTHILEK
                     APKAKVMALDIEESRLSRVRENLVRLGQIAQVICGDASKPEEWLEEGVLFDRILLDAP
                     CSATGVIRRHPDIKWLRKEGDIAELATLQGEILKALWQRLKPNGILLYATCSVLPQEN
                     SEQIQRFLQDTPNAKQLEIDFNGEKVLEKQFFPQPNGGDGFFYAKLQKVAE"
     gene            complement(16296..16721)
                     /locus_tag="PXA71_000890"
     CDS             complement(16296..16721)
                     /locus_tag="PXA71_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL5105020.1"
                     /translation="MYNKLLIAIDLADLKSAKYVVDTALQMTAKNPNAVYRVVSIIEP
                     VDNSLISAFLPKNFDKEVVAEANQKLHEFTKNHFPEGSKVQHIVAYGTIYEEICRIAD
                     EKSVDLIMMLASSKPNAKGLSSNTVKVARNTTKPILVLR"
     gene            complement(16814..19462)
                     /locus_tag="PXA71_000891"
     CDS             complement(16814..19462)
                     /locus_tag="PXA71_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter permease"
                     /protein_id="HDL5105021.1"
                     /translation="MSVESKVDYDDLQDMVASNDSGGRTPSGLAKKAIVYVAILWSVF
                     QIYYASPLPFVFQEWLTHAGINLNVVVDDTKARSIHLAFAMFLAFLSYPAFASSPKHH
                     IPKIDWVFAIVGAGLALYYIFFYEGLVKRFGAPNTQDIIAGCLGILLVLEATRRSLGL
                     PLVIIAIVFLIYNFFGQYFPADWIVSHRSGSLSQIINQQWITTEGVFGVALGVSTKYV
                     FLFVLFGALLDKAGAGNYFIKTAFAYLGHLRGGPAKAAVVSSALTGLISGSSIANVVT
                     TGTFTIPMMKRVGFTKEKAGAVEVASSVNGQIMPPVMGAAAFLMIEYVNMPYSQLITH
                     AFLPALISYIALVYIVHLEACKMNLQGLPRAEEPSPILVFLLRTVASILVIVGLAIGV
                     YYGLGWIRDVAEDYAFMIVCAFLGLWYLLAIRRVASYPDLEADDPNSEIVSLPKRKPT
                     VNAGLHYLIPVVVLLWCLMVEMLSPGLSAFWGTITLIFIQLTQRPLLNFFRKESVTKE
                     IIKQGVRDVVDSLEAGGRNMTGIALATATAGIIVGVVALTGFGVQLSSVIELLSMGNI
                     VLMLILVAVFSLILGMGLPTTANYIVVSSLMATVIMEVGRQNGLIVPLIAVHLFVFYF
                     GIMADVTPPVGLASFAAAAISGGSPINTGMVAFKYSLRTVILPFLFIFNTDLLLIDLR
                     YPGHGWVVFITATVGVLAFTSATMQYIVTKNKWWETALLVVAAFALFRPGFFMDRIYP
                     SERHIEPVQFEEQLLASKVGQNVTLKVEGLNPYGKEIEFYAQLPVPEGATGEERLKNL
                     GLTLIQTDEKIKVDGVETPKVVIDMVEMDSPAAKAGLNWDQTIHYIAVPQDAPSKDWI
                     FIPALLLVFGIVANQRRRVKKQCVIA"
     gene            complement(19664..20626)
                     /locus_tag="PXA71_000892"
     CDS             complement(19664..20626)
                     /locus_tag="PXA71_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TAXI family TRAP transporter solute-binding
                     subunit"
                     /protein_id="HDL5105022.1"
                     /translation="MKKLVKLSFLASLVMGTASVQAAETFVTIGTGGQTGVYYVVGQS
                     ICQLVNRDSAKTGLKCNAPSTGASVANLNAIAAKEMDMGIAQSDWQYHAYNGSSSFEG
                     KKNDKIRAIFSLHPEPFTVMARTDSGIKSFDDLKAKRVNVGDPGSGTRATMNVILAAK
                     GWTDKDFKVASELKPAEMASVMCDNNLDAITYNVGHPNGALKEAAASCDAKLVPVTGP
                     EIDKLVADHSYYAKATIPGGLYKGSDEPTETFGVYATLVTSADVDADKVYNVTKAVFD
                     NFDRFKRLHPAFEHLKQEEMIKNALSAPLHEGAIRYYKEKGWIK"
     gene            complement(20810..22657)
                     /gene="selB"
                     /locus_tag="PXA71_000893"
     CDS             complement(20810..22657)
                     /gene="selB"
                     /locus_tag="PXA71_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HDL5105023.1"
                     /translation="MIICTAGHVDHGKTSLLQALTGTNTAHLPEEQKRGLTIDLGYAY
                     LPIENDILGFIDVPGHQRFLSNMLAGLGGIQHALLVISAEEGIKPQTEEHLDILHLLN
                     FQHIMIVITKADRAEETQISHLIEQVKTSYPFLAEAKTFVTSAKTQQGIEELKAHLIQ
                     LNQQHTQTHKPFRYAIDRVFNVKGAGLVVTGTTVAGKVSVGSELFLSNGKKVRVKAIH
                     AQNTPSETGVAGQRLALNIANVEKEEIKRGDWITELEPKFATDRITVQLTANQAFKEN
                     SIVHLYHFASHITGKLNLLEGQQAVKNQQFFAEVILDEPLHIAVGDKLIIRSGDDSLT
                     LAGAEVLEIHSPKRHKRTEARLALVKNLAKTTACNDFATRLDLYLQNRAMDLSLLLWA
                     EQCFAEDIAKLGFDVSSKWLFNSDFKAQAQQRVLEKMAEYHLQHQDQIGVTKARLYRI
                     ALLDLPENLANQFIEDLVEQKALVNSRGWLHLPEHRIELNADELQIWQQIRPLFEATN
                     QALWVRDIASQLSIDETQMRNLLYKVGKLGYLIPIVKDRFLLSEQIGQFATLIKDFIA
                     QNGSISVNQLRDELQYGRKLTVQLIEYFDRSGFLRRKGDVHLLRDSETF"
     gene            complement(22667..22963)
                     /locus_tag="PXA71_000894"
     CDS             complement(22667..22963)
                     /locus_tag="PXA71_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5105024.1"
                     /translation="MMKFDYNIVWLQKAEIKLFYQADYILQQSQNPIIAEQFYDAIKS
                     EVDKLSFTADVYRLRKKKEIPILNGKYQVKFLIGQENVYIVDFKSARQNSYSFL"
     gene            complement(22960..23136)
                     /locus_tag="PXA71_000895"
     CDS             complement(22960..23136)
                     /locus_tag="PXA71_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105025.1"
                     /translation="MELILAQDLAKLRTDKPQSFYTNDELDLLHQLENGLIETKSHAQ
                     VMEDLRKKLGITEK"
     gene            complement(23205..23837)
                     /gene="pdxH"
                     /locus_tag="PXA71_000896"
     CDS             complement(23205..23837)
                     /gene="pdxH"
                     /locus_tag="PXA71_000896"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005575912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HDL5105026.1"
                     /translation="MDLHHIREDYTKKVLSIRDCHSNPITQFEQWLSEAINAKVNEPT
                     AMNIATVAANGRPSSRMVLLKEVNSQGFVFFTNYQSRKGWEIADNPFGCLTFFWAELQ
                     RQVRIEGKIAKIPEAESDAYFDSRPYTSRLGAWASEQSQPIENYKALLLKSAQFALKY
                     PLSVPRPPHWGGYILIPDSIELWQGRSSRLHDRIHYWLENNEWKKERLSP"
     gene            complement(23895..25277)
                     /locus_tag="PXA71_000897"
     CDS             complement(23895..25277)
                     /locus_tag="PXA71_000897"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HDL5105027.1"
                     /translation="MQQLFRQIPSLDLLLKKPQAVELCQKFAYSSVAEQARSLLTQAR
                     QFISQQQALPDFIADENLFFIRLEQKVQALSEVKIRSVFNLTGTVLHTNLGRGLWSEK
                     AIQAATNAMRNNVALEFDIEAGKRSHRDNYISELLQILTGAEAACIVNNNAAAVLLML
                     ATFAQGKEVIVSRGELVEIGGAFRIPDIMAQAGCKLVEVGTTNRTHLKDYRNAITENT
                     AFLMKVHTSNYHIEGFTSSVSEEELVALGKEFNLPVITDLGSGSLTDMQALNLPAEPK
                     VQQKVAAGVDLVSFSGDKLLGGPQAGIIVGSQAMISQLQQHPLKRVLRCDKVILSALE
                     ATLRHYLFPEQLTDNLPTLHLLTQPLETLQHKAERLKQALHKRLNSAYILQIELSLAQ
                     IGSGALPTETLPSVAVTISAEKQSDLIALEQQFKTYPSPIIGRFAQQKFWLDLRSVAE
                     FDKLIEMLEY"
     gene            25345..25439
                     /locus_tag="PXA71_000898"
     tRNA            25345..25439
                     /locus_tag="PXA71_000898"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:25379..25381,aa:Sec,seq:tca)
BASE COUNT         7412 a         5541 c         5395 g         7093 t
ORIGIN      
        1 aatgtgatcg ccttctaaaa atcaaatttg cttgctcgac agtaacgcta caagcggtta
       61 aatttggaga aaaatttaca aaaaggatag attatgcagc tgcgacacaa acagataatg
      121 gaatatatac aacagtttga tgaagctaac gttcaagaat tggcggaaca ttgtggggtt
      181 tcgattgaaa ctatccgccg agatttaaat aagctagata aagatggatt attacatcgc
      241 actcacggtg gagctgtgag ccataaaaag cgagatattg gtcgctcatt taccacccga
      301 caacggctga acagtgaggc gaaacgcagt atcgcagaaa atgtgttgga atatttacaa
      361 ccagaatcgg tgattgcttt agatgccagc tcaacctctt ggaatgtggc acagcgtatt
      421 ccaaatattc cttgcaccgt tgtcagcagt tcaatgcgga ttatctacag cctttcacac
      481 aaaccgcaca ttaaaacgat tgccaccggt ggtatttatt ccgaaaaata cgatgccttc
      541 tatggtccat tatccgagca gttactgacc cgtttaaaaa ttgatcttgc cattctttct
      601 tgtacaggca ttgccgatgg ggcgatttgg gaatcaaatg aaattaatat ttcccttaaa
      661 cgtaaattaa ttgcgaacag taaacaggtt tttttattag ccgatcacag taaatttgag
      721 cgtaaagact tgtttcgtat cgaagattta tcttgcattg ataaattatt tatcaaccaa
      781 cccccaccgg actttctcaa aaattattgc ttagcacatc aaattgaaat cattatttag
      841 tgatttctgc ccgattttat tcagaaataa aacaaatcgg gcattctttt ttcactcatt
      901 tttaccaaaa tcccccattt tttgtgatcg cactcacaaa atttaaacta aattcgcatt
      961 tttcttcata actcatattg cgtatgcata ataaattcaa tcgcaaattt ttttaaccaa
     1021 tcgggagaac tatttatgac aacgttgaaa tctacccctg taaaaattgg tatccgccca
     1081 accattgacg gtcgccgttt aggagtgcgt gaatcacttg aagatcaaac aatgaatatg
     1141 gcaaaagccg ttgcacaatt aattcaatct gaagtccgcc acccaaatgg tgatttcgtt
     1201 gaatgtgtga ttgctgattc caccatcggt ggtgttgccg aagctgcggc ttgtgcagaa
     1261 aaattcaaac gtgaaaatgt cggagcggtg attaccgtaa ccccttgctg gtgctacggt
     1321 tctgaaacca ttgatatgga cccacatatg ccgaaagcca tttggggctt taacggaaca
     1381 gaacgcccag gtgcagttta tttagctgct gctttagcag gtcatagcca attaggttta
     1441 ccggcattct ccatttatgg cacagaagta caagaagctg acgatcaatc tattccagac
     1501 gatgtgcgtg aaaaattact ccactttgcc cgtgccggct tagcagtggc aaccttacga
     1561 ggaaaatcat atttatctat cggctctgtt tcaatgggta ttgccggttc tatcgtaaac
     1621 caacaattct tccaagaata tttgggtatg cgtaacgaat atgtggatat gaccgaaatt
     1681 aaacgccgtt tagatcgcca tatttacgat gccgaagaat ttaaattagc aatgagctgg
     1741 gtgaaaacct attgcaaaga aggtattgat gtcaacgcac cggaaaatca acgcagcccg
     1801 gaagagcgtg aaaaactctg ggaagacgtg gtgaaaatga ccattattgc ccgtgattta
     1861 atggtgggta atcctcgctt agcagagcta ggctatagtg aagaagcctt agggcataat
     1921 gcgattgctg ccggtttcca agggcaacgc caatggacag accatttgcc aaacggcgat
     1981 tttatggaag ctaccttgaa ttcgacctat gactggaacg gcgttcgcgc accatacatt
     2041 atggcaactg aaaacgacag cttaaatggc gtgaatatgt tgttcggtaa cttattaacc
     2101 ggtcaggcac aaatctttgc cgatgtgcgg acatactgga gcgaagactc ggtagaacgt
     2161 gtcaccggct ggcgtccgga aagcggtttt atccacttaa tcaactccgg ctctgcggcg
     2221 ttagacggaa caggtcagca taccgataga gcaggcaaac caactattaa accggcttgg
     2281 gaagtgactg aagaagacgg taaacgttgt ttagaaaaca cctgttggtg tccggcagtt
     2341 cacgaatatt tccgtggtgg tttatcttcc caattcttaa ccaaaggtgg aatgccgttt
     2401 acgatgcacc gtatcaacct gatcaaaggt atcgggccgg ttttacaaat tgccgaaggt
     2461 tggtctatcg acttgccgga aaatgtacac gacattttaa acaaacgcgc caatgaaacc
     2521 tggccgacca cttggttcgt acctcgctta accggaaaag gcgcatttac cgatgtgtat
     2581 agcgtaatgg cgaactgggg tgcaaaccac tgtgtggcaa ccttcggaca cgttggggca
     2641 gacttaatta ccctcgcctc aatgctccgc attccggttt gtgtgcacaa tgtggaagat
     2701 aaagacgtat tccgcccaag tgcgtggaac ggtttcggtc aagacaaaga aggtcaagac
     2761 taccgtgctt gtgctaactt cggaccatta tataaataat acacaatcac cctctcccct
     2821 tgtgggagag ggacagccaa gcaattcgtt cagaattgaa tggcagggag agggctacaa
     2881 gcggtcgctt ttctctcaaa atttacaaat ccctctctct gattaaattg ctaaacgcaa
     2941 tttaatctat ctctctaaaa gggagatatt aggataagta aaggagataa caatgccaat
     3001 ttctcttatt ttcgactgtg gtgccaccaa cctccgtacg attgcgatta atcaagcggg
     3061 tgaaattgtg gcagcccatc atctaccgaa taacacacaa ccagatgtgg aaagcccaga
     3121 atttcatatt tgggatattg aagagatctg gtcgaaatta atgacctgtg ccaaacagac
     3181 gctttctcaa ctttcagaac aacaacggca agagattgtt gggatttcag taaccacctt
     3241 tggcgtggac ggtgcattat ttgacaaaaa cggcaagcag ctttatccga tcatttcttg
     3301 gaaatgcccg agaaccctac cgattatgga aaaccttgcc aattatcttg atgttgaggc
     3361 gttatatcaa cgtaatggcg ttggacatta tagtttcaac accttattca aattattgtg
     3421 gttaaaagag aacaaaccag aaatttatca acaagctgag agtttcttat tcatctcatc
     3481 tattttgact taccttctta caggcgtgca aacaaccgac cgcacaatgg cgggaacgtc
     3541 aatgatgaca aacatcgaaa acgattcgtg ggataaaaca gttttagatt tattaggctt
     3601 aaccgaaaac cattttcctc caatgaaaag tgcaggagaa gttgtgggaa cattaaaagg
     3661 agaaatttcc caagagttag gtttaagcgg tcaaattcca gtaatttctt gcggacacga
     3721 tactcaattt gccatttttg gctcaggagc tggctataac caacctgtgt taagttcagg
     3781 cacttgggaa attttaatgg ttcgtacccc aaaagcaaaa ccacaatggc aattcgttca
     3841 aaacggctta accattgagt ttgatagcca atctggttat ttcaacccag gtgtgcagtg
     3901 ggtagcttca ggtgtgatgg agtggtttgg caaacgtttc ttctctgata tagccaatac
     3961 tgaacattac taccgcacaa tgattgaaga agcggcagaa gtgcctgctg gctcaaacgg
     4021 tgtgaaatta gtcggcaatt ttgatggcac aacagctaaa acaggttcaa ttatcggctt
     4081 atctatgcac atcactcgtg gcgaaattta ccgtgcaggc ttggaatata tggctcatcg
     4141 tctaaaagaa gggttagatg tattacaaga agtcggtcat tttaatgctg agagtttgat
     4201 ttgtgtggga ggtggttcta aaaacgcttt atggaatcaa attcgagccg atgtcttaaa
     4261 tagaccgatt gatgtagtgg atttccctga aagtaccgta ttaggcgcgg caatgtttac
     4321 ttttacaggt gctggtgtat ttgaaaatcc aaatgcggct caacaggcaa tgaagccaaa
     4381 tgtgaaacgg gttgagccat cgtcaaatag tcaattttat aaataaagtt tctcccctct
     4441 ctctgatttg aggttcattc agaacatcaa atcagagaga gggtaaaaaa ggagttcaaa
     4501 atgttaaaag gtattcaccc ggcaatttct ccagatttat taaaagtctt agccgaaatg
     4561 gggcacggcg atgaattagt gctttctgat gcacacttcc ctgctcactc tattcatcaa
     4621 aacgtcattc gtgcagatgg cttaagtgtt gccaccttat tagaaggcat ttctgctctg
     4681 tttgaatttg accaatacgt tgaagcccca cttgcaatga tgcaagcagt aaaaggcgac
     4741 acgctcgatc caagcgttga agagcgttac ctcaatgcaa ttaaaaaagt aaacggaaca
     4801 gccccgaaaa tagagcgtgt agaacgcttc gctttctatg atagagccaa aaacgcttat
     4861 gccgttgtca ttacaggcga gttagccaaa tacggcaaca ttattatcaa aaaaggcgta
     4921 acaccggttt aattacaagc ggttaaaaaa gcagaatttt ttacaaatat aaaattaaaa
     4981 ggagttcaac aatggacaga aaaatactgg cgagacaaat cattgatact tgtcttgaaa
     5041 tgacccgaat tgggttaaat caaggtacag caggcaatgt gagcgtacgt tataaagacg
     5101 gtatgctcat tacgccaaca ggtacacctt atgagcaaat gaccgaagat tctatcgtct
     5161 ttgttgatgg caacggcaaa cacgaagagg gaaaactccc ttcaagtgag tggcagttcc
     5221 atttagcggt ttatgaggct cgccctgaat taaatgcggt agttcacaac cacgctaaaa
     5281 actgtgccgc agtgtctatt ttaggtgaac ctatccctgc cattcactat atgatcgcct
     5341 gcaccggcac taatcacatt ccttgtgtac cttatgcccc gttcggcact caccaattag
     5401 ccgactatgt acgtgaaggc attaaacaca gcaaagcaat tttactcgct caccacggct
     5461 taatcaccgc agataaaacc ctcgaaaaag ccctcggcat cgcccacgag gtggaagtga
     5521 tcgcagaatg gtatttgaaa ctgctcgcta caggaaaacc tatcccaacg ctaaacaaag
     5581 aacaaatgga tatcgtactc ggaaaattta agtcctatgg ttcttgggtg gaaagcgaac
     5641 aatagcctgc cataaataac atacaagcgg tgatatttct taaaattttt acaaacggag
     5701 tgcagtatgc aaaatgaagt aatactcacg atgaaaaaca tcagtaaatc ctttgcgggg
     5761 gtcaatgcgt taaaaggtgt tgagcttacg ctgcgtaagg gcgaagttca cgcattaatg
     5821 ggcgaaaacg gtgcaggtaa atccaccttg atgaaatgct tgctgggcgt atatcaagcc
     5881 gatgaaggtg aaatcatata taaaggtcag cctgttcgct ttgagtcggt attagaggca
     5941 caaaaagcgg gcattagtat gattttccaa gaactgaacc tcattcccca tttaacggtg
     6001 gcagagaata ttttcttcgc ccgtgagcca ctcaaacacg gtttagtgga taaagacaaa
     6061 atggtggaag aatcggctaa attgctgaat ttctttgaga ttgatgttga tccaaacgat
     6121 gaagtgagaa tgttgtcggt agccaaacaa cagatggtag aaattgccaa agccctttca
     6181 tttgatgtgg aagtactgat tatggacgag ccgacctccg ctcttaccga aaaagagatc
     6241 gataaattat ttgaattggt cgatagactg cgtgccaaag gggtgagcat tgtctatatt
     6301 tctcaccgaa tggaagaatt aaaacgtatc tgtaaccata ttacgatttt ccgtgatggc
     6361 acctatgtat ctaaccataa attcaatgaa atcacgatgg atgagatcat taccaaaatg
     6421 gttgggcgtt cattggataa ccatttccca ccaaaaaccg ctgtggtgac aaacgacatt
     6481 atcctctcga ttatgaatgc tgaacgtaag ggagtgtttg aaccattgaa ctttgactta
     6541 cgcaaaggag aaattctggg cattaccggc ttggttggag caaaacgtac tgaactggct
     6601 cgagccatct tcggagcaga cccacttgat agcggtgaga tttttgtgca cgagaacaaa
     6661 gtcagcatta aagatccgag tgatgcaatt aaagccggta tagcctattt gtcggaagac
     6721 cgtaagctca atggtgttgc agtaagaatg tcgattcgtg agaatatcac gatggcatct
     6781 atggataaag ttgccaatca aataggtgtg atttcttacg atgaagaaga aaaagcctca
     6841 aaaactttca tcgacaaaat ggaaatcaaa accccaacga ttgagcagaa agttcaaaac
     6901 ttaagtggtg gtaaccaaca aaaagtggta attggtaaat ggttattccg tgaagcaaaa
     6961 gtgatgattt ttgatgagcc gactcgggga attgatgtcg gagcaaaata tgctatctat
     7021 caactgctcg atgagcttgc tgccaatggc gtgggtgtta tcgtgatctc ttccgaattg
     7081 cctgaagtct tgggagtttc cgaccgcatc attgtaatgc gtgaaggtag aatgacaggt
     7141 atgctcgaga ctaaaaaaac caaccaagaa gaaattatgc attatgcaac tggtgttaaa
     7201 aatatgtttg ctcgtgaata tggggtggaa aaatgaatga aaaacaaaaa gaaatgttaa
     7261 gaaaaatggc tgcattggct ggcttagtac tattaatcat ctttttcagc gtaaccaatg
     7321 aatacttctt tacctccaat aacattatga cagtagggct acaaacctct accattgcgt
     7381 taattggtat tggggcaacc tgtgtgatct taaccggtgg aattgattta agtaccggtt
     7441 cagtagttgc actctccggt gtggcagctg caatgattgt aaatgccggt gtacccgtac
     7501 cactaggaat gattttaggg attttggtcg gcggtatttg tggcttaatc aacggcattt
     7561 tagtcaccag aatgaaattg cctccgttta ttgctaccct cggtatgatg atggttgccc
     7621 gtggtttagc attgtatgtt accaatgccg caccagtttc cggaatgcct gaatcctttg
     7681 ccaatctcgg taacggagca ttatttaaaa ttgtggaaga aggggcaaac ggcttgccga
     7741 aagtggtatt tgcaggtatt ccttaccctg tgattattat gatctttatt accgtactat
     7801 tcactttcgc tctctctaaa ctgaaagtcg gacgctatct ttacgcaatt ggttctaacg
     7861 aagaagccgc acgcttatcc ggcattaaaa ccaatattgt caaaatctat gcctatgttg
     7921 ccagtggctt actctctggt ttaactggcg ttatccttgc ctcccgcctc gtcaccgccc
     7981 agccaaacgg tggggtctct tacgagctgg atgcgattgc cagtgctgtg gtgggcggca
     8041 catcgcttat gggcggtgtg ggtactatcc ccggcacact catcgggtca ttcattatcg
     8101 gggtactccg taatggtttg aatatgaatg gcgtttcttc atttgttcaa atgattgtca
     8161 tcgggcttgt gattatcgtg gcggtctctc tcgaccagct ccgccaatcc aaaaaagccg
     8221 gtaaaaaata atccactctt aaaggagaat taaaatgaaa aaatcagcat tatttactgc
     8281 gaccctcttt ggtttatcga ccttatttgc aggcagtgca atggcaaaat ctgatgaaat
     8341 cgctgtgatt gtgaaatctg ccaactctac cttctggcaa aacgtgcgta aaggggctga
     8401 aactgccggc aaagatattg gaggacaata caaagtcacc ttccaagggc cggaagccga
     8461 aacagcgatt gacgcccaag tgaatatggt ggacaacgcc gtaaaccgtg gcgtggcagg
     8521 catcgtactg gctgcctcag acccggtagc attagtgccg gcggtgaaaa aagcttatga
     8581 gagtggcatt ccggtggtgc ttatcgattc cggcatcaac agtgacggca aatactacca
     8641 atctttcctt gccaccgaca accgtgcagc aggtaaatta gcagcggaaa aactgcttgc
     8701 caaagtcaaa ggcggcaaag tggcagtgat gagctttacc caaggggcag catcagcgat
     8761 tgagcgtacc ggtggtttta ttgacgaaat caaagcaaaa gccgattaca aactggtcgg
     8821 cccgtactac tccgattcgg atatgaccaa agcgttaaac caaaccgaag acgtattagg
     8881 ttctaaccct gatcttgcag cgatcttcgg ggcgaacgaa ccgactgcgg taggaatggc
     8941 acgagcggtg aaacaaaaag gctttgccgg caaaattgta gcggtgggct ttgatggaaa
     9001 ctccgaccta caaaacttcg tgcgtgacgg aacactagac ggcatcgtgg tgcaatcttc
     9061 ctaccaaatg ggctataaag gcgtggacac catcggcaag ctgattaaag gcgagaaagt
     9121 cgaaaaagtg attgataccg gggtggttta tgtcacgaaa gaaaacattg atagcgaaga
     9181 agcgaaaggt gttctttact aacattcaag ttaaacgggg tggggttgcc caccctttca
     9241 gccgaaagga agccaatatg tcaaataccc ttaccgataa agccttagtg gtgattgccg
     9301 cacttggcgg tcgagaaaat attgtcgatg tttacgcctg tattacccgc ctacgtgtgg
     9361 aggtgaaaaa taccgacatt gtggaatggg ataaaattaa atctgtcggt gcgttaggcg
     9421 ttgtgacctc aggctcagtt attcaatcta tttttggtag cgatgccgaa gcctaccgtg
     9481 atgaaatcaa acgtattttg aatatttagc ctaagcacac tcacaacaaa agaatcgcaa
     9541 caagcggtga aatttttatc aaaatttgca aaaaaatgac gtaatttgac cgcttgcaag
     9601 ttaatcgaat tgtttaactt ttaagaagga aaatagtatg gcaaatcgtc ttatcctcaa
     9661 tgaaaccagt taccacggca aaggagcaat ccaaaatatt gttcacgaag tgaccagccg
     9721 gagtttcaaa aaagcccttg tggtaacaga caaagacctg atcaaattta acgttgccca
     9781 aaaagtcacc gccttgcttg atgccgcagg cttgccttat gagattttcg atgaggtcaa
     9841 agccaacccg gcagtcgatg tgatcaaagc gggggtcgca aaattcaaag cctccagtgc
     9901 cgattattta attgcgattg gtggcggctc accgattgat agtgccaaag cgattggtat
     9961 tatcatcaat aaccctgagt ttagcgatgt actttcattg gaaggtgtcg ccccaaccca
    10021 ccaaaaatgt gtgccgatta tcgccattcc aactaccgca ggtacagccg cagaagtcac
    10081 gattaactat gtcattaccg atgaagcgaa aaaacgcaaa tttgtgtgcg tggacgttca
    10141 cgatgtgccg gcagtggcgt tagtcgatcc agatatgatg gaatctatgc cgaaaagctt
    10201 ggctgccgca accggtatgg acgctctcac ccacgccatt gaaggctaca ttaccaaagc
    10261 ggcgtgggaa ttaaccgatg ctctacacct taaagcgatt gagctgatcg gccgttcatt
    10321 gcgtggtgca gtggagaaaa atccgaaaga tgtcgaggca atggcattgg gacaatatgt
    10381 ggctggaatg ggcttctcca acgttgggct tggcgcggtt cacagtatgg cacacccgct
    10441 ttctgcctat tacgacaccc cacacggcat tgccaacgca gtattactgc cgtatgtgat
    10501 ggaatttaat aaaaattaca ccggcgaaaa ataccgtgaa attgcccgag caatgggggt
    10561 aaaaggcgta gatgaaatga gccaagaaga gtaccgcaac gccgccattg ctgccgtaca
    10621 acagctttca caagatgtcg gcattccgcc aaaactgcat caaatcggcg ttaaagaagc
    10681 cgatttagcg gcattatcgg tcgatgcctt taatgatgtc tgcaccggtg gcaacccgag
    10741 agattgtacg gctgaggagc tgttggaggt atatcggatc gcatactaag ttctatcttt
    10801 gttaaataga caagcggtga ttttttaata aaaatttgca atttctgtta aaaaaatact
    10861 gatagtcata atgcccgatt tctcatattt atggaaaaat cgggcatttt cgttgctttt
    10921 ttatcgccaa gaaatgtgat tttgttcaca tttatatcta taaattaaca aaaataaaac
    10981 aatttgtttg caaaggcggt tcagttaccg aatgatagtc atcaacttcc actgtggata
    11041 aaaaaggagc aactcatggt gaaacaacat aaaatgtata ttaatggtga atttgtgcct
    11101 gcgttagatg gtcgcacttt agcagtctat aaccctgcca ccgaaaaagc tatctccgaa
    11161 gtccctcgtg gcggagctga tgatgccaaa atcgctatcg atgctgctga agccgcccaa
    11221 gaagcttggg aacgtttacc agcgattgaa cgaggaaaat atttacgtca aattgctgtg
    11281 gggattcgtg agcgtgccga tgaaattgct cgcactattt ccgaagaaat gggtaaaact
    11341 ctgtccttag caaccgttga ggtacatttt accgctgact acttagacta tatggcagaa
    11401 tgggcgagac gttatgaagg ggaaattatc caaagtgatc gcccaaatga acatattttc
    11461 ctatacaaaa aagcgattgg cgtcaccacc ggcattttac cttggaactt cccgttcttc
    11521 ctcattgccc gtaaagcggc tccggcatta gtaacaggta atactattgt gattaaaccg
    11581 agtgaagatg cacctaataa tgcgattctc ttttcggaaa tcgtgcatca agtcggttta
    11641 cctaaggggg tatttaatgt cgtcaccggc tatggcaatg aagtcgggcc ggaactttca
    11701 ggcaatgaaa aaatcggtat ggtttccttt accggtagcc agtttgccgg acaaaaagtg
    11761 atggaagccg ccagcaagaa tatcattaaa gtcaatttgg aattgggcgg aaaagcaccg
    11821 gctatcgtat tagacgatgc agatcttgag cttgctgcta ccgctgtagt aaattctcga
    11881 atcatcaatt caggacaggt ttgtaactgt gcagaacgca tttatgtaca gagttcaatt
    11941 aaagagcaat ttgtccaaaa attggtagag aaaatgcaag cggtgaaata tggtaatcca
    12001 ttagaacaac aagacattga tatggggccg atggtaaatg aaaaaggctt gcataaagtg
    12061 caggaaatgg tgacacacgc actgcatcaa ggaggtaatc tggtattagg tggtaacgtg
    12121 gttgaaggaa caggctacta ctttgagcca actattatcg acaatgtaga taactctatg
    12181 gatattatgc gtcacgaaat ttttggtccg gtcattccgg ttgcgacatt tgataccatt
    12241 gatgaagcga ttcgcttagc caatgattgt gaatatggct taacctcttc ggtttacacg
    12301 caaaatatca ataaagcgat gaaagtaatt tcccgcttaa aattcggaga aacttatgta
    12361 aaccgtgaaa actttgaagc aatgcaaggc taccacgccg gttggcgtaa atcgggtatt
    12421 ggcggtgctg acggtaagca cggcttagag gaatacctac aaactcaggt ggtttatctg
    12481 caatttgatg ataaagtata gattcttcta aaaactccca cttatcaaaa taagcgggag
    12541 ttttctttta ggttaacctt gtatcaaaat tgcaaacaaa aatattctaa tgttaagtaa
    12601 atgtttaata attatttatg gttaactctt tttggctaat taatttgcaa tttaaattaa
    12661 ttgagtgcag aatgccatta gccttttttg aaatcacatt ccataaaatg gcttgattaa
    12721 cacaacacaa ttatcactca aattaggatt ttcattatga gtattttcca acaaaccaat
    12781 ccaaaccgcc gtcgttatgg gctagctgta tttatcggga ttattgccgg tattatttca
    12841 gcattcgtaa aatggggggc agaacatcct ttcccacctc gtagccctat cgatctgttt
    12901 accgctgctt gcccgcaacc tgtgttagat gcaatgaatg ccgcagcaga ccaagtggct
    12961 gccaaaacca tcgcattaca agaatgttca cgtgcatttt taaacccacc acacgttttc
    13021 ttacgtgatt atattggtat cgatccaact gaagcagcat ttacctttgc tgaccacgcg
    13081 ttcaactgga ttggtgtcac ccatatgatt ttctcgttag tctttgcgat tggttactgc
    13141 attgtggcgg aaatcttccc aaaaattaaa ttctggcaag gtatcggtgc cggtatcatc
    13201 gctaatattt gtgttcacta catcaccttc ccggcattag gtttaacacc accggttgct
    13261 gaatggccgt tatatgaaca catttctgaa ttagttggtc atattttctg gttctggacc
    13321 attgaggtga ttcgtcgcga tttacgtaac cgtattacgc gtgaacctga tgccgaagtg
    13381 ccgttagatc aaccgttccg ttaatttaaa attagctcga tttatacaaa agccgcaatc
    13441 acgttgcggc tttcttattt tacaagcggt caaattttca tgaaaattta ccaaacaaaa
    13501 agcacattgt ttcatgtagc aatgcggagc ttggctttat aagaaaaata caccaagttg
    13561 gaacagtttt tcaatttcat cgatctgttt cttatcgttc acaaaaataa tcacacggtc
    13621 attttctgca atcatggtgg atttgtgggc gataataact tcttcgcctc gcaccaccgc
    13681 cccaacaatt gccccttgcg gtagttttaa ttcacggatt tgtcgtccaa ccacttttga
    13741 agtggttgca tcgccgtgag cgataatttc taccgctcct gcaaccccaa gtttgagtga
    13801 agaaacttgt aaaatatcgc cttttctaac gtaactagcg agagcagaaa tagtagcttg
    13861 ttgtggggaa atggcaatat caatagtgcc accttgaatc aggtgtaaat aggcagggcg
    13921 ttgcactaaa ataatcactt ttttcgcccc aagccgtttt gccagcaggg cggacataat
    13981 attcgcttca tcatcactgg tgacggcaag gaataaatca atattctcaa tatgctcctc
    14041 aaacagcaac tcttcatcgg aggcatcacc ggtaagcacc atcgttttag atagtttttc
    14101 tgctaatttt tcggctcgaa ccggattgcg ttcgataatt tttacccgat actgatcttc
    14161 taaatcccga gctaacgaag agccgatgct ccctccaccg acaatcataa tccgcttatg
    14221 tgggcgatca agccgttgta gttcactcat tactgctcga atatgttggg ttgcacagat
    14281 gaaaaagact tcatcacctg cctcaataat agttgaacct tgtggcacaa tcgctttgtc
    14341 ttggcggaaa attgccacga cccgagcatc aatatgcggt aaatgatcac gcagggctga
    14401 aatcgggtaa ccgaccaaag gcccaccgta ataggctttt acattcacga tactgactaa
    14461 ctcatcagca aaatgagtaa tttgcaacgc ccccggatag tgaataaggc gtaaaatatc
    14521 ttctttgact aaaatttcag gggcaataat atggtcaata ggcaatacat catcattaaa
    14581 caaccgctct cgttctctca cataatcagc actgcgaata cgggcaattt tggtcggcac
    14641 attaaataaa gtgtaagcaa tttggcaagc gatcatattc acttcatcac tattagttac
    14701 agcaactaat agatcagcat cacctgcacc ggcatcacgc aaggtttgag gtgaagcata
    14761 ttcgccccga atcacctgta aatcgtgttt atctttgagc ttgtctaaac gagttgggtc
    14821 attatccacc aagacaatat cattgtcttc actcaccaaa ttttctgcca gcgtagaacc
    14881 aacttgtcct gcccctaaaa taattacttt cattactctg ccactttttg tagttttgcg
    14941 tagaagaaac catcaccacc gtttggttgt gggaagaact gtttttctaa cactttttcg
    15001 ccgttaaaat cgatttcaag ttgttttgca ttcggtgtat cttgtaaaaa ccgttgaatt
    15061 tgctcgctat tttcttgcgg taacaccgag caagtggcat ataacaaaat gccgtttggc
    15121 tttaaccttt gccataacgc cttgagaatc tcaccctgta atgtggctaa ttctgcaata
    15181 tcaccctctt tacgcaacca tttaatatca gggtggcggc gaatgactcc ggttgcggaa
    15241 caaggggcat caagtaaaat gcggtcaaac agcacaccct cttcaagcca ttcctcaggt
    15301 ttggaagcat cgccacaaat tacctgtgca atctgcccca gtcggactaa gttttcacgc
    15361 actcggctta aacggctctc ttcaatatcc aacgccataa cctttgcttt cggtgctttt
    15421 tctaaaatat gggtagtttt gccacccggt gcggcacagg catctaaaac ggtttcacca
    15481 ttttctgccc cgagcaactc cgctgaccat tgtgcgtgag catcttgcac ggttgcccaa
    15541 ccttgctcga aatgtggcag ttggttcaca tttaccgctc tctccagcaa taaagcacac
    15601 tttggcacgc aagcggtcgg attttctgaa ttttttgcaa attcaggctc aaccagctcg
    15661 ctaatcaacg ccgcataatc attggtcttg atatgttgtt gattgactcg aatccacatt
    15721 ggtgggcgtt ggttgtttgc ttcaacaatt tctcgccagt tcggataggc ttttttaagt
    15781 ttattgacca accattcagg gtggagcgtt tgccaatgtt tatctacctt cgctaagatt
    15841 tcttcttgct ctcgcagaaa acggcgtagc acaccgttag tcaaggctcg gaagctatcc
    15901 agttttagcg ttttagttgc attcactacc tcatcaaccg cagcgtgtgc cggcactcgc
    15961 atataaagca gttggtataa acccactaac agtaagcaat gcaccaaacg ggttttgcct
    16021 ttcagcggtt tttcaactaa taatttgatg atcgattcca agcgaggcag cacacggcac
    16081 actccgaagg tgatttcttg cactaagggt aaatcttttg gttcaagctg tttttgagcg
    16141 tcaggaatca aggtggaaag tgatttacct tgatctaaca cctgtaaaat aatggttgca
    16201 cttattgctc tagaagaaag tgctttgaac gattgttttt tcataaataa aaatgccatt
    16261 ccgacagaat ggcactattg taactgaatg cgggattatc ttaaaactaa aattggcttg
    16321 gtggtgttgc gagccacttt aaccgtatta gagcttaagc ccttcgcatt tggtttgctg
    16381 cttgccagca tcataattaa atccaccgac ttttcatcgg caatacggca aatttcttca
    16441 taaatcgtac catacgccac aatgtgctgc acttttgaac cttcaggaaa atggtttttg
    16501 gtaaattcgt gcaatttttg gtttgcttca gccaccactt ctttatcgaa atttttcggc
    16561 aagaatgcag aaattaagct gttatccacc ggctcaataa tagacacaac ccgataaacc
    16621 gcattcggat tttttgccgt catttgtaat gccgtatcta ccacatattt agcacttttt
    16681 aggtcggcta aatcaatcgc aataagtaat ttgttataca tatttattcc gtaggggcag
    16741 gtcctgtgcc tgcccgaata ttaactaaaa tagcggacgg gcacaggacc cgtccctaca
    16801 tagcatataa atactatgca ataacacact gttttttcac tctacggcgt tggtttgcca
    16861 caataccaaa taccaacaat agagcaggaa tgaagatcca atctttagaa ggagcatctt
    16921 gcggtacggc aatgtagtga atggtttgat cccagtttaa gcctgcttta gctgccggag
    16981 aatccatttc taccatatca atcaccactt ttggtgtttc tacgccatca actttgattt
    17041 tttcatcggt ttgaattagc gttaagccta agtttttcaa acgctcttcg ccggttgctc
    17101 cttccggtac aggtaattga gcgtagaact caatttcttt accgtaaggg tttaatccct
    17161 ctacttttaa agtaacattt tgacctactt tgcttgcaag caactgttct tcaaactgca
    17221 ccggctcgat atgacgttca gacggataaa ttctgtccat aaagaagccc ggacggaaca
    17281 aggcgaaagc ggctacaacc agcaacgccg tttcccacca tttgttttta gtcacaatat
    17341 attgcattgt agcagaggta aaggcgagaa ccccaacagt tgcggtaata aacacaaccc
    17401 agccgtgccc cggataacgc agatcaatta ataataaatc ggtattaaaa ataaataaga
    17461 acggtaaaat gacggttctt aaactatatt taaatgccac cataccggta ttaatcgggc
    17521 taccgcctga aattgctgcc gcagcgaacg aggctaaacc aacaggtgga gtcacatctg
    17581 ccataatccc aaaatagaat acgaataaat gcaccgcaat caacggcacg attaacccgt
    17641 tttgacgacc gacttccatg ataaccgttg ccattaatga tgacaccaca atgtagtttg
    17701 cagttgtcgg taagcccatt cccaaaatta agctgaatac ggctaccaag atcaacatta
    17761 gcacaatgtt gcccattgat aggagttcaa tcacacttga aagctgaacc ccaaagcccg
    17821 ttagtgccac aacgccgaca ataatccctg ctgttgcggt agcgagggcg ataccggtca
    17881 tattacgacc gccagcctca aggctatcta ccacatctcg aacaccttgt ttgataatct
    17941 ctttggttac gctctcttta cggaagaaat tcagtaacgg gcgttgggtt aattgaataa
    18001 aaattaaggt aatggttccc cagaatgcgg ataagcccgg cgaaagcatt tccaccatta
    18061 agcaccaaag tagcacaacc acaggaataa ggtaatgtaa acctgcattt acggttggtt
    18121 ttctttttgg tagagaaaca atttctgagt ttggatcgtc cgcttctaaa tcagggtagc
    18181 ttgccacacg gcgaatagcc agtagatacc ataagcctaa gaaagcacag acaatcataa
    18241 acgcataatc ttctgccaca tcacgaatcc aacctaagcc gtagtaaacg ccaatcgcta
    18301 atcctacgat cactaaaatt gaagctacgg ttcttagcaa gaagactaaa atcgggcttg
    18361 gctcttcggc tcttggtaag ccttgtaaat tcatcttaca agcttctaaa tgcacgatat
    18421 acaccaacgc aatatacgaa attaacgcag gtaagaaggc gtgagtaatc agctggctat
    18481 acggcatatt cacatattcg atcatcaaga acgctgcagc ccccattacc ggtggcataa
    18541 tttgaccgtt tactgatgag gcaacttcca ccgcaccggc tttttctttg gtaaagccga
    18601 cccgtttcat cattggaata gtgaatgtac ctgtcgtcac gacgtttgca atcgaagagc
    18661 ctgaaatcaa gccggttaaa gcggaagaaa ccaccgccgc ttttgccgga ccaccacgca
    18721 aatgccctaa ataggcaaag gcggttttaa taaagtagtt acctgctcct gctttatcga
    18781 gcaacgcccc aaataatacg aacaggaaca catatttggt cgaaacccca agggctacac
    18841 caaacacgcc ttcagtggta atccattgtt ggttgataat ttgagaaagc gaacctgagc
    18901 ggtggcttac aatccaatct gccgggaaat attgcccgaa gaagttatag atcaggaata
    18961 caatcgcaat aatcacaagc ggtaagccaa gactacggcg ggtcgcttcc agcaccaata
    19021 aaatccctaa acagccggcg ataatatctt gcgtatttgg cgctccaaaa cgtttcacca
    19081 aaccttcata gaagaaaata taatacaacg ctaacccagc tcctacgatg gcaaacaccc
    19141 aatctatttt aggaatatga tgtttaggcg agctggcaaa agcagggtaa gataggaacg
    19201 ccaagaacat tgcaaaggct aagtggatag aacgggcttt ggtgtcgtcc accaccacat
    19261 tcaaattaat gcctgcgtga gtaagccatt cttggaatac aaacggcaat ggagaagcat
    19321 aataaatttg gaacacagac caaagaatgg cgacatacac aatggctttt ttcgcaagac
    19381 cggacggggt tcgcccccca ctgtcattgg aggcaaccat atcttgtagg tcatcgtaat
    19441 caaccttaga ttcaactgac ataaagactc ctcaaaacgc aagcggtcat tttcttatta
    19501 aattttacaa atttcctcaa aaaacaaccg cttgctcgtg aaaacactgt tgataagtta
    19561 tcaattaaag gtgaaaatcg ataacttatc aacagtttca aaaaagcaaa aaaccagcac
    19621 gctaaaaaac gtgctgattg aatcaaatta cagaaaggaa atattactta atccaacctt
    19681 tctctttata gtaacgaatt gcaccttcgt gtaacggagc agaaagggcg tttttgatca
    19741 tctcttcttg ttttaagtgt tcaaacgccg gatgtaaacg tttgaaacgg tcgaagttat
    19801 caaataccgc tttggttaca ttgtacactt tatctgcatc cacatcggca gaagtcacta
    19861 acgttgcata tacaccgaag gtttctgtcg gctcatccga acctttatat aaaccgcccg
    19921 gaatcgtagc tttggcataa tatgagtgat ctgccactaa tttatcaatt tcagggccgg
    19981 ttaccggcac taatttcgca tcgcaagaag cggctgcttc ttttaacgca ccattcgggt
    20041 gacctacgtt ataagtgatg gcatctaagt tgttatcaca cattacagat gccatttctg
    20101 ccggtttcaa ttcagaagcc actttgaaat ctttatccgt ccagcctttt gccgctaaaa
    20161 tcacgttcat tgttgcacga gtaccggaac ccgggtcgcc cacgtttaca cgttttgctt
    20221 ttaaatcatc gaacgattta atgcctgaat cggtacgagc cattactgta aacggttccg
    20281 ggtgaagcga gaaaatggca cgaattttat cgtttttctt accttcaaat gagcttgagc
    20341 cgttataggc gtggtattgc cagtctgatt gtgcaatccc catatccatt tcttttgctg
    20401 caatcgcatt taagtttgca accgatgccc ctgttgaagg agcgttacat tttaaacctg
    20461 tttttgctga atcacggttt actaattggc aaatagattg acccacaaca taataaacac
    20521 cggtttgacc gcctgttccg atagtcacaa atgtttcagc cgcttgaaca gatgctgttc
    20581 ccatcacaag gcttgcaagg aaagaaagtt tgactaattt tttcattttt aactcctaaa
    20641 attaaggatc agaaaacaaa gatttattgt tttgagccac tgctcacact acaagagata
    20701 caaaacttct ttgagttgca tttgcctctt agagcttgtt tttagcatag attttataat
    20761 tagtaaattt attttttcgc ataaaaaaat ctatgcctaa tgccacaagc taaaatgttt
    20821 cactatctct taacaaatgc acatcgcctt ttcgtcttaa aaaaccgcta cgatcaaaat
    20881 attcaattaa ttgtaccgtc aattttcgcc catactgcaa ctcatctcgc aactggttca
    20941 ccgaaatgct gccgttttgg gcgataaaat ctttaattaa cgttgcaaat tgcccgattt
    21001 gttcgcttaa taaaaatcta tctttgacga ttgggattaa atagcccaat ttcccgactt
    21061 tatacagcaa attccgcatt tgggtttcat caatcgagag ctggcttgca atatccctca
    21121 cccaaagagc ttgattggtt gcctcaaaca gcggtcgaat ttgttgccaa atttgcaatt
    21181 catcggcgtt caattcgatt cgatgttccg gcaaatgtaa ccaaccacga ctattgacca
    21241 aggctttttg ctccaccaaa tcctcaataa attgatttgc caagttttca ggcaaatcca
    21301 ataacgctat gcgatataaa cgagctttgg tcacgccgat ttgatcttga tgttgcaggt
    21361 ggtattctgc cattttttcc aacacccgtt gctgggcttg agctttaaaa tccgaattaa
    21421 ataaccattt agacgagaca tcaaacccca gttttgcaat atcctctgca aaacattgct
    21481 ccgcccataa cagcaaggat aaatccatcg ctctgttttg cagatagaga tcaaggcgtg
    21541 tcgcaaagtc attacaagcg gtggtttttg ctaaattttt taccaaagct aaacgggctt
    21601 cggtacgttt atgccgtttt ggtgagtgaa tttccagcac ctccgctccg gctaacgtta
    21661 ggctgtcatc accgctgcgg atgatcaact tatcaccaac ggcaatatga agtggttcat
    21721 ctaaaatcac ttctgcaaaa aattgctgat ttttgaccgc ttgttgcccc tcaagcaaat
    21781 tcaatttgcc ggtaatgtgc gaagcaaaat ggtaaagatg cacaatgctg ttttctttga
    21841 aggcttgatt ggcagtgagt tgaaccgtaa tgcgatcggt ggcaaatttc ggctcaagct
    21901 cggtaatcca atcgcctcgc ttgatttcct ctttttccac gttagcgata tttaacgcca
    21961 aacgttgccc tgccactccc gtttccgaag gcgtattttg ggcgtgaatc gctttgaccc
    22021 gcactttttt accattcgac aaaaataact cagagccaac gctcactttt cccgccaccg
    22081 ttgtgccggt aacgaccaac cctgctcctt tcacattaaa cacacggtca atcgcataac
    22141 ggaacggttt atgggtttgg gtatgttgtt gatttaattg aattaaatgt gcttttaatt
    22201 cttcaatccc ttgttgcgtt tttgccgaag taacaaaggt ttttgcttcc gctaaaaacg
    22261 gatagcttgt tttcacttgc tcaattaagt ggctgatttg agtttcttcc gcccgatctg
    22321 ccttagtaat cacaatcata atatgctgga aattcagcag gtggagaata tccaaatgct
    22381 cttcggtttg tggcttaatc ccttcttcgg cagaaatcac caacagggcg tgttgaatgc
    22441 cgccaagccc tgccagcata ttagataaaa aacgctgatg acccggcaca tcaataaacc
    22501 ctaaaatatc gttctcaatc ggtaaatagg catagcccaa atcaatggtt agcccacgtt
    22561 tttgttcttc gggcaaatgg gcggtgttag tgccggttaa ggcttgtaaa agcgatgttt
    22621 tgccgtggtc aacgtgaccg gcggtgcaga tgatcattga tagtccttat aaaaatgagt
    22681 aactattctg gcgagcagat ttaaaatcta caatatagac attttcctga ccaatcagga
    22741 actttacttg gtacttaccg tttaaaatgg gaatttcttt tttcttgcga agtcgataaa
    22801 catcggcagt aaaggaaagt ttatccactt cactttttat tgcatcataa aattgttctg
    22861 caataatcgg gttttgggat tgttgtaata tataatctgc ttgataaaac aattttattt
    22921 ctgctttctg tagccaaaca atattgtaat caaacttcat catttttccg tgattcccaa
    22981 ttttttgcgt aaatcttcca tcacctgagc gtgggattta gtttcaatta agccattttc
    23041 taattgatgt aataaatcaa gttcatcatt agtataaaaa ctttgtggct tatctgtgcg
    23101 taattttgct aaatcttgtg cgagtatgag ttccatattt cccccttaca aacttagatt
    23161 attcaatatt gtaacctgat aaaactaaag ttcaaggagt gtatttaagg cgataaccgc
    23221 tcttttttcc actcattatt ttccaaccaa taatgaatgc ggtcgtgtag ccggctactt
    23281 ctgccttgcc agagttcaat actgtcggga atcagaatat agccacccca atgcggtggg
    23341 cgaggcactg aaagtggata tttcaatgca aattgagctg attttagcaa caaagccttg
    23401 tagttttcga taggctgact ctgctcgctc gcccaagccc ccaaacggct ggtgtaagga
    23461 cgagagtcaa aataggcatc ggattctgcc tctggaattt ttgctatttt cccttcaatc
    23521 cgcacttgac gttgtaattc tgcccaaaag aaggttaaac atccaaaagg attatcggca
    23581 atttcccacc ctttacggct ttgataattg gtaaagaaca caaagccttg tgaatttacc
    23641 tctttcaaca gcaccattcg gctacttggt cgcccgtttg ctgcaacggt agcaatattc
    23701 attgctgtcg gctcattcac tttggcattg attgcctcac tcaaccattg ttcaaattgg
    23761 gtgattgggt ttgagtgaca atctcggatt gaaagcactt ttttggtgta atcttctcga
    23821 atgtggtgca gatccataag gattccttta tcttattcta aataatcgga caggcacagt
    23881 ctgccctacc aaaattaata ttccaacatc tcaatcaact tatcaaactc cgcgaccgag
    23941 cgtaaatcta accaaaattt ctgctgagca aaacgcccga taatcgggct tgggtaggtt
    24001 ttaaattgtt gttccaatgc aattaaatcg ctctgttttt cagcggaaat agtcactgcc
    24061 accgaaggta aggtttctgt gggtaacgca ccgctgccga tttgagcgag gcttagctca
    24121 atttgcaaaa tataagcaga atttaaccgc ttgtgtagtg cctgttttaa tcgctctgct
    24181 ttgtgttgca aggtttcaag cggttgagtg agtaaatgaa gagtcggcaa gttatcggtt
    24241 aattgctccg gaaataagta gtggcgtagc gttgcctcaa gtgccgataa aatcacttta
    24301 tcgcaacgta gcacccgttt tagcgggtgt tgttgcagtt ggctaatcat cgcttggcta
    24361 ccgacaataa tgccggcttg cggcccgcct aataatttat cgccagagaa ggaaaccaaa
    24421 tctaccccag ccgctacttt ttgctgaacc tttggctcag caggcaaatt aagagcttgc
    24481 atatcagtta gcgaaccact gcctaagtcg gtaatcacag gcaggttaaa ctctttaccg
    24541 agagccacca attcctcttc cgacaccgaa ctggtgaacc cctcaatgtg gtagttactg
    24601 gtgtgaactt tcattaaaaa ggcggtattt tcggtgatcg cgttgcgata atcctttaaa
    24661 tgagtgcgat tagtcgtacc aacttccacc aatttgcaac cggcttgagc cataatatcc
    24721 ggaatgcgga atgccccgcc aatttccacc agctcgccac gggaaacgat gacttccttg
    24781 ccttgtgcga aggttgctaa catcaacaac accgctgccg cattattatt cacaatgcaa
    24841 gcggcctccg ctccggtaag tatttgcaac aactcggaaa tgtagttatc tcggtgcgag
    24901 cgcttgcctg cttcaatatc aaattccaac gccacattgt ttcgcattgc gttggttgct
    24961 gcctgtatcg ccttttccga ccacaaccca cgccctaagt tggtgtgtaa caccgtaccg
    25021 gttaagttga acacggaacg gattttcacc tcactcaacg cttgcacttt ttgttccagc
    25081 cttataaaaa acaggttttc atcggcaata aaatccggca aggcttgctg ttgggaaata
    25141 aattgacgtg cttgagtaag caaactccta gcttgttcag ccacgctgga atatgcaaat
    25201 ttttggcata attcgaccgc ttgtggcttt ttcaacaaga ggtcgagcga gggaatttgg
    25261 cgaaatagtt gttgcataat gtgaatgatt gagagaatat tttggacaat tctaataaat
    25321 aaagtacaat attgccaatt tttcggaagt gcgtcatctc cggtgaggtg gcaggacttc
    25381 aaatcctgtt gaggacgcca gcgttctcgg gtgggttcaa ctcccatgca cttccgccac
    25441 a
//
LOCUS       DANLRW010000027        24850 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.027, whole genome shotgun sequence.
ACCESSION   DANLRW010000027 DANLRW010000000
VERSION     DANLRW010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24850
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.027"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(111..2300)
                     /gene="yccS"
                     /locus_tag="PXA71_000899"
     CDS             complement(111..2300)
                     /gene="yccS"
                     /locus_tag="PXA71_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HDL5105028.1"
                     /translation="MNKFLRYLQHSWLSENVIKTLPMFISLNIAAVSIWQLGISDFAM
                     PLMLGIIAGGLVDLDNSLIGRAKNLIISLVAFSLSSIGASVSLHLGWLFVPVAVVCTF
                     LLVMLGAIGQRYSTIAFGTLIVAVYNSLAYTPEVLWYHNVVMILLGTLLYGLVGILVY
                     LIFPNRTVQENLASAYLALSHYLLAKSAYFDPDDDDLAAKQLALAKANSEVMAAFDKT
                     RVALFYRLSRQHKQQRTQRMLRYYFTAQDILERASSSHYQYHELFQQLSNSDLMFRFQ
                     RVLELQAAACQKIAMSLRHREVYEHGVRGEKALQGLLNSLNYHQERGLKSAYRWRAIA
                     ENLGNIERQLAQIEQGSSSGEHIEPLSKNFTKSHRLIAENITGLSNISQAIKAHLTFE
                     SQLFRHAVRLSIVVLLCSAIVPILGFDSKGYWILLTAIFVCQPNYTATKTRLIQRVIG
                     TIFGVLVGGSFELFNVALSLEAQLGLIVLTGSLYTFFRLVHYGFSTFYITVLVMISLD
                     IAGVSLESGILMRMLDTLLGTAIAWLAVAFLWPDWKYLNLQRNLHNGLKASGQYLRHI
                     IAQLQFGYNEQLPYRIARRDVHNHLSALSNAITNMYSEPQKYANDLTFAPKLLGIAYT
                     LLGYISTLGAYRIASREINQQVDFSAMFFSHAREVANIIGQIASESRSFAKLSEKLTA
                     IDQDLTQFEQENQQKQNDLALVLIQQLRLIVQLLPQLNSILQLKSVR"
     gene            complement(2344..2802)
                     /locus_tag="PXA71_000900"
     CDS             complement(2344..2802)
                     /locus_tag="PXA71_000900"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HDL5105029.1"
                     /translation="MKTTVRTIAKQKQIALVAHDSCKQDLIRWTQTHQAQLASHKLYA
                     TGTTGHLLARETGLEITSLLSGPMGGDQQLGGLIAEKKIDLLVFFWDPMNAAPHDPDV
                     KALMRIATVWNIPVAINETTANFLLNADLFNQAISVNVPDYDGYLAERLG"
     gene            2928..4202
                     /gene="thrC"
                     /locus_tag="PXA71_000901"
     CDS             2928..4202
                     /gene="thrC"
                     /locus_tag="PXA71_000901"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDL5105030.1"
                     /translation="MNLYNIKHPEEQVNFAQAVRQGLGKNQGLFFPEVLPKLDSIDEL
                     LDLPLVKRSQKILSALIGEELPQETLNAMVKNAFTFPAPLAKVNDDIYALELFHGPTL
                     AFKDFGGRFMAQALANVRGDGKITILTATSGDTGAAVAHAFYGLENINVVILYPKGKI
                     SPLQEKLFCTLGGNIRTVAIESDFDACQALVKQAFDDAELRQAIGLNSANSINISRLL
                     AQICYYFEAVAQLPKEKRDNVVVSVPSGNFGNLTAGLIAKTLGLPIKRFIASTNANDT
                     VPRYLQSGKWEPNATVATLSNAMDVSRPNNWPRVEELFKRNGWSLSELGSAALNDAET
                     EAALKAQYAEGYLCEPHGAIAYQSLKDQLQQGETGIFLCTAHPAKFKESVEHILAIEL
                     PLPEALDKHNKLPLLSDEMAADFATLRAYLLK"
     gene            complement(4281..5015)
                     /locus_tag="PXA71_000902"
     CDS             complement(4281..5015)
                     /locus_tag="PXA71_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDL5105031.1"
                     /translation="MSFKDMTGQKVPSVTFRTRQNDAWVDVTTDELFNNKTVVVFSLP
                     GAFTPTCSSTHLPRYNELACEFKALGVDDIICMSVNDTFVMNAWKADQESENITVIPD
                     GNGEFTEGMGLLVDKNDLGFGKRSWRYSMLVKNGIVEKMFIEPQEPGDPFKVSDADTM
                     IKYLSPNWTAKESVSIITKPGCLFCAKAKALLKEQGYTFEEIVLGRDASTISVRAITG
                     KTSVPQVFIGGKYIGGSDELAAYFAK"
     gene            5130..6014
                     /gene="oxyR"
                     /locus_tag="PXA71_000903"
     CDS             5130..6014
                     /gene="oxyR"
                     /locus_tag="PXA71_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HDL5105032.1"
                     /translation="MNIRDLEYLIALAEHKHFRRAAESCNVSQPTLSGQIRKLEGELG
                     TILLERTSRKVLFTQAGLTLVEQAKVVLREVKILKEMASNQGKEMSGPLHVGVIPTLG
                     PYISPIIVPALKAEFADLELYIYELQTNQLLDQLESGQLDCGIISFVKESESFIEVPI
                     FNEEMYLVVPEQHEWAALKKFDMNLLKNRELLFLDSGHCLRTNTLDYCLSIGAKENPH
                     FKATNLETLRNMVAANVGLALIPKLAAKPIKGVHYIPLENPKPFRAVGMVYRPGSPLR
                     ARYERLAQAITKIMQSEA"
     gene            6017..6649
                     /gene="fabR"
                     /locus_tag="PXA71_000904"
     CDS             6017..6649
                     /gene="fabR"
                     /locus_tag="PXA71_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HDL5105033.1"
                     /translation="MANGMSVRAIQKEKTRRALVEAAFNQLSSEKNFSNLSLREVARE
                     AGVAPTSFYRHFKDMDELGLAMVDESGLLLRQLMRQARKRIANGGSVVVVSVETFFEL
                     IADRPNVFQLLLRESSGTSQAFRTAASREIQHFVAELADYIMSKDNHSNRELAYIQSE
                     GLVTLVFTAGSHALDMNNQEREKLKQRVIMQLRMLIRGSTYYANKQASST"
     gene            complement(6676..6975)
                     /locus_tag="PXA71_000905"
     CDS             complement(6676..6975)
                     /locus_tag="PXA71_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4298 domain-containing protein"
                     /protein_id="HDL5105034.1"
                     /translation="MKKADIQKMQDCYNQWVELLPELEKGIEQWKRASALLEPLSRFY
                     ASPEWRELHDSFDEQLDTKGNYSILSEDALWNALSEHHQLALEWLKLSTAYITKE"
     gene            complement(7064..10879)
                     /locus_tag="PXA71_000906"
     CDS             complement(7064..10879)
                     /locus_tag="PXA71_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YadA-like family protein"
                     /protein_id="HDL5105035.1"
                     /translation="MKGSGLATVGAPETGDNGQTIYTVDVAKAGAPTVTRGNVADAIN
                     NSEKTSSVVAGSKAVTVKAGKEDDKGNTEYTVDVATDKSIGRDNDGNMTVNTDNVTIV
                     KDPTTGEVKANTTTLNNSPEGKVTEPTGDDAKKLVTAGDIANAINNSGFNVTAGDGVD
                     GGETKGKKTQLIKPSETVTFDAGKNMTLTQADGKFTYTTKDNVAFNSIDMSNGKPDTT
                     GSITNLKSGVGGTFADKAAPTDAERKAIADNINNATGDTLNNAVNVGDVQAAMKAATT
                     KVEGDKGVTVTSKTNDDGSTTYTVEAKTDGTTIKVNDKGEITANTSELTNNPDGKVEE
                     PTEPNALVTAKTVADAINNAGFNIKANGDEKSLVKTGDTVQFLNGKNIEITRDGNNIT
                     VSTAKNVNFDSVQFGNEGPKITNNGGNINVGDKDGNAVKVTNVAAGDVNADSKDAVNG
                     SQLYTFAMASREEVKSTDKSVTVNTTKNADGANVFDLSVNTDDVTIVKDPTTGAIKAN
                     TTALNDANNDGRIDEPTADDAKKLVTAGDITNAINNSGFTLKTSAVEGGEKLSGGDEL
                     INPGKAVEMVAGKNLTVKQEADGKVIYATKDDVKFSSVTSNTVTVPTDEADPANNPIT
                     INKDGINAGNKAISNVASNLIPVTADDKVQPADNNPTNLADKLSNAATLGDVLNAGWN
                     LQGNGKAVDTVVHNDTVDFINGKGTTVTVENKDGKNTIKVDSPIEFVNQDPTDSSTPS
                     NTAKFTGEAPVQLGNVASSVRNEDGSTPEGKDRAEAIKNAEGDKLNNVVNLGDLQAAT
                     NAATTKVGGNRGVTITPSTNADGSTTYNVEAKTDGTTIKVDNEGNITANTSELGNNED
                     GTVKAPTQPNALLIAQTVADAVNNAGFNIKSAGNKAAGDQAATKLVKTGEEVVFEAGD
                     NLTVKRDGNQFTFATAKDVSFNSVQFSENGPKITNDGDNIKVGDKDGKPTKITNVADG
                     DISPVSTDVINGKQLNNYAKVNGNNIGTDEDGSINIVNGNGTTITSDKAGEVKVNVNI
                     TDLTVADNGKINVQDPNGTGSRFVNATTVANAVNNVSWNVDSKAVGTGAVEGDKAPAK
                     VKAGSTVSVNAGNNIKVTRKGSDVTVAVSDTPEFTSKTGDTLVNNNGVTINNGSAGKA
                     VSLTKDGLNNGGNRITNVKAGEADTDAVNVGQLKGAVNHLNNKIHRNNREARAGIAGS
                     NAAAALPQVYIPGKSMVAAAGGTFKGENALAVGYSRSSDNGKLILKLQGNANSRGDFG
                     GGVGVGYQW"
     gene            complement(10842..11327)
                     /locus_tag="PXA71_000907"
     CDS             complement(10842..11327)
                     /locus_tag="PXA71_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105036.1"
                     /translation="MDTGSITVDNTTGAVTTPAEEDKVATTKTVSEAIQKAGWNAKSG
                     GNKADGDQEAAELINPGEKVIFAAGDNLKVKRVGTIFTYETAKDVKFDSVTFGDNGPK
                     ITNKDGNVNIAGNDGNPTKITGVKAGEADTDAVNVSQLKQAAASQNRSERFRFSNCWC
                     T"
     gene            complement(11336..13495)
                     /locus_tag="PXA71_000908"
     CDS             complement(11336..13495)
                     /locus_tag="PXA71_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5105037.1"
                     /translation="MGARATSANAIALGTDTAATGNRATAFGAGALATGNRSTVMGWR
                     SAASGTRSFAMGSGAMGDKSVANATYSLALGSSANANATSTATRGTAIGYNATVSGVN
                     ATALGVSAVSSNQSTVAIGDSAKASAGFAIALGSGANVALNNSVALGSNSTVSNAVAV
                     PSATVNGITYSGFAANTTAAGNVVSVGSNTIKRQIQNVAAGQISATSTDAINSSQLYM
                     AMNATGNLANSTKNILGGNATVKPDGSVTYTNIGGTNKNTIEEALKAVKTEVVAGSNV
                     NITNATGANGQTIYTVNAYNTTANSSSPDYITVTGKAATAANTTNYEIGLTKKAIDDF
                     TKDTQATVVSNDGTVTVKSTERNANGTVIYDLSVNIPAQASQIQYFSVNSTVPENQAN
                     DGAKSRNSIAIGPNATATGGEQAAVALGTNSNANGNGALSLGVATVSKGIQATAVGHS
                     ANATANGTTALGRQTNATAGDATAVGSNANATAEKASAFGVAANASANASLAVGANSI
                     ASAQSAVAVGTRANATAQFATALGMGAQATLNSSVALGSESVVRAATPTENATVGGIT
                     YNGFAGVNKDTNYVVSVGSAGKERQIQNVAAGQISATSTDAINGSQLYMAMNATSNLA
                     NSTANNFGGGSVVNPDGSVTQPKYNVTNAAGTQYGNTATNVGDAITNLNNYVNQGFNI
                     KDNAGETKGTVTPNESVQFVNGKGTVSNVTQEADGVK"
     gene            complement(13724..13924)
                     /locus_tag="PXA71_000909"
     CDS             complement(13724..13924)
                     /locus_tag="PXA71_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ESPR domain-containing protein"
                     /protein_id="HDL5105038.1"
                     /translation="MNQIFKVIWNQATQSWVAVSELQRAKGKTKSVSSASKATLALLA
                     GASAVLGANDAVAVVSYRFNNK"
     gene            14288..15442
                     /locus_tag="PXA71_000910"
     CDS             14288..15442
                     /locus_tag="PXA71_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HDL5105039.1"
                     /translation="MNQFFPLIFSLTLFSGVTLALEKAPRTMPTEGINKPLLGQILFF
                     DNMLSHNGSQNCSSCHNPDYAFIDNRTTPAKGVVSQGDTPTKFGKRNSPTMLYAKYSP
                     EFHFDEQSQEYIGGQFWDGRAKNLAEQAGMPPIDPNEMGMPNKLEVAKRLYNVPMYQR
                     FLGQFYGEKVWESYESVYAAMEDAIATFQQENKLLAPFDSKYDLFLKGEVQLTALEEK
                     GRALFFNKAQTNCSSCHQLQSAANHQEETFSNYHYYNVGVPGNPDLIAVNGFAPDFVD
                     LGLFENPNVKGDETQKGKFKTPTLRNVAVTALYMHNGVFKELKTVLLFLDSYNNPERK
                     INPETGTAWQQAEFEPTIAHQKLKAKPLSDEEIDALEAFLKTLTDERYRK"
     gene            complement(15490..16479)
                     /locus_tag="PXA71_000911"
     CDS             complement(15490..16479)
                     /locus_tag="PXA71_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5105040.1"
                     /translation="MNDLIIYNTEDGKSNVALLVVENEAWLTQNQLAELFDTSVQNIS
                     EHIKNILKDKELDENSVIKDYLITAQDGKNYQVKHYSLEMILAIGFRVRSPRAVQFRK
                     WANSTLRTYLEKGFLIDSERLKNPQGRLDYFDELLEQIREIRASELRFYQKVRELFKL
                     SSDYDKTDKNTQMFFAETQNKLIYAITKHTAAELICQRADATKMNMGLTSWKGKVVRK
                     GDIVIAKNYLDNNELDSLNRLVMIFLESAELRVKNNQDLTLGFWRRNVDMLIEFNGFS
                     VLGNGGTITHKQMESFVREQYEKFDIQRKCLKQKEADWEDLQALEKLESELTR"
     gene            complement(16639..18003)
                     /gene="mpl"
                     /locus_tag="PXA71_000912"
     CDS             complement(16639..18003)
                     /gene="mpl"
                     /locus_tag="PXA71_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HDL5105041.1"
                     /translation="MKKHIHILGICGTFMGGVAMIARELGYKVTGSDTNVYPPMSTFL
                     AAHGIEIIPNYDVAQLQPAPDLVVIGNAMSRGNPCVEYVLDNQLNYTSGPQWLHDHLL
                     KDKWVLAVSGTHGKTTTTGMLAWILDQNGIDTGFLIGGVAGNFGISARAGNSPFFVIE
                     ADEYDSAFFDKRSKFVHYTPKTLIINNMEFDHADIFDDLKAIQRQFHHLVRTMPQSGC
                     ILSAIADQNVQDTLKMGSYSQLQFIGEQNEWFAKPLNADCSQFEVFHLGVKQGEVHWS
                     IIGKHNMHNALMAIAAAHHAGVEVQGACEALGKFVNANRRLEVKGEVNGITVYDDFAH
                     HPTAIEATIDALRGKVGKNQRILAVLEPRSNTMKMGVHKDEIAPSLHDAEAVFVYQPD
                     IIAWSVSEITNVLSQPAYWSANIDDLVDLVVKEAKPTDHILVMSNGAFGGIHQKLLAK
                     LADK"
     gene            complement(18299..19054)
                     /locus_tag="PXA71_000913"
     CDS             complement(18299..19054)
                     /locus_tag="PXA71_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HDL5105042.1"
                     /translation="MKLKSFKPMFMLLSVAFLTACSSSINPETGVRDDPLEGFNRAMW
                     KVNYDYLDPYVLKPVAKGWKEYVPSPVKTGLINVANNLDEPVSFVNRLIEGEGKKAMV
                     HFNRFWINTVFGLGGLIDWASLDEGLRLNNGQRGLGESLGAHGVPSGSYIMMPAYGAI
                     TPRQGIGSAVETGYSVLTYVGSPWSIAKFVVQGVDTRSKLLEQDALLEQAQDPYVTFR
                     EAYFQNLEFKVKDGNVEQSQQEQLSEEELKNID"
     gene            19209..19526
                     /gene="metJ"
                     /locus_tag="PXA71_000914"
     CDS             19209..19526
                     /gene="metJ"
                     /locus_tag="PXA71_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HDL5105043.1"
                     /translation="MADWNGEYISPYAEHGKKSEQVKKVTVSIPIKVLEILTNERTRR
                     QIKNLRHATNSELLCEAFLHAFTGQPLPNDEDLMKDRADEIPEAAKQKMCELGIDPDE
                     WQY"
     gene            19574..19804
                     /locus_tag="PXA71_000915"
     CDS             19574..19804
                     /locus_tag="PXA71_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF997 family protein"
                     /protein_id="HDL5105044.1"
                     /translation="MYQQLTTEARWAVLLTLIYLLGWVGFAYFSPQGRGIFGFPIWFE
                     LSCIFLPVLFSLVATIVVKKVYKNIDLEVNNE"
     gene            19797..21221
                     /gene="panF"
                     /locus_tag="PXA71_000916"
     CDS             19797..21221
                     /gene="panF"
                     /locus_tag="PXA71_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HDL5105045.1"
                     /translation="MNSEMILPLIAYLIFVFGVAFYAYRKRQGGSFISEYYIGGRSMS
                     GFVLAMTTAATYVGASSFIGGPGAAYKYGLGWVLLAMIQVPAVLLSLGALGKKFALLA
                     RKHNSVTINDMLLARYQNKFVVWIAGLALLLSFFAMMTVQFIGAGRLLETTLGIPYQT
                     AVMIFAITVGLYTFIGGFRAVVLTDTIQGLVMIVGTSILLAGVIYATGGVENAMHTLE
                     AINPQLTTPYGIDERPLDFTFMTSFWVLVCFGLIGLPHIAVRSMACKNSQALHRAMII
                     GTVVIAILMFGMHLSGVLGRAVVPDLKVPDQVIPTLMVQVLPPVVAGIFLAAPMAAIM
                     SSIDSMLIQSSSTLIKDLYLAIKPNAINNEKKIKLFSTITTLTFTVLLVFAALTPPEM
                     LIWLNLLSLGGLEATFLWVIVLGLYWEKANATGAIYSMLAGLSCYVLMTTFKIAIFSF
                     HAIVPSLLIGLIAFLIGNRFAPKV"
     gene            complement(21298..22488)
                     /gene="nhaA"
                     /locus_tag="PXA71_000917"
     CDS             complement(21298..22488)
                     /gene="nhaA"
                     /locus_tag="PXA71_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HDL5105046.1"
                     /translation="MEKLKEFLKSEASGGVLLLVFAFAAIVCANTSLSDFYFEFLQTI
                     VSVQFGEFALNKPLLLWVNDGLMAVFFTLVGLEVKKELFEGSLSSYKKAIFPAIAAVG
                     GMIVPAIIYWAINQNHPEYHNGWAIPMATDIAFAVGIVALLGTRVPLALKAFLLALAI
                     IDDLGAIVVIAIFYSQEISVQALTIAAIAIIGLVLLNRFKVTSLCAYLVVGLVLWTSV
                     LKSGVHATLAGVIIGFCVPLKGKHGERPAEELEHILAPWCAYMILPIFAFANAGVYLL
                     EMGMEQLSSPLPLGIALGLIIGKTLGVFGFSYLAVLFRLASLPQGVNFKQIFAIAVLC
                     GIGFTMSMFLASLAFDVSEAGESITALARLGILLGSAVSAILGYTLLRMATKQNNPEN
                     NATY"
     gene            22656..23084
                     /locus_tag="PXA71_000918"
     CDS             22656..23084
                     /locus_tag="PXA71_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDL5105047.1"
                     /translation="MTHDWLYWALASALFAALTAIFAKVGLQGVDSDFATFIRTVVII
                     IALIAFLTYSGKWQPLDSLSSKNWLFLILSGLATGLSWSAYFKALQMGNASQVAPIDK
                     FSLVLVTLFAVIFLGERPSGQDWLGIGLVAGGVLLLAFKR"
     gene            23090..23812
                     /locus_tag="PXA71_000919"
     CDS             23090..23812
                     /locus_tag="PXA71_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase superfamily
                     protein"
                     /protein_id="HDL5105048.1"
                     /translation="MQNFANIEIAFIHRKAPLPSDFSYPEMPGGLTEKQVQKWQSRRV
                     AFFLLTELFKKHHLDLDLLADMQRSPSGRTFVDSEQIDFNISHSGEWIAVIFSYSFAK
                     LAVGIDIEHPQKIRRYHDLICHYGNAEEQNVLLANHSPILSNLAERFYLSWCLREAIL
                     KSQGVGIVKLSEVKHLPLEKQIFSAHCPKGKLHFVSELPFYLSYFYQQPQNMLLSEPL
                     LYHWQNGQFQPIKCQSLVYDVN"
     gene            23822..24241
                     /gene="psiE"
                     /locus_tag="PXA71_000920"
     CDS             23822..24241
                     /gene="psiE"
                     /locus_tag="PXA71_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HDL5105049.1"
                     /translation="MPKKSLEEHHSSFGKIASETFQWIMNIALLVTGALLSYSLFAEA
                     YSLYELSFSDSEKFQIVEKIVIFFLYFEFLALIVKYFKSNYHFPLRYFLYIGITAMVR
                     LIIVDHSNALHTLLFALSILVMIIALYIVHTDRLHKS"
     gene            24250..>24850
                     /locus_tag="PXA71_000921"
     CDS             24250..>24850
                     /locus_tag="PXA71_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDL5105050.1"
                     /translation="MKLTQYQHNDLQILNRETVYKGHFELQKITFRHKLFSGEMSGEV
                     VRELLIKGEAAALIAYDPTLDKVVLIEQVRIGAYDAGQKKSPWLLELVAGMVDKGNEE
                     PAEVAMREAKEEAGLEVTTVQHALSVWDSPGGQLERLHLFLGLIDSTQVKSGEVHGLL
                     EEENEDILVHVVSREQAYQWVEDGTIDNVIAVIGLQWLQL"
BASE COUNT         7097 a         5555 c         4731 g         7467 t
ORIGIN      
        1 tctatatgtc cttcaaaaaa aacaaaacat caacaaaaaa ttaacaaaac cataatattt
       61 ttattgattt tgtgaagcat gtcacatttt atgatttaat tataggctca ctaccttaca
      121 ctcttgagct gtaatatact atttaactgc ggtaataact gcacgatcag tctgagttgt
      181 tgtatcaaca ctaaggcgag gtcattttgc ttttgctgat tttcttgctc aaattgggtg
      241 aggtcttggt cgatagcggt caatttttcc gataattttg caaatgaacg gctctctgag
      301 gcaatttgcc cgatgatgtt tgccacctct ctggcgtgtg agaagaacat tgcggaaaaa
      361 tccacttgtt gattaatctc tcggctagca atacggtaag cccctaaggt ggaaatataa
      421 cccagcaagg tgtaagcaat acctaacaat tttggggcga aggttaaatc gttcgcatat
      481 ttttgtggtt cgctgtacat attggtaatc gcattactca gtgccgataa atggttatgc
      541 acatcacggc gggcaatacg gtaaggcagt tgctcgttat aaccaaactg caactgggcg
      601 ataatatggc gtaaatattg cccactggct ttcaagccgt tatgtaagtt acgttgtaaa
      661 tttaaatact tccaatccgg ccataagaat gccactgcca gccacgcaat cgctgtacct
      721 agtaaggtat caagcattcg cattaagatg ccgctttcaa ggctcacgcc tgcaatatca
      781 aggcttatca ttaccaacac agtgatataa aaggttgaaa agccataatg taccaagcgg
      841 aaaaaggtat aaagcgaacc ggtcagtacg attagcccaa gctgggcttc gaggctgagc
      901 gccacgttaa acagttcaaa agagccacca accagcacgc cgaaaattgt gccgatcaca
      961 cgctgaatca gtcgggtctt agtagcagtg taattcggtt ggcagacaaa aatggctgtg
     1021 agtaaaatcc agtagccttt gctatcaaag cctaaaatcg gcacaatcgc actgcacaac
     1081 agcaccacta tcgacaaccg aacggcgtgt cgaaacagtt gggattcaaa ggttaaatgg
     1141 gctttaattg cttggctgat attgcttaag ccggtaatat tttcggcgat caagcggtga
     1201 gattttgtga aatttttact taacggttca atatgctcac cactgcttga gccttgttca
     1261 atctgggcta gttgccgctc aatattgcct aaattttctg caatagcacg ccagcgataa
     1321 gcacttttca agccccgttc ttgatgataa ttcaatgaat taagcaagcc ctgcaaggct
     1381 ttttcgccac gaacgccgtg ttcatatact tctctatggc gtaacgacat tgcaattttt
     1441 tgacacgccg cagcctgtaa ttccagcacc cgttgaaagc ggaacattaa atcactgtta
     1501 cttaattgtt ggaacagttc gtgatattga taatggctgg aacttgcccg ctctaaaata
     1561 tcttgagcgg tgaaatagta acgcaacatt cgctgtgtcc gttgctgctt gtgctggcgg
     1621 cttaggcggt agaatagggc aactctggtt ttatcaaagg cagccatcac ctcactattg
     1681 gctttcgcca aggctagttg tttggcagct aaatcgtcat catcagggtc aaaataggca
     1741 gatttcgcca gtaaataatg gctcaacgca aggtaggcgg acgctaaatt ctcctgcacg
     1801 gttcgattcg ggaaaatcag gtacaccaaa ataccgacca aaccatagag taaggtgcca
     1861 agtaagatca tcaccacatt gtgataccac aatacttcgg gcgtataagc caggctgtta
     1921 taaaccgcca caatcagcgt gccaaaagca atggtactat agcgttgccc gattgcccct
     1981 aacattacca gcaaaaaggt gcaaaccacc gccaccggca caaacagcca gcccaaatgg
     2041 agcgacacac tcgccccaat cgaggaaagc gagaacgcca ctaggctgat aatcagattt
     2101 ttcgctcgtc cgattaggct gttgtctaaa tccaccaaac cgccggcgat aatgcctaac
     2161 atcaacggca tcgcaaaatc agaaataccg agctgccaaa tgctgaccgc cgcaatgttt
     2221 agcgaaataa acatcggcag ggttttaatt acattttccg aaagccaact gtgttgtaga
     2281 tatcttaaaa atttattcat atttgctcat ttcgggcagg cacaggacct gcccctacct
     2341 acactacccc aaacgttctg ccaaatagcc atcataatcc ggcacattca cgctgattgc
     2401 ttgattgaac aaatccgcat ttaacagaaa attagcggtg gtttcgttaa tcgccaccgg
     2461 aatattccaa acggtcgcaa tccgcatcag ggctttcaca tcaggatcgt gcggagcggc
     2521 attcatcgga tcccaaaaga acaccagcag atcaattttc ttttctgcga tcagcccgcc
     2581 taattgctga tcgcccccca tcgggccgct taacaatgaa gtaatttcaa gccctgtttc
     2641 tctggcgagc aaatgcccgg tagtgccggt ggcatatagc ttatgcgagg caagttgggc
     2701 ttgatgagtt tgtgtccaac gaattaaatc ttgtttacag ctatcgtgag ccactaaggc
     2761 aatctgtttt tgttttgcga tggttctgac ggtggttttc atttttagct cctttgcaaa
     2821 atttttcaca aatcataccg cttatttttc gcttttgcat tgactaatca cggcttatgg
     2881 ctaaaatcag gtaaaaattc gcattttaaa acaaaggatt aaccgcaatg aacttataca
     2941 acatcaaaca ccctgaagaa caagtcaatt tcgcccaagc ggtacgccaa ggcttaggca
     3001 aaaatcaagg gctatttttc cctgaagtgt tacctaaatt agatagcatt gatgaattat
     3061 tggatttacc tttggttaaa cgcagccaaa aaattctttc agccttaatc ggcgaagagt
     3121 taccgcaaga aaccttaaat gcaatggtaa aaaatgcgtt cactttcccg gcaccgcttg
     3181 ccaaagtcaa tgatgatatt tatgcgttag aattatttca cggtccgact ttagccttca
     3241 aagattttgg tgggcgcttt atggctcaag ccttagccaa tgtacgagga gacggcaaaa
     3301 ttactatttt aaccgctacc tcaggtgaca ccggtgcggc ggtggctcat gctttctatg
     3361 gtttggaaaa tatcaacgtg gtcattcttt acccgaaagg caaaatcagc ccattacaag
     3421 aaaaattatt ctgtacctta ggcggtaata ttcgcactgt tgcgattgaa tccgactttg
     3481 atgcttgcca agccttagtg aaacaagcct ttgatgatgc cgagctacgc caagcgattg
     3541 gtttaaattc cgcaaattcc atcaacatta gccgtttact ggctcaaatt tgctactact
     3601 ttgaagcagt tgctcagtta ccaaaagaaa aacgagataa cgtagtggtt tcagtaccaa
     3661 gcggtaattt cggtaactta accgccggct taattgccaa aacattaggt ttaccgatta
     3721 aacgttttat tgcctcaacc aatgccaatg acaccgtgcc acgctattta caatcaggca
     3781 aatgggaacc aaacgcaacc gttgcaaccc tttctaatgc aatggacgta agccgcccga
     3841 acaactggcc acgagttgaa gaattattta aacgcaatgg ctggagtttg tctgaattgg
     3901 gttctgccgc attaaacgat gccgaaaccg aagcggcttt gaaagctcaa tatgcagaag
     3961 gttatctgtg tgagcctcac ggtgctattg cttaccaaag cttgaaagat cagctacaac
     4021 aaggcgaaac cggtattttc ttatgcaccg ctcacccggc aaaattcaaa gagtcggtgg
     4081 aacacatttt agcgattgaa ttgccgttac cggaagcatt agataagcac aacaaactgc
     4141 cactgttatc cgatgaaatg gcagcagatt ttgcaacatt gcgtgcatat ttgttgaaat
     4201 aaatattcaa taatagaaaa gggattaagt attaaactta atccctcttt ttatgcatta
     4261 caagcggtta tatttgccta ttattttgca aaataagcag ctaactcatc actaccgcca
     4321 atatatttac cgccgataaa tacttgtggc acagaggttt tacctgtaat tgctcgtaca
     4381 gaaattgtgc ttgcatcacg acctaacaca atctcctcaa aagtatagcc ttgctctttt
     4441 aataatgctt ttgcttttgc acagaacagg caacccggtt tagtgataat cgaaacagac
     4501 tctttagctg tccaatttgg acttaaatat ttaatcattg tatcggcatc tgatacttta
     4561 aacggatcgc ccggttcttg tggctcaata aacatttttt ccacaatacc gtttttcacc
     4621 agcatcgaat aacgccaaga acgtttacca aacccaaggt catttttatc aactaatagc
     4681 cccatacctt ctgtgaactc accattacca tcaggaataa cagtaatatt ttcagattct
     4741 tgatctgctt tccaagcgtt cattacaaag gtatcattaa ctgacataca gatgatatca
     4801 tctaccccta atgccttaaa ttcacaagct aattcattat agcgaggcaa atgtgttgat
     4861 gaacaagtcg gtgtaaatgc tccgggtaat gaaaacacaa ccaccgtttt gttattaaat
     4921 aactcatcgg ttgtgacatc aacccaagca tcgttttgac gtgtacgaaa tgttacactg
     4981 ggtactttct gacccgtcat atctttaaaa gacatattaa tgttctccta tagaattata
     5041 tattacaaaa atcttaggca ttatactcac aaatatggca taattcagcc tatcagaaca
     5101 ataggaaaaa tttaaattgg aggaatcaag tgaatattcg agatttagaa taccttattg
     5161 cacttgcaga acataagcat ttccgtcgtg cagcagaatc ttgtaatgtt agccaaccta
     5221 ctttaagcgg gcaaattcgc aaattagaag gcgaactagg cactattctg cttgaaagaa
     5281 ccagtcgcaa agtcctcttt acgcaagcag gcttaacatt agttgaacaa gccaaggtag
     5341 ttttacgtga agtaaaaatt ctaaaagaaa tggcaagcaa ccaaggtaaa gagatgtctg
     5401 gcccgcttca tgttggtgta atcccaacct tggggcctta catttcgcca attattgtgc
     5461 ctgcattaaa agcagaattt gcagatttag agctgtatat ttacgaatta caaaccaacc
     5521 aattattaga tcaacttgaa tccggccagc ttgattgtgg cattatctca tttgtaaaag
     5581 agagtgaatc ttttattgaa gtgcctatct ttaatgaaga aatgtacttg gtagttccag
     5641 aacaacacga atgggcagcg cttaaaaaat tcgatatgaa tttattaaaa aaccgtgagt
     5701 tgctcttttt agacagtggc cattgtttac gcactaatac gctagactat tgtctatcca
     5761 ttggagcaaa agaaaatcca cactttaaag ctaccaacct tgaaacctta cgcaatatgg
     5821 tagcagcaaa tgttggccta gcattgattc ctaaattagc cgctaaaccg attaaaggag
     5881 tacattatat tccacttgaa aacccgaaac cgtttcgagc tgtgggaatg gtgtatcgac
     5941 caggttcacc attacgcgcc cgctatgagc gtttagctca agccattact aaaattatgc
     6001 aatccgaggc gtaaaaatgg caaacggtat gagtgtgcgc gcaattcaga aagaaaaaac
     6061 acgcagagca ttagtagaag ccgcctttaa tcaattaagc tcagaaaaaa atttctctaa
     6121 tctcagtttg cgtgaagttg cacgtgaagc tggagtcgca ccgacttcgt tttaccgcca
     6181 ctttaaagat atggacgaac taggcttagc aatggtggac gaatccgggc tactattacg
     6241 ccaattaatg aggcaagctc gaaaacgaat tgcaaatggc ggaagtgttg tcgtggtttc
     6301 agtggaaaca ttcttcgaac tgattgccga ccgccctaac gttttccagc tattactacg
     6361 cgaaagctcc ggtacatcgc aagcgtttag aaccgcagca tcacgcgaaa ttcaacattt
     6421 tgtagctgaa ttggcggact atattatgag caaagataat cacagtaacc gagaacttgc
     6481 ttatattcaa tcggaaggtt tagtcacgct agtatttact gccggttctc atgctttgga
     6541 tatgaacaat caagaacggg aaaaactaaa gcaacgtgtc attatgcagc taagaatgct
     6601 gattcgtggc tccacctatt atgccaataa acaagcttca tcaacataaa aaaacagacg
     6661 cctaagcgtc tgtttttatt ctttcgtaat atatgcagtc gatagcttta accattctag
     6721 tgctaattga tgatgttcag ataacgcatt ccataacgca tcttctgaca agatactata
     6781 attgccttta gtatctaact gttcatcaaa actatcatgt aattcacgcc attccgggct
     6841 agcataaaac cgacttaagg gttccaaaag tgcagaagct cgtttccatt gctcaatccc
     6901 cttttccaat tctggtaata gctctaccca ttggttataa caatcctgca ttttctgaat
     6961 atctgctttt ttcattcttt accgcttaca ccataaattt tagcctcaat ataacataaa
     7021 aatccccttc cgaagaaggg gatttcaact caattaggct aaattaccac tggtatccaa
     7081 cgcctacacc gccaccaaag tcgcctcggc tattcgcatt accttgtaat ttcaagataa
     7141 gcttaccgtt atcacttgaa cgtgaataac ctactgcaag cgcgttttca cctttaaatg
     7201 taccacctgc tgcagccacc atagatttac ctggaatgta aacctgcggt aacgctgctg
     7261 ctgcatttga accggcaata ccagcacggg cttcacggtt attacgatgg atcttgttat
     7321 ttaagtgatt aacagcacct tttaactgac caacattaac agcatcggta tctgcctcac
     7381 ctgctttaac attagtaata cggttaccac cattatttaa gccatctttc gttaagctta
     7441 ccgcttttcc tgcagagcca ttattaatgg ttacgccatt attgttcacc aatgtatcac
     7501 cagtcttgct agtaaattca ggggtatctg aaacggctac agttacatca gaacctttac
     7561 gtgtcacttt gatattatta cctgcattca cgctcactgt actacctgct tttactttcg
     7621 caggggcttt atccccttca accgcacctg taccaactgc tttagaatct acgttccagc
     7681 ttacgttgtt tacggcattt gctactgttg ttgcattcac aaagcgtgaa ccggtaccgt
     7741 taggatcttg aacattgatt ttgccgttat cagcaacggt taaatctgtg atgtttacgt
     7801 tcactttcac ctcaccagcc ttatcactgg taatagttgt accattacca tttacgatat
     7861 tgatagaacc atcttcatca gtaccaatgt tattaccatt cactttcgca tagttgttca
     7921 gctgtttacc gttgataaca tctgtgctta ctgggctaat atcgccatct gctacattag
     7981 tgatcttagt tggtttaccg tctttatcac cgactttgat gttatcacca tcattagtga
     8041 ttttcggacc attctcactg aactgtacgc tattgaagct cacatctttt gctgtcgcaa
     8101 aagtaaattg attaccatca cgtttaacag ttaagttatc acctgcttca aacacaactt
     8161 cttcgcccgt tttcactagc ttagtcgcag cttggtcacc ggcagcctta ttacctgcag
     8221 atttaatatt aaagcctgca ttattcactg catctgcaac agtttgagca atcaataacg
     8281 catttggctg agttggtgct ttcaccgtac catcttcgtt gttacctaac tcactggtat
     8341 ttgcagtgat gttaccttca ttatctactt taatagtagt accgtcagtt ttcgcttcaa
     8401 cgttataagt agttgaacca tcagcattcg tgctaggtgt gatagttaca cctcggttac
     8461 cgcccacttt cgtagtagct gcattagttg ccgcttgtaa atcacctaag ttcactacgt
     8521 tgtttagctt gtcgccttca gcatttttaa tcgcttctgc acggtcttta ccctctgggg
     8581 ttgagccatc ttcgttacga acactacttg ccacattgcc taattgaaca ggggcttcac
     8641 ctgtgaattt agccgtattg cttggcgttg agctatcagt aggatcttgg tttacaaact
     8701 caatcgggct atctacttta atcgtattct taccgtcttt gttttcaacc gtgaccgttg
     8761 tacctttacc gttaataaaa tcaaccgtgt cattatgtac cacagtatca accgctttgc
     8821 cgttaccttg taaattccag cctgcattta atacatcacc taatgttgct gcattactta
     8881 acttatcagc taagttggtt ggattattgt ctgctggttg aaccttatca tctgcagtca
     8941 caggtatcag attagacgca acattgctaa tcgctttatt acctgcattg ataccatctt
     9001 tattgatagt aattggatta tttgcaggat ctgcttcatc agttggtaca gttacagtgt
     9061 tagaggttac gctgctaaac ttaacatcat ctttagtcgc ataaatgact ttaccatcag
     9121 cttcttgctt cacagttaag tttttacctg caaccatttc aactgcttta cccggattaa
     9181 tcagttcatc accacctgaa agcttctctc caccttctac agccgacgtt ttcaacgtaa
     9241 agcctgagtt attgatggcg ttggtaatat cacctgctgt cactaatttc ttagcatcat
     9301 cagcggttgg ttcatcaatt ctaccgtcat tatttgcatc atttaatgcc gtagtgttag
     9361 ccttgatcgc accggttgta ggatctttta caattgttac atcgtccgta ttcacagaaa
     9421 gatcgaacac attcgcgcca tcagcatttt ttgtcgtgtt aaccgtaact gatttatcag
     9481 tcgacttcac ttcttcacga gatgccatag cgaaagtata aagctgacta ccatttactg
     9541 catctttact atctgcattt acgtcaccgg cagctacatt agttactttg actgcattac
     9601 cgtctttgtc accaacattg atattaccac cattgttagt aatcttagga ccttcatttc
     9661 cgaactgtac actatcaaaa ttcacatttt ttgcagttga aacagtaatg ttattcccat
     9721 cacgggtaat ctcaatgttt ttaccattta agaactgaac cgtatcacct gttttcacca
     9781 ggctcttctc gtcaccgttt gctttaatgt taaaacctgc attgttaatt gcatctgcaa
     9841 cggttttagc tgttactaat gcatttggtt ctgtaggctc ttccacttta ccatcagggt
     9901 tatttgttaa ctcgctggtg tttgccgtga tttcgccctt atcgtttacc ttaatggttg
     9961 taccatccgt ttttgcttca acggtataag tggttgagcc gtcatcgtta gttttagatg
    10021 ttacagtaac acctttatca ccttccactt tggtggttgc tgctttcatt gctgcttgta
    10081 catcacccac attcacagca ttattcaacg tatcacctgt tgcgttgtta atattatccg
    10141 caatcgcttt acgctctgca tctgttggtg ctgctttatc tgcaaatgta ccacccacgc
    10201 cgctcttcag attagtgatt gagcctgttg tatctggttt accattgctc atatcaatgc
    10261 tgttgaatgc aacattatct ttcgttgtgt aagtgaattt accgtcagct tgggtaagtg
    10321 tcatattttt acccgcatca aaggtaactg tttcacttgg cttgattagc tgtgttttct
    10381 tacctttggt ttcaccacca tcaacaccat cacctgctgt tacattaaag cctgaattat
    10441 tgattgcatt agcaatatca cctgccgtca ctaatttctt agcatcgtca cctgtaggct
    10501 cagtaacttt accttcagga gaattattta atgttgtggt attcgcttta acttcgcctg
    10561 ttgtcggatc tttcacgata gtaacgttgt cagtattcac tgtcatatta ccgtcattat
    10621 cacgaccgat agatttatcc gttgcaacat ctaccgtata ttcagtattg cctttatcat
    10681 cttcctttcc ggctttaaca gttacggctt tagaaccagc tactacagat gaggttttct
    10741 ctgaattatt aattgcatca gccacattac cacgagttac tgtaggagca cctgctttcg
    10801 ctacatctac cgtatagatt gtttgaccat tatcacctgt ttcaggtgca ccaacagttg
    10861 ctaaacctga acctttcact tcggttttgt gacgctgctg cttgttttaa ctgacttaca
    10921 ttcaccgcat cagtatcagc ttcacctgct ttcacgcctg taattttggt tggattacca
    10981 tcattacctg caatattaac attaccatct ttattcgtga ttttcgggcc attatcacca
    11041 aatgttacgc tatcaaattt cacatctttc gctgtttcgt acgtgaatat agtgccaaca
    11101 cgtttaactt ttaagttatc gcctgctgca aaaatcactt tttcgcccgg attaatcaac
    11161 tctgctgctt cttgatcacc atcagcttta ttgccaccag attttgcatt ccaacctgct
    11221 ttttgaatcg cttcagaaac tgtttttgta gttgcaactt tatcttcttc tgcaggtgta
    11281 gttactgcac ctgttgtgtt atcaaccgtg atagaaccgg tatccacatc aaaggttact
    11341 ttacgccatc agcttcttgt gtaacatttg aaactgtacc tttaccgttt acaaattgta
    11401 cagattcatt tggggtcact gtgcctttgg tttcacccgc attatcttta atattgaaac
    11461 cttggtttac atagttattt aagttcgtaa ttgcatcgcc aacgtttgtt gcagtattac
    11521 catactgagt tccagctgca ttcgttacat tatatttagg ctgagtcaca gagccatccg
    11581 gattcacaac agaaccgcca ccaaaattat ttgcagttga atttgcaagg ttactggttg
    11641 cattcattgc catataaagt tgtgaaccat taatcgcatc ggttgatgta gcagaaatct
    11701 gacccgctgc cacattttgg atttgacgct ctttacctgc agagcctaca gaaacaacat
    11761 agttagtatc tttatttacc ccggcaaagc cattataagt aataccccct accgttgcat
    11821 tttcagttgg tgttgctgcc cttacgactg attcgctacc caaagcaaca gaactattca
    11881 gagtagcttg agctcccata cctaatgctg tagcaaattg agctgttgca ttagcacgtg
    11941 taccaacagc cactgctgat tgtgctgagg caattgaatt tgcacctacg gctaaagagg
    12001 catttgcact cgcatttgct gcaacaccaa aggcagaagc tttttcagcc gttgcattag
    12061 cattagaacc taccgctgta gcatcacctg ctgtcgcatt tgtttggcga ccaagtgcgg
    12121 ttgtaccatt agccgttgca tttgctgaat gaccaactgc cgtagcttga ataccttttg
    12181 aaaccgtagc aacacctaaa gataacgctc cgttaccatt tgcatttgag tttgtgccta
    12241 atgctactgc cgcttgctct ccacctgttg ccgttgcatt cgggccgatc gcaattgagt
    12301 ttctgctctt cgcgccatca ttagcttgat tctcaggtac ggttgaattc acagagaaat
    12361 attgaatttg gcttgcttgc gcaggaatat tgacagaaag atcataaata accgtgccat
    12421 ttgcatttct ctctgtactt tttacagtta ctgtaccatc gtttgaaaca acagtagctt
    12481 gggtatcttt cgtaaagtca tcaatggctt tcttagttaa accaatttca tagttagttg
    12541 tattcgcagc agttgcagct ttacctgtta cagtaatgta atcagggcta gaagaatttg
    12601 ccgtggtgtt atacgcattt actgtataaa tagtttgccc atttgcaccg gttgcatttg
    12661 taatattaac attgctacct gcaacaactt ctgtttttac cgcttttaat gcttcttcaa
    12721 tcgtattttt atttgttcca ccaatattag tataggtaac agaaccatca ggctttactg
    12781 tagcattacc acctaaaata tttttagttg aattagcaag gttacctgtt gcgttcattg
    12841 ccatataaag ctgtgaacta ttaattgcat cggttgatgt agcagaaatc tgacccgctg
    12901 ccacattttg gatttggcgt ttgatcgtgt ttgagccaac agaaacaaca ttccctgctg
    12961 ccgtagtatt agccgcaaag ccggaataag taataccatt taccgtcgca gaaggaactg
    13021 ccacagcgtt ggaaacggtt gaattactcc ctaaagcaac cgaattattt agcgctacat
    13081 tagcacctga gcctaaggca atagcaaaac cggcacttgc tttagcacta tcaccaattg
    13141 caaccgtaga ttggttggaa gatactgcac ttacccctaa agctgtcgca ttaacacctg
    13201 aaactgtcgc attataacca atcgctgtac ctctagttgc agtagaagtt gcattagcat
    13261 tagcacttga acctaaagct aaagaataag tagcatttgc aacagactta tcccccattg
    13321 cacctgaacc cattgcaaat gaacgagtgc cactagcggc agatctccat cccattactg
    13381 ttgaacggtt accagtagct agagctcctg caccaaaagc tgttgcacgg ttacctgttg
    13441 cagcagtatc cgtacctaat gcaatagcat ttgctgaagt cgctctagcc cccataccaa
    13501 tagcaataga aggaactaat gcccaattct gaccagtgtt attgagactc tctacaccaa
    13561 tattatagta atgtaagaag tatcttctgg atccactaaa tttgttctat gcgttgcatt
    13621 cgtatctgta ccaattgcaa tagtagatct gccagttgag attgaatccg caccaatagc
    13681 aattgcgttc tccgatgatg cagttgcttg tgttgaaata taattacttg ttgttgaacc
    13741 tataagatac aacagccaca gcatcattag ctcccaacac ggcactagct ccagccaata
    13801 aagccaatgt tgccttactt gcagaactaa cagatttcgt tttacctttc gctcgttgta
    13861 attcagatac tgcaacccaa ctttgtgttg cctgattcca aataacttta aaaatttgat
    13921 tcataatcga ccctatataa aaataaaaaa gattacgtag aacctatgtt caacataatc
    13981 ttcaccaata taaaaaaccg ccacctattt aagtgaaata acttacttat agactcagaa
    14041 atttaagtgc gcgtatttta cgctatttgt aatataattc atcttctgga gtgtaaattt
    14101 attgtaaata atacgaggaa tctaaccgct tgttataacg caaaacacct tgacttaaat
    14161 caagccacta cctcattttg aggggagatt tatacgcagt gaaattttaa aataagctaa
    14221 ggtttacgga taatcgttca acactattga attatcactg tagttatcgt taaaaaggta
    14281 tgcttttatg aaccaattct tccctctaat ctttagctta actctatttt ccggcgtaac
    14341 tttggcacta gaaaaagcac ctcgaactat gccgacagaa ggaataaata agcccctact
    14401 tggacaaatt ctattctttg acaatatgct gtcacacaac ggttcacaaa actgctccag
    14461 ctgccataat ccggattatg cctttattga taaccgcact actccggcaa aaggggtggt
    14521 ttcacaagga gatactccaa ccaaattcgg caaacgcaac tccccgacca tgctttatgc
    14581 gaaatactcg cctgagttcc actttgatga gcaaagtcaa gaatatatcg gcgggcagtt
    14641 ctgggacgga cgagccaaaa atctcgccga gcaagccggt atgccgccta tcgacccaaa
    14701 tgaaatggga atgcctaaca aattagaagt agccaaaaga ttatataatg tgccgatgta
    14761 tcagcgattt ttagggcaat tttacggtga aaaggtatgg gaaagttatg aaagcgttta
    14821 tgcggcaatg gaagatgcga ttgcgacatt ccaacaagaa aacaaacttc tcgctccatt
    14881 tgattcaaaa tatgatctat ttttaaaagg cgaggtacaa ttaactgcat tggaagaaaa
    14941 aggcagagct ttatttttca ataaagctca aactaattgt agtagttgcc accaattaca
    15001 gagtgctgca aaccaccaag aagaaacctt tagcaactat cactattaca atgtaggcgt
    15061 acccggtaac ccagacttga tagcggttaa cggcttcgca ccagacttcg tcgatttagg
    15121 cttatttgaa aacccaaatg ttaaaggtga tgaaacacaa aaaggcaaat tcaaaacccc
    15181 aacattgcgt aatgttgccg tgactgcact ttatatgcac aacggtgtgt ttaaagaatt
    15241 aaagactgtt ttgctgtttt tagacagcta caataacccg gagcgaaaaa tcaaccctga
    15301 aaccggcacg gcgtggcaac aagcagaatt tgaacccact atcgcccacc aaaaactcaa
    15361 agccaaaccc ttaagcgatg aagaaattga tgccctcgaa gcatttttaa aaaccttgac
    15421 ggatgagcgg tatagaaaat aaggctacaa gcggtaaaat tttggggaaa ttttaccgct
    15481 tgcgtttaac taccgtgtta gctcactttc taacttttcc aatgcctgca aatcttccca
    15541 atctgcctct ttctgtttta aacatttacg ctgaatatca aatttttcgt attgctctct
    15601 gacaaagctt tccatttgtt tatgcgtgat tgttccacca tttcctaata cagaaaagcc
    15661 gttaaactca atcaacatat ctacatttct tcgccagaaa cctaacgtaa gatcttggtt
    15721 gttcttcaca cgtaattcgg cactttcaag aaagatcatt accaagcgat ttaaagaatc
    15781 cagctcatta ttatctaaat agtttttcgc aatcacaata tcgcctttac gcacgacttt
    15841 tcctttccag ctagttaatc ccatattcat cttagtcgca tcagcacgtt gacaaatcaa
    15901 ctcagcggca gtgtgtttgg ttattgcata aatgagctta ttttgcgttt ctgcaaaaaa
    15961 catttgcgta tttttatctg ttttgtcgta atcgctagag agtttgaaaa gctctcgtac
    16021 tttttgatag aaacgcaatt cacttgcccg aatctcacga atctgttcaa gtaattcatc
    16081 gaaataatct aaacgaccct gcggattttt caaacgctcg ctatcaatta aaaaaccttt
    16141 ttcgagataa gtgcgtaatg tgctgtttgc ccattttcta aactgtactg ctcttgggct
    16201 acgaactcga aaccctatcg ccagaatcat ttcaagtgaa taatgtttta cttgataatt
    16261 cttgccatct tgagcagtta tcaagtaatc cttgataact gaattctcat ctaactcttt
    16321 gtcttttaag atatttttaa tgtgttcgga tatattttgc acagaggtgt caaaaagttc
    16381 tgcaagttga ttttgtgtca gccaagcttc attttcaacc actaacaagg ctacattgct
    16441 tttgccgtct tccgtattat aaataattaa atcgttcata ttttattctg tttattggta
    16501 gagatattag tcgctatttt caataaaaca tgtataaata tccagaattg attttgaatt
    16561 tttcgatgca gatcacaaaa atagagagtt atacaaacaa gcggtaaaat tttgtaaaaa
    16621 atttaccgct tgtaaaggtt acttatcagc taatttggca agtagttttt gatgaatacc
    16681 gccaaaggct ccgttgctca tcactaagat gtgatcggtg ggtttggctt ctttgacgac
    16741 tagatcgact aaatcatcaa tatttgccga ccaatacgcc ggttgcgata acacattggt
    16801 aatctcgctc acactccacg caataatatc aggctggtaa acaaacactg cttcggcatc
    16861 gtgtaggctt ggggctattt catctttatg gacacccatt ttcattgtat ttgaacgagg
    16921 ctctaacact gccaaaatgc gttgattttt gccgacttta ccacgcagag catcaatagt
    16981 cgcttctatc gcagttgggt ggtgagcgaa atcatcataa acggtaatgc cgtttacctc
    17041 gcctttcact tccaaacggc ggttagcatt cacaaacttg cctaatgcct cgcaagcccc
    17101 ttgcacttca acccctgcgt gatgagcggc ggcaatcgcc atcagagcat tatgcatatt
    17161 gtgcttgccg ataatcgacc aatgcacctc gccttgttta acgcctaagt gaaacacctc
    17221 aaactgtgag caatcggcat ttaacggttt agcaaaccat tcgttctgtt cgccaataaa
    17281 ttgaagctgg ctgtaactgc ccatttttag tgtatcttgc acgttttgat cagcgattgc
    17341 cgacaaaata cagccacttt gtggcatcgt gcgaacaagg tggtggaact ggcgttgaat
    17401 cgcttttaaa tcatcaaaaa tatcggcgtg gtcaaattcc atattattga taatcagcgt
    17461 tttcggggtg taatgcacaa atttagaacg cttatcaaag aacgcagaat cgtactcgtc
    17521 cgcctcaatc acgaagaatg gactgttacc ggcacgagcc gaaatgccga aattaccggc
    17581 aacaccgcca attaaaaagc cggtatcaat cccattttgg tctaaaatcc acgctaacat
    17641 tcctgttgtg gtagttttgc cgtgcgtgcc ggaaaccgcc agcacccatt tgtctttaag
    17701 caaatgatcg tgcaaccatt gcgggccgga ggtgtaattg agttggttgt ccaacacata
    17761 ttccacgcac ggattaccac ggctcatcgc attaccaatc accactaaat caggagccgg
    17821 ttgcagttga gcaacatcgt aattcgggat aatttcaata ccgtgagcag ctaaaaaggt
    17881 actcatcggt gggtaaacat tagtgtctga gccggtcact ttatagccaa gctcacgggc
    17941 aatcattgcc acaccgccca taaaggtgcc gcaaatgcct aaaatatgga tatgtttttt
    18001 catcttttta tatttaaaat gttagaatca tcccctctcc ccttgtggga gagggataga
    18061 ttttttcttc gtgcagaaga aaaaatcagg gagaggggta agcggtcatt tttaggctta
    18121 atattgtaag ctccctctct ctgaaaaata tttctgaacg aaatattttt cggtctcaat
    18181 actcgctacg ctcgctcctg tggagccgtt ggcaaagcca acgttcaaat gtaaacattt
    18241 gtcccacaag gggagaggtg cgctttagat gaggcgtacc atccctcgtt cacatcaatt
    18301 aatcaatatt cttcaactct tcttccgaaa gctgctcttg ttggctttgc tcaacattgc
    18361 catctttcac tttaaattca aggttttgga aataagcttc acggaaggta acataagggt
    18421 cttgagcttg ctctaacaac gcatcttgtt ctaataattt agaacgggta tctacccctt
    18481 gtaccacaaa tttagcgata gaccaaggtg acccaacata agtcagcacc gaataaccgg
    18541 tttccaccgc actaccaata ccttgacgag gtgtgattgc tccataagcc ggcatcataa
    18601 tataggagcc ggaaggcacg ccgtgagcgc ctaaactctc acctaaacca cgttgtccgt
    18661 tatttaaacg taacccctca tctaaactcg cccagtcaat taacccacct aaaccaaaca
    18721 cagtgttgat ccagaagcgg ttgaagtgaa ccatcgcttt tttaccttct ccttcaatta
    18781 agcggtttac aaagctcacc ggctcatcaa ggttattagc aacattaatt aagcctgttt
    18841 taaccgggct tggtacatac tctttccaac ctttagctac cggttttaac acataagggt
    18901 ctaaatagtc gtaattgact ttccacatcg cacggttaaa cccctcaagt gggtcgtctc
    18961 gcacgccggt ttctgggtta atgcttgatg aacaagcggt taaaaatgcc acactgagta
    19021 gcataaacat cggtttgaac gacttgagtt tcataaattg aaccttttgc agagaaattt
    19081 gtccattgta gcgaagttga taaaaaatac aaaacaaaaa gccgttttgc ctctagaaat
    19141 ctagacgtct agattgagat atagttcgct tttgattaca atacaggcaa catttaagga
    19201 gcaaacaaat ggcagactgg aacggcgaat atattagccc ttatgccgaa cacggcaaaa
    19261 aaagtgaaca agtcaaaaaa gtgacggtat ccattccaat taaagtattg gaaattttaa
    19321 ctaatgagcg aacccgtcgc caaatcaaaa atcttcgtca cgcaaccaac agcgaattat
    19381 tgtgcgaggc ttttttgcac gcctttaccg gtcagccttt gccgaatgat gaagacttga
    19441 tgaaagacag ggcagatgaa atccctgaag cggcaaaaca aaaaatgtgt gagctgggaa
    19501 tagacccgga cgaatggcaa tattagacac accttgcaac tgcgaggttc tttttatgtt
    19561 ttaaggagac tttatgtatc aacaattaac aacagaagca cgttgggctg tgttgcttac
    19621 gctgatttat ctgctcggct gggtaggttt tgcttacttt tcaccgcaag gcagaggcat
    19681 tttcggcttt ccgatttggt ttgaactttc ttgcattttc ttacccgtac tatttagctt
    19741 agttgccacc attgtcgtca aaaaagtgta taaaaatatc gatcttgagg tgaataatga
    19801 atagtgaaat gattttaccc ctgattgctt atttaatttt tgtgtttggc gtagcgtttt
    19861 atgcttaccg taaacgccaa ggcggaagct ttatttcgga atactatatc ggtgggcgtt
    19921 caatgtcggg ctttgtgtta gcaatgacaa ccgccgccac ttatgtgggg gcaagttcct
    19981 ttatcggtgg gccgggtgct gcctataaat acggtttagg ctgggtgtta ctggcaatga
    20041 ttcaagtgcc cgcagtgcta ctctctcttg gagcattagg caaaaaattt gccttacttg
    20101 cccgcaagca taatagtgtc accattaacg atatgttatt agcccgttac caaaacaaat
    20161 ttgtggtttg gattgcagga ctagccttat tactttcgtt ttttgcgatg atgacggtgc
    20221 aatttatcgg tgccggtcgc ttacttgaaa ccacactcgg aatcccttac caaacagcgg
    20281 taatgatttt tgccatcaca gtcgggcttt atacctttat cggcggtttt agagcggtgg
    20341 tgctaaccga tactattcaa ggtttagtaa tgatagtcgg cacaagcatt ttactcgctg
    20401 gtgtgattta tgccacaggc ggagtggaaa atgcaatgca cacccttgaa gccattaacc
    20461 cacaacttac caccccttac ggcattgacg aacgcccgct tgatttcacc tttatgactt
    20521 cattttgggt attggtttgc tttggtttaa tcggcttacc gcatattgcg gtcagaagta
    20581 tggcatgcaa aaacagccaa gccttgcacc gagcaatgat tatcggcacg gtagtcattg
    20641 caattctaat gtttggaatg cacctttcag gcgtattagg cagagcggtt gtgcctgatc
    20701 tcaaagtgcc ggatcaagtc attccaacac taatggtaca agtgctacca ccggtggttg
    20761 ccggtatttt ccttgccgcc ccaatggcag cgattatgtc ttcgattgac tcaatgttga
    20821 ttcagtcgtc ttcaacctta attaaagatc tctatctggc aattaagccg aatgccatta
    20881 ataacgagaa aaaaatcaaa ttgttctcca ctattactac tcttactttt acggtattac
    20941 tcgtgtttgc cgccctaacc ccgcctgaga tgttaatttg gctgaaccta ctctctttag
    21001 gtggtttaga agcgactttc ctatgggtaa ttgtactagg gttgtattgg gaaaaggcaa
    21061 atgccaccgg tgctatttac tcaatgctgg caggcttaag ttgttatgta ttaatgacta
    21121 cctttaagat tgctattttt agcttccacg ccattgtgcc ttcactgcta attggtttga
    21181 ttgctttctt aatcggcaac cgatttgctc ctaaggtgta aaataaaata ggcatagtgg
    21241 tatggaagtt cactatgcct attttgcaaa atttccgctc aattcaaccg cttgtagtta
    21301 ataagtggca ttattttctg gattattctg cttagtcgcc attctaagta acgtataacc
    21361 taaaatcgct gaaaccgcag agccgagtaa aatacctaat cgagctagag cggtaatact
    21421 ttccccagcc tcacttacat caaaggcaag acttgctaag aacatcgaca ttgtaaaacc
    21481 gataccgcat agcaccgcaa tggcaaaaat ttgcttaaaa ttaacccctt gcggcaggct
    21541 ggcaaggcgg aataatactg ctaaataact aaaaccgaat acacctaagg ttttgccgat
    21601 aattaagccg agcgcaatac ctaacggcaa tggtgatgag agttgctcca ttcccatttc
    21661 taataagtaa acgccggcat tagcgaaggc gaagatcggt aaaatcatat aagcacacca
    21721 aggggcaaga atatgttcta gctcctctgc cggtcgttcc ccatgtttac ctttcagcgg
    21781 tacgcagaag ccgatgatca cgccggcaag ggtagcgtga acccctgatt ttaaaacgga
    21841 agtccatagc actaagccta ctaccaaata agcacagagt gaggtcactt taaagcggtt
    21901 aagtagcact aagccgataa tcgcaatcgc ggcaatagtt aaggcttgca cactgatttc
    21961 ttgcgaatag aaaatggcga ttaccacaat cgctcctaga tcatcaataa tcgctaatgc
    22021 caacaaaaat gcctttaaag ccaatggcac acgagtgcct aataacgcca caatgcccac
    22081 cgcaaaggca atatcagttg ccattggaat tgcccaacca ttatgatatt cagggtggtt
    22141 ttgattaatc gcccaataaa taatcgctgg aacaatcata ccacctactg ctgctatcgc
    22201 aggaaaaata gctttcttat aacttgaaag cgaaccttca aacaactctt tttttacttc
    22261 cagccccacc aacgtaaaaa acactgccat taagccatcg ttaacccaga gtaatagcgg
    22321 tttattcaag gcaaattcac caaactgtac actaacaatc gtttgtaaaa actcaaaata
    22381 gaaatcactt aaggaggtgt tggcgcacac aattgctgca aaagcaaaaa ccagaagcaa
    22441 tacgcctcct gaggcttcag attttaaaaa ttcttttaat ttttccactt aactttctcc
    22501 tattaatatt tgtttattgt attttcattt ctatacattc catcttttac caaaaatttt
    22561 gcgaagatca aatagaaaat ttgataaact agaactaact cgcattttat tgctccatat
    22621 gattagaaat taacctaaaa tattaaaatt ttgttatgac acacgattgg ctctattggg
    22681 cattagcctc tgcacttttt gcagcattaa ccgccatttt tgccaaagtt ggcttacaag
    22741 gcgtagattc tgatttcgcc acttttattc gcacggtagt tattattatt gcacttattg
    22801 cctttctcac ttacagcgga aaatggcagc cgttagatag cttgagcagc aaaaactggc
    22861 tgtttttaat cttatccggc ttggcaacag gattgtcttg gtcggcgtat ttcaaagcat
    22921 tgcaaatggg taatgcttcc caagtcgctc caatcgataa attcagcttg gtgttagtta
    22981 ccctttttgc agtaattttc ttaggcgaac gcccaagcgg acaagattgg cttggcattg
    23041 gcttagttgc tggtggcgta ctgttacttg ccttcaagcg gtgattttta tgcaaaattt
    23101 tgcaaatatt gaaattgcgt ttattcatcg gaaagcacct ctgccgagtg atttctccta
    23161 ccctgaaatg cccggcggtt taactgaaaa acaggtgcaa aaatggcaaa gccgccgagt
    23221 cgcctttttt ctgctgacgg aattgtttaa aaaacaccat ctggatttag atttattagc
    23281 tgatatgcaa cgctccccaa gcggtcgcac ttttgtcgat tctgagcaaa ttgactttaa
    23341 catcagccat tcaggggaat ggatagcggt cattttttcg tattcttttg caaaattagc
    23401 ggtcggcatt gatattgaac acccacaaaa aatcagacgt taccacgatt taatctgcca
    23461 ttacggaaac gctgaagaac aaaatgtttt attagccaac cactccccca ttctaagcaa
    23521 cctcgccgaa cgcttttatt tgagctggtg cttgcgagag gcgatattga aatcgcaagg
    23581 ggtggggatt gtgaaactgt ccgaagtaaa acatttaccg ttagaaaaac agatcttttc
    23641 cgcccattgt ccgaaaggca agctgcattt tgtgagcgaa ctgccgttct atttaagcta
    23701 cttctatcaa caacctcaaa atatgctatt atctgaacct ttgctatacc attggcaaaa
    23761 cgggcagttt cagcctataa agtgccaatc acttgtttat gatgttaatt aaggataacg
    23821 aatgcctaaa aaatctttag aagaacacca ttccagtttt ggcaaaattg cttccgaaac
    23881 ctttcagtgg attatgaata ttgccttgct agtaacagga gcattgcttt cttactcgct
    23941 gtttgctgaa gcctattcac tctatgaact ttcctttagc gacagtgaga aattccaaat
    24001 tgtagaaaaa atagtaattt tctttctcta ttttgagttt cttgcgttga ttgtgaaata
    24061 tttcaaatcg aattatcact ttccgttacg ctatttcctc tatatcggga ttactgccat
    24121 ggtgcgtttg attattgtcg atcattctaa tgcgttgcat acactattat tcgcactctc
    24181 tattttggtg atgattatag cattatatat tgtacacacc gatcgtttac ataaaagcta
    24241 ggaactaata tgaagctaac ccaatatcag cacaatgatt tacagattct aaaccgagaa
    24301 accgtctata aagggcattt tgagctacaa aaaatcactt tccgccataa gctgttttcc
    24361 ggtgaaatga gcggtgaagt ggtgcgtgaa ctcttaatta aaggcgaagc ggcggcttta
    24421 attgcctatg atccaacctt agataaggta gtattaattg agcaagtgcg gattggagct
    24481 tacgatgcag gacagaaaaa atccccttgg ttgctggaat tggttgccgg tatggtagat
    24541 aaaggcaacg aagagccggc agaagtggca atgcgtgaag ccaaagaaga agccggcttg
    24601 gaagtcacaa cagtgcaaca cgccttaagc gtatgggaca gtcccggtgg acaactggaa
    24661 cgcttgcacc tgtttctcgg cttgattgac agcacccaag tgaaatccgg cgaggtacac
    24721 ggcttactgg aagaagaaaa tgaagacatt ttggttcacg ttgtaagccg tgaacaggca
    24781 tatcaatggg tagaagacgg cacaattgac aatgtgattg cggtaattgg gctacaatgg
    24841 ttgcaattaa
//
LOCUS       DANLRW010000028        24784 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.028, whole genome shotgun sequence.
ACCESSION   DANLRW010000028 DANLRW010000000
VERSION     DANLRW010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24784
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.028"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..388
                     /locus_tag="PXA71_000922"
     CDS             <1..388
                     /locus_tag="PXA71_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2572 family protein"
                     /protein_id="HDL5105051.1"
                     /translation="KKPTKEKYIHFTHLADYLDLSNVPNQEIYTIHSLAELPSSSERE
                     PKIVLAKNAINENLPQEFYGIVITDYLFDITGKKMYGTLYSSYDNAREERNLTFKKEV
                     LAELEARYSAWRYLPYSEHLMGAVDD"
     gene            381..674
                     /locus_tag="PXA71_000923"
     CDS             381..674
                     /locus_tag="PXA71_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5374 domain-containing protein"
                     /protein_id="HDL5105052.1"
                     /translation="MIKYKAETALSLLVAITLFAIVVLSFSQWQSAQNHRLNQHFQQQ
                     QAVMILENQLALKLAGLDCESSITQNQIRYQIQCSGNRLTIRFPLGKIELNND"
     gene            723..4013
                     /gene="recC"
                     /locus_tag="PXA71_000924"
     CDS             723..4013
                     /gene="recC"
                     /locus_tag="PXA71_000924"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HDL5105053.1"
                     /translation="MFTLYQSNQISSLAEMLVKIQQVNPLEDPFEPETILIQSQGMAQ
                     WLQMQIAELNGVMGNCDFLYPTTFLWQQYRLLFPELPKENIFERSSLVWRIMRLLPSC
                     LTLSEFAPLKRYLGDQPNKEQYQLKLYQLSAKIAELFDQYLVYRPHWLVSWEEGNLQA
                     IENEIKIATAAKPIDFDLIRADMKWQSHLWQQIVSDLQSESDEQVFTTSHRAYLQQNY
                     FAKLDDLTETEKAKLPKRIFIFGISSFSPLQLAVFKKLSEHCDIHLFFFNPSEKYWGD
                     SVEEKVWQKLALSHKISQDDLDNLLAEQRNKLLNLWGKQGRDFLAQLIEFEPNTMDVF
                     VEPEENSNLNKLKKQIFSLENDATITDLTADNSLQIHSCHSPMREVEVLHNQLLNLFE
                     QDSTLLPKDIIVMSPDINKYAPYIDAVFSRYNTGNRDPRYIPFSLSDQAFTQVDPIIH
                     SFLQLLAMKESPFNAEELFDLLEVNAIQTRFGFSTEDIHTLRVWVRNAGVRSGVEIEQ
                     PHWQNYNSWENGLNRLLLGSSLKEEQGIWENTLAFGDSYGLNAELVGRLASFIEALLA
                     WVNFLQTPQPLAAWQQAIKNLTADLYQENAENAASILLLNNVNDQIIEQISATHFSDD
                     LQIEVLALLFEQQLSQHSQQLNFLVGRVNFATLLPMRAIPFKVICLLGMNEADFPRQQ
                     QINSFDLMQYAPKKGDRAKRDDDRYLFLEALLSAQQMFYISYIGQSQKDGKEMLPSIL
                     VSQLLDAMNEALTPECKQQLSDEVEVLVRKQPLSVFSKKNFTHPRDHAYNAEWIIKPT
                     VAVQDFLSEPLTNESVASLELDELISFVQNPIRFFFLKVLGISFNTYDDTIDESEIFE
                     MSGLDNYRILNELLTINLAQQQRFFAEEQLKGNLPASYFAQIATQDLIGKITEMQAAL
                     SHYLASESRILSVNREVELERQTLTLNGNIANLYQNEVVLWRVGHLRDKDKIQTWIYH
                     LLLCAYFPEKTVKFYYREGEQVGVLSFETVSQIEALSQLSIYLNAYLDGLSQAQLVIY
                     DRIEEYLKGDGTNSEQVLIDLAEKDERDGSYLHRLLAQTKELDSQAIHQRTQSWFSLM
                     NQKIAKGD"
     gene            4149..7094
                     /gene="ptrA"
                     /locus_tag="PXA71_000925"
     CDS             4149..7094
                     /gene="ptrA"
                     /locus_tag="PXA71_000925"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HDL5105054.1"
                     /translation="MKLSFLTQFVAAAFALNVMTYPAFAEVAKNSEKTTASQPQSQLG
                     FELIKQSINKSPNDKAIYQGIKLDNGMEVLLISDSQANKSLMSAIIPIGSMDDPISQQ
                     GLAHYLEHMILMGSKNYPETNSLDGFLTKNGGMNNASTASHRTAYYLQVNNEAFSEAV
                     TRLADTLAFPLLLETNAKKEVNAVNAEMVRAKSHDGHLLHSVNLATANPAHPATKFAV
                     GNKETLSDKPDSKLQTELEQFYKQHYSANLFKVVLYSNQSIEQMAKLAANTLGKMENK
                     HFSIPQTAEPRYRDEDKSVFIQYKPVKSNKMLVIGFDFPNDEMQFKHKTGKYIAYMLN
                     NNTDGTLSDYLIKQGLSDGGIEAVSSANIGRDRGSFDIYIELTDKGLSEQDQIISLVF
                     QQIEKIKQEGIQESYFSEVKESLKQDFQHLQVEKNMDFVEFIADQMLHFPLEHVIDQP
                     YLTETMDNEAIKAKLAAMNIDNARIMLVSDTAKTDKKTPYFEAGYSVAKITQEQKQKW
                     LDFSKNPQLNLPELNPYFTTDFTLNKVETGLTKPKLINDQAGNLIYTMPSVYFTNEPK
                     AKIGVGFNIRPRKDDLKSLTAASILGYMNNLAQTKLDFQSSVAGMNLSLAPAANGLAL
                     SAEGYTQNLAKLMLDSVKQFSRFEFNEDVLAQAKQRLHQELDRNEKENSLNQANAALS
                     RFASYPYFDVPKQREMIDSITLADIEQLRQRILQQSSGFKLLSVGNLSAEQVSALAED
                     LQAVIKNQKSANATGQYVDVSTSQRKINVIKSVPNEDNALLMAFMPNGYNELESLTRA
                     KLLRSIISRWYFDDLRTDKQLGYVVYATDNIIGKTAGIQFMVQSPNTTPAGILEHNER
                     FFTQSFERLKNLSDEEFGKYRDSLVEKLQYKPESLAEEFSEFGSDFSRNNPKFDRLQQ
                     VIELTKALTKADIVAFYQKAVIEKQGFVFVSQAVGTKTKAEDVAKFDGFEQIESIEKL
                     QREFEIKDY"
     gene            complement(7143..8789)
                     /locus_tag="PXA71_000926"
     CDS             complement(7143..8789)
                     /locus_tag="PXA71_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5105055.1"
                     /translation="MKFPTLTKISASVLAVLALAACDDKSNENKPTAAAAKPQTEKTF
                     VNCVSRSPTGFSPILMMDGLSYNASSQQIYNRLVEFVPGTTDIEPALAESWEISEDGL
                     TYTFKLRKGVKFHSNKDFTPSRELNADDVVFSFNRQLDKNHPYHTVSNGTYPYFNAMK
                     FPTLLKSVEKVDDSTVRITLTKRDASFLSSLGMDFTSIYSAEYADKMMKAGIPEAVDT
                     TPIGTGPFVFSGYVLDQASRYVANKEYWKGKPDIDRLIFEIVPDATTRYAKLQSGQCD
                     LMDFPNATDIEKMKNDPKINLLSQPGLNIAYVAFNTEKAPFDNVKVRQALNLAVDKKA
                     IIDVVYQGNGFAAKNPLPPTIWGYNDSLADSEYNVEKAKQLLAEAGFPNGFETELWVQ
                     PVVRASNPNPRRMSEIIQADWEKIGVKAKLVTYEWGDYIKRTKAGELTAGTYGWSGDN
                     GDPDNFLSPLFGTPNIGNSNYARFTNPELDALLEKALGSSDKAERTKLYEQAQVILRE
                     QAPWINVAHSINFAPTSKRVEGYKQSPFGYTYLYPVKIVD"
     gene            8865..10955
                     /locus_tag="PXA71_000927"
     CDS             8865..10955
                     /locus_tag="PXA71_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL5105056.1"
                     /translation="MIFANQSIELDTVNVIATRDPSKFADTPQKQTKDALLVKQATSV
                     AAALKALPNVDVQGGARAIVQKPSIRGLSDNRIVQVIDGVRQNFDLAHRGSYFVPMSL
                     IQEIEVIKGPSSSLWGSGALGGVVAMRTPNALDLLKNNDKFGAKIRQGYQTANNLSET
                     EASVFAANDRFDALLSGFYNNADNLRSGEGKELNNTGYKQAGGLVKFGWQINDTHRLE
                     LSHRHSQFKQTAPGNNEVENQFTDNDVSAQISAWHAANPGNPSNPVYLAKMLAFYGQL
                     HSSLGSVSYLSDQKITDKSTSLNYYFNPSNPYLSTQVTLYSNSTTENEHRKISGVEDQ
                     TKLSTRGVNIRNHSELSWFSLVYGVDYMLDKVATQRGRNNTDAQYRANPYDAKSKTTG
                     AYLIAHIPLFDEKVVFSPSVRYDRFDTSSETVKYKDSHWSPAAKLTWKATNWLDLTAK
                     YNEAFRAPSMQERFVSGSHFGTTVRGLPINNIFLTNPNLRPETAKNKEVTFNVHFDNV
                     ISQGDKFNFEATYFRNDVKDLINLQVFKANPTSPMEFIPTRSQYQNIANARLSGIELQ
                     TRYQTERLAVFANYGSTKGKDKDSGEALSNIAASKIGFGVNYAVVQDKFTVGANVTRY
                     QAQHRVPKNHGVTYQGYTLTDLHATYAPLKGEWKNLRLDVAVENLFDKKYQPAFSLME
                     GSGRNVKLSAAYSF"
     gene            11026..12714
                     /locus_tag="PXA71_000928"
     CDS             11026..12714
                     /locus_tag="PXA71_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL5105057.1"
                     /translation="MKFYPSLIASAVSFAVVLSGQAAVNVPDAGSLQRELDQRQAQQK
                     VKPSGEWFNQAAKAPYTATDGQELTFPLTQVQVFDRTNQEISTPELAPILANYVGKAV
                     SLTDLSNLANEITEFYRSHNYLVAKAILPPQEIEQGKVKILLFKGNVGEVRLQNQSAL
                     SDKFVARLANTTVNGSEFILKDELEKFALTMNDVPGVNTGLELSAGKQAGEANLLIKL
                     QNAERFSGYVSADNQGNKNTGRYRLATGIKANNLIGWGDELKVDLMSSNNANLKNARL
                     DYSSLIDGYATRLGLTANYLDYELGGNFKALQSQGHTHNLGAYVLHPTIRLPDFRLNT
                     KVSFNHQRLTDKQQAVNVAQKRQVNSLTVGINGSWNSLKDGTSYFSLSALFGNLANHT
                     NEQAHYVATDFQPKSRFTVYQYSLSHEQALPKSFAFNLGVNGQFADKTLDSSQKMLLG
                     GLYGVRGHQAGVASVDEGHLVQTELKHYLPLFSKSLLTSSVFYDYGWGKYYKHSGFLA
                     RGVNNSVKLQSIGAGLSLSEAGSYAINASVAKPLGKKIENADKHQFWFSAIKTF"
     gene            12726..15542
                     /locus_tag="PXA71_000929"
     CDS             12726..15542
                     /locus_tag="PXA71_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HDL5105058.1"
                     /translation="MFKRNAISLCILTACSGLAYANTADLPQGERVRVGTATIERTTD
                     KMTVNQSSNKVQIDWNSFDIGKNKEVEFKQPTEMAVAYNRVTGGNASQIQGKLTANGK
                     VYLANPNGVLITKDAEVNVGGLLVTTKDLEKISENGTKDKFSRKLAKEGKILNQGKIT
                     AKGERAFVVLVGDDVANEGEINAKNYYHKETKKVTECYDDSWSLVKQCYDFDKEIVKS
                     TSGEVHLSSGENVTFTLSDRYIDVALDDNTVNSIIKNDGAIIANGDITLTAKGRNQAL
                     DSLIINNGVLQANKVQNKNGTIILSAGETQLHEKSQIKGEKVSFAEASYYGPTEDIKV
                     VSKTGSKVTAPVIDFKGKTVNIQGEFGREDSTDLYNDELQILKTTVNIEVPNTEDIRI
                     ADTDNGGSGSFIQAGALASLLANNGRVNVQGKGFDVSGKLNVNAFKQTDSVLKFINQA
                     GINIHNADIHANGRLFFVTNLPNDTDFQSNIRITDSKINLGNGSMGFGRSSKRWEMHD
                     VVRRADTELRKKFNLDMKNVELNQVDDFVVAGGFQQVNLDNVKARGKTNFYLDSGNSR
                     MFVGEQIYEYGVTDIEKRTQLANLDQRRKRWNSDNYDETDLNWEYNQRFDGFAAKHNH
                     RAPIADTEINIANSDISLDNGFVHLMAEKINLDDSKINITFNQDNSLDESTQINRLGL
                     NGKVSMKNSHINVVGDEKDGISPARHYATMFLVGELLGEKSSIFLKSHQGAVLRTDSN
                     VTIAGKNSKDDLKITAITTGKKMGNEIIGPDGLPTSEDNDANASNTAFAIGYEPNATA
                     IVENASITALAPNGGLAYTGTSKTQIDAKDNATFTFFEKPRAGYDKLLGDIKGNPDKL
                     TPRDFARLYDNIKGIKASSLSEQQLGLADTAKKTSEHTLANSLDVENLVSVTVCDEQN
                     KCEERMLGNKNTNAKVIVGDIKFE"
     gene            15665..15796
                     /locus_tag="PXA71_000930"
                     /pseudo
     CDS             15665..15796
                     /locus_tag="PXA71_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(15851..16612)
                     /locus_tag="PXA71_000931"
     CDS             complement(15851..16612)
                     /locus_tag="PXA71_000931"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDL5105059.1"
                     /translation="MKLNQAQIQNALICGQAVVFDEIDSTNEYLLTHHQRLENGTVCL
                     AEKQTAGRGRRGRTWYSPESENLYFSILWHYPMEQAADLPPLSLVVALIIAESLTVQN
                     VKDIQIKWPNDIYYQGKKMGGILLETQANRNGLDVVIGIGLNLGMAKVDENIVTQAWA
                     DLSQYHFNRNELVCRLAYELQKNLKIYPLVGFAHYAERWQSFDLFRHKAVKLITEAEE
                     IHGISQGINEQGELILKQGDNLRYFGIGEISLRAD"
     gene            complement(16624..17655)
                     /gene="murB"
                     /locus_tag="PXA71_000932"
     CDS             complement(16624..17655)
                     /gene="murB"
                     /locus_tag="PXA71_000932"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDL5105060.1"
                     /translation="MMKHSLTPFHTFHLPAKATQIIEFTTVEQLLSEWQKAFNAQLPI
                     LILGQGSNVLFLEDFDGVVLVNKLKGITHHEDEHFHYLHVQGGENWHELVKWTLAHNI
                     AGIENLALIPGVASSAPIQNIGAYGVEFEQVCDFVEVLNLRSGELFKLSKSECEFGYR
                     ESVFKHQYRDEFAIISVGLKLAKAWKPVLSYGSLAQLNPETVTPIQIFDEVCAVRSSK
                     LPNPDEFGNAGSFFKNPVISNEQFAPIQAKFPAIPHYPQADGTVKLAAGWLIDQTGLK
                     DLQIGGAAVHTQQALVLINKENATGQDVLALAKTVRQRVKEKFGVEIQPEVRFIGKNG
                     EVDSEKITR"
     gene            complement(17759..18433)
                     /gene="crp"
                     /locus_tag="PXA71_000933"
     CDS             complement(17759..18433)
                     /gene="crp"
                     /locus_tag="PXA71_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010787261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HDL5105061.1"
                     /translation="MQDMTLSTAPLENVTPPPSIHDPAVEWFLTHCHIHRYPAKYTLI
                     HAGEDAESLFYIVNGSVSVYIKDDETKEMLLTNLGTGEFVGELSLFEEKVQQRTAYVR
                     TKGPCEIAEISYKKFKQLVHLNPDILMYLSAQMARRLRQTSRQVGNLAFLDVAGRIAQ
                     TLLNLAKMPDAMTHPEGMQIKITRQEIGQMVGCSRETVGRIIKMLEDEGLISAHGKTI
                     VVYGAR"
     gene            complement(18495..18713)
                     /locus_tag="PXA71_000934"
     CDS             complement(18495..18713)
                     /locus_tag="PXA71_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HDL5105062.1"
                     /translation="MIIPWQELEESTLHNILDSFILREGTDYGERELSLAEKRERLLT
                     QLKADKVVIVWSELHESLDIKDKKSFLG"
     gene            complement(18716..19321)
                     /gene="slmA"
                     /locus_tag="PXA71_000935"
     CDS             complement(18716..19321)
                     /gene="slmA"
                     /locus_tag="PXA71_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HDL5105063.1"
                     /translation="MTEPKIKMPKKSVVERRQQVLEVLISLLNSEEGMQRITTERLAA
                     AVGVSEGALYRYFPSKTKMFEALIEKIEQTLTSYIHANKRQDSSANSVRAILYVILEF
                     ARKNPGVTRILTGHALMFEEELLKARVAKFFDNLELQFANILQLSKLRERKSFEDERA
                     LAGYLVNFCEGQFLRLVRSNFSYNQHQHFEKQWAFIKPLFD"
     gene            complement(19333..19788)
                     /gene="dut"
                     /locus_tag="PXA71_000936"
     CDS             complement(19333..19788)
                     /gene="dut"
                     /locus_tag="PXA71_000936"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HDL5105064.1"
                     /translation="MKQIDLKILDSRIGNEFPLPAYATEGSAGLDLRAMLNEPLTVKA
                     GETVLIPTGISIYIADPNLAAVILPRSGLGHKNGIVLGNLVGLIDSDYQGELKVSLWN
                     RSQADFTVNVGDRIAQLVFVPVVQASFNIVQEFEQTDRGEGGFGHSGKQ"
     gene            complement(19822..20661)
                     /locus_tag="PXA71_000937"
     CDS             complement(19822..20661)
                     /locus_tag="PXA71_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL5105065.1"
                     /translation="MKKYNIVFSADKNYLPYLEIALKSLLAHHNHLSIFILSTGDISH
                     HWIETLRPYLENRYSTLRLGYLDSNNLANFNSNGYITNSTYLRYYIEELFEHSDSPYW
                     IYLDCDLVVNGNITDPFTNLDFSFGSIAAIADPYVNKLKNHPYIYKNYFNAGVFYLNA
                     KHFSKQPFIQLTERFKENLPFGDQDILNYCFQYNWIELDRKYNYQTEHLLDDIAQQKI
                     SPNYIPHIIHFTGGIKPLEGKFNSSYVENVASLFRFYHNTSWEILTELPLGTIQLKPF
                     ITE"
     gene            complement(20648..20830)
                     /locus_tag="PXA71_000938"
     CDS             complement(20648..20830)
                     /locus_tag="PXA71_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5105066.1"
                     /translation="MKIMQLTSNQYINDIKHILLSARQKAYQAVNSAMVEAYWKIGER
                     IVQEEKNMVKDQNEKV"
     gene            complement(20827..21144)
                     /locus_tag="PXA71_000939"
     CDS             complement(20827..21144)
                     /locus_tag="PXA71_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105067.1"
                     /translation="MKLLVSHFHQGEGKFPTFSAGTAVRLGSECVNYPNWFACEIDGW
                     KTFVPSHFISEDKLICDYNPTELVAAQGERVEFLELHYQWAIVKRENEIGWLPCEILR
                     VIG"
     gene            complement(21144..22346)
                     /gene="coaBC"
                     /locus_tag="PXA71_000940"
     CDS             complement(21144..22346)
                     /gene="coaBC"
                     /locus_tag="PXA71_000940"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDL5105068.1"
                     /translation="MLQNKKILVGISGGIAAYKTIEFIRHLKKANAEVRVVLTPAAEA
                     FVTPLTLQAISGNAVSTSLLDPQAELAMGHIELAKWADLIVIAPASADFIARLRMGMG
                     NDLLSTLCLATASPILLAPAMNQQMYKQIAVQENLSVLVNRGVQLIGPNSGFQACGDV
                     GAGRMSEPEEIYQAVLAHFSNNQDLEGLNVTITAGPTREAIDPVRYISNHSSGKMGYA
                     IANAFAERGAKVTLISGPVNLPTPKNVERINVESAVEMEQQAVKFAQKSAIFIGCAAV
                     ADYRMAAVSDQKIKKTDANDELTLKLVKNPDIIANVANLAENRPFVVGFAAETQNVAE
                     YAKSKLERKNLDMICANDVSGGQVFGQDQNALHLFWKNGEKTLPLADKSKLAESLVQE
                     IVKHYREK"
     gene            22496..23233
                     /gene="radC"
                     /locus_tag="PXA71_000941"
     CDS             22496..23233
                     /gene="radC"
                     /locus_tag="PXA71_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HDL5105069.1"
                     /translation="MEEKMNDFFDEDSQEPTMMPREKLLTQGAASLTDSELLAIFLRT
                     GTKAVPVLALAESVLMAFGSLRQLLNANIDDFCKIYGLGKTKYIQLQASKEMTKRYLA
                     QQMEFSEMIQAPYMAIMYFQTELEEEEREVFMVLFLDNQNRLIYKEKMFFGTINQTAV
                     HPREIIKRALKYNAAAIIVAHNHPSGSCLPSESDRSLTKKIEMACELVDIRFVDHIIV
                     GKGDYFSFEEEKLEMKEHSFLQISDRK"
     gene            23465..23701
                     /gene="rpmB"
                     /locus_tag="PXA71_000942"
     CDS             23465..23701
                     /gene="rpmB"
                     /locus_tag="PXA71_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_004997628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDL5105070.1"
                     /translation="MSRVCQVTGKRPAVGNNRSHAMNATKRRFLPNLHTHRFWVESEN
                     RFVTLRLTAKGMRIIDKKGIDAVLAEIRARGEKI"
     gene            23713..23883
                     /gene="rpmG"
                     /locus_tag="PXA71_000943"
     CDS             23713..23883
                     /gene="rpmG"
                     /locus_tag="PXA71_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDL5105071.1"
                     /translation="MAAKGAREKIRLVSTAETGHFYTTDKNKRNMPEKMEIKKFDPVV
                     RKHVIYKEAKIK"
     gene            complement(23964..24719)
                     /locus_tag="PXA71_000944"
     CDS             complement(23964..24719)
                     /locus_tag="PXA71_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5105072.1"
                     /translation="MSKNRLEQILLFLKNHNIATVEQLVKVTEASPATIRRDLIKLDE
                     EGVVIRTHGGVSLNQFIPFQPTTNEKQFKQIVEKERIAEYAVSLISPGNSILLDAGTT
                     TLCIAKKIAHMPLRVITTDLHIALLLSEYKQIELIITGGRVDNSSQSCIGNHSLTLLE
                     NINPDIAFVSCNSWSLEKGVTAPTEEKANLKRMLQQNAKQKVLVADSSKYGKYSLFRA
                     TQLDNFTQIITDKGLPIEYSQALSSNDFKLSLV"
BASE COUNT         7410 a         5067 c         5297 g         7010 t
ORIGIN      
        1 taaaaaaccg actaaagaga aatatattca ctttacccat ttggcggatt atttagattt
       61 atcaaatgtg ccaaaccaag agatttatac tattcattct ttagctgaat tacctagtag
      121 cagtgaacgt gagcctaaaa ttgtgcttgc taaaaacgca attaatgaaa acttaccgca
      181 agagttttac ggcattgtga taaccgacta tctgtttgat attaccggca aaaaaatgta
      241 cggcacgctt tattcctctt atgataatgc ccgagaggag cgaaatttaa cgtttaaaaa
      301 agaggtactg gcagagcttg aggcgaggta ttccgcttgg cgatatttgc catattccga
      361 acatttgatg ggagcggttg atgattaaat ataaagcaga aacggctttg tcgcttttgg
      421 ttgccatcac gctatttgcg attgtggtgt tgagtttcag ccagtggcaa tcggcacaaa
      481 accacaggct aaatcaacat ttccaacagc aacaagcggt tatgatttta gaaaatcagc
      541 ttgccctcaa attagccggg ttagattgtg aatcaagtat tactcaaaat cagattcgct
      601 atcagattca atgctctggc aatcgcttaa ccattcgctt tccgttaggc aaaattgagc
      661 tgaataatga ttgaatcgtc cctcgctttg gaggacaata attcaattag cgaggcgtta
      721 ttatgtttac actttaccaa tccaaccaaa tttcatcact ggcggagatg ctggtgaaaa
      781 tccagcaggt aaacccactt gaagatccgt ttgagccgga aaccattttg atccaaagtc
      841 agggaatggc acagtggcta caaatgcaga ttgctgaatt aaacggtgtg atggggaatt
      901 gcgattttct ctaccctact acatttttat ggcaacagta tcggctgttg ttcccggagc
      961 tgccgaaaga gaatattttt gagcgtagtt cgttggtttg gcggattatg cggttattgc
     1021 cgagttgctt gacactatcg gagtttgctc cgctaaagcg ttatttaggt gatcaaccta
     1081 ataaagaaca gtatcagctt aagctctatc aactttctgc caaaattgcc gaattgttcg
     1141 accaatattt ggtgtatcgc ccccattggc tggttagctg ggaagagggc aacttacaag
     1201 cgatcgaaaa tgagataaaa attgcaactg ccgctaagcc gattgatttt gacttaattc
     1261 gagccgatat gaaatggcaa agccatttat ggcaacagat tgtatctgat ctgcaatcgg
     1321 aatctgatga gcaggttttt actacctccc accgtgccta tttgcaacaa aattacttcg
     1381 ctaagttaga tgaccttact gaaacggaaa aagccaaatt gccaaaacgc attttcattt
     1441 ttgggatttc gtccttctcg ccattacagt tagcggtgtt taagaaactc agcgagcatt
     1501 gcgatattca cctgttcttt tttaacccaa gcgaaaaata ttggggcgac agtgtggaag
     1561 aaaaagtgtg gcaaaaattg gcgttaagcc acaagatttc gcaagacgat ctggataact
     1621 tattggcgga gcaaagaaat aaactactga atctttgggg caaacaaggg cgggatttct
     1681 tagctcaatt aatcgaattt gagccgaata ccatggatgt ctttgtcgaa ccagaggaaa
     1741 acagcaacct caataaactc aaaaaacaga ttttcagctt agaaaatgac gccactatta
     1801 ccgatttaac cgccgataat tcactccaaa ttcattcgtg ccacagccca atgcgggaag
     1861 tggaagtgtt gcataaccag ctcctgaatt tgtttgagca agatagcact ttgctgccga
     1921 aagatattat tgtgatgtcg ccggatatta ataaatacgc tccttacatt gatgcggtgt
     1981 tttctcgcta caatacgggt aatcgggatc ctcgctatat tcctttttca ttatccgacc
     2041 aagcatttac gcaggttgat ccgattatcc acagtttcct gcaactgctg gcaatgaaag
     2101 aaagcccgtt taatgccgaa gaactgtttg atttactgga agtgaatgcg atccaaaccc
     2161 gttttggctt tagtacggaa gatattcata ccctgcgggt ttgggtgaga aatgccggcg
     2221 tacgttcggg tgtagaaatc gagcaacctc actggcaaaa ctacaattcg tgggaaaacg
     2281 ggctaaaccg tttattgctt ggctcaagcc tgaaagaaga gcaggggatt tgggaaaaca
     2341 cccttgcctt tggggatagc tatggcttaa atgccgagct ggtggggcga cttgcctctt
     2401 ttattgaggc tttattagcg tgggtaaact ttctgcaaac gccacagccg ttggcagcgt
     2461 ggcagcaggc aataaaaaat ttgactgctg atctgtatca agaaaatgcc gaaaatgctg
     2521 catcaatttt attgttgaat aatgtgaatg atcagattat cgagcaaatt tccgcaaccc
     2581 atttttcaga cgatctgcaa attgaggttt tagccttatt gtttgagcag cagctcagcc
     2641 aacattcaca gcagcttaat ttcttggtcg gacgggtgaa ttttgccacc ttgcttccga
     2701 tgcgggcgat tccgtttaag gtaatttgct tgctgggtat gaatgaggca gatttccctc
     2761 gccaacaaca aatcaatagc tttgatttaa tgcagtacgc cccgaaaaag ggagaccgtg
     2821 ccaaacgtga tgatgaccgc tacttgttct tagaagcctt actttccgct cagcaaatgt
     2881 tttacatcag ctatatcggg cagtcgcaaa aagacggcaa agagatgcta ccgtcgattt
     2941 tggtttccca actgttagat gcaatgaatg aagctttaac gcctgaatgc aagcaacaat
     3001 taagcgatga agtggaagtt ttggtcagaa aacaaccttt aagtgtgttt agcaaaaaga
     3061 attttaccca cccacgagat cacgcttata acgcagagtg gattatcaag ccgactgttg
     3121 ccgtacaaga ttttcttagt gagcctttaa ccaatgaaag cgtggcttcg ctagaacttg
     3181 atgaattaat ctcttttgta caaaacccga ttaggttttt ctttctaaaa gtgttgggga
     3241 tttcgtttaa cacttatgat gacaccattg atgaaagcga aatttttgag atgtcggggc
     3301 tggataacta ccggatttta aacgaattat taacgataaa tttagcacaa cagcaacgtt
     3361 tttttgccga agagcaactc aaaggcaatt tacctgcttc ttattttgct caaattgcca
     3421 cacaagattt gatcggcaaa attaccgaaa tgcaagcggc gttaagccac tatttagcca
     3481 gcgaaagccg tattttgagt gttaatcggg aggttgagct ggaacgccaa accctcaccc
     3541 taaacggcaa tattgccaac ctatatcaga atgaagtggt gctatggcga gtagggcatt
     3601 tacgagataa agacaagatt cagacttgga tctaccattt attattgtgt gcctatttcc
     3661 ctgaaaaaac ggtgaaattc tattaccgag agggtgagca agttggtgtg ttgagctttg
     3721 aaaccgtctc gcagatagag gcattatcgc aattaagcat ttatttgaat gcttatttgg
     3781 acggattatc gcaagcccag ttagtgatct acgaccgaat tgaggaatat ctcaaaggtg
     3841 atggcacaaa cagcgaacaa gttcttatcg atttagcaga gaaagatgag cgagacggca
     3901 gctatctcca tcggcttctc gctcaaacta aagagctgga ttctcaagcg attcaccaac
     3961 gtactcaaag ctggtttagc ttaatgaatc agaaaatagc gaaaggcgat taactacaag
     4021 cggtcgtttt tggctgaaaa tttgcaaaat gagaaggcga ataataattc gcctacctat
     4081 aaaaatagaa ttttttccgt attttactgt caatttatta ctacaatgct aatttcaaaa
     4141 ggagatgtat gaaattatct tttcttaccc aattcgttgc agcggctttt gccctcaatg
     4201 tgatgactta ccctgcattt gcggaagttg caaaaaattc tgaaaaaacg accgctagtc
     4261 aaccccaatc ccaactcggt tttgagctga ttaaacagag cattaacaaa agcccgaatg
     4321 ataaagcgat ttatcaaggt attaaacttg ataatggaat ggaagtgcta ctgatttccg
     4381 acagtcaagc gaataaatcg ttgatgtctg ccattattcc gattggctca atggatgacc
     4441 cgatttctca gcaaggttta gcccactatc ttgagcatat gatcttgatg ggctcgaaaa
     4501 actatccgga aaccaacagc ttagacggtt ttttaaccaa aaatggcggt atgaataatg
     4561 cctcgactgc ttctcaccgc acggcgtatt atctacaagt caataacgaa gcctttagcg
     4621 aagcggtaac acgactggcg gatacgttag ctttcccgtt attgctggaa accaacgcca
     4681 agaaagaggt taatgcggtc aatgcggaga tggtgcgagc taaatcgcac gatgggcatt
     4741 tattgcacag tgttaattta gccaccgcaa acccggctca tcctgctacc aaatttgcgg
     4801 taggcaataa agagacgtta tctgacaagc cggatagcaa attacaaacc gagttggagc
     4861 aattttataa acagcattat tctgcgaatc tgtttaaagt ggtgctttat tccaatcaat
     4921 cgattgagca gatggcaaaa ttggcagcca acactttagg caaaatggaa aacaaacatt
     4981 tcagcatacc gcaaaccgct gagccacgtt atcgtgatga ggacaaatcg gtatttattc
     5041 aatataagcc ggtgaaatcc aacaaaatgt tagtcattgg ctttgatttt ccgaatgacg
     5101 aaatgcagtt taagcacaaa accggtaaat atattgctta tatgttaaac aataatactg
     5161 acggcacgct ttcggattac ttgattaaac aggggttgtc tgacggcggt attgaggcgg
     5221 ttagcagtgc caatatcggg cgggatcgag gctcgtttga catctatatt gaactgacag
     5281 acaaaggttt gagcgagcaa gatcaaatta tttcattggt tttccaacaa attgagaaga
     5341 tcaaacaaga aggcattcaa gagagctatt ttagcgaagt gaaagagagc ctgaagcagg
     5401 atttccaaca tttgcaagtg gaaaaaaata tggatttcgt ggaatttatt gccgatcaaa
     5461 tgctccattt cccgttagaa cacgttatcg atcagcctta tctgaccgaa acaatggata
     5521 acgaggcaat taaagcaaaa ttggcggcaa tgaatattga taatgcccgc attatgttag
     5581 tcagcgatac tgccaaaacc gacaagaaaa ccccttattt tgaagcaggt tattcggtgg
     5641 caaaaatcac gcaagaacaa aagcaaaaat ggctggattt cagtaaaaat ccacagctca
     5701 atttgcctga attgaacccg tatttcacta ccgattttac cttaaacaag gtcgaaaccg
     5761 gcttaactaa accgaaattg attaacgacc aagcggggaa tttaatctat acaatgccga
     5821 gcgtgtattt taccaatgaa ccgaaggcta aaatcggcgt tggctttaat attcgcccga
     5881 gaaaagatga cttaaagagc ctgaccgcag cgtctatttt gggttatatg aacaatttag
     5941 cccaaaccaa gttagatttt cagtcttcgg tggcgggtat gaatttaagt ttagctccgg
     6001 cggcaaacgg tttagcctta agtgcagagg gttataccca aaatctggct aaattaatgc
     6061 tagacagcgt aaaacagttc agccgctttg agtttaacga agacgtgttg gcacaggcta
     6121 aacaacgttt gcaccaagag ctggatcgta acgaaaaaga aaacagcctt aatcaagcta
     6181 atgcagcatt aagccgtttt gcctcttacc cttattttga tgtgccgaaa cagcgtgaga
     6241 tgattgatag cattaccctt gcggatattg agcaactacg ccagcgaatt ttgcagcaga
     6301 gcagcggctt taagttgtta tcggtgggga atttgtcggc tgagcaggtt tctgctctgg
     6361 cagaggattt acaagcggtc ataaaaaacc aaaaatctgc aaatgctacc ggacagtatg
     6421 tggatgtgag taccagtcag cgtaagatta atgtgattaa aagcgtgccg aatgaagata
     6481 atgcgttgct aatggcattt atgccgaacg gctataacga gctggaaagc cttactcgag
     6541 ccaaattgct cagaagcatt atttcccgtt ggtattttga tgatttgcgt actgataagc
     6601 aactaggcta tgtggtttat gcgacagata atatcatcgg gaaaaccgcc ggtatccagt
     6661 ttatggtaca aagcccgaat accacaccgg cagggatttt agagcataac gaacgtttct
     6721 ttacacaaag tttcgaacgt ttaaaaaatc tatctgatga ggaatttgga aaatatcgtg
     6781 atagcctagt ggaaaaactg caatataaac cggagtcttt agcggaagag ttttctgagt
     6841 tcggttcaga ctttagcaga aataacccga aatttgaccg cttgcaacag gtgatcgaat
     6901 taaccaaagc actcaccaaa gcagatattg tggcatttta ccaaaaagct gtgattgaaa
     6961 agcaaggctt cgtgtttgtc agccaagctg tcggcaccaa aaccaaagct gaagacgttg
     7021 cgaaatttga cggttttgaa cagatcgaaa gcattgaaaa gctacaacga gagtttgaga
     7081 ttaaggatta ttagagagtt attagagaga gttaggggcg aaaaattttc gcccctcatt
     7141 ttttaatcca caattttcac cggatataag taagtatatc cgaacggact ttgtttgtag
     7201 ccttcaacac gtttgctggt tggggcaaag ttaattgagt gagccacgtt aatccacgga
     7261 gcttgctctc ttaagataac ctgtgcctgc tcgtataact tagtacgttc tgctttatca
     7321 gatgagccta atgctttttc taataacgca tctaactcag ggttagtaaa gcgagcatag
     7381 ttactgttgc cgatatttgg cgtgccgaat agtggcgata agaagttatc cggatcgccg
     7441 ttatcgcccg accaaccgta agttccggcg gttaattcac cggctttggt acgcttgatg
     7501 taatcacccc attcataggt gactaatttt gcttttacgc cgattttttc ccagtcggct
     7561 tgaataattt cagacatacg gcgtgggttc gggttagaag cacgcaccac aggctgcacc
     7621 cataattcgg tttcaaaacc gttcgggaag cctgcttcag ctaatagttg cttcgctttt
     7681 tccacgttat attctgaatc cgctaagctg tcgttatagc cccaaatggt tggcggaagt
     7741 gggtttttcg ccgcaaaacc gttaccttgg taaactacat caataatcgc ttttttatcc
     7801 actgctaagt ttaacgcttg gcgaactttc acgttatcaa acggagcttt ttcggtattg
     7861 aatgccacat aagcaatgtt caaacccggt tgagaaagta aattgatttt cggatcattt
     7921 ttcattttct caatgtcggt tgcatttggg aagtccatta aatcacattg accggattgt
     7981 aatttcgcat aacgggttgt tgcatccggc acgatctcaa aaatcaaacg gtcaatgtca
     8041 ggcttacctt tccaatactc tttgtttgct acataacgac tggcttggtc tagcacataa
     8101 ccgctaaaca caaacggacc tgtgccgatt ggcgtggtat ctaccgcttc aggtatgccg
     8161 gctttcatca ttttatccgc atattccgcc gaataaatgg aggtgaaatc cataccaagg
     8221 ctggataaga atgacgcatc acgtttggtt aaggtaatac gaacggtgct gtcgtccact
     8281 ttttccaccg atttcaataa tgtcgggaat ttcattgcgt tgaaatacgg ataagtgccg
     8341 ttagagacgg tgtgatacgg atgattttta tctaactgac ggttaaatga aaatactaca
     8401 tcgtccgcat tcaattcacg gcttggagtg aagtctttgt ttgaatggaa tttcacgcct
     8461 ttgcgtaatt taaaggtgta agttaagccg tcttcgctga tttcccagct ttctgccaat
     8521 gccggttcaa tatcggttgt acccggcaca aattccacca agcggttgta aatttgttgc
     8581 gagctggcgt tataagataa accgtccatc attaaaatcg ggctaaaacc ggttggcgaa
     8641 cggctaacgc agtttacaaa ggttttctcg gtttgcggtt ttgctgctgc cgcagtaggt
     8701 ttattttcgt tgcttttatc atcgcaagcc gctagagcta ataccgctaa aacgcttgca
     8761 ctaattttgg ttaacgttgg aaatttcata ttattctccg cttaatctta ggattaactt
     8821 acgaagatta ccttttccac aatgaggagt aaagaacaaa aagcattatt tttgcaaatc
     8881 aatccataga attagatacc gtcaacgtca ttgccacccg tgatccaagt aaatttgccg
     8941 atacgccaca aaaacaaact aaagatgcac ttttggtaaa acaagcgacg agtgtggcgg
     9001 cggcattaaa agcgttgccg aatgtggatg tgcaaggagg ggcccgtgcg attgtgcaga
     9061 agccgtctat tcgtgggttg agcgataatc gtattgtgca ggtgattgac ggagtgcgtc
     9121 agaattttga tttggctcac cgtggttctt attttgtgcc gatgtcattg attcaagaaa
     9181 ttgaagtaat caaaggtcca agcagctcgt tgtgggggag cggtgcctta ggtggggtgg
     9241 tggcaatgcg cacaccgaat gcgttggatt tattgaaaaa taatgacaaa ttcggggcaa
     9301 aaatccgtca aggttatcaa acggcgaata atctttccga aaccgaagcc tcggtgtttg
     9361 cagcaaatga tcggtttgat gccctgctga gtggtttcta caataatgct gacaatttgc
     9421 gtagcggtga aggcaaggaa ctgaataaca cgggctataa gcaagccggc ggtttagtaa
     9481 aattcggctg gcaaattaac gatactcatc gtttggaatt atcccatcgt catagccaat
     9541 ttaaacaaac tgcaccgggt aataacgagg tagaaaatca atttaccgat aatgatgtta
     9601 gtgcacaaat tagtgcttgg catgcggcta atcctggaaa tccaagtaat ccagtatatc
     9661 ttgcgaaaat gttagccttt tacggtcaat tacattcaag tcttggtagt gtgagttatt
     9721 taagtgatca aaaaattacc gataaaagca cctcacttaa ctactatttc aacccaagca
     9781 atccttattt gagcacacaa gtgacattat atagcaatag taccactgaa aacgaacatc
     9841 gaaaaataag tggtgtggaa gatcaaacta aactaagcac tcgtggtgtg aatatccgta
     9901 atcattccga attgtcttgg ttctccttgg tgtatggcgt ggattatatg ttggataaag
     9961 tagccactca gcgtgggaga aataatacgg acgcacaata ccgtgctaat ccttatgatg
    10021 ctaaatctaa aactacaggt gcttatttaa ttgcacatat tccgctgttt gatgaaaaag
    10081 tggtcttttc tccgagcgtg cgttacgacc gtttcgatac ttcaagtgaa acggtgaaat
    10141 ataaagacag ccattggtct cctgctgcaa aacttacttg gaaagcgaca aattggttgg
    10201 atttaaccgc gaaatataac gaagctttca gagccccttc tatgcaagaa cgatttgtga
    10261 gcgggtctca ttttggtacc acagtgagag gattacctat taataatatt ttcttaacta
    10321 accctaattt acgcccggaa acggcaaaaa ataaggaagt aaccttcaat gtacattttg
    10381 ataatgtcat ctcgcaagga gataaattta actttgaagc gacttatttc cgtaatgatg
    10441 tgaaggattt gattaatctt caagtattca aagcaaatcc tacaagccca atggaattta
    10501 ttcccactcg ttcccaatat caaaatattg cgaatgcacg tttgagtggt attgaattac
    10561 aaactcgtta tcaaactgaa cgtttggcag tttttgctaa ctacggtagt acaaaaggta
    10621 aagataaaga cagcggggaa gccttgtcga acattgctgc aagcaaaatc ggcttcgggg
    10681 tcaattatgc cgtggtgcaa gacaaattca cggtgggggc aaacgtaacc cgttatcaag
    10741 cacaacatcg tgtgccgaaa aaccacggcg tgacttacca aggctatacg ctgaccgatc
    10801 tacacgccac ttacgcccca ttaaaaggcg aatggaaaaa cctgcgttta gacgtggcgg
    10861 ttgaaaacct attcgataaa aaataccaac cggcattcag cttaatggaa ggcagcggtc
    10921 gtaatgtgaa actcagtgcg gcttacagct tctaatgtct ttaacggaag acggcacaag
    10981 cggtcgtttt ccggttattt tttgcaatat taaaagggag ttactatgaa attttatccg
    11041 tcgctgatcg caagtgcggt cagttttgcc gttgttttga gtggacaagc ggcagtgaat
    11101 gtgccggatg ccggctcgtt acagcgtgaa ttagaccaac gtcaagctca acaaaaagtc
    11161 aaaccgagtg gcgaatggtt taatcaagcg gcaaaagcac cttataccgc aacggacggt
    11221 caagaactga catttccatt aactcaggta caagtttttg atcgaaccaa ccaagaaatc
    11281 tctaccccgg aattagcccc gattttggca aactatgtgg gtaaagcggt ttcgctgacc
    11341 gatttaagca acttggcaaa tgagatcacc gagttttatc gtagccacaa ttatctggtg
    11401 gcaaaagcca ttttaccgcc acaggaaatt gaacaaggta aggtgaaaat cctgttgttt
    11461 aaaggcaatg tcggtgaagt gcggttacaa aatcagagtg ctttaagcga taaatttgtt
    11521 gcacgccttg ccaacaccac agtgaatggt tcggaattta tcctaaaaga cgaattggaa
    11581 aaatttgccc tcacgatgaa tgatgttccc ggggtgaata ccggcttgga gctttctgcc
    11641 ggtaagcaag caggcgaggc gaatttgctg attaagctcc aaaatgccga gcgtttctca
    11701 ggctatgtat cggcagataa ccaaggcaat aaaaataccg gacgttaccg tttagccaca
    11761 gggataaaag ccaataatct gataggttgg ggcgatgagt tgaaagtgga tttgatgagt
    11821 tccaacaacg ctaatttaaa aaatgcgcgt ttggattatt cgagcttgat tgacggctac
    11881 gctacccgtt tgggcttaac ggcgaattat ctcgactacg aattaggcgg taactttaaa
    11941 gccctgcaat cccaagggca tactcacaat cttggggctt atgtgttgca cccgacaatc
    12001 cgcttgccgg attttcggtt aaacaccaaa gtcagcttta atcatcaacg tttaaccgac
    12061 aaacaacaag cggtcaatgt ggcacaaaaa cgccaagtaa acagcttaac ggtgggcatt
    12121 aacgggtcgt ggaattcgct taaagacggc acaagctatt tctctctgtc tgccttgttc
    12181 ggcaatttag ctaaccacac caacgagcaa gcgcattatg tggcaacaga ttttcagccc
    12241 aaatcccgtt ttacggtcta tcaatacagc ctgtctcacg aacaagcgct gccaaaatcc
    12301 tttgccttca accttggcgt gaacgggcag tttgcggata aaaccctcga cagctcacaa
    12361 aaaatgttac tgggcggttt atacggcgtg cgtggtcatc aagccggtgt cgcttcggtg
    12421 gatgaggggc atttagtgca aaccgaactc aagcattatt taccgctctt ttccaaaagc
    12481 ctgctgacca gctcggtctt ctatgattat ggttggggaa aatactataa acacagcgga
    12541 tttttggcgc gtggtgtaaa caatagcgtg aaattacaga gtatcggagc agggctttcg
    12601 ctctctgaag caggcagtta tgccattaac gccagtgttg ccaaaccgct gggtaaaaaa
    12661 atcgagaatg cagataaaca ccaattctgg ttctccgcca tcaaaacctt ctaaggagac
    12721 aaactatgtt taaacgtaat gcaatttctc tctgcatttt gaccgcttgc agcggtttag
    12781 cctatgccaa tacagcagat ttgccgcaag gtgaaagggt gcgtgtcggg acggcaacga
    12841 ttgagcgcac aaccgataaa atgaccgtga atcaatccag caataaagta caaattgatt
    12901 ggaacagctt tgatattggt aagaataaag aagtggaatt caaacagccg acagagatgg
    12961 cggtggcata taaccgtgtt accggcggaa acgccagtca aattcaaggc aagctgaccg
    13021 caaacggcaa agtgtattta gccaacccga acggtgtact catcaccaaa gatgcggaag
    13081 tgaatgtggg cggtttgtta gtgaccacaa aagatttaga aaaaatcagc gaaaacggca
    13141 caaaagataa attcagtcgc aaattagcga aagaaggcaa aattcttaac caaggtaaaa
    13201 ttacggccaa aggcgagcgg gcttttgtgg tattggtggg cgacgatgtg gctaatgaag
    13261 gggaaattaa cgccaaaaat tattaccaca aagaaacgaa aaaagtcacc gaatgttatg
    13321 acgattcttg gagcttggta aaacaatgct acgattttga taaagaaatc gtgaaaagta
    13381 ccagtggaga agtgcattta tcctccggag aaaatgtcac ctttacttta agcgaccgct
    13441 atattgatgt ggcgttagac gataatacgg tcaatagcat tatcaaaaat gacggggcaa
    13501 tcatcgccaa tggtgacatt accctcactg ccaaagggcg aaatcaagcc ttagacagct
    13561 taattatcaa taacggcgta ttgcaagcca ataaggtgca aaataaaaac ggtacgatca
    13621 ttttatctgc cggtgaaacc caattacacg aaaaaagcca aattaaaggc gagaaagtga
    13681 gctttgccga agcttcttat tacggtccga cagaagacat taaagtggtt tccaaaaccg
    13741 gctcaaaagt gaccgcacct gtgatcgatt tcaaaggtaa aaccgtgaat attcaagggg
    13801 aatttgggcg tgaagacagc accgatctct ataacgatga actacaaatc ctcaaaacca
    13861 cggtgaatat tgaagtcccg aatacggaag atattcgcat tgcagatacc gacaacggag
    13921 gtagcggttc ctttatacaa gcgggtgctt tagcctcatt acttgcaaat aacggacggg
    13981 ttaatgtaca gggcaaaggt tttgatgtct caggcaagtt gaatgtgaat gcctttaaac
    14041 aaacggattc cgtgctgaaa tttatcaatc aggcgggcat caatatccac aatgccgata
    14101 ttcacgcaaa cgggcgttta ttctttgtga caaacttgcc gaatgacacc gatttccaat
    14161 cgaatatccg cattaccgac agcaaaatca acttaggcaa cggctcaatg ggctttggtc
    14221 gcagtagcaa acgttgggaa atgcacgatg tggttcgacg tgccgatacg gaactgcgta
    14281 aaaaattcaa tctggatatg aaaaacgtgg aattaaacca agtggatgat tttgtggtag
    14341 cgggcggttt ccaacaagtt aatttggata acgtgaaagc ccgtggcaaa accaacttct
    14401 atctggattc cggcaactcc cgcatgtttg tcggtgagca gatttatgaa tatggcgtaa
    14461 ccgatattga aaaacgcacc caattggcga atttagacca gcgtagaaaa cgttggaatt
    14521 cggataacta tgatgagacc gatctcaact gggaatacaa ccaacgcttt gacggctttg
    14581 cagcaaaaca caatcaccgc gcgccgattg ccgatacgga aatcaatatt gccaatagtg
    14641 atatcagctt agataacggt tttgtgcatt taatggcaga aaaaatcaat ctggacgaca
    14701 gcaaaatcaa tatcaccttc aaccaagaca acagcttgga tgaaagtacc caaatcaacc
    14761 gcttaggact aaacggcaaa gtgtcgatga aaaacagcca tattaacgta gtgggcgatg
    14821 aaaaagacgg tatctcaccg gctcgccatt atgccacgat gttcttagtg ggggagctgc
    14881 ttggtgaaaa gagttctatt ttcctcaaat cccaccaagg tgcagtattg agaaccgaca
    14941 gcaatgttac aattgccggt aaaaacagca aagacgacct caaaattacc gccattacca
    15001 ccggtaaaaa aatgggcaat gaaatcatcg gaccggacgg cttgccaacc tcggaagata
    15061 acgatgccaa cgccagcaac accgcctttg ccatcggcta tgaacctaac gctacggcta
    15121 tcgtcgaaaa tgcaagcatt accgcattag caccaaacgg cggcttggca tacaccggca
    15181 cgtctaaaac ccaaattgac gcgaaggata atgctacctt taccttcttt gaaaaacctc
    15241 gagccggcta tgacaaattg cttggcgaca tcaaaggtaa ccccgataaa ttaaccccac
    15301 gcgatttcgc ccgtttatac gacaacatta aaggcatcaa agccagcagc ctatccgaac
    15361 aacagcttgg cctagcagac accgcgaaga aaaccagcga acacacctta gcaaacagcc
    15421 tagacgtaga aaatttggtt tcagtgacag tgtgtgatga gcagaataag tgtgaggagc
    15481 gtatgttagg taacaaaaat accaatgcta aagttattgt cggagatatc aaatttgagt
    15541 agcgttgaag aaagtggtag aagctcagac ttgatctgat aaagcactat aaaaagtgag
    15601 agtttcccgt ttagaatatg agtgtcaaaa ttcaatctaa acaaaaagga aactctcatg
    15661 ttttattact tacaatcccc tcattaaaca caagaccggt ttattaaatt tagcagaaga
    15721 accgggcaat atctctcaag cctgcaatgt ggtgggtatg agcctagata cattctattg
    15781 ctatcaacaa gcggttattt ttggcaacta atttgcaaaa aaacaataaa atccgaccgc
    15841 ttgtagaggg ttaatccgcc cttagtgaaa tttcaccgat gccgaaatag cggaggttgt
    15901 cgccctgttt tagaatgagt tcgccctgct cgttaatgcc ttgcgaaatg ccgtggattt
    15961 cttcggcttc ggtaatgagc ttaaccgctt tatggcggaa aaggtcgaaa ctttgccagc
    16021 gttcggcata atgagcgaag ccgacaagcg gataaatttt gagatttttt tgcaattcat
    16081 aggctaaacg gcaaaccaat tcgttgcggt tgaaatgata ttgcgataaa tctgcccacg
    16141 cttgcgtcac aatattttca tccacttttg ccattcctag gttcagccca atgccgataa
    16201 ccacatctaa accattgcga ttggcttggg tttccaacaa aatgcccccc atttttttgc
    16261 cttggtaata aatgtcattc ggccatttaa tttgaatatc ttttacattt tgaacagtaa
    16321 ggctttccgc aatgatcaag gctaccacta aacttaaggg cggtaaatct gccgcctgct
    16381 ccatcgggta atgccataaa atcgagaaat agagattttc actctcgggc gaataccaag
    16441 ttcgacctcg tctgccacgt ccggcagttt gtttttcagc gaggcaaacc gtgccgtttt
    16501 ccaaacgttg gtgatgagtg agcaaatatt cattggttga atcaatttca tcgaacacaa
    16561 cggcttgccc gcaaattaaa gcattttgga tttgagcttg gttaagtttc attatttccc
    16621 cacttagcga gtgatttttt cgctatcgac ctcaccgttt ttaccgataa aacgcacttc
    16681 aggctgaatt tctaccccaa atttttcttt cactctctgg cgaacggttt tggctagagc
    16741 caagacatct tgccctgttg cattttcttt attaatcagc actaaggctt gctgggtatg
    16801 taccgccgct ccgccaattt gtaagtcttt cagcccggtt tggtcaatta accaacctgc
    16861 ggctaatttt accgttccat cagcttgagg gtagtgagga atggctggga atttggcttg
    16921 tattggtgca aattgttcgt ttgaaatcac cggattttta aaaaagctgc cggcattgcc
    16981 aaattcgtca gggtttggca atttggagga gcgaaccgca cagacttcat caaaaatctg
    17041 tattggcgta acggtttccg gattgagttg ggctaatgat ccgtaactta gcaccggttt
    17101 ccacgctttg gctaacttta agcctaccga gataatcgca aattcatcac ggtattggtg
    17161 tttaaacaca ctttcacgat agccaaattc gcactcggat ttggatagct taaagagttc
    17221 tccggaacgt aaatttaaca cttccacgaa atcacatacc tgttcaaatt caaccccata
    17281 agctcctata ttttgaatgg gagcagagct ggcgacaccc ggaattaacg ccagattttc
    17341 aatgccggca atattgtgtg ccaacgtcca tttaaccaat tcgtgccagt tttccccacc
    17401 ttgaacgtgc aaatagtgga aatgttcgtc ttcgtggtgc gtaatccctt tgagtttatt
    17461 tactaacacc acaccgtcaa aatcctctaa aaacaaaacg ttagagcctt gcccgagaat
    17521 caagattggc agttgagcgt taaaggcttt ttgccattcg ctcaatagct gttcgactgt
    17581 ggtaaattca ataatttggg tcgcttttgc aggcaaatgg aaagtgtgaa aaggggttaa
    17641 gctatgtttc atcatcaaat tagttagtta agaagtggaa ataacaagcg gtgatatttt
    17701 tacaaaattt tgcaattaag attttgggca ggcacaggat ctgcccctac attcagaatt
    17761 accttgcccc atataccaca atggttttgc cgtgagcaga aattaagcct tcgtcttcca
    17821 acatttttat aatgcgtcca acggtttcac gggaacaacc gaccatttgc ccgatttctt
    17881 ggcgggtaat tttgatctgc ataccttccg ggtgagtcat tgcatccggc attttagcta
    17941 agttgagcaa ggtttgagca atgcgaccgg caacgtctaa aaaggcaaga ttaccgactt
    18001 ggcgtgaagt ttgacgtaaa cggcgagcca tttgtgccga taaatacatt aaaatatcgg
    18061 ggtttaaatg gactagttgt ttgaattttt tataggaaat ttccgcaatt tcacaaggac
    18121 ctttagtgcg gacgtaagcg gtacgttgtt ggactttttc ttcaaataaa cttaattcac
    18181 cgacaaactc acctgtgcct aagttagtta agagcatctc tttggtttca tcatctttga
    18241 tgtaaaccga cactgagcca ttcacgatgt agaaaagtga ttctgcatct tcaccggcgt
    18301 gaatgagtgt atatttcgcc ggataacgat ggatatgaca atgggttaaa aaccactcca
    18361 ccgcagggtc gtgaatagag ggcggaggag ttacattttc cagaggagct gttgaaagtg
    18421 tcatatcttg catagtattt cctataactc ttatactagg ttaaattttt agaattttaa
    18481 cacgaaatta aaggttagcc taaaaaagat tttttgtctt taatatcaag gctttcgtgt
    18541 aattccgacc aaacaatcac cactttatct gccttaagtt gtgtgagtaa tcgttctctt
    18601 ttttctgcca gagaaagttc cctttccccg tagtctgtgc cttctcgtaa aatgaaggaa
    18661 tctaaaatat tatgtaaggt tgattcttcg agttcttgcc aaggtataat cataattaat
    18721 caaataaagg cttaataaat gcccactgtt tttcaaaatg ttggtgttgg ttatagctga
    18781 aattagaacg aaccaagcgt aaaaattgcc cttcgcagaa attcactaaa taaccggcta
    18841 aggctctttc gtcttcaaag ctcttgcgtt cacgcagttt actaagttgc aaaatattgg
    18901 caaattgtaa ctccaagtta tcaaagaatt ttgccactcg agctttgagc aactcctctt
    18961 caaacatcaa ggcgtgtccg gtcaggatgc gggtaacgcc cgggtttttg cgagcaaatt
    19021 ctaaaatcac atataaaatt gctcgcaccg aattggcact gctgtcttgg cgtttattgg
    19081 cgtgaatata gctggtgagg gtctgctcga ttttctcgat taacgcttca aacatcttgg
    19141 ttttacttgg gaaatagcga tacaacgccc cctccgacac ccccaccgca gcggctaaac
    19201 gctcggtagt gatacgctgc attccctctt cagaatttaa caagctgatt aacacttcca
    19261 acacttgttg gcggcgttcc accactgatt ttttcggcat tttaatttta ggttctgtca
    19321 ttgccaatcc tattattgct tacctgaatg cccaaaaccg ccttcgccac ggtcggtctg
    19381 ctcaaactct tgcacaatgt taaaacttgc ctgaaccacc ggcacaaaga ctaactgagc
    19441 aatacggtcg cccacgttca cggtaaaatc agcttggcta cggttccaaa gcgacacttt
    19501 cagctcgcct tggtaatcgc tatcgatcaa gccgactaag ttgcctagca cgatcccgtt
    19561 tttatgccct aaacctgatc ttggtaagat caccgctgcc aaattcggat cggcgatata
    19621 aattgaaatc cccgttggga tcaacaccgt ttcacccgct tttaccgtca gcggctcgtt
    19681 gagcatcgcc cgtagatcca agcctgccga gccttcggtc gcatacgcag gtaatggaaa
    19741 ttcattgccg atacggctat ctaaaatttt taaatcaatt tgtttcattc tttttccttt
    19801 ttgtaaattt ttaaaactat attattcagt tataaaaggt tttaattgta tcgttccaag
    19861 tggaagttca gtcaatattt cccagcttgt gttgtggtaa aatcgaaata aacttgcaac
    19921 gttttcaacg tagcttgaat taaatttacc ttctaatggc tttattcctc cagtaaaatg
    19981 aattatatgt ggaatataat ttggcgaaat tttttgctgg gcaatatcat ctaataaatg
    20041 ttctgtctga taattatatt ttcgatctaa ctcaatccaa ttatattgaa agcagtaatt
    20101 aagaatatct tgatccccaa atggtaaatt ttctttaaat ctctcagtaa gctgtataaa
    20161 tggttgctta ctaaaatgct ttgcatttag ataaaataca ccagcattga aatagttttt
    20221 gtaaatatag ggatgatttt ttagtttgtt tacataagga tcagcaattg cagcaatact
    20281 tccaaaagaa aaatctaggt ttgtaaatgg atccgtaata tttccattaa ccacaagatc
    20341 gcaatctaaa taaatccaat atgggctatc gctgtgttca aatagttctt caatataata
    20401 tcgtaggtaa gttgaattag taatatagcc gttggagtta aaatttgcta aattatttga
    20461 atctaaatag ccaagtctta atgtggaata tctattttct aaataggggc gtaatgtttc
    20521 tatccagtgg tgagaaatat cgccagtact caatataaaa atagataaat gattatgatg
    20581 agctaatagt gattttaagg caatctctaa atatggcagg tagtttttat ctgctgaaaa
    20641 tacaatatta tactttttca ttttgatctt tgaccatatt tttctcttct tgcacaattc
    20701 gttcaccgat tttccaatag gcttcgacca ttgccgaatt cacggcttga tacgcctttt
    20761 ggcgagcaga taaaagaata tgtttaatgt cgttgatata ctgatttgac gtaagttgca
    20821 taattttcat cctattaccc ttaagatttc acaaggtagc cagccaattt cgttttctct
    20881 tttgacaatt gcccattggt aatgtagttc aaggaattct actctctcgc cttgtgctgc
    20941 aacaagttcc gttgggttat aatcgcatat caatttatct tcgctaataa aatggcttgg
    21001 cacaaaggtt ttccaaccgt caatttcaca ggcaaaccag tttgggtagt ttacacattc
    21061 actccctaat cgaacggcag taccagctga gaatgtagga aatttccctt cgccttgatg
    21121 aaaatggcta accagtaatt tcattatttt tctcgataat gttttacaat ttcctgtacc
    21181 aaactttctg ccaatttgct tttatccgcc agaggaagcg ttttttcacc atttttccag
    21241 aacaaatgca acgcattttg atcctgcccg aacacttgtc cgcctgagac atcattggca
    21301 caaatcatat ccagattttt gcgttcgagt ttcgatttag cgtactccgc cacattttgc
    21361 gtttctgcgg caaaaccaac cacaaaaggg cggttttcgg caagattggc gacgttagcg
    21421 ataatatcgg ggttttttac caattttagc gtgagttcat cattggcatc ggttttctta
    21481 attttttggt cagagactgc cgccattcgg taatcggcaa ccgctgcaca gccaataaaa
    21541 atcgcagatt tttgggcaaa tttgaccgct tgttgctcca tctcaaccgc agattccaca
    21601 ttaattcgtt ccacattttt cggcgttggt aaattcaccg gaccgctaat caacgtaacc
    21661 tttgctccac gttcggcaaa ggcattagca atcgcgtagc ccattttgcc ggagctgtgg
    21721 ttgctgatat aacgcacagg gtcaatcgcc tcacgagtcg gtccggcggt aatggttaca
    21781 tttaagccct ctaaatcttg attgttggag aaatgagcca acaccgcttg gtaaatttct
    21841 tcaggctcag acattctgcc agcccccaca tcaccacagg cttggaagcc actattcggg
    21901 ccgatgagct gaacgccacg attgactaaa acagacagat tttcttgcac cgcaatctgt
    21961 ttgtacattt gttgattcat tgccggtgca agcaaaatcg ggcttgcagt cgcaaggcag
    22021 agagtggaaa gtaaatcgtt gcccattccc atacgcaggc gagcaataaa atcggcactt
    22081 gccggggcga taacgattaa atccgcccat tttgccagct caatatgccc catcgccagt
    22141 tcggcttgtg ggtcgagtag tgaagtggaa accgcattgc cggaaatcgc ttgtaaggtc
    22201 aaaggcgtta caaaggcttc tgctgctggg gttagcacta cacgcacttc cgcatttgcc
    22261 ttttttaagt ggcggataaa ttcaatggtt ttgtaggctg caatcccacc ggaaatgccg
    22321 actaaaattt ttttgttttg taacatcttt actatcctta aagcgtggat ttattttgca
    22381 tattttagcg gaataaggag ttgctcacaa cttcactatt tttgcgatct tgctcgaaaa
    22441 attgaataaa tccctttgtc tgcaaaggtt ggctctttta tgcttaacta aattgatgga
    22501 ggaaaaaatg aacgattttt ttgatgaaga ttctcaagag ccaacaatga tgccgcgtga
    22561 gaaattatta acacaggggg cagcctcatt aaccgattcc gaattattag cgatattttt
    22621 acggactggt acgaaagctg tgcctgtgct ggcattggca gagagtgtgt tgatggcatt
    22681 tggctcgtta cgccaattac tgaatgcaaa tattgatgat ttttgcaaaa tttacggttt
    22741 aggcaaaacc aaatacattc agttacaagc ctctaaagag atgaccaaac gctatctggc
    22801 tcaacaaatg gaatttagcg agatgattca agccccttat atggcgatta tgtatttcca
    22861 aaccgagttg gaggaagaag aacgggaagt ttttatggtg ctgtttttgg acaaccaaaa
    22921 ccgattgatt tataaagaaa aaatgttctt cggcaccatt aatcaaactg ctgttcaccc
    22981 ccgagaaatt attaaaagag cgttaaaata taatgccgcg gcgattattg tggctcataa
    23041 tcacccctca ggttcttgtc tgccgagtga gtcggacaga agtttaacta aaaagatcga
    23101 aatggcgtgc gaattggttg atattcgctt tgtggatcat attattgtcg gcaaagggga
    23161 ctatttttcg ttcgaggaag agaaattaga gatgaaggag cattcatttt tgcaaatttc
    23221 tgatagaaaa tgaccgcttg ctttatgtaa cctttaacat ttctcctgaa acagtaaaag
    23281 atacgcatat aaattctact tgaatataac aaatgaaatc ggtataatcg gcagtcttta
    23341 ttacatagac tgtggtcggg ttaatgcctg acgaggcaat caaaatcgga ggggttggtt
    23401 gagcaacgcc ttttgtgaga tcgcccgaac catttttaag cttaaaatta ttggagaaat
    23461 tcaaatgtca agagtttgcc aagtaaccgg caagcgtcca gcagttggta acaaccgctc
    23521 acacgcaatg aatgcgacta aacgtcgttt cttaccaaac cttcacactc accgtttctg
    23581 ggttgagagc gaaaaccgtt tcgtaacctt acgtttaact gcgaaaggta tgcgtattat
    23641 tgataaaaaa ggcattgatg cagtattagc tgaaatccgt gctcgtggcg aaaaaatcta
    23701 aggagctaaa aaatggcagc taaaggcgct cgtgagaaaa tccgtttagt ttctacagca
    23761 gaaactggtc acttctacac aacagataaa aacaaacgta atatgcctga aaaaatggaa
    23821 atcaaaaaat ttgatccagt tgtgcgtaaa cacgttatct acaaagaagc aaaaattaaa
    23881 taattttgtt ttaagattta aaacccagcg aatgctgggt ttttcatata caaaaaatta
    23941 gtgaaaaaag accgcttgta tgattaaact aatgatagct taaaatcatt acttgacaag
    24001 gcttggctat attcaatagg tagtccttta tctgtgataa tttgtgtaaa gttatcgagt
    24061 tgagttgcac gaaataaaga gtattttcca tatttgctgc tatcggcaac cagtactttt
    24121 tgtttggcgt tttgttggag cattcttttt aaattagctt tctcttctgt aggtgctgta
    24181 actccttttt ctaagctcca agaattacag ctcacaaaag caatatcagg attaatattt
    24241 tctaataaag ttaaactatg attaccaata caagattgac tactattatc tactcgtccc
    24301 cctgtaataa ttaattctat ttgcttatat tcagagagta ataaagcaat atgtagatca
    24361 gttgtaatca ctcgaagtgg catatgagcg atttttttcg caatgcatag cgttgtagtg
    24421 ccagcatcta ataaaataga atttcccggt gaaataagcg aaacggcata ttcagctatg
    24481 cgttcttttt cgacaatttg cttaaattgc ttctcatttg ttgttggttg aaacggtata
    24541 aattggttta agctgacccc tccgtgtgtg cgaatcacga cgccttcttc atctaatttt
    24601 attaaatcac ggcggatagt tgcaggagaa gcctcagtca cttttaccag ttgctctacg
    24661 gtagcaatat tgtggttttt taggaatagt aaaatttgtt ctagacggtt tttagacata
    24721 taaactctct aatttttaac tgcttttact ataagtaatt ttttaaaaat aagatagtta
    24781 aaat
//
LOCUS       DANLRW010000029        24706 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.029, whole genome shotgun sequence.
ACCESSION   DANLRW010000029 DANLRW010000000
VERSION     DANLRW010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 24706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24706
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.029"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(161..2509)
                     /locus_tag="PXA71_000945"
     CDS             complement(161..2509)
                     /locus_tag="PXA71_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5105073.1"
                     /translation="MLISAQFSPLVWAENNDVAVLDEVSVVGSTPSISQGSEVTLLKV
                     SDKIIAGKEFKKRSATLGNALASELGVHSNPFGGGASKPIIRGQEGARIRILQNGSDV
                     IDMSNLSPDHAVVADSLLADQVEILRGSSTLLYASSSPVGIVNVVDKRIPTAIPEKGY
                     EVELNSRFDTAAKEKVGALGATFGIGNHIAVRVEGLSRHSDNYRVPGINLGERLNYVP
                     DTYNKSKVGTLGLSFVGERGYIGASYSKRRDNYGLPGHNHKFDFCTGHIYGNKRDKYA
                     YTYLYPHLIGEENIGSNPHFHCGTNHAEDGTHSHDNPFGHAHDHTHKGPWVDLESKRI
                     DVKAELRQPFKGVDKIKASYADADYYHDEKDAGVLATRYHKQLKKDQDYGKPVNIFKN
                     RGKNTRLEVYHAPLGGLTGVWGVQYQTQKSSMNAPKDREVKFPLVENTNKQFSLFGVE
                     QYMWDSVAVELAGRMEKQKIEIEYDRNEIKRLQEHYRISGGKQVEPDLSPYDETAYAY
                     SGTLNWFFHPDYQLSFTASHNERLPTPMELYYHGQHIATNSFEYGNKDLKKEQSNNVE
                     LGLGYQAERIGYKVSVYYNHFKNYIYNENLFRENQLFMRRYNQAKARFYGVEAEASYR
                     FNDQYQATIFGDMVRGWLTNLPPLKINSDYSVFKDYLPENVEKGKDYLLYRADQNTPR
                     TPPMRLGFRFNAEFTPNWSGDLELIRTFTQRRTSQLEYITEGNTMLNVGLSYSNKWKE
                     LDYKISLNGTNLLNQPVYIHTSYHQFVPQMGRNFMLGMEMKF"
     gene            2694..4151
                     /locus_tag="PXA71_000946"
     CDS             2694..4151
                     /locus_tag="PXA71_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105074.1"
                     /translation="MRSTFKLTLAALAVSIVLSGCKSSQGPSIVADSPPPKEITATDG
                     NDKEKTDNKEKKSAQPNKSDPQPDKPANAKDPVKPDAETNKPSKKDKEYTPPATEKID
                     NSSVQPDKMVPNPIENKENDSNKPNPKESDSDNNDKVTEGNKPNAPTETVNKDKEAEK
                     SKKENKEDSSNNTPNINFDGAKPIDTDSKGSPYRVINLNPRKSVVNASAMQKVDFDSF
                     TDESVENSPFVSSDTEKEYNNTLVFGLGAGDKDSYFKNLNQKGDKHLGIHSGVYEDAN
                     LEGNTKKINYLYVNQPYSSYGALFTDQKDSHLFNVRLTAGRGDVKENGDSYAEYGVFT
                     QSGKEAKWNDNLIGDATYKGQAIARVIRQVNGEQVAGIPQFDGDVTLNLHLSKEWNES
                     KLNGKIDSQSVGVITLKESEIANPTALRSNIGFGEEVIVENKENLVGDYAVDFTGPQL
                     EEAVGVVELENEAETFSENEVIKYNAVFGVSKAAK"
     gene            4215..5627
                     /locus_tag="PXA71_000947"
     CDS             4215..5627
                     /locus_tag="PXA71_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5105075.1"
                     /translation="MKKIALLALFPMMLFARDPNTTQAYIEHTAQPTTTPQRVKIEKS
                     VPIFNETELRANQLLTEKLLIQAIYSRRLANMEKLTAIYRDFTHIDPVLLRYAQGKIA
                     LLKGDYAQAIQHFQTILAKQPKLNTVRIELAIALLYDQQLNQAQAQFEKAKSAEHLPP
                     KVHALIEQYQQHLAKKQEWKFSFSANYVRDGNINRTSKQPNIEQTGYVKQPNLLPQTA
                     HGVHYAFGLQRDFNLFDSHYVSFDNQTQGELYWDNHDYDEITNRTLFGYAYKKSDQTT
                     RLLPFYEKRWKHHRSERWTNGIRLEHAQWFSPHWQLATALEYGKKRYFDLPIYNGSYK
                     LASATLLWLRNPQQFFFVGTDFNQDKTQLKQYSSDTKGIRFGWQREWQALELSSRLTL
                     GYTDRRYKDTAILGGKLNLGRIRHDRVQSANLTLWKRDWHWLGLMPKLQFSYAKHRSN
                     LPSLYAYTDKNINLIIESRF"
     gene            complement(5821..13659)
                     /locus_tag="PXA71_000948"
                     /pseudo
     CDS             complement(5821..13659)
                     /locus_tag="PXA71_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484218.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
     gene            complement(13711..15486)
                     /locus_tag="PXA71_000949"
     CDS             complement(13711..15486)
                     /locus_tag="PXA71_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HDL5105076.1"
                     /translation="MKTPQNLILSTVLLSASFVAEANSSSLVQQARIDATQQQIDAAQ
                     QHRQQQYQQNQAEKFQPKADVRLETQINDTLTLSNHELPCYPIHQITLIDYSPDNSLT
                     TSQFQWAFEKAVKSFHLTLPHCFGGEGLAVLMKQIQNEIIGKGYVTTRVVTAEQDLRG
                     GKLVLTVIPGKIRNTLVVDSGKVPRFTKLHALTGFTFAEGDILNVRDIEQSLENLKRV
                     PTAEANIEILPSSSEKAEVGDSDLKISYSQAFPFRLNLGLDDAGSKSTGKLQTSATLS
                     IDNIFSANDLFYTSFTHSMKQKGDDNGRRASKNLTLYYSVPFGYWQLAFSHTHHRYHQ
                     EVFGAFDKSYLYAGESDTDKLTFSYLLYRDAKRKTSLSGSLWPRQSQNYIDGSEIEVQ
                     KRRMAGWEAGFSHKEYFPTATLELSANFKRGTAARGALSAPEEDYGEGTSRPKIITAS
                     ASLTKPFFWGKQPWQWQSSLNAQWNKTPLVPQDRFSIGGRYTIRGFDGELTLSGERGW
                     NWRNELSWQFNPNHAFYWAVDGGRVSGWATENQLGHHLMGTAIGFRGGVKGFSYDVFA
                     GRPMRKPEGFKTSDTVAGFNIGYNF"
     gene            15641..16726
                     /gene="queA"
                     /locus_tag="PXA71_000950"
     CDS             15641..16726
                     /gene="queA"
                     /locus_tag="PXA71_000950"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDL5105077.1"
                     /translation="MLVSDFHFNLPDELIARYPTAERSASRLLHLNGETGEFADQQFV
                     DLYDHINEGDLLIFNNTRVIPARLYGRKPSGGKVEALVERVLDEHRCLAHVKASKAPK
                     EGAELIFGEDKLGEGKGFTATMVARHDTLFELVFNEEQPLFELLQQAGHMPLPPYIDR
                     PDEDADQERYQTVYSKVLGAVAAPTAGLHFDNAMLEKLKAKGVDTAFVTLHVGAGTFQ
                     PVRVETIEDHKMHAEYAEVSQEVVDKILATKAKGKRVIAIGTTSVRSVESAAQAAEKD
                     GKLIAPFFSDTAIFLYPGKTFKVIDALVTNFHLPESTLIMLVSAFAGYRNTMNAYAHA
                     VETKYRFFSYGDAMFINKNPNALSDVP"
     gene            complement(16753..17291)
                     /locus_tag="PXA71_000951"
                     /pseudo
     CDS             complement(16753..17291)
                     /locus_tag="PXA71_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(17304..19586)
                     /locus_tag="PXA71_000952"
     CDS             complement(17304..19586)
                     /locus_tag="PXA71_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HDL5105078.1"
                     /translation="MTLDRFCIALILFHLPILWLPKAFLFVGIVIGTLVLILSVYLRS
                     KLTAVLGLLVCIGYIQIIQVAKNAEKTTASKTPVQFEISKILKQTDYQTAIATLNTGE
                     KIYLNWQSKQPLLLNQFYQAELALRPISARSNIGNFDRQRWYFANHINMTATVRKVET
                     LAKTDYSLRTNWLNKVKAETDALPTQGFLLALAFGERAWLKTEHWGQFQQTATAHLIA
                     ISGLHIGLAMLFGVYFAKGVQWLCLKSELTALQAVGFSLYFARIVSFITAFGYSYLAG
                     FAVPTARALLAIAFVLLCQVLRRHYTPWQYWGRIVALLILIDPLSLLSDSFWLSILAV
                     ASLILWYQYFPLSRFLNDEYRKKITKFNRLWLSLLHLQIGIWLIFSPVQLYFFEGISA
                     FALLANLIIVPLYSFLLVPLILFTLLTDNLFSTWLLADYLAQFSLWLLDPFSNAWFAL
                     SHWQQWQLLSLNLLVLVLLYCKLYRLSYKKWLSAVAVSLLFNLSFYLPKLFNQTQTEW
                     IMFDVGQGLAMAFIYQQNKAVIYDTGSSWQANDGSRNSMAKMEILPYLKRNGIEVEAI
                     FLSHDDNDHSGGVVELLQAYPKARLISSSKVTYHNINPEPCIAGTSWQFGEWQLLAIY
                     PSHIAERAKNQDSCVILAKNDRLKILLTGDSGVEQERQFAHQLGKIDFLQVGHHGSKS
                     STGETLLSITQPAFAVISAGRWNPWKLPNKQIIERLNRRHINVLNTVETGMIRVKFYP
                     SSIEIEQARGAFSPWYKQFY"
     gene            complement(19728..20942)
                     /gene="sstT"
                     /locus_tag="PXA71_000953"
     CDS             complement(19728..20942)
                     /gene="sstT"
                     /locus_tag="PXA71_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HDL5105079.1"
                     /translation="MSQSLSSKILGGNLVLRIAIGLVLGVLLAFINKEWATSVGVLGQ
                     FFVKSLRAIAPILVFVLVLAAIANKEVGSDSKLKPILVLYVLGTFFAALTAVVLSFMF
                     PTTLELTASPDGLTPPQGIGEILKTVIFNLVDNPLVALSNANFIGILAWSIGLGIAFR
                     HGSASSKAFLNDLANAVSFVVKVVIAFAPIGVFGLVAETVAINGIDAFEDYARLLVVL
                     VGAMLFVALVLNPLLVYWKIRRNPYPLTFTCLRESGVTAFFTRSSAANIPVNMNLAKR
                     LGVRDEIASVAIPLGASINMAGAAITVTVLTLAAAYTQGIQPDFATALLLSVVASICA
                     CGASGVAGGSLLLIPLACSLFNIPNDIAAQVIGVGFVIGVIQDSVETALNSSTDVLFT
                     AAVSYAEDQKSA"
     gene            21197..21559
                     /locus_tag="PXA71_000954"
     CDS             21197..21559
                     /locus_tag="PXA71_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDL5105080.1"
                     /translation="MKPTNKADFQRVINAAGYSMKGLKAAYINEAAFRQEIWCATILF
                     PLGLILGETNIEKALLVGTVLLVLVTELLNSAVESVVDRIGADFHELSGRAKDIGSAA
                     VFMAMVLLAITWILILFC"
     gene            21596..23239
                     /locus_tag="PXA71_000955"
     CDS             21596..23239
                     /locus_tag="PXA71_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HDL5105081.1"
                     /translation="MRLKKTLLSVALLSATSAMAYETGKTYRFTVLHTNDIHGHFWQS
                     DKGEYGLAAQKTLVDNIRKEVAEKGGSVLMLNAGDANTGVPESDMQNARPDIEGMNAI
                     GYDAMVLGNHEFDYPLQILSMQEKWAKFPFISANVINKKTDKPIVKPYVMLERGGLKI
                     AVIGLTTEDTAKLGNPDVTENAFFKNPIETAKNTLAEINQKEKPDVRIALTHMGYYFD
                     GKHGTNAPGDVTMARTLEKGAFDLIIGGHTHDTVCIDEKGQFKAKYTPGEECKPDFQN
                     GTWIVQAGEWGKFVGRADFEFKDGKATLVKYELIPVNLKKTIKKEDGTKEYRLYQPEI
                     KADEATYTLLKKYQDEGDKKLNIEVGRVKGLLDGKREHIRFQQTNLGRLIAQSQMERV
                     KADIGIMNSGGIRTSLEEGVITYKHILTVQPFGNMIATVDLKGQELLDTLTTIALKEV
                     DTGAYPQFAGISMVVDRTAKTISDVKIGGKPFDKEKTYKVSLPDYVAAGGDGYPLLKK
                     HPSYVNTGFIDAEMLKKFFEENKIIEADKYDPKNQIIFK"
     gene            complement(23446..24315)
                     /locus_tag="PXA71_000956"
     CDS             complement(23446..24315)
                     /locus_tag="PXA71_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDL5105082.1"
                     /translation="MSSRGKILNTISSLQNSLTKTEKKIAAAILSQPELLSQCSLSEV
                     AKQLDVGEATFIRFCRTLGFKGYTDFKLELAIELATQNQDNRVLLDTDVSESDTSKDI
                     AEKLKVSLDNVIEETINLLDFNVLEKVVEELRKAKRIFLFGVGSSGLTAEDAKHKLMR
                     IGLQTDAVTNNHFMYMQAALVKEGDLVIGISHSGYSEEIVKSLRFSRANKATTVAITH
                     NLRSPVTEEANYVLINGNRQGHMQGDSIGTKMSQLFVLDLIYTLLVKAEPENALKQKQ
                     KTLNVILEQRVKG"
     gene            complement(24325..>24706)
                     /locus_tag="PXA71_000957"
     CDS             complement(24325..>24706)
                     /locus_tag="PXA71_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL5105083.1"
                     /translation="LDLVNLELGWQELENGIRMNVMSFETTPAEGKKAELHRKFIDIQ
                     LLIDGEEMIEYGLSQPDLSKYDEYRDEDDYQLTAEIDDKNNLILKPNMFAIFLPYEPH
                     KPGNSVNGNKTLKKLVVKVPVELI"
BASE COUNT         6945 a         5541 c         4858 g         7362 t
ORIGIN      
        1 aacaggaaat tttggtaagc tccgaaaata acaagaaagg aaaaacagca ctattttatc
       61 caaattacca atacctgagt tttaaacaag cggttatttt tagccgtttt tttgcaaaat
      121 ttgaagaaaa aataaccgct tgtcttgtta tgtcgagaac ttaaaatttc atctccattc
      181 ccaacataaa atttcgtccc atttgtggta caaattggtg atacgaagtg tggatataca
      241 ccggctgatt cagtaagttt gtgccgttta gactgatttt gtaatccagc tctttccact
      301 tattgctata cgacaacccg acattcaaca tcgtattacc ttcggtaata tattccaact
      361 ggctcgtacg gcgttgggta aaggtgcgga tcagctctaa atcccccgac caatttgggg
      421 taaattccgc attaaagcga aaacctaaac gcattggcgg tgtacgaggg gtgttttggt
      481 cagcccgata tagaagataa tctttccctt tttccacatt ttccggcaga taatctttga
      541 acacactata atcgctattt atcttcaatg gtggtaaatt tgttagccag cctcgtacca
      601 tatcgccgaa aatcgtggct tggtattggt cgttaaagcg gtagcttgcc tctgcttcta
      661 ccccgtaaaa acgggctttt gcctgattat aacggcgcat aaatagctga ttttcacgga
      721 aaagattttc attgtagatg tagtttttaa agtgattgta ataaacactc actttatagc
      781 caatacgttc agcttgatag cccaagccca actccacatt atttgactgc tcttttttca
      841 agtctttatt gccgtattca aacgaattag tagcaatatg ctgcccgtga taatacagct
      901 ccattggcgt tggcaagcgt tcattgtgcg aggcagtaaa cgaaagctga tagtcagggt
      961 ggaagaacca gttaagcgtg ccggaatagg cataagccgt ttcatcatag ggtgaaagat
     1021 ctggctcaac ctgtttgccg ccactgatac ggtagtgttc ttgtaaccgt ttgatttcat
     1081 tgcgatcata ctcaatctca atcttctgct tttccattcg tccggcaagc tcaacagcaa
     1141 cgctatccca catatactgc tcaaccccaa acaggctgaa ctgtttattg gtattttcaa
     1201 ccagcgggaa tttcacttcg cgatctttcg gcgcattcat actgcttttt tgcgtttgat
     1261 actgaacacc ccatacaccg gttaagccac ctagcggtgc gtgatagacc tccaagcggg
     1321 tatttttgcc ccgatttttg aaaatattca ccggcttgcc gtaatcctga tcttttttca
     1381 gctgtttatg gtaacgggtg gcaagcacgc ctgcatcttt ttcatcgtgg taataatcgg
     1441 catcagcata gcttgcctta attttatcta cgcccttaaa cggctggcgt agctcggctt
     1501 tcacatcaat ccgttttgat tctaaatcca cccacgggcc tttgtgagtg tgatcgtggg
     1561 cgtgtccgaa cgggttatcg tggctgtgtg tgccgtcctc ggcgtggttg gttccacagt
     1621 ggaagtgcgg attgctccca atattttcct caccaatcaa atgcggatag agataggtat
     1681 aagcgtattt atcccgctta ttaccgtaga tatgaccggt acagaaatca aatttatggt
     1741 tatgccccgg caagccataa ttatcccgcc gtttgctgta tgaggcacca atatagcctc
     1801 gttcaccgac aaaggataag cccaacgtgc cgactttgga tttattgtaa gtgtccggca
     1861 catagtttaa gcgctcgcct aagttgatcc ccggcacacg gtagttatca ctatgacgac
     1921 tcagcccttc gactcgcacc gcaatgtggt taccgatgcc aaaggttgcc cctaatgcgc
     1981 cgactttctc tttggcggcg gtatcaaaac ggctattgag ttcaacctca tatccctttt
     2041 caggaatagc ggtcggaata cgtttatcca ccacatttac aattcctacc ggcgaactgc
     2101 tggcataaag caaggtgctg gaaccacgca agatttcgac ctgatcggca agcagtgaat
     2161 cagcaacaac ggcgtgatca ggagataggt tcgacatatc aatcacgtct gaaccgtttt
     2221 gcaaaatgcg aattctcgcc ccttcctgcc cacgaataat cggcttactc gctccgccac
     2281 caaacgggtt actatgcacg cctaattctg acgccaacgc attacccagc gttgccgaac
     2341 gctttttaaa ttccttacct gcaataattt tatcactgac ttttagcaag gtaacttcac
     2401 tcccctgcga tatacttgga gtgctgccaa cgaccgaaac ttcatctaac accgctacat
     2461 cgttattttc cgcccaaaca agcgggctaa attgagccga aatcagcaat gccaatcctg
     2521 ttttcttaaa cacaatcttt ctccttaaaa aaattaagga taataaggta ctgcaaaata
     2581 tgagtcttta caataataac cataaaaaaa ttatattttt taaattttcc ctattgccaa
     2641 acaggaaata tatccattaa aattttatgg atttaatctg acggagacaa aatatgcgtt
     2701 ctacattcaa acttactctt gcagctttag ctgtttctat tgttttaagt ggctgtaaat
     2761 ctagccaagg tccatctatt gttgcagaca gccctccacc taaggaaata acagctactg
     2821 atggcaacga taaagagaaa accgataaca aagagaaaaa gtctgcgcaa ccaaataaat
     2881 ccgatcctca accggataaa cctgctaacg caaaagaccc agtaaaacct gatgcggaga
     2941 caaataaacc aagtaaaaaa gataaagaat atacaccacc tgctactgaa aaaatcgata
     3001 actcatcagt acagccggat aaaatggtgc ctaatcctat cgagaataag gaaaacgaca
     3061 gtaataaacc taaccccaaa gaaagcgata gcgataataa tgacaaagtc actgaaggca
     3121 ataaaccaaa tgccccaaca gaaacagtaa ataaagataa agaagctgag aaaagtaaaa
     3181 aggagaataa agaggactca agcaataata ctcctaacat taattttgac ggggcaaagc
     3241 ctatagatac agatagtaaa ggtagcccgt accgagtaat aaacctaaat ccgagaaaaa
     3301 gcgtagtaaa tgcaagtgct atgcaaaaag tagatttcga ctcttttacg gatgaatctg
     3361 ttgaaaattc accatttgtc agtagcgata ctgaaaaaga atacaataat acacttgttt
     3421 ttgggcttgg tgccggagat aaagattctt attttaagaa cttaaatcaa aaaggggata
     3481 aacatttagg tattcatagt ggcgtgtatg aagatgcgaa tttagaaggt aatactaaaa
     3541 aaattaacta tctctatgta aatcaacctt attcgagcta tggtgcttta tttacggacc
     3601 aaaaagacag ccatttattc aacgttcgtc tgaccgctgg tagaggtgat gtaaaagaaa
     3661 atggagatag ttatgccgaa tatggtgtat tcacacaatc aggaaaagaa gctaaatgga
     3721 atgataacct gattggtgat gccacttaca aaggtcaagc tattgctcgc gttattcgtc
     3781 aggtaaatgg ggaacaagtc gcaggtattc ctcaatttga tggtgatgtt acattaaatt
     3841 tacacctttc caaagaatgg aatgaaagta aactaaacgg caaaattgat agccaaagtg
     3901 ttggggtaat tacacttaaa gaaagtgaaa tagctaaccc taccgcactc cgctcaaata
     3961 ttggttttgg agaagaagtc atagttgaga ataaagagaa tcttgtgggt gattacgctg
     4021 tcgattttac cgggcctcag cttgaagagg cggtaggcgt tgttgaatta gaaaacgaag
     4081 ccgagacatt ctctgaaaat gaagtcatta aatacaatgc ggtatttggc gtaagcaaag
     4141 cggcgaaata gtattttttg tatcttacaa agggctgtta agccctttta tttttattat
     4201 tttaaggata aaaaatgaaa aaaattgcct tactggcact tttcccaatg atgttatttg
     4261 cccgagatcc taatactaca caggcttata ttgagcatac tgcacagcca actacaaccc
     4321 cccaaagggt caagatcgaa aaatcagtgc ctatttttaa cgaaactgaa ttacgtgcta
     4381 atcaattatt gaccgaaaag ctacttatcc aagctattta tagtcgtagg cttgctaaca
     4441 tggaaaaatt aactgcgatt tatcgggatt ttacccacat tgacccggtt ttactgcgtt
     4501 atgcacaagg taaaattgcc ctactgaaag gcgattacgc acaggcaatt cagcacttcc
     4561 aaaccattct tgccaaacaa cccaaactaa acactgtaag aattgagctg gcgattgctc
     4621 tattgtacga tcagcaactt aatcaagccc aagcacaatt tgaaaaagcc aaaagtgccg
     4681 aacatctacc gcctaaagtt cacgcattaa ttgagcaata tcagcaacat ctggcaaaaa
     4741 aacaggaatg gaaatttagt ttttcagcca attatgtgcg agacggcaac attaaccgaa
     4801 cctcgaaaca gccgaacatt gagcaaaccg gctatgtaaa acaacctaat ttgttgcccc
     4861 aaaccgcaca tggtgttcac tatgcgtttg gattacagag agatttcaac ctgttcgact
     4921 cacactatgt gagttttgac aaccaaaccc aaggtgaact ttattgggat aaccacgatt
     4981 atgatgaaat taccaatcgc accttgtttg gatacgctta caaaaaatcc gaccaaacca
     5041 cccgcttgtt accgttttat gaaaaacgct ggaaacatca ccgttcggaa cgctggacaa
     5101 acggaattcg acttgaacac gcacaatggt tttcaccgca ttggcaactc gccaccgcat
     5161 tggaatacgg caaaaaacgt tattttgatt tgccgattta taacggcagc tacaaacttg
     5221 cctctgccac attgctttgg ttacgcaatc cacaacaatt tttctttgtc ggcactgatt
     5281 tcaatcaaga caaaactcag ttaaaacaat atagctctga tactaaaggc atacgctttg
     5341 gctggcaacg agaatggcaa gccctcgagc tttccagtcg cctcacgctt ggctatactg
     5401 acagacgtta caaagacacc gctatattgg gaggaaaact taatcttggc agaatccgcc
     5461 atgaccgtgt gcaaagtgct aacctcacgc tttggaaacg agattggcac tggctcggcc
     5521 tgatgccgaa gctgcaattt agttacgcca aacaccgtag caacctgccg agcctctatg
     5581 cctacaccga taaaaacatc aatttaatta ttgaaagtcg gttctagctc cataaaaaca
     5641 acaagcggtt aaaattccta gaaattttgc aaattgcaaa aaatgtagaa aatttaaccg
     5701 cttgtatcta tactgcagct tcttttcctt cagtataaat taatatacac cgttgcaaca
     5761 ataatggctg ctccctgtca tcaccttgaa ctgaaaattg ctcaaggtgg atatgactat
     5821 cgcagccgct tccaccgcac ccagtaatgt atgggcaagc aggttggctt gggtatctac
     5881 tttttaattt gttcgttgag atatggcgaa gctaagccta ctgctgcttg tcctgaatct
     5941 ttcgccgcta aaccttgtaa ggctgccgtc accgcatcca ccgcacgctt ggttttgctg
     6001 cccgtgccgt aggcgttatc aaaagtctgc tgtttatcgt ttaaatcccg ttttaattgg
     6061 agatattcag gatgttgagc gatttcttct tttgtttttc cctcatttct caaacgggtt
     6121 tccactttgc ccaattccag cttcgcttcc gtcacttttt cacgctcact atgcgtgtaa
     6181 atctgataag ccttctgcaa tctcgcctat gcccttcacc agctcctgtg tttctttcac
     6241 ctcactgata tcgtatttcg tcactttttg attggcgttt tgcgtatctc ggttgagatg
     6301 attaagcgta gtttccgcat ttaggtcttc ggtgagggtg atagcgatat tttctccaat
     6361 cgctgccttt gttgtgcttc gctcgctttc gtttttattg cccagtaagc tcagtgccga
     6421 catcgggttc accccacttg tccctccgct aatcgcgaca cttcgggttt tcaattcact
     6481 gtggttttca atatcgccgg tggtcagcgt gccggcttgg aagcggttgt tttctttctc
     6541 cgcttggcta gtcattaccg ctccctcaaa atgggcgttc tttttcactt taacgtccat
     6601 tccactcttg cctatgtcga ttgcagtttg gttttccacc tgagcagtgt tcaacttcgc
     6661 tccattatat gccacatgac catttactcc tgttgtccct accgccaatg tgccatgtac
     6721 gctgccttct gtgtattcgc ttttatattt gcttatatct tgtcgacttc ttgcctcaaa
     6781 atcttgtacc tcaccttccc aatgatttgc tttgacattg gttgcatcca gcatgagttt
     6841 accatttgca gaatttgtaa caattttacc cgcttgcagt tggttgttct gccacgtttc
     6901 agtttcgata ttctccttgc ctttacctcc actcactcct gcctcaaaac caataccaaa
     6961 actatctcta tctaaaccga taaatacgcc cacactcgca ctgtgattct tattcttagt
     7021 gttgttttga taagtatccg caacaccttt ggattcaata cccagcttac cgtcaagcag
     7081 cagggtgtct ttcactcggg tatccacccc ttccagcgca actttgcccg ctcccgaaat
     7141 caaggcaata ttgccgccgt tcagggtgct tttgctgtgg gtcacgcttt gactacggct
     7201 ttctctttgc tgtttttgcg tgccgagact gactgaaatc ttcaccgccg gattttctgc
     7261 cgcagcatgg ttttctgtga gtgcattgcc aagattgccc agcgtttctg ccactttctg
     7321 agcattttgt gctgcaatca cggcatcctc cgccgctttt accgcatata cccctttgag
     7381 tttctcgttt tgtgttgcct tcgctttttg caccgattgc cgtgccgatt gcaccgcatc
     7441 cgttaccggt gtactcaacg caatgcttaa gcccgactgg ctaaattcat aattatcggt
     7501 gctgttaata acatctttcc ctgattcaac ccgtaccccg tttttgcctg aaatcacggc
     7561 ggttttttcg ttggaaatca gcacatcgac attgctcacg ctcgctttat tgccggcttg
     7621 aatccgaata ttgccccctt cactgcccaa tgtattgcgt gccgtgcttt ggattgcccc
     7681 ctctaagctg ttctcttggc gtgttttttg gctaccgata gtaaagccga tttcaccacc
     7741 gttcaagaaa ccgctgcgtt ttgtctcacg aatatgctgt tctgaaagtt ggtttgttgc
     7801 cgaactgagc gttacattat taccgccgat aatatcaata tcgccactgc gtgagacggc
     7861 aagaagactt tcaccttgaa tatcgtgacc ggctttcact aaaatgtctt caccggttag
     7921 ttcagtgcct ttgtgttcgg tttcagaaat attgtcataa gtcgtttttg ttttcttcgc
     7981 tagcgcacca ccactttttg ttttgtgata ctcttcataa tcgcgagaac gtgttgcgct
     8041 acccaacacc atatcatttt cagccagtaa cgctaaacgc gctttggcat ccaaatccgc
     8101 tccttcactg taaaggtttt tccctgaaac caccacatcg cctttgcctt gcacccgtga
     8161 aatgaccaca tcattcaagg cttcattacg atagtgattg ccaccgccca ttttttcatc
     8221 aaaaccaacc tgtaaagcgg tcaaattcaa ctgatttttt gcagataagt aggtctgccc
     8281 ctgtccgtca ttgatgatgt ctgcgcctgc tgaggtgatg ttgcctgcct gtacttgcag
     8341 cagtccattt tcatctttaa cgtgcagtag ggctttgcgg tcaaggttgg tttcagcgcg
     8401 tttgaaaccg tctaggtcaa tctgtgtggt tcgagtggtg gaggtatggt taaaattgcc
     8461 cgcaatatcc agcaaaatcg ctttatccgc ttcaatcttg ccgccgatat tctctagatc
     8521 accgctcact ttggcagcaa gcacgccacc actgagtgtg ccactattct ctaaccgttc
     8581 ggcattaaac tgtgctaaac ggcggcctgc tatcgtgcct tggtttacaa tctctttact
     8641 gttgatggta agcgcatcgg ctgaaatcag gctgcctttg ccgtcaatat cacctttgcg
     8701 tgcaagggca tacactttcg gcactaatac cgataccgtt tcaccgcttg gcaagcgaac
     8761 cgtttgggtt tcaaaccaaa caatatcgct ggtcaagctt gccacttgct ccggcgataa
     8821 ggtaatgcct aaccgaagat tgaatttctg cgcaaaggtg atgccggcat ccatcagggc
     8881 tttatattgg ctatcaaaat ccgtatagtc gcccaaaaat tgtctgccgg ttaagcggtt
     8941 gatttgctct cgaattaagc gctgttcata aaaaccatcg cccaaacgtt tatgcacatt
     9001 gttatggtcg tggcgtaggg cattgaacat ataatcactg cttaaccagc gttttttatc
     9061 ggtgaaatcc ggatcggttt cgatcagaac atggctatcc gcttgagggt taatgcgata
     9121 aagcccttgg tttggcaaac gggtatcgac cgtcattgag cgaacctcaa atgcggctgc
     9181 attcgggctt ggtatgcgtt caatcgccat tgttggcgga ttaggggcat cgggtagatt
     9241 accccgttca acctgattgc cttccggctt cacggcattt gctgctttag cgtccacata
     9301 atctgtataa gcggtcggtg aagtattttc cagctcgaca aaaatattca tatccttatg
     9361 gacttctttt aaacgagcga gaggaccatc attttcatcg tagcgggagt ggcgacgtct
     9421 tgtgcctccg tggtactcag taaaagagaa ttggcgcctt cccagttccc aatcttggcg
     9481 aacagcatct gcatcatcaa ggttggcaat tctactgcga ccaatcgggt ttaacgcttt
     9541 gcctgcaata acccaacttt tatcgttgat aaattcatcg ctttgataag tgagatcgcc
     9601 acctgccaag atctgtgccg gtaagctggc tttggtgata ttctctttta ccatacgctc
     9661 tttaatccac aaattccaga aatgcgggta ttcttggctt aaattcgctt tattgtgctt
     9721 tgcaatcgct tcatctaatg cttgaatatt ggcaccatat tttgcttccc aatcaattaa
     9781 cggttttaat agcacataac gctgataagc cgcttctgcc gcttcatagg ctttcagttc
     9841 cgcttgatat gtttgtagtc gtttttggta ttgggcttcc gtttccgtag agcctctaac
     9901 aggttcaatc ggtcttgccg gaaccaccgg tgcaatgcct tgcccttgtt ccttctgtaa
     9961 tttttcctgc tctgcctcac ttaaatgctg attcgctaaa tcttcttcat tcattgcttg
    10021 aataatttca ggcgtcattt ccggtgcatc ttcagctggt ggtgttaaat taaaccacgt
    10081 ccatactggg ttatcttttt tataattacc tgcaggtaat agagtacaat ctacactttc
    10141 atcattcgca cagctttgag catagggttt tgccaatacg gtcgtggcat tcagctggct
    10201 aatatcggta attaccggca agtttgcttc atcatacttt tgccaatagc tccacgtttt
    10261 gcgatagtag cctttgcgga gttgattcac attaattgtc ggcaaatgcc cgttatcata
    10321 tacatcactt ccacctcgat tatgcttatc tcttggcaaa ataaaatgtt cgttcacagt
    10381 ttggcgatca gtggtctcca attccgaacg ataatgacta tttacattcg ctaccttatc
    10441 cgcattcaac tgaatacgcc cttcagcttc aataatactg ctgcggttat gtagctgccc
    10501 tgcgttgcca ataacggtat cttgctcatt taattgacgt ccaatcgcta tctctcctcc
    10561 gctatatatt aatgaaccgc ttttcttatt cgcttcataa actagggtat tattttcaat
    10621 tactttagcc gctaaaccga gagattgacg agcagcaata gtggcagagg tcccgtcttt
    10681 atcttgattt agtatcctct ccgcacctaa cgccacctta tcgccataaa tattccctgt
    10741 gccgatattg tggatttctt gagctttaat cacagtttga gcgttatcgt tgtccgagcg
    10801 gctattgatt aagccttcgt tatagacggt tgaagttgca gtcaaacggg tatctgccga
    10861 gcttattcgg gcattttgtg cattggttat ttggtttgcc gtgagctgca agcggtcatt
    10921 tgcggctaat tttttgcgat tgagaatatc gccctcagtc tgaataatca tcgacctatt
    10981 cgcattgata tctttggtaa tatcaaagtt ctcttgcaaa ttcaggcgaa tatcgcctgc
    11041 ttgtacatca ccatcaccgg ataacgcttt ggcagtgatc tccaaaccat tatttgcaga
    11101 aacttttccc tcggtattcg tcattgtgag tgattttccg ccgaaaatag ccagatcgcc
    11161 ccaacttaaa atttccccat tacggttatt taagctgtcg ctgagggtaa atcgtgctga
    11221 tgagccgata taaataccgc ctttttcatt attgagctgt tttgtgctgt tcagtacaaa
    11281 ctgcgatgca ataatcccct gtattggctg aggttggcgt gccaaggtac cttgattttc
    11341 cacctcgaaa ctgttcatcg taagtgagcc acctgcttca ataagtgagc cattttccga
    11401 gatccgatta tttaagacag tcggtacatt gagcgtgata tctgtggccg atttcagtac
    11461 cccaccttgg ttatccaaaa gcgtgctatt tagggtgaga tttcccacac tttgaataac
    11521 accgtgccga ttatctactt gttgggaaac cgtgagcgct aactctttta ctgaactaat
    11581 ttctccctgc tcacggttat ctaaggattg agcgttaatc gcaacaccgc tggcggaaat
    11641 tcgcccgcct tgattttgca gttcgctagt tatatcaagg gtttgctccg tttgagaggt
    11701 gatcaccccc gattgatttt ttaacgtatt gaccgtaatc gcctgttttt cgccactcaa
    11761 aatcagacct tgctgattat tcagcaatgg agcacgaata gataactcgc cttttgcaac
    11821 caatttgcca tcgactgaat ccacagcatc atttaaattt agccctaaac gcttgccact
    11881 acttaatagc ccttggttat ttgttaaacg attaccgtca atctcaaaat gtccacccac
    11941 tgaaaagcga gccgagtcag tatggatact ctctgctttt aggcgaaaat cctgctcacc
    12001 agtctgcttc caaaccgagc cacgagcatt taaattcgct tgttgggcct caatcacctc
    12061 tgcggttagc tggcttcctt cagtggaaag ccattttggg gtggtgagct tgatctgatt
    12121 tgcactaaac tgcgcactat tcgcctgaat atcgcccgat tttgcactgt attcaacggt
    12181 atgggcatta ttttggctct gattggcatc aatctcagct gccgccacgt taattttccc
    12241 cgaagcgata ttttttccct gcacagtggt tttttctggg gcagtgagtt gaatagtttt
    12301 ccctgccaca gattgagctt ccagcttccg tacttcacct tgtgcagtgt cggttacgtc
    12361 caccccagcg gcaatcagtg agtttttgtc ggcgtgaatt tggcgggcgg tgtaggtgat
    12421 attgcctttt gcgaccgttt cgccactttg ctggatttta gtttcggctt ttttctgaat
    12481 attgccaccc ctcgccacga tggaaccgct attttgaata tcggctttcg agttaagctg
    12541 aatattgccc tgtttatttt caattttgcc ttggttgtca atcccgtgtt gggcattgag
    12601 ttgcacttgt ctttgagcgt tgaacgtgcc gctgtttaca atccgccctt gactgtcaat
    12661 ggtgagcgta tcggcacttg caccgatatg cccagcgtta cgcacgccca cgccctgttc
    12721 cgtaccaatc aggtggattt tgccggcata cattccgccc agctcaccca catcaatcgc
    12781 aactgtgggc ttttcttccc ctgcaagcgg ttgatttgta tgaataattt gcaaattgtt
    12841 gtccgaattt gaccgcttga cggtgttttt gccggtaatg actttagtct cttttttcga
    12901 ccagacaccg gcgttgattt tcgcttctcg ggcgaggata tcggtgtaat ccactcggct
    12961 gttgtccagc cctttgccag caaccgttac cttgcctttt tccactacaa aaccttctaa
    13021 attgccttga tttatctgtg gttttccggt ggtcagcgtg gctcggtcgg cgttgataat
    13081 accgcagccg tcacagtgca agccgctcgg gttggcgata atcacttccg cttttttgcc
    13141 agccacttcc acataacctt tcattaccga aggcttactg gaattgactt catttaaaat
    13201 caccttcgct tcgccacggg caagatacgg gttgccttgc accataccgg cttgttgggt
    13261 ggcggtgttg gtgcggctgt tgttgagaat tgcccccttc tccgctacgt caaattggct
    13321 gtatttattg tgggaaagcc ctttatcgtt cggggtttga atattgattt gtggcagccc
    13381 gttggcggtt tgcaaaataa tcggttgctg atttttcggg gcagtgctat cggcttgaat
    13441 aatcaaagtt tccgccatag cgttgtctga taaggtaacg aatcccaacg cacagaacaa
    13501 gctgaacgca agcggtcgaa ttttgcaaat tttttgtaaa attgcaccgc ttgtcatact
    13561 ttcactttct gatttacctg ctaattttgc taattcagat accaccacaa tacgttgtaa
    13621 ggtcttgctg aaaatagtgc gaaaacaatg cttattcata ataattcctt aatagcacaa
    13681 tatacttaat acaatatgcc caatcattca ttaaaaattg taaccaatat taaaaccggc
    13741 aacggtgtct gaggttttaa acccttccgg ttttcgcatc ggtctaccgg caaacacgtc
    13801 ataactaaat cctttaactc caccccgaaa cccaatggct gttcccatta aatgatgtcc
    13861 gagctgattt tccgttgccc aaccggacac tcgaccacca tctaccgccc aataaaaagc
    13921 gtggttcgga ttaaattgcc agctcaactc attacgccag ttccagcccc gctcaccgga
    13981 aagagtcagt tcaccgtcaa atccacgtat ggtgtaacgc ccgccaatcg aaaaacggtc
    14041 ttgcggaacc agaggggttt tattccattg ggcatttagg ctactttgcc actgccatgg
    14101 ctgcttgccc caaaaaaacg gtttcgtcag gcttgcactt gccgtgatga ttttagggcg
    14161 agaagtccct tcgccataat cttcctcggg agcagataat gcccctcgtg ctgccgtacc
    14221 tcgtttgaaa ttagccgaaa gctcaagcgt agcggtcggg aaatattctt tatgcgaaaa
    14281 acccgcttcc caacctgcca ttcggcgttt ttgtacttca atttctgagc cgtcaatata
    14341 gttttgcgac tggcgtggcc aaagtgaacc ggacaagctc gttttacgtt tggcatcacg
    14401 ataaagcaaa taagaaaagg ttaatttatc ggtatcactt tcaccggcgt agagatagct
    14461 cttgtcaaag gcaccaaata cttcttgatg ataacgatga tgagtgtgtg aaaatgctaa
    14521 ctgccaatag ccaaacggca cggaatagta aagcgtgaga tttttactgg cacgtctgcc
    14581 gttatcatca cctttttgtt tcatcgaatg ggtaaaagag gtatagaaca ggtcatttgc
    14641 cgaaaaaata ttatctatag acagagtggc ggaggtttgt aatttgcctg tggatttcga
    14701 gccggcatcg tccagcccaa gatttaagcg aaatggaaac gcttgcgaat agctgatttt
    14761 taaatcactg tctcccacct ccgctttttc gcttgagctg ggtaaaatct caatatttgc
    14821 ctccgccgtc ggcacccgtt ttagattttc cagagactgc tcaatatctc gcacattcag
    14881 aatatcgcct tcggcaaaag taaaaccggt taaggcgtgc agcttggtaa aacgcggtac
    14941 tttgccgcta tctaccacta aagtattgcg tattttgccc ggaatcacgg ttaaaactaa
    15001 ttttccgcca cgtaaatctt gctccgcagt aaccactcgt gtagtgacat aacctttgcc
    15061 aataatttca ttttggattt gcttcatcaa cacagctaac ccttcaccac caaagcagtg
    15121 aggtaatgtc aaatgaaatg attttactgc tttttcaaac gcccattgga attggctggt
    15181 agtcagagaa ttgtcaggag aatagtcaat gagagtgatt tgatgaatgg ggtaacaagg
    15241 caattcgtga ttggaaagag taagtgtatc attgatttgt gtctcgagcc gtacatcagc
    15301 tttcggctgg aatttttctg cttgattttg ttggtattgc tgttggcgat gttgctgggc
    15361 agcatcaatt tgttgttgag ttgcatcaat gcgtgcttgt tgtacaaggc ttgaagaatt
    15421 tgcttcagca acaaaagaag cacttaacaa taccgtgctt aaaatcagat tttgtggggt
    15481 tttcataaga tcaaataagt aagacattca acgtttttag tctataaaaa tttatgttgt
    15541 tttgcaaact ccgttttatg gagctttata catatctgac gactttggtt ttttatgcta
    15601 ttatctccgc catttttata ctatagagaa tagaataacc gtgttagttt cagattttca
    15661 tttcaactta cccgatgagc tgattgctcg ctacccgact gccgaacgct ctgccagccg
    15721 tttattacac ttaaatggcg aaacaggcga atttgccgat caacaatttg tggatttata
    15781 cgatcatatc aacgaaggcg atctattgat cttcaataac actcgagtga tcccggctcg
    15841 cctttacggt cgaaaaccta gtggcggcaa agtagaggca ttagtggaac gggtgctaga
    15901 tgaacaccgc tgcttggctc acgttaaagc ctcaaaagca ccgaaagaag gggctgaatt
    15961 gatctttggg gaagataagc taggtgaagg caaaggcttt acggcgacaa tggtagctcg
    16021 ccacgatact ctgtttgaat tggtgtttaa cgaagagcaa ccgttattcg aattgctaca
    16081 gcaagctggt catatgcctc ttccacctta tatcgaccgc cccgatgaag atgctgacca
    16141 agagcgttat caaaccgttt atagcaaagt gttaggtgca gttgccgccc ctaccgccgg
    16201 tttgcatttt gacaatgcaa tgcttgaaaa actaaaagca aaaggggtgg atactgcctt
    16261 cgtaacattg cacgttggtg ccggcacttt ccagccggta cgggtagaaa ccattgaaga
    16321 tcataaaatg cacgccgaat atgccgaagt gagccaagaa gtagtcgata aaattctcgc
    16381 aacgaaagcc aaaggaaaaa gagtgattgc aattggtacg acatcagtac gttcggttga
    16441 aagtgccgcc caagcggctg aaaaagatgg gaaattgatt gctccgttct tttctgacac
    16501 cgctattttc ctttacccgg gaaaaacctt taaagtcatt gatgcgttag tcaccaattt
    16561 ccatttaccg gaatccacgc taattatgtt agtctcagca tttgccggct atagaaatac
    16621 gatgaatgcc tacgcccacg cagtagaaac taaataccgt tttttcagct atggcgatgc
    16681 gatgtttatc aataaaaacc caaatgcgtt gagtgatgtt ccttaattta tgagggttat
    16741 aagggaataa cattatgaac aaaaacaatc ttccaaccat tttaagggat tgttttcaat
    16801 atattcaata atttggaagt acgatgtttc attacgaata atgtgttcat aataattcct
    16861 ttgccaaatt tcagaaatat cggtattttg acgaacccat ttagttacgc caattttaaa
    16921 accacgcaca atagagccga ttgttcgtga tgttccccgt aagggcgaaa catttttcgc
    16981 ccttatacat ggggcaaatg atgatttgcc cctacagttt cgacgatttc aataatgcca
    17041 tgtaaatgat taggcataat cacaaagcta tgcaagctta catttggaaa atgatcgggt
    17101 atatcttccc aacattgacg tacaatattc cctatcttat taagcctcat ttcatcatca
    17161 acaatctcac cgagaaaatg gtgtttattt ttacaacaaa tagtaatgaa atagaatcct
    17221 tgtgatcggt aatcataatg ctttagacga attgaacgcc tcctatgaat ctccggctga
    17281 tatttctgca tttttcttat tccttaataa aactgcttat accaagggga aaatgccccc
    17341 cttgcctgct caatttcaat agaacttggg taaaatttta ctcttatcat tcccgtttct
    17401 acggtattta atacattaat atgtcttctg tttaatctct caataatctg tttattcggt
    17461 aatttccatg ggttccatct tccagcagaa atcactgcaa atgctggctg ggtaatcgat
    17521 aataaagttt cgccagtgct gcttttgcta ccgtgatgtc caacctgtag aaaatcaatt
    17581 ttgccgagct gatgggcaaa ttggcgttct tgttccacgc cagaatcccc tgtcagtaat
    17641 atcttcaagc ggtcgttttt ggctaaaata acgcaagagt cttggttttt agctcgttct
    17701 gcaatgtgtg acgggtaaat tgccaataat tgccattcgc caaattgcca cgatgttccg
    17761 gcaatacaag gctcgggatt tatattgtga tacgtcacct tgcttgaact aattaacctt
    17821 gcttttgggt atgcttgcaa taactccact accccacctg aatgatcatt atcatcgtga
    17881 cttagaaaaa tcgcctctac ctcaatgcca tttcgcttta aatacggcaa gatttccatt
    17941 tttgccattg aattgcgact accatcattt gcttgccaac tggagccggt atcgtaaatt
    18001 accgctttat tttgttgata aatgaacgcc attgccagcc cttgcccaac atcaaacata
    18061 atccattctg tttgggtttg attaaagagc ttagggagat aaaaactcag attgaacaat
    18121 agggataccg ctactgcact taaccacttt ttataagata gccgatataa tttgcaatac
    18181 agcaatacta aaaccaataa attcagtgaa agtaactgcc actgttgcca atggcttaat
    18241 gcaaaccacg cattagaaaa tggatctaac agccataggc taaattgagc aagatagtcc
    18301 gccaacagcc acgttgaaaa cagattgtcg gtcaagagcg taaataaaat aagcggtaca
    18361 agcaaaaagc tatacaacgg cacaataatc aggttggcaa gcagtgcaaa agcagagatg
    18421 ccctcaaaaa agtagagttg aaccggtgag aaaatcagcc aaatgccgat ttgtaagtgc
    18481 aaaagcgata accacaagcg gttaaatttt gtgatttttt tacgatattc atcgtttaaa
    18541 aatcggctaa gaggaaaata ttgataccat aaaattaaac ttgctaccgc taaaattgag
    18601 agccaaaaac tatcagaaag caggctcaat gggtcaatta aaatcagtaa cgccactatt
    18661 ctcccccaat attgccaagg ggtatagtgt cgccgcagaa cttggcaaag caagacaaac
    18721 gcaatcgcca gcaacgctct ggcggtcggc acggcaaaac cggctaaata gctgtaacca
    18781 aatgcggtga tgaagctaac tattcttgca aaataaagtg aaaatccgac cgcttgtaat
    18841 gcggtaagct cgcttttcaa gcaaagccat tgcacgcctt tggcaaagta aacaccaaac
    18901 aacattgcca gcccgatatg caagcctgaa atggcaatta gatgggcagt agcggtttgt
    18961 tggaattgcc cccagtgttc tgttttcagc cacgcccttt caccaaaagc cagagccaat
    19021 aaaaagcctt gcgtaggcaa agcgtccgtt tcagctttca ctttattcag ccaatttgtt
    19081 cgcaagctat aatcagtttt ggctaatgtt tccaccttgc gaaccgttgc tgtcatattg
    19141 atatgattgg caaaatacca acgctgtcgg tcaaaattac cgatattgct acgagctgaa
    19201 ataggacgaa gagccagttc ggcttgatag aattgattaa gtaacaacgg ctgtttcgat
    19261 tgccagttca agtagatctt ctcgcctgta tttagtgtcg caatcgctgt ttgataatcg
    19321 gtttgtttta agattttact gatttcaaat tgaacaggcg ttttactagc agtcgttttt
    19381 tccgcatttt ttgcaacttg aatgatctga atatagccaa tacaaaccaa taagccgagt
    19441 acagccgtta attttgagcg tagataaaca ctcaatatca gcactaaggt tcctattact
    19501 atacccacaa atagaaacgc tttaggcaac cataaaatag gcagatgaaa tagaatcagg
    19561 gcaatacaaa aacggtctaa agtcataatt cggcttactt tttaaagctg agtatgccgt
    19621 ttgtgcttaa tattttcaga ataaattttc agattttcga cacagttcgc aaaaatactt
    19681 gaaaaaataa aggcagactt tttagcctgc cttataaaga agagatatta tgctgatttt
    19741 tgatcttcag cgtaacttac tgctgcagtg aataatacgt ctgttgatga atttaatgcg
    19801 gtttcaaccg agtcttgaat cacaccaatc acaaaaccca ccccaattac ttgagcagca
    19861 atatcgtttg gaatattaaa taaactacag gctaatggaa tcaataataa tgaaccgcct
    19921 gccacacctg atgcgccaca agcacagatt gatgcaacta cgcttaatag tagtgctgtt
    19981 gcgaaatcag gttgaatacc ttgtgtataa gctgccgcta gggttaatac ggttacagta
    20041 atcgctgcac ctgccatatt aatacttgca cctaatggaa tagctacaga agcgatctca
    20101 tcacgaacgc ccaaacgctt ggctaaattc atattcaccg gaatgttggc tgctgaactg
    20161 cgggtaaaga atgccgttac accactctct cgtaaacagg taaatgtaag tgggtatggg
    20221 ttgcggcgaa ttttccaata cactaataat ggatttagta ctaatgccac aaataacatt
    20281 gcgccaacta agactactaa taaacgtgcg taatcttcaa acgcatcaat accattgatg
    20341 gcaacagttt cagctactaa accaaatacc ccaataggcg caaatgcaat cacaactttc
    20401 acaacaaacg aaactgcgtt agctaaatca tttaagaatg cttttgaact tgccgaacca
    20461 tggcggaatg caatccctaa accgatagac cacgcaagaa taccgataaa gtttgcatta
    20521 cttaatgcga ctaatggatt atcaactaag ttaaaaataa cggtttttag aatttcacca
    20581 atgccttgtg gcggggttaa accgtctggg cttgcagtaa gctctaatgt agttgggaac
    20641 ataaagctta aaacaacagc cgttaatgcc gcaaaaaatg tacctaatac ataaagcacc
    20701 agaatcggct ttaatttgct atctgaacca acttctttat ttgcaatcgc agccaaaact
    20761 aatacaaata ctaaaatagg cgcaatggca cgtagtgatt tcacaaaaaa ttgacctaat
    20821 acaccaacgc tggtagccca ttctttatta ataaatgcca gcaatacccc tagcactaaa
    20881 ccaatggcga tacgtaatac taaattaccg ccaagaattt ttgatgataa tgattgactc
    20941 ataacccttc acttctgtaa gacaacaaaa aataaggata aataaaattt atccgcctga
    21001 aaaaataggt ttataagatt agcggaaaat aaacaaatat ggaataaaca agcggtttat
    21061 ttttcagatt tttttacaaa aaagtgaagt tttttacatt ccatggctat catattattt
    21121 tttccttagg ttctttgaac atcaccattc tttcagtaca atagttctct aaactctttt
    21181 atttatttta tttactatga aaccaaccaa taaagcagat tttcaacgtg tgatcaatgc
    21241 agctggctac tctatgaagg ggttaaaagc cgcttatatt aatgaagccg cctttcgcca
    21301 agaaatttgg tgcgctacta ttttattccc tctagggctt attctaggcg aaaccaatat
    21361 tgaaaaagca ttattagtag gcacagtttt acttgtttta gttacagaac tactcaatag
    21421 tgcggttgaa tctgttgttg accgcattgg ggctgatttc cacgagcttt ctggtagagc
    21481 taaagatatt ggctctgcag ctgtatttat ggcgatggtt ttactcgcta taacttggat
    21541 attaattttg ttttgttaac tctatttttc aaccaacact cttactgagg tatttatgcg
    21601 cttaaaaaaa acattacttt cggtagcact acttagtgca acatcagcaa tggcctacga
    21661 gacaggtaaa acatatcgtt ttacggtttt acatactaac gatatacacg gtcacttttg
    21721 gcaaagtgat aaaggcgaat acggtctcgc tgctcaaaaa acattggttg ataatattcg
    21781 caaagaggtc gcagaaaaag gtggttcggt attaatgctg aatgcaggtg atgcgaatac
    21841 aggcgtgccg gagtcagata tgcaaaatgc acgtcctgat attgaaggaa tgaatgcgat
    21901 tggttacgat gcaatggttc taggtaatca cgaatttgat tacccactgc aaattctctc
    21961 tatgcaagaa aaatgggcta aattcccctt tatttcggcc aatgtcatta ataaaaaaac
    22021 ggataaaccc attgtaaaac cttacgtgat gttagaacga ggcggactaa aaattgctgt
    22081 tatcggatta acaaccgaag ataccgcaaa attaggtaat ccagatgtaa cggaaaatgc
    22141 ctttttcaaa aaccctattg aaacagcaaa aaacacatta gctgaaatta atcaaaaaga
    22201 aaaacccgac gtacgtatcg ctttaaccca tatgggttac tattttgacg gtaaacatgg
    22261 tactaatgca ccaggtgatg taacaatggc ccgtacctta gaaaaaggag cgttcgattt
    22321 aatcattggc ggtcataccc acgatactgt ttgtattgat gaaaaaggtc aattcaaagc
    22381 caaatatacg ccgggtgagg aatgtaaacc agacttccaa aacggtactt ggattgtgca
    22441 agccggcgaa tggggcaaat ttgttggacg ggctgatttt gagtttaaag atggaaaagc
    22501 taccttggta aaatatgaat taattccggt caacttaaaa aaaaccatta aaaaagaaga
    22561 cggtactaaa gaataccgac tttaccagcc tgaaatcaaa gccgatgaag caacctatac
    22621 cttattgaaa aaatatcaag atgagggcga taaaaagctt aatattgaag ttggtcgtgt
    22681 gaaagggtta ttagacggca aacgtgagca tattcgcttc caacaaacca atctcggtcg
    22741 tttaattgca caatcgcaaa tggaaagggt aaaagccgat atcgggatta tgaactccgg
    22801 cggtattcgt acctcccttg aagaaggtgt aataacttat aaacatattc tgactgttca
    22861 acctttcggt aatatgattg caacggtgga tttaaaagga caagaattgt tagataccct
    22921 caccactatt gctctgaaag aagttgatac tggcgcttat cctcaatttg ccggcatttc
    22981 aatggtagtc gaccgtacag caaaaactat ttctgatgtt aaaatcggtg gcaaaccttt
    23041 tgataaagag aaaacttata aagtttctct gcctgactat gttgcggctg gtggcgatgg
    23101 ctacccatta ctgaaaaaac accctagcta tgtcaataca ggctttattg atgccgaaat
    23161 gctgaaaaaa ttcttcgaag aaaataaaat tattgaggca gataaatacg atccaaaaaa
    23221 ccagatcatt ttcaaataga gctatagaaa atgaaactca ctctggcagt ctctgctcaa
    23281 aagagctgtg gctgcctgta gattgttttc ttactttcaa gtgttatagg aaatcgataa
    23341 aaaatcccta ccaaattaat tcatcaccat atgatgaaaa ttaaaaaacc tctggcaata
    23401 ctttgccaaa agtctttgac ttttataggg taatatcact gcttattagc ctttaacacg
    23461 ttgttccaaa atcacattca gtgttttttg tttctgtttc aacgcatttt cgggttcggc
    23521 tttaactagt aaggtataaa ttaaatcaag aacgaaaagt tgtgacattt tagtaccgat
    23581 agaatctcct tgcatatgcc cctgtcgatt accattaatt aacacataat tagcctcttc
    23641 cgtgacgggg gaacgtaaat tgtgtgtaat cgcaaccgtt gtcgctttat ttgcacgaga
    23701 aaaacgtagt gatttcacaa tttcttcaga atagcctgaa tgactaatcc ctataactaa
    23761 atccccctct ttcaccaatg ccgcctgcat atacataaaa tgattatttg tgactgcatc
    23821 ggtttgtagc ccaatacgca ttaatttatg ttttgcatct tctgcggtta acccagaaga
    23881 acccactcca aataaaaaga tccgttttgc cttacgtaat tcttcaacaa ctttttccaa
    23941 cacgttaaag tcaagcaaat taatagtctc ttcaataacg ttatctaaac tcactttgag
    24001 cttctcagca atatctttcg atgtatccga ttctgaaaca tccgtatcaa gcaatactct
    24061 attatcttga ttttgcgtag ccaactctat tgcaagctct aatttaaagt cggtataacc
    24121 tttaaaacct aatgtacgac aaaaacgaat aaaagttgct tcaccaacat ctaattgttt
    24181 ggccacttca gataatgaac attggctaag taattccggc tgagataaaa tagcagcagc
    24241 tattttcttc tctgttttgg ttaaactatt ttgtagcgag ctaattgtat taagaatttt
    24301 tccccgacta gacatagtag cctcctaaat caattcaaca ggtactttca ccaccagttt
    24361 tttcaatgtt ttgttgccat tcaccgaatt tccaggctta tgtggttcat aagggaggaa
    24421 aatagcgaac atatttggct tgaggatcaa gttattttta tcatcaatct cagctgttaa
    24481 ttggtagtca tcttcatctc gatattcatc atacttagat aaatctggct ggcttaaccc
    24541 gtattcaatc atttcttcgc cgtctatcaa taattgaata tcgataaatt ttcggtgtaa
    24601 ctctgctttt ttcccctcag ctggcgtagt ttcaaatgac attacattca tgcgaatacc
    24661 attttctaat tcttgccagc ctaattccaa attaactaaa tctaaa
//
LOCUS       DANLRW010000030        23869 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.030, whole genome shotgun sequence.
ACCESSION   DANLRW010000030 DANLRW010000000
VERSION     DANLRW010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23869
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.030"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..895)
                     /locus_tag="PXA71_000958"
     CDS             complement(<1..895)
                     /locus_tag="PXA71_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5105084.1"
                     /translation="MSKIEFEKIPNSIRKPSVLTEYNNKDAVTTLPTNEQEVLIVAPM
                     LNGEAAFTAPQKIFSDVEAENLFGKGSVAHLMVRQAIQNNPLIRLTVVGLKDHEAGIA
                     ATGQVSFTGTVTYAGVVRITIAGTAYEVAAAKGEEAQAIVARLVNVINAASYSPVVAS
                     VESETTLKLTSKAKGEISNEITLATRNTATGLTLEARAFDNGQRNALIAPALASVAGT
                     HYNVIISPFSDDENALALRSHLESVSAPIEDKPAIGVMGWRGTYATGTTLTASLNSER
                     IIVGWYKGATESNAMIAAGLGA"
     gene            complement(895..1074)
                     /locus_tag="PXA71_000959"
     CDS             complement(895..1074)
                     /locus_tag="PXA71_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2635 domain-containing protein"
                     /protein_id="HDL5105085.1"
                     /translation="MLKVKAAKGVRVPVENRPHHYIEQEAVEVENTLYYQRRIADGDL
                     IVVKETKSAKETGGK"
     gene            complement(1075..1716)
                     /locus_tag="PXA71_000960"
     CDS             complement(1075..1716)
                     /locus_tag="PXA71_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1834 family protein"
                     /protein_id="HDL5105086.1"
                     /translation="MISKIERALIERLTLGLGKMVYAVAGYAGEINDEKLDVLRLPAC
                     LVSYGGSAFEAKSMGVRGKRYQATDVFVVLVITRSMRNQTAGRLGGVTSREVGVNQLL
                     GAVKTLLINQTLDGLVHPIQPKRIRTIWNNAEVKKEKLSAYAIEFEISYNECNVLDDG
                     RFPEGVEPNEQVFKQYQGKLDEPQGDLSGFNNRIFDPNNNAETAFRTEFKDDD"
     gene            complement(1713..2138)
                     /locus_tag="PXA71_000961"
     CDS             complement(1713..2138)
                     /locus_tag="PXA71_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1320 domain-containing protein"
                     /protein_id="HDL5105087.1"
                     /translation="MYALVDDFVLRIGEQESIELTDREMVGVVDEATLEVALADSSSQ
                     IDGYLSGRYRLPLKTVPQNLKRICCDLARYHLTSKSLVTMTEEVENRYKLCLKELENI
                     SKGVVSLAVDETNEEESATGENTVQFFNGGNRIWGRDKR"
     gene            complement(2138..2479)
                     /locus_tag="PXA71_000962"
     CDS             complement(2138..2479)
                     /locus_tag="PXA71_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105088.1"
                     /translation="MAKPKKNDNEALNTNENTPLEDKVNEQPEDKTDEQPKPPESETK
                     PDDGALINPIAFEVKLKSIHPQATYGRCGYRFNKETAVEIARKALSDEQIITLANDPY
                     LEFVPVVEGDA"
     gene            complement(2527..3444)
                     /locus_tag="PXA71_000963"
     CDS             complement(2527..3444)
                     /locus_tag="PXA71_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mu-like prophage major head subunit gpT family
                     protein"
                     /protein_id="HDL5105089.1"
                     /translation="MFKKSELLKALDTAFRKEFSAGLKVLEPQWGTVAMKVSSSTATN
                     TYAWLGQFPKMQEWVGDRQIKNMQAQGMTIENKLFESTVAVPRTAIEDDQVGLFTPMV
                     KQAAQSAAELPDDLVFSLLKKGKTTLCYDGQNFFDTDHPVYQNVDGTGTSKTQSNITT
                     GSASGKPAFYVLDDSQAIKPLIWQERTTPEIETKFDPSESDHVFMKDQYLWGVRARGN
                     AGFGFWQLIHRVEDSELNSETLEKVLTAMRTLKGDGDKQLNIRPTTLLVPPSLEFAAR
                     KLLEAELIDGTTNTLKGVLKVVVNPFIAE"
     gene            complement(3444..4514)
                     /locus_tag="PXA71_000964"
     CDS             complement(3444..4514)
                     /locus_tag="PXA71_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage protease"
                     /protein_id="HDL5105090.1"
                     /translation="MFKHKFKLNPIALSFKLNQEANGRIQLFPFGWFEAQDGRGGRWY
                     VGDENGYALADDINNTAIDLMIDYEHQTLYIAENGKGNPAAGWITKAEYISGEGLFAD
                     VKWTPQATQEIKDGVYRYLSPLFLTDGSGMVIKVLNAALTNRPALHNLQEVVAMSSQF
                     AKFLTPEEENPKMKELLIKLFALSANATDEQITEKLTALEKAKGDSPVALSDVYTELA
                     KEKSQVVALSAKVNHPDPAKFVALSDLQAVQTELNGLKQQINDKERDALIQTALSDGR
                     LLPAQKAWAEKLGKQDLVALSDFLKTVTPNPALASTQSGGEDPNKGTEKVALSAAEIA
                     AAKSLGLSEAAYIEKYKTEESK"
     gene            complement(4774..5190)
                     /locus_tag="PXA71_000965"
     CDS             complement(4774..5190)
                     /locus_tag="PXA71_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HDL5105091.1"
                     /translation="MIEIQIHGIDEIIATLNRIAAKTANKTDLMRNIAGKMESAVLTN
                     FDEGGRPKWLGIKHRQGTPLVDTENLMGSITADHNNDSAIVGTNEPYAAIHQFGGMAG
                     RGRKVKIEARPFLQLTSQDRQDILDDVQAYWQKLLD"
     gene            complement(5341..6640)
                     /locus_tag="PXA71_000966"
                     /pseudo
     CDS             complement(5341..6640)
                     /locus_tag="PXA71_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248654.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
     gene            complement(6627..8252)
                     /locus_tag="PXA71_000967"
     CDS             complement(6627..8252)
                     /locus_tag="PXA71_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF935 domain-containing protein"
                     /protein_id="HDL5105092.1"
                     /translation="MSKKKHNKQIKPNLNPIKNQELQTDLAEITATGRVLSDHPSNFI
                     TPAKMKAIFEDTENGDITAQHELFMDIEERDSSIFANIQTRKRAALGVDWAIVAPRNA
                     TPQEEKLRDEVDELFYQLGNLEDLVMDCMDAVGHGFAALEIEWAFNGKLWYPNAFIHR
                     PQSWFKWDKHDNLLLKTRQNTEGEPLREFGWVVHTHKSRSTQAARNNLFRSLAWLYMF
                     KHYSIHDFAEFLELYGMPIRIGKYGAGATPNEKQTLKRALAEIGHNAAGIMPESMSIE
                     LHNAANAGGAAGNNPFLQMVDWCEKSIARLILGQTLTSGADGKSSTNALGNVHNEVRR
                     DLLVSDVKQLGQTFTQQIILPFLQINFGNIDPTRIPSFEFDTKEPADLALFAESLPKL
                     VDIGMPIPVQWAMDKLGIPEAQENEAVLGRSAPPQAVGLSANFPQKMTACECGCGGKV
                     HALSAQTKTGIKEQDALDDLADEAFSVPDFNAQFDPITKKAVAVVMACSSYDEAAEKL
                     AAAYPDLVSEEHDRYLANALFLADLLGAANAES"
     gene            complement(8321..9946)
                     /gene="terL"
                     /locus_tag="PXA71_000968"
     CDS             complement(8321..9946)
                     /gene="terL"
                     /locus_tag="PXA71_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HDL5105093.1"
                     /translation="MKIKEFEKELEELRRQLQQNIEASFEGWDDKPQAISERRQKVLD
                     PVHGFEYFVQAYFPHYVRSEHKSQLHHYLFENLPLSVSDLSKSVRQAIAAPRGEAKST
                     ICTQLFPLWCLVRDLKRYIIIAMDTKEQAYSMLEAIKVEIESNPRLRIDFPEVAQGKV
                     WRAGVIMTAKKQKVEAVGAGQKLRGRRHGAYRPDLVVLDDIENDESVETPAQRNKLHN
                     WVLKAVLKLGAAGEKFDVIYVGTILHYDSVLSRILNTKGWRRVRFKAILRFPGNMALW
                     DEWENIYLSEEGDDDTMSDLFYQQHKAEMDKGALVSWLARPILYLMKIRASDGHSAFD
                     SEYQNDPVSGDDAIFANSIQYWTELPDDLIYFGALDPSMGKAGASRDPSAILVGGYHR
                     ESGKLYVVEAQIKKRLPDLIIEDVIRLHSQYNCHRWFVETVQFQEFLQTELVKRSAQR
                     GKPVPATATKPNSDKMLRIESLQPHIANGLILLHRSQSTLESQLRHFPKADHDDGPDA
                     LEMLWRNALSSSAPIEWESVDDFDGEYRSKWRH"
     gene            complement(9950..10096)
                     /locus_tag="PXA71_000969"
     CDS             complement(9950..10096)
                     /locus_tag="PXA71_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105094.1"
                     /translation="MAKKKQTVVHKHYSFRWIVQLACIFGAIKLMLNGTDGWGWLLLI
                     AACM"
     gene            complement(10096..10596)
                     /locus_tag="PXA71_000970"
     CDS             complement(10096..10596)
                     /locus_tag="PXA71_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1804 family protein"
                     /protein_id="HDL5105095.1"
                     /translation="MAHDVEVQKAVRQAYVFDRLSLEMAAERAGVSFGTARRWKAAAE
                     KNGDNWEKARDVQAMASGGIENIAQGLLAGFLIKYRTLMTELEENTEMPTAAKVEALA
                     ALADSFAKMTASSKKLLPETSAMATAMRAIEMMANIVKTKKPHLLPDFLEMLDELEVQ
                     FKKEFK"
     gene            complement(10604..10858)
                     /locus_tag="PXA71_000971"
     CDS             complement(10604..10858)
                     /locus_tag="PXA71_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105096.1"
                     /translation="MSRKKQKQTDSEKLDLILGGLNELNDKVDKQNEEIERLHREIQA
                     TNRLVNEMARKNRRDAVVAGGLGGGIVAVGFELLRLKFGM"
     gene            complement(10858..11115)
                     /locus_tag="PXA71_000972"
     CDS             complement(10858..11115)
                     /locus_tag="PXA71_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105097.1"
                     /translation="MIDEKLFQMLISFVVAPLVAFVGKVIFDRINRNEQTVKELKAEM
                     ESKYQSKELAHEVNRGIKEKLDDILDSLKEVNQKLDKKADK"
     gene            complement(11108..11263)
                     /locus_tag="PXA71_000973"
     CDS             complement(11108..11263)
                     /locus_tag="PXA71_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105098.1"
                     /translation="MKLIKKLRQRWQQWRFYRRRPDLAELHNVVRAAVAQGNQHPVGR
                     AKRGRYD"
     gene            complement(11278..11637)
                     /locus_tag="PXA71_000974"
     CDS             complement(11278..11637)
                     /locus_tag="PXA71_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2681 domain-containing protein"
                     /protein_id="HDL5105099.1"
                     /translation="MITQQIAGVVGVVSTILAYAFYKSWQLKQERKLTATLKAEKQQQ
                     AVEIQQKNAEVKNAKIQQKHVSETRRIQPSAIDEQLHQHGYFRDDNGLHGVRSDLPEP
                     CGHNGNETPSACTQSDL"
     gene            complement(11634..11879)
                     /locus_tag="PXA71_000975"
     CDS             complement(11634..11879)
                     /locus_tag="PXA71_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2644 domain-containing protein"
                     /protein_id="HDL5105100.1"
                     /translation="MKQFLLDLITNKDGTASTTGFIQFMSWLVLSGILIHAYLYDKPF
                     ISDWWFAYAGICVLGSPATKGVVSALKQKERSREAEE"
     gene            complement(11882..12415)
                     /locus_tag="PXA71_000976"
     CDS             complement(11882..12415)
                     /locus_tag="PXA71_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 108 protein"
                     /protein_id="HDL5105101.1"
                     /translation="MTEPIKNKATIADFNLAFDRLIGHEGGYVNDPKDPGGETNWGIT
                     IHTARANGYTGSMRAMSRADAKTIYLKAFWQRYNCEQFPPELAFQFLDACVNHGSGNA
                     SRMLQRAVGVADDGIIGKVTLAAIERYSVADVGLLFQAERLEFYTKLKHFDRFGRGWI
                     NRMAGNLRYFAKDTVEE"
     gene            complement(12501..12926)
                     /locus_tag="PXA71_000977"
     CDS             complement(12501..12926)
                     /locus_tag="PXA71_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mor transcription activator family protein"
                     /protein_id="HDL5105102.1"
                     /translation="MSEFESVEHYLPETVKEIVGVIGLPATEKLIKAFGGFSFQFSNG
                     KLYFNKLKEVLGQDDAVKLQAYMGACEVYLPRCETALRMLRNQQIYADYCQLTEQGGL
                     SGRLAIMQICPKYSVCDRVAWEAVRYYQRKHTVSQATLF"
     gene            complement(12997..13212)
                     /locus_tag="PXA71_000978"
     CDS             complement(12997..13212)
                     /locus_tag="PXA71_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5105103.1"
                     /translation="MIENPEFGYTPSNLKMLRKHHNLTQTEVANILGVGQRIVMRWET
                     ELSSTAARSDMPYTKWAELLKNLQKNF"
     gene            complement(13231..13623)
                     /locus_tag="PXA71_000979"
     CDS             complement(13231..13623)
                     /locus_tag="PXA71_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105104.1"
                     /translation="MTDYQKLLNALLNDADEDCFAVYGLRATTDVHQVGDELGNSFVW
                     VDGEKTDEELDGICTMGIQNADEAGLLNAIKNLGRDACKKFDVEFKGFQSYCGQNFIL
                     VKGDSARGGEDKGESIIRNPIVVAVFNS"
     gene            complement(13749..14096)
                     /locus_tag="PXA71_000980"
     CDS             complement(13749..14096)
                     /locus_tag="PXA71_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105105.1"
                     /translation="MKELLLTTLCLLSLPAIAMTEKAEQETANALVSGDYQQLRNVAY
                     GMETGSFGHDHNPIAACALRRVILLVNSDKVDMTDFNNEAIACRKIEVTDNQQAWETA
                     FTIAKSISATKKK"
     gene            complement(14185..14610)
                     /locus_tag="PXA71_000981"
     CDS             complement(14185..14610)
                     /locus_tag="PXA71_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulatory protein GemA"
                     /protein_id="HDL5105106.1"
                     /translation="MQPQTRKQMIQKIHIGKNELKLDDNAYKMLLLEAVDKPSCSMMT
                     DSELMTVLQTMKAKGFVVKSKKYGKRPTASKTAPHRQGLINKIGALLYQSQKPWDYAH
                     AIAKRSFGIERVQWLTDDQLHKLVQILASYNHRHGMSVK"
     gene            complement(14594..15148)
                     /locus_tag="PXA71_000982"
     CDS             complement(14594..15148)
                     /locus_tag="PXA71_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105107.1"
                     /translation="MKLCKCPICHSDISFEALIEDDAGRELLNTIVNIGGNCGRAVVA
                     YLGLFKPQKNSLANSRALKIVQSLLELYPPSNVLEKALMDTVEQVRRNRRETGRCEPL
                     ANHNYLKKVYESVKPQFAVVRSEAKAVSSLEQQQRQADQKKHDAVMYVERMKQMGQLE
                     AVKNTESYQIWLKWQEEKQNATAN"
     gene            complement(15148..15318)
                     /locus_tag="PXA71_000983"
     CDS             complement(15148..15318)
                     /locus_tag="PXA71_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105108.1"
                     /translation="MEYQKIPEYRLCKKKSGEIVLQQLVICELTPATWHNPYPDSRTY
                     WVDLETIEEGTE"
     gene            complement(15389..15964)
                     /locus_tag="PXA71_000984"
     CDS             complement(15389..15964)
                     /locus_tag="PXA71_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5420 family protein"
                     /protein_id="HDL5105109.1"
                     /translation="MKFRFFKGDITQEPLKSIYADYQVSKEERKDKLNAILEKYPFND
                     GLISRSGWFHRIVIGIACKATNISQVLDVKGFKVGKFNDEFYLVKPDKRYEKGKELAE
                     DFKAINEIYEKHRDFSPYILKRLNMLYFVSDFSYSPTSGRSYLAVAGICENTLLVEMP
                     MPIDKNDEPFPEIAEGLVEIKESEFLAIQGK"
     gene            complement(15987..16169)
                     /locus_tag="PXA71_000985"
     CDS             complement(15987..16169)
                     /locus_tag="PXA71_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105110.1"
                     /translation="MTEQEKNELNSQLNEALMQIIQAQKYLKQSDFIRSGVYLGTVQD
                     LLPKVHLKLLTANRKH"
     gene            complement(16236..16382)
                     /locus_tag="PXA71_000986"
     CDS             complement(16236..16382)
                     /locus_tag="PXA71_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HDL5105111.1"
                     /translation="MKTEQKATEFDRYKHYAEKAAEAERKGNYAEAQDHWKVAKLSAK
                     KTAN"
     gene            complement(16493..16699)
                     /locus_tag="PXA71_000987"
     CDS             complement(16493..16699)
                     /locus_tag="PXA71_000987"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105112.1"
                     /translation="MFITFNVNYTDKPVVVNTDKVCSIENINGNVTVHFCDNKKLIMM
                     DFDDKEYASLLNHLHILNQLKRKS"
     gene            complement(16701..17318)
                     /locus_tag="PXA71_000988"
     CDS             complement(16701..17318)
                     /locus_tag="PXA71_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3164 family protein"
                     /protein_id="HDL5105113.1"
                     /translation="MSKVTIGNEIYWKDADGNLKPEALVKEIDKERDELVRQFVSKAQ
                     ALSKALGDFKQSVFDDVGAFVSLSADKYGVKIGGAKGNITLFTYDGEYKLQLAVQENI
                     RFDERIHAAKALIDECLHDWSEGAKPELKALIDNAFEVDKEGNLSTAKILSLRRVEID
                     DARWNQAMTAISDSVQVIGSKGYIRFYKRDENGKYQPISLDMAGV"
     gene            complement(17331..17522)
                     /locus_tag="PXA71_000989"
     CDS             complement(17331..17522)
                     /locus_tag="PXA71_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105114.1"
                     /translation="MKKRRMIYALYVGEENVADGTAEELAERLGVEAKTVRFMSSPAH
                     NKRVKYNGKAIRTVKVGLE"
     gene            complement(17525..17845)
                     /locus_tag="PXA71_000990"
     CDS             complement(17525..17845)
                     /locus_tag="PXA71_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105115.1"
                     /translation="MQKVYSEKAGEMMNPLNAFIHDSLVKLEIATLECEAMELEVERV
                     EFEAKSPPRLVLRDNCKTQDLVKNGLASLFGMKTKGGRRYDSYQMQVRGVKCVWESER
                     VTKV"
     gene            complement(17856..18737)
                     /locus_tag="PXA71_000991"
     CDS             complement(17856..18737)
                     /locus_tag="PXA71_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5105116.1"
                     /translation="MKNQELRALMDSKGYQQKQVAQLLGVSVATVSLYLKGDYNGNVA
                     EMDRKVDELIERDKAKVVEAKYNAAFVPTLAARRGMEVMQFAHIEGEINVIFGAAGLG
                     KTQMLKEYERRNSSATLIEVDPSCTPKVLLRKIAEAVGANARGVNNELLESIVNKLKG
                     SERLLMIDEAELLSTRSLEFIRRIHDLTSVGVVLAGMPRLLVNLKGKNNELAQLYSRV
                     GFACDLGNALSEEDLGLLAESALGTNEFNAPLIKACHGNARRLSKLMRGVVRSSEINQ
                     TPISKDLVEQYSKMLIS"
     gene            complement(18741..20678)
                     /locus_tag="PXA71_000992"
     CDS             complement(18741..20678)
                     /locus_tag="PXA71_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5105117.1"
                     /translation="MKDWFSAKELAGISGLSKYPTNVTRQAKKEQWATRPLKGVKGGG
                     FEYHINSLPTEVQTEIRSRFMSAVVEAKPKKLPVVRAEVDVGNLTTKQREIADARMAL
                     VAYVLELEGSMSRIKAITYLCNLAKQGEMPPHLAELVAVANAKKTAKRTLSVRTLNGW
                     VVDYCKAENAEQRLKLLAPQVRQETKPEEIWWLSAFLGVYRQKNGICLTEAYREFEVE
                     WAYQYADNPLLLAQCPSLSQVQRAMNKLPLYVKEYGRRTGSHYKQLLSYVKRDWSVLR
                     ANDVWIGDGHSLKLKVAHPIHGKPFTPELTMIVDGAGRKVVGWSLALSENAFAVADAL
                     RHAISLHGVPAIYYSDNGGGEKNKFLDAEITGMLPRLGIRHETGIAGNPQGRGIIERL
                     NKTIGMTIARQFETGYATGADPETVRKTLYAVNSLANAKGELTPLQRKAQGKLPTWQQ
                     LIEVIQSVIDWYNNEHIHSEIRTTPARKYQQMLHAEDVVMLSPIELRDMSRPEFIRKP
                     DRGWVSWNNNHYFNLKLLDFDREEVVIGIDIHNAESVQVRTKDGRFICEAIWNGNTRE
                     AFPVAMVEQQRKERHKRRANLKQQQLDEINAELNPVLTIEQKNDFSLLATARKPKKEV
                     EPIFLTRAEKEDYEKKLAVGG"
     gene            complement(20693..20920)
                     /locus_tag="PXA71_000993"
     CDS             complement(20693..20920)
                     /locus_tag="PXA71_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5105118.1"
                     /translation="MNKKKRAQDMHRADIRAELMKKGITFSQLGIENGLSKTTVRNAL
                     DKPYKNGEEIIAKALGKTPAEIWPSRYPDVA"
     gene            21130..21858
                     /locus_tag="PXA71_000994"
     CDS             21130..21858
                     /locus_tag="PXA71_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5105119.1"
                     /translation="MKSFDKVWFSAKELEELDLPDLPKQATNITRKALKELWIKRDAV
                     GVKGGGNEYHITSLPRKAQEALGFKSGINAIKDSIVREITPEEQNKGSELSGTVLNNI
                     ISMIDSFASIKVSAGFGSFNEGVTKPDGQEPYADSLLHTLGVNAKKCAVFWASGDSMY
                     PTIDNGDQLLVDLSRNEIRGDNNIYIVQNGDSVWVKRVKLLWDGVELISDNREEYELI
                     KITADQAQNLQIIGQVVHIGHSLV"
     gene            complement(22066..22851)
                     /locus_tag="PXA71_000995"
                     /pseudo
     CDS             complement(22066..22851)
                     /locus_tag="PXA71_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596405.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
     gene            complement(22917..23732)
                     /locus_tag="PXA71_000996"
     CDS             complement(22917..23732)
                     /locus_tag="PXA71_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDL5105120.1"
                     /translation="MTLPFRAIISDLDGTLLNANHKIGDFTIDTLEQLSKKGVDIFFA
                     TGRNHPDVSQIIGKVNVKNAMLVTSNGARANNLEGKKILNHYLPEDLAFELMNIEFDD
                     QNVCLNSYQGDEWFINKEIAELKKFHQDSGFSYQVVNFAHHHGRNTEKVFFIGKTAEA
                     LVPIEHYIRDTYGDRVQMTYSALLCLEVMAKGVCKANALAELVKLRGYTLADCIAFGD
                     GMNDVEMLSLAGKGCLMGNADPRLKAVLPNNEVIGFNKDEAVASYLRATFGIV"
BASE COUNT         6283 a         5792 c         4454 g         7340 t
ORIGIN      
        1 ccgcaccaag ccctgccgca atcattgcat ttgattcggt tgctccctta taccagccta
       61 caataattcg ctcactgtta aggcttgcgg ttaaggttgt gccggtggca taagtgccac
      121 gccagcccat tacaccaata gccggtttat cttcaatcgg ggcagaaacc gattctaaat
      181 ggctacgcaa ggcaagggca ttttcatcat ctgaaaacgg cgaaataatc acgttataat
      241 gcgtaccggc aacactcgcc aacgccggag caattagggc attacgctga ccgttatcaa
      301 acgcacgagc ctcaagggtt aaacctgttg ctgtattgcg tgttgcaagc gtgatttcat
      361 tgctgatttc gccttttgct tttgaggtca gtttaagtgt cgtttcactt tccacacttg
      421 ccaccacagg gctataactc gccgcattaa tcacattaac taaacgagcc acaatcgcct
      481 gtgcttcttc gccttttgcg gctgcaactt cgtaagctgt gccggcaatc gtaatacgca
      541 ccacaccggc ataagttact gtgccggtaa aactaacttg ccctgttgct gcaatacctg
      601 cctcgtggtc ttttaagccc accaccgtta aacggattag cggattattt tggattgctt
      661 ggcgaaccat taaatgagct accgagcctt taccaaataa attttccgcc tccacatcgc
      721 taaaaatctt ttgcggagca gtaaaagcag cctcaccgtt tagcattggt gcaacaatta
      781 gcacctcttg ctcattggtc ggcaaggtgg ttactgcatc tttgttgttg tattcggtca
      841 gcacacttgg tttgcgaata ctgttcggga ttttctcaaa ttcaattttt gacattattt
      901 gccccctgtt tctttagcgg atttggtttc tttgacgaca atcaaatcgc catccgcaat
      961 gcggcgttga tagtaaaggg tgttttcaac ctctactgcc tcttgttcaa tatagtgatg
     1021 cggtcggttt tctaccggca cacgcacccc tttagcggct ttcactttta acatctaatc
     1081 atcatcctta aattctgttc taaatgccgt ttcggcattg ttattcgggt caaaaatccg
     1141 attattaaag cccgataaat cgccttgcgg ttcatctagc ttgccttgat actgcttaaa
     1201 gacttgctca ttcggctcaa ccccttcggg gaatctacca tcatcaagca cattgcactc
     1261 gttgtagctg atttcaaact caatagcata agcagagagt ttctctttct tcacttccgc
     1321 attattccaa atcgtgcgga ttcgcttagg ctggataggg tggactaaac cgtctaaagt
     1381 ctggttaatc aataaggttt tcaccgctcc cagcaactga ttaaccccca cctcacgact
     1441 tgttacccca cctaaacgcc cagcagtctg atttcgcatt gagcgagtaa taaccaacac
     1501 cacaaacaca tcagtggctt gatagcgttt acctcttact cccattgatt tcgcctcgaa
     1561 cgccgagcca ccataagaga caagacaagc aggcaaacgg agaacatcta acttctcatc
     1621 gttaatttcc ccggcatacc cagcaacggc atacaccatt ttgcctaagc ccagcgttaa
     1681 acgctcaatc aaagcacgct caattttgct aatcatcgct tatcacgccc ccaaatacgg
     1741 ttgcccccgt taaaaaactg cactgtattt tcgccagtag ccgattcttc ctcattggtt
     1801 tcatcaaccg ctaacgacac tacgccctta gagatgtttt ccagctcttt taagcaaagt
     1861 ttgtagcggt tttccacctc ttcggtcatc gttactaatg atttgctggt taaatgataa
     1921 cgagccaaat cacagcaaat acgctttaaa ttttgcggta cagtctttaa tggcagacgg
     1981 taacgcccac ttaaatagcc atcaatttgg ctggaagagt ccgctaaagc tacttcaaga
     2041 gtcgcttcat caaccacgcc taccatttca cggtcggtta gctcaatgga ttcctgttcg
     2101 ccaattcgca aaacgaaatc atcaaccaac gcatacatta cgcatcgccc tcaacaacag
     2161 gtacaaactc caaataaggg tcgttggcta aggtaataat ttgttcatca ctcaaggctt
     2221 tacgagcaat ttctaccgcc gtttctttat taaaacggta gccacaacgc ccataggtgg
     2281 cttgtgggtg gatagatttg agcttaactt caaaagcaat aggatttatc aaagcaccgt
     2341 catcaggctt agtttcactt tcaggcggtt taggttgttc atccgtttta tcttcaggct
     2401 gttcattcac cttatcttca agcggtgtgt tttcgtttgt gttcaaagct tcattgtcat
     2461 ttttctttgg ttttgccatt ttgctaccct ctcaaaatgg gcgtattgct acgcccaaca
     2521 ttaaacttat tcagcaataa atggattcac taccactttt aacacacctt ttaaggtgtt
     2581 ggttgtgccg tcaattaatt ctgcttcgag taatttgcgt gcagcaaact caagcgaagg
     2641 tggcacaagc aaagtggtcg ggcgaatatt taactgctta tcgccatcgc cttttaaggt
     2701 gcgcattgca gttaatactt tttcaagggt ttcactattt aactcactat cttcaacacg
     2761 gtgaattaac tgccagaaac caaaaccggc attaccacga gcacgcacac cccataaata
     2821 ttggtctttc ataaagacgt ggtctgactc acttggatca aacttcgttt caatttcagg
     2881 tgtagtacgt tcttgccaaa ttaacggctt aatggcttgg ctatcatcta gcacatagaa
     2941 cgcaggctta ccgctggcag agcctgtggt gatattactt tgtgttttac ttgtgccagt
     3001 tccatcaaca ttctgataaa cagggtgatc ggtatcaaag aagttctgcc cgtcatagca
     3061 aagggttgtc ttaccttttt tcaacaaact aaataccaaa tcatcaggta attcagccgc
     3121 actttgtgcc gcttgtttca ccattggggt aaataagccc acttggtcat cttcaatggc
     3181 agtacgaggc acagcaacgg ttgattcaaa taatttattc tcaatcgtca ttccttgtgc
     3241 ttgcatattt ttaatttgac ggtcgcccac ccactcttgc attttcggga attgtcccag
     3301 ccaagcatag gtattagtag cggtgctgga gcttaccttc attgcaaccg ttccccattg
     3361 tggttcaagc acttttaaac cagcactaaa ttctttacga aatgcagtat caagtgcttt
     3421 taataattca gattttttaa acattacttg gattcctctg ttttatattt ttcaatgtaa
     3481 gctgcttcgc ttaaaccaag cgattttgct gctgcaattt ccgcagcaga taacgccact
     3541 ttctccgtac ctttgttcgg gtcttcaccc cccgactgcg tacttgctaa agcggggtta
     3601 ggtgttaccg ttttcaaaaa gtcggataaa gccactaaat cttgcttacc gagcttttcc
     3661 gcccacgctt tttgagccgg caataaccga ccgtcagaaa gagcggtttg aattaacgca
     3721 tcacgctctt tatcgttgat ttgctgtttt aagccgttca gctcggtttg cactgcttgc
     3781 aagtcgctta acgccacaaa cttcgccggg tcagggtgat tcactttggc agagagtgca
     3841 accacttggc ttttctcttt tgccagctcg gtataaacat cacttaacgc caccgggctg
     3901 tcgcctttgg ctttctcaag tgcggtcagt ttttcggtaa tctgctcatc ggtcgcattt
     3961 gccgacaatg caaataattt aattaagagt tctttcattt ttggattttc ctcttcgggg
     4021 gttaaaaatt tggcaaattg gctagacatc gcaaccacct cttgcagatt atgcaaggca
     4081 gggcggttag ttaaggcggc attaagtacc ttaattacca ttccgctgcc gtctgtcaaa
     4141 aacagtggcg agagatagcg ataaacgccg tctttaatct cttgggtcgc ttgtggtgtc
     4201 cacttaacat ccgcaaacaa gccttcgccc gagatatatt ccgccttggt aatccaaccc
     4261 gcagcagggt tgcctttgcc gttctcggcg atgtacaggg tctgatgctc ataatcaatc
     4321 atcagatcaa tcgcagtgtt gttaatatca tcggctaacg catagccatt ctcgtcacct
     4381 acataccaac gtcctccacg cccgtcttga gcctcaaacc aaccaaaagg gaaaagttga
     4441 atacgtccat ttgcctcttg gttgagttta aaactcaatg caatggggtt tagtttgaat
     4501 ttatgcttaa acacaaaaac acctcaaaac aaattaatga ggctaaagaa tagaagattg
     4561 agaaaaaaga gtaacgggga gcaacttcca caagttgcaa attttcagaa aaaaaacaac
     4621 cgcttgtatt cagcgaggaa tgtaacccat tttaaaacgc tttaaatccg ttttaaaaaa
     4681 ttttaaaaaa gttggaatga taaatcacca taaaaaaaac aaaaacgcca cagagagcga
     4741 tttaggggct atctgtggcg attatcttat cgcttaatcc agcagttttt gccagtaggc
     4801 ttgcacatcg tccaaaatat cttgcctgtc ttgcgaggtt aattgtaaaa aaggtcgggc
     4861 ttcaattttt actttacgcc cacgcccagc cataccaccg aattgatgaa tagcagcata
     4921 aggctcattt gtgccaacaa tcgccgaatc attattatga tcagcagtaa tgctgcccat
     4981 taaattttcc gtatcaacta acggcgtgcc ttgccgatgt tttataccca gccatttcgg
     5041 gcgaccgccc tcatcaaaat tggtcagtac cgccgattcc attttgccgg caatattccg
     5101 catcaagtct gttttatttg ccgttttagc agcaatacgg ttaagcgtgg caataatttc
     5161 atcaatgccg tggatttgga tttcaatcat ttttaacctt gcaagttgat ttttaaaata
     5221 aacaggggta tattcctttt acggttatta gaaaagcggt gataatctcc ctgccgcagc
     5281 ctatttgaga tggcaagtcc tgctcaaatg accgagagcg tgtgtaagtg accgggagcc
     5341 ttacctaata accgtatttt tcaacagcag cttatccaat tctttttgtc caatctccct
     5401 tgttgatacc agaaataatt caccaaactc ttctaagtat ttcaccacaa caagaatacg
     5461 ataatgctca aagtttcgta taaagctgaa atttttgcct tcttgcaaaa tatgattagg
     5521 ctgaaaaatt acatcaggaa tatttgcata cacatcaaac ccaaaatcct gcccctcacg
     5581 gctataaaac tgcttaatca gtgtgtcatc cgaaagccat accgtgccga ctttactgtc
     5641 gattaagcgt tgtgtttcct cacttaaccg accagcagca aatttaaagt tttgattaag
     5701 ggcatttcgc actttaacca tctcatcagg cgagagtttt ttcgccccat ctttggcaag
     5761 tgccacagcc tcttctaact tgttaaacgc ctgcttaaat tcaccaccgc tcatttctgc
     5821 tttggtaaat tggtaagcca gcttttcagg gtataaatcc aaattcggct tataggttaa
     5881 acgccccaca ttataatcaa aacctttatc agccaatcgc accgtaccat cagccaattt
     5941 aaagccaatg gtttcctctt ggttgcctaa cttatctttc ggtcgttttg ccttcactaa
     6001 aaacggctcg ctactgccga cttcgtcaat ccctttacgc tttaaatccc gctcacttaa
     6061 cgcaatcacg gtacaacggc aattaaagcc gttcggcgga taaaaagtcg cccaaaacgg
     6121 atcgtcataa cgataaatct taccctgtaa tgcttggtga gcagggcggg tgcgttggtc
     6181 gcctaccgcc gaatattgcc aataagggcg attatccaca ttatccatat accgctgata
     6241 acgagccgca gaataagcct gttgcatatt ggtacgataa atcgtattca agcggcgagg
     6301 cgtgccgaaa tgctcgccgg ttttcgggtc ggcaagcagt ttgccatcaa tgccacgact
     6361 aatcgtcgtg tccatacacc cagcctttcc gttcaaattc tgccgtaagc gttttcttcc
     6421 attcattaaa ggatttcccc tcacgccgtg ctttttccat cgactcataa atatcacggg
     6481 tcatttcaag gctagtgagc ttgctaatgg tggcggctcg ccccaatgca gaatcaaata
     6541 attcctgctt aaacacttta ttcgcaagca acttcttctg ccgtaaaaac tcaatcgcct
     6601 gcttaggctc tagtccaatg gcaaaattaa ctttctgcat tcgcagcccc taataaatcc
     6661 gccaaaaata acgcattcgc taaatagcgg tcgtgttctt cactcactaa atcagggtag
     6721 gctgccgcca atttttctgc tgcctcatca taagagctac acgccattac caccgccacc
     6781 gcctttttcg tgatggggtc aaattgggcg ttaaaatccg gcacggaaaa agcctcgtct
     6841 gccaaatcat ctaaggcatc ttgctcttta atgcccgttt tggtttgggc cgacaaagcg
     6901 tgaaccttgc ccccacaacc gcattcgcaa gcggtcattt tttgcggaaa atttgcggat
     6961 aaccccaccg cttgtggcgg ggcagaacgc cctaacaccg cttcattttc ttgagcttcg
     7021 ggaataccga gtttatccat cgcccactgc accggaatcg gcattccaat atccaccaat
     7081 ttcggcaagc tctcggcaaa taacgccaag tcggcaggct ctttggtatc aaactcaaaa
     7141 ctcggaatgc gggttgggtc gatattgcca aaattaattt gcagaaacgg cagaataatt
     7201 tgttgggtaa acgtctgccc cagctgtttc acgtccgaca ccaacaaatc acgccgcact
     7261 tcgttatgca cattgccgag tgcattggta gagcttttgc cgtctgcacc gctggttaag
     7321 gtttgcccca aaatcaagcg ggcgatagac ttctcacacc aatccaccat ttgcaaaaac
     7381 ggattattgc cggctgcacc gcctgcatta gcggcgttat gcaactcaat actcatcgac
     7441 tccggcataa ttccggcagc gttgtgtccg atttccgcta atgcacgttt aagcgtttgt
     7501 ttttcgtttg gtgttgcccc tgcaccgtat ttaccaatgc ggataggcat accatacagc
     7561 tccaaaaact cggcaaagtc gtggatagag tagtgtttaa acatatacag ccaagccagc
     7621 gagcggaata aattattgcg tgccgcctgt gtggagcggg atttatgcgt atgcaccacc
     7681 cagccaaatt ctcgtaatgg ctcaccttcg gtattttgtc gggttttcag caacagattg
     7741 tcgtgcttat cccacttaaa ccacgattga ggacggtgga taaaggcgtt cggataccac
     7801 aatttaccgt taaacgccca ttcaatttcg agggcagcaa aaccgtgtcc cacagcgtcc
     7861 atacagtcca tcaccaaatc ttcaaggttg ccgagctgat aaaataactc atcaacctca
     7921 tcacgcagtt tttcttcctg cggtgtggca ttgcgagggg caacaatcgc ccaatctacg
     7981 cctaatgcgg cacgcttacg ggtttggata ttggcaaaaa tagagctgtc ccgctcctca
     8041 atatccataa ataattcgtg ttgagcggta atatcgccat tctccgtatc ttcaaaaatc
     8101 gctttcattt tagcaggcgt aataaaattg ctcggatggt cggagagtac ccgacctgta
     8161 gcggtaattt cggctaaatc cgtctgcaat tcttgatttt taatcgggtt taaattcggt
     8221 ttaatctgct tgttatgctt ctttttgctc ataaattttc cttttcagag cttagttacg
     8281 ctcaatatag tccccctctt tagcaaagag gggagttaca ttaatgccgc cacttactgc
     8341 gatactcacc gtcaaaatca tctacactct cccactcaat cggggcagag ctgctgagtg
     8401 catttcgcca taacatttcc aacgcatccg gaccatcatc gtgatcggct ttcggaaaat
     8461 ggcgaagctg gctttcaagc gtagattgcg agcggtgcaa caaaatcaaa ccgttggcaa
     8521 tatgcggttg caagctctca atccgtaaca tcttgtcact gttcggcttg gttgccgttg
     8581 ccggcaccgg cttaccacgc tgggcagaac gcttgaccag ttccgtctgc aaaaactcct
     8641 gaaattgcac cgtctccaca aaccagcggt gacagttata ttgcgaatgc agtctaatca
     8701 cgtcctcaat aattaaatcc ggcaatcgtt ttttgatttg tgcctcaaca acatagagct
     8761 tgccactctc acgatgatag ccaccgacca aaattgcaga tgggtcacgg cttgccccag
     8821 ctttccccat tgaggggtct aacgccccga aataaatcag gtcatcaggc agttccgtcc
     8881 aatactggat actgttggca aaaatcgcat catcacccga gacagggtca ttttgatact
     8941 cggagtcaaa tgctgagtgc ccatcactag cacggatttt catcaagtag aggatagggc
     9001 gagctaacca agagactaac gctcctttat ccatttctgc tttatgctgt tgataaaaga
     9061 gatcagacat agtgtcatcg tccccttctt ccgagaggta tatattttcc cattcgtccc
     9121 ataacgccat attgccggga aagcgtaaaa tggctttaaa acgaactcgc cgccaacctt
     9181 ttgtatttaa aatacggcta agcacactgt cataatgtag aattgtgccg acatagataa
     9241 catcaaactt ttcacctgca gcaccaagtt ttaaaactgc ttttaaaacc cagttatgca
     9301 atttattacg ctgtgcaggt gtttctacgc tttcatcatt ctcaatatca tcaagtacta
     9361 ctaaatccgg acgataagct ccgtggcgac gaccacgcaa tttttgccca gcccccacag
     9421 cttcaacttt ttgtttttta gccgtcataa tgacacctgc acgccaaacc ttgccttgtg
     9481 caacctcggg gaaatcaatt cttaaacgag ggttagattc aatttccact ttaatagctt
     9541 caagcatact gtatgcctgt tctttggtgt ccatcgcaat aatgatgtat ctttttaaat
     9601 cacggactaa acaccacagc gggaataatt gcgtacaaat cgttgatttt gcctcgccac
     9661 gaggggctgc aatcgcttgg cggactgact tagaaagatc acttaccgaa agcggtaaat
     9721 tctcaaagag ataatgatgc aactgtgatt tatgttcaga ccgcacatag tgtggaaaat
     9781 aagcctgcac aaaatactca aagccgtgaa cagggtctaa aaccttttga cggcgttcgc
     9841 taatggcttg tggtttatcg tcccaaccct caaaactcgc ttcgatattt tgttgtaact
     9901 gtcgccgtaa ttcttccagt tctttttcaa attctttgat tttcataaat tacatacaag
     9961 ctgcgataag caacaaccag ccccaaccgt ctgtaccgtt gagcattagt tttattgctc
    10021 cgaaaataca agcaagttgg acaatccaac ggaaagagta atgcttatgc actacagttt
    10081 gttttttctt agccattact taaactcctt tttgaattgc acttctagct catctaacat
    10141 ttctaaaaag tcaggcaata aatgcggttt cttggttttg acgatattcg ccatcatctc
    10201 aatcgcacgc atagcggttg ccattgcact tgtttcaggc aatagtttct tgctcgatgc
    10261 cgtcatcttc gcaaacgaat cagccagagc agctaatgcc tcaaccttag ctgcggttgg
    10321 catttcggtg ttttcctcaa gctccgtcat caacgtgcgg tacttaatta aaaaaccggc
    10381 taacaagcct tgagcgatat tctcaatacc accgcttgcc atcgcttgca catcacgagc
    10441 tttttcccag ttatcaccgt tcttttcagc agccgctttc caacgccgtg ccgtgccgaa
    10501 tgatacccct gcacgttctg ctgccatttc gaggcttaaa cggtcaaaca cataggcttg
    10561 ccgaaccgct ttttgtactt caacatcgtg tgccatacgc cctctacatt ccaaatttca
    10621 ggcgtaacaa ctcaaaaccc acagcaacaa tgccaccacc caagccaccg gcaactacag
    10681 catcacggcg gtttttacgt gccatttcat tcactaaacg attagtcgct tggatttcac
    10741 ggtgtaagcg ttcgatttct tcgttttgtt tatccacctt atcgtttagc tcatttaatc
    10801 cacctaaaat caggtctaat ttttccgaat cggtttgctt ttgtttttta cggctcatta
    10861 cttatccgcc tttttatcaa gtttttggtt tacttctttg agcgagtcta aaatatcgtc
    10921 cagcttttcc ttaatccctc tattcacttc gtgggcaagc tctttggatt gatatttgct
    10981 ctccatttct gcttttagct cttttaccgt ttgctcattg cggttgatac gatcaaatat
    11041 gaccttgcct acaaacgcca ctaacggagc aactacaaaa gagatcagca tctgaaacag
    11101 tttttcatca atcataacgc ccccttttgg ctcgcccgac cgggtgttga ttaccttgtg
    11161 ccaccgccgc acgcaccacg ttatgcaatt ctgcaaggtc aggacggcgg cgataaaaac
    11221 gccattgttg ccaacgctgt ctgagttttt taattaactt cattctggca aacttcctca
    11281 taggtcagat tgtgtgcaag cacttggcgt ttcgtttcca ttgtgtccgc acggctcggg
    11341 taaatcagac cgaacgccgt gcaacccgtt gtcgtcacgg aagtaaccgt gttggtgcaa
    11401 ctgctcatca atggcactag gctgaatacg gcgagtttca ctaacgtgtt tttgctgaat
    11461 tttggcattt ttaacctctg catttttttg ttgaatttcg accgcttgtt gctgcttttc
    11521 cgcctttaat gtagcggtaa gtttccgctc ctgctttaat tgccagcttt tataaaaggc
    11581 ataggctaaa attgtgctta ctacaccaac cacacctgca atttgttgag taatcattct
    11641 tcagcctccc ttgagcgttc tttttgtttt aacgcactta ccaccccttt tgtggctggg
    11701 ctacccaata cacaaatacc agcataagca aaccaccagt cggaaataaa cggcttatcg
    11761 taaaggtagg cgtgaattaa aatgcccgat aacactaacc agctcataaa ctgaataaag
    11821 ccagtggtgc tggctgtgcc gtctttattg gtaattaaat caagtaaaaa ttgcttcacg
    11881 attattcctc caccgtgtct ttggcaaaat aacgcaaatt acccgccatt cggttaatcc
    11941 aacctctacc aaaacggtca aagtgtttga gtttggtgta aaactcaagg cgttctgcct
    12001 gaaataacaa gcccacatcc gcaaccgaat aacgctcaat cgcagccaaa gtcactttac
    12061 cgataatgcc gtcatcagcc acacctaccg ctcgctgtaa cattcggcta gcattgcccg
    12121 aaccgtggtt tacacacgca tctaaaaact gaaaagccaa ctcaggcggg aactgctcac
    12181 agttataacg ttgccaaaag gctttgaggt aaatagtttt cgcatccgca cggctcattg
    12241 cacgcataga gccggtatag ccattcgcac gggcagtatg gatagtgata ccccaattcg
    12301 tttcgccacc ggggtctttc gggtcgttca cataaccgcc ctcgtgtccg ataagacggt
    12361 caaatgcaag attaaagtca gcaatagttg ccttgttttt gataggttca gtcataaaaa
    12421 aagcctcttt aaattcaatg atgatttaaa gagactttaa tgatttagag caacggggag
    12481 caggcgaaag gattccacac ttaaaacaag gtagcttgcg aaacggtatg cttacgctga
    12541 taatatcgta ctgcctccca cgcaacacga tcacacacgc tgtatttagg gcaaatttgc
    12601 ataatcgcaa gcctgccact tagccctcct tgctcggtta attgacaata atcggcataa
    12661 atctgctgat tacgcaacat tcttaatgcg gtttcacaac gtggcaaata gacctcgcaa
    12721 gctcccatat aagcctgtaa tttcactgca tcatcttgcc ctaatacctc tttgagctta
    12781 ttaaaataga gttttccgtt agaaaattgg aatgaaaagc caccaaaggc tttgattagc
    12841 ttttcagttg ccggcaaacc aatcacgccc acaatttctt tcaccgtttc cggcaaataa
    12901 tgttcgacac tttcaaattc agacataaaa aatccccttg aataatttcc acgaaagcca
    12961 ttatccaagg gggttattca aatctgtaat acttacttaa aaattttttt gcaaattttt
    13021 taaaagctca gcccattttg tgtacggcat atctgatcta gctgcggttg atgacagttc
    13081 tgtctcccac cgcattacta ttctttgccc gacccctaat atgttagcta cctctgtttg
    13141 tgtgaggtta tggtgctttc ttagcatttt taagttgctt ggtgtgtatc caaactctgg
    13201 gttttcaatc attcacctcc ctccattaaa ctagctatta aatacagcaa caacgatagg
    13261 gtttctaata atgctctcgc ctttatcttc tccgcctctt gcactatcgc ctttaactag
    13321 gataaagttt tgcccacagt atgactggaa acctttaaat tcaacatcaa attttttgca
    13381 agcatcacga cctagatttt taatagcatt taacaaacct gcttcatctg cattttggat
    13441 tcccattgta caaatgccgt ctaattcttc atctgttttt tcaccatcga cccaaacaaa
    13501 agaatttcct aattcatcgc caacttgatg cacatctgta gttgctctta aaccataaac
    13561 agcgaagcag tcttcatcgg catcgtttag taaagcattt aaaagttttt ggtaatctgt
    13621 cattttaatt tctcctgttt ggctatgggt gcattatagt aatataatta cctattgcaa
    13681 gtgatttttc gtttttttct taaatttttt tatgtaaata aaaaagaccg cttgaaagcg
    13741 gtctaaattt attttttctt ggttgcagaa atggattttg caatggtaaa ggcagtttcc
    13801 caagcctgtt gattatctgt aacctcaatt ttacggcaag caatcgcctc gttgttaaag
    13861 tcagtcatat caaccttgtc cgaattaaca agcaaaataa cacggcgtaa agcacaagca
    13921 gcaataggat tgtgatcgtg cccaaacgaa ccagtttcca ttccgtaagc tacatttctt
    13981 aactgttgat aatcaccact tacaagagca tttgctgttt cttgttcagc tttttctgtc
    14041 attgctattg ctggtaacga caataagcat aaggttgtta atagcagttc tttcatttta
    14101 aataccttta aaagttgatt aaaaaacacc taaaatctac cacaaaaaag cccactattt
    14161 aaagtgggct atgcaataaa tttattattt aacactcatt ccgtgcctat ggttataact
    14221 cgccaatatc tgcactaatt tatgcaactg atcatctgtc agccattgca cccgctcaat
    14281 accaaacgag cgtttggcaa tggcgtgggc gtaatcccac ggcttttggc tttgatacag
    14341 caacgccccg attttattta tcaacccttg ccggtgaggg gcggttttac ttgctgttgg
    14401 gcgtttaccg tattttttcg acttcaccac aaacccttta gctttcattg tttgcagtac
    14461 ggtcattaat tcgctatcgg tcatcattga gcagcttggt ttatccaccg cctctaacaa
    14521 cagcatttta taggcgttat catccagttt tagctcattt ttgccgatat ggattttctg
    14581 tatcatctgc tttctagttt gcggttgcat tttgcttttc ctcctgccat ttcagccaaa
    14641 tttgataact ttcggtgttc ttaacggctt ccagttgccc catttgcttc attcgttcca
    14701 catacatcac ggcatcgtgt ttcttttggt ctgcttgccg ttgctgttgc tcaaggctac
    14761 tcactgcttt cgcttcactt cttactactg caaattgtgg cttcacgctt tcatatactt
    14821 tcttcaagta attatgattt gccagcggct cacatctgcc agtttcacgc cgattccgtc
    14881 ttacttgttc caccgtatcc attaaggctt tttctaacac attagaggga gggtaaagct
    14941 ccaataaact ctgcacaatt ttcaaggctc ggctattggc aaggctgttt ttctgtggct
    15001 taaataaccc taaatacgcc accaccgcac gcccacaatt cccaccgata ttgactatcg
    15061 tatttaacaa ctcacgccct gcatcatctt caatcaacgc ctcaaacgag atgtcggaat
    15121 ggcaaatcgg gcatttgcat agtttcatca ttctgttcct tcttctattg tttcgagatc
    15181 aacccaataa gttcgactat cagggtatgg gttatgccaa gttgctggag ttagctcgca
    15241 aataactaat tgttgtaaca caatctctcc cgatttcttt ttacataacc gatattcagg
    15301 aattttttga tattccattt tatgctccta taaaacacat tattcagccc acttaaatag
    15361 gggttaaatg ggctgtaaat gggttttatt acttcccctg tattgctaaa aactcacttt
    15421 ctttaatctc aaccaatccc tctgcaatct caggaaatgg ttcatcattt ttatcaatag
    15481 gcattggcat ttcaaccagt aaggtgtttt cacaaatgcc tgctacggct aaataacttc
    15541 tacctgatgt tggggaataa ctaaaatcac ttacaaaata aagcatattc aaacgtttta
    15601 agatataggg cgaaaaatca cgatgtttct cataaatttc attaattgct ttaaaatctt
    15661 ctgcaagttc tttccctttt tcgtaacgtt tatcaggttt gacgaggtaa aactcatcat
    15721 taaatttacc gaccttgaac cctttaacat ctaaaacttg gctaatattg gttgctttac
    15781 aagcaatccc tataactatt ctatgaaacc agcctgacct actaattaat ccatcattga
    15841 aaggatattt ttctaaaata gcattgagct tatccttgcg ttcttcttta gatacttgat
    15901 aatctgcata aatgcttttt agtggctctt gggttatatc ccctttaaaa aatctaaatt
    15961 tcattcttaa ctccttactg gggtggttaa tgtttccgat ttgccgttaa taacttcaaa
    16021 tgcacctttg gcaacaaatc ctgcaccgtg ccgagataaa caccactgcg aataaagtca
    16081 ctctgtttta aatatttttg tgcctgaata atctgcatta acgcctcgtt taattggctg
    16141 ttaagttcgt ttttctcttg ttcggtcatc atctcctcct aaaacggttt cttatgcata
    16201 cgtttacaaa ataccgctcg ttgccccgcc cagtctcagt tagcggtctt ttttgctgat
    16261 aattttgcaa ctttccaatg gtcttgggct tctgcataat tgcctttacg ttcggcttcc
    16321 gctgctttct cggcataatg tttgtagcgg tcaaactcgg tcgccttttg ttctgttttc
    16381 attttttcct cctgtggtta aaacacttta taaatgccct tctatcttgt ccccctcttt
    16441 gaaaaagagg ggctagggga gatttttaaa gggcattgaa aaggtttttt aactaagact
    16501 ttctttttaa ctgatttaaa atatgcaaat gatttaataa cgatgcatat tctttatcat
    16561 caaagtccat cattattaat tttttgttat cacaaaagtg tactgttaca ttcccgttaa
    16621 tattttctat tgaacaaacc ttgtctgtat taaccacaac aggtttatcc gtataattaa
    16681 cattaaaagt aataaacatt ctaaaccccc gccatatcta aactaatcgg ctgatacttt
    16741 ccgttttcat cacgtttata aaaacggata taacctttac taccgatcac ttgtacgcta
    16801 tctgaaatcg ctgtcattgc ttgattccat cttgcatcat caatctcaac acggcggaga
    16861 gagagaattt ttgctgtaga taaattacct tccttatcca cctcaaacgc attatcaatt
    16921 aaggctttaa gctccggttt tgccccttcc gaccaatcgt gcaagcattc atcaatcaag
    16981 gcttttgctg cgtgaatacg ctcatcaaag cgaatattct cttgcactgc taactgcaac
    17041 ttatattcac cgtcataagt aaatagtgtg atattgcctt ttgcaccgcc aatttttact
    17101 ccatatttgt cagccgatag gctgacaaaa gcccccacgt catcaaatac ggattgttta
    17161 aaatcaccta acgctttgct taacgcttgt gctttgctta caaattggcg aactaattca
    17221 tcacgttctt tgtcgatttc ttttactaat gcctccggct ttaaattgcc atcagcatct
    17281 ttccagtaaa tttcattacc gattgttact ttactcataa tacttcctct ctattccaac
    17341 ccgactttca cggtgcggat tgctttaccg ttatatttca ctcttttgtt gtgagcaggg
    17401 gacgacataa accgcactgt tttcgcctcc acccccaacc gttctgctaa ctcttccgcc
    17461 gtaccgtcag ccacattctc ttcgccaaca tacagggcat aaatcattcg ccgttttttc
    17521 atttctacac cttcgtaaca cgttcagact cccacacgca tttcaccccc cgcacctgca
    17581 tttgatagct gtcataccgt ctgccgcctt tggttttcat tccaaacagg cttgccaagc
    17641 cgttcttgac taaatcctgt gttttgcagt tatcccgtaa gaccaagcgg ggtgggcttt
    17701 tcgcttcaaa ctccactcgt tcaacttcca actccatcgc ctcacattcc aaagtggcaa
    17761 tttctaactt cacaaggctg tcgtggataa acgcatttaa ggggttcatc atttcgcctg
    17821 ctttttcgct gtaaaccttt tgcataactt gctccttagc taatcaacat cttgctatat
    17881 tgctcaacca aatctttact aattggtgtt tggttaatct cgctagaccg caccacgcca
    17941 cgcattaact tacttaatcg gcgggcattg ccgtgacaag ctttaattag cggggcatta
    18001 aattcatttg tacctaacgc actttcggct aatagcccca aatcttcctc gctcaaggca
    18061 tttcccaaat cacaagcaaa acctactcgg ctataaagct gtgccagctc attattttta
    18121 cctttaagat taaccaacaa tctcggcata ccggctaaca ccacgcccac gctggttaaa
    18181 tcgtggattc ggcggataaa ctccagcgag cgggtcgaaa gtaattcagc ttcatcaatc
    18241 attagcaacc tttcagagcc ttttaacttg ttcacaatgc tttctaatag ttcgttattt
    18301 acccctctgg catttgcccc caccgcctcg gcaatcttgc ggagcaagac tttaggtgtg
    18361 caactcggat caacctcaat taatgttgca gagctgtttc tgcgttcgta ttctttgagc
    18421 atttgggttt tacctaagcc ggctgcccca aaaatcacat taatttcgcc ttcaatatgg
    18481 gcaaactgca ttacctccat tcctctgcgt gccgccaaag ttggcacaaa agcagcgtta
    18541 tatttcgctt ccaccacttt tgccttatca cgctcaatca gctcgtctac tttgcgatcc
    18601 atttcagcca cattgccgtt ataatcgcct ttgagataca gactgactgt ggcaacggat
    18661 acacctaaaa gctgtgccac ttgtttttgt tgatagcctt tgctatccat taaggctcta
    18721 agttcttggt ttttcatcgt ttagcctccc actgctaact ttttttcgta atcctctttt
    18781 tctgctcggg tcaaaaaaat cggttctact tcttttttcg gttttcttgc cgttgccagc
    18841 aagctaaaat cgtttttctg ctcaatggtt aaaaccgggt ttaattccgc attaatctca
    18901 tcaagctgtt gctgtttaag gttggctcgg cgtttatggc gttctttacg ctgctgttct
    18961 accatcgcca ccgggaatgc ctctcgggtg ttaccgttcc aaattgcctc gcaaataaac
    19021 ctgccgtctt tggtacgcac ctgcacgctc tcggcattgt gaatatcaat cccgatcacc
    19081 acttcttcac ggtcaaaatc cagtaatttc aagttaaaat agtggttgtt attccaactt
    19141 acccaacctc gatccggctt acggataaat tccggtcggc tcatatcccg caactcaata
    19201 gggcttaaca tcaccacatc ttctgcgtgc aacatctgct gatatttgcg tgccggcgtg
    19261 gtacggattt ccgagtgaat atgctcgttg ttgtaccagt caatcaccga ttggattact
    19321 tcaatcaact gttgccacgt tggcaatttg ccttgggctt tacgttgtag tggggttaat
    19381 tcccctttgg catttgccag tgagttcacc gcatacaggg ttttgcgaac ggtttccgga
    19441 tctgcaccgg ttgcatagcc ggtttcaaac tgtcgggcaa tcgtcatacc gatggtttta
    19501 tttaagcgtt caataatgcc tcgcccctgc ggattgcccg caatccctgt ttcgtgtcgg
    19561 ataccgaggc ggggcaacat ccccgtgatt tccgcatcca aaaatttatt cttttcacca
    19621 ccaccgttat ccgagtagta gattgccggc acaccgtgta ggctaatggc gtggcgtagt
    19681 gcatcagcca ccgcaaaggc gttctcactg agtgccagcg accagcccac cacttttcta
    19741 ccagcaccat cgacaatcat tgtcagctca ggggtaaacg gcttaccgtg tatcgggtgg
    19801 gctactttga gcttcagtga gtgaccgtca ccaatccata catcatttgc tcgaagtacc
    19861 gaccaatccc gcttcacata gctcagtaac tgcttgtaat gcgagccggt gcgtctgccg
    19921 tactctttca catacaacgg caacttattc atcgctcgct gtacttggct taggctgggg
    19981 cattgtgcca acagtagcgg gttgtctgca tactgatacg cccattccac ctcaaattct
    20041 cggtaggctt cggtgaggca aataccgttt ttctgccgat atacgcctaa aaaagcactt
    20101 agccaccaaa tttcttccgg cttggtctcc tgccgtacct gtggggcaag cagtttcaac
    20161 cgttgctcgg cgttctctgc cttgcagtaa tccaccaccc agccgtttaa ggttcgcacc
    20221 gagagtgtgc gttttgccgt ctttttagca tttgctacgg caaccagctc cgccaagtgc
    20281 ggtggcattt cgccttgttt ggcaaggttg caaaggtagg ttatcgcttt aatccggctc
    20341 attgagcctt ccaactccaa cacatacgcc accagtgcca ttcgtgcatc agcaatttct
    20401 cgctgtttgg tggtcaggtt tcccacatcc acctctgcac gcactaccgg taactttttc
    20461 ggcttggctt ccaccaccgc cgacataaag cgggagcgga tttcggtttg aacttcggtg
    20521 ggtaaagagt taatgtgata ttcaaaacca cctcctttaa cccctttcaa tggacgagtt
    20581 gcccattgtt cttttttggc ttgtctagtt acatttgttg ggtattttga taagccacta
    20641 atacctgcta attcttttgc actaaaccaa tctttcataa cagctatcct tgttatgcaa
    20701 catcagggta acgactaggc catatttcgg ctggcgtttt tcctaatgct tttgcgataa
    20761 tttcttcacc gtttttataa ggtttatcaa gagcatttct tactgttgtt ttggaaagcc
    20821 cattctcaat ccctaactga gaaaatgtta ttcctttctt catcaattca gctcgaatat
    20881 cagctctatg catatcttga gctcttttct ttttattcat tttgtgagat cctccacatt
    20941 tagtttattt gctacgcttt agcgtacttg attaactaca ggactaaata taatacttat
    21001 tcttttctaa atcaatagtg atttaataaa ttttttaaat cttttttaaa tctatttgta
    21061 agctattgat tttaaataac ttaatcaatt ttgattttaa aatcattttt gattaagaag
    21121 gggttaatta tgaaatcatt tgataaagtt tggttttcag ccaaagaact agaagaattg
    21181 gatttgcctg accttccaaa gcaagcaaca aacattacaa gaaaggcatt aaaagaactc
    21241 tggataaaac gtgatgcagt tggagtaaaa ggtgggggga atgaatatca cataacttca
    21301 ttgcctcgta aagcccaaga agcactcgga tttaaaagtg gaataaatgc aatcaaggat
    21361 agcatagtaa gagagattac acctgaagag caaaacaaag gatctgaatt atcaggcacc
    21421 gttttgaata acataatctc aatgattgat agttttgcat ctattaaagt atctgcaggc
    21481 tttgggagct ttaatgaagg tgtaacaaaa cctgatggac aagagcctta tgctgatagc
    21541 ttgttgcata cgcttggtgt taatgccaag aagtgtgctg ttttttgggc aagtggagac
    21601 tcgatgtatc cgactattga taatggcgac cagctactag ttgatttaag tcgtaatgag
    21661 atacgaggcg acaataatat ttacattgta caaaacggcg acagtgtttg ggttaagcgt
    21721 gtaaaactgc tatgggacgg tgtagagctt atttcagaca accgagaaga gtacgagtta
    21781 ataaagatta cagcagacca agcccaaaac ctacaaatca tcgggcaagt ggtacacatc
    21841 gggcattctt tagtttaaaa cagatttaaa atagttttaa aaccgatcaa acctatgcaa
    21901 aaaataacgc aaaaactgct cgtttttttc taatcctgct cattttgttt tttgcatagc
    21961 tccaaccaaa caataacggc gaacccttgt attcacgggg ctcgccgtta tttttccgcc
    22021 caaatttttt tctttctctc tatgcaaaaa agatcagtac cccacaggat caactgaatc
    22081 aatggtagca ctatattctc gatttggctc agcaagggtg gaaaacttaa ctttttgccc
    22141 gactttaacc tgtgcaatat cgccctccga aatttcaagt ttaatcagca tcttagataa
    22201 atctgctacc tgtacaatag ttggcgaagt ttgattggaa ttgaccgttt gcccgacaga
    22261 aaccggtaca gacacaatca cgccgtccat tggcgagata atttgcgtat aagttaagtt
    22321 ggttttagca tcgtttaccg aaatttcagc cgattttaat tgtgctttaa tgttatccac
    22381 cgtggctttg gctgaagcta aggtattttt agccgtttca agatcgttta aagaggcact
    22441 atttgcccga tagagtttat ttaagcggtt gtagttcgat tgagctactt caagtgcaac
    22501 ctgtgcagag gtgagctgtg ctttataaga agaaagccgg gcttgagcgg tgcttaaggt
    22561 gttgctctgg ttgctggaat caatatctgc aattaaatct ccttgcttca ccgattgccc
    22621 gagctcgaca tagagttttt ggattttgcc cgaaacttga gcccccactt cggtgcgttt
    22681 attcgctcga accgaaccgg ttgccagcac atttttgtta atttctgccc gtgtgacagc
    22741 ttgggtaatg taatggattt gcggtttatt ggtttgttgc tgataataaa aatagccgcc
    22801 tattccgaga gcggcaatta gcacaagagt ggctaatgtt ttacgtttca tactgttcct
    22861 tgatgatata caagcggtca aatttagaca aaaatttgca aaaaagttgc tctcaactaa
    22921 acaatgccaa atgtggctcg aagatagctt gccaccgctt catctttgtt aaagccaatc
    22981 acttcattat tcggtaatac ggcttttaaa cgtggatcgg cattacccat taaacaacct
    23041 ttgccggcta aacttagcat ttccacatca ttcataccgt caccaaaagc gatacaatcg
    23101 gctaaggtgt agccccgtaa tttgaccaat tcggcgagag cattggcttt acacactcct
    23161 tttgccatca cttcaaggca aagtagggca gagtaggtca tttgcacacg gtcgccatag
    23221 gtatcccgaa tataatgttc aatcggtact aaagcttcag cagttttgcc gataaaaaac
    23281 actttctcgg tatttcgacc gtgatgatga gcaaaattta ctacttgata gctaaatcct
    23341 gaatcttgat ggaatttttt taactctgca atctctttat tgataaacca ttcatcgcct
    23401 tgatagctgt ttaagcacac attttggtcg tcaaattcaa tgttcattaa ttcaaaggca
    23461 agatcttccg gtaaataatg gttgagaatt tttttaccct ctaaattgtt ggctcttgcc
    23521 ccgtttgaag tgactaacat tgcattttta acgtttactt tcccaataat ctgagacaca
    23581 tctggatgat tgcgaccggt ggcgaaaaaa atatcaacac ctttttttga tagttgttct
    23641 aatgtatcaa tagtgaaatc accaatttta tgattggcat ttaatagtgt gccatcaaga
    23701 tcggaaataa ttgcacgaaa tgggagagtc ataatctatt cctaacaata aaataatatc
    23761 aaaggctacc aaatttgatc tgaaacttca aagaaaacaa atttttttaa atttttttac
    23821 aaaaatatca ttaaattcta aatatctgtt ttattattaa aattaattc
//
LOCUS       DANLRW010000031        23194 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.031, whole genome shotgun sequence.
ACCESSION   DANLRW010000031 DANLRW010000000
VERSION     DANLRW010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 23194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23194
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.031"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            104..1651
                     /gene="sbcB"
                     /locus_tag="PXA71_000997"
     CDS             104..1651
                     /gene="sbcB"
                     /locus_tag="PXA71_000997"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HDL5105121.1"
                     /translation="MSDKFSFFFYDYESFGVSPALDRPAQFAGIRTDADFNIIGEPVM
                     FFCKQTPDYLPSPEAVMVTGITPQQCNAEGVSEPEFAARIHAEFSRANTCTIGYNNIR
                     YDDEMTRYTFFRNFYDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPTDETGMPSF
                     KLENLTKANGIAHENAHDAMSDVYATIAMAKLIKQKQPKLFDFFFNLRSKKEVEKLID
                     TGEMTPLVHVSGMLGNYRGNTAWVVPLAWHSTNQNAVIVCDLSGDMNGLLTENAEVLR
                     QRLYTKRDELAENELPVPLKLVHINKCPILAPAKTLLPENAERLGIDRALCLENLKTL
                     KAQKSLIREKVIEIFNEERTFEPSTNVETTLYDGFFSPADKNNMAILRTLPPEDLANH
                     GLKFEDPRVEALLFHYRARHYPQTLSRAEQIKWQKHCNQQIEAKAAQFAQSIDDLFQQ
                     HHDNPEKVKLLENLTAYAEQISQQQAVIYRQNVAKDEKLLSELNRVAEQPLDKTEKLK
                     MLKELIK"
     gene            1648..2247
                     /locus_tag="PXA71_000998"
     CDS             1648..2247
                     /locus_tag="PXA71_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HDL5105122.1"
                     /translation="MTMDNLPLEQHPFDPILPEQATVVMVGTFPPTSEKRCMEFHYPN
                     FQNDMWRIMGNIFYADPNYFRVGEEKRFDPIRIEAFLREKGVALCSSAKTAIRLKGNA
                     SDKDLKIVDPIDMDELLLKLPKLKWLFTTGGLATDTLLGLLPEKHKAPKTNEWVVYPY
                     SATRELYLYRLPSTSRAYPLSLANKTEAYRQFFRTAGLI"
     gene            2259..3077
                     /locus_tag="PXA71_000999"
     CDS             2259..3077
                     /locus_tag="PXA71_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HDL5105123.1"
                     /translation="MKYDLHAHSTASDGVLSPTELVQRAVEQGVTMLALTDHDTISGI
                     QEAKNFAQNQPLELISGVEISILWQEKSIHLAALNIDENNEELVKFLDNQAQLREERA
                     VEIGEKLAKVGIANAYEGAKALATGEVTRAHYGRFLYEQGYVRNIEHAFKRYLGMGKP
                     AYVKPRWSSLEDAVNVTHTSGGVISIAHPLRYKMTARWIRRLIADFKQAGGDGIEVSG
                     CGQTPDQRQLLARWAKEFDLYGSVGSDFHYPTGWIELGKSLELPQECKPIWTLF"
     gene            complement(3113..3732)
                     /locus_tag="PXA71_001000"
                     /pseudo
     CDS             complement(3113..3732)
                     /locus_tag="PXA71_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596976.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+/Pb2+ permease"
     gene            complement(3743..4939)
                     /gene="efeB"
                     /locus_tag="PXA71_001001"
     CDS             complement(3743..4939)
                     /gene="efeB"
                     /locus_tag="PXA71_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deferrochelatase/peroxidase EfeB"
                     /protein_id="HDL5105124.1"
                     /translation="MMAETTSRRDFLKHTALVGAGLLSAPAFALESRQISEKSQNQYD
                     FYGKHQAGIVSPAQKHIYFLVLDLDTTDIAKVKTLFQNWTEYSRNLTLGKNVKPYSAN
                     AYVPPADTGEADSLSAQNLTLTFGVSANFFTKLGIEKHKPKELNDLPHFPRDQLQAEY
                     TGGDICIQACADDPQVAFHAVRNLVRVARGEIKMKWSQMGFNSFANQDTPRNLFGFKD
                     GTANAESLKDQENTVWVQQEGWLKGGSYLAVRRVKMFLETWDRTHLQSQEETFGRHRD
                     SGAGIGHQHEFDKLDLAKKDEKGNAVIPEVSHAHLANKTGLKILRRSFSYSSGIDDKG
                     QFDSGLLFVSFQQSPEQFIKIQNALGNVDKMNEYITHIGSGLFACFAGVKDENDYLGK
                     ALFDLI"
     gene            complement(4950..5795)
                     /locus_tag="PXA71_001002"
     CDS             complement(4950..5795)
                     /locus_tag="PXA71_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EfeM/EfeO family lipoprotein"
                     /protein_id="HDL5105125.1"
                     /translation="MFLLKGNFYAFNQTCFCTFALSGFFVATQAAALDLTKETEAYKQ
                     FVVEQIDQLVTDTEKFVGYLNKGDVQKAKKIYPLARMYFERSEPIAESFGDLDPRIDA
                     RLADLAEEGKTEKDWSGFHKIEKVLWQKNTTKGTKATAEQLLKDVKELRAKIPTAEVT
                     PEPMITGAVDLLNEVSTTKVTGEEEIFSKTDLYDFKANIEGAEKIYEIFKTQLEQIDA
                     KLSTEIGSRFAAVNALLAKHNKSKTGYDYVPYNKLSKADIKALAEAVNQLGEPLAQLG
                     VLLNK"
     gene            5958..6194
                     /locus_tag="PXA71_001003"
     CDS             5958..6194
                     /locus_tag="PXA71_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HDL5105126.1"
                     /translation="MSRTTSVTLAEPLSQFVNQMVESGRYGSTNEVISAALKILEAQE
                     QQLIQLRALIDEGLESGVSEETVQSIISKAKRNV"
     gene            6433..8451
                     /gene="uvrB"
                     /locus_tag="PXA71_001004"
     CDS             6433..8451
                     /gene="uvrB"
                     /locus_tag="PXA71_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HDL5105127.1"
                     /translation="MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVT
                     GSGKTFTIANVIAKLNRPAMVLAPNKTLAAQLYAEMKAFFPENAVEYFVSYYDYYQPE
                     AYVPASDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
                     MLHLQVGAMIGQREILSRLAELQYTRNDQAFQRSTFRVRGDVIDIYPAESDEVALRVE
                     LFDDEIENLSLFDPLTGHSLGKVPRYTIYPKTHYVTPRERILEAIEQIKVELADRRTY
                     FIKENKLLEEQRIAQRTQFDIEMMNELGYCSGIENYSRYLSGRKEGEAPPTLFDYMPA
                     DGILVIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLSPQT
                     IYVSATPGAYELEKNPDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIHKRVAVDER
                     VLVTTLTKKMAEDLTDYLDEHGVRVRYLHSDIDTVERVEIIHDLRMGMFDVLVGINLL
                     REGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRITNSMQKA
                     ITETERRREKQMKYNEEHGITPQALNKKVGELLDIGQSDKPKRGKQAVKKAENSATDY
                     KPKSRKELEKELKTLEQQMRDFAKDLEFEKAAAVRDKLQHLKAYLLEV"
     gene            8454..8864
                     /locus_tag="PXA71_001005"
     CDS             8454..8864
                     /locus_tag="PXA71_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105128.1"
                     /translation="MISRSLFSKLILFAKIVIFSQLVFMVVIWIAHHIMREYSNPFER
                     FGTLFNNVFLTFIIPMMVSSAVIVYKGYTQKNEDKVFWIYMGFFLIWILGFIYFEPAV
                     YDKSLKISGAGFGAMLSIIICSKLLPKETNKEQL"
     gene            complement(9085..10173)
                     /gene="purK"
                     /locus_tag="PXA71_001006"
     CDS             complement(9085..10173)
                     /gene="purK"
                     /locus_tag="PXA71_001006"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HDL5105129.1"
                     /translation="MQKSAIYPPVYVLGNGQLGRMLRYAGAPLDIEVKPLAFDAPVFD
                     IEPNSIITAEIERWADTPLTQLLGNHPNFVNLNVFGKLADRFTQKSLLDELHLATSKW
                     QLLENAEHWQDIFQHIGEKVVVKRRTGGYDGRGQWIVTQDSIHQITPELFGEVIAEKF
                     IPFEGEISIVGARFRDGSTRFYPISHNLQQNGILRYSVSDVNLPNQALYQQQAEQMLA
                     TVMQKLEYVGVMAMECFVVGDKLLINELAPRVHNSGHWTQLGCAISQFELHLRALLDL
                     PTPALDQIAPSVMVNLIGIEHNKQWLSLPFSQLHWYGKEVRAGRKVGHINLTHTDKNG
                     LIELLEQLRPSLTEDFHSGLDWAINKLK"
     gene            complement(10192..11157)
                     /locus_tag="PXA71_001007"
     CDS             complement(10192..11157)
                     /locus_tag="PXA71_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HDL5105130.1"
                     /translation="MSKKLLILHTGGTISMKEGEDGKVSPSNENPLLAALERLNHPAK
                     LAQESLFNIPSPHINIEHWQQLKMRIEKAVNEENVDGVVITHGTDTLEETSYFLDLAL
                     SVNIPVVITGAMRSSNELGADGLINLQSAILVALNEESRDKGVLVVMNDEIHNAKFVT
                     KTHTTNVATFQTPTFGPCGLVTKESVIFFQKLTTYERYPIQQVTKANVQLLKAYAGMD
                     SFLLEQLAKSKCDGVVIEALGAGNLPPSCLAGIEALVNANIPIVIVSRAFNGITQDVY
                     DYVGGGKQLKQKGIIFTKGLSGQKARIKLMVLLSQTLDKPLSDYF"
     gene            complement(11172..11669)
                     /gene="purE"
                     /locus_tag="PXA71_001008"
     CDS             complement(11172..11669)
                     /gene="purE"
                     /locus_tag="PXA71_001008"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDL5105131.1"
                     /translation="MPNKAEIAIVMGSKSDWATMSEATQILDQFGLSYHVEVVSAHRT
                     PDKLFSFAETAETNGYKVIIAGAGGAAHLPGMIAAKTIVPVLGVPVKSSMLSGVDSLY
                     SIVQMPKGIPVGTLAIGPAGAANAGLLAAQILAAFNPDIAEKLRIFRQTQTQMVLDNP
                     DPRVE"
     gene            11843..12487
                     /gene="sspA"
                     /locus_tag="PXA71_001009"
     CDS             11843..12487
                     /gene="sspA"
                     /locus_tag="PXA71_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HDL5105132.1"
                     /translation="MTSSINKRSVMTLFSDKNDIYSHQVRIVLAEKGVPYEIENVMLG
                     SISEDLLELNPYGNIPTLVDRELVLFNPRIIMEYLDERFPHPPLMPVYPVSRGQCRLN
                     MYRIEQDWYSQIDIVNKDPESAEGKKALAQLKEDVLALAPIFAAKPYFMSDDFSLVDC
                     YIAPLLWRMQILGVKFSGATAKPINAYMTRVFQRDSFIQSVGGEAPKHLMDDKD"
     gene            12487..12894
                     /locus_tag="PXA71_001010"
     CDS             12487..12894
                     /locus_tag="PXA71_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HDL5105133.1"
                     /translation="MKPLRPYLYNAYYNWIIDSDNTPYLLVNAEFPDVDVPVEFVKEG
                     KIILNISPRSIGQYIVADEYISFSARFQGMLRDIYIPFGAMVAIYAQETGDGIMFQEE
                     AYYTEEAYQARVRAVEQPKKIKAKKTSTLKLVK"
     gene            13091..14050
                     /locus_tag="PXA71_001011"
     CDS             13091..14050
                     /locus_tag="PXA71_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5105134.1"
                     /translation="MKFHKTLLVTLLSSLSVAALAQDKIQNVAITAIVEHPALDSIRK
                     GVIEELAREGFVDGKNIKIDYQSAQGSTATAAQIARKFVGDKADIIIPITTPSAQPVV
                     AATRSIPIVFSGVTDPVAAKLVKSWEPSGTNVTGISDHKAMAPQVKLIQTLVPDLKAV
                     GYVYSAGEVNSAIVLEELKQEAQKQGFTIVPVAVQRSADIGTAARSLNGKVQAIYISE
                     DNAVVSAYEALHKAALEAKIPVIAADRDTVQRGAVAAYAVNQYDIGVATGKVAARVLK
                     GEKAGTIPIQEVSKLELSINTKTAKELGITIPEVLIKEAKQTF"
     gene            14130..14390
                     /locus_tag="PXA71_001012"
     CDS             14130..14390
                     /locus_tag="PXA71_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HDL5105135.1"
                     /translation="MGWIAAIIVGAIIGWIASAVMKSEGGLCKNIIIGILGSSLGRWV
                     FGDVLGIGSAYSAGDFNIVGIFFGVLGAALLIFILRKLSIIN"
     gene            complement(14440..15330)
                     /locus_tag="PXA71_001013"
     CDS             complement(14440..15330)
                     /locus_tag="PXA71_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5105136.1"
                     /translation="MDKLNAISLFCKVIETQSFTQAAQQAQISLPMASKLVAQLEEHL
                     NVRLLQRTTRKITPTEAGLLYYQQCLPILNELKEADASVSNINSTLQGKITMSVPMDF
                     GSRFIAPYLGKFMEDYPNLALHIEFSDRRVDVIAEGFDLVLRIGSLADSSIVAKKIAD
                     SHLVLVASPDYLARFGEPKGLEALVERDCLLYEYHPQWQFSQQGQKMQIKPQGKIYSN
                     NGYALVQMAKAGLGIINIPKFLIKHELKNGELIPIMPFLTQEPLQISLLYPNRRYLSP
                     KVRILIDFFTQLMQEQKEYI"
     gene            15460..18066
                     /gene="topA"
                     /locus_tag="PXA71_001014"
     CDS             15460..18066
                     /gene="topA"
                     /locus_tag="PXA71_001014"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDL5105137.1"
                     /translation="MGKSLVIVESPAKAKKINQYLGSNYVVKSSVGHIRDLPKSGSDE
                     KTEKAKPISTKGLTAAEKAKIKAEKERVALVKRMGIDPYNGWKANYQILPDKEKVVSE
                     LKSLAKKADHIYLATDLDREGEAIAWHLREIIGGDDSRFSRVVFNEITKDAIKKAFDD
                     PQPLNIDRVNSQQTRRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREI
                     KAFQSEEFWTILANTQINRKKLPLELTTYKGKKFSASNEAEANVAVRALEQSDFIVSN
                     IEAKETSSRAAAPFITSSLQRAASTRLGFGVKKTMMLAQRLYEAGYITYMRTDSTNLS
                     REALAMARGYIQDNFGANYLPEKANVYRSKDNAQEAHEAIRPSDVNVKMADLKGMDKD
                     AERLYDLIWRRFLACQMLPARYDSTAVTVSAGDYELKANGRVLRFDGWTKVLPVQGKN
                     PEDQELPAVELHQKLTLDEIVPSQHFTKPPARFNEASLVAELEERKIGRPSTYASIIS
                     TIQERGYVRTENKRFYVEKIGEVVTDRLNESFKDLMNYDFTANMEEVLDQIAEGSKNW
                     KEELNTFFKHFSEELSQAELDELEGGMKPNSLVPTDIDCPTCGRKMAIRTASTGVFLG
                     CTGYALPPKERCKTTMNLIPEAEFFNVLDSDSETKALMARKRCPKCDSAMDSYVIDAE
                     RKLHVCGNNPNCDGHIIEQGSFKIKGYDGPVVECDKCGSDMHLKLGRFGKYMGCTSCD
                     NTRKILKNGEVAPPKEDPIAFPELKCEKADAYFILRDGASGVFMSAHNFPKVRESRAP
                     KVVELAQYRERLPEKLQYLADAPQQDPEGNEAIIRFSRKEKRQYVTSEKNGKATKWIV
                     DYLDGKWVERKK"
     gene            complement(18116..19054)
                     /gene="yvcK"
                     /locus_tag="PXA71_001015"
     CDS             complement(18116..19054)
                     /gene="yvcK"
                     /locus_tag="PXA71_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HDL5105138.1"
                     /translation="MENTDIIPFKPTRHHYLNQLNAVVALGGGHGLGRLLSALSFLKE
                     RLTGIVATTDNGGSTGRIRSQQGVIAWGDLRNCLNQIIVKPTIASRLFEYRFAGTGEL
                     AGHNLGNLILTALENMQIRPLEGINLVRELLHVRSQLIPMSEIPVHLIAQLHSGESVF
                     GEVQIDSLAETPQHLALDTMVVATPEAISAIQSAELILLGPGSFFTSIMPNLLVAGIA
                     NSIAQSKARVVFIDNIGQEHGPAGQLSLNQRIEWMENCIGQARINAVITTDDAGSELP
                     EHIQILRKNLSANDVYYRHDRNKLSKAIDELLAQNI"
     gene            complement(19068..20144)
                     /locus_tag="PXA71_001016"
     CDS             complement(19068..20144)
                     /locus_tag="PXA71_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL5105139.1"
                     /translation="MFQMLQDWYRKKFTDPQIVVLFSILLIGFGIIYFFSDLLMPLLV
                     ALVFAYLLEWPIRFLSSKLKLPRTLSVILVLGGFIALLSFLGVVLLPSLWNQAVTFIQ
                     DLPSMFNLLNAWLQALPEHYPELVDYATLDSIVNTAKSNILSMGESLLTLSINSIISL
                     VGLGIYTFLVPLMVFFLLKDKIVLMRSFSKVLPQNRRLATRVWFEMQQQIANYIRGKF
                     LEILIVGVVTYIIFLFFDLRYPLLLSVAVGISVLVPYIGAVLVSIPVMLIALFQFGLS
                     PDFYYLMLAFIISQLLDGNLLVPFLFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIP
                     LATLVKAVLQALPSAQSDAIILEK"
     gene            complement(20175..20930)
                     /locus_tag="PXA71_001017"
     CDS             complement(20175..20930)
                     /locus_tag="PXA71_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5105140.1"
                     /translation="MKKEEVGHHFLARLGKTRLRPGGKLATDWLIANGDFDKNKKVLE
                     VACNMGTTAIQLAQQFECQIVGIDLDEDALEKARKNIKENHVEHLIQVQRANATKLPF
                     DDESFDIVINEAMLTMLPLEAKEKAIREYFRVLKPNGFLLTHDIVIQDKDSDTLLAEL
                     RDAINITVSPLAKADWKSLFQRCGFRNVDTFSGEMSLLSPKGLIHDEGVLGAMKIIGN
                     ALKPENRETFNKMYKLFNDPDKKLGFIAVCSQK"
     gene            21082..21291
                     /locus_tag="PXA71_001018"
     CDS             21082..21291
                     /locus_tag="PXA71_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome alternative rescue factor ArfA"
                     /protein_id="HDL5105141.1"
                     /translation="MSKQKNDYLHQRGQIKESAVKALVTDPLFRQRVERNRKGKGSYR
                     RQEKHKKTIYGQKETPFKNIRLESF"
     gene            complement(21340..22062)
                     /gene="bioD"
                     /locus_tag="PXA71_001019"
     CDS             complement(21340..22062)
                     /gene="bioD"
                     /locus_tag="PXA71_001019"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDL5105142.1"
                     /translation="MPSLFITGTDTNVGKTVVTRAIIQTLTKHSFPVIGYKPIACGGD
                     DSLPTEPTQYDYATEDNSDVLTILDSCPTNVSYRDINSYTFIHSSTPVFAALDAVHHI
                     QLEKLNTDLKRLENAYPNVVVEGTYGWLTPINKDYYFADWVMQNNMPVVLVVGIKEGC
                     VNHALLTANEILQRGVKLVSWVANRVNPGLRHYHELIELLTQKINAPLLGQIPYMGHP
                     EHKELSSYIQNPEPLLAYFSKP"
     gene            complement(22110..>23194)
                     /locus_tag="PXA71_001020"
     CDS             complement(22110..>23194)
                     /locus_tag="PXA71_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HDL5105143.1"
                     /translation="PASVTNLTKILIDNHFILERTVQTTLSRGRPSVGLAVSNFFWQL
                     LCVTVSSHKIEISLCKLNGAEIYKQDYTISAENYPRLNDFILNFITNFRQLYCVNTSQ
                     LLAVSISVIGKINAEKDSITQLGNKNIFCNITSKLSPLFHCPILLSEHFQLWLLAEST
                     VGSLINQDNAIFLQLDDTVNLSVLLSGSLLSKQSKMNVDNMLMPRFSHLSDEIFPELD
                     EIHRYKLVNQVTFPAIVRLIDRYLPNNLKSQEQKISWLCQKIDENQPLALAILSHITD
                     NLAYALMNLVNIFSSEKIMLNSPLIKIKEPLFTQISEKLHKNLLQTNLKIDLVTSQYD
                     WNSPLIACSAIKQGIYDGNLIKDRIN"
BASE COUNT         6927 a         4458 c         4943 g         6866 t
ORIGIN      
        1 ttttagcatt tgcaaatttc taacggaaat tgaccgcttg tattccctcc tttctgcctt
       61 actgtgctac aatcagccca attttttcta acaaattgaa cgaatgagcg ataaattctc
      121 ttttttcttt tacgattatg aaagtttcgg cgtgagtccg gcgttagatc gtccggcaca
      181 atttgccggt attcgaaccg atgcggattt taatattatc ggtgaaccgg taatgttttt
      241 ttgtaagcaa acgccggatt atttacccag ccccgaagcg gtgatggtta ccgggattac
      301 accgcaacaa tgtaacgctg aaggtgtatc tgagccggaa tttgcagccc gaattcacgc
      361 tgaatttagc cgagcgaata cttgtactat cggttataac aatattcgtt atgatgatga
      421 gatgacccgt tataccttct tccgcaattt ttacgatcct tacgaatata gctggaaaaa
      481 cggaaattct cgttgggact tgttagattt agtccgtgcc tgttatgcgt taagacctga
      541 tggtattgaa tggccaacag atgaaaccgg tatgccaagt tttaaattgg aaaacctcac
      601 caaagccaat ggcattgccc atgaaaatgc acacgatgcg atgtctgatg tgtatgccac
      661 catcgcaatg gcaaaattaa ttaagcaaaa acagccaaag ttgttcgatt ttttctttaa
      721 tttacgcagt aaaaaagaag tagagaagtt aattgacact ggtgaaatga caccgcttgt
      781 gcacgtttcc ggtatgctgg gcaactatcg aggaaatacc gcttgggttg tgccactggc
      841 ttggcactca actaatcaaa atgccgtaat tgtgtgtgat ttatcgggcg atatgaatgg
      901 cttattgact gaaaatgcag aggttttacg tcagcgttta tacaccaaac gagatgaatt
      961 agccgaaaat gagttacctg tgccgttaaa attagtgcat attaataaat gcccgatttt
     1021 agcaccggca aaaaccttac tgcctgaaaa tgcagaacgt ttaggcatag acagagcttt
     1081 atgtttggaa aatttgaaaa ctttaaaagc acagaaatcg ctgattcggg aaaaagtgat
     1141 tgaaattttt aatgaagaac gcacgtttga gccttcgacc aatgtagaaa ccactttgta
     1201 tgacggcttt ttctcgcctg cggataaaaa taatatggcg attttacgca cgctaccgcc
     1261 tgaagattta gccaaccacg gcttgaaatt tgaagaccct cgagtagagg cgttactatt
     1321 ccattaccga gcaaggcact atccacaaac actcagtcga gccgagcaga tcaaatggca
     1381 gaaacattgc aaccagcaaa ttgaggcaaa agcagcgcag ttcgcccaat cgattgacga
     1441 cttgttccaa caacatcacg acaacccgga aaaggtaaaa ttattagaaa atttgaccgc
     1501 ttacgccgag cagatttcgc aacaacaagc ggtcatttat cgtcaaaatg ttgcaaaaga
     1561 tgaaaaattg ctgagcgagc ttaacagagt agcggaacag cccctagata aaaccgaaaa
     1621 gctcaagatg ttaaaagagt tgattaaatg acaatggata atttaccgct agaacagcac
     1681 ccgtttgacc ctattttacc tgaacaagca acggtggtaa tggtcggcac ttttccacct
     1741 acatcggaaa agcgttgtat ggaatttcat tacccgaatt ttcaaaatga tatgtggcga
     1801 attatgggca atatttttta tgctgaccct aactattttc gagttggtga agaaaaacgc
     1861 tttgatccga ttcggattga ggcgtttttg cgagaaaagg gcgttgcgct ctgttcttcg
     1921 gcaaaaacag cgattcgttt aaaaggaaac gcttcagata aagatttaaa aattgttgat
     1981 cctatcgata tggacgaact gttgctcaaa ttacccaaac tgaaatggct atttaccaca
     2041 ggtggtttgg caaccgatac gttgctcggt ttattgccgg aaaaacacaa agctccgaaa
     2101 accaacgaat gggtggtcta tccttattcc gccacaagag aactttattt atatcgcctg
     2161 ccttcgacgt cgagggctta tccactcagc ttagccaaca aaaccgaagc ctatcgccaa
     2221 tttttcagga ctgccggctt aatttaagga taaataaaat gaaatatgat ttacacgccc
     2281 acagtaccgc ctctgatggc gtactttctc ccactgaatt ggtacaacgt gcggtagagc
     2341 aaggggtaac aatgctagct ttaactgatc acgatacgat ttcgggcatt caagaagcga
     2401 aaaattttgc ccaaaatcaa ccgcttgagc ttatctctgg ggtggaaatt tcgattttat
     2461 ggcaagaaaa aagtattcat cttgcggcgt tgaatattga tgaaaacaac gaggagctgg
     2521 tgaagttttt ggataaccaa gcccaattaa gggaagagag agcggtcgaa attggtgaaa
     2581 aattagcaaa agtcgggatt gcaaatgcct atgagggggc aaaagcgttg gcaacagggg
     2641 aagtaactcg ggcacattat gggcgttttt tgtatgaaca aggctatgtc cgcaatattg
     2701 aacacgcctt taagcgttat ctgggaatgg ggaaacctgc ctatgtgaaa ccgagatgga
     2761 gtagtttaga agacgcggtg aatgttaccc acacctcagg cggtgtgatt tcgattgctc
     2821 acccgctacg ctataaaatg actgctcgtt ggattcgccg tttaatcgca gatttcaaac
     2881 aagccggagg cgatggcatt gaagtatcag gctgcggaca aacacctgat caacggcaat
     2941 tacttgcccg ttgggcaaaa gagtttgatt tatatggctc ggtcggttct gatttccact
     3001 acccaactgg ctggattgag ctcggtaaaa gtttggaatt accccaagaa tgtaaaccga
     3061 tttggacgtt attttagtgt tatcggggca aataatttgc cccgattttt tactatttca
     3121 ctttaacttg cttaaagtct gccattacca cacctagttc ggaaaccagt tcactgattt
     3181 ttgccatatc cggcttttca gcgttcagat taattcgcat taaaccaaga atacgctcaa
     3241 atttgccata atggggaaga ctgatttccc gtactgcttt ttcctgtttt acccaattct
     3301 taccaaactg ataagccgcc catttgattt tggcgatttc ttgagttggc acggtttgag
     3361 caagttctgc ataaagcggc gtcatttttg ccacaaaatc ctgatgtttt tcagcataac
     3421 cgctagggtt ttgttctttt tcaaacgcat agagttttta gaaaggctct ctaagttttc
     3481 agcattgggt gtttcaatcg cttttttcag agcggtctgt acttcaactc cggcgaggga
     3541 atcgtgctgg ctaatctgct caaaatcgtg ctgtaaagcg gtcaaatttt ggctggattt
     3601 tgcaaattcc ccttttttac tctctgccat tgcatcggaa agctgaacaa ataaggggct
     3661 gacattcact ttggcaagca atcctgtact cgaaaagagt aacggaatta gcactaatgc
     3721 ttttaatttc atttcctttt ccctaaatta aatcaaacaa cgctttgcca aggtagtcat
     3781 tttcatcttt cacaccggca aaacaggcaa ataaaccact gccgatatga gtgatgtatt
     3841 cattcatttt atccacattg ccgagagcgt tctggatttt gataaattgc tccggacttt
     3901 gttggaaaga gacaaacaac aaccctgaat caaattgccc tttatcatca ataccgcttg
     3961 aataggagaa tgaacggcgt aggattttca gccccgtttt attggcaaga tgagcgtgtg
     4021 aaacttccgg aattactgca ttgccttttt cgtctttttt ggctaaatct aatttatcaa
     4081 attcgtgctg atgcccgatt ccggctccgg aatcacggtg acgaccgaag gtttcttctt
     4141 gggattggag atgggtgcga tcccaagttt ccaagaacat tttaacacgg cgaacggcta
     4201 aataagaacc gcctttgagc cagccctctt gttgcaccca taccgtattt tcctgatctt
     4261 ttaaactttc tgcgttggca gtgccgtctt taaaaccgaa taagttacga ggtgtgtctt
     4321 gattggcaaa ggagttaaac cccatttgcg accatttcat tttgatttca ccacgggcaa
     4381 cacgcaccaa attacgcaca gcgtggaaag ccacttgcgg atcgtctgca caggcttgaa
     4441 tgcaaatatc gccaccggtg tattctgctt gtagttgatc acgagggaaa tgcggtaaat
     4501 cattcagttc tttcggctta tgtttttcaa tgccgagctt tgtaaagaaa ttggcactga
     4561 cgccaaaagt aagagtgaga ttctgtgccg aaaggctatc tgcctcaccg gtatccgccg
     4621 gtggaacata agcattagca ctataaggtt tcacattttt gccaagcgtg aggttacggc
     4681 tatattccgt ccagttttga aacaatgttt ttactttggc aatgtcagtg gtgtctaaat
     4741 ccagcactaa aaagtagata tgtttttgtg cagggctaac aataccagct tgatgtttgc
     4801 cgtaaaagtc gtattgattt tgagattttt cagatatttg tcgtgattcc aaagcgaaag
     4861 caggagcaga caataagcct gctcctacta atgcggtatg ttttaaaaaa tcacggcgag
     4921 aagtggtttc tgccatcatt tttgctccac tatttattta aaagtacgcc aagttgagct
     4981 aacggctcgc ctaattggtt tacagcctct gctaacgctt taatatccgc ttttgacagt
     5041 ttgttataag gcacataatc ataaccggtt ttagatttat tgtgttttgc taacagcgca
     5101 ttgacagccg caaaacgaga gccgatttct gttgagagtt tggcatcaat ttgctctaat
     5161 tgcgttttaa aaatctcata gattttttct gcaccttcaa tattggcttt aaaatcgtaa
     5221 aggtcggttt tagagaaaat ttcttcttca ccggttactt tagtagtaga aacttcgttt
     5281 aataaatcta ccgcaccggt aatcatcggc tcaggggtaa cttctgcagt gggaattttc
     5341 gcacgcagct cttttacatc ttttaataat tgttctgccg ttgcttttgt gcctttagtg
     5401 gtgtttttct gccacaatac tttctcgatt ttatggaaac ctgaccaatc tttctcggtt
     5461 ttaccttctt cggctaaatc tgccagacgg gcatcaatac gagggtctaa atcgccaaaa
     5521 ctttctgcaa tcggttcaga acgttcaaaa tacattcttg caagcgggta aattttcttc
     5581 gctttttgca catcgccttt gtttaagtag ccgacaaatt tttccgtatc ggtaaccagt
     5641 tggtcaatct gttctaccac aaattgttta taagcctcgg tttccttagt taagtctaaa
     5701 gctgccgctt gagtagccac aaaaaagcca gaaagtgcaa aagtgcaaaa gcaagtttgg
     5761 ttaaacgcat agaaatttcc ttttaataaa aatattgcga cataatatcc ttattgcgaa
     5821 ttattcgcaa aaaataatgc tgattttgtg atgtaaatca cattttgttt tgcaaattat
     5881 tgctaaaaat agaccgcttg cttatctaaa ttagagccat tacaatctgc tcaataatca
     5941 ataagatagg aatagtaatg agtagaacaa ccagcgtaac tttagctgag ccattaagcc
     6001 aatttgtgaa ccaaatggtt gaaagtgggc gttatggttc gaccaacgag gtcatcagtg
     6061 ccgcattaaa aatattggaa gcacaagaac agcaactaat tcagctaaga gccttaattg
     6121 atgaaggctt agaaagcggt gtttctgagg aaaccgttca atctattatc agcaaggcaa
     6181 aacgtaatgt ataaactttc tgttagggca gagcgagatt tagcgttact ttattcgccc
     6241 tttgttacgc tgtcattacc accgctcaca ttctatttat tataaaccaa tcccaaaagg
     6301 tatctttatt gttagggtgt tagatccaag aatggatcaa tataagcagt tacaataaat
     6361 ttgcaaaaat cccgataaaa acgaccgctt gcttgtgcta aaataaaccg attttttaag
     6421 acaggatttt ctatgagcaa gcaaggcaaa ccctttatcc tccattctcc tttcaagccc
     6481 tccggcgacc aaccaagtgc gattgccaaa ttgaccgaag gcttaaatga cggcttggca
     6541 catcaaacct tacttggcgt aaccggctcg gggaaaacct ttaccattgc taatgtgatt
     6601 gccaagctca atcgcccggc gatggtgctt gccccgaata aaacccttgc cgcccagctt
     6661 tatgccgaga tgaaagcgtt ctttccggaa aatgcggtgg agtatttcgt ctcttactat
     6721 gattactacc agcccgaagc ctatgtgccg gcaagcgata cctttatcga gaaagatgcc
     6781 tctatcaatg agcagatcga gcaaatgcga ctttccgcaa ccaaatcctt tttggaacgc
     6841 cgagatacga ttgtagtggc gtccgtttct gccatttacg gcttgggtga tgtggacgct
     6901 tatatgcaga tgatgttgca tttgcaagtg ggggcgatga ttgggcagcg tgaaattctc
     6961 tctcgccttg ccgaattgca atatactcgc aacgatcagg cgttccaacg ttcgactttc
     7021 cgagtgcggg gcgatgtgat tgatatttac cctgccgaaa gcgatgaagt agcgttaagg
     7081 gtagagctgt ttgacgatga aatcgaaaat ctgtcgctgt ttgatccgct tacagggcat
     7141 agcttgggca aggtgcctcg ctataccatt tacccgaaaa ctcactatgt gacccctcgg
     7201 gaacggattt tggaggcaat cgagcaaatt aaggtcgagc ttgccgaccg tcgcacctat
     7261 ttcatcaaag agaataaatt gctggaagag cagcggatcg cccaacgtac gcagtttgat
     7321 attgagatga tgaacgagct gggctactgt tcgggcattg aaaactactc acgctatctc
     7381 tcgggcagaa aagagggcga agcccctccg accctgtttg attatatgcc ggcggacggt
     7441 attttggtga ttgatgaaag ccacgttact gtgccacaaa ttggcggaat gtatcgaggc
     7501 gaccgagcga gaaaagaaac attggtgcaa tacggtttcc gtctgccgtc tgcactggat
     7561 aaccgcccgt tgagatttga agagtttgaa cgtctttcac cacagacgat ttacgtttct
     7621 gccacaccgg gggcgtatga attggagaaa aatcccgatg tggtggatca agtagttcgt
     7681 ccaaccggct tgctcgatcc gattatcgaa gttcgccccg ttgctacgca ggtggacgat
     7741 ttactgtctg aaattcacaa acgagtggcg gtggacgaac gggtgctggt gacaacactc
     7801 accaaaaaaa tggcggaaga tctcaccgat tatttggacg aacatggcgt acgagttcgt
     7861 tatctacata gcgacattga cacggtggaa cgggtcgaaa ttatccacga tttacgaatg
     7921 ggaatgtttg atgtgctggt ggggatcaac ttattgcgtg agggcttaga tatgcccgaa
     7981 gtgtcgctgg ttgccattct tgatgcggat aaagagggat ttttacgttc cgaacgctcg
     8041 ttaattcaga ccatcggacg tgccgcccga aacctcaacg gaaaagcgat tttatacggc
     8101 gaccgcatta ccaactcaat gcaaaaagca attactgaga ccgaacgccg ccgtgaaaag
     8161 cagatgaaat acaacgaaga acacggcatc acgccacaag cgttgaacaa aaaagtgggt
     8221 gaattgctcg acatcggaca atccgacaag ccaaaacggg gcaaacaagc ggtcaaaaaa
     8281 gccgaaaatt ctgcaaccga ctacaagccg aaatcccgta aagaactgga aaaagagctt
     8341 aaaacgctgg aacaacaaat gcgtgatttt gcgaaagatc tggaatttga aaaagcggct
     8401 gcggtaaggg ataagttgca gcatttaaag gcgtatttgt tggaggttta aatatgattt
     8461 ctcgttcatt attttcaaaa ttaatcttat ttgccaaaat tgttattttc tctcaacttg
     8521 tttttatggt ggttatctgg attgcccacc atattatgcg ggagtacagt aatccgtttg
     8581 aacgatttgg taccctgttc aataatgtgt ttttgacttt tattattccg atgatggtaa
     8641 gtagtgcggt tattgtttat aaaggttata cccagaaaaa tgaagataaa gtgttttgga
     8701 tttatatggg gttcttttta atttggattt tgggatttat ttattttgag ccggcagttt
     8761 atgataaatc actgaagatt tcaggtgcag gatttggggc tatgctctct attatcattt
     8821 gctcgaagtt attgcctaag gaaacaaata aagagcagct ctaagattct tgtgaagaaa
     8881 tctgttttct cggaggaaga aaatgctttt tgatagccat atccaccctg aggggttttc
     8941 agatcaagat gatgaccgga agtagccatt atgttgaatt attttgcaaa ttttagcact
     9001 aagtcgaccg cttgtttggt acgagcgagg aagctcgcac catcgggtaa acagatttgc
     9061 aaaaaagtta caaaatccga ccgcttactt gagcttattg attgcccaat ctaatcccga
     9121 atggaaatct tccgttaggc tcggtctgag ttgttccagt agttcaatta agccgttttt
     9181 atcggtgtga gtgaggttga tatgcccaac ttttctacca gctcggactt ctttgccata
     9241 ccaatgtagt tggctaaatg ggaggcttag ccactgcttg ttatgttcaa tgcctattaa
     9301 attaaccatc acgcttgggg caatttggtc gagtgctggc gtaggtagat ctaataatgc
     9361 ccgtaaatgt aactcaaatt ggctaatggc acagccgagt tgtgtccagt gtccgctgtt
     9421 atgcactcga ggggcaagct cgttgatgag tagcttgtcg cccacaacaa agcattccat
     9481 tgccattacg ccgacatact ctaatttttg cattaccgta gcgagcatct gttcggcttg
     9541 ctgctggtag agggcttggt tcggtaaatt cacatcggag acggagtaac gtagaatgcc
     9601 gttttgttgt aaattgtgag aaatagggta gaaacgggtt gagccgtcac ggaatctcgc
     9661 cccaacaatg gaaatttccc cctcaaacgg gataaatttt tcggcaatca cttcgccaaa
     9721 taattcaggt gtaatttgat gaatcgagtc ttgcgttaca atccattgcc cacgtccgtc
     9781 atatcctccg gttcggcgtt taaccactac tttttcgcca atatgctgaa aaatatcttg
     9841 ccaatgttcg gcattttcta gcagttgcca ttttgaagtc gcaagatgga gttcatcaag
     9901 tagtgatttt tgcgtaaaac gatcggctaa cttcccaaaa acattcaggt tcacaaaatt
     9961 cgggtggtta ccgagtaatt gcgttaaagg cgtatctgcc caacgttcga tttctgcggt
    10021 aataatgctg tttggctcaa tatcaaacac aggggcatcg aaagccagcg gtttgacttc
    10081 aatatcaagt ggtgctccgg cgtagcgtag cattctcccg agctggccgt tgcctaatac
    10141 atacacaggt gggtagattg cacttttttg catcgtggta ttctcaatgg gttagaaata
    10201 gtctgatagt ggtttgtcta aggtttggct gagtaagacc ataagtttaa tgcgagcttt
    10261 ttgcccactt aagcctttgg taaaaataat gcctttttgc tttaactgtt ttccaccgcc
    10321 tacataatca tagacatctt gggtaatacc attgaatgcc cgagaaacaa ttacaattgg
    10381 aatattggca ttcactaaag cctcaatacc agccagacaa ctagggggta aattacctgc
    10441 acccaatgcc tcaatcacaa caccatcgca tttgcttttc gctaattgtt ccagcagaaa
    10501 actatccatt ccggcgtatg ctttcagtag ttgcacgtta gctttagtta cttgttgaat
    10561 tggataacgt tcgtaagtgg tcaatttttg gaaaaaaatg acagattctt tcgttactaa
    10621 gccacaaggc ccaaaggttg gggtttggaa agtcgccaca ttagtggtgt gggttttggt
    10681 cacaaattta gcattgtgga tttcatcatt catcaccact aacacgcctt tatctcggct
    10741 ttcttcattt aacgccacta aaatcgcact ttgtagattg attaagccat cagcacccag
    10801 ttcgttactg gaacgcattg ctccggtaat tactaccggt atatttacgc tgagggctaa
    10861 atccagaaaa taggaggttt cttccaaggt atctgtgccg tgggtgatta ctacgccatc
    10921 gacattctcc tcattcactg ccttttcaat ccgcattttt aactgttgcc aatgctcgat
    10981 attgatatgc ggagagggaa tattaaataa cgattcttgc gccaattttg ctgggtggtt
    11041 taaacgttct aaggcagcca agagaggatt ttcattggaa ggggagacct taccgtcttc
    11101 cccttctttc attgaaatag taccaccagt gtggaggatt aataattttt tagacatctt
    11161 ttatacaata gttattcaac acgaggatca ggattatcta ataccatctg agtttgggtt
    11221 tgacggaaaa tacgcagttt ctctgcaata tcagggttaa aggctgctaa aatttgagcg
    11281 gctaataagc ctgcatttgc tgcacctgcc ggcccgattg cgagcgtacc gaccggaata
    11341 cctttcggca tttgcacaat cgaatagagg ctatctacac cacttaacat tgagcttttt
    11401 accggcacac ctaacaccgg cacaatggtt ttagcagcga tcattccggg caagtgagct
    11461 gcaccgccgg ctccggcaat aatcacttta tagccgttag tctctgcagt ttcagcaaaa
    11521 gaaaagagtt tgtccggtgt gcggtgtgct gagacgactt caacgtgata gctcaaaccg
    11581 aactggtcta atatttgggt tgcttcagac attgtagccc aatcactctt agatcccatt
    11641 acgatcgcaa tttcagcttt atttggcatt ttaaatcctt atgatactaa tgtaaaacag
    11701 tgtaatcata gcatacaaag caaacgtttg cgtagctatt taagaagtga aaagcaattt
    11761 ttagggctgt tatctgctgg ttaaaatatg atataatcga caaccatttt attttttata
    11821 aatttaatca tcggagatat aaatgacgag tagtataaac aaacgttcgg taatgactct
    11881 tttttcggat aaaaatgata tttacagcca ccaagtgcgt attgtgttag cagaaaaagg
    11941 ggtgccttat gaaatagaga acgttatgct aggcagtatt tctgaagatt tattagaatt
    12001 gaatccttac ggtaatattc ctacattggt tgatcgtgaa ttagtgctgt ttaaccctcg
    12061 tattattatg gaatatttag atgagcgttt ccctcaccca ccattaatgc cggtttaccc
    12121 tgtttctcgt ggtcagtgcc gtttaaatat gtatcgtatt gaacaagatt ggtattcgca
    12181 aattgatatt gtgaataaag atcctgaatc agcggaaggc aagaaagcgt tagcacagct
    12241 taaagaagat gtattggcat tagcgcctat ttttgccgct aaaccttatt ttatgagcga
    12301 tgatttcagc ttggttgatt gctatattgc accgttatta tggcgtatgc aaatcttagg
    12361 cgttaaattc agcggtgcaa cggcaaaacc aattaatgcg tatatgaccc gtgtattcca
    12421 acgtgatagt tttatccagt ctgttggcgg cgaagcgcca aaacatttaa tggacgataa
    12481 agactaatga aaccattaag accttatctt tataatgcct actataactg gattattgat
    12541 agcgataaca cgccttactt attagtgaat gcagaatttc cagacgtaga tgtgccggta
    12601 gagtttgtca aagaagggaa gattatttta aatatttcgc ctcgttccat cgggcagtat
    12661 attgtggctg atgaatacat tagctttagc gctcgttttc agggaatgtt aagagatatt
    12721 tatattcctt ttggggcaat ggtggcgatt tatgcgcaag aaaccggtga tggtattatg
    12781 ttccaagaag aagcctacta cactgaagag gcttatcaag ctcgagttag agcagtagag
    12841 cagcctaaaa aaatcaaggc gaagaaaaca tctaccttaa agttggtgaa ataagagatc
    12901 tatttcatca aaacacatta caagcggtta aatttttctg attatttgca aatatcagtc
    12961 aaaatttaac cgcttgtttg ttttgtgacg gaaataatca aattccactt gcactccgac
    13021 taaaaattgc ttatctttgt tttgtgtttg tactgttgtg atagtacagt aatgatctta
    13081 aggagagaaa atgaaattcc ataaaacctt attagtgact ttgttaagtt cactttctgt
    13141 agcggcatta gctcaagata aaattcaaaa tgtagcaatt acagcgattg tggaacaccc
    13201 tgcattagat tcaattcgta aaggtgtgat tgaagaatta gcccgagaag ggtttgttga
    13261 tggtaaaaac attaaaatcg actatcagtc tgcacagggt agtactgcaa cagcagcaca
    13321 aattgcgcgt aaatttgttg gggataaagc agatattatt atcccgatca ccacaccttc
    13381 ggcacaacct gttgttgctg caacacgttc tatcccaatt gtgttttcag gcgtgacaga
    13441 cccggttgct gcaaaattag taaaatcgtg ggagccaagt ggcactaacg tgacggggat
    13501 ttcagaccac aaagcgatgg ctccacaagt gaaattaatt caaacattag taccggattt
    13561 gaaagctgtt ggttatgtgt atagtgcagg tgaagttaat tctgcgattg tgttagaaga
    13621 gttaaaacaa gaggctcaaa aacagggctt tactatagtg ccggttgctg ttcaacgcag
    13681 tgccgatatt ggcactgctg ctcgcagcct aaacggaaaa gtgcaggcta tttatatttc
    13741 tgaagataat gcagttgttt cggcttatga agccttacat aaagcggctt tagaagcaaa
    13801 aattccggtg attgctgctg accgtgatac agtacaacgt ggtgcagtgg cagcttatgc
    13861 ggttaatcaa tatgatattg gtgtggcaac cggtaaagtt gctgctcgtg tattaaaagg
    13921 ggaaaaagca ggtacaattc caatccaaga agtcagcaaa ttagagcttt caattaatac
    13981 taaaacggca aaagaattgg gcattactat accagaggta ttaatcaaag aagctaaaca
    14041 aactttttag tgtaaaaaat aaaaatttgt tttatttgtc ataatcttgt agagtaaaaa
    14101 ttcatttcaa ctcagctaag gagaatatta tgggatggat tgctgcaatt attgttggcg
    14161 ctataattgg ttggatagct tcggctgtaa tgaaaagtga aggcggactt tgcaaaaata
    14221 ttattattgg tattttgggt tcgtcacttg gacgctgggt atttggtgat gtattaggta
    14281 ttggttccgc ttatagtgcc ggagacttta atatagtcgg tatctttttt ggtgtattag
    14341 gggcagctct tttgattttc attttgagaa aattaagcat aattaactaa tttcgtattt
    14401 cagaaaggaa gcagttgttt tataactgct tcttttttgt taaatatact ctttttgctc
    14461 ttgcatcagt tgtgtgaaaa aatcaattag gattcgcact ttaggagaga gataacgacg
    14521 gtttggatag agtaagctga tttgtaaagg ttcctgtgtc aaaaaaggca taataggaat
    14581 caactctccg ttttttagct cgtgttttat taaaaacttt ggaatgttaa tgatgcccaa
    14641 accagctttt gccatttgta ctaacgcata accattgtta ctgtaaattt taccttgtgg
    14701 tttaatttgc attttttgtc cttgttgaga aaattgccat tgaggatggt attcatagag
    14761 taggcagtct cgttccacta atgcttctaa gcctttaggt tcgccaaatc gagctaaata
    14821 atctggagaa gcaactaaaa ccaaatggga atctgcaatt tttttcgcta caatggaact
    14881 atctgcaagg ctaccaatac gcagcaccaa atcaaagcct tctgcaatca catctacccg
    14941 acggtcacta aattcaatat gaagggctaa attagggtaa tcttccataa atttcccaag
    15001 gtaaggggca atgaagcgag agccaaaatc cattggtaca gacattgtta ttttcccttg
    15061 tagcgttgag ttaatattac ttacgctggc atcggcctct tttagttcat ttaaaatagg
    15121 caagcattgc tgatagtaga gcaaccctgc ctcagttggc gtaatttttc gagtggttcg
    15181 ttgtagtaaa cgcacattga gatgttcttc taactgagcc accaatttac ttgccatggg
    15241 taacgaaatt tgagcttgtt gtgctgcttg agtgaaactt tgggtttcaa ttactttaca
    15301 aaataaactg attgcgttta gtttatccat tttctctctt ctttatattg taatttgtgt
    15361 taaggcttgc tatcgtaaaa atagtgtcta aaaaaatcaa cttaaaaaga aataatttca
    15421 aacaatttaa aataattatt aaaaattagg taataaatta tgggaaaatc actagttatt
    15481 gtggagtctc cggctaaggc aaaaaaaatt aaccaatatc ttggtagtaa ttatgtggtg
    15541 aaatcgagtg tggggcatat tcgtgattta ccgaaaagtg gtagtgatga aaaaacggaa
    15601 aaagcgaaac cgatttcaac caaagggctg accgctgccg aaaaagctaa aatcaaagca
    15661 gaaaaagagc gtgttgcatt ggttaaacgt atgggtatcg acccctataa tggctggaaa
    15721 gctaactatc agattttgcc ggataaagag aaagtggttt ccgagctaaa atcgttggca
    15781 aagaaagcag atcatatcta tctggcaacc gacttggata gagaagggga ggcgattgcg
    15841 tggcatttgc gtgaaatcat tggtggtgat gacagccgtt ttagccgagt ggtatttaat
    15901 gaaatcacca aagatgcgat caaaaaggct tttgacgatc cgcaaccgct caatattgac
    15961 cgtgtaaatt cccagcaaac ccgccgcttt ttagaccgtg tagtgggctt tatggtgtcg
    16021 ccattattat ggaaaaaagt agctcgtggt ttatcggcag ggcgtgtgca atcggttgcc
    16081 gtaaaattac tggttgagcg tgagcgtgaa atcaaggcgt tccaaagcga ggagttttgg
    16141 actattcttg ccaatacgca aattaatcgt aaaaaattac cgcttgaatt aactacttat
    16201 aaaggtaaaa aattctcggc aagcaatgag gctgaagcaa atgttgcagt gcgtgctttg
    16261 gagcagagcg attttattgt ttctaatatt gaagccaaag aaaccagctc tcgagctgct
    16321 gcaccattta ttacctcatc gttacaacgt gccgctagca ctcgtttagg ttttggggtt
    16381 aaaaagacga tgatgttagc ccaacggtta tatgaagcgg gttacatcac ctatatgcgt
    16441 actgattcaa ccaaccttag ccgtgaagca ttagcaatgg ctcgaggtta tattcaggat
    16501 aatttcgggg cgaattattt gccggaaaaa gcaaatgtgt atcgcagtaa agataatgcc
    16561 caagaagctc acgaagccat tcgcccgtcg gatgtgaatg tcaaaatggc ggatttaaaa
    16621 ggaatggata aagatgccga gcgtttatac gatttaattt ggcgtcgttt cttggcgtgt
    16681 caaatgttgc ctgctcgtta tgattctacc gcagtcacag tgtctgccgg agactatgaa
    16741 ctcaaagcaa acgggcgtgt actgcgtttt gacggctgga cgaaagtact gccggtgcaa
    16801 ggcaaaaatc cggaagatca ggaattaccg gcggttgaac tgcatcaaaa attaacgctt
    16861 gatgaaattg tgccaagtca gcattttact aaaccgcctg cacgttttaa tgaggcgtct
    16921 ttggttgctg agttagaaga gcgaaaaatt ggccgccctt caacctatgc ttcaattatt
    16981 tcgacgattc aagaacgtgg ctatgttcgc accgaaaaca agcgttttta tgtggaaaaa
    17041 atcggtgaag tagtgacgga tcgcctcaac gaatcattca aagatttaat gaattatgat
    17101 ttcactgcca atatggaaga ggtgctcgac caaattgcag aggggtctaa aaattggaaa
    17161 gaagagttga atactttctt taaacatttc tctgaagagt tgagccaagc agaattagat
    17221 gaacttgaag gcggaatgaa accaaacagc cttgtgccaa ccgatattga ttgcccgact
    17281 tgtggacgaa aaatggcaat tcgcaccgct tccacagggg tatttttagg ttgcaccggc
    17341 tatgctttac cgccaaaaga gcgttgcaaa acgacaatga atttaattcc agaggcggaa
    17401 tttttcaatg tgttagattc ggattctgaa accaaagccc taatggctcg caagcgttgc
    17461 ccgaaatgcg attcggcaat ggatagttat gtgattgatg ctgaacgtaa attacacgtt
    17521 tgtggtaata atccaaattg tgatggtcat attattgagc aaggttcctt caaaattaaa
    17581 ggctatgacg gacctgtagt ggaatgcgat aaatgcggtt cagatatgca cttaaaactg
    17641 ggtcgtttcg gcaaatatat gggctgcaca agctgcgata acacccgtaa aattctgaaa
    17701 aacggggaag ttgctccgcc aaaagaagat cctattgctt ttcctgaatt aaaatgtgaa
    17761 aaagccgatg cctattttat attaagagac ggagcaagtg gggtgtttat gtcagctcat
    17821 aacttcccga aagtgcgtga aagccgtgca ccaaaagtgg tagagttagc tcaatatcgt
    17881 gaacgtttgc cggagaaatt gcagtatctt gccgatgctc cgcagcaaga tccggaagga
    17941 aacgaggcaa ttatccgttt tagtcgtaaa gagaaacgcc aatatgtgac ttctgagaaa
    18001 aacggcaaag ccaccaaatg gattgttgat tatctagacg gtaaatgggt tgagcgtaag
    18061 aaataaagct taaaagacaa gcggtaaaat tttctaaaaa ttttaccgct tgcttttaga
    18121 tgttctgagc gagtagttca tcaattgctt tacttaattt attgcgatcg tgtcggtaat
    18181 aaacgtcatt cgcagataag ttttttcgca agatttgaat atgttcggga agttcagaac
    18241 cggcatcatc agtcgtaatt accgcattaa ttctagcctg tccgatacag ttctccatcc
    18301 attcaattcg ctgattaagt gatagttgcc cagctgggcc atgttcttgt ccgatattgt
    18361 caataaatac tactcgggct ttgctttgag caatagagtt tgctatgcct gccaccagca
    18421 aattcggcat aatactggta aaaaagctac ctgggcctag cagtattaac tcagcacttt
    18481 gaatagctga aatggcttct ggtgtagcaa caaccatagt atctaacgct aaatgttgtg
    18541 gtgtttctgc taaagaatca atttgcactt caccaaatac tgattcgcct gaatgcaact
    18601 gtgcaattaa atgcaccggt atttcagaca ttgggataag ttgcgatctt acgtgcaata
    18661 attctcgcac caaattaatc ccttctagcg gtcggatttg catattttca agggcggtga
    18721 gaattaaatt gcctagatta tgtccagcga gttcgcctgt gccagcaaaa cgatactcaa
    18781 acaaccgaga agctatcgtt ggtttaacga taatttgatt taaacagttg cgtaaatctc
    18841 cccaagcaat caccccttgt tgtgaacgta ttctaccggt tgagcctcca ttatcggtag
    18901 tggcaacaat gccggtaagc cgttccttta aaaaagagag cgcggagagc aatcgaccta
    18961 agccgtggcc cccacctagt gcaacaactg cattgagttg gtttaaatag tgatgtcggg
    19021 taggtttaaa aggaataata tctgtatttt ccatcttggg atttcgttta tttttctaaa
    19081 ataatggcat ctgactgggc tgaaggcaat gcttgtaata cagctttaac caaagtcgct
    19141 aaaggaatcg caaaaaacac tccccaaaag ccccataaac caccaaagat gagtacggca
    19201 ataataattg tcagagggtg tagatttact gcttcagaaa ataaaaaggg tacgagtaaa
    19261 tttccgtcta gcaactgact aataataaat gcgagcatta aatagtagaa atccggcgat
    19321 aacccgaact ggaatagagc aattaacatt accggaatgc tgactaaaac cgcaccgatg
    19381 tagggaacta acactgaaat ccctaccgct acagaaagta gtaacggata gcgtaaatca
    19441 aaaaagagga aaataatata agtgacaacc ccaacaatta gaatttctaa aaatttacct
    19501 cgaatatagt tggcaatttg ttgttgcatt tcaaaccata ctcgtgttgc aagtcgacgg
    19561 ttttgcggta atactttact aaaagaacgc attaaaacga ttttatcttt cagtaagaaa
    19621 aagaccatga gtgggactaa gaaggtgtaa atgcctaagc caactaagct gatgatagag
    19681 ttaatcgaga gtgttagaag tgattctccc atactcaaaa tattactttt agcggtattc
    19741 acaatggaat ctagggtcgc ataatctact aattcagggt aatgctccgg tagggcttgt
    19801 aaccaagcat tgagcagatt aaacatcgaa ggtaaatctt gaataaaggt aactgcttga
    19861 ttccaaaggc tgggtagtag tactacgcct aaaaaagata ataaagcgat gaaacctcct
    19921 agtactagaa tgacactcaa agttcgaggt aatttgagtt tgctcgacaa aaaacggatt
    19981 ggccattcca ataaataggc aaacacaagt gcaaccagaa ggggcataag cagatcgcta
    20041 aaaaaataga taataccgaa accgatcaat agaatactaa acagcacaac tatttgcggg
    20101 tcggtaaatt tttttcgata ccaatcttgc aacatttgaa acatatggat tgcctttaaa
    20161 ttatgcgatg aaaattattt ctggctacag actgcaatga accctagctt tttgtccggg
    20221 tcattaaata gtttgtacat tttattaaag gtttcgcgat tttctggttt taatgcattg
    20281 ccgataattt tcatggcgcc taaaacacct tcatcatgaa tcagaccttt aggggaaagt
    20341 agagacattt ctccggaaaa ggtatcaaca ttacggaaac cacaacgttg gaataatgat
    20401 ttccagtctg ctttagcaag tggagagaca gtgatattga ttgcatcacg caactcggct
    20461 aataaagtat cggagtcttt atcttggata acaatatcgt gcgttaataa aaagccattt
    20521 ggttttaata cacgaaaata ttcacgtatt gccttttctt tcgcttctag aggaagcatt
    20581 gtcagcatgg cttcattaat tacaatatca aaactttcgt cgtcaaatgg cagttttgtt
    20641 gcgttggcgc gctgtacttg aattaaatgc tcaacatggt tttctttgat atttttacgt
    20701 gctttttcaa gcgcatcttc gtctaaatca ataccaacaa tttggcattc aaattgttga
    20761 gctaattgga ttgcagtagt ccccatgtta caggcaactt cgagcacttt tttattttta
    20821 tcaaaatccc cgtttgcaat taaccaatca gttgctaatt tccccccggg gcgtaaacga
    20881 gttttgccta aacgagctaa aaaatgatga ccaacttctt cttttttcat aaaaacctct
    20941 ggatttgcaa aatacgttaa atatatgacc gcttgtattg tgatctatgt tcgttattat
    21001 actcaatttt ttcattttct tatatacaac atcaacagat tttgccagaa tacaacctca
    21061 ttttgatatg aggaaaatag aatgagtaag caaaagaatg attacctcca ccagcgaggt
    21121 caaattaaag aaagtgcagt aaaagcatta gtgactgatc cactttttag acaacgtgta
    21181 gaaagaaatc gtaaagggaa agggagctat cgcagacaag aaaaacacaa aaaaactatc
    21241 tatgggcaaa aagaaacccc atttaaaaat attcggttag agtcttttta aatggggttt
    21301 tatttgtagc ttattgtagt tttataagcc tgataaacac tatggtttac tgaaataggc
    21361 caacaacggt tctggatttt gaatataaga agaaagttct ttatgctctg ggtgacccat
    21421 atagggaatt tgcccaagta aaggcgcatt aattttttgt gtcagtagtt caattaattc
    21481 gtgataatgc cgtagccctg gatttactct gtttgcgacc caacttacta attttacacc
    21541 acgctgcaaa atttcattcg cagtaagtag tgcatggtta acacaacctt ccttaattcc
    21601 caccactaaa acaaccggca tattgttttg cattacccaa tcagcaaaat agtaatcctt
    21661 gttaatagga gttagccagc cataggttcc ttctacgaca acatttggat aggcattttc
    21721 tagtcgtttt aaatctgtgt ttaatttttc cagttgaata tgatgaactg catctaaagc
    21781 tgcaaataca ggggtactgg aatgaataaa agtatagcta ttaatatcac gatagctaac
    21841 attagttgga cagctatcta gtatggttaa tacgtctgaa ttatcttcag tagcataatc
    21901 atattgagta ggttctgtgg gtaatgaatc atcaccgcca caagcaatgg gtttatagcc
    21961 aattacagga aaactatgtt ttgtaagtgt ctgtatgatg gctcgggtaa ccacagtttt
    22021 ccctacgttg gtgtctgttc cggtaataaa taatgagggc ataaatggct cctttcgaaa
    22081 atatggctgg tagtttaacc aaaaatagat caatttattc tgtctttgat caaatttccg
    22141 tcataaattc cttgttttat tgctgaacag gcaattaatg gactattcca atcgtattgg
    22201 ctggtaacta aatcgatttt taggtttgtt tgtaacaaat ttttatgcaa tttttctgaa
    22261 atttgcgtaa ataacggctc ttttattttg atcaatggcg agtttagcat aattttttca
    22321 ctagaaaata tattaactaa attcattaat gcataagcta aattatcggt aatatgcgat
    22381 aaaatagcta atgcaagcgg ttgattttca tcaatttttt gacaaagcca gctgattttc
    22441 tgttcctgac tttttaaatt attaggcaaa taacgatcaa tgagtctcac aatagctggg
    22501 aacgtcacct gattgactaa tttatagcga tgaatttcat ctagttcagg gaatatttca
    22561 tcactgagat ggctaaatct aggcataagc atattatcaa cattcatctt tgattgttta
    22621 gacagtaaac taccactaag caatacactt agattcacag tatcatctaa ttgtagaaaa
    22681 atagcattat cttggttaat taatgagcca accgtagatt ctgcaagcaa ccacagctga
    22741 aaatgttcac ttaataaaat aggacaatga aacagcggcg agagtttaga tgtaatgtta
    22801 cagaatatat ttttgtttcc caattgagta atactgtctt tttctgcatt aattttaccg
    22861 atcacactaa tagatacagc caggagctga ctagtattaa cacaatatag ttggcggaaa
    22921 tttgtaataa agttaagaat aaaatcattt agcctaggat aattttctgc tgagattgta
    22981 taatcttgct tataaatttc tgcaccattg agtttacaaa gtgaaatttc aattttatga
    23041 gatgaaacag taacacaaag tagttgccaa aaaaaattag aaacagctaa tccaacggag
    23101 gggcgacctc tggataaagt agtctgaacc gtacgttcta aaatgaagtg gttatctatt
    23161 agtattttag tcagatttgt tactgaagct gggg
//
LOCUS       DANLRW010000032        22658 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.032, whole genome shotgun sequence.
ACCESSION   DANLRW010000032 DANLRW010000000
VERSION     DANLRW010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22658
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.032"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(130..1533)
                     /locus_tag="PXA71_001021"
     CDS             complement(130..1533)
                     /locus_tag="PXA71_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDL5105144.1"
                     /translation="MLTYTFNTQEGTALYEQLYRFLKNDIESNILIAGDKLPSKRAFA
                     KHLGISVMTVETAYQQLVAEGYVNTQPKKGFFVNALNLPEKKEAISVQLQKISSEQYE
                     KNKKWQADLTNRQTLAENFPFSVWTKLVREVLKTHQSELMERAESGGVWTLKFAIANH
                     LRAFRGMIVNPTQIIIGAGTEYLYGLLIQLLGLDKHYALTEPSYDKLRRIYHSYRLST
                     ATVSMPFSIDELNSKNVDVIHTSPSHHFPTGHVMPIAKRYELLAWVAQKAERYIVEDD
                     YDSEFRFVGQPIPALKSIDMLGRVIYMNTFSKTLSSTVRIAYMVLPPELLNRFQQELG
                     FYASTVSNFEQYILAEFIQQGYFEKHINRMRAYYQKKRDKLLKAFKQGNLAEKIAIKE
                     EHSGLHFIVQLNTTLTERQILQAAEEQGIKFVALSAYYQDKSQIQQNAFIIGYSNLKD
                     DQINYVAESLKKILDNE"
     gene            1744..2616
                     /gene="pdxS"
                     /locus_tag="PXA71_001022"
     CDS             1744..2616
                     /gene="pdxS"
                     /locus_tag="PXA71_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HDL5105145.1"
                     /translation="MTNRYDLNRQLAQMLKGGVIMDVTTPEQACIAEEAGACAVMALE
                     RIPADIRAAGGVSRMSDPKMIKSIQAAVSIPVMAKVRIGHVTEAQILQAIEIDYIDES
                     EVLSPADDTFHINKRKFEVPFVCGAKNLGEALRRINEGAAMIRSKGEPGTGNVVQAVH
                     HLRKMKQEIARLVSHTTDELYHVAKELQVPFDLVQYVHQYQKLPVVTFAAGGVATPAD
                     AALMMQLGAEGVFVGSGIFKSGDPAKRARAIVQAVTNYNDPKLLAELSEDLGEAMVGI
                     NEQEIELLMAARGV"
     gene            2616..3188
                     /gene="pdxT"
                     /locus_tag="PXA71_001023"
     CDS             2616..3188
                     /gene="pdxT"
                     /locus_tag="PXA71_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HDL5105146.1"
                     /translation="MKIAILALQGAFSEHTDKLQQLGVESMEIRQLADLNQDFDGLIL
                     PGGESTVQGKLLRELGLLEPLRQKILNGLPTLGTCAGLILLAENLVNDDKKHLATLPV
                     TVKRNAYGRQLGSFLVEEEVKYLGKIPLTFIRAPYIESTGKDVEILAKISGKIVGVKY
                     QNQIGISFHPEVNNDLSFHRYFVEMCRKNK"
     gene            3337..4287
                     /gene="tal"
                     /locus_tag="PXA71_001024"
     CDS             3337..4287
                     /gene="tal"
                     /locus_tag="PXA71_001024"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDL5105147.1"
                     /translation="MSQLDTLSKMTVIVADTGDIEAIKLYKPKDATTNPSLILSASAL
                     PQYAPLIEEAINYAKAQSSDKDQQLVDAEDKLAVNIGLEILKLVPGRISTEVDARFSY
                     DTEKTIAKARKLIGLYNDAGISNDRILIKIASTWQGIKAAEQLEKEGINCNLTLLFSQ
                     AQARACAEAGVYLISPFVGRILDWYKAHEGKEYAPAEDPGVISVTNIYNYYKQHGYDT
                     IVMGASFRNVGEIIELAGCDRLTISPPLLKELQESDEKLVCKLDYKGEIKPRPEKMTE
                     AEFYWEHNQEPMAVEKLAEGIRKFAIDQEKLEAMLAEKLQ"
     gene            complement(4349..4622)
                     /locus_tag="PXA71_001025"
                     /pseudo
     CDS             complement(4349..4622)
                     /locus_tag="PXA71_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599987.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
     gene            complement(4653..5117)
                     /locus_tag="PXA71_001026"
     CDS             complement(4653..5117)
                     /locus_tag="PXA71_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL5105148.1"
                     /translation="MKKLALAVALMSSFALVGCANTDVFSGSVYSGEQAKEARSIAYG
                     TIVSVRDVKIQARSEGVIGTVGGGVLGGVAGNAIGGGTGQAIATAVGAVAGAVIGNQV
                     EQKASQVSSLEMVIRKDDGKEIVVVQKKEDGFVPGKRVRIVGSNSDLNVSLL"
     gene            complement(5138..5737)
                     /locus_tag="PXA71_001027"
     CDS             complement(5138..5737)
                     /locus_tag="PXA71_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5105149.1"
                     /translation="MDKIIAENAKFFEKMTACFGDLSQFEQKIRQIAEIAGIDLAAYE
                     IDHLAVRMNQTETAEQWKILLLDGATLLKESEVNGRPIGLFALIQAVEFCGQFVKIVE
                     LPFPKNKVYLEEGWEHIELVFPMLDNESSEQWVSRALSHFRLADNSEIKLKISQPQVE
                     GERLPNPSIAISLRNVTFCNPYCLKLHPYDIKSVIMSEN"
     gene            5771..7498
                     /gene="argS"
                     /locus_tag="PXA71_001028"
     CDS             5771..7498
                     /gene="argS"
                     /locus_tag="PXA71_001028"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDL5105150.1"
                     /translation="MNIQQILSDKIKQAMVASGADSNVEPLVRQSGKPEFGDYQANGA
                     MGAAKKLGMNPREFAQKILENADLNGIADKLEIAGPGFINIFLNPEWLAENTNSSLQA
                     VNFGIKTANPQTIVIDYSSPNVAKEMHVGHLRSTIIGDAVVRTLAFLGNNVIRANHVG
                     DWGTQFGMLIAYLEKMENEHASEMELSDLEAFYRAAKEHYDSDEAFAEKARNYVVKLQ
                     SGDKYCLTMWKKLVDITMHHNQENYNRLNVTLTEKDVMGESLYNPMLPEIVADLKAKG
                     LAVEDDGALVVFLDEFKNKDGDPMGVIVQKKDGGFLYTTTDIAAAKYRYETLKADRAL
                     VFSDSRQAQHMQQAWLITRKAGYVPDSFSLEHPFFGMMLGKDGKPFKTRSGGTVKLKD
                     LLDEAVERADKLIAERSTELTAEEKAAVVEAVAIGSVKYSDLSKNRTTDYVFDWDNML
                     TFEGNTAPYMQYAYTRIRSIFARANIDENALSGSIQLNEPKERALAVKLLQFEEALNG
                     VAKEGMPHILCQYLYELAGSFSSFYEACPILNAEETTKNSRLKLAALTAKTLKQGLDL
                     LGIKTVEKM"
     gene            7688..8854
                     /gene="cgtA"
                     /locus_tag="PXA71_001029"
     CDS             7688..8854
                     /gene="cgtA"
                     /locus_tag="PXA71_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HDL5105151.1"
                     /translation="MKFIDEALIRVEAGDGGNGCVSFRREKFIPKGGPDGGDGGDGGD
                     VYLIADENLNTLIDYRFEKRYAAGRGENGRSAGCTGHRGQDITLRVPVGTRAIDNDTQ
                     EIIGDLTRHGMKMLVAKGGYHGLGNTRFKSSVNRAPRQKTNGTPGEKRDLKLELLLLA
                     DVGMLGLPNAGKSTFIRSVSAAKPKVADYPFTTLVPSLGVARVGADRSFVVADIPGLI
                     EGAADGAGLGIRFLKHLERCRILIHLVDIMPIDESDPAHNISVIESELYQYSEKLAEK
                     PIWLVFNKIDTIGEEEAAERAKDIAEQIGWEGDYYLISAATGQNVQALTRDIMDFIEA
                     NPREVEEENKAPEEVKFKWEDYHNEAMQNAVEEDWDDDWSEEDDEGIEFIYERH"
     gene            8939..9556
                     /locus_tag="PXA71_001030"
     CDS             8939..9556
                     /locus_tag="PXA71_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate 1-dehydrogenase family
                     protein"
                     /protein_id="HDL5105152.1"
                     /translation="MLSSTSCDLFNIPFFQFAQMKKYCPEEIPRIKAEYKTQWEIWKK
                     LHQEVSRQLGQPFAPPHIEKWCNGWQVRAHFFAYYKYEFNRNSAAILSVILNRRRLQV
                     SLDWHCYRADRSQINVHQYNQWWENLDREKFADFEIWHGSESEYDDFRTVSQMSEQAF
                     TLTNEEDFWCIGKNVEKDDLDNIDVVEFIYQTIRALLPLYEKCHQ"
     gene            complement(9603..11561)
                     /locus_tag="PXA71_001031"
     CDS             complement(9603..11561)
                     /locus_tag="PXA71_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HDL5105153.1"
                     /translation="MIAELGNYTLALALAISILLAVLPLWGAEKQNSTLIALARPMTW
                     AMFLALTVSFGSLFYLFAVNDFTVQYVVNNSNSRLPLQYRLSAVWGAHEGSLLLWVWL
                     LSLWSVGVATFTRKMPEDAVARVLGLMGVIGIGFLMFVIFTSNPFDRTFPNFPIDGKE
                     LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVF
                     LTLGIVLGSWWAYYELGWGGWWFWDPVENASLMPWLAGTALIHSLAVTEKRGTFKAWT
                     VLLAILAFSLCLVGTFLVRSGILVSVHAFASDPTRGLYILAYLVLVVGGSLLLYAFKG
                     SEIKSLDNYERYSRETMLLINNILLMAFLSVVFLGTLLPLIHKQIGLGTISIGAPFFD
                     QMFLILMVPFSFVLGIGPLVKWRRDQVSAIRKPVIIATILMALLGFGLPYLFRNTITV
                     SVVLGTMMSVFIVLLSLYELHQRATHRHSFLSGIFKLSRSHWGMVLAHLGVAMTVFGI
                     AFSQNFSIERDVRMNVGDKAEILDYQFEFKGIKITDGANYQGGTAELEITRNGKYEAT
                     LNAEKRFYTVSRMGMTEAAIDWGFTRDLYAALGEKLEDNSWAVRLYYKPFIRWIWIGG
                     LFMALGGLLCMLDKRYRLRIENKKEVIA"
     gene            complement(11558..12115)
                     /gene="ccmE"
                     /locus_tag="PXA71_001032"
     CDS             complement(11558..12115)
                     /gene="ccmE"
                     /locus_tag="PXA71_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HDL5105154.1"
                     /translation="MNPRRKSRLKVVVSILLGLSVAAGLTLYALSQNIDLFYTPSEIV
                     NGKNDDPKQKPEVGQRIRVGGMVVEDTVKRDDKSLKVVFDLNDIGPSITVEYEGILPD
                     LFREGQGIVAQGVLIEPTRLKATEVLAKHDENYMPPELGDKLKEQHKKSGVSEQDLKG
                     ESETDRKMKAEAEAEKANNVQGESK"
     gene            complement(12301..12498)
                     /gene="ccmD"
                     /locus_tag="PXA71_001033"
     CDS             complement(12301..12498)
                     /gene="ccmD"
                     /locus_tag="PXA71_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HDL5105155.1"
                     /translation="MTFQFESISDFFAMGGYGFYVWLSYGVSFIAMIGLIWLSRREQK
                     AILAQAKKEIVREEKLKQTSQ"
     gene            complement(12513..13250)
                     /locus_tag="PXA71_001034"
     CDS             complement(12513..13250)
                     /locus_tag="PXA71_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter permease"
                     /protein_id="HDL5105156.1"
                     /translation="MWKWLHPYAKSETQYHLLGKIQPFLGWLSLIMLAAAFVWGLAFA
                     PKDYQQGDSYRIIFIHVPAAIWSMGVYGSMAVAGLVALVWQIRQANLAMISMAPIGLV
                     FAFISLATGAIWGKPMWGTWWVWDARLTSALVLFFLYIGVMALYSAFQDRQTGAKAAA
                     VLSVVGVINLPIIHFSVEWWNTLHQGATITKFDKPSMAVEMLIPLLLAIFGSLIFTAW
                     FSIWRYRIALLKDERNRPWVKQLAKSV"
     gene            complement(13450..14112)
                     /gene="ccmB"
                     /locus_tag="PXA71_001035"
     CDS             complement(13450..14112)
                     /gene="ccmB"
                     /locus_tag="PXA71_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005565617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HDL5105157.1"
                     /translation="MILLTIIQRELTIAFRKPSEILNPLWFFLMVITVFPILMGPNPE
                     LLGKIAGGIAWVAALLSALLSFERLFRDDYLDGSLEQLMLLPLALPQVALAKVIAHWL
                     LTGLPLILLSPIAAILLSLETHVWWALVLTLLLGTPILSCLGAIGVALTVGLRKGGTL
                     LSLLILPLFLPVLIFAAAVLEAATLNMGYSGQLAIIGAILAVTLTFSPFAIAGALRIS
                     LN"
     gene            complement(14109..14750)
                     /gene="ccmA"
                     /locus_tag="PXA71_001036"
     CDS             complement(14109..14750)
                     /gene="ccmA"
                     /locus_tag="PXA71_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HDL5105158.1"
                     /translation="MNQTAQYQLKLNQIACERGETRLFEGCSFTVQSGEWVQIEGHNG
                     IGKTSLLRILAGLFLPAEGEVLWNDIAIQKQRDHYYSELFYLGHYSGVKPELTPWENL
                     RFYQKIQQLPQDDDALWHALTKVSLIGREDLPCSHLSAGQQRRVALAKLWLTNAKLWI
                     LDEPFTAIDKKGVADLIAHIEQHCEQGRLVIFTSHQAAESDKVRIISLDQFKV"
     gene            complement(14894..15604)
                     /gene="hda"
                     /locus_tag="PXA71_001037"
     CDS             complement(14894..15604)
                     /gene="hda"
                     /locus_tag="PXA71_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA regulatory inactivator Hda"
                     /protein_id="HDL5105159.1"
                     /translation="MQLPLPIHQIDEDTFDNFYSQNSEVLLGSLKRNFTDVQQPFFYI
                     WGGKSCGKSHLLKAVSNHFLLNNQTSSYIPLTKANYFSPLVLDNAELLNVICLDDIQA
                     IAGDAEWELAIFNLFNQIREQQGLFNEGQKTLLLISADCPPHQLNIQLPDLRSRLTWG
                     EVYQLNDLTDEQKCQILQLNAHQKGVELSDEVAHFLLKKAGTDLEQLSKILDKLDKAS
                     LQAQRKLTIPFVKEILSL"
     gene            15874..17475
                     /locus_tag="PXA71_001038"
     CDS             15874..17475
                     /locus_tag="PXA71_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5105160.1"
                     /translation="MKNMTKLSLITLALAASSSVFAAPKTFVYCLEASPSALSPVLST
                     DGASFDVNALPIYNKLTDFEDGTTNVIPSLAEKWDISEDGKTYTFHLRKGVKFHDNKE
                     FKPSRELNADDVVFSINRQFDPNHPFHKVSGGNYEYFIGMDMQNIIDKVEKVDDHTVK
                     ISLKVPNAPFLANLAMDFNAVYSAEYAEQSLKAGKPERIDTNPIGSGPFQFVDYQKDA
                     TVRYKAFENYWQGTAKIDRLVFAITPDASVRLAKLQKGECHAMPYPNPADIEDLKKDP
                     NIELMSQSGMNIGYLALNSSIKPLDNQKVRQALNHAVNKQAIVDAVYQGAGQVAKNPI
                     PPTMWSYNEAVQDYDYNPEKAKALLKEAGFENGFDTELWAMPVSRPYNPNARRMAELI
                     QEDWKKVGVNAKIVSYEWGEYLKRLRQGEAATSMIGWTGDNGDPDNFLNTLLSCSAVE
                     AGSNYAKFCHKPFEEVVLGAAQESDKAKRTELYKQAQVIFKEQAPWITIAHSTVYFPV
                     RKEVKGYVMSPFSLHNFYKVDLADK"
     gene            17747..18751
                     /locus_tag="PXA71_001039"
     CDS             17747..18751
                     /locus_tag="PXA71_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5105161.1"
                     /translation="MFSFILKRVLMVIPTFIAITLITFALVHFIPGDPIEIRMGERGL
                     SPEVHQQMMEQLGLNRPLFEQYISYIKGVLHGDLGNSFRNNEPVLKEFFTLFPATVEL
                     AFFALLWSLIFGIILGVIAAVKKESWISHTVTTLSLTGYSMPIFWWGLILILYFSTPL
                     GLPASGRLPSEYWIEAETGFMLIDTWNSDEPGAFLAAIKSLILPSIVLGTIPLAVVTR
                     MTRSSMLEVLGEDYIRTAKAKGLNTTRIVIVHALRNALIPVVTVVGLIVGQLLSGAVL
                     TENIFSWPGIGKWIIDAINSRDYPVLQGSVLIIATIIILVNLTVDLLYGIVNPRIRHS
                     "
     gene            18853..19746
                     /locus_tag="PXA71_001040"
     CDS             18853..19746
                     /locus_tag="PXA71_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5105162.1"
                     /translation="MSGITAVNPPAPKTPLQEFWYYFCQNRGALIGLTFIAIVFVACV
                     FAPWVAPFDPIEQNRSALLLPPAWLEGGNSAHLLGTDDIGRDILSRIIYGSRLSVFIG
                     LVIVLLSCVFGVILGLLAGYYGGTLDIIIMRFVDIMLAIPSLLLTIGVVTILGPSLIN
                     AAIAIAIVSIPSYVRLTRASVLSEKNRDYVTASRVAGASVLRLMFVVILPNCLAPLIV
                     QMTMGISNAILELAALGFLGIGAQPPTPELGTMLAESRGFMQSANWLVTIPGLAILSL
                     VLAFNLMGDGLRDALDPKLKQ"
     gene            19757..20746
                     /gene="dppD"
                     /locus_tag="PXA71_001041"
     CDS             19757..20746
                     /gene="dppD"
                     /locus_tag="PXA71_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HDL5105163.1"
                     /translation="MALLTVDQLSVHFGETKTPFKAVDRISYEVNEGEVLGIVGESGS
                     GKSVSSLAIMGLIDFPGRVMAEKLYFNGNDLLALKPKEKQQIVGADVSMIFQDAMTSL
                     NPSYTVGYQIMEALKVHQGGSKASRRERAIELLTMVGIPDPESRLEVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIDLLLELQRKENMALILITHDLALVA
                     ESAHRIIVMYAGQVVEEGKAEQIFKAPLHPYTQALLKALPEFAEGKSRLQSLPGVVPG
                     KYDRPQGCLLNPRCPYATEKCRTIEPAMQIINGRQVKCHTPLNAQGEPIRIAV"
     gene            20874..21863
                     /locus_tag="PXA71_001042"
     CDS             20874..21863
                     /locus_tag="PXA71_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5105164.1"
                     /translation="MKENNSLPPFLKAVDLKKYYPVKKGMFAKPKTVKALDGVSFTLE
                     RGKTLAIVGESGCGKSTLGRMLTMIESPTEGELFYNGQNFLVNDKETAQLRRKKIQIV
                     FQNPYSSLNPRKKVGSILEEPLLINTNLSAKERKEKVLEMMAKVGLKPEFYDRYPHMF
                     SGGQRQRIAIARGLMLQPDIVVADEPVSALDVSVRAQVLNLMMDLQEEMGLSYVFISH
                     DLSVVEHIADEVMVMYLGRCVEQGDTKTIFSNPRHPYTQALLSATPRLNPEQRRERIK
                     LTGELPSPLNPPKGCAFNARCRFATDRCYVERPELKTYQDGTRIACFVVEENN"
     gene            complement(22097..22654)
                     /locus_tag="PXA71_001043"
     CDS             complement(22097..22654)
                     /locus_tag="PXA71_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDL5105165.1"
                     /translation="MSLDISSEQLADIRQQMLKFAQLQLQDIALAEDMVQEAFVNAIK
                     NIDNFQRKAALKTWIFAILKNKIIDYLRKKDRIVLESDLADDDEENHFFDNYGHWKEE
                     YYPSSWQEEAVYSKEFWILFEVCLSNLPAKQARVFMMREYLEATSDEICRVVNITSDN
                     LYTLIYRARLQLQQCLSRKLTERNR"
BASE COUNT         6861 a         4834 c         4654 g         6309 t
ORIGIN      
        1 atgcattata cgcaaaacaa aatgccttgc aaggagaatt tggtaatttt ttgcaaaaat
       61 cactaaaata attaccactt gcgtgttttt aaggcaattt gctaaaaatt aaagcagttt
      121 tgatacttgc tattcgttgt ctaaaatttt tttcaggctc tctgctacat aattaatctg
      181 atcatctttt aaattagagt acccaattat aaaagcattt tgctgaattt gagatttatc
      241 ttgataataa gcagacaatg cgacaaattt tataccttgt tcttctgctg cctgcaaaat
      301 ttgcctttct gttaatgttg tgtttagctg tacaatgaaa tgcaagcctg aatgttcttc
      361 ttttattgca atcttttctg ctaaattgcc ttgcttgaaa gcttttagta atttatccct
      421 ctttttttga taatacgctc gcattcgatt gatatgcttt tcaaaatagc cttgttgaat
      481 aaattctgcc aaaatatatt gctcaaaatt ggaaacggta gaagcataaa accctaattc
      541 ctgctgaaaa cgattcagta attctggtgg caaaaccata taggcaattc gtacagttga
      601 agagagcgtt ttagaaaaag tattcatata gataactcgc ccgagcatat caatagattt
      661 caatgcagga attggttgtc ctacaaaacg aaattcgctg tcgtagtcgt cttctacaat
      721 atatctttca gctttttgtg caacccaagc taacaactca taacgtttgg caatcggcat
      781 tacgtgtcct gtcggaaaat ggtgtgatgg cgaggtatgt atcacgtcca cattctttga
      841 atttaactca tcgattgaaa atggcatcga tactgtggct gttgataagc gataactgtg
      901 ataaattctg cgcaatttat cgtaactggg ctcagttagt gcataatgtt tatctaagcc
      961 tagaagctga atgagcaaac cgtaaagata ctccgtaccc gctccaataa taatctgtgt
     1021 tggattaacg atcattcctc taaaggctcg aagatgattg gctatcgcaa attttaatgt
     1081 ccatacgccc ccactctcag cacgctccat tagctcactt tggtgtgttt tcagcacttc
     1141 gcgtactaat tttgtccaaa ccgaaaacgg aaaattttct gctaaagtct gtcgattagt
     1201 taaatctgcc tgccattttt tatttttctc atactgttct gaactgattt tttgtagctg
     1261 aactgatatg gcttcctttt tttctggtaa atttaaagca ttcacaaaaa agcctttttt
     1321 aggctgagta ttcacataac cttctgctac taactgttgg taagctgttt ccactgtcat
     1381 tactgaaatg cctaaatgct ttgcaaaagc ccgtttagac ggcagtttat cccctgctat
     1441 aagtatgttg ctttcaatgt cgttttttag aaaacggtaa agttgctcat agagagcggt
     1501 gccttcttgt gtgttaaaag tgtaggtaag cataatctga catgataaga aaaacataaa
     1561 atggtcattt taaacagttc agattaaatt acaatacatg ctgtttcctc actcaaattg
     1621 gctgagtgta tttaaattgg tagatgaaca ctcgcatcca gcgaatataa aaataaactt
     1681 aatgccgagc taatcgaaac tacgaaaagt tcaattattc aacaattaga aggaaaaagt
     1741 acaatgacta atcgctatga tttaaacaga caacttgctc aaatgttaaa aggcggtgta
     1801 attatggatg taactacccc tgagcaagcc tgcattgcgg aagaagctgg agcttgtgca
     1861 gtaatggcac tagagagaat tcctgcagat attcgtgcag ctggtggcgt ttctcgtatg
     1921 agtgatccca agatgataaa gagtatccaa gcagcggtat ccattcctgt aatggcgaaa
     1981 gtacgtattg gacacgttac agaagcacaa atcctgcaag cgatcgaaat tgactatatt
     2041 gacgaaagtg aggtgctttc tcctgcagat gataccttcc acattaacaa gcgtaaattt
     2101 gaagtgccat ttgtatgtgg agcaaaaaat ttaggcgaag ccctacgtcg tattaatgaa
     2161 ggcgctgcta tgatccgtag taagggcgag ccaggaacag gcaatgtggt gcaagcagta
     2221 catcatcttc gcaaaatgaa acaagaaatt gcccgcttgg tttcacatac cacagatgaa
     2281 ctttatcacg tagctaaaga gctccaagta ccatttgatt tagtacaata tgtacatcag
     2341 taccaaaaat tgcctgttgt cacctttgct gctggaggtg ttgcaacccc tgccgatgct
     2401 gcattgatga tgcagttagg tgcagaagga gtcttcgttg gctcaggtat tttcaagtca
     2461 ggcgatcctg ctaaacgagc gcgggccatt gtacaagctg ttaccaacta caacgatcct
     2521 aaattacttg cggagctttc tgaagattta ggtgaagcaa tggtaggaat taatgagcaa
     2581 gagattgaat tgctaatggc agcaagaggt gtctaatgaa aattgctatt cttgctctgc
     2641 aaggtgcatt tagcgagcat actgataaac tccagcaact aggggttgaa agtatggaaa
     2701 ttcgtcaact tgctgattta aaccaagatt ttgatggtct gattttacct ggtggcgaat
     2761 cgactgttca aggtaaatta ttacgtgaat taggcttgct tgagccgctt cgtcaaaaaa
     2821 ttttaaatgg cttgccaacg cttggaactt gtgcgggttt aattttgctt gcggaaaatt
     2881 tggtaaacga cgataaaaaa catttggcta ctttgcctgt aacagtgaaa cgtaatgctt
     2941 acggaaggca attaggctcg tttttagtag aagaagaagt taaatatctc ggtaaaattc
     3001 ctctcacatt cattcgtgcg ccttatatag aaagcactgg aaaagatgta gaaattttag
     3061 ccaagataag cggtaagatt gttggagtaa aataccaaaa tcagataggt atatccttcc
     3121 atcccgaagt gaataatgat ttaagttttc accgctattt tgtggaaatg tgccgaaaaa
     3181 ataagtaaaa gaaaaggggc tattgcctct tattttttat acttttttag aaaaagtagt
     3241 tttgaataaa aaaatactaa aactctattt cccttatgtt attattatag taacttttac
     3301 tactatttat ttcacaatca aaaaaggaat cagactatga gccaacttga caccttaagc
     3361 aaaatgaccg ttatcgttgc tgacactggt gatattgaag caatcaaact ttataagcca
     3421 aaagatgcaa caacaaaccc gtctttaatt ttaagtgcat cggcattacc gcaatatgct
     3481 ccattaattg aagaagcgat taattacgca aaagcacaaa gtagcgataa agatcaacag
     3541 ttagttgatg ctgaagataa attagcggta aatattggtt tagaaatctt aaaacttgta
     3601 cctggacgta tttctacaga agttgatgct cgtttttctt atgatactga aaaaactatc
     3661 gctaaagcac gtaaattaat tggattatat aacgatgcag gcatcagtaa tgatcgcatt
     3721 ttaattaaaa ttgcctctac ttggcaaggt ataaaggcag cagaacagtt agaaaaagaa
     3781 ggcattaact gtaacttaac gttattattc tctcaagctc aagctcgtgc gtgtgcagaa
     3841 gcaggggttt acttaatctc tccattcgtt ggtcgtattt tagactggta caaagctcac
     3901 gaaggtaaag aatatgctcc agctgaagat ccaggtgtaa tttcagtaac caatatatac
     3961 aattactaca aacaacacgg ttatgacact attgtaatgg gtgcaagttt ccgtaatgta
     4021 ggagagatca ttgagttagc tggttgcgac cgtttaacca tctcaccacc gttattaaaa
     4081 gagctacaag agagcgatga aaaattagtt tgcaagctag attacaaagg tgaaatcaag
     4141 cctcgtccag aaaaaatgac agaagcagaa ttctactggg agcataacca agagccaatg
     4201 gcagtagaaa aattagctga aggcattcgt aaatttgcga ttgaccaaga gaagttagaa
     4261 gcaatgcttg ctgaaaaact tcaatagaca acgcataaaa aaaccggcat taacgataat
     4321 taatgccggt tttaatttct ataaatgatt atttaaactc ataacgtcta atcgttttta
     4381 gatcgctatc ttcattttta atttcatcgg caagatgaac acgagcacca accgctgcat
     4441 gtgcatcata ctcacgagtt agagtcacag tttcaccatt atctcgttga actgtaagtt
     4501 caacaacatc gtttgatact gctttgctag ataaatgttg cattaccttt atcagaataa
     4561 acatctgcag tacaagctgc taacataagt gaagctaata cagctaaaga aagttttttc
     4621 attaataata tatcctctag gaaaaactaa aattaaagca gagaaacatt caggtctgaa
     4681 ttagacccta cgattctcac acgtttgcca ggcacaaaac cgtcttcttt cttttgaacg
     4741 accacgattt ctttaccatc atctttgcga ataaccattt ccaatgaaga aacttgactc
     4801 gctttttgtt ctacttgatt accaattacc gcaccggcaa ctgcccccac tgcggttgca
     4861 atcgcttgcc ctgtaccacc gccaatcgca ttaccggcaa cgccacctaa tacaccaccg
     4921 ccgacagtac cgatcacacc ttcactgcgt gcttgaattt tcacatcacg cactgaaaca
     4981 atagtgccat aagcgataga acgagcttct tttgcctgct caccggaata aacgcttccg
     5041 ctaaacacgt ctgtatttgc acagccaact aaagcaaaac ttgacattaa tgcgacagct
     5101 aaagctaatt ttttcatttt gtttgttctc cgaaacgtta attttctgac ataattacac
     5161 tttttatatc ataagggtgg agctttagac aataaggatt acaaaaagtt acatttctca
     5221 agctgatcgc aatgcttgga tttggcaatc tctccccttc tacctgaggt tggctgattt
     5281 ttaatttaat ctcagaatta tcagcaagtc taaagtgcga caatgccctt gacacccatt
     5341 gttccgaact ttcgttgtct aacatcggaa aaaccagctc aatatgttcc cagccttctt
     5401 ctaaataaac cttatttttc ggaaaaggca actcgacaat ctttacaaat tgtccgcaaa
     5461 attcaaccgc ttgtattaat gcaaacagcc ctatcggtct gccgtttacc tcgctctctt
     5521 taagtaaggt tgccccatca agcaaaagga tcttccactg ttctgcggtt tcggtttggt
     5581 tcattcttac cgcaagatga tcgatttcat acgctgctaa atcaatgccg gcgatttcag
     5641 caatttgtcg gattttctgt tcaaattgcg ataaatcgcc aaaacaagcg gtcattttct
     5701 cgaaaaattt tgcattttct gctataattt tgtccatttt tttgtaaata gaatttaaat
     5761 aggttaaaca gtgaatattc aacaaatttt atcagataaa attaaacagg caatggtagc
     5821 aagcggtgca gacagcaatg tcgagccttt agtccgccaa tcgggcaagc cggaatttgg
     5881 cgattaccaa gccaatggtg cgatgggtgc agcgaaaaaa ttggggatga atccgcgtga
     5941 atttgcccaa aaaatcttag agaatgccga tttgaacggt attgccgata aattagaaat
     6001 tgccggtccg ggctttatca acattttctt aaacccagaa tggctggcgg agaacactaa
     6061 cagttcattg caagcggtca attttggcat aaaaactgca aatccgcaga cgattgtgat
     6121 cgactactcc tcgccaaacg tagcaaaaga aatgcacgtc gggcatttgc gttccaccat
     6181 tattggcgat gcggtagttc gtacccttgc gtttttaggc aataatgtga ttcgtgccaa
     6241 ccacgttggc gactggggta ctcaattcgg tatgctgatc gcttaccttg aaaaaatgga
     6301 aaatgagcac gccagcgaaa tggagctaag cgatttagaa gccttctatc gtgcggcaaa
     6361 agagcattat gattcagacg aagcattcgc cgaaaaagcc cgtaactatg tggtgaaatt
     6421 acaaagcggc gataaatatt gcttaacaat gtggaaaaaa ttggtcgata ttacaatgca
     6481 ccacaatcaa gagaactaca atcgcttaaa tgttacgctc accgaaaaag atgtaatggg
     6541 cgaaagcctc tacaatccaa tgttgcctga aattgtggcg gatttaaaag ccaaaggctt
     6601 agcggtggaa gatgacggtg ctttagtggt tttcctcgat gaatttaaaa ataaagatgg
     6661 cgacccaatg ggcgtaatcg tgcagaaaaa agatggcggt ttcttatata ccactaccga
     6721 tattgcggca gcaaaatatc gctacgagac cttaaaagct gaccgagcct tagtcttttc
     6781 tgacagccgc caagctcaac atatgcaaca ggcatggctc attacccgca aagcgggcta
     6841 tgtgccggac agtttcagcc ttgaacaccc gttcttcgga atgatgctag gcaaagacgg
     6901 caaaccgttc aaaacccgta gcggtggcac agtcaaactc aaagatttat tagatgaagc
     6961 ggtagagcgt gccgataaac tgattgccga acgttcaacc gagctaactg cggaagaaaa
     7021 agccgccgtg gttgaagcgg ttgcgattgg ttcggtgaaa tattctgact tatcgaaaaa
     7081 ccgcaccacc gattatgtgt tcgattggga caatatgctg acctttgaag gcaataccgc
     7141 cccgtatatg cagtatgcct acacccgcat tcgctccatc tttgcccgtg cgaacattga
     7201 cgaaaatgca ttgagcggtt caatccaact caatgagcca aaagagcgtg cattagcagt
     7261 gaaactattg caatttgaag aggcattaaa cggcgtggca aaagaaggta tgccacatat
     7321 tttatgccaa tatttatacg agcttgcagg tagtttctcc agtttctacg aggcttgccc
     7381 gattctcaat gccgaagaaa caaccaaaaa cagccgtttg aaactcgctg ccttaacggc
     7441 gaaaaccttg aaacaagggt tggatttact cggtattaaa actgtagaga agatgtaata
     7501 caaactctct ccccttgtgg gagagagacc gcttatgagc gttcagcgaa ataagcagag
     7561 agaggggaca agcggtaatt tttattaaaa tttttacaca ttttcccctc tccctgattt
     7621 ttcttctgaa cgaagaaaaa tctgtccctc tcccacaagg ggagagggca tataaaagga
     7681 aacaaatatg aaatttattg acgaagccct gattcgtgta gaagcaggcg atggcggtaa
     7741 tggctgtgtg agcttccgcc gtgaaaaatt tatcccgaaa ggcggacctg acggtggtga
     7801 tggtggcgat ggtggtgatg tgtatttaat tgccgatgaa aacctaaaca cccttatcga
     7861 ctaccgcttt gaaaaacgtt atgccgctgg gcgtggcgag aatggtcgca gtgccggctg
     7921 taccggacat cgtgggcaag atattaccct acgagtgccg gttggaaccc gtgcgattga
     7981 taacgacacc caagaaatta ttggcgattt aacccgccac ggaatgaaaa tgctggtggc
     8041 aaaaggtggt tatcacggtt taggtaatac ccgctttaaa tcctcagtaa accgagctcc
     8101 acgccaaaaa accaacggta cgcctggcga aaaacgtgat ttgaaattag agctgttact
     8161 gcttgccgat gtgggaatgc ttggcttacc aaacgccggt aaatccacct ttatccgcag
     8221 tgtctctgct gccaaaccaa aagtggcgga ttacccgttc acgacgctgg tgccaagttt
     8281 aggggtagcc cgtgtggggg ccgaccgcag ttttgtggtt gccgatattc cggggttaat
     8341 tgaaggtgca gcagatggtg cagggctggg gattcgtttc ctaaaacact tggaacgttg
     8401 ccgtattttg attcacttag tcgatattat gccgattgat gaaagcgatc cggctcataa
     8461 tatttcggtg attgaatccg agctttacca atacagcgaa aaactcgccg aaaaaccgat
     8521 ctggttggtg tttaataaaa ttgacaccat cggcgaagaa gaagctgctg agcgagcaaa
     8581 agacattgcc gagcaaatcg gctgggaagg cgattactac ttgatttctg ccgctaccgg
     8641 tcaaaacgtg caagctctca ctcgtgatat tatggacttt attgaagcca acccacgcga
     8701 agtggaggaa gaaaataaag cacctgaaga agtcaaattc aaatgggaag actaccacaa
     8761 cgaagcaatg caaaatgcgg tagaagaaga ttgggacgac gattggagcg aagaagatga
     8821 cgaaggcata gagtttattt acgaacgcca ttagtgcaat aatacaagcg gttgttttta
     8881 aacggagatt tgcaaatttc cggagaaaaa caaccgcttg taggtttaag gagagtttat
     8941 gcttagctca acatcgtgcg atttattcaa tattccgttc ttccaatttg ctcagatgaa
     9001 gaaatattgc cctgaggaga tccctcgaat taaggcggaa tataaaactc aatgggaaat
     9061 ttggaaaaag ctacatcagg aagtttctcg tcagcttggg cagccgtttg ctccaccaca
     9121 tattgagaag tggtgcaacg gttggcaagt tcgagcccat ttttttgcct attacaagta
     9181 tgaatttaat cgaaattctg cggctattct ttccgtgatt ttaaatcgtc gccgtttgca
     9241 agtgagcctt gattggcatt gttatcgagc cgatcgctcg caaattaacg tgcatcaata
     9301 caatcaatgg tgggaaaatt tagatcggga aaagtttgct gattttgaga tttggcacgg
     9361 aagtgagagt gaatatgatg attttagaac cgttagtcag atgtcagagc aagcgttcac
     9421 cctaactaac gaggaagatt tttggtgtat cggcaaaaat gtggaaaagg acgatttgga
     9481 taacattgat gtagtagaat ttatctacca aaccattcgg gcattattgc cactttatga
     9541 gaaatgtcat caataaacac taaaaagaga ggcgaacatc atttgttcgc ccctttcaaa
     9601 atttaagcta tcacttcttt tttattttca atgcgtaaac ggtagcgttt atccaacata
     9661 cagagtaaac caccgagagc cataaacagc ccgccaatcc aaatccagcg aatgaacggt
     9721 ttataataca aacgcactgc ccaagagtta tcttctaatt tttcgccaag tgcagcgtat
     9781 aaatctcggg taaagcccca gtcaatcgcc gcttcggtca ttcccattcg gctcaccgta
     9841 tagaaacgtt tttcagcatt aagtgtggct tcatatttac cgtttcgagt aatttcaagc
     9901 tcggcagtgc cgccttgata gtttgcccca tcggtgattt taataccttt aaattcaaat
     9961 tggtaatcta aaatctcagc tttatcaccc acattcattc tgacatctcg ttcaatgctg
    10021 aaattttggc taaatgcaat gccgaacact gtcatcgcaa cccctaagtg agccagcacc
    10081 attccccaat gtgaacggga cagtttgaaa atgccactta agaacgagtg gcgatgggtt
    10141 gcacgttggt gtagctcata caggctaagt aacacaataa agacagacat catcgtgcct
    10201 aacaccacac tcacggtaat ggtgttacgg aataagtatg gcaatccgaa tccaagcaat
    10261 gccattaaaa tagttgcaat aattaccggt ttacgaatag cagaaacttg gtctctacgc
    10321 catttcacta atggtccaat ccctaataca aatgagaaag gaaccattaa aattaagaac
    10381 atttggtcaa aaaatggtgc cccgattgaa atcgtcccta agccgatttg tttgtgaatt
    10441 aatggcagta aggtccctaa aaacaccacc gataaaaatg ccattaataa aatattatta
    10501 atgagtagca tcgtttctct tgaatagcgt tcatagttat ctaagctttt aatttccgag
    10561 cctttgaatg catacagcag taaagaacca cctactacta acaccaagta agccaagatg
    10621 tataaaccac gagttggatc tgaagcaaag gcgtgaactg acaccaaaat gcctgaacgc
    10681 actaagaaag tccccactaa acagagcgag aaagcaagaa tcgctaataa gaccgtccac
    10741 gctttaaatg tgcctcgttt ttcagtcact gctaatgaat gaatcagtgc tgttcctgcg
    10801 agccacggca ttaatgaggc attctcgaca ggatcccaga accaccagcc accccaacca
    10861 agttcgtagt atgcccacca agaaccaagc acgataccga gcgttaaaaa tacccacgct
    10921 gccattgtcc acggacgaga ccatcttgcc cacgcagtat ctaaacgccc tgtcatcagt
    10981 gaggcaatcg caaaagcaaa ggcaacggag aaacccacat agcccatata aagcaacggt
    11041 gggtggaaga tcaagcccac atcttgcagc attgggttta attctttgcc atcaatcgga
    11101 aaatttggga aagttctatc aaacgggttg gaggtaaaaa tcacaaacat caaaaagccg
    11161 atgccaatga cccccattag tcctaacact cgagcaacgg catcttccgg cattttacgg
    11221 gtaaaggttg ctaccccgac agaccaaagc gacaacaacc aaacccaaag caataatgag
    11281 ccttcgtgag cgccccacac cgcagataaa cgatattgca acggtaaacg gctattggag
    11341 ttgttcacca catattgcac ggtaaaatca ttcaccgcaa acagataaaa cagcgaacca
    11401 aaagagacag tcaatgccaa aaacattgcc caagtcatcg ggcgggcaag agcaattaag
    11461 gtgctatttt gcttttctgc tccccaaagc ggtaaaactg ccaacaagat agaaatcgct
    11521 agggctaatg ccaacgtata attgcctaat tctgcaatca tttgctttcc ccttgcacat
    11581 tgttggcttt ttctgcttcc gcctcggctt tcattttgcg gtcggtttcc gattcacctt
    11641 tcagatcttg ttcagacaca cctgattttt tatgctgttc ttttaattta tcgcctaatt
    11701 ccggtggcat atagttttca tcgtgttttg ccagaacttc cgtagctttt aaacgggttg
    11761 gttcaatcaa cacgccttgt gccacaatgc cttgcccttc acggaataaa tccggcaaaa
    11821 ttccttcgta ttccacggta atcgaaggcc cgatatcatt gagatcaaat actactttta
    11881 aacttttatc atcacgcttt accgtatctt ccactaccat tccgcccaca cggatacgct
    11941 gaccaacttc aggcttttgt ttcggatcat catttttacc gtttacaatt tcagacggcg
    12001 tgtaaaacag atcgatattt tggcttaacg cataaagtgt caagcctgct gcgacagaaa
    12061 gcccaagtaa tatcgaaacc accactttta atcttgattt gcgtcttgga ttcatcgtaa
    12121 tcacccttca aaataaatgc aaaattgcat aaaaactcaa aaataaatta gtgtaagaat
    12181 agcaaaaaac cgcaaaacat tcccgatatt tcaaggaagt tttgcgattt ctcaaatcaa
    12241 atacctataa agaagtatga ggctatcgtt gcaaaaaata aagttatttc gaccgcttgt
    12301 ttattgtgat gtttgcttta atttttcttc acgcacaatc tctttttttg cttgagccaa
    12361 aatcgctttc tgttcacggc gactaagcca aatcagccca atcattgcaa tgaaactgac
    12421 accataagag agccatacat aaaagccgta gccacccatt gcaaaaaaat cgctgattga
    12481 ttcaaattga aatgtcattg ttctctccta ctctaaactg attttgccag ttgttttacc
    12541 caagggcgat tacgttcgtc ctttaataag gcaatgcgat aacgccaaat gctaaaccaa
    12601 gcggtaaaaa ttaagctacc gaaaatcgcc aatagcaacg gaattaacat ttccaccgcc
    12661 atagacggtt tatcgaattt agtgatggtc gccccttgat gcaaggtgtt ccaccattcc
    12721 accgaaaagt gaataatcgg caagttaatc acgccaacaa ctgacagcac agccgccgct
    12781 ttggctccgg tttgtctgtc ttggaatgcg gaataaagag ccatcacgcc gatataaagg
    12841 aaaaataaca ctaaagcgga ggttaaacga gcgtcccaca cccaccaagt cccccacatt
    12901 ggtttgcccc aaattgcacc ggttgcaagt gaaataaaag cgaatactaa gccgataggt
    12961 gccattgaaa tcatcgccaa gttagcttgg cgaatttgcc aaaccaatgc caccaagcct
    13021 gccaccgcca ttgagccata tacgcccatc gaccaaattg ctgccggcac gtgaataaag
    13081 ataatgcgat agctatcgcc ctgttggtaa tctttcgggg caaaagccaa gccccaaaca
    13141 aaagcagccg ctaacataat caaacttagc caacctaaaa acggttggat tttccctagc
    13201 aaatggtact gcgtttccga ttttgcataa gggtgtagcc atttccacat atatttctcc
    13261 aaagtaaata attcccctca cccgtttaca ggagagggac gatttgagct tcgttcagaa
    13321 gcgaaaatca gggagagggg aaaaagttgc aaattttcat aataattcga ccgcttcccc
    13381 tctctctgaa aaacacctct gaacgaggtg tttttcggtc tctctccctc aagagggaga
    13441 gaggaagttt tagttcaaac taattcttaa tgcaccggca atcgcaaacg gcgaaaaagt
    13501 taaagtaacc gctaaaattg ctccgataat cgccagttgt ccgctataac ccatatttaa
    13561 ggtggcggct tctaataccg cagcggcaaa aatcagtacc ggtaagaata acgggaggat
    13621 taataaactc agcaacgtac cgcccttgcg taagcccaca gtgagtgcca cgccaatcgc
    13681 tcctaagcag cttaaaatcg gggtgccgag taataatgtc agcactaacg cccaccaaac
    13741 gtgggtttca agtgaaagca aaatggcagc aatcggtgaa agtaaaatca acggtaagcc
    13801 ggtcagcagc cagtgagcaa tcactttcgc taacgcaacc tgcggcaagg caagcggcag
    13861 taacattaat tgctcgagcg aaccgtctaa ataatcatca cggaataacc gctcaaagga
    13921 aagcaatgca gaaagcaaag cagctaccca cgcaatgccg ccggcaattt tgcctaataa
    13981 ttcggggtta ggtcccatta aaatcgggaa tacggtaatc accattaaaa aaaaccacaa
    14041 cggatttaaa atctccgagg gtttacgaaa ggcaatggtg agttcccgct gaataatagt
    14101 caataaaatc atactttaaa ttgatctaac gaaataatac gcactttgtc gctttcagca
    14161 gcctggtggc tggtaaaaat cactaatctg ccttgctcgc aatgctgttc aatatgagca
    14221 atcagatccg ccacaccctt tttatcaata gcggtaaagg gttcatctaa aatccaaagt
    14281 ttggcgttag tgagccacaa ttttgccaac gccacacggc gttgctgacc ggctgacaaa
    14341 tgcgaacaag gcaaatcttc acgcccgatg agcgacactt tcgtcaatgc gtgccaaagg
    14401 gcatcatcat cttgcggtaa ctgttggatt ttctggtaga aacgcaaatt ttcccacggt
    14461 gttaattccg gttttacccc cgaataatgc cctaaataaa atagttcaga ataatagtga
    14521 tcacgctgtt tttgaattgc aatatcgttc cacagcacct caccttccgc aggtaaaaaa
    14581 agcccggcta aaatacgtaa caggctggtt tttccaatgc cgttatgccc ttcaatctgc
    14641 acccattcac cactttgcac ggtaaaactg cacccttcaa acaaacgggt ttcgccccgt
    14701 tcgcaggcaa tctgattaag tttaagctga tattgggccg tttggttcat tatttttcat
    14761 ctggttgaac attttagccg aagtgtatca taagcctttg atttaacgta gcaaataaat
    14821 tacttcttta gaggtagcaa gcggtcaaat tttcaaaaag ttttgcaaat tttgataaga
    14881 atcaaaccgc ttgttacaga gagaggattt ccttcacaaa aggaatggtt aatttacgct
    14941 gggcttggag agacgcttta tccaacttat ccaatatttt agagagttgc tctaaatccg
    15001 ttcccgcttt ttttaacaga aaatgagcga cctcatcgga caattccacc cctttttggt
    15061 gagcatttaa ctgtaaaatt tggcattttt gttcatcggt taaatcgttt agctggtaca
    15121 cttcgcccca agttaagcgg gaacgtaaat ccggcaattg gatattgagt tggtgtggtg
    15181 ggcaatcggc actgattaac agcaaggttt tttgcccttc gttaaacaag ccttgttgtt
    15241 ctcgaatttg gttaaacagg ttaaaaatag caagttccca ttcagcatct cctgcaatcg
    15301 cttgaatatc atctaggcaa atcacattca gcagttcggc attatctaac accaacggcg
    15361 agaaataatt ggctttagtg agcggaatat aactagaagt ttggttattt aaaagaaagt
    15421 ggttacttac tgctttcaac aaatgacttt taccgcagct cttaccgccc caaatgtaaa
    15481 aaaacggctg ttgaacatcc gtaaaatttc gtttgaggga tccaagcaac acttcgctgt
    15541 tttggctata aaaattgtcg aaagtgtctt catcaatttg atgaatgggt agaggtaact
    15601 gcaaggcttt ccttaaatct ctaagtttga tatttttcta agaatagcgg aaaagcaggg
    15661 gtttgagaag taaaaatagt gagaaaatat ccactcattt ttctaatgaa gagatgacaa
    15721 gcggttgaat ttccacataa ttttgtcaat ctgaccgaaa acccaccgtt ttgtgttaaa
    15781 aaaagattgc agttagctca aaaaattgta tattcaaagc tttctactta aaaagtagag
    15841 taaaacaact attacaaaca caacggagtg aatatgaaaa acatgactaa attatcgcta
    15901 ataacattag cgctagccgc ttcaagtagc gtctttgctg caccgaaaac ctttgtttac
    15961 tgcttagagg cttcgccttc agcattaagc ccagtgctat caacagacgg tgcaagcttt
    16021 gatgtgaacg ccctcccgat ttataacaaa ttaaccgact ttgaagacgg tacaactaat
    16081 gttattccct ctcttgccga aaaatgggac atttcggaag acggcaaaac ttacaccttc
    16141 cacctgcgta aaggcgtaaa attccacgac aataaagaat ttaaaccaag ccgtgagtta
    16201 aatgcagacg atgtagtgtt ctccattaac cgtcagtttg atccaaacca tccattccac
    16261 aaagtttccg gcggtaacta cgaatacttt atcggtatgg atatgcaaaa tattatcgat
    16321 aaagtggaaa aagtggacga tcacaccgtt aaaatcagct taaaagtgcc aaatgcgccg
    16381 ttcttagcta acttagcgat ggatttcaac gccgtttact cagcggaata tgcagagcaa
    16441 tccttaaagg ccggcaagcc tgagcgtatt gataccaacc caatcggcag cggcccgttc
    16501 cagtttgtgg attaccaaaa agatgccacc gttcgttaca aagcctttga aaactactgg
    16561 caaggcacag cgaaaattga ccgcttagtg tttgcaatta ctccggatgc atcggtacgt
    16621 ttagccaagt tacaaaaagg cgagtgccac gcaatgcctt accctaaccc ggctgatatc
    16681 gaagatctga aaaaagatcc aaatattgaa ttaatgagcc aatctggaat gaatatcggc
    16741 tatttggcat taaattcatc gattaaacca ttagataacc aaaaggtacg tcaagcatta
    16801 aatcacgctg taaacaaaca agcgattgta gatgcggtat atcagggagc cggtcaagta
    16861 gcgaaaaacc caattccacc aacaatgtgg agctataatg aagcggttca agactatgac
    16921 tacaaccctg aaaaagccaa agcattgtta aaagaagccg gttttgaaaa tggttttgat
    16981 actgaacttt gggcaatgcc ggtatcacgt ccatataacc cgaatgctcg ccgtatggct
    17041 gaacttatcc aagaagactg gaaaaaagtg ggcgtgaatg cgaaaatcgt cagctatgaa
    17101 tggggcgaat atctcaaacg cttacgccaa ggtgaagcgg caacctcaat gattggctgg
    17161 acaggcgata acggtgaccc agataacttc ctcaacacct tattaagctg ctcagcggtg
    17221 gaagccggtt caaactacgc caaattctgc cacaaaccgt ttgaagaagt cgtgcttggt
    17281 gctgcccaag aaagcgacaa agcaaaacgt accgagcttt ataaacaagc tcaagtgatc
    17341 ttcaaagagc aagctccttg gattacgatt gctcactcca ccgtttactt cccggtgcgt
    17401 aaagaagtaa aaggttatgt gatgagtccg ttcagcttac ataacttcta caaagtagat
    17461 ttagcggata aataatccgc caacaagcgg tagaatttgc agattttttt acaaatttga
    17521 ccgcttgtcc tcccctcttt gaactacgag gggcaggggg gaaatttggc agaagcgatt
    17581 gccgaagtga gaggattgta aaagaggaaa taaattttct gtcttattga ttattttctt
    17641 cgttaattac tactgtcaaa tctcccctac cccctctttg ctaaagaggg gaatcagatc
    17701 gagagatcag acaactttga tgaaaatcca acctaagaga ttttaaatgt tttcatttat
    17761 tttaaaacgt gtgctaatgg tgatccctac ctttatagcg attacgttaa ttacttttgc
    17821 ccttgtgcat tttatccccg gtgatccaat tgagatccga atgggggaac gtggattatc
    17881 gcctgaggtt catcaacaaa tgatggaaca actcgggctg aaccgaccgt tgtttgaaca
    17941 atacatcagc tacatcaaag gtgtattgca cggtgatctt ggtaactcat ttcgtaacaa
    18001 cgaaccggtg ctgaaggaat tttttaccct attcccagcc acggttgagt tggcattttt
    18061 tgccctgctc tggtcgttga ttttcggcat tattctcggt gtgattgctg cggtgaaaaa
    18121 agaaagttgg atttcacaca ctgtaaccac gctttcactg accggctact caatgccaat
    18181 tttctggtgg ggcttgattt taattcttta tttctccacc ccgctcggct taccggcttc
    18241 aggtcgttta ccatctgaat actggattga agccgaaacc ggttttatgc tgattgatac
    18301 ttggaattcg gacgaaccag gggcattttt agcggcaatt aaatctctga ttttgccgtc
    18361 tatcgtactg gggacaatcc ctcttgcagt tgtgacccga atgactcgct cttcaatgtt
    18421 ggaagtgttg ggtgaagact atatccgcac cgccaaagcc aaaggcttaa acactacccg
    18481 aattgtgatt gttcacgcat taagaaatgc cttgattccg gtggtaacgg tcgttggctt
    18541 aattgtcggg caactgcttt caggagccgt tttaacggaa aacatcttct cgtggccggg
    18601 tatcggcaaa tggattattg atgcaatcaa cagccgtgat taccctgtac tacaaggctc
    18661 agtgctgatt attgctacta ttattatttt agtgaacctt acggtagatc tactctatgg
    18721 cattgtcaat ccgaggattc gacatagtta gaaaaattcc ttcgattttt cccctcttta
    18781 gcaacgaggg agttacacaa gcggttcaaa ttccgcaatt ttttacaaga ttatttttag
    18841 ttggagttaa tgatgtcagg aataacggcg gtaaatccac ccgcacccaa aacaccgtta
    18901 caggagtttt ggtactattt ttgtcaaaat cggggggcat taataggact tacctttatt
    18961 gcaatcgtct ttgttgcgtg cgtattcgca ccttgggttg ccccttttga tccaatcgaa
    19021 caaaatcgca gtgcgttatt gctccctcct gcttggcttg aaggggggaa ttccgctcat
    19081 ctgctgggta ctgacgatat tgggcgtgat attctttccc gtattattta tggttcaaga
    19141 ttgtccgtct ttatcggctt agtcattgtg ctactttctt gcgtattcgg cgtgatttta
    19201 ggtctacttg ctggctacta tggtggcaca ctcgacatca tcattatgcg ttttgttgat
    19261 attatgctgg cgattccaag cctgctttta actatcggcg tggtcactat tttaggccct
    19321 tcattgataa atgccgctat tgcgattgcg attgtctcca ttccaagtta tgttcgcttg
    19381 acccgtgctt ctgtattaag cgagaaaaac cgtgattatg ttactgcttc tcgtgttgct
    19441 ggtgcgagcg tgcttcgctt aatgtttgtg gtgattttac ctaactgttt agctccgctt
    19501 atcgttcaga tgacgatggg gatctcaaac gctattttag aacttgccgc cctcggcttc
    19561 ttaggcattg gtgcacagcc gccaacaccg gagcttggca caatgcttgc cgaatctcgt
    19621 ggctttatgc aatcggcaaa ctggctggtg accattccgg gtctagcgat tttatcgtta
    19681 gtattagctt tcaacttaat gggtgacggc ttgcgtgacg ccctcgatcc aaaactgaaa
    19741 caataggaga tctaaaatgg cattattaac ggttgatcaa ctttccgtcc attttggtga
    19801 aactaaaaca ccatttaaag cggtggatcg tatcagttac gaagtcaatg aaggcgaagt
    19861 attaggcatt gtgggcgaat ccggttcagg aaaatcggta agttctctcg ctattatggg
    19921 cttaatcgat ttccccggca gggttatggc tgaaaaattg tattttaacg gcaatgattt
    19981 attggcatta aaaccaaaag aaaaacaaca gattgtaggg gctgatgtct caatgatctt
    20041 ccaagatgca atgaccagct taaatccgag ctatactgtg ggctatcaga ttatggaagc
    20101 cctaaaagtg catcaaggtg gctcaaaagc cagccgtcgt gagcgagcga ttgagttgct
    20161 gacgatggtc ggtattcccg atcctgaatc ccgtttagaa gtttatccgc accagctttc
    20221 gggtggtatg agccagagag tgatgattgc gatggcgatt gcctgtcgcc cgaaattatt
    20281 gattgccgat gagccgacta ctgcgttaga tgtgacgatt caagctcaaa tcattgattt
    20341 attacttgaa ttacaacgca aagaaaatat ggcgttgatt ttaatcacgc acgatttagc
    20401 gttagttgcc gagtctgccc atcgcattat cgtgatgtat gcagggcaag tcgtggaaga
    20461 gggcaaagcc gagcagatat tcaaagcacc actgcaccct tacacccaag cattgctcaa
    20521 agccttaccg gaatttgccg aagggaaatc ccgcctgcaa tcactaccgg gcgtagtgcc
    20581 gggcaaatat gaccgcccac aaggttgctt actcaaccct cgctgcccgt atgcaaccga
    20641 aaaatgccga accattgaac cggcaatgca gataatcaac ggcagacagg tgaaatgcca
    20701 cacgccactg aatgcacagg gtgagccgat aaggatagct gtataacgtc ataaagagta
    20761 gggacgcaat gcttcgcgtc cgttacaagc ggtgattttt aaccgatttt tgcaaaataa
    20821 cgatagtgga cgcaaagcat tgcgtcccta cattttccga gaaggaaaac agaatgaaag
    20881 aaaataattc tctcccacca ttcctcaaag cagtggactt aaaaaaatac tacccagtta
    20941 aaaagggaat gttcgctaaa ccgaaaacgg taaaagcgct ggatggtgtc tcttttaccc
    21001 ttgaacgtgg caaaaccctt gcgattgttg gcgaatccgg ctgtggaaaa tcaactttgg
    21061 ggcgaatgct cactatgatt gaaagcccaa ccgaaggtga actgttctac aacgggcaga
    21121 atttcttagt caatgacaaa gaaacggctc aactacgccg taaaaaaatc caaattgtgt
    21181 ttcagaaccc gtatagctcg ctcaatccac gcaaaaaagt aggtagcatt ttagaagaac
    21241 cattattgat taacaccaac ttatccgcaa aagaacgcaa agaaaaagtg ttggaaatga
    21301 tggcgaaagt cggcttaaaa ccggaatttt acgaccgtta tccgcatatg ttttcgggcg
    21361 gacaacgcca gcgaattgcg attgctcggg gcttaatgtt gcagcctgat attgtggttg
    21421 ccgatgaacc cgtttccgca ttagatgttt cggttcgggc gcaagtgttg aatttgatga
    21481 tggatttgca agaagaaatg ggcttgtctt acgttttcat ctcgcacgat ttatccgtag
    21541 tggaacatat tgccgatgaa gtgatggtga tgtatttagg gcgttgcgta gaacaagggg
    21601 ataccaaaac tatcttcagc aatccacgtc acccttatac acaagcgtta ctctccgcaa
    21661 cccctcgttt gaacccggag caacgccgtg agcggattaa actgactggc gaactaccaa
    21721 gcccgcttaa tccaccaaaa ggctgtgcct ttaacgcccg ttgcagattt gcaaccgatc
    21781 gttgctatgt ggagcgacca gagctgaaaa cctatcaaga cggtactcgc attgcttgtt
    21841 ttgtggtgga ggaaaataat taggcaacgc tcgctattta aaaggttaaa gtttttcaac
    21901 tttaaccttt atttttcata cttaatactc ctcatctttt gtagcaaaat ctttcattaa
    21961 tttgctgata tgctcacaat ggtgtttaaa tgacaatacg ggcaaataat caaatgcgtt
    22021 ttaacgccaa tcttctcttt taaagtgagt tttcgttcct ttgagtcaga aattaacctt
    22081 gttacttgtc ggcaattcat ctatttctct ccgttaattt ccttgaaaga cattgttgta
    22141 actgcagcct tgctcgatag attaatgtat ataaattatc tgatgtaata tttactactc
    22201 gacaaatttc atctgaggtt gcctctaaat attccctcat cataaatacc ctagcttgtt
    22261 ttgcaggtaa attgcttaag caaacttcaa ataatatcca aaattctttg gaataaacag
    22321 cttcttcctg ccagctagaa ggataatatt cttctttcca atgcccataa ttatcaaaaa
    22381 agtgattctc ttcgtcatca tcagctagat cactttctag tactatacga tcttttttac
    22441 gtaaataatc aataatttta ttttttagaa tagcaaatat ccaggttttc aatgctgctt
    22501 tacgctggaa attatcaata ttttttattg cattaacgaa tgcttcttga accatatctt
    22561 cagcaagagc aatatcttgt aattgtaact gagcaaattt caacatttgc tgacgaatat
    22621 cggcaagctg ttccgatgaa atatctaaag aaatcttg
//
LOCUS       DANLRW010000033        22312 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.033, whole genome shotgun sequence.
ACCESSION   DANLRW010000033 DANLRW010000000
VERSION     DANLRW010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 22312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22312
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.033"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            7..1383
                     /locus_tag="PXA71_001044"
     CDS             7..1383
                     /locus_tag="PXA71_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDL5105166.1"
                     /translation="MLSNEVFISIIVLLILSLLRINVVIALIISALTCGLIGNLGVEG
                     AGFTEALEKTIKSFTGGLGGGAETAMNYAVLGAFAVALSKSGVTDLLAYKVIKSFGHS
                     PSGRSVTWFKYIVLFVLVAFAMSSQNLIPIHIAFIPILIPPLLSVMNKLQIDRRAVAC
                     ALTFGLTATYMLIPAGFGQIFIESILVKNINQAGEPFQLVTTTAEMTKAMLIPVSGMI
                     LGLLFAFFVSYRKPRVYIENMPEPTADDIEARVANVKPFHIGISIVAIIATCSVQLAT
                     NSTIIGGLVGLVIFALGGVFRLKESNDVFQAGLRLMAMIGFVMIAASGFAGVVNSTGG
                     VPALVESLRDVISSKEMAALLMLVVGLFITMGIGSSFSTVPIITSIYVPLCISFGFSP
                     LATMAIVGVAAALGDAGSPASDSTLGPTSGLNADGKHDHIWDSVVPTFIHFNIPLLVF
                     GWIAAMTL"
     gene            1481..2284
                     /gene="xthA"
                     /locus_tag="PXA71_001045"
     CDS             1481..2284
                     /gene="xthA"
                     /locus_tag="PXA71_001045"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HDL5105167.1"
                     /translation="MKFISFNINGLRARPHQLEAIIEKHQPDVLGLQEIKVADEDFPY
                     DLVNHLGYHVFHHGQKGHYGVALLTKKEPIAVRKGFPTDVLDAQKRMIMADIETDFGV
                     LTVLNGYFPQGENRSHETKFPAKQKFYADLQNYLESELKPENPIIIMGDMNISPTDLD
                     IGIGEPNRKRWLRDGKCSFLPEEREWLDRLYSYGLVDTFRAGNPDVNDKFSWFDYRSK
                     GFDDNRGLRIDLILASKSLAERCVETGIDLDIRAMEKPSDHSPVWATFK"
     gene            2438..3022
                     /gene="lptC"
                     /locus_tag="PXA71_001046"
     CDS             2438..3022
                     /gene="lptC"
                     /locus_tag="PXA71_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HDL5105168.1"
                     /translation="MNKRLTVILLIIVAVLGGWYYSLQEKENTGLDQLIKKEGQPEYV
                     GNKMSTTVYDLKGNPQYFAQATEIKRYESTERTEFFKPFIELFAKESTQKQWKVSADY
                     AEITKEKMLNLKGNIKLVALDPASRLQQITTDTLTVDLNTQDIFTESTVKSIGSGFTT
                     TGVGLKGNLKQQVATLQKDVKSYIEPTIIQETKE"
     gene            3046..3552
                     /gene="lptA"
                     /locus_tag="PXA71_001047"
     CDS             3046..3552
                     /gene="lptA"
                     /locus_tag="PXA71_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HDL5105169.1"
                     /translation="MKLMFKSILVSVLLGSSFSAYALKGDTDQPINIDSGSQSLDMTN
                     NIVTFSDNVVITQGSIKVTAANVKITRQEGKKETIDATGSPVTFQQTLDNGKPVNGKG
                     NSVHYDLNSEFLTLIGNAELKQQGSFIKANKITYDVKKQQLKATSGGKTRVKTVLIPN
                     ELQDNKKK"
     gene            3564..4289
                     /gene="lptB"
                     /locus_tag="PXA71_001048"
     CDS             3564..4289
                     /gene="lptB"
                     /locus_tag="PXA71_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005727816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HDL5105170.1"
                     /translation="MSVLYAEHLAKSYKQRQVVKDVSLNVKSGEIVGLLGPNGAGKTT
                     TFYMVVGLVRHDHGTIRIDDQDISTLPMHDRAKQGIGYLPQEASIFRRLSVYDNLMSV
                     LQVRKNINDKQRKERAEELITEFHIEHIRNSLGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKKIIVNLKERGLGVLITDHNVRETLDVCERAYIVGSGEMIAS
                     GTPQQVLENPDVKRVYLGDQFKL"
     gene            4331..4843
                     /locus_tag="PXA71_001049"
     CDS             4331..4843
                     /locus_tag="PXA71_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5105171.1"
                     /translation="MTKLTEFLSPENVRQGVLISSKKRALELVGKIVAESINQTEQQS
                     EALCPIECFGNLFKREKLGTTGLNQGIALPHAKLPACGDIELTKPIAVFLQLEEAIDY
                     EAQDNKEVDLIYAMMFPENSCEQYKSCLPAIAQKLTDKSLLKQLRAAESAEDIWQILV
                     YADNHLKDEE"
     gene            4856..5719
                     /gene="rapZ"
                     /locus_tag="PXA71_001050"
     CDS             4856..5719
                     /gene="rapZ"
                     /locus_tag="PXA71_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HDL5105172.1"
                     /translation="MELIIISGRSGSGKSVALRALEDAGYYCVDNIPLPLIPTLTYYL
                     TQENRSAVISLDIRNLPNTPNAIEELLTQLEPLNAKLIFLDCERNTLIRRYSDSRRIH
                     PLSTQDDLSLEGALDLEQKLLEPLVQNANYIIDTSHLSSHELAENLRQILQGSTEKEL
                     KIIFQSFGFKYGLPADSDYVFDVRFLPNPHWNPELRPMTGLEQPVIDFLERQTEVHNF
                     IYQTRNYLEMWLPMLEQNNRSYLTIAIGCTGGKHRSIFIAEQLAKYFQAKGKNVQVRH
                     KSLEKHHKKTS"
     gene            5802..6986
                     /locus_tag="PXA71_001051"
     CDS             5802..6986
                     /locus_tag="PXA71_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDL5105173.1"
                     /translation="MKSADIVIVGGGMVGLALAGLLKDVDCQIKIIEKNTPKFDADTI
                     YHRVSAINASSQKILEQIGAFQHIPAQRLSPYTEMKVWEKDSFANIHFDNNDNEIKQL
                     GLSQLGFILENAVIQHALWQQVSQQANVEYIIAAPQTLGVSENGAFLTLDNGEMLSAK
                     LVVGADGANSWVRNQMKMPLTSKDYQHTALVCNVKTTEKHGKTARQIFAEDSIFAFLP
                     MADEHLCSIVWSLPPNKANELKNASEAEFNKALTIAFDNQLGLCEVQSLREIYPLAAR
                     FCRDFAQPRIALIGDAAHTIHPLAGLGVNLGFADARTLANEIQKQLVNNQDIGEYRHL
                     RQFERERKAQAMKLLATMEGLKQLFDGNHPLKKLFRGIGLSLTNQLPFVKKQLIQQAI
                     YL"
     gene            7118..7702
                     /locus_tag="PXA71_001052"
     CDS             7118..7702
                     /locus_tag="PXA71_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein HlpB"
                     /protein_id="HDL5105174.1"
                     /translation="MNKLTKISATALVALFLAACDKPAEKAPATEPTKTTEAAPTTTA
                     PAAEAAKPAETAVAAPSEAAKADYQKLVDWNTAQESTMATAQAELQKKLATQDPKQIQ
                     EGLSAFNKKVEETVKSLDAIEVSDAQIKTFKEKTKSVLTLSSEVISEQVKTISTPNDQ
                     AALQAVQQKAQSLIEAGNELQKLNVELQQRFSAK"
     gene            7769..8371
                     /locus_tag="PXA71_001053"
     CDS             7769..8371
                     /locus_tag="PXA71_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein Hlp"
                     /protein_id="HDL5105175.1"
                     /translation="MNTLAKISLSVLFTLFLTACEQPNSTKTQSSAESPVQVKEESKE
                     EVKPADTGAQDYKMLREWQDTQEKALNDAIKAATETLTDKQKADSTLMQETVNNALLA
                     QIDHIKISAETLNIQNNEVKALKDKTLEVLTLGAQMIVEGAKMEKNPTPEAHKAFGEL
                     QTKLNQLAEEGQQLENILRAKYDPAPAPAPAPAPAPAPQQ"
     gene            complement(8452..9387)
                     /gene="ftsX"
                     /locus_tag="PXA71_001054"
     CDS             complement(8452..9387)
                     /gene="ftsX"
                     /locus_tag="PXA71_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HDL5105176.1"
                     /translation="MIRSFSKLGAQTNYSLRAVWQDLMQRKLGTFLTVLVIAVSLTIP
                     TVSYLLWKNTHEAATQFYPEPQLTVYLHKNLAEHDVNTVVDRIRAFETDKIESFNYIS
                     RQQSLDEFRSWSGFGEALDILDENPLPAVVTLKPKANFNNADTMVELRNGLQQIKGVQ
                     EVRLDNGWLEKLTALTWLIARIAVVCTLLMLLAVFLVIGNSVRTDVANSKAAIEVQQI
                     LGATDHFIARPFLYTGMIYGLFGSLLAVLFSAVTISYFTGVVKYVTDMFTVQFELNGL
                     DFSEAFFLVVLCVFIGWLSAKIATMRNIFRIGSRG"
     gene            complement(9397..10050)
                     /gene="ftsE"
                     /locus_tag="PXA71_001055"
     CDS             complement(9397..10050)
                     /gene="ftsE"
                     /locus_tag="PXA71_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HDL5105177.1"
                     /translation="MIKFTNVNKVYKGGKPALQGIDFHLPAGGMAYITGHSGAGKSTL
                     LKLIMGIERANGGQILFNGHDITRLAHHELPFLRRQIGMVHQDYRLLTDRTILDNVAL
                     PLIILGMNQAIVEREARIALERVGLADKANYLPLHLSGGEQQRVDIARAIVHRPTLLL
                     ADEPTGNLDEKLSFEIFRLFEEFNQAGTTVLIATHDTNIISKRPKPCLVLEQGHLKF"
     gene            complement(10043..11539)
                     /gene="ftsY"
                     /locus_tag="PXA71_001056"
     CDS             complement(10043..11539)
                     /gene="ftsY"
                     /locus_tag="PXA71_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDL5105178.1"
                     /translation="MSEKKKGFWSWLGFGKKEEAEQKEIQQEQESIQPEQPVIVEPET
                     EKSFSEKLDELEDKIEEKVDQLEDYFEEKEEKIEQFAEQVEDTIEQKVEDFKEFVEEK
                     VEEAKAFFDDVEDKIEQTFEEQKGEQAVENLQNIATEQLDLNEQEQVTYQVEEAVAEE
                     VAETELVNNVQDTVEESTIQDEYQEKPSQGGFFSRLIQGLIKTKQNIGSGFRNFFRGK
                     KIDDELFEELEEQLLVADLGMPTTQKIINNLTQHATKQQLKDADLLYQQLKVELGEVL
                     KPVAQPLVLEAKKPYVILMVGVNGVGKTTTIGKLARKFQQEGKSVMLAAGDTFRAAAV
                     EQLQVWGERNNIPVVAQSTGSDSASVIFDAMQSAAAKGIDVLIADTAGRLQNKNNLMD
                     ELKKIVRVMKKYDETAPHEIMLTLDAGTGQNAISQAKLFNEAVGLTGITLTKLDGTAK
                     GGVIFAIADQFNIPIRFIGVGEKIEDLRPFNAEEFIEALFSHEDEQND"
     gene            11618..12208
                     /gene="rsmD"
                     /locus_tag="PXA71_001057"
     CDS             11618..12208
                     /gene="rsmD"
                     /locus_tag="PXA71_001057"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDL5105179.1"
                     /translation="MKKNRNSPQSVQQMGEVRVIAGLWRGRKLPVLNAEGLRPTTDRV
                     KETLFNWLMHDIAHSRCLDCFAGSGSLGIEALSRQAQAVVFLEKFANAANQLKKNLQA
                     LKSEQGSVIHTDTLAYLAQKNNGEPFNIVFIDPPFHQGFVPQVLNLLAENNWLAPNAI
                     LYVETEKNHPPLELPQGWQILKEKAAGMVVSRLIQL"
     gene            12292..12606
                     /locus_tag="PXA71_001058"
     CDS             12292..12606
                     /locus_tag="PXA71_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HDL5105180.1"
                     /translation="MKKLTPDEAIDIAYDIFLEMAGENLDPADILLFNLQFEERGAVE
                     MVETSEDWDQEIGTLIDPDAFAEVWVGLVNEQDEMDDVFARFLISHDEENREYHVVWK
                     EK"
     gene            12619..13131
                     /gene="hpaC"
                     /locus_tag="PXA71_001059"
     CDS             12619..13131
                     /gene="hpaC"
                     /locus_tag="PXA71_001059"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     reductase component"
                     /protein_id="HDL5105181.1"
                     /translation="MANIDTNQPIEASLKFREAMAHLSSAVSIVTTNGVAGKAGLTVS
                     SVCSVTDSPPTLLFCINKNSHVHDIIQQNGKVCVNVLSHEQEDLAKHFAAILESTMEE
                     RFGWDIWNNGFDDQPVLRSAISALQGNIVDTHAVGTHTIFVVEVSHIDVEPNHSLVYF
                     ARQFRSVNID"
     gene            13249..14121
                     /gene="tehB"
                     /locus_tag="PXA71_001060"
     CDS             13249..14121
                     /gene="tehB"
                     /locus_tag="PXA71_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase TehB"
                     /protein_id="HDL5105182.1"
                     /translation="MENLICYKQMPVWTKATLPQMFQEKHNTKVGTWAKLTILKGSLK
                     YYELTEEGEIIKEDIFDANHQRPMVEPQLWHKVEALSDDLECQLAFYCKPEDYFAKKY
                     NLTATHSEVLNAVNYTKGGKALDLGCGRGRNALYLNLLGFDVTAVDHNQESIDFLNYM
                     IEKEQAQNITTAVYDINEATIGSQNGEYDLIISTVVMMFLNRERIPAIIENMQKNTKV
                     GGYNLIVCAMSTDDYPCPMPFSFTFKEGELADYYQGWELVKYNEDLGHLHKTDENGNR
                     IQLRFATMLAKKIS"
     gene            14259..15296
                     /gene="purM"
                     /locus_tag="PXA71_001061"
     CDS             14259..15296
                     /gene="purM"
                     /locus_tag="PXA71_001061"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011962107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDL5105183.1"
                     /translation="MSNTQLSYKDAGVDIHAGNELVERIKPDVKRTRRPEVMGGLGGF
                     GALCALPTKYKEPILVSGTDGVGTKLRLAIDLNKHDTIGQDLVAMCVNDLVVQGAEPL
                     FFLDYYATGKLEVDVATNVVKGIADGCVISGCALVGGETAEMPGMYHEGDYDLAGFCV
                     GVVEKSKIIDGSTVKTGDALIALASSGPHSNGYSLIRKVLEVSRSNPATDLLEDKPLS
                     EHLLAPTKIYVKSILKLVEEVDVHAIAHLTGGGFWENIPRVLPESAKAVIDESSWQWP
                     AIFSWLQEKGNISRYEMYRTFNCGVGMVIALPERDVEKALTLLKESGENAWLIGKIED
                     LGTGSEQVEIR"
     gene            15374..15652
                     /locus_tag="PXA71_001062"
     CDS             15374..15652
                     /locus_tag="PXA71_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HDL5105184.1"
                     /translation="MQLFWPIYFVLMNLAALYLMYSDKQKAIKKEWRVPEITLLSFCL
                     LGGAIGVYLGMKYFRHKTQHWYFHVAVVLSTFAWLIGLPYFYLALSSY"
     gene            15795..17222
                     /gene="aspA"
                     /locus_tag="PXA71_001063"
     CDS             15795..17222
                     /gene="aspA"
                     /locus_tag="PXA71_001063"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HDL5105185.1"
                     /translation="MSDVRIEHDLLGEREVPNSAYWGIHTLRAIENFNISNVTISDVP
                     EFVRGMVMVKKATALANGELGAIPKKIAKAIVAACDEVLVKGRCLDQFPSDVYQGGAG
                     TSVNMNTNEVIANLALEILGEAKGKYDIVNPMDHVNASQSTNDAYPTGFRIAVYNSIT
                     KLINKITYLQTAFENKATEFSDVLKMGRTQLQDAVPMTLGQEFKAFAVLLDEEVRNLK
                     RTAELLLEVNLGATAIGTGLNTPEGYSTLAVKYLAEVTQLPCSLSENLIEATSDCGAY
                     VMVHGALKRTAVKLSKVCNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPEV
                     VNQVCFKVIGNDTTVTFAAEAGQLQLNVMEPVIGQAMFESIELLSNACINLRDKCIDG
                     ITANRDICQNYVFSSIGIVTYLNPFIGHHNGDIVGKICATTGKSVREVVLERGLLTEE
                     QLDDILSIENLMNPTYKAKRFTEEE"
     gene            complement(17297..19315)
                     /gene="rep"
                     /locus_tag="PXA71_001064"
     CDS             complement(17297..19315)
                     /gene="rep"
                     /locus_tag="PXA71_001064"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HDL5105186.1"
                     /translation="MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCG
                     YSPKQIAAVTFTNKAAREMRERVDHSIGKENSKGLTISTFHTLGFEILKREYKLLGFK
                     SGMTLFDEQDQIALLKHLLPENVTEDKDLLKALIATISNWKNDLLSPERVLTRVRDER
                     ERVFSHFYQLYQNQLKAYNALDFDDLIMLPVLLFRQFPEAKSRWQQKIRYLLVDEYQD
                     TNTSQYELIKLIVGNEPNFTVVGDDDQSIYSWRGAKPENMQRLREDFDLQVIKLEQNY
                     RSSQRILHCANILIDNNDHLFSKRLFSELGQGEKLQVIEAKNEEHEAERIVGELIAHR
                     FSKKTKYKDYAILYRGNHQSRLLEKLLMQNRIPYKISGGTSFFARAEIKDMMAYLRLV
                     VNQDDDAAFLRIVNTPKREIGAATLEKLGILANEKQVSLFEAIFDFELIQRLTPKPYQ
                     ALQDFARWIVEIADQADRSDPIEAVKDLLAKIQYEAYLYEMAANPKVAEMQSRNVQTL
                     FEWVQAMLEGDEIEPPMNLVQVVNRLTLRDMLERGEEDDEADQVQLMTLHASKGLEFP
                     HVFLIGMEEGILPHQTSLDEDNVEEERRLAYVGITRAQQTLTFSLCKERRQYGEIIKP
                     EPSRFLLELPQDDLEWESEKPRMTEQEKEAKSSANIANLMAMLKANKK"
     gene            19563..20678
                     /gene="potA"
                     /locus_tag="PXA71_001065"
     CDS             19563..20678
                     /gene="potA"
                     /locus_tag="PXA71_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HDL5105187.1"
                     /translation="MEKVEQKAIIELKNVTKSYGSKTILKNLNLTINDGEFLTILGPS
                     GCGKTTALRLIAGFEDLTEGSIILDGQDVSNVPAEQRPVNTVFQSYALFPHMTIFENV
                     AFGLRMQKVPNAEIEPRVMEALRMVRLEDRAQQKPAQLSGGQQQRIAIARAVVNKPKV
                     LLLDESLSALDYKLRKEMQNELKALQRQLGITFIFVTHDQEEALTMSDRIIVMNAGKI
                     AQDGTPREIYEEPSNLFVARFIGEINVFDATVIERVDATNVKANVEGRICNIKVEDLE
                     VQPNQKLKVLLRPEDIVIEELDENESSKAIIGHIIDRNYKGMTLESSVRLDHNGINVL
                     VSEFFNEDDPNIDHEVGQKVALTWYEGWEVVLNDEGE"
     gene            20665..21528
                     /gene="potB"
                     /locus_tag="PXA71_001066"
     CDS             20665..21528
                     /gene="potB"
                     /locus_tag="PXA71_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005698572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HDL5105188.1"
                     /translation="MKANNKFQNGAVATIFGWLLLFVLVPNVLVLIISFLTENRQSQY
                     FVDFAFSFDAYKSLFNDTYAAVLWNSLYMAGIATFFCLIIGYPFAFFIAKMPERIRPF
                     LLFLVVLPFWTNSLIRIYGIKIFLGVKGFLNESLMALGIISEPMRLLNSEIAIIIGLV
                     YILLPFMILPLYSSIEKIDNRLLEAAKDLGANAFQRFIKVTIPLTMPGIVAGCLLVLL
                     PAMGMFYVADLLGGGKTPLVGNIIKSLFLNTNQFALGSAVSIALTILMALMLYVYYRA
                     NKLLNKKVELE"
     gene            21528..22295
                     /gene="potC"
                     /locus_tag="PXA71_001067"
     CDS             21528..22295
                     /gene="potC"
                     /locus_tag="PXA71_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HDL5105189.1"
                     /translation="MKKMFRNLFMLVVFAYLYIPIIILVINSFNEDRFGLNWKGFTWN
                     WYERLFSNDTLVQATLNSLTIAFFAATFSTILGALTSIALYRYRFRGKKLVGGMLFVV
                     MMSPDIVMAVSMLVLFMILGIKLGFISLLIAHITFCLPYVVIAISSRLSDFDGKMLEA
                     AKDLGASEVTILRKIILPLALPSIISGWLLSFTISLDDVIVSSFVTSPSYEVLPLKIF
                     SLVKTGVTPEVNALATIMIIFSLTLVVLSQLVVKKKV"
BASE COUNT         6747 a         4623 c         4396 g         6546 t
ORIGIN      
        1 aacacaatgt tatcaaacga agtctttatt tcgattatcg tgctgttaat cctaagcttg
       61 cttagaatta atgtagtaat cgcacttatt atttctgccc ttacttgcgg tctaatcggt
      121 aatcttggtg tagaaggggc tggatttacc gaagcattgg aaaaaacaat aaaaagtttt
      181 actggtggtt taggtggggg tgcggaaact gctatgaact atgccgttct tggtgcgttt
      241 gccgtagctc tatcaaaatc aggcgtgacc gatttattag cctataaagt gatcaaatcc
      301 tttggtcaca gcccgtcagg tcgctccgtt acttggttta aatacattgt attatttgtg
      361 ttagtggcat ttgcaatgtc atctcaaaac ctaattccaa ttcatattgc ctttattccg
      421 attttaattc caccgctatt aagcgtaatg aataaattgc aaattgaccg ccgtgcggta
      481 gcttgtgctt taacctttgg tttaaccgcc acttatatgt taattccggc aggtttcggt
      541 cagatcttta ttgaaagcat cttagttaaa aatatcaacc aagcaggtga accgttccaa
      601 ttagtgacta ccacagcgga aatgaccaaa gcgatgttaa ttcctgtttc cggtatgatt
      661 ttaggcttac tgtttgcatt ctttgtgtca taccgtaaac cgcgtgtgta tattgaaaat
      721 atgcctgaac caaccgcaga tgatattgaa gcccgtgttg caaacgttaa gcccttccat
      781 atcggcatta gtattgtggc gattatcgcg acctgttcgg tgcaattagc aacaaattcg
      841 actattatcg gcggcttagt cggtctggtt attttcgcct taggcggtgt atttagactg
      901 aaagagagta acgatgtctt ccaagctggc ttacgtttaa tggcgatgat tggctttgtg
      961 atgattgccg cctccggttt tgccggcgtg gtcaattcaa caggcggtgt gccggcattg
     1021 gtagaaagcc tgcgtgatgt gatttcatca aaagaaatgg cagcattgct aatgttagtc
     1081 gttggcttat ttattacgat gggtatcggc tcttcattct cgactgtgcc gatcattacc
     1141 tcaatttatg tgccgctttg tatctcattt ggcttctcgc cactggcgac aatggcgatt
     1201 gtcggtgttg ctgctgcact cggtgatgca ggttctccgg catcagattc cacacttggt
     1261 ccaacctccg gcttgaatgc tgacggtaaa cacgaccaca tttgggattc tgttgtacca
     1321 acttttatcc actttaacat tccattatta gtgttcggct ggattgcagc aatgacactt
     1381 taagctataa tatgcaaaat ttttgctaaa aatgaccgct tgtagccatt acaagcggtc
     1441 tattttcttc tttattttgc aaaccacatt aggatcacca atgaaattta tctcttttaa
     1501 tatcaacgga ttacgagcca gaccacatca gctcgaagcg attatcgaaa aacaccagcc
     1561 cgatgtactc ggcttacaag aaatcaaagt tgccgatgaa gattttcctt acgatttagt
     1621 caatcactta ggctaccacg ttttccacca cgggcagaaa ggtcattacg gcgtggcatt
     1681 actgactaaa aaagagccta tagcggtgcg taaaggcttc ccgacagatg tacttgatgc
     1741 tcaaaaacga atgattatgg cggatatcga gaccgatttc ggcgtgctaa ccgtattaaa
     1801 cggctatttc ccacaggggg aaaatcgcag ccacgaaacc aaattcccgg caaaacaaaa
     1861 attctatgct gatttgcaga actacttgga aagcgaatta aagccggaaa atccgattat
     1921 tattatgggc gatatgaaca tcagcccgac tgatttggat atcggcatcg gcgagccaaa
     1981 ccgcaaacgc tggctgcgtg acggtaaatg ttcattctta cccgaagagc gtgaatggct
     2041 agatcgctta tacagctacg gcttggttga tactttccgt gcaggcaacc cagacgtgaa
     2101 cgataagttc tcttggtttg actaccgttc aaaaggtttt gatgataatc gtggcttgcg
     2161 tattgattta attcttgctt caaaatcact tgctgagcgt tgcgtggaaa caggcattga
     2221 tttagacatt cgagcaatgg aaaaaccgtc tgaccactcc cctgtttggg caacctttaa
     2281 ataaagttgc aaaaaaatct gagttttcaa ccgcttgtca gtttttagcc ctacaagcgg
     2341 ttattttttc tcactttttt gcacttttta cgctgtacta tatccctatt caaatctgtg
     2401 ctacaatcaa acactatttt tagattattt ttggattatg aacaaacgtt taaccgttat
     2461 tttactgatt attgttgccg tacttggtgg ctggtattac agcttacaag agaaagagaa
     2521 tacggggctt gatcagctta ttaaaaagga aggacagcct gaatatgtgg ggaataaaat
     2581 gtccaccacg gtctatgatc taaaaggaaa cccacaatat ttcgctcaag ctactgaaat
     2641 taaacgctat gagtctactg agcgtactga gttttttaaa ccttttattg agctttttgc
     2701 caaagagtcg acgcaaaaac agtggaaagt cagtgccgat tatgcagaaa ttaccaaaga
     2761 aaaaatgtta aatttaaaag gtaatatcaa acttgttgca ttagatcctg catcacgttt
     2821 gcaacaaatc actaccgata cgttaactgt tgatttaaat acacaggata tttttaccga
     2881 aagtacggtc aaatcgatag gttccggttt tactacaacg ggggttggat taaaaggtaa
     2941 cttaaaacaa caagttgcga ctttgcaaaa agatgtaaaa tcttacattg aaccgaccat
     3001 tattcaagaa actaaagaat aatttgcttg gaacaaggaa taacaatgaa attaatgttt
     3061 aaatctattt tagtgagcgt gttactgggt agcagctttt ccgcttatgc tctaaaaggc
     3121 gataccgatc agccgattaa tattgattca ggtagccaat cgttagatat gactaacaat
     3181 atcgtgacct ttagcgataa tgtcgttatc actcaagggt cgattaaagt gaccgcagca
     3241 aacgtcaaaa ttacccgtca agaaggtaaa aaagaaacta ttgacgctac aggctcacct
     3301 gtaacattcc aacaaacctt agataacggt aaaccggtaa acggtaaagg caacagcgtt
     3361 cattatgatt taaactctga atttttaacg ctgattggca atgcggaact caaacaacaa
     3421 ggtagcttta ttaaagccaa taaaattacc tatgatgtga aaaaacaaca acttaaagct
     3481 accagtggcg gtaaaacccg agtgaaaacc gtgctaattc caaatgaact tcaagataac
     3541 aagaaaaaat aaggttaaat gatatgtctg tgctttatgc cgaacattta gcaaaaagct
     3601 ataaacaacg ccaagtggta aaagacgtca gcctgaatgt caaatcaggt gaaatcgtgg
     3661 gcttgctcgg tccgaacggc gcaggtaaaa ccaccacttt ctatatggtt gtgggtttgg
     3721 ttcgccacga ccacggcaca attcgtattg acgaccaaga tatcagcaca ctaccaatgc
     3781 acgacagagc aaaacaaggg attggctatc taccgcaaga agcatctatt ttccgccgtt
     3841 taagtgtgta cgataactta atgtcggtat tacaagtgcg taaaaatatc aatgataaac
     3901 agcgtaaaga gcgtgccgaa gagctgatta cagaattcca tattgagcat attcgcaata
     3961 gtttaggtca atcactttca ggtggtgaac gccgccgtgt ggaaattgcc cgagcattag
     4021 cagcgaaccc gaaatttatt ctgttagatg aaccttttgc tggggttgac ccaatctcgg
     4081 taattgatat taaaaaaatt atcgtcaatt taaaagagcg tggtttaggg gtattgatta
     4141 ccgaccataa cgtacgtgaa actctagatg tatgtgaaag agcctacatt gtcggtagcg
     4201 gcgaaatgat tgccagcggc acaccacagc aagtgcttga aaaccctgat gtaaaacgtg
     4261 tttatttagg cgatcaattc aaactctaaa aaatcccctc tttggggatt tcatctttag
     4321 atgaaaaatt atgacaaaac taaccgaatt tctaagccct gaaaatgttc gccaaggtgt
     4381 actgatttca agtaaaaaac gagcgttaga actcgtgggt aaaatcgtgg ctgaatcaat
     4441 caaccaaacc gaacagcaat ctgaagcact ctgccctatt gaatgctttg gcaatttatt
     4501 taaacgtgaa aagttaggca caaccggctt aaatcaaggc attgcacttc ctcatgcaaa
     4561 attgcccgct tgcggtgata ttgagctgac taaaccgatt gcggtctttt tacaactgga
     4621 agaagcgatt gactacgaag cccaagacaa caaagaagtg gatttaattt atgcaatgat
     4681 gtttccggaa aatagctgcg aacagtataa aagttgccta cctgcaattg cacagaaact
     4741 taccgataaa tcgttattaa aacagctccg agcagctgaa tccgcagaag atatttggca
     4801 aattttggtg tatgctgata atcacctaaa agatgaagaa taatactgag gaaatatgga
     4861 attaatcatt ataagcggac gctcaggctc tggtaaatcg gtagcattaa gagcattaga
     4921 agatgcaggt tattactgcg tggataatat ccctttacct ttaattccaa ccttaaccta
     4981 ctaccttact caagaaaatc gttcggcagt catcagctta gatattcgta atttaccgaa
     5041 tacgcctaat gcgattgaag aattgcttac ccagcttgag cctttaaatg ctaagctgat
     5101 ttttttagat tgcgaacgca ataccttaat ccgccgttat agcgattccc gccgaatcca
     5161 cccgctttcc acccaagacg atctctcgtt agaaggtgca ttggatttgg aacaaaaatt
     5221 gcttgagcct ttggtgcaaa atgcaaatta tattattgac accagtcatc tttcttcgca
     5281 cgaattagcg gaaaatcttc gccaaatact gcaaggctca accgaaaaag agcttaaaat
     5341 tattttccaa tcattcggtt ttaaatacgg cttacctgcc gattccgatt acgtttttga
     5401 tgttcgcttt ttaccgaacc cacattggaa tccggagctt cgcccaatga caggcttaga
     5461 gcaaccggtg attgatttct tagaacgcca aaccgaagtg cataatttta tttaccaaac
     5521 ccgcaattat ttagaaatgt ggctgccgat gttggaacaa aataaccgta gctacctaac
     5581 tattgcgatt ggttgcactg gtggaaaaca tcgttccata tttattgccg agcaactggc
     5641 aaaatatttc caagcaaaag gcaaaaatgt gcaagttcgg cataaaagtt tggaaaaaca
     5701 ccataaaaaa acatcttaaa taagtagggg ctggtcctgt gccagccctc atttcaacta
     5761 ttttagggcg ggcacagggc accgccccta catttgattt tatgaaatcc gcagatattg
     5821 ttattgttgg cggcggtatg gttgggctgg ctcttgccgg actgctcaaa gatgtcgatt
     5881 gccaaattaa aattattgag aaaaacacgc ccaaatttga tgccgatacg atttaccacc
     5941 gtgtaagtgc gattaatgct tcaagccaaa aaatactgga acagattggt gcttttcaac
     6001 acattccggc tcaacgcctt tctccttaca ccgaaatgaa agtgtgggaa aaagacagct
     6061 ttgctaatat ccattttgat aataatgata atgaaatcaa gcaattagga ctttcacaac
     6121 ttggctttat tttggaaaat gcggtgattc aacacgcatt gtggcaacag gtttctcaac
     6181 aagctaatgt agaatatatt atcgccgccc cccaaactct gggcgtgagc gaaaacgggg
     6241 catttttaac cttagataac ggcgaaatgc tgtctgctaa attggttgtc ggggcagacg
     6301 gtgcaaattc gtgggtgcgt aaccagatga aaatgccgct taccagtaaa gattatcaac
     6361 ataccgcctt agtctgtaat gtcaaaacaa ccgaaaagca cggcaaaacc gctcgtcaaa
     6421 tctttgctga agatagcatt tttgcttttc tgccaatggc agatgagcat ctctgctcga
     6481 ttgtttggtc gctgccacca aacaaagcca atgaattaaa aaatgcaagc gaagccgaat
     6541 ttaataaagc cttaacgatt gccttcgata atcagcttgg cttatgtgaa gtgcaaagtt
     6601 tgcgtgaaat ttacccgctt gcagcacgct tctgccgtga ctttgcccaa cctcgtattg
     6661 cgttgattgg tgatgccgct cataccattc acccattggc gggacttggt gtcaatttag
     6721 gctttgccga tgccagaacg ctggcaaacg aaatccaaaa acagttggta aacaaccaag
     6781 atattggtga ataccgccat ttacgccaat ttgaacgtga gcgtaaagcc caagcgatga
     6841 aattattagc cacaatggaa ggattaaaac agctatttga cggcaatcac ccgcttaaaa
     6901 aattattcag aggaattggt ttaagcctaa ccaaccagct gccttttgtg aaaaagcagc
     6961 ttattcagca agctatttac ttataaaatg taaatttttt cgaaataacg taaagatgaa
     7021 cgattttatg aactaatacg gagattactt gtctatttat tggtacaata accagccttt
     7081 attggctttt atttttatat tcttgaggaa ttttttaatg aacaaattaa caaaaatcag
     7141 tgcaaccgct ttagtcgcat tattcttagc agcttgtgat aaaccagcag aaaaagcacc
     7201 ggcaacagaa cctacaaaaa caactgaagc tgcaccaact acaacagctc ctgctgcaga
     7261 agcagccaaa cctgctgaaa cagctgtagc cgctccaagc gaagctgcaa aagcagatta
     7321 ccaaaaatta gttgattgga atacggcaca agaaagcaca atggcaacag cacaagcaga
     7381 actacaaaag aaattagcta cacaagatcc taaacaaatt caagaaggat taagtgcatt
     7441 taataaaaaa gtagaagaaa ctgtaaaaag cttagatgcg attgaagtat ctgatgcaca
     7501 aatcaaaaca tttaaagaaa aaacaaaatc agttttaaca ctttcaagtg aagtgatttc
     7561 tgaacaagta aaaacgatct ctacaccaaa tgaccaagca gcattacaag ccgtacaaca
     7621 aaaagctcag tctttaattg aagctggtaa tgagttacaa aaattaaacg tagaattaca
     7681 gcaaagattc tcagctaaat aatttaccat tcaatgaaaa gctagagtat tttgctctag
     7741 cttttttttg caattactaa ggattactat gaacacgctc gctaaaatta gcctatctgt
     7801 attatttacc ctttttttaa ccgcttgcga acaacctaat tctaccaaaa cacagagctc
     7861 agcagaatcg ccagttcaag tgaaagaaga gtcaaaagaa gaagttaaac ctgctgatac
     7921 cggcgctcaa gattataaaa tgttacggga atggcaagac actcaagaaa aagccttaaa
     7981 tgatgcaatt aaagcggcaa cagaaacact tactgacaaa caaaaagccg attctacctt
     8041 aatgcaagag acagttaata acgcattatt agctcaaatt gatcatatta agataagtgc
     8101 tgaaaccctg aatattcaaa ataatgaagt caaagcacta aaagacaaaa ccttagaagt
     8161 cctgacttta ggggctcaga tgatcgtaga aggtgctaaa atggagaaaa atcctacacc
     8221 ggaagcacat aaagcatttg gcgagttaca aacaaaattg aatcaattag ctgaagaagg
     8281 gcaacagtta gaaaatatat taagagctaa atatgatcca gctccagctc cagctccagc
     8341 tccagctcca gctccagctc cacagcaata atatattgct tatagtaaaa aaccaagttc
     8401 ctaggaactg gtttttatct gcaattattt ctctaaaaac aaccgcttgt attagcctct
     8461 actaccaata cggaaaatat ttcgcattgt cgcaattttt gccgacagcc agccaataaa
     8521 cacacaaagc accactaaga agaaggcttc gctgaaatct aatccgttca gttcaaattg
     8581 tacggtaaac atatcagtca catacttcac tacaccggtg aaatagctaa tcgttaccgc
     8641 actaaacagc accgctaaca ggctgccaaa caagccgtaa atcatacctg tgtataaaaa
     8701 cggacgggca ataaagtgat cagttgcccc taaaatttgt tggacttcaa tcgctgcttt
     8761 gctattggca acatcggttc gcacactgtt tccaatcact aaaaaaactg ccaacagcat
     8821 taataaggta cacaccaccg caatacgagc aatcagccaa gttagagcag ttaatttttc
     8881 cagccagccg ttatctaaac gaacctcctg caccccttta atttgttgca aaccgttgcg
     8941 tagctccacc atcgtatcag cattattaaa atttgctttc ggttttaagg taacgaccgc
     9001 aggcaacggg ttttcatcta aaatatctaa cgcttcacca aagcctgacc aagaacgaaa
     9061 ttcgtctaaa ctttgttggc gagaaatata gttaaatgac tcaattttat ccgtctcaaa
     9121 agcacgaatg cgatcaacaa cggtattcac atcgtgttct gccaaatttt tgtgcagata
     9181 aacggttaat tgtggctcag ggtaaaattg tgttgctgcc tcgtgggtat tcttccaaag
     9241 taaataactc acggttggaa tcgtaagtga gaccgcaatc accagcaccg tcagaaaagt
     9301 gccgagcttg cgttgcatta aatcttgcca aaccgctctt aaagagtagt tggtttgagc
     9361 acctaattta ctaaatgaac gaatcataat atttccttaa aatttaagat gcccttgctc
     9421 cagcactaaa cacggctttg gacgctttga aataatattg gtatcgtggg tggcaatcag
     9481 caccgttgtg ccggcttgat taaattcctc aaacaaacgg aaaatttcaa acgagagctt
     9541 ttcatctaag tttccggttg gctcatcggc taataacagc gttgggcgat gaacaatggc
     9601 cctggcaata tcgacacgtt gttgctcacc gccggaaagg tgcaacggca gatagttcgc
     9661 tttatctgcc aagccaacac gctcaagggc aatgcgggct tcacgctcca caatcgcttg
     9721 gttcattccc aaaataatca atggtaatgc gacattatcc aaaatggttc ggtcggttaa
     9781 taagcgataa tcttgatgca ccatcccgat ttggcggcgt aaaaacggca attcatgatg
     9841 agcaagtcgg gtaatatcgt gtccgttaaa caaaatttgc ccgccattgg cacgctcaat
     9901 ccccataatt aattttaata gcgtgctttt ccccgcaccg gaatgcccgg taatatatgc
     9961 cattccaccg gcaggtaggt ggaaatcaat gccctgtaag gctggctttc cgcccttata
    10021 aaccttgttc acattagtga atttaatcat tctgttcgtc ctcgtggcta aataaggctt
    10081 caataaattc ttctgcatta aacgggcgta gatcttcaat tttctcgccc accccaataa
    10141 agcggatcgg aatattgaat tgatcggcaa tcgcaaaaat cacgccacct tttgccgtac
    10201 cgtctaattt agttaaggtg ataccggtta aacccactgc ctcattaaac aatttcgctt
    10261 ggctgatcgc attttgccca gtgccggcat caagcgtaag cataatttcg tgcggtgcgg
    10321 tttcatcata ttttttcatc acccgcacaa ttttcttcaa ctcgtccatc aggttatttt
    10381 tgttttgcaa acgccctgca gtatcagcga ttagcacgtc aatccctttt gccgcagcgg
    10441 attgcatcgc atcaaaaatc accgaggcag aatccgaacc ggtgctttgt gccaccaccg
    10501 gaatgttatt tcgctctccc caaacctgta gctgttcaac tgccgccgct cggaacgtgt
    10561 ctcctgctgc taacattacc gatttgcctt cttgttggaa tttacgggca agtttgccaa
    10621 tggtagtggt tttccccacg ccattcacac caaccattaa aatgacatac ggttttttcg
    10681 cttccaacac taacggttga gccaccggtt ttagcacttc acccagttcc actttcaact
    10741 gttgatacaa caaatctgca tcttttaatt gttgcttggt agcatgttgc gttaaattgt
    10801 tgatgatttt ttgtgtggtc ggcataccta aatccgccac aagcaactgc tcttccagct
    10861 cttcaaataa ctcatcatca attttcttgc cacggaagaa attacggaag cccgaaccaa
    10921 tattctgctt ggttttaatc aagccttgaa ttaaacgact gaagaaaccg ccttgactcg
    10981 gtttttcttg atattcatct tggatagtag attcttcaac tgtgtcttga acattattta
    11041 ctaattcagt ttcagcaact tcttcagcca cagcctcttc gacttgataa gtaacttgct
    11101 cttgttcgtt gagatctaac tgctcagttg caatattttg aagattttcg accgcttgtt
    11161 cgcctttttg ttcttcaaat gtttgttcga ttttatcttc aacatcatca aagaacgctt
    11221 tcgcctcttc aactttttct tcaacaaact ctttgaaatc ttcgactttt tgttcaatgg
    11281 tatcttctac ttgctcagca aattgctcaa ttttttcttc tttttcctca aaatagtctt
    11341 ctaactgatc taccttttct tcaattttat cttccagctc atctaatttt tcagaaaacg
    11401 acttctcagt ttccggttca acaataacag gctgttccgg ttgaatactc tcttgttctt
    11461 gttgaatctc tttctgttca gcttcttctt tcttaccaaa tccaagccaa gaccaaaacc
    11521 cttttttctt ctctgacata tttttctctc atttctcgta aaaatagact aaacttacat
    11581 agtctatcaa aaaatccctt attttccttt agtgagtatg aaaaaaaatc gaaattcccc
    11641 ccaatctgtt cagcaaatgg gcgaagtacg ggttatcgcc ggactgtggc gaggcagaaa
    11701 attacctgta ctaaatgccg aggggcttcg cccgacaacc gatagagtaa aagaaacgct
    11761 gtttaactgg ttaatgcacg acattgctca ctcacgctgt cttgattgct ttgcaggcag
    11821 tggctctctg ggcattgaag ccctttcccg ccaagcacaa gcggtcgttt ttttggaaaa
    11881 atttgcaaat gctgccaacc agttaaagaa aaatctccaa gcattaaaat ccgaacaagg
    11941 tagcgttatt cacactgaca ccctcgccta tttagcacaa aaaaataacg gtgagccatt
    12001 taacatcgta tttatcgatc cgccttttca tcaagggttt gtacctcaag tgctaaactt
    12061 gctggcagaa aataactggc tcgccccgaa tgcgattttg tatgtggaaa ccgagaaaaa
    12121 tcacccgcca ttagagctac cgcaaggctg gcaaatttta aaggaaaaag cagccggaat
    12181 ggtggtaagc cgtctgattc agctataatc tttttgtttt ttataactaa aaaatataaa
    12241 ataaaactta tctatctaac attttattaa cactcaaatt agaataacga aatgaaaaaa
    12301 ttaacccctg atgaagccat tgatattgcc tacgatattt tcttagaaat ggcaggcgaa
    12361 aatttagatc ctgccgatat tttactgttc aacctccaat ttgaagagcg tggtgcagtg
    12421 gaaatggtcg aaacttctga agactgggat caagaaatcg ggactttaat tgaccctgat
    12481 gcctttgccg aagtttgggt tggcttagtc aatgaacaag atgaaatgga cgatgtattc
    12541 gcccgtttct taatttccca cgatgaagaa aaccgtgaat atcacgttgt ttggaaagaa
    12601 aaataaaaag gagaaaaaat ggctaatatc gacactaatc aaccaataga agcctcgctt
    12661 aaatttcgtg aagcaatggc tcacttatct tctgcggtga gcattgtgac aaccaatggc
    12721 gtagccggca aagcagggct gacggtttcg tctgtttgtt ccgttaccga ttccccacca
    12781 acgctcttat tttgcattaa taaaaacagc cacgttcacg atattatcca acaaaacggc
    12841 aaagtatgcg ttaatgtgtt aagccacgaa caagaagact tagcaaaaca ttttgccgcc
    12901 attttagaaa gtacaatgga agaacgcttt ggttgggata tttggaacaa cggctttgac
    12961 gatcagcctg tgttacgcag tgctatttct gctttacaag gcaatattgt tgatacgcac
    13021 gcagtgggta cgcatactat ttttgtggta gaagtgagcc atattgacgt agagccgaac
    13081 cacagtttag tttattttgc ccgccaattt agaagcgtga acattgacta aaatatattt
    13141 aacagaaatt tgatcaaatc cgactttttt agtcggattt tttatttcct gtttttaaaa
    13201 cagtgctaaa attttgccgt ttatgtttga ctgacaaaag gaaacaaaat ggaaaattta
    13261 atttgctaca aacaaatgcc ggtgtggaca aaagcaacct taccacaaat gttccaagaa
    13321 aagcacaaca ccaaagtcgg aacttgggca aaactcacca ttctcaaagg ttctctcaaa
    13381 tattatgaat taaccgaaga gggagaaatt atcaaggaag atatttttga tgcaaaccac
    13441 caacgcccaa tggttgagcc tcaactttgg cataaggttg aagctctttc tgacgattta
    13501 gaatgccagt tggctttcta ttgcaagccg gaagattatt ttgctaaaaa atataatctg
    13561 accgctaccc attcagaagt gctaaatgcc gtcaattata ccaaaggtgg caaagcgtta
    13621 gatttaggtt gcgggcgagg acgcaatgca ctttatctga atttactggg ttttgatgtc
    13681 actgctgttg atcataatca agaaagcatt gattttctca actatatgat cgaaaaagaa
    13741 caagctcaaa acattactac cgctgtttat gatattaacg aggcaactat cggctcgcaa
    13801 aacggtgaat atgacctgat tatttccact gttgtaatga tgttcttaaa ccgtgaacgc
    13861 attcctgcca ttattgagaa tatgcagaaa aacactaaag tcggcggtta taacttaatc
    13921 gtatgtgcaa tgagtaccga tgactaccct tgcccgatgc cgttctcctt taccttcaaa
    13981 gaaggcgagc tcgccgatta ttatcaaggt tgggaattag tcaaatataa cgaagattta
    14041 ggacatttac acaaaactga tgaaaacggc aaccgcattc aactacgttt tgcgacaatg
    14101 ttggcgaaaa aaatcagcta aacttaaccg cttgcagggg gaattagctt ccccctaatt
    14161 catcaaatcc attctattta ttttcacttt ttcattccgc aaacgtttgc ttgtgctata
    14221 atggcttcgt tttttagtca tttactgttg aggttaaagt gagcaacaca caactaagtt
    14281 acaaagatgc cggcgttgat attcacgcag gaaacgagtt agtcgaacga atcaagcctg
    14341 atgttaaacg cacccgtcgc cctgaagtaa tgggcggatt aggtggtttt ggtgctttat
    14401 gtgctttacc gacaaaatat aaagagccga ttttagtttc cggtaccgat ggcgtcggca
    14461 caaaattacg cttagccatt gacttaaaca aacacgatac tatcgggcaa gatttggtag
    14521 cgatgtgtgt gaatgacctt gtcgtgcaag gtgctgaacc gcttttcttc ttagattatt
    14581 acgccaccgg taaattagag gttgatgtag ccaccaatgt cgtcaaaggc attgcagacg
    14641 gttgcgtgat ttcaggttgt gctttagtgg gaggtgaaac ggctgaaatg ccgggaatgt
    14701 accacgaagg cgattacgat ttagccggat tctgtgtcgg tgtggtagaa aaatctaaaa
    14761 tcattgacgg ttcaacggtg aaaaccggtg atgccttaat tgcattagcg tccagtggcc
    14821 cgcattccaa cggctattcg ttaattcgta aagtattgga agtcagccga tccaatcctg
    14881 caaccgattt attggaagac aaacccttaa gcgaacactt attagcccca actaaaattt
    14941 atgtaaaatc aatcctaaaa ttagttgaag aagttgatgt tcacgctatc gctcacttaa
    15001 ccggtggcgg tttctgggaa aatattccac gcgtattgcc ggaatctgcc aaagcggtga
    15061 ttgatgaatc gagctggcaa tggccggcga tatttagctg gttacaggaa aaaggcaata
    15121 tcagccgtta tgaaatgtac cgtactttca actgcggtgt cggaatggtg atagccttac
    15181 ctgagagaga tgtcgaaaaa gcccttactc ttcttaaaga gagtggtgaa aatgcgtggc
    15241 ttatcggtaa aattgaagac ttaggcaccg gtagcgagca agttgaaatc cgctaatttg
    15301 caaaataaat gctaaaattg accgcttgta gtaactgatc tgcaaacggt taaattttta
    15361 ttgaggaatg caaatgcaac tattttggcc tatctacttt gtcttaatga acctagctgc
    15421 cttatattta atgtatagtg acaaacaaaa agcgatcaaa aaagaatggc gagtgccaga
    15481 aattactctc ctctcttttt gcctcttagg tggggctatc ggtgtttacc taggtatgaa
    15541 atactttcgc cataaaaccc aacattggta tttccacgtc gctgttgtgc tttctacttt
    15601 tgcttggctg attggcttgc cttactttta tttagcttta tcatcatatt aatttatcat
    15661 tacttttttt aatccgaaag cccaatttat atcctagtcc gctcacaaaa aatttgattt
    15721 agatcgcatt atttgtctat taaaatcgtt attatctacc aaaatcgatt gtcatttatt
    15781 ttaaggagat gaatatgtca gatgtgcgta ttgaacacga tttacttggt gaaagagaag
    15841 tacctaatag tgcttattgg ggcattcata cattaagagc gattgagaat tttaatatct
    15901 caaatgtcac catttctgat gtacctgaat ttgtgcgtgg catggtaatg gtaaaaaaag
    15961 ctactgcgtt ggcaaatggt gaattgggtg caatcccgaa aaaaattgcc aaagctattg
    16021 tggcagcctg tgatgaagta ttagtgaaag gacgctgtct cgatcaattc ccttcagatg
    16081 tttatcaagg tggagccggc acatcggtga atatgaatac caatgaagtg attgccaacc
    16141 ttgcattaga aattttgggc gaggcaaaag gtaaatatga tattgtcaat ccaatggatc
    16201 acgttaatgc aagccaatcc accaatgatg cctatccaac cggtttccgc atcgcggttt
    16261 ataacagtat cactaaatta atcaataaaa tcacttacct acaaactgca tttgaaaata
    16321 aagccactga gttttccgat gtactaaaaa tgggaagaac gcagttacaa gatgccgtgc
    16381 caatgacgct cggtcaggaa tttaaagctt ttgccgtatt attagatgaa gaggttcgta
    16441 accttaaacg gacggcagaa ttgcttcttg aagtgaattt aggcgcaacc gctatcggta
    16501 ctggtctgaa tacgccagag ggttactcta ctcttgcagt taaatattta gccgaagtca
    16561 cgcaactgcc ttgctcactg tctgaaaatc tcattgaggc aacatctgac tgtggtgctt
    16621 atgtaatggt tcacggtgca ttaaaacgca ccgccgtcaa actttctaaa gtgtgtaatg
    16681 acttacgatt actttcatca ggcccacgtg ccggcttaaa tgaaattaat cttccggaat
    16741 tacaagccgg ctcatctatt atgccggcaa aagtaaaccc tgttgtacct gaagtcgtaa
    16801 accaagtgtg ctttaaagtg attggtaacg acaccaccgt tacttttgca gcagaggccg
    16861 gtcaattaca gcttaacgta atggagccgg ttatcgggca agcaatgttt gaatctatcg
    16921 agctgctttc caatgcatgt attaatctac gtgataaatg tattgacggt attaccgcta
    16981 accgtgacat ctgccaaaac tatgtgttca gctctattgg tattgtgacc tacctcaatc
    17041 catttatcgg ccaccataat ggtgatattg tcggcaaaat ttgtgcaacc accggcaaaa
    17101 gtgtacgaga agttgtgctt gagcgaggct tactcaccga agaacaactc gatgatattc
    17161 tctcgattga gaacttaatg aatccgactt ataaagccaa acgctttacc gaagaggaat
    17221 aatcattgtt tacaagcggt ctgattctgg caaaaaattg caaattttta ccaaaatcag
    17281 accgcttgtt atcccattat ttcttatttg ctttcagcat cgccattaaa tttgcaatat
    17341 ttgcagaaga ttttgcctct ttttcctgtt cggtcattct tggcttttca ctttcccact
    17401 ccaaatcatc ttgtggcaat tccagtaaaa accggctcgg ctcaggtttg atgatttcgc
    17461 catattggcg acgttcttta cacagtgaaa acgtgagcgt ttgttgggct cgggtaatgc
    17521 cgacataagc caaacgccgc tcttcttcta cattgtcctc atcaaggctg gtttggtgtg
    17581 gcagaatccc ctcttccata ccgattaaga aaacgtgcgg aaattccaac cctttcgagg
    17641 cgtgaagagt cattagttga acttgatcgg cttcatcgtc ctcttcgcca cgttcgagca
    17701 tatctcgcaa ggttaaacgg tttaccactt gcaccaaatt catcggaggc tctatttcat
    17761 cgccctctaa catcgcttgc acccattcaa acaaggtctg cacattacgg ctttgcattt
    17821 ccgctacttt tgggttcgcc gccatttcat acaaataggc ttcatactga attttcgcca
    17881 acagatcttt tactgcttca atcggatcgg atctatcggc ttgatcggca atttccacaa
    17941 tccagcgggc aaaatcctgt aaggcttggt aaggctttgg cgtgaggcgt tgtatgagtt
    18001 caaaatcaaa aatcgcctca aacaaactga cctgcttttc attagcaagt atgcctaatt
    18061 tttctagcgt tgccgcccca atttcccgtt tcggcgtatt cacaatacgc aagaaagctg
    18121 catcatcgtc ttgattcact accaaccgca gatacgccat catatctttg atttccgctc
    18181 gagcaaaaaa tgacgtacca cccgaaattt tatacggaat gcggttttgc attagcaatt
    18241 tttccaacaa gcgggattga tggttgcctc gatacaaaat tgcataatct ttgtatttgg
    18301 tctttttcga gaaacgatgg gcaatcagct cgcccacaat gcgttccgct tcgtgttcct
    18361 cattttttgc ctcaatgacc tgtaattttt ccccttgccc cagttctgaa aacagccgct
    18421 tgctaaacaa gtgatcgtta ttatcaatca gaatattggc acaatgcaga atccgctggc
    18481 tggaacggta attttgctca agtttaatca cttgcaaatc aaaatcttcc cgtaaccgtt
    18541 gcatattttc aggcttcgcc ccacgccaag agtaaattga ttggtcatca tcgcccacga
    18601 ccgtaaagtt tggctcgttg ccgacaatca gcttaattaa ctcatattgg ctggtgttgg
    18661 tgtcttgata ttcatcaact aacaaatagc gaattttctg ttgccaacga gattttgctt
    18721 cgggaaattg gcggaacagc aacaccggca acataatcaa atcatcaaaa tccaacgcat
    18781 tataagcctt aagttgattc tggtagagct gataaaaatg tgaaaacact cgctcacgtt
    18841 catcacgcac acgagtaagt accctttcag gcgaaagcaa atcgtttttc cagttagaaa
    18901 tagtggcaat taaggctttc agcagatcct tatcttccgt cacattttca ggcaataaat
    18961 gtttcagcaa agcaatttga tcctgctcat caaacaaggt catacccgat ttaaaaccga
    19021 gcaatttata ttcgcgtttt aaaatttcaa acccaagtgt gtgaaaagtc gaaatggtta
    19081 aacctttgct gttttctttg ccgatagaat gatccacccg ttcacgcatt tcccgagcag
    19141 ctttgttggt aaaggttact gctgcaatct gcttaggcga atagccacaa tgtgcaatta
    19201 aatgtgcgat tttattaata atcacccgag tcttacccga gccggcacca gccagcacaa
    19261 ggcaagcccc tttggtatat tctactgctt gttgttgttg agaattgagt ttcattgaat
    19321 ctattcaaaa gtaattttga caactatttt aacggaaaga aaacaagcgg tcgaattttc
    19381 aggaaaattt gcaaaaaact ttgaaaatcc gaccgcttgt tcatcagaga aaaatcccca
    19441 aaacgcaaat ttttcctttc aatcttgccc ctttagctat atcattataa gttgattttt
    19501 taggggcaaa tgcctgattt tataactcct tttcttttta atttaaggga aaaaaacagt
    19561 agatggaaaa agtagaacag aaagctatca ttgagcttaa aaatgtaaca aaaagctacg
    19621 gtagtaaaac gattcttaaa aatttaaatt taaccattaa cgatggtgaa tttttaacaa
    19681 ttttaggccc ttccggttgt ggtaaaacaa ctgcgttacg tttaattgcc ggttttgaag
    19741 atttaactga aggttcaatt attcttgatg ggcaagatgt ttctaacgtt ccggcggagc
    19801 aacgcccggt aaacaccgta ttccaaagct atgccctttt cccacatatg acgatttttg
    19861 aaaacgtggc tttcgggctg cgtatgcaaa aagtgccaaa tgctgaaatt gagccacgtg
    19921 tgatggaagc attacgaatg gtgcgtttag aagaccgcgc tcaacaaaaa ccggctcagc
    19981 tttccggtgg tcagcaacaa cgtattgcaa ttgcccgtgc ggtggtaaat aaaccgaaag
    20041 tattgttgtt agacgaatcg ctttctgcgt tagattataa attgcgtaaa gagatgcaaa
    20101 atgaattaaa agcattgcaa cgtcaattag gcattacctt tatttttgtg acccacgatc
    20161 aggaagaagc cttaaccatg tctgatcgta ttatcgtaat gaacgctggt aaaatcgctc
    20221 aagacggtac accacgtgag atttacgaag agccaagtaa cttatttgta gctcgtttca
    20281 tcggcgaaat taacgttttt gatgcaactg taattgagcg tgttgatgca actaatgtaa
    20341 aagcaaacgt agaaggtcgc atttgcaata tcaaagtgga agatttagag gttcagccga
    20401 accaaaaatt aaaagtattg ttacgccctg aagatattgt gattgaggag ttagacgaaa
    20461 acgaaagctc gaaagcaatt atcggtcata ttatcgaccg taactacaaa ggtatgacat
    20521 tagagtctag cgtgagatta gatcataacg gtattaatgt attggttagc gagttcttca
    20581 atgaagacga tccgaacatt gaccacgaag tgggacaaaa agttgctctt acttggtatg
    20641 aaggctggga ggttgtgtta aacgatgaag gcgaataaca aattccaaaa tggtgcggtc
    20701 gcaactattt tcggttggtt attacttttc gtattagtgc cgaacgtact cgttttaatc
    20761 atcagcttct taacagaaaa ccgtcaaagt cagtattttg tggactttgc atttagtttt
    20821 gatgcttata aatcactgtt taatgacacc tatgcagcag tattgtggaa ctcgctatat
    20881 atggcgggca ttgccacctt tttctgtttg atcatcggct atccctttgc attttttatt
    20941 gccaaaatgc cggaaagaat tcgtccgttt ttactgtttt tagtagttct accgttttgg
    21001 actaactcac tgattcgtat ttatggcatt aagattttct taggcgtaaa aggcttttta
    21061 aatgaaagct tgatggcttt aggtataatc agcgagccaa tgcgtttatt aaactcagaa
    21121 attgcgatta ttattggttt agtttacatt ctattacctt ttatgattct accgctttat
    21181 tcatcaatcg agaaaattga taaccgctta ctagaagctg caaaagactt aggtgcaaac
    21241 gccttccagc gttttattaa agtgactatt ccattaacaa tgccgggcat tgtcgcaggt
    21301 tgtttattag tattacttcc ggcaatgggt atgttctatg tggcagattt attaggcggc
    21361 ggtaaaacac cgttagtagg taacattatt aagagcttgt tcttaaatac caaccaattt
    21421 gcattaggtt cagcagtaag tattgcatta actatcttaa tggcattaat gctttatgtt
    21481 tactatcgtg caaacaaatt attaaataaa aaggtggagc ttgaataatg aaaaagatgt
    21541 ttagaaacct ttttatgttg gttgtttttg catatctcta tattccaatt atcattttag
    21601 tgatcaactc ctttaatgaa gaccgctttg gattaaattg gaaaggcttt acttggaatt
    21661 ggtatgagcg tttattcagt aatgatacgc ttgtacaagc aacattgaac tcattaacta
    21721 ttgcgttctt tgcggcaaca ttctcaacca ttttaggggc attaacctct attgcgcttt
    21781 accgttaccg tttccgtggt aaaaagctag tgggcggaat gttattcgtg gtaatgatgt
    21841 cgcctgatat cgtaatggcg gtatctatgc tcgtattatt tatgatctta ggtatcaagc
    21901 taggctttat ttcgctatta attgcacaca ttactttctg tttgccttat gtggtaattg
    21961 caatttcctc acgcctcagc gattttgacg gcaaaatgct agaagctgca aaagacctag
    22021 gtgcaagtga agtgactatt ttgcgtaaaa ttattttacc actggcatta ccttcgatta
    22081 tttcaggctg gttgttaagc tttacgattt cgttagatga cgttattgtt tcatctttcg
    22141 tgacaagccc aagctacgaa gttttaccac tgaaaatttt ctcattggtt aaaacaggtg
    22201 taacacctga agtgaatgca ctagcaacta ttatgattat tttctcatta acattagtgg
    22261 tattaagcca gttagtagtg aagaaaaaag tctaaaaatc actaaaaatc gt
//
LOCUS       DANLRW010000034        21596 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.034, whole genome shotgun sequence.
ACCESSION   DANLRW010000034 DANLRW010000000
VERSION     DANLRW010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21596)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21596)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21596
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.034"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            13..219
                     /locus_tag="PXA71_001068"
     CDS             13..219
                     /locus_tag="PXA71_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5105190.1"
                     /translation="MEKSKWGEISRLAKAIDVAIPIVSFWVNGKRQVPAKRCPEIEKF
                     TEGKVTCEELRPDVDWAVLRNSGK"
     gene            268..1029
                     /locus_tag="PXA71_001069"
     CDS             268..1029
                     /locus_tag="PXA71_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HDL5105191.1"
                     /translation="MKSQSLLPITAQNASGAEVKISSIEIAELCEKQHKNVIVDIRKM
                     LAELKLNSADFSAQYQTKDGRMQPCYFLPKRETMILVSGYRIDLRAKIIDRLDELEKQ
                     HQPSIPKNYPEALRMAAELAEQNQVLLLEKQQTTAENHALKSYFEPGLTPAQFVKGLN
                     GVNSNKINDYLRSRGWLYKDKHCWRVFSHVRDKYLTESFKRIEVDPVERIEMATYKPI
                     LLEKGAVKIFEAYLQGKLPMKADWNGKYYHSKVAV"
     gene            1026..1817
                     /locus_tag="PXA71_001070"
     CDS             1026..1817
                     /locus_tag="PXA71_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5105192.1"
                     /translation="MSMLLMVKAMNCTVGNSARKLVLLKLADNANDDGVCFPSYQFIA
                     DKCEMSKRSAISHIDELIKMGYVSKKSRKNKDGSSSNLYQLHLDAPSEKSALGGENFA
                     PGGSENSAPITSHSINQSINHNTSEQNSDGVDKKSKYRFSDNDMAVAKWIFKRVKQLA
                     PQTKESYLPNWANEVRLMVERDKHTHQEICSLFKFATEHHFWGRNILSVVSLRAKWDR
                     LNLERQSSLRPNNIHSATGNGDIQDTTGFSKGLVVDVGGGTKWEF"
     gene            1805..2440
                     /locus_tag="PXA71_001071"
     CDS             1805..2440
                     /locus_tag="PXA71_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL5105193.1"
                     /translation="MGILATTTQNQVLPVEIVEQAEVETTKIFNRLKATHLGWRANIK
                     SQAEYDNARREWVRLLIENRLTPKEVERGLKIADTDKNPYLPSFGQFLEWCKSIDYAE
                     LGLPDMDQFLKRLNHFSAFGFTEIDNFKFRSNAEYWLLTDLYERNRKHSWKDETLRNQ
                     AEKALVEMAKRIMSGEQIPPPKPVIEEKKKVPIDPRIQRILDEKKQAGAMQ"
     gene            2437..3009
                     /locus_tag="PXA71_001072"
     CDS             2437..3009
                     /locus_tag="PXA71_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5105194.1"
                     /translation="MTDFDKDTYQTPNYVRNWLNHRYAWFHIDGCSNGKNALYSHWIG
                     KAAEGLDEDTLSGQIAEDFLAENLLDVILECVADWGELLRIFVNPPYSNPLPFVQRAA
                     ELKKAGHIVVMLLPADKSTRWYQVIQENASEVIDIIGGRINFINPLTDEEVKGNSKGS
                     MVAVFDPFVEGIVTRQMPLDKIKELGGYEK"
     gene            3079..4107
                     /locus_tag="PXA71_001073"
     CDS             3079..4107
                     /locus_tag="PXA71_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL5105195.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSLAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAEFAKSAKVRSTLNQRDKYSNDLPYTRFVKSIQTCQC
                     RDGKYCHHEKVFVENEKGAVQLCWYHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSSAIEFADLVLFASIKGLLDELDSNALQQFLGYPPLNNSGVSKESNIGFDDV
                     PNARANLKKWAETLKLKVEPEPLAAFMAKPKLQRFEWRKWLQFVKAQPCMCCGQQADD
                     PHHIIGYGGAMGSKQHDLFTLPLCRIHHDELHRNVGKFEQDYGSQLELLIKFLDRAIG
                     LGALEIDG"
     gene            4100..4459
                     /locus_tag="PXA71_001074"
     CDS             4100..4459
                     /locus_tag="PXA71_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDL5105196.1"
                     /translation="MVELVLPYPPSVNDYWRWVSKTRRVVCKRGKDYQWATFLAAQNK
                     PKFGGQVEIKCDVYFPDNRDRDLDNLGKCILDSLVYSKVIVDDSRHYVKKLTFEDKGN
                     QKGGAVIVRIKERLDVN"
     gene            4449..4808
                     /locus_tag="PXA71_001075"
     CDS             4449..4808
                     /locus_tag="PXA71_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105197.1"
                     /translation="MLIDIKGILRFWGYSANGRLGTEFPCVAAGMKPAVSASNHRILR
                     LTDESIFEIDRCIKQLKEQEPQQYEVLIGRYAARVSDTQIEKVLGISHSTFKRELAQA
                     EMYVLGVVVGLKLALVV"
     gene            4888..5694
                     /locus_tag="PXA71_001076"
     CDS             4888..5694
                     /locus_tag="PXA71_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5105198.1"
                     /translation="MKKLVLVTALSLVLSACGSGGGGGSSASNPNKEATPQSPSKSET
                     KSDTSSQNQVKGALSKVSADLQEQVKALKQINVDGRIIELAQEPIGFIEKDLDNGKKG
                     KAYNLAYSSIGYVLPKDVKTDEYGRVIDERASANDVGIFGLATKFQDLPKSGTAHYSG
                     VSFGANSEGKLTLTADFGDKKVNGSITERKLLSNNQALSSINLLSAPISQTKFAGEEI
                     HFAGIAQANVEGNIVQAPYGGKFMGPKAEEVVGFVADDHNDPYEVFAGQK"
     gene            5858..6205
                     /locus_tag="PXA71_001077"
     CDS             5858..6205
                     /locus_tag="PXA71_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin, lambda family"
                     /protein_id="HDL5105199.1"
                     /translation="MPEKNPDIYTQAWNYFAMFVSNHSSFICAVIIAFFTSITKSFLY
                     GKTDTPKRVFAEAILCAVIAGSLRPILIYFNADVSLITPIGAGIGLLGTSAIRQMILK
                     FLNKKAGVDDNVN"
     gene            6195..6791
                     /locus_tag="PXA71_001078"
     CDS             6195..6791
                     /locus_tag="PXA71_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 19 protein"
                     /protein_id="HDL5105200.1"
                     /translation="MLISERKFKQVFPSAIDGIYAEIAKHIEKAGCKTKEQQAMFLAQ
                     CGVECAGYKTFEENLNYSATALLATFPKYFTQHNVVLYARDKRAIANRVYANRMGNGN
                     EQSGDGWKYRGRGLIQITGKANYIEFAKWEGLPSLVTSPDQITDNLALTVQVAVWYWQ
                     SRKLASYGSDILKVTKLINGGTHGLSQRTNYYQRLMVA"
     gene            6792..7142
                     /locus_tag="PXA71_001079"
     CDS             6792..7142
                     /locus_tag="PXA71_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL5105201.1"
                     /translation="MSKYIYLVATILILGLCGWIWQQSKQINTLRAENQTQAQTIEQQ
                     QKANQRLADKLEQERQAVEKIRKSANEMRNKVEIVQNEIKSILAQDSCAKADLPNGVA
                     DSIKRLHRQNNHKH"
     gene            7147..7320
                     /locus_tag="PXA71_001080"
     CDS             7147..7320
                     /locus_tag="PXA71_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105202.1"
                     /translation="MYPPAAYLVPCERTEFSGNTYGDTVEYLIKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            7456..7854
                     /locus_tag="PXA71_001081"
     CDS             7456..7854
                     /locus_tag="PXA71_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105203.1"
                     /translation="MIVKLKLGAVVVLSQVKQATIAYAGSEAYQTAIEQAKKGLLDED
                     KGKPFETVLHFPAVYADEDGQEEICPEQIATTVRSDNVSGEPVAVVLIPDDNVVGELQ
                     SIFIYKTDYAEIFTDNGVKLSAVRTSPAPR"
     gene            8002..8478
                     /locus_tag="PXA71_001082"
     CDS             8002..8478
                     /locus_tag="PXA71_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1441 family protein"
                     /protein_id="HDL5105204.1"
                     /translation="MDNLFDLKLNINQIAELTGLHRQTVSQRVAGLNPALGSNSKLKL
                     YALRDLILTGLAEKMSADVDSLSPADRRAWFQSENERLKFEKEIGELIPASEVALEMS
                     ALAKTVVQALETLPDILERDCGLQPKDLIRVQQVTDDVRDQMALHIQEVTTDTENE"
     gene            8478..10589
                     /locus_tag="PXA71_001083"
     CDS             8478..10589
                     /locus_tag="PXA71_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010786315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
                     /protein_id="HDL5105205.1"
                     /translation="MFASAKEIRRDIANAIKAPRRMRVSEAVAEYMRVPLGGGNSVKW
                     DKHTAAYMLEPMDCLNSREYDAVIFVGPARTGKTIGLIDGWITYSIICDPSDFLLVQL
                     TQEKASEHSRKRLDRTFRCSPEIAKRLSPRKNDNNVHDKYFRAGNLLKIGWPSINVLS
                     SSDYKYVALTDYDRWPEDVDGEGDGFSLASKRTTTFMSAGMTLVESSPGKDIVDLKHI
                     PKSTHEAPPTTGILSLYNRGDRRRFYWQCPDCSEYFEPSMANMVGYREDSDFVKASEN
                     ARLQCPHCQTLIAPELKRELNIKGVWLKEGQKIDASGQISGESRKSRIASFWLEGPAA
                     AYQTWAQLTYKLLNAEHEYEMTGSEETLKAVTNTDWGLPYLPRSALEQRRSDELMERR
                     EEVEEKTVPAQCRFIVAAVDVQGGKNRRFVVQMVGYGENGERWLIDRYNISHTLPDSD
                     GVIEKIDPRIPDDWYILISDVLEKRYPLAHNPNHFMPILAMAVDSGGEDGVTDNAYQF
                     WRKCRRDGYAKRVYLVKGDSTKRQKLITKTYPDNTARSDRHSSARGDVPLYLLQTDYL
                     KDRINNALFRDTVGANYIHFPDWLGEWFFNELTYEERGADGKWRKPGKGNNEAFDLFC
                     YAHAIAILRGYERIKWGDENDVPSWAKLPDINPNIIRETPRTAEQAVEIEEKSEKPQP
                     KPTKAKSSWLSGGGRKTGGWL"
     gene            10586..10810
                     /locus_tag="PXA71_001084"
     CDS             10586..10810
                     /locus_tag="PXA71_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105206.1"
                     /translation="MSLYTIDELKQKIRTLDEKIETAQSQVSFNGRSVSYQVAELTKQ
                     RDRYQTMLDEQLAQSGQRTKQHRIKYARFI"
     gene            10810..12309
                     /locus_tag="PXA71_001085"
     CDS             10810..12309
                     /locus_tag="PXA71_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDL5105207.1"
                     /translation="MNFLEKTIATLSPKWAANRSRNRYVLNAYEAAQPSRTHKASRES
                     KGANSTVRQSAVSLREQARALDQNHDIVIGILDKMEERVIGSKGIHIEPQPLTLAGEV
                     HEELAGQIRKLWAEWSVKPDVTGLYTRPLLERMLLRTWLRDGEVFVQLVKGKVAGLEH
                     GSQVAFSLEALEPDFVPMQSDEAKNGLVQGVFLNAWRKPTAYQVYLDNPQESNGMYGK
                     VKTVPADNMLHLAFRKRLHQIRGVSMLHGVIVRLADLKEYEESERVAARIAAAMTMYI
                     KKGDAALYDDDSNSDGERLFDIAPGAVIDDLKPGEDIGLINSNRPNVNLETFRNGQLR
                     ATAAGTRSSYSSIARDYNGTYSAQRQELVESFEGYAVLQDAFVAAISRPIYREWLKMA
                     IASQAIKLPPDIDQNSLFNAVYSGPVMPWIDPIKEANAWKERIKGGLATEGQAIRASG
                     NNPAEVKRQRIVEIKENQAEGLKFDTDLTNYGGQDKSFSNQKDEINEDE"
     gene            12321..14282
                     /locus_tag="PXA71_001086"
     CDS             12321..14282
                     /locus_tag="PXA71_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HDL5105208.1"
                     /translation="MKTWFNIQAKANDTAEISIFDEIGFWGVTAQQFAKDLKALGNNL
                     KQINLHIHSPGGDVFDGIAIYNLLKNHPANKTVYIDGLAASMASVIAMAGDEIIMPEN
                     AMMMIHKPWGIQGGDADDMRKYADLLDKVESTLIMAYVAKTGKYETDLAEMLKEETWL
                     TGKECVEQGFADKLAEPLVAMACIQSKKLEDYTKMPDKIKNMLFAPQGNAGANPKHEQ
                     PQTPPQAGENPQNVAKPDAMVALAQRNATIKATFAAFGTQFDGLLAECLADVSMTAEQ
                     AKDKLLAKLGENTTPSVPQNHIHAGNGNIVGDSVKQSLMARAGQDTDKTNARDNAYNA
                     MTLRELARASLVDRGVGIAGYTPMQMVGLAFTHSSSDFGQILIDVAHKSLLKGWETAT
                     ENYEQFTTRGTLTDFRPAKRVGLGEFGYLPEVGEGEEYTYGTIGDEGASVALATYGQL
                     FSITRQAIINDDMHLLTKIPEKMGAAAKATITKLVFALITGNATAQDGKKLFDATHKN
                     SLTGAALNVENIDKAIQLMNGFVNSRGEPLSIEPEFMLLPTSLHTKAKQILGSSSVEG
                     ADINSGIINPIRDIVSPIKSPRLQIADPKSWYLLNKEAIEVSYLDGVDSPYIEQQHGF
                     TVDGVSTKVRIDAGVNVIDYRGVVKVTNA"
     gene            14356..14679
                     /locus_tag="PXA71_001087"
     CDS             14356..14679
                     /locus_tag="PXA71_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2190 family protein"
                     /protein_id="HDL5105209.1"
                     /translation="MAKNYIQDGNTVRLTATKAITSGDVIVAEDLIAIAVSDAAKNDA
                     VVGLTTGVFSVKAKQADDIKQGAVLYWSETEGATLTAGSNKRLGIAWKDSGTSSNQVD
                     VKINV"
     gene            14672..14974
                     /locus_tag="PXA71_001088"
     CDS             14672..14974
                     /locus_tag="PXA71_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5105210.1"
                     /translation="MSSPFEQAIAAADQTIQQTMMSEWLIGGKPYPATFDEAPAIFNG
                     LHSTDDRAIHGTERTLTLFRASGYKPRLDDRVSGNGKKYLVKSYHFVDQLIVLQLE"
     gene            14978..15502
                     /locus_tag="PXA71_001089"
     CDS             14978..15502
                     /locus_tag="PXA71_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5105211.1"
                     /translation="MGSQVTGLKELQASLKKIARQTVPKAAAQAIRTVGRQAMNKAVK
                     SVAAEIGVNQKTIKGRAKMTAKPTPSRLQATIKVNRSHMPMIRVLERKSNRLSPTKGS
                     IRVGKHTVQRGFRQRLANGRTHIMYRQGRKRYGIDVAKVPLSQPLTQAFDRELKNYPE
                     QVQAELAKQIAGKL"
     gene            15499..15894
                     /locus_tag="PXA71_001090"
     CDS             15499..15894
                     /locus_tag="PXA71_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5105212.1"
                     /translation="MKIHTKIRKEVLELLQTKLPEIDNFYNGLPTFIDIEEEQLAVSV
                     YLDDISLQEITVCNNQWDAKLNITIHLKSTESAEDELDEWAEKIREIIDDYPEFEHLE
                     SVALSQYQYEQDQNQRTWHMATLIFDVEY"
     gene            15922..16563
                     /locus_tag="PXA71_001091"
     CDS             15922..16563
                     /locus_tag="PXA71_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105213.1"
                     /translation="MAKTTKVQGTKFRISVGREAQKAITAINLNTATLTIASSGYKKG
                     DAIELTGCGQLDGIYPVLSVTTDQVKLCEEVNWTGKDLPANYTKAKAALVQYSEQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPTTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            16647..17048
                     /locus_tag="PXA71_001092"
     CDS             16647..17048
                     /locus_tag="PXA71_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105214.1"
                     /translation="MTLREKLLANKPKLQPIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGVLLFNPLDINDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            17093..17323
                     /locus_tag="PXA71_001093"
     CDS             17093..17323
                     /locus_tag="PXA71_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL5105215.1"
                     /translation="MPERHFAEYRLFYQEQPFGLWRDDYRTAQLAHLTAMFNRDPKGK
                     APKLAEFMPFFNRTDEVEEIEDDGVADYLAKR"
     gene            17386..17613
                     /locus_tag="PXA71_001094"
     CDS             17386..17613
                     /locus_tag="PXA71_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105216.1"
                     /translation="MFEALDRFMINTIKIAIIVFLVACIFISMPNWWIASILVLFPTA
                     YLLDKYWWRNTEMYRRKMDKLVEEMKNNRQI"
     gene            17667..21233
                     /locus_tag="PXA71_001095"
     CDS             17667..21233
                     /locus_tag="PXA71_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL5105217.1"
                     /translation="MSSSNRLTITLDVENSKLLAGFAQSDTVANKFARSFIVNMDQAQ
                     QKARQFADRSTKYLKNIEQAANNLNSSVSKERFWQIANRLQFPTSKVISYANSYTELG
                     NKLKLVTESESQHARAMAAVYDISLKTAQSTQATSSVYQTFAQNAKQLGISQNDVAKL
                     TETVAKSVAISGASSATASNALVQFSQSLLMGKLKAQEFNSLMTQTPSVIQAIAKGLG
                     ITTAELKAMVDNGEMSAEKMIEGLKKAESYVNGQYAKTTTTISGAMQNLSTAAEKWVG
                     EMDSTVGVSQKAVAVLNALNANFDTVAKTVLVAGGAFALFKGYMNVRPFIESRAAIYE
                     NQKAIIAENQARQQAMAIRQQELVGLSQQTALKLEQTLQTYNQNKAELEAIAVKQQKI
                     TKEREEIAVAIQAAATRSERLALSAELQALDQKEITLGQQKIAVERQQIAAKQALKVA
                     YAENAVAQSAMSAGMITATTTTRAMNGVLAAARAELNLLKAAALSNPLMTLAMVATTA
                     GTALWGFFESQKAAREEALRYADSLDSVRVNIEKMTKAQTDAEMVKLSRSIKEQETAL
                     ANLKQRQAELTREIEQGATVYEDAFAGTVRVTMSAEELAKKQEELTLVTADAEKAQKT
                     LNSSLEAQEALKAHIPIANLREEFVKLYPHIDESQIKVDGLNIAIGNFTVKSPEMVIA
                     TNNIANALGGVAGEAMRAAILVANLSSMKLDANGAAIIDPKHLEKIEQIERNNAIGSA
                     KGKDKIALQVKDALIKSGMKEGDAGYERLKAAYEQQFTLQNAPKGKGGKTKAEKEAEK
                     AAKKQQSYQNQVAEMTNRLAGLKANASDIAIFGQVSDYQEVRKLTEDIAINAEKYKGY
                     GEQGVARLKELASQLESAQQQVAISQFAYNGGEKLKAMEFELTLLGKTRQEQELMQYN
                     HELDLEAARLKIGMADENIAKLDQEIVKLKERRAEIQAQAEQARGSFKQGMLDGLNNI
                     EADVSNVAANVANITQNTFDGMADSLTNFVMTGKADFRSFANSILSDLSKMIIKMMLF
                     NAIKQGATMLFGYQGPTTTVNGNAVYGLGTWATGGYTGDGGKYTPAGIVHKGEYVITK
                     EATARLGLDYLNYLNYGKRGFSSGGGVAVPRVPSSSYQPKSAQSNISVQVINNGEPVD
                     AKVSQKQQGDQMQITVELMREIARQEANGMIQNNFRAGGVFA"
     gene            21233..21562
                     /locus_tag="PXA71_001096"
     CDS             21233..21562
                     /locus_tag="PXA71_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5105218.1"
                     /translation="METLKWCVRTDLAVENTPEIMEVKFGDGYTQRSPKGLNNLLRAY
                     TGTIKVKKGEHLAVEAFFAKHRGVSPFYFKDPYTQQNKKVVCSSWPAKMVGLNHWEFS
                     VTFKEVP"
BASE COUNT         6802 a         4401 c         5061 g         5332 t
ORIGIN      
        1 ttacaagaat acatagaaaa atctaagtgg ggggaaatct ctcgattagc taaagccatc
       61 gatgtagcaa ttccaatagt ttcattttgg gtaaacggca aacgccaagt accggcaaag
      121 cgttgcccgg aaattgaaaa atttacagaa gggaaagtaa cttgtgaaga gctacgccct
      181 gatgttgatt gggcagtttt acgaaattca ggcaaataaa aaaccaccgc tggaacggtg
      241 gctaattaca acctaaggag gtttattttg aaatcccaat cattattacc gataaccgca
      301 caaaatgcaa gcggtgcgga agtcaaaatc agcagtattg aaattgcaga gttatgcgaa
      361 aaacaacata agaacgttat tgtagatatt cgcaagatgt tagctgagct gaaattgaac
      421 tcggctgatt tttcagccca gtatcaaacc aaagacggca gaatgcaacc ctgctacttt
      481 cttccaaaac gagaaacaat gattttagtt tccggctatc gcattgatct gagagccaaa
      541 atcattgacc gcttagatga gttagaaaag caacatcagc cctctattcc gaaaaattac
      601 cccgaggctc tgcgaatggc agcggagttg gcggaacaaa accaagtttt attgttggaa
      661 aaacagcaga ctaccgcaga aaaccacgcc ttgaaatcct actttgaacc gggtttgacc
      721 cctgctcagt ttgtaaaagg gctgaatggc gtaaatagta acaagataaa tgattattta
      781 cgtagtcgag gctggttata caaagacaag cattgctggc gggtgtttag ccacgttcgg
      841 gataaatatc tgacggagtc atttaagaga attgaagttg atcctgttga acgtattgag
      901 atggccacct acaagccaat tttgcttgag aaaggtgctg ttaagatttt tgaggcttat
      961 ttacaaggta agttaccaat gaaagccgat tggaacggca agtattatca cagtaaggtg
     1021 gcggtatgag tatgttatta atggttaagg cgatgaattg tacggtggga aattctgccc
     1081 gtaaattagt gctgttaaaa ctcgctgata acgcaaatga tgatggtgtt tgctttccta
     1141 gttatcaatt tattgcagat aagtgtgaaa tgtctaaacg cagtgctatt agccatattg
     1201 atgaattaat caaaatggga tatgtgagca aaaaatcacg caaaaacaaa gatgggtcta
     1261 gttcaaattt atatcaatta caccttgatg cccctagtga aaaatctgca ctagggggtg
     1321 aaaattttgc accagggggt agtgaaaatt ctgcacccat aaccagtcac tctattaacc
     1381 agtcaattaa ccataatacg tccgaacaaa attcggacgg ggtggataaa aaatcaaaat
     1441 atcgtttttc tgataacgat atggcagtgg caaagtggat ttttaaacga gtgaaacaac
     1501 tagctcctca gaccaaggag tcttacttgc cgaattgggc caatgaagtc cgcttgatgg
     1561 tagaacgtga taaacatact caccaagaaa tttgctcgtt gtttaaattt gcgaccgaac
     1621 accatttttg gggcaggaat atcctaagtg ttgtatctct tcgagctaag tgggatcggc
     1681 taaatctaga aaggcaatca tcattacgac caaacaatat tcactcagca acaggcaatg
     1741 gtgatattca agacacaacg gggttttcaa aaggtcttgt tgttgatgta ggaggaggga
     1801 caaaatggga attttagcta caacgactca aaatcaagta ttacctgttg agattgtgga
     1861 acaagcagag gtggaaacaa ccaagatttt caaccgcttg aaagcaactc acttaggctg
     1921 gcgagccaat atcaagagtc aagccgaata tgataatgct cgccgtgaat gggttcgttt
     1981 gttgattgaa aatcgcttaa cgccaaaaga agttgaacga ggtttgaaaa ttgcggatac
     2041 cgataaaaat ccctatttac cgagctttgg acaattcctc gaatggtgta aatccattga
     2101 ctacgcagaa ttaggtttgc ctgatatgga tcaattcctc aagcgtttaa atcatttttc
     2161 cgcttttggg tttactgaaa tcgataattt taagtttcgt tcaaacgctg aatattggct
     2221 cttaactgac ctttatgaac gaaatcgaaa acatagttgg aaagatgaaa cattacgtaa
     2281 ccaagctgaa aaagcgttag tagagatggc aaaacggatt atgagcggtg aacaaattcc
     2341 acctcctaag ccagtaatcg aagagaaaaa gaaagtgcca atagatccac gcattcagcg
     2401 aattttggac gagaagaaac aagcaggagc aatgcaatga cagattttga taaagacact
     2461 taccaaacac ctaattatgt gcgtaattgg ctaaatcatc gctatgcgtg gtttcacatt
     2521 gacggttgtt ctaacggcaa aaacgcattg tatagccact ggattggcaa agcggcagag
     2581 ggcttagacg aagacacact aagtggtcag attgccgagg atttcttggc agagaacttg
     2641 ctcgatgtga tcttggaatg tgtggcagat tggggcgaat tactgcgtat tttcgtgaat
     2701 ccgccataca gcaatccact gccgtttgta caacgggcgg cagagctgaa aaaagccggc
     2761 catattgtgg taatgctttt accggcagat aaatctaccc gttggtatca ggttatccaa
     2821 gaaaacgcta gtgaggtgat cgacattatc ggcggacgta ttaatttcat caatccgctc
     2881 acagacgagg aagtaaaagg caacagcaaa ggctcgatgg tggcggtgtt cgatccgttt
     2941 gtggagggaa tagttacccg tcaaatgccg ttggataaga ttaaggagct gggcggctat
     3001 gaaaaataac gaaggctggg acggtttaga taaggcgtat cattgcctta gccgcaacaa
     3061 aaagaaatgg gggcaataat ggcggaaggt ttgctactta ccccttactt tcaaaccgaa
     3121 gtgggtattg tgttttacaa agtgcctaaa gatgtttctc ttgctgcttt cggtgagcgg
     3181 actttgttgc aacctgcacc gaccgattta gcaacggtta aatcaggcaa ggttgcaaat
     3241 ttttcggcaa attcgaccgc ttgtaaagag ttggcagagt ttgctaaatc ggcaaaagtt
     3301 cgctcaacgc taaatcagcg tgacaaatac agtaatgatt tgccttatac ccggtttgta
     3361 aagtcaattc agacgtgcca atgccgagat ggtaaatact gccaccacga aaaagtattc
     3421 gtggagaatg aaaaaggtgc ggtacagctt tgttggtatc acgacaaaat gcgaatggac
     3481 ggtgaaatcc cgaatgaaaa attagaagca ctagcggatg aaaactggga aaaatttatc
     3541 gcccaacaaa tccgcttaac cttacgcaaa acgcaatctt ctgccattga atttgcggac
     3601 ttagtgttgt ttgcgagtat caaaggtttg cttgatgaat tagacagcaa cgcattacag
     3661 cagtttctcg gctatccacc actgaataat agcggtgtga gcaaagaaag taatatcgga
     3721 tttgatgatg tgccgaatgc tcgagccaac ctcaaaaagt gggctgaaac gttaaaactg
     3781 aaagtcgagc cggagccgtt ggcggcattt atggcaaaac cgaaattaca gcggttcgag
     3841 tggcggaagt ggttgcagtt tgtaaaagca cagccttgta tgtgttgcgg acaacaagca
     3901 gacgacccac atcatattat cggctatggc ggagcgatgg ggagcaaaca gcacgattta
     3961 ttcactctgc ccctatgccg tattcatcac gatgaattgc atcgcaatgt gggtaaattt
     4021 gagcaagatt acggctcgca attagagttg ttgattaagt ttttagaccg agcgataggt
     4081 ttgggggcgt tagaaattga tggttgaatt ggtgctgccc tatccgccaa gtgtaaacga
     4141 ctattggcgg tgggtaagca aaacaagacg agtggtgtgt aaacgaggca aagactatca
     4201 atgggcaaca tttctcgcag cacagaataa acctaaattt ggcggacagg ttgaaattaa
     4261 gtgcgatgtt tacttccctg ataaccgaga tcgggatttg gataacttag gcaaatgtat
     4321 tttagattcg ttggtatata gcaaagtgat tgttgatgac tcccggcact atgtcaaaaa
     4381 gctgacattt gaggacaagg gcaatcaaaa aggcggtgcg gtaattgtaa ggattaagga
     4441 gagactagat gttaattgat attaaaggta ttttacggtt ttggggctat tccgccaacg
     4501 gcagacttgg tacggaattt ccctgtgtgg cggcagggat gaaacctgct gtatcggcaa
     4561 gcaaccaccg catattacgt ttaactgacg aatccatttt tgaaattgac cgctgtatca
     4621 agcaacttaa agagcaagag cctcagcaat atgaggtgct gattggtcgg tatgcagcaa
     4681 gggtatctga tacacaaatc gaaaaagtat taggtatcag tcactccacc tttaaacgag
     4741 aattggcaca ggcggaaatg tatgtgctgg gtgtggtagt tgggttaaaa ttggcgttgg
     4801 tggtttaaat aatgtgatct gtatcacaac attaattcaa taaatgagat aaagtataga
     4861 ctctttttac ctatggagat tttaccaatg aaaaagttag ttttagttac agcattaagt
     4921 ttagttttat ctgcttgcgg tagtggtgga ggtggtggct catcagcatc aaatcctaat
     4981 aaggaagcta ctccacagtc cccatctaaa agtgaaacta agtcagatac ttcatctcaa
     5041 aatcaagtaa aaggtgcttt atctaaagtt tcggcagatt tacaagagca agtaaaagca
     5101 cttaagcaaa ttaatgttga tggtagaatc attgagttag cccaagagcc tatcggtttt
     5161 atagaaaaag atttagataa tggcaaaaaa ggaaaagcct ataacttagc ttattctagt
     5221 attggttatg tgttacctaa agatgtaaaa acggatgaat atggacgagt aattgatgag
     5281 cgagcttctg ctaatgatgt cggtatattt ggactagcaa ccaaattcca agatttacca
     5341 aaatccggaa ctgcacacta ctctggcgta tcatttggtg caaacagtga aggtaaatta
     5401 acacttactg ctgattttgg tgacaagaaa gtaaatggct caattactga aagaaagcta
     5461 ttatctaata accaagcatt atcttctatt aacttattat ctgcccctat cagtcaaacc
     5521 aagtttgctg gtgaagaaat acattttgcc ggcattgctc aagccaacgt agaaggtaac
     5581 attgttcaag ctccttatgg cggtaaattt atggggccaa aagcggaaga agttgttggt
     5641 ttcgttgccg atgatcataa tgacccatat gaagtatttg ctggtcaaaa ataattttta
     5701 atgtatgatt gacaaggtcg ccctaaaagt ataggattta tgcaatcctt gcgattagtg
     5761 caagtgcatt acgcaatact atttttatag ccctgattgg ttcagccagt cggggctttt
     5821 ttgttgcccc gaaaaagtgg ggtggagtat gaatacaatg cctgaaaaga accctgatat
     5881 atatacgcag gcttggaatt attttgcaat gtttgtcagc aatcatagca gttttatttg
     5941 tgctgttatc attgcttttt ttacgtctat taccaagtca tttttatacg gcaaaaccga
     6001 cacaccaaag cgggtctttg cagaagcgat tctgtgtgcg gtgattgccg gttcgttgcg
     6061 tccgatttta atctatttta atgctgatgt ttccttaatt accccgattg gtgccggtat
     6121 cggactacta gggacaagtg ctattcgtca aatgattttg aaattcctca ataagaaagc
     6181 aggagttgat gataatgtta attagcgaaa gaaaatttaa acaagtattc cccagtgcga
     6241 ttgacggaat ttatgccgaa attgccaaac acattgaaaa agccggttgc aagacgaaag
     6301 agcagcaagc aatgtttttg gctcaatgtg gcgtagagtg tgctggttat aaaacctttg
     6361 aagagaattt gaattattcc gctacggcat tattagccac atttccgaaa tattttaccc
     6421 aacacaatgt tgtgctttat gcccgagata agcgtgcgat tgctaatcgg gtgtatgcaa
     6481 atcgaatggg taacggcaat gaacaaagtg gcgatggttg gaaatatcgt gggcgtgggc
     6541 tgatccagat tactggtaaa gcgaattata ttgagtttgc gaagtgggag gggttgccaa
     6601 gcttggtgac cagtcctgac caaatcacag ataaccttgc tcttacggtg caggtggcgg
     6661 tatggtattg gcaaagtcgc aaattagcaa gttacggtag tgacattcta aaagtaacca
     6721 agctgattaa cggcggcact cacgggctat cacaacgcac gaactattat caacgattaa
     6781 tggtggcata aatgagtaaa tatatttatc tcgtagccac cattttgatt ttgggcttgt
     6841 gtggttggat ttggcagcag tccaagcaga ttaatacctt aagagccgaa aaccaaacgc
     6901 aagcccaaac cattgagcag cagcaaaaag ccaatcaacg gcttgctgat aagctcgaac
     6961 aagagcgaca agcggtcgaa aaaatccgaa aaagtgcaaa tgaaatgcga aacaaagtgg
     7021 agattgttca aaatgagatt aagtcaatcc ttgcccaaga cagttgtgct aaagctgatt
     7081 tgcctaatgg cgttgctgat agcattaagc ggttgcacag gcagaacaat cacaagcact
     7141 gaatatttgt atccgccggc ggcttacctt gtgccgtgcg agcggactga atttagcggc
     7201 aatacatacg gcgatacggt tgagtatctg ataaaagtga tgggagagcg tgatttgtgt
     7261 gctaaccaaa tcgaccgtat cagagaatgg caagcacaaa ccaaacaagg ttttaaatag
     7321 cttggcggat taagccgcta tgacatatgg gagcgtaaca gctccctttt ttattgtacc
     7381 gcattactta gttatgcttt tggttatatc aagaccataa ctaagcaatg tgttctatta
     7441 acataaggat tatttatgat tgtgaaattg aaattaggtg cggtagttgt gctatcacaa
     7501 gttaaacaag ccaccatcgc atacgctgga tcagaggcat accaaacagc tattgagcaa
     7561 gccaagaaag gtttacttga tgaagacaaa ggtaaaccat ttgaaactgt tcttcacttc
     7621 cctgctgtgt atgccgatga agatggacaa gaagaaattt gccctgaaca gattgcaact
     7681 acagtacgtt cagataatgt aagtggtgag cctgttgcag tggtattaat cccagatgat
     7741 aacgtagttg gcgagttaca gtctattttc atttataaga cagattatgc agaaattttt
     7801 actgacaatg gtgtgaaatt aagtgcagta agaacaagtc cagctcctcg ttaattttgt
     7861 aaaaggtact cccgagggga tacccctttc cacggggttg cggcagcgtg gttttcggca
     7921 attttttgag tttctaggca tcatcatctt cctatgatgt tgctgttttt taggcggttt
     7981 tgatttttag gatttgagca aatggacaac ttatttgatc taaaacttaa catcaatcag
     8041 atcgccgaac tcacaggatt gcaccgccag acggtatctc agcgagtcgc tgggttaaat
     8101 ccagcactcg gtagtaatag caaattaaaa ctctatgctc tgcgtgattt aatcctcacc
     8161 gggttggcgg aaaagatgtc ggcagatgtc gatagcctat cacctgctga tcgtcgtgcg
     8221 tggttccagt cggaaaacga aagactaaaa tttgaaaaag aaattggcga gcttatccca
     8281 gcaagcgaag tggctcttga aatgtcagct ttagcaaaaa cggtagtaca agccttagaa
     8341 accttgcctg atattttaga gcgagactgc ggattgcagc ctaaagattt gatacgagtg
     8401 cagcaagtaa ctgacgatgt acgagaccaa atggcattac atatccaaga agttaccact
     8461 gacacggaga atgaataatg tttgctagtg ctaaagaaat tcgacgtgat atagcaaatg
     8521 ccataaaagc acctcggcga atgagagtgt cagaagcagt agcggaatat atgcgtgtac
     8581 cacttggcgg aggcaactcg gtcaaatggg ataagcacac cgccgcctat atgttagaac
     8641 cgatggactg cctcaatagc cgagaatacg atgcggtgat ttttgtcggc ccggcacgaa
     8701 cgggtaaaac catcggcttg attgacggct ggataaccta ctcaattatc tgcgatccgt
     8761 ctgatttcct gttggtgcaa cttacccaag agaaagctag cgaacatagc cgaaaacggc
     8821 ttgaccgcac attccgctgt tcgcccgaaa ttgccaagcg gctaagccca cgcaaaaacg
     8881 ataacaatgt ccacgacaag tatttcagag cgggcaactt gctcaaaatc ggctggccgt
     8941 ctatcaatgt gctttcttca tcggactaca aatatgttgc tctgactgac tacgaccgct
     9001 ggccggaaga tgtggacgga gagggcgacg gtttctcgct tgcctcaaag cggacgacca
     9061 cctttatgtc agcaggaatg actttggtgg agagttcgcc cggtaaagat attgttgatc
     9121 tcaaacatat cccgaaaagc acccacgagg ctccaccgac taccggtatt ttaagcctct
     9181 ataatcgagg tgatcgccgt cggttttact ggcaatgccc cgactgctcc gaatacttcg
     9241 agccgtcaat ggcaaatatg gtcggctacc gtgaagacag tgattttgtc aaagccagcg
     9301 aaaacgcacg gttacaatgc cctcactgcc aaaccctgat tgcccccgaa ctcaaacgag
     9361 agctaaatat caagggcgta tggctcaaag aggggcaaaa aattgatgca agcggtcaaa
     9421 ttagtggcga aagtcgcaaa tcccgtattg cctccttttg gcttgaaggg ccagcggcag
     9481 cctaccaaac gtgggcgcag ctcacctaca aactgctcaa tgccgaacac gaatatgaaa
     9541 tgactggcag tgaggaaacc ctcaaagcgg taacaaatac cgactggggg ttaccttact
     9601 taccacgatc tgcattagaa caacgccgtt ctgatgagtt gatggaacgc cgagaagaag
     9661 tagaagagaa aactgtacca gctcaatgtc gctttattgt ggcggcggtg gacgtacagg
     9721 gcggtaaaaa ccgccgattt gtggtgcaaa tggtcggtta cggtgaaaat ggcgaacgct
     9781 ggttgattga ccgctataac atctcacata ctttgcccga cagtgatggc gtgattgaaa
     9841 aaattgaccc tcgtattccc gatgattggt acatactgat ttcggacgta ctagaaaaac
     9901 gctacccact tgcccacaat ccaaaccact ttatgccgat tttggcgatg gcggtggaca
     9961 gtggcggtga agatggggta accgataacg cctaccaatt ttggcgcaaa tgccgccgag
    10021 atggctatgc gaaacgagtc tatttagtca aaggcgacag caccaaacgg caaaagctga
    10081 ttaccaaaac ttaccccgac aataccgcac gaagtgaccg ccactcctcc gcacggggcg
    10141 atgtgccgtt gtacttgctc caaaccgact acctcaaaga tcggattaac aacgccctgt
    10201 tccgtgatac ggtgggggcg aactacatcc acttccccga ctggctaggt gaatggtttt
    10261 ttaacgaatt gacctacgaa gaacgaggag cggacggcaa atggcggaaa ccgggcaaag
    10321 gcaataacga agccttcgac ctgttctgct atgcccacgc cattgcaatt ttacgaggct
    10381 acgaacgaat caaatggggc gatgaaaacg atgtgccaag ctgggcaaaa ctgcccgaca
    10441 tcaaccctaa tatcattcgg gaaacgccaa gaacggctga acaagcggtc gaaattgaag
    10501 aaaaatccga aaaaccacaa cctaaaccca ccaaagcaaa aagcagttgg ttaagtggtg
    10561 gcggtagaaa aacaggaggc tggctatgag cctttacacc atagacgagc ttaaacaaaa
    10621 aatccgcacg cttgatgaaa aaatcgaaac cgcccaaagc caagtgagct ttaatggtcg
    10681 gtcggtttca tatcaagtgg cggaactaac caaacagcgt gatcgctatc aaacaatgct
    10741 ggatgaacaa cttgcccaaa gcgggcaacg caccaaacag catcgaatta aatatgcgag
    10801 gtttatttga tgaacttcct cgaaaaaacc attgccaccc tttccccgaa atgggcggca
    10861 aatcgctctc gaaatcgcta tgtgctaaat gcctatgagg cggcacagcc tagccgaacc
    10921 cataaggcaa gccgagagag caaaggggca aactctactg ttcgccaaag tgcggtcagc
    10981 ctacgggaac aagcccgagc cttagaccaa aatcacgata ttgtgatcgg cattctcgac
    11041 aaaatggaag agcgggtgat tggctcaaaa ggcattcata ttgaaccgca gccgctgacg
    11101 ttggcaggtg aagtccacga agaattagct gggcaaatcc gaaagctgtg ggcggaatgg
    11161 tcggtgaaac ctgatgtgac gggattatac actcgcccat tgctagaacg aatgctactt
    11221 cggacttggc tacgagacgg cgaagtcttt gttcagttgg tgaaaggcaa ggtggcaggg
    11281 ttagaacacg gctcacaggt tgctttttcc cttgaagcct tagagccgga ttttgtgcca
    11341 atgcaatccg atgaggcaaa aaacggcttg gtgcaaggcg tgtttctcaa tgcgtggcgg
    11401 aagccgactg cttaccaagt ctatttagac aatccgcaag aaagcaacgg aatgtacggc
    11461 aaagtgaaaa ccgtgccggc agacaatatg ttgcacctcg cctttcgcaa gcggttacat
    11521 caaattcgtg gtgtaagtat gttgcacggt gtgattgtgc gattggcgga tctgaaagaa
    11581 tacgaagaga gcgaacgagt tgccgctcgc attgccgccg caatgacgat gtacattaaa
    11641 aaaggcgatg cggcactgta tgatgacgac agtaacagcg atggcgaacg cctgtttgat
    11701 attgcccccg gtgcggtgat tgatgattta aaaccgggtg aagacatcgg cttaatcaat
    11761 tccaaccgcc cgaatgtgaa tttggaaact ttccgcaatg gacaactgcg agccactgcc
    11821 gccggtactc gttcgagcta ttccagcatc gcccgagact acaacggcac ttactctgca
    11881 cagcgacaag agctggttga aagttttgaa ggttatgcgg tgctacaaga tgcgtttgtg
    11941 gcggcaatca gccgcccgat ttatcgggaa tggctcaaaa tggcaatcgc ctcacaagcg
    12001 atcaaactgc cgcctgatat tgaccaaaac tctctcttta atgcggttta ttcaggtcct
    12061 gtaatgccgt ggattgaccc aatcaaagag gcgaatgcgt ggaaagaacg aattaaaggc
    12121 ggtttagcca ccgaagggca agcaatccga gccagtggca ataacccagc cgaagtcaaa
    12181 cggcaacgaa ttgtcgagat caaagaaaat caagccgaag ggctaaaatt tgataccgat
    12241 ctcaccaatt acggtgggca ggataaatct ttctccaatc aaaaagatga aattaacgaa
    12301 gatgaataac aggagggtgc gtgaaaacgt ggttcaacat tcaagccaaa gcgaatgaca
    12361 ccgccgaaat ctcaattttt gacgaaatcg gcttttgggg tgtcaccgcc caacaatttg
    12421 ctaaagactt aaaagccctt ggcaacaatt taaaacaaat caatctgcat atccactcgc
    12481 ccggtggtga tgtgtttgac ggcattgcca tttacaacct gctaaaaaat caccctgcta
    12541 acaagaccgt ctatattgac ggtcttgccg catcaatggc tagcgtaatt gcaatggcag
    12601 gtgatgaaat cattatgcct gaaaacgcta tgatgatgat ccacaaaccg tggggcattc
    12661 aaggcggtga tgcggatgat atgcgtaaat atgcggattt actggataag gttgaaagta
    12721 cactgattat ggcgtatgtc gccaaaacag gtaaatacga aaccgatttg gcagaaatgc
    12781 tgaaagaaga aacttggctc acaggcaaag agtgcgtgga gcaaggtttc gccgataagt
    12841 tagccgaacc ccttgtggcg atggcttgta tccaatccaa aaaattagag gactacacaa
    12901 aaatgcctga caaaatcaaa aatatgctat tcgcaccaca aggcaacgca ggtgcaaatc
    12961 caaaacatga acaacctcaa acaccaccac aagcgggtga aaatccgcaa aatgtggcaa
    13021 aacctgatgc aatggtggca ttagcccaac gcaatgcaac gattaaagcg acctttgccg
    13081 ctttcggcac acaatttgac ggcttgctgg cagaatgttt agctgatgtg tcaatgaccg
    13141 ctgagcaagc caaagacaag ctccttgcca aactgggcga aaacaccacc ccaagcgtac
    13201 cgcaaaacca cattcacgca ggtaacggta acatcgttgg cgacagcgtg aagcagtcgt
    13261 taatggctcg tgctggtcaa gataccgaca aaaccaacgc aagagataat gcctacaatg
    13321 caatgacctt gcgtgagttg gctcgtgcct cattggttga tcgtggcgtg ggtattgcgg
    13381 gctacacccc aatgcagatg gtcggtcttg cctttactca ttcgagctcc gacttcggtc
    13441 aaatcttgat tgatgtggct cataaatccc tactcaaagg ctgggaaacc gctaccgaaa
    13501 actacgagca gtttaccacc cgtggcactc ttactgactt ccgaccggca aaacgagtcg
    13561 gtttaggtga gtttggctac ctgccggaag tgggcgaagg tgaagaatac acctacggca
    13621 caatcggtga tgaaggtgca tctgttgcat tggcgactta cggacaactg tttagcatta
    13681 cccgtcaggc gattatcaat gacgatatgc atcttttaac taaaatccct gagaaaatgg
    13741 gtgcagcagc caaagcgact attaccaaac tggtgtttgc cttgattacc ggcaatgcga
    13801 cagcccaaga cggtaaaaag ctgtttgatg ctacacataa aaacagctta acgggtgcgg
    13861 cattgaatgt ggaaaacatt gacaaggcaa tccagttaat gaatggcttt gtaaacagcc
    13921 gtggtgaacc gctctctatt gagccagaat ttatgctgtt accaacctca ttgcatacca
    13981 aagcaaaaca gattcttggt tcgtcaagcg tggaaggtgc agacatcaac agcggtatca
    14041 ttaacccgat ccgtgatatt gtcagcccga ttaaatcgcc tcgcttacaa attgcagatc
    14101 cgaaatcatg gtacttgctc aataaagagg cgattgaagt ctcttatctg gacggggtgg
    14161 atagccctta catcgagcaa cagcacggct ttacggtgga cggtgtttcg accaaagtcc
    14221 gtatcgatgc tggtgtgaat gtgattgact accgtggtgt ggtgaaagtg accaacgctt
    14281 aatttaaaca atttaaaacc tgaccgcact tttaacagtg cggtttttta ttatccgaaa
    14341 aaaggaaaaa gagatatggc taaaaactat attcaagacg gcaataccgt gcgtttaact
    14401 gcaaccaaag cgattacttc cggcgatgtc attgtggcgg aggatttaat tgcgattgcg
    14461 gtttctgatg cggcaaaaaa tgatgcagta gttggcttaa ctaccggtgt ttttagcgta
    14521 aaagctaaac aagcagatga catcaaacaa ggtgcagtgt tgtactggtc tgaaacagag
    14581 ggcgcaactc tcaccgcagg ctcaaataaa cgacttggca ttgcgtggaa agactctggc
    14641 acatcatcta atcaagttga tgtgaaaatc aatgtctagc ccgtttgagc aggcaatagc
    14701 tgccgccgat caaactattc agcaaactat gatgagtgag tggttgattg gcggcaagcc
    14761 ttaccctgca acttttgatg aagcccccgc tatttttaac ggtttacact caaccgatga
    14821 cagagctatt cacggcacgg aacgcacact gaccctattt cgggcgagtg gctacaaacc
    14881 gagattggac gaccgagtga gcggaaatgg caagaaatac cttgttaaat cctatcactt
    14941 tgtcgatcag ttaatcgtat tgcaattgga gtaaacaatg ggttctcaag tgaccggttt
    15001 aaaagaactg caagcctccc tgaaaaaaat agctaggcaa accgtaccta aagcagccgc
    15061 tcaagcaatc cgtactgttg ggcggcaagc aatgaataag gcggttaaat cggtggcggc
    15121 agagattggc gtaaatcaaa agacaatcaa aggtagagca aaaatgacgg caaagcccac
    15181 gccgtcaaga ttgcaagcca cgattaaggt taatcgatca catatgccga tgattcgggt
    15241 actagagcgc aagtccaacc gcctgtcacc caccaaaggc agtattagag ttgggaaaca
    15301 cactgtacaa cgtggttttc gccaacgact cgccaatggg cgaacgcaca ttatgtaccg
    15361 gcaaggtcgt aagcgttacg gcattgatgt agcaaaagtg ccgttatccc aaccacttac
    15421 acaagcattt gatcgagaat tgaaaaacta tcccgaacaa gtgcaagcgg aattagctaa
    15481 acaaattgcg gggaaattat gaaaatccac acaaaaatcc gaaaagaagt ccttgaatta
    15541 ttacagacta aattgccgga aattgataat ttttataacg ggctgccaac ttttattgat
    15601 attgaggagg aacaacttgc agtatcggtt tatctcgatg atatcagtct gcaagaaata
    15661 actgtttgta ataatcaatg ggacgccaag ctcaatatta caatccatct gaaatctacc
    15721 gagagtgcag aagatgaatt agacgaatgg gcggaaaaaa ttcgtgaaat tatcgatgat
    15781 tatcccgaat ttgagcattt agagtcagtc gcgctctctc agtatcaata tgagcaagac
    15841 cagaatcagc gtacgtggca catggcgaca ttaatctttg atgttgagta ttaaacaaat
    15901 aatctctata ggagacttaa aatggcaaaa acaacaaaag tccaaggcac gaaatttaga
    15961 attagcgttg gacgtgaggc tcaaaaagca attaccgcaa ttaacttaaa tactgctact
    16021 ctaacgattg catcctcagg ctataaaaaa ggtgatgcaa tcgagcttac aggttgtggt
    16081 caattagatg gtatctaccc ggtgttatca gtaactaccg atcaggtaaa attatgcgaa
    16141 gaagtgaact ggacaggtaa agatttacca gctaattaca ccaaagccaa ggcggcacta
    16201 gtgcaatact cggagcaatt ctgcgcggta aaaaacattg aaaaatctga tgatactttg
    16261 agtaccgaag atgtaacaac ggtttgttca gagggcacag aaaccgagcc gggtgaaatt
    16321 gaatttggtt cgatcaaact cagtttcttc cacaagccta ctaccgaaat gcaaacccga
    16381 ttgcgcaaac tcttttacga caaatccacc tttgcctaca aactggaact accggataac
    16441 catggcacga cctatggcga aggctttatt gaggccggca acggtttctc gggcgaagtt
    16501 aagggtaagt atgaaggctc tgtatctatt aagccaagca aacgcgacta cttattagtt
    16561 taattgcaaa aaaaccataa aattcgaccg tttgtagaaa taacaagcgg tctttttata
    16621 tcagaatttt acaaaaggaa cgaacaatga cactgcgtga gaaactcctt gctaataaac
    16681 caaaattgca acctatcgaa atcaacggcg agacctacta cctgcgtgaa gctactgttg
    16741 gtgatatgaa caagcagatt tttgaaaccc gaagctggct cattcaacaa gctgaacaag
    16801 aaaatgttga attaccggca gaagatgatg aaacctttga tgaggctctc aaccgttttg
    16861 gcgaaaaata ccgccttgct caatcggttg cctaccgctt atgtgatgaa aacggtgtat
    16921 tactgtttaa tcctctcgac attaacgatc tgaatgccat tgccgaatta gacagtaaag
    16981 tgattatcga ctttaaccaa gccgtgtccg ccccaaaaga ctcagcgagc gaagaaagtt
    17041 ccaaataacc ctttcgctcg cactgggtaa aacacttgaa gaaatcgaac aaatgcccga
    17101 acgccacttt gccgaatatc ggcttttcta ccaagaacag cctttcggct tatggcgaga
    17161 cgattaccgc accgcccaac ttgcccactt aaccgcaatg ttcaaccgtg atccgaaagg
    17221 caaagctcca aaattagcgg agtttatgcc gttttttaat cggacagatg aggtggagga
    17281 aatagaagat gatggtgtgg cagattattt ggcgaaaagg taaagaaaac agcttgaaat
    17341 tccttgctct tggatatata tttcctcaaa gagaaggagg gaagtatgtt tgaagcacta
    17401 gaccgtttta tgattaatac gattaaaatt gcaattattg tatttttggt cgcttgcatc
    17461 tttattagta tgccgaactg gtggatagct tctatcttag tacttttccc gactgcctat
    17521 ttgcttgata aatactggtg gcgaaatacc gaaatgtatc gccgcaaaat ggataaatta
    17581 gttgaagaga tgaaaaataa tcgtcaaatc taaattaaca tcaattctag cccgctttat
    17641 gcgggctttt tatttggggt gaaaaagtga gtagctcaaa cagattaact attaccttag
    17701 atgtagaaaa ttctaagtta ctagctggat tcgcacaatc tgatacagta gcaaataagt
    17761 ttgctcgcag cttcattgtg aatatggatc aggctcagca aaaagcacgt caatttgctg
    17821 atagatcgac aaaatatcta aaaaatattg aacaagcagc aaataatctt aatagctctg
    17881 tatcaaaaga acgtttttgg caaattgcaa atcggttgca attcccgaca agtaaagtga
    17941 ttagttatgc caatagctac accgaactcg gtaataaact caaattagtc accgaaagtg
    18001 aatcccaaca cgcccgagca atggcggcgg tgtatgatat ttcgctcaaa accgcccaat
    18061 ctacacaggc aacctcttcg gtttatcaga cctttgctca aaatgcaaaa cagctcggta
    18121 tttctcaaaa cgatgtggca aaactaacgg aaacggtggc gaaatcagtg gcgatctctg
    18181 gtgcaagttc ggcaaccgct tcaaacgccc tagtgcaatt cagccaatcg ttgttaatgg
    18241 gtaagctcaa agcccaagaa tttaactcat tgatgaccca aacaccgtct gttattcagg
    18301 cgattgccaa agggttagga attactactg ccgaacttaa agcaatggtg gataacggtg
    18361 agatgtcggc tgaaaaaatg attgaggggc taaaaaaagc agagagttat gtaaacggac
    18421 agtacgccaa aacaaccact acaattagtg gagcaatgca aaatctttca actgcggctg
    18481 aaaagtgggt tggcgaaatg gatagtaccg ttggtgtgtc acagaaagcc gttgccgttc
    18541 tgaatgcgtt aaatgctaat tttgacacgg ttgctaaaac ggtacttgtc gccggtggag
    18601 cctttgctct ttttaaaggc tatatgaatg tacgcccatt tatcgagtca agagcggcta
    18661 tttatgaaaa tcaaaaagca attattgctg aaaatcaagc ccgccaacag gcaatggcga
    18721 ttcgtcagca agagttagta ggactgtctc aacaaaccgc tttaaaactg gaacaaacat
    18781 tacaaaccta caatcaaaat aaagccgaat tagaggcaat tgcagttaaa cagcagaaaa
    18841 ttacaaaaga acgggaagaa atcgcagtgg caattcaagc ggctgcaact cgttcggaaa
    18901 gattagcgtt atccgccgaa ttacaagcct tagatcaaaa ggaaatcacg ctcggacaac
    18961 agaaaatagc ggttgaacgc cagcaaattg cagcaaagca ggctctcaaa gtggcgtatg
    19021 ctgaaaatgc ggttgctcaa agtgcaatga gtgcaggtat gatcacagca accacaacaa
    19081 ccagagcaat gaatggtgtt ttagcggctg caagagctga attgaattta ctgaaagcag
    19141 cagcactgtc taacccatta atgacactcg caatggtggc tacaactgcc ggtactgccc
    19201 tttggggatt ttttgaaagt caaaaagcag ctcgtgaaga agccctccgc tacgctgaca
    19261 gcttagactc tgttcgagtc aatatcgaaa aaatgactaa ggctcaaact gatgcagaaa
    19321 tggttaaatt gtctcgttcg atcaaagaac aggaaacagc attagctaat ctgaaacaac
    19381 gccaagctga acttacacga gaaatagagc aaggagctac ggtttatgag gatgcgtttg
    19441 ccggcactgt gcgtgttacg atgagtgcgg aagagcttgc gaaaaaacaa gaagaattaa
    19501 cattagttac tgctgatgct gaaaaagctc aaaaaacctt gaattctagc ttagaggctc
    19561 aagaagcctt aaaagctcat attccgattg ctaacctacg agaggaattt gttaaattat
    19621 atcctcacat tgatgaaagc caaatcaaag ttgatggctt aaatattgct atcggtaatt
    19681 ttaccgtcaa atcaccggag atggttattg ctactaataa cattgctaat gctcttggtg
    19741 gcgttgccgg agaggctatg agagcggcta ttctagtcgc taatctgtca agtatgaagc
    19801 tggatgctaa cggtgctgca attatcgatc ctaaacatct tgaaaaaatc gagcaaattg
    19861 aacgtaacaa tgcgattggt tcggctaaag gtaaagataa aatcgcattg caagtaaaag
    19921 acgctctgat taaatcaggt atgaaagagg gcgatgccgg atacgagcga ctaaaagcag
    19981 catatgagca acaatttacg ttgcaaaatg cccctaaggg caagggtgga aaaaccaaag
    20041 ccgaaaaaga ggcagaaaaa gcggctaaaa agcaacaaag ttatcaaaac caagtggcgg
    20101 agatgacaaa tcgtttggca ggcttaaaag ccaatgcttc agatatcgcg attttcgggc
    20161 aagtctccga ctaccaagaa gtgcgtaaac tgactgaaga tattgcgatc aatgccgaaa
    20221 aatacaaagg ctacggtgag caaggtgtcg caaggcttaa agagttagcc agtcagttag
    20281 agtccgccca gcaacaagtc gctatttctc aatttgccta caatggcggt gagaaactca
    20341 aagcaatgga gtttgaatta accttgctcg gtaaaacccg ccaagagcaa gagttaatgc
    20401 agtacaacca cgaattagat cttgaagcag ctcggctcaa aatcggtatg gctgatgaaa
    20461 atattgcgaa gttagaccag gaaatcgtta agctaaaaga acgtcgagcg gaaatccaag
    20521 cacaagcaga acaagctcgt ggcagcttta aacaaggtat gttagatggt ttgaataata
    20581 tcgaagctga tgtcagcaat gtagcggcaa atgttgccaa tattactcaa aatacctttg
    20641 acggtatggc ggatagcttg actaattttg tgatgacagg taaagcggat ttccgtagtt
    20701 ttgctaattc catattatct gatcttagca aaatgattat caaaatgatg ttatttaatg
    20761 ctatcaaaca aggtgcaact atgttgtttg gctaccaagg accgactaca acggtaaatg
    20821 gtaatgctgt ttatgggtta ggtacttggg caacaggtgg ctacaccggc gatggtggta
    20881 aatacacccc agcgggtatc gtccacaaag gggaatacgt catcaccaaa gaggcaaccg
    20941 ctcgtcttgg tttggattac ctaaactatc ttaactatgg caaacgaggg ttttccagcg
    21001 gtggtggcgt tgctgtgccg agagtgccat cctcatctta tcaacctaaa tcagctcaaa
    21061 gtaatatcag tgttcaggtg attaataacg gagagccggt tgatgcaaaa gtcagccaga
    21121 aacagcaagg cgatcaaatg caaattaccg ttgagttaat gcgtgaaatt gcccgacagg
    21181 aggcaaacgg tatgatccaa aacaacttca gagctggagg agtatttgcc taatggaaac
    21241 attaaaatgg tgtgttcgca ccgatttagc ggttgaaaat acccctgaaa taatggaagt
    21301 caaattcggc gatggttata cccaacgctc gcccaaaggc ttaaacaatt tattacgagc
    21361 ctatacaggc acaatcaaag tgaaaaaggg ggaacattta gcggtggagg cattttttgc
    21421 caaacatcgt ggtgtttccc ctttttactt taaagatccg tacacacaac aaaacaaaaa
    21481 ggtagtgtgt agcagttggc ccgcaaaaat ggttggctta aaccattggg aatttagtgt
    21541 aacctttaag gaagtaccct aatgcctgtt agcatatcca atcaaatgaa actcga
//
LOCUS       DANLRW010000035        21141 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.035, whole genome shotgun sequence.
ACCESSION   DANLRW010000035 DANLRW010000000
VERSION     DANLRW010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 21141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21141
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.035"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..284
                     /locus_tag="PXA71_001097"
     CDS             <1..284
                     /locus_tag="PXA71_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5105219.1"
                     /translation="NLTVHKLIYIAPILIILQIMPWFYALQWLSTITAFLYLVIFATI
                     TVYANTALSNMLVKLDNGKNQGLMFGSSKLILAITTLGVMNVLPYIFLI"
     gene            complement(281..1414)
                     /locus_tag="PXA71_001098"
     CDS             complement(281..1414)
                     /locus_tag="PXA71_001098"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HDL5105220.1"
                     /translation="MLIFMMNEYSPNYYIGVMSGTSLDGVDIALLDFAKNPPKMTACD
                     FFPMPEELRADISALLKTGETNLQKLGEIDHRLGLLYAETINAFLAKNQLKAEDIQAI
                     GCHGQTVWHSPDSEYPFTTQIGDMNLVAEQTGITTIADFRRKDMAVGGQGAPLVPAFH
                     QAIFSDPNRLTVVLNIGGISNISVLNPNSPTVGYDVGAGNTLMDSWIEQHQGKRYDKN
                     GEWARTGKLNTELLATLLDESFFAKAPPKSTGRELFNLTWLAKKLENLTACQPQDVQR
                     TLAEFTAQSIANELLRFESSLPRLLLVCGGGSRNPLLMERISALLPEWEVTTTTEFGL
                     DIDYVEAAAFAWLAYQRIHNLPSNMPSVTGAKKAVSLGVIYPA"
     gene            complement(1606..2445)
                     /gene="queF"
                     /locus_tag="PXA71_001099"
     CDS             complement(1606..2445)
                     /gene="queF"
                     /locus_tag="PXA71_001099"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDL5105221.1"
                     /translation="MNYNDKSLSALKLGQKTEYKSEYDASLLQPVPRKLNRDSLGITQ
                     EQPFNRGADVWTCYELSWLNQNGLPQVAIADVAIDFKSENLIESKSFKLYLNSFNQTK
                     FSSIEEVGKTIQADLARCASGQVSVKIYQLSHYTQQPIVDFAGDCIDEQDIQIDSYAF
                     STHYLENIAEDELVEETLVSHLLKSNCLITSQPDWGSVQIRYKGKKLNREKLLRYLVS
                     FREHNEFHEQCVERIFCDLMQFAEPEKLTVYARYTRRGGLDINPFRSNFEEVPENLRM
                     ARQ"
     gene            complement(2450..2998)
                     /gene="gmhB"
                     /locus_tag="PXA71_001100"
     CDS             complement(2450..2998)
                     /gene="gmhB"
                     /locus_tag="PXA71_001100"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HDL5105222.1"
                     /translation="MGKKAIFLDRDGTINIDHGYVHQIDDFQFIDGVGKALKQLQDKG
                     YLLVLVTNQSGIARGYFSEAQFMQLTEWMDWSLDEDYGVVLDGIYYCPHHPEGKGEYR
                     KDCDCRKPKAGMFTQAIQDLNIDPSQSYMVGDKLEDILAAEAAGVKTKVLVRTDKAVT
                     EEGQAKADLVLDSLVDLVKYIK"
     gene            complement(2998..3465)
                     /gene="bcp"
                     /locus_tag="PXA71_001101"
     CDS             complement(2998..3465)
                     /gene="bcp"
                     /locus_tag="PXA71_001101"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDL5105223.1"
                     /translation="MNILQAGDKAPKFTLQNQADEPVSLSQFAGKKVLVYFYPKALTP
                     GCTTQACGLRDSKSELDELNVVVLGISTDLPKKLAQFVEKKALNFTLLSDPDHQVAEA
                     FGVWGEKKFMGKTYDGIHRISFLIDEQGGVEQVFDKFKTGEHHQMIVDYLRGR"
     gene            complement(3552..3749)
                     /locus_tag="PXA71_001102"
     CDS             complement(3552..3749)
                     /locus_tag="PXA71_001102"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105224.1"
                     /translation="MKFGYLNGVLEGKGKMRFDEAKLHAESEFEKYRIVQDRLFESDF
                     DKVLKEMLRSENQYRPSFSTT"
     gene            complement(3718..4200)
                     /locus_tag="PXA71_001103"
     CDS             complement(3718..4200)
                     /locus_tag="PXA71_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence RhuM family protein"
                     /protein_id="HDL5105225.1"
                     /translation="MIDKQIRNSTAEFLIFTQQNGAENITVRYEDNEIWLTQKLIAQL
                     FDCSTDNVSLHLKNIFNSRELDPNSVTEDFSVTAADVKNYRTKHYNFDAVISIGYRVN
                     SVRATQFRQWATKVLRNFAQKGYVIDRQRMENGTFLNEDYFEQLLAEIREIWLSERRS
                     "
     gene            complement(4343..5500)
                     /gene="hemW"
                     /locus_tag="PXA71_001104"
     CDS             complement(4343..5500)
                     /gene="hemW"
                     /locus_tag="PXA71_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HDL5105226.1"
                     /translation="MNLILPPLSLYIHIPWCVQKCPYCDFNSHAQKGLIPEQEYIEHL
                     LADLSQDLTAYRVAIGDRKLYSIFIGGGTPSLFSAEGIAYLLIEVEKRIAFEPNIEIT
                     LEANPGTAEAERFLGYAQGGVTRISMGIQSFEPEKLLKLGRIHDANEAKQAIKFAQNS
                     AKSGLQSFNIDLMHGLPNQSVKQALADLETGISLNPPHLSWYQLTIEPNTMFYYRKPT
                     LPDDDELWDIFEQGHQLLTNAGYEQYETSAYAKKGYQCRHNLNYWRFGDYLAIGCGAH
                     GKISYPTGEIYRFSKIKHPKGYMRGEYRYSQDLIELDDRPFEFFMNRFRLLEATPKQE
                     FEWFTGLDREVVRPTIDWALNQNYISETATHWQITQHGKLFLNELLEGFLE"
     gene            5722..7305
                     /locus_tag="PXA71_001105"
     CDS             5722..7305
                     /locus_tag="PXA71_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5105227.1"
                     /translation="MKKQFEHNESRRGFMKLIAGVGAGMAFSGTLGTFTPKAFAAPAA
                     GSTIEAGIAYPISTGFDPLTSSGASSMAANLHIFEGLVDLHPATRKPYLALAAAEPEK
                     IDDVTYRITLRDGAKFHNGNPVTTEDVVYSFERVLDPAKASLFAQFIPFIDTVKKVDD
                     KVVEFKLKYPFALFKERLTIVKIVPKAVVEAGQAAFDANPVGTGPYKFVSATKDDRIV
                     FEAFADYNGGYPAQVEKMTWFLLSDDAARVTAQESGRVQAIESVPYLDAERLKRKGTV
                     ESVQSFGLLFLMFNCEKAPFNNPKVRQALHYGLDTQKLIDVVFLGNAKAATSYVQDTH
                     PDYVKANSQYDFDKAKAEALLAEAGVTELKFELLATDHSWVKECAPLILESWNSLKGV
                     KVSLKHLQSGALYGTHVDKGAYEVVIAPGDPSVFGNDLDLLLSWWYRGDVWPKRRFRW
                     SETAEYAEVQKLLDEAAKNPAASKEAWAKAINIIAEQVPLYPIIHRKLPTAWNDKALT
                     GFQPLPTTGMSFIGVGRAK"
     gene            7517..8470
                     /locus_tag="PXA71_001106"
     CDS             7517..8470
                     /locus_tag="PXA71_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5105228.1"
                     /translation="MEIILRLLWRRLMALPVMILGVTALVFIVLQFTPGDPATVALGE
                     SASEAAKEIYREQHGLNDPLLVQYFRFLGNLFVLDFGMTTPPEQPIVDMIAKAFPLTL
                     QLTFIGVFLAAIVSFTLGVTAALYRDTWIDQLIRLISVAAVATPSFWLGILLIQYFSL
                     KLDWLPSGGFIPFSEDPKGYVNSMVLPSLALAVPVCASLIRVVRTTMVEEMDKDYVRT
                     AIGNGVPYSTVIRHNVLRNALITPVTVLGLRVGYLLGGAVVIEQIFDLPGMGKLIFNG
                     IVNHDLNLVQGVVLTIAFTFVLVNIIVDILYLLINPKIRSL"
     gene            8472..10442
                     /locus_tag="PXA71_001107"
     CDS             8472..10442
                     /locus_tag="PXA71_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/oligopeptide/nickel ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HDL5105229.1"
                     /translation="MFRQGLAARLASGGARFRALSTSSKIALLFIVFIALVAIFAPLV
                     APYDPLQTLRPVQAPSGDYLFGTDRLGRDIFSRMVWGARTSLFIGLGAVGVAILFGSI
                     LGATAATADKFGNEVIMRFMDILMAFPGIALAAVLLATFGNSVPVIIVTIAVVYTPQL
                     ARVVRANVVSQWEEDYVRAERVIGGSRTYILLKHVVRNTAAPVLVFATVMVADAIVFE
                     ASLSFLGAGVQPPFPSWGNILSEGRNLVLSGFWWATTFAGIMILLTVLALNILAEGLT
                     DALVNPKLKRSTQSKEDVAKPLATDVQEAMSETLALKRYLLKLHEKETTRTDRMQLNS
                     TAKPILQVKNLSIRFPNRYGETPLVDNISFTVHEGETMGLVGESGCGKSITAFSIMGL
                     LPKTAKITGEILFTDRSGKQHNLLESADLNALRGHEISMIYQDALSALNPSMRIKDQM
                     AQLISRGGKQSAETLLQWVKLDPEKTLNRYPHELSGGQRQRVLIAMALAREPKLLIAD
                     EPTTALDVTVQAEVIKLLNELREKLGFAMVFVSHDLALVAQIAHHITVMYAGQVVETA
                     PTTPLLANPTHEYTRGLLGSVLSTELRAERLYQIPGSVPSPFDFAKGDRFASRSLRPD
                     ANPEQHLKLVPTGDHPQHFWASHLEDPQSKEA"
     gene            10457..11263
                     /locus_tag="PXA71_001108"
     CDS             10457..11263
                     /locus_tag="PXA71_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5105230.1"
                     /translation="MSMKFIKEQPIIELSNIVVQFASRDGTLFNPKKFTAVNDVSLAI
                     HAGETVGLVGQSGCGKSTLASVMIGLQKPTSGTVKFNGLEMKYGSAEARKYFGSQVSV
                     IFQDPATALNPRMRVLDILKDPMDIHNILQPQEREKRVYDLLSRVGLPRSAALVEPTR
                     LSGGQKQRVAIARALALNPKLIVADEPTSALDVSVRAQVLNLLADLKKELNLAMVFIS
                     HDLQTVHQVSDRIVVMNGGKIVEMGDASDVFERPTQEYTRTLIEAAPSLL"
     gene            11326..12912
                     /locus_tag="PXA71_001109"
     CDS             11326..12912
                     /locus_tag="PXA71_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDL5105231.1"
                     /translation="MIQITQTINIDLLIVGSGIAGLSAAVEAKEKGINTLLISKSTIG
                     SGASYFPLKATLGIQVTGDEADKIHFKEDIENIGKGKINPNVVQAYIEDSPQAIELLH
                     RIGFQPWKRNDNRPACFAKYPRPIYLIKDWRESALRAKQILQEQHIAFYENATLLHIV
                     TDNNQVQGAVFSLTTSGQISYIFCKTKHLILAAGGIAGLYKDNLYPADVIGSLHYVAQ
                     QAGATLVNLAFIQFIPAFVEPKYKVLFGEHTLKYVTQITDSKGNNLFPHLNAEQFAKM
                     VLERSHYAPFSLDFAGVEFDLVMMKHLLENPHEKGIYLKYSPKLYEDTEEFYTVYLNW
                     LKNEVGIDLVQDKIAIKPFAHSCNGGIQINQWGESAVKGLFAIGEISHCIEGANRMGG
                     NSVGGGLVFAKRAVSEIVRSLEQNDLQKNSEISPLAMAEKALNQLANSTANLELTASE
                     VLSTIREKMALYANVYRTRSNLKLLLEELNRLEQEFDPIYHAQYQGIEIYNALKTAQL
                     VVNQMLNEQSLGAHYLDEQN"
     gene            12958..14340
                     /gene="nhaC"
                     /locus_tag="PXA71_001110"
     CDS             12958..14340
                     /gene="nhaC"
                     /locus_tag="PXA71_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL5105232.1"
                     /translation="MNNYLLKLKPMTAVILSLLTVFILGFTMIGLGWVPQISILAVIV
                     MLLLFGLINKIPFKNMQEGMASGLMSSIGAVYLFFFIGLLVSALMMSGAIPTLMYYGL
                     SVISPELFYISAFALSSVVGIALGSSLTTTATIGVAFIGMASAFGANPAIVAGAVVSG
                     AFFGDKTSPLSDTTTIAASVVGIDMFAHIRNMLYTTIPAWILTALFLWFLTEPTDAQN
                     LANIENLKTNLQETGLIHGYSLLPFVTLILMAIKRVNSIYIIVTTVTLSLIITYIHSS
                     PTLEQLGNYFFTSYKPVEGVDLGEVASLVSRGGINSMFFTITIVLLALSLGGLLQILG
                     ILPALLNGISGFLTSTGRVTLVVASTAVGINVLIGEQYLSLLLSGNTFRSTYERLGLE
                     VKNLSRTIEDAGTVINPLVPWGVCGVFISSVLNVPVLDYLPYAFFCYICLILTLIFGF
                     TGVTISKKAN"
     gene            complement(14383..15579)
                     /gene="ispC"
                     /locus_tag="PXA71_001111"
     CDS             complement(14383..15579)
                     /gene="ispC"
                     /locus_tag="PXA71_001111"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDL5105233.1"
                     /translation="MKKLVILGSTGSIGKSTLSVVEHNPNPNQYEVFALVGGKNVELM
                     LEQCRQYQPTFAAMDDEKSAQALKTALATLGSKTEVLAGQAAICELAAHSEVDMVMAA
                     IVGAAGLLPTLSAVKAGKTVLLANKESLVTCGQIFIDEARKSGAKLLPVDSEHNAIFQ
                     SLPPEAQQKVGFCPLAELGVSKIILTGSGGPFRTKPLNEFDAITPAQAVAHPNWSMGK
                     KISVDSATMMNKGLEYIEARWLFNATAEEMDIIIHPQSIIHSMVRYIDGSVIAQMGNP
                     DMCTPIAHTMAYPNRINAGVPPLDFFKLKELTFIEPDFARYPNLKLAIEAFAEGQYAT
                     TAMNAANEIAVEAFLNEQIRFTDIVNVNRTVVENIAPIQVSEIADVLHIDKLARELAK
                     QAVLQL"
     gene            complement(15698..17896)
                     /gene="relA"
                     /locus_tag="PXA71_001112"
     CDS             complement(15698..17896)
                     /gene="relA"
                     /locus_tag="PXA71_001112"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HDL5105234.1"
                     /translation="MVAIRYSHQLEPNNFELSSWCASLNMSPVTFEQIHNAWSYAQEK
                     LDTDYSLMWYGIEMVEVLHGLNMDDDSLVAAMLFPLVKHNVIDLVQLKEDFSNDIKNL
                     VKGVLEMENIRQLSANNVSDLQIDNIRRMLLAMVDDFRCVVIKLAERIAYLRDSNHHS
                     EEDTVLAAKECSHVYAPLANRLGIGQLKWELEDYCFRILHPVSYTQIAKFELGERRVD
                     RERYIANFVADLTACLSPEIKNVQIYGRPKHIYSIWKKMQKKRLRFNQLFDIRAVRVI
                     VPTLEDCYTALGIIHTKYTHLPEHFDDYIANPKPNGYQSIHTVVLGEGEKTIEVQIRT
                     QQMHDDAELGVAAHWKYKEGATAGRSGYEEKIVWLRKLLEWQNDLADSGDMVAEMRSQ
                     IFDDRVYVFTPRGEVIDLPQKATPLDFAYAIHSEIGHRCIGAKVAGRIVPFTYHLQMG
                     DQVEIITQKEPNPSRDWLNPNTGFVNTGKARSKIIAWFKKLDREKNIPIGKEALEAEM
                     EKFGFTLKQIEEYALPRYNLKQFDDLYAGIGGGDIRLHQLMHFLQSKLIKPTAEQEDE
                     AVLKQVNKNTNQPKPSKGYVIVEGVGNLMHSIARCCQPIPGDEIVGYITQGRGISIHR
                     ADCEQLFELQSLNPERVVEADWGEGYTSGLSLTIRVIANDRNGLLRDVSAIMANEKVN
                     VLGVSSRTDVKRSLATIDMEIQLNNVEILNKLLARIAQLDDVIEAKRLSS"
     gene            18150..19457
                     /locus_tag="PXA71_001113"
     CDS             18150..19457
                     /locus_tag="PXA71_001113"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDL5105235.1"
                     /translation="MTILALGINHKTASVGLREKVAFVDDKRKLALEQIQTSGLAESV
                     VILSTCNRTELYFHQPNISPREESEENIQWREQCFRWFAQIHQLDESELRECLYFKQN
                     LEAANHLMKVASGLDSLILGEPQILGQVKQAYQYSEDFYQHQQKAMSTKLSRLFQRTF
                     ATAKRVRSETEIGSQAVSVAYAACGLARQIFDNFGKLRFLLVGAGETIELVARYLIQH
                     GAKNIMLANRTHIRAEMLAEKLNAPMQILSLSALQLGLNQADVVISSTGSPDTLISKE
                     MVEIAQKQRQFDPLLLIDIAVPRDIDEKAGDLEGVYAYSVDDLQNIIQRNMAQREEAA
                     KQAAEIVKEESKAFFEWLKQQQSSDLIKRYRQDAEQTRQELLEKALQAISQGQDSQKV
                     LSELSYKLTNQLLHAPTQALQAMAKSGNSTGLQSFSRALRLEE"
     gene            19642..>21141
                     /gene="der"
                     /locus_tag="PXA71_001114"
     CDS             19642..>21141
                     /gene="der"
                     /locus_tag="PXA71_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDL5105236.1"
                     /translation="MTPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGH
                     ANIAGYDFIVIDTGGIDGTEEGVEEKMAEQSLLAIEEADVVLFLVDARAGLLPADVGI
                     AQYLRQREKTTVVVANKTDGIDADSHCAEFYQLGLGEVEQIAAAQGRGVTQLIEQVLA
                     PLGEQLNAEQFNQEQAGENAKNVANEETDEWDTEFDFENEEDAALLDEALAEEAEESI
                     EDKNIKIAIVGRPNVGKSTLTNRILGEERVVVYDMPGTTRDSIYIPMERDGQQYTIID
                     TAGVRKRGKVNLAVEKFSVIKTLQAIQDANVVLLTIEAREGISDQDLSLLGFILNAGR
                     SLVIVVNKWDGLSQDIKDQVKSELDRRLDFIDFARVHFISALHGSGVGNLFDSVKEAY
                     ACATQKTSTSMLTRILRMAADEHQPPLVNGRRVKLKYAHPGGYNPPIIVIHGNQVEKL
                     ADSYKRYLSNYFRKSLKIIGSPIRILFQEGNNPFAGKKNKLTPSQLRKRK"
BASE COUNT         6057 a         4563 c         4237 g         6284 t
ORIGIN      
        1 taaatctgac agtacataaa cttatttata ttgcaccaat actgattata cttcaaataa
       61 tgccttggtt ttatgcactc caatggcttt caaccatcac tgcatttctc tatttagtga
      121 tttttgccac tattaccgtg tatgcgaata cggcactatc taatatgcta gtgaaattag
      181 acaatggtaa aaaccaaggc ttaatgtttg gaagctctaa attaatttta gctattacca
      241 ctctcggagt aatgaatgta ttaccttaca ttttcttaat ctaagcaggg taaatcacgc
      301 ccaaactcac ggcttttttt gctcctgtca cgctaggcat attactgggt aaattatgga
      361 ttcgctggta agctaaccaa gcaaaagcgg cagcctctac ataatcaata tctaaaccaa
      421 attctgtagt ggttgtaacc tcccactcgg gaagtaaagc agaaatccgt tccattaata
      481 acggatttct tgacccacca ccacaaacta aaagcaagcg aggcagagag ctttcaaagc
      541 gtaataactc attggcaata ctttgagcag taaattctgc cagcgtgcgt tgcacatctt
      601 gtggctgaca agcggtcaaa ttttccaatt tttttgcaag ccacgttaaa ttaaacagct
      661 cccgcccagt gcttttaggc ggggctttag caaaaaacga ctcgtctaat aacgtcgcta
      721 acagttcagt attgagcttg cccgttctcg cccattcgcc gtttttatcg tatcttttgc
      781 cttgatgttg ttcgatccaa ctatccatca aagtatttcc ggctcctaca tcataaccaa
      841 ctgtagggga attgggattt aacaccgaaa tattgctgat gccgccaata ttcagcacca
      901 ctgttagacg atttggatcg ctaaaaatag cttgatgaaa tgccggcaca agcggagccc
      961 cttgcccacc tactgccata tctttacgcc gaaaatcagc gatagtggta ataccggttt
     1021 gctctgccac caaattcata tcgccaattt gggtggtgaa gggatactca gaatccggtg
     1081 aatgccacac cgtctgcccg tgacaaccta tggcttgaat atcttctgct tttagctgat
     1141 ttttcgctaa aaacgcattg atcgtttctg cataaagcaa gcctaaacgg tgatcaattt
     1201 cccccagttt ttggagattg gtttcgccgg ttttaagtaa cgcagaaata tccgcccgta
     1261 attcctccgg cattggaaaa aaatcacaag cggtcatttt cggtggattt tttgcaaaat
     1321 ccagcaaagc aatatccacc ccatcaaggc tcgtgccgga cattacgcct atatagtaat
     1381 ttgggctata ttcattcatc ataaaaatca acatctgcta tttgttactt ttctttgctt
     1441 tgccaaagaa aagtaaccaa aagaaaggca acccgagctt caccgctatc ctcgcttagt
     1501 ttgaattggc ttaacggcaa atttacattc gctccgctca gagtaaattt acctaccaat
     1561 tcaaacacgc tcaggcggtt cagacgggaa caaaaaacaa caaaatcatt ggcgtgccat
     1621 tcttagattt tccggcactt cctcaaaatt cgatctaaac ggattgatgt ctagcccgcc
     1681 tcgtctggtg tagcgtgcgt aaactgttaa tttttccggc tcggcaaatt gcattaaatc
     1741 acagaaaatg cgttccacac attgttcgtg gaactcatta tgctcacgga acgacactaa
     1801 ataacgtaac agtttttcac ggtttagctt tttgcctttg tagcgaattt gcacacttcc
     1861 ccagtcaggc tgtgacgtaa ttaagcagtt agatttgagc aaatggctga ctaaggtttc
     1921 ttccaccaac tcatcttctg caatgttctc taaataatga gtcgaaaacg cataactgtc
     1981 gatttgaata tcttgctcat caatgcaatc gcctgcaaaa tcaactatcg gctgttgcgt
     2041 gtagtgtgat aattggtaaa tttttaccga aacctgaccg cttgcacagc gagccagatc
     2101 cgcttgaatc gttttcccaa cttcttctat tgagctaaat ttggtttggt taaaactgtt
     2161 caaatagagc ttgaaacttt tcgattcaat taagttttcg ctcttaaaat caatggcgac
     2221 atctgcaatc gctacttgcg gtagcccatt ttggttcaac caagatagct catagcaagt
     2281 ccacacatca gcccctcggt taaaaggctg ctcttgtgta atgcctaaac tatcacggtt
     2341 taatttacga ggaacaggtt gcaaaagcga ggcatcatat tcgcttttgt actcggtttt
     2401 ttgccctaat ttcagggcgg aaagggattt atcgttataa ttcattgctt tatttaatat
     2461 attttactaa atcaactaaa ctatctaaca ccaaatcggc tttagcctga ccctcttccg
     2521 tcactgcttt gtcagtgcga accagcactt tggttttcac gccggcggct tctgcggcaa
     2581 ggatatcttc taatttatcg cccaccatat aagattggct tgggtcgatg tttaaatctt
     2641 gaatcgcttg agtaaacata cctgctttag gcttacggca atcacaatct ttacggtatt
     2701 cgcctttgcc ttcggggtga tgtgggcagt agtaaatacc gtctagtacc acgccataat
     2761 cttcatcgag cgaccagtcc atccattcgg ttagttgcat aaattgtgct tcgctaaaat
     2821 agcctcgggc aatgccagat tgattggtta ccagcaccaa taaataacct ttgtcttgta
     2881 gctgttttaa cgccttgccg acaccgtcaa taaattgaaa atcatcaatt tgatgcacat
     2941 agccgtgatc gatattaatt gtgccgtcac ggtctaaaaa aatggctttt tttcccatta
     3001 gcgaccccgt agataatcca cgatcatttg gtgatgttcg ccggttttaa atttatcaaa
     3061 cacttgctca acccccccct gctcatcaat taaaaaactg atgcgatgaa tgccgtcata
     3121 ggtttttccc ataaatttct tttcgcccca tacaccaaag gcttctgcaa cttggtgatc
     3181 cgggtcagat aataaggtaa aattaagtgc ttttttctct acaaattgag ctaatttttt
     3241 cggtaaatcg gtgctaattc cgagaacaac cacattgagc tcatcaagtt ctgatttgct
     3301 gtcacgcagt ccgcacgctt gcgtagtgca accgggtgta agagctttcg gataaaaata
     3361 aaccagtact tttttgccgg caaattgaga gagagaaacc ggctcgtcag cctgattctg
     3421 aagggtaaat ttaggggctt tatcgcctgc ttgtaagata ttcatttgta atttttccat
     3481 aaaaaataac cgcttgcatt atacacggca agcggtcaaa cttggcaaaa aatttgcaaa
     3541 atgcggttgt tttatgttgt tgaaaatgat ggacggtatt gattttccga acgcaacatt
     3601 tctttcaata ccttgtcaaa atcgctttca aataatctgt cttgaacaat gcggtatttc
     3661 tcaaattcgc tttctgcgtg caatttcgct tcatcaaaac gcattttgcc tttgccctca
     3721 agaacgccgt tcagataacc aaatttcacg aatttctgcc agcaactgct caaaataatc
     3781 ttcatttaaa aatgtaccat tttccattct ttggcggtca atcacatagc ctttttgggc
     3841 gaaattccgt aatactttag ttgcccattg gcgaaattgt gtcgcccgca ccgagtttac
     3901 cctatagcct atcgaaataa cggcatcaaa gttgtagtgt ttggtacgat aatttttgac
     3961 atctgcggca gttaccgaga aatcctcggt aactgaattt ggatcgagtt ccctactatt
     4021 aaaaatgttt tttaaatgca aagaaacatt atctgttgag caatcaaaaa gctgagcaat
     4081 taatttttgc gtaagccaaa tttcgttatc ttcatagcga acggtaatat tttctgcccc
     4141 attttgttga gtaaaaatca aaaattcggc ggtactatta cggatttgtt tatcgatcat
     4201 aagctctcct tattgtgaag gctatgctac taaatactgt ttttttgtct agtaaaaaat
     4261 gaggattttt cgacgcagat cacaaaaaac gcctgtaatt tagcattaca atgcggtctt
     4321 tttttagtcg tttttttgca aattattcca aaaatccttc cagtaattca tttaaaaaca
     4381 atttaccgtg ttgggtaatt tgccaatggg ttgcggtttc ggaaatatag ttttggttta
     4441 acgcccaatc gattgtcggg cgaacaactt ccctgtctaa ccctgtaaac cattcaaatt
     4501 cttgttttgg tgtcgcttca agtaatctaa agcggttcat aaaaaactca aacgggcggt
     4561 cgtctaattc aatcaaatct tggctgtagc gatattcacc tcgcatataa cctttcgggt
     4621 gtttgatttt gctaaagcga taaatttccc cggtcggata tgaaattttg ccgtgagcgc
     4681 cacaaccaat cgccaaataa tccccaaatc gccaataatt taaattgtgt ctgcattggt
     4741 agcctttttt ggcataagcc gaggtttcat actgctcata gccggcattc gttaaaagtt
     4801 gatgcccttg ctcgaaaata tcccataact cgtcatcatc aggcaaggtt ggcttacgat
     4861 aatagaacat cgtattcggc tcaatcgtga gctgatacca cgataaatgc ggtggattga
     4921 gtgaaatccc tgtttctaaa tccgccaagg cttgtttaac cgattggttt ggtaagccgt
     4981 gcattaaatc aatgttgaaa ctttgcaagc ccgattttgc agaattttgg gcaaatttaa
     5041 tcgcttgttt tgcttcattt gcatcgtgaa tccgtcctaa tttcaataat ttttccggct
     5101 caaaactttg gattcccatt gaaatgcggg ttacgccacc ttgtgcgtaa cctaaaaatc
     5161 gctctgcctc tgcggttccc gggttcgctt ccagtgtaat ttcgatattt ggctcgaatg
     5221 caatccgttt ttctacttca attaataaat aagctatccc ttccgctgaa aataagctcg
     5281 gggtgccgcc gccaataaaa atagaatata atttacgatc acctattgcc actcggtaag
     5341 cggtcaaatc ttgggataaa tctgcaagta aatgttcgat atattcttgc tcgggaatta
     5401 atcctttttg agcgtgcgag ttaaaatcgc aataagggca tttttgcacg caccaaggga
     5461 tatggatata aaggcttaaa ggcggtaaaa tcaggttcac tgtcaatttt tcatttatga
     5521 ttaaattggc gaataataac gaaaagcacg tgaagtgaaa agcaaagatt ttcgtgagct
     5581 agatcacaaa ttcaataatt cttgctttac cactttgaca ttaatgatat gataaattca
     5641 attcaaaaaa gtgcattttt tgataaattc acttcagcaa ataataccgc ccctatcata
     5701 aaaacttaaa ggagctttaa gatgaaaaaa cagtttgaac acaacgaatc ccgccgtggt
     5761 tttatgaaac taattgcagg tgtcggtgcc ggtatggcat ttagtggcac tttaggtaca
     5821 tttacaccta aagcatttgc agcccctgcc gccggctcaa cgattgaggc cggtatagct
     5881 tatcccatat caaccggatt tgacccgctt acctcaagcg gtgcatcctc aatggcggca
     5941 aacctccata tttttgaagg cctcgtggac ttacatccag ccactcgcaa accatattta
     6001 gcattggcag cagcagagcc tgaaaaaatt gatgatgtaa cctatcgaat tactttacgt
     6061 gacggggcta aattccacaa tggtaatccg gttaccactg aagacgtagt ttactcattt
     6121 gaacgtgtat tagacccagc taaagcatca cttttcgcac aattcattcc atttattgac
     6181 actgtgaaaa aagttgatga caaagtggtt gaattcaaat tgaaatatcc atttgcgtta
     6241 ttcaaagagc gcctaaccat tgttaaaatc gtaccaaaag cagtggtaga agccggtcaa
     6301 gctgcatttg atgctaatcc agtggggact ggcccatata aatttgtatc cgcaactaaa
     6361 gatgatcgta ttgttttcga agcatttgca gattataacg gtggctaccc ggcacaagtc
     6421 gagaaaatga cttggttctt actttctgat gatgccgctc gtgtaaccgc tcaagaatct
     6481 ggccgtgttc aagcaattga gtctgtgcct tacttagatg cagaacgctt aaaacgtaaa
     6541 ggtaccgttg agtcagtaca atcattcggc ttactgttct taatgtttaa ctgtgaaaaa
     6601 gcaccgttta acaacccgaa agttcgccaa gcgttacatt atggcttaga tacccaaaaa
     6661 ttaattgatg tggtgttctt aggcaatgca aaagctgcta catcttacgt gcaagatact
     6721 cacccggatt atgtgaaagc aaattcgcaa tatgatttcg ataaagcgaa agccgaagcg
     6781 ttattagcag aagcgggtgt gacagagtta aaatttgaat tgttggcaac cgatcactct
     6841 tgggtgaaag aatgtgcgcc attaattctt gaatcgtgga acagcttaaa aggcgtgaaa
     6901 gtttcactca aacacttaca atcaggtgca ttatatggca cacacgttga taaaggtgca
     6961 tacgaagttg tgattgcacc tggcgaccca tcagttttcg gtaatgactt agacctatta
     7021 ttaagctggt ggtatcgtgg tgatgtatgg ccgaaacgtc gtttccgctg gtctgaaaca
     7081 gctgaatatg cagaagtaca aaaactgctt gatgaagcgg ccaaaaatcc tgctgcttct
     7141 aaagaagcct gggcgaaagc aatcaatatt atcgctgaac aagtgcctct ttacccaatt
     7201 attcaccgta aattgccaac tgcgtggaat gataaggcat taacaggttt ccaaccatta
     7261 ccaacaacag gtatgtcatt tatcggtgtt ggtcgtgcta aatagtcgta acggctagct
     7321 aaatgcaagc ggtaatattt tacaaaaaat ttaccgcttg cataaataaa aatcaaaatg
     7381 atgtaatatt cgtcttatat cactcagaat tcttaccatt tctatatttt catttataat
     7441 cctacatatc actatattag cttgtaggta aacttagatt taattttgga gtgtaactac
     7501 actcaaggag aagaaaatgg aaattatact ccgattatta tggcgtcgcc taatggctct
     7561 gccggtaatg atcttaggcg taactgcctt ggtatttatt gttttacaat tcacccccgg
     7621 agatccggca accgttgctc tcggtgaaag cgccagcgaa gccgctaaag aaatctatcg
     7681 tgaacaacat gggttaaatg atccattgct tgtacaatat tttcgctttt tagggaattt
     7741 attcgtatta gatttcggta tgacaacccc tccagaacag cctattgttg atatgattgc
     7801 taaagcattc cctttaacat tacagcttac ctttattggg gtcttcttag ctgctatcgt
     7861 ctctttcaca ttaggtgtaa cggcagcact ttaccgtgat acttggattg atcaattaat
     7921 ccgtttaatc tcggttgccg ctgttgccac accttctttc tggttgggta ttttattgat
     7981 tcaatacttc tccttaaaat tagattggtt gccttcaggc ggttttattc catttagcga
     8041 agatccaaaa ggctatgtaa actcaatggt tctcccttca ctcgctttag ctgttcctgt
     8101 atgtgcctca ttgatccgtg tcgtgcgtac aacaatggta gaagaaatgg ataaagatta
     8161 tgttcgaaca gccatcggta atggtgtacc ttactcaacg gtgattcgcc acaacgtgct
     8221 tcgtaatgcc ttaattactc cggtaacagt attaggttta cgggttggtt atttattagg
     8281 tggtgcagtt gtgattgaac agatcttcga cttaccggga atgggtaaat taattttcaa
     8341 cggtatcgtc aatcacgact tgaacttagt gcaaggtgta gtattaacta tcgcatttac
     8401 tttcgtgttg gtgaatatca ttgttgatat tctttacttg ctcattaatc caaaaattcg
     8461 gagtttataa tatgtttcgc caaggattag ctgctcgact tgcttcaggc ggtgcaagat
     8521 ttagagcatt atcaaccagc tcaaaaatcg ccttactctt tattgtattt atcgcattag
     8581 tcgctatttt tgcaccatta gtagcgcctt atgacccact gcaaacgcta cgtccagtgc
     8641 aagctccaag cggtgattat ttattcggta cagaccgttt aggacgtgat attttctcgc
     8701 gtatggtatg gggagcaaga acatctctct ttatcggttt aggtgcggta ggcgttgcga
     8761 ttctattcgg tagtatttta ggggcaactg cggcaaccgc cgataaattc ggtaacgaag
     8821 tgattatgcg ttttatggat atcttaatgg cattcccggg tatcgcatta gctgctgtat
     8881 tacttgccac tttcggtaac tctgtacctg tgattatcgt gactattgcg gttgtttaca
     8941 ctccccaact tgcccgagtg gtgcgtgcta acgtagtatc tcaatgggaa gaagattatg
     9001 tgcgtgccga gcgtgtaatt ggtggtagcc gtacttatat tctattaaaa cacgttgtgc
     9061 gtaatactgc tgcaccggtt ttagtattcg caacagtgat ggttgctgat gccatcgtat
     9121 ttgaagcatc actttcattc ttaggtgcag gtgtccagcc tccattccca tcttggggaa
     9181 atatcttatc tgaaggtcgt aaccttgtat taagtggctt ctggtgggct acaactttcg
     9241 cagggattat gattttatta accgtacttg cgttaaatat ccttgctgaa ggcttaaccg
     9301 atgcgttagt aaatccaaaa ctaaaacgtt caactcaaag taaagaagat gtcgcaaaac
     9361 cattggcaac agacgttcaa gaagcaatgt ctgaaactct tgcgttaaaa cgttacttac
     9421 tcaaattaca cgagaaagaa acgacccgta ctgaccgtat gcaattaaac tcaacggcca
     9481 aaccgatttt acaagtgaaa aacttatcaa tccgtttccc aaatcgttat ggtgaaactc
     9541 cgcttgttga taatatcagc tttactgttc acgaaggcga aaccatgggc ttagtgggtg
     9601 aatctggttg tggtaaatca atcaccgcat tctcaattat gggtttatta ccaaaaactg
     9661 caaaaatcac tggtgaaatc ctctttaccg accgttcagg taaacaacac aatcttttag
     9721 aatcagccga tttaaatgcc cttcgtggtc acgaaatctc gatgatttac caagatgcat
     9781 taagtgcgtt aaacccatca atgcgtatta aagaccaaat ggcacaatta atcagccgtg
     9841 gtggtaaaca atcagcagaa acattattgc aatgggtaaa acttgacccg gaaaaaacgc
     9901 tcaaccgtta tcctcacgag ttatctggag gacaacgtca gcgtgtatta attgcaatgg
     9961 cacttgctcg tgaaccgaaa ctattgattg ctgatgaacc aacaacagca ttagacgtaa
    10021 ccgttcaagc tgaagtgatc aaattattaa acgaattacg tgagaaactt ggatttgcaa
    10081 tggtattcgt gagccacgac ttagctttag tggcacaaat cgctcaccac atcacggtaa
    10141 tgtatgctgg tcaagtggtt gaaactgcac caactacgcc attattggca aacccaacac
    10201 acgaatacac acgtggatta ttaggctcgg tactttctac cgaattgcgt gcagaacgcc
    10261 tataccaaat tccgggcagt gtgccttcac catttgattt tgcgaaaggt gaccgttttg
    10321 cgagtcgttc attaagacca gatgcaaacc ctgaacagca cttgaaatta gtgccaaccg
    10381 gtgatcaccc acaacacttc tgggcttcac acttagaaga tccacaatct aaagaagcat
    10441 aaaggagagc aatacgatga gtatgaaatt tatcaaagaa cagccaatta ttgaactgtc
    10501 taatattgtt gtgcaatttg cttctcgtga cggcacctta tttaacccga aaaaattcac
    10561 ggcggtaaat gatgtcagcc tagcaattca cgccggtgaa acagtcggtc tggttggaca
    10621 atctggttgt ggcaaatcta ctttagccag tgtgatgatc gggcttcaaa aaccaacctc
    10681 cggcacagta aaatttaacg gcttagagat gaaatatggc agtgcggaag ctcgcaaata
    10741 tttcggtagc caagtgtcag taattttcca agacccggca accgccctaa atccgcgtat
    10801 gcgtgtgttg gatattttaa aagatccgat ggatattcat aatatcttac aaccgcaaga
    10861 acgtgagaag cgggtttatg atttgctctc tcgagtcggt ctacctcgtt cagcggcgtt
    10921 ggtcgagcca acccgattat ctggtgggca aaagcaacgt gtagcgattg ctcgtgcatt
    10981 ggcattaaat ccgaagctga ttgtggctga tgaaccaacc tctgcacttg acgtatcggt
    11041 tcgagctcaa gtactgaacc tgctggcaga cttgaaaaaa gaactcaatt tagcgatggt
    11101 atttatctct cacgacttac aaaccgttca ccaagtttca gaccgcattg tggttatgaa
    11161 cggcggtaaa attgtggaaa tgggcgatgc ttcagacgta tttgaacgcc caacgcaaga
    11221 gtacacccga accttaattg aagcagcacc atctttatta taattgtgct ttgtgcctac
    11281 aagcggtaaa atttttcgca aattttaccg cttgtgtttt tatttatgat ccaaattacc
    11341 caaaccatta acattgattt attaattgtc ggctctggca tcgctgggct ttctgctgca
    11401 gttgaggcaa aagaaaaagg cattaatacc ttactgatta gcaaatctac gattggctcg
    11461 ggagcgagct actttccgct taaggcaaca cttggcattc aagtaaccgg cgatgaagcc
    11521 gataaaattc actttaaaga agatattgaa aacatcggca aaggcaaaat caaccctaat
    11581 gtggtacaag cctatatcga agattcacca caagcgattg aactactcca ccgtatcggc
    11641 tttcagcctt ggaagcgtaa cgacaaccgt ccggcttgtt ttgccaaata ccctcgccca
    11701 atttatttaa ttaaagattg gcgggaatct gccctacgag cgaaacagat tttgcaagag
    11761 caacacattg ctttctatga aaatgctacc cttttacaca tcgtcacaga caataaccaa
    11821 gtgcaaggtg cggtattttc gctcactaca agcggtcaaa tttcctatat tttttgcaaa
    11881 accaagcatc ttattttagc cgcaggcggg attgctgggc tgtataaaga taatctctac
    11941 ccggctgatg ttatcggttc acttcattat gtggcacaac aagccggggc aaccttggtt
    12001 aatcttgcct ttattcagtt cattcctgcc tttgtcgagc caaaatacaa ggtgctattt
    12061 ggcgaacata cattgaaata tgtcacccaa atcaccgatt ctaagggtaa caatctattt
    12121 ccacacttaa atgccgagca atttgcaaaa atggtgctgg aacgtagcca ttatgctcct
    12181 ttcagccttg attttgccgg cgtggagttc gatttagtga tgatgaaaca tttgcttgaa
    12241 aaccctcacg aaaaaggcat ttaccttaaa tacagcccca aactgtatga agacacggaa
    12301 gagttttata ccgtctattt gaattggctc aaaaatgaag tcgggattga tttagtgcaa
    12361 gataagattg caatcaagcc gtttgctcat agctgtaacg gcggcattca aattaatcaa
    12421 tggggcgaaa gtgcagtaaa agggctattt gcgattggtg agatttctca ctgcattgaa
    12481 ggggcaaacc gtatgggtgg taactcagtc ggcggtggct tagtgtttgc caaacgtgcg
    12541 gtatcggaaa ttgttcgttc gctagaacag aatgatttgc aaaaaaacag cgaaatctca
    12601 ccgcttgcaa tggcagaaaa agcattaaat cagcttgcta attcaactgc taatctagaa
    12661 ctaactgcca gtgaagtgct ttctactatt cgagagaaaa tggcgttata cgccaatgtg
    12721 taccgcactc ggagcaacct caaactacta cttgaggaat taaaccgttt ggaacaagaa
    12781 tttgacccaa tctatcacgc tcaatatcaa ggcattgaaa tttacaatgc gttaaaaacc
    12841 gctcaattag tggtcaatca aatgctaaat gagcagagtt taggcgcgca ctacttagat
    12901 gaacaaaatt agtctataat agccaactta tttaaaaata ataaattagg agtataaatg
    12961 aataactacc tacttaaatt aaaaccaatg acagcggtca tactttcgct tttgacggtc
    13021 tttatcttag gttttacaat gattgggctt ggctgggtgc ctcaaatttc aattctagcc
    13081 gtgattgtaa tgctgctact tttcggctta atcaataaaa ttccgtttaa aaatatgcaa
    13141 gagggtatgg caagcgggct gatgtccagt attggtgcgg tttacctatt cttttttatt
    13201 ggattattgg tttcagcttt gatgatgtct ggtgcgattc caaccttaat gtattatggc
    13261 ttaagtgtga tttcacctga attattttac atttctgcat tcgcattaag ttctgtagta
    13321 ggtattgcgt taggcagtag tttaaccaca accgccacca tcggtgttgc ttttatcggt
    13381 atggcttctg ctttcggtgc gaaccctgcg attgtagcag gtgcggtggt ttcaggggcg
    13441 ttttttggcg ataaaacctc tccactttca gacactacta ccattgctgc ttccgtagtg
    13501 ggcattgata tgttcgctca tatccgtaat atgctttata ccaccatccc tgcgtggatt
    13561 ttaacagcat tattcctttg gtttttaacc gaacctactg atgcacaaaa tttagcaaat
    13621 atagagaacc taaaaaccaa tttgcaagaa acaggattaa tacacggcta ctctttgcta
    13681 ccttttgtta cgttaatttt aatggcaatt aagcgtgtta attcaattta tattattgta
    13741 actacagtaa cactctcgct aattattacc tatatccaca gttcgccaac ccttgaacag
    13801 ctagggaatt atttctttac cagctataaa cctgttgaag gcgtagattt aggcgaagtg
    13861 gcatcattag tctctcgtgg tggcattaat agtatgttct ttaccatcac tattgtattg
    13921 cttgcgttaa gtttaggtgg tcttttacaa atcctcggca ttttaccggc actacttaac
    13981 ggcattagcg gctttttaac cagcacagga cgtgttactc ttgtagttgc cagcactgcg
    14041 gtgggaatta acgtcttaat cggtgagcaa tatttgagct tattgttatc aggtaatact
    14101 ttccgctcaa cttatgaacg tttaggctta gaagtgaaaa acttatctcg caccattgaa
    14161 gatgcaggca cggtaatcaa cccattagtc ccttggggcg tgtgcggtgt gtttatcagt
    14221 agcgtattaa atgtaccggt gttagattat ctaccatacg cattcttctg ttatatctgt
    14281 ttaatcctta ccttaatttt tggatttacc ggggtaacaa tcagtaaaaa agctaactaa
    14341 tatgtgaaaa atgcctacaa atttgtaggc attttctttt cattagagct gaagaacagc
    14401 ttgtttggct aactctctgg cgagtttatc aatatgcaat acatcagcaa tttcactgac
    14461 ttgaattgga gcaatatttt ccaccaccgt tctattcacg ttcacaatat ccgtaaagcg
    14521 gatttgctcg tttaaaaacg cctcaacggc aatttcattg gcggcattca tcgctgttgt
    14581 cgcatactgt ccttctgcaa aagcctcaat cgctaatttt aagttcgggt aacgggcaaa
    14641 atccggctcg ataaaggtta gctcttttaa tttaaagaaa tctaatggtg gcacaccagc
    14701 attaattcgg tttggatatg ccatcgtgtg agcaatcggc gtacacatat ccgggttgcc
    14761 catttgagca atcaccgagc catcaatata acgcaccatc gaatgaataa ttgattgtgg
    14821 gtgaatgatg atatccattt cctcggctgt tgcattaaac aaccagcggg cttcaatata
    14881 ctccaagcct ttgttcatca ttgtggctga atcgactgaa attttcttac ccatagacca
    14941 attggggtga gcaactgctt gagccggtgt aatcgcatca aattcattta atggcttagt
    15001 acggaacggt ccacccgatc ctgttaaaat aattttactg acacccagtt cagcgagtgg
    15061 acaaaacccg actttttgct gtgcctccgg tggaagcgat tggaaaatcg cattgtgttc
    15121 actatctacc ggtaagagct tcgcaccgga tttacgagcc tcatcaataa aaatttgccc
    15181 acaggttacc agcgattctt tatttgccaa caatacggtt ttacccgctt tcaccgcaga
    15241 aagtgtcggt aataaccctg ctgctcctac aatagcagcc attaccatat ccacttcgga
    15301 atgtgcagca agctcacaaa tagctgcttg accggctaac acttcagttt tagaccccaa
    15361 agttgccaat gccgttttta atgcttgtgc ggatttttca tcatccattg ccgcaaaagt
    15421 cggctgatat tgacgacatt gctccagcat taattcaaca ttctttccac caactaacgc
    15481 aaacacctca tattggtttg ggtttgggtt atgctcaact accgataaag tgcttttacc
    15541 gatagaacct gttgaaccta aaatcactaa ttttttcatt ttgtttctct ttatctaatg
    15601 actgataagg gcgaaagatt tttcgcccct acgccgtaat tatgcggata ctcattcgtt
    15661 gtttgtaaat tgtttagcaa aaacaaccgc ttgtagatta actcgaaagc cgttttgctt
    15721 cgataacatc atctaattga gcgatacgag ccaataattt attcaaaatt tcaacgttgt
    15781 taagctgaat ttccatatca atggtggcaa ggctacgttt cacatcggtt cggctggaaa
    15841 cgcctaacac gtttactttt tcatttgcca taattgcact gacatctcgc agtaagccgt
    15901 tgcggtcatt ggcaatcact cgaatggtta agcttaaacc agaggtatag ccttcgcccc
    15961 aatccgcctc cacaactcgt tctgggttga gactttgtaa ttcaaacagt tgctcacaat
    16021 ctgcacggtg aatcgaaatc cctctgcctt gtgtgatgta acccacgatt tcatcacccg
    16081 gaatcggctg gcagcaacgg gcaatggaat gcattaagtt ccctacgccc tctacaatca
    16141 catagccttt gcttggcttc ggctgattgg tgtttttatt cacctgttta agtaccgctt
    16201 cgtcttcttg ttcggcggtc ggtttaatta attttgattg caagaagtgc attaactgat
    16261 gaagacgaat atcgccaccg ccaataccgg catagagatc atcaaactgt tttaagttat
    16321 agcgaggcag agcatattct tcaatttgct tgagcgtaaa accgaatttt tccatttcgg
    16381 cttcaagggc ctctttgccg attggaatat ttttctctcg gtctaatttt ttaaaccacg
    16441 caataatttt tgagcgagct ttgcctgtat tcacaaaacc ggtattcgga ttgagccaat
    16501 ctcggcttgg gttcggctct ttttgggtga taatttcaac ctgatcgccc atttgcagat
    16561 gataagtaaa cggcacaatc cgccctgcca cttttgctcc aatgcaacga tgcccgattt
    16621 cactatgaat tgcataagca aaatcaagtg gtgtagcttt ttgcggtaaa tcgatcacct
    16681 cgcctcttgg ggtaaagaca taaacacgat catcaaaaat ttgcgaacgc atttctgcca
    16741 ccatatcgcc tgaatcggca agatcgtttt gccactcaag caatttgcgt agccacacga
    16801 ttttttcttc gtagcccgaa cgccctgcgg ttgccccctc tttatatttc cagtgagcgg
    16861 ctacgcctag ctccgcatca tcgtgcattt gctgggtacg aatttgcact tcaatcgttt
    16921 tttcaccttc gcctaataca actgtatgaa tagactgata accgttaggt tttgggttag
    16981 caatataatc atcgaaatgt tccggcaaat gggtatattt ggtgtgaata atgcctaatg
    17041 ccgtgtagca atcttctaac gttggcacta ttacccgcac agcccgaata tcgaaaagct
    17101 gattaaatct caaccgtttt ttctgcattt tcttccaaat gctgtagata tgtttcgggc
    17161 gtccataaat ctgcacattc ttgatttcag gacttaaaca agcggtcaga tctgctacaa
    17221 aatttgcaat ataacgctca cgatccacac ggcgttcgcc caattcaaat ttagcaattt
    17281 gagtgtaaga gacagggtgt aaaatgcgga aacagtaatc ttccagctcc catttgagct
    17341 gcccgatacc caatcgattg gcaagcggtg cataaacgtg agaacattct ttagcggcga
    17401 gaacggtatc ttcttcggaa tggtggttac tatcacgcag gtaggcaatt cgttcggcaa
    17461 gtttaatcac cacacagcgg aaatcgtcca ccatcgccaa caacatgcga cggatattgt
    17521 cgatttgcag atccgacaca ttattggcac taagctggcg gatattctcc atttcgagta
    17581 cgcctttaac taagtttttg atgtcgttac tgaaatcttc ttttaattgc accaagtcga
    17641 tcacattgtg ttttaccaga ggaaaaagca ttgcggcaac taagctgtca tcgtccatat
    17701 tcaagccgtg caatacttca accatctcaa tgccatacca catcagacta tagtcggtat
    17761 ccagtttttc ctgtgcataa ctccacgcat tgtgaatctg ctcaaaagtc acaggagaca
    17821 tattcaggct tgcacaccaa ctcgacaact caaaattatt cggttcaagt tgatgggaat
    17881 aacgaattgc taccataagg cctccttgta aatttttgtg gaaattagac cgcttgtaca
    17941 gcttaaaatg gagttttatt atacgtggaa attcagaaaa aatttacccc taatcgaaaa
    18001 tttaatccaa gttatcttat cctctttact ccttaagagg tagcaacctt gtgataaatc
    18061 aaacctatca acacaatcat ttgcacgact tcacgctctt gattaaaata cttgcgtttt
    18121 tattttgatc tttatttttg tgggtagcaa tgacaatttt agctttagga atcaaccata
    18181 aaaccgcctc tgtgggttta agagagaaag tggcgtttgt agatgacaaa cgtaaactgg
    18241 ctcttgaaca aatccaaacg agcggattgg ctgaaagcgt ggtcattctc tctacctgca
    18301 accgcaccga gctctacttc caccagccta atatttctcc ccgtgaagag agcgaggaaa
    18361 atatccaatg gcgtgaacaa tgtttccgct ggtttgccca aattcatcaa cttgatgaaa
    18421 gcgagttgcg tgaatgttta tattttaaac aaaatttaga agccgctaac cacttaatga
    18481 aagtggcaag cggattagat tcactaattt taggcgaacc acaaatttta gggcaggtta
    18541 aacaagccta tcaatatagc gaagatttct accaacatca gcaaaaagcg atgtccacca
    18601 agctatcacg cttgttccaa cgcacctttg ccaccgcaaa acgagtacgt tccgaaaccg
    18661 aaatcggcag ccaagcggtg tcagttgctt atgcagcttg cggtttagcc cgtcaaattt
    18721 tcgataattt tggcaagtta cgctttttgc tggtaggggc aggcgaaacc attgaattag
    18781 tcgcccgcta tttaattcaa cacggggcga aaaatataat gttggcaaac cgcacccata
    18841 ttcgggcgga aatgttggcg gaaaaactaa acgctccaat gcaaattctg tcgttaagtg
    18901 ctttgcaact cggtttaaac caagctgatg tagttattag ctccaccggt agccctgata
    18961 ccctaatcag taaagaaatg gtggaaattg cgcaaaaaca acgccaattt gacccacttt
    19021 tgctgattga tattgccgtt cctcgtgata ttgacgaaaa agccggcgac ttagagggcg
    19081 tttacgctta tagtgttgat gatttacaaa atattatcca acgcaatatg gctcagcgtg
    19141 aagaagccgc caaacaagcc gctgaaatcg tcaaagagga aagcaaagca ttttttgaat
    19201 ggttaaaaca acagcagtct agtgatttaa tcaaacgcta tcgtcaagat gcggagcaaa
    19261 cccgccaaga attgttggag aaagccctac aagcaatcag tcaagggcaa gacagccaaa
    19321 aagtattaag tgagctaagc tacaaactca ccaaccagtt actacacgcc ccaacccaag
    19381 cgttacaagc aatggcaaaa agtggcaact ccaccggctt acaaagtttt tcaagagcat
    19441 tacggctaga agaatgatgc tcagcacatt cttttaggca tatttgcaaa aaattgaaca
    19501 tttttaaccg cttgcggacg cacgccgtgc gtccctcccc gtgttcccga tcttcttcta
    19561 atttcaactt ccccaaattt ccgctataat aagccaattt ttgcaactat tttgcaaata
    19621 accggatata gaggatacaa aatgactcct gttgttgccc tagtgggcag acctaatgtc
    19681 ggcaaatcga ctttatttaa ccgtttaacc cgtactcgag atgccttagt agcagatttc
    19741 cccggcttaa cccgagaccg taaatatggt cacgctaata ttgccggcta cgatttcatt
    19801 gtaatcgaca ccggtggtat tgatggtaca gaggaaggcg tggaagaaaa aatggcggaa
    19861 caatctttat tggcgattga agaagccgat gtggtgcttt tcttggttga tgcccgagcc
    19921 ggattattac ctgccgatgt cggcattgct caatatttac gccaacgtga aaaaaccacg
    19981 gtggtggttg ccaataaaac cgatggtatt gatgccgact ctcactgtgc cgaattctat
    20041 caattaggct taggcgaagt agaacaaatt gctgcagcac aagggcgtgg ggttacgcag
    20101 cttatcgagc aagtgttagc tcctttaggc gaacagctaa atgccgagca atttaaccaa
    20161 gaacaagcgg gcgaaaatgc taaaaatgtt gcaaatgaag aaacagacga atgggatacc
    20221 gaattcgact ttgagaacga agaagatgcg gcattattag atgaagcctt ggcagaagaa
    20281 gcagaagagt cgattgaaga taaaaatatc aaaattgcga ttgtcggtcg tccgaatgtt
    20341 ggtaaatcaa cactgaccaa ccgcatttta ggcgaagagc gtgtggtagt ttatgatatg
    20401 ccaggaacaa cccgtgattc tatttatatt ccaatggagc gtgacggtca gcaatatacc
    20461 atcattgata ccgccggtgt gcgtaaacgt ggcaaagtga atttagcggt tgagaaattc
    20521 tcggtaatta aaaccttgca agccattcaa gatgcaaacg tggtgctatt aactattgag
    20581 gcccgagaag gtatttccga tcaggattta tcactactcg gctttattct aaatgctggt
    20641 cgttcattgg tgattgtggt aaacaaatgg gacggcttgt cgcaagatat taaagatcaa
    20701 gtgaaatcag agttagatcg ccgtttagat tttattgatt ttgccagagt gcattttatc
    20761 tcggcattgc acggctcagg cgtggggaat ttgtttgatt cagtaaaaga agcctacgct
    20821 tgtgcaacgc aaaaaacctc gacctcaatg ctgactcgca ttttgcgtat ggctgctgat
    20881 gaacaccaac caccattggt taatggtcgc cgagtgaaat taaaatatgc tcacccgggt
    20941 ggctacaacc caccaattat tgtgattcac ggcaatcagg ttgaaaaatt agcggattct
    21001 tacaaacgtt atttaagtaa ttatttccgt aaaagtttaa aaattatcgg ctcgccaatt
    21061 cggattttat tccaagaagg caataatcct tttgccggta agaaaaacaa actgacacca
    21121 agccaattac gcaaacgtaa a
//
LOCUS       DANLRW010000036        20894 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.036, whole genome shotgun sequence.
ACCESSION   DANLRW010000036 DANLRW010000000
VERSION     DANLRW010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20894
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.036"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(65..1414)
                     /locus_tag="PXA71_001115"
     CDS             complement(65..1414)
                     /locus_tag="PXA71_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL5105237.1"
                     /translation="MLLFIMFAAIILLLVLIMKFKVHAFVALIIVSLLTALAAGIPVD
                     KILPTLLNGFGSTLASVALLVGLGAMIGRLLEITGGAKVLADTLINKFGKERAPFALG
                     VASLLFGFPIFFDAGLVVMLPIIFSVAKQFGGSVLRYAFPSAGAFAVMHAFLPPHPGP
                     VASGDLLGVNMGLLVLVGLVCAIPTWYIGTYLFSQFISKRIHVDLPKAFLNGLSANEM
                     AVQNPPSFGKVLTVLVLPIILILFDTGLNTLSVAKVIDGSEMWVQSLRLIGKTPVALL
                     ITLIVAIMLLRDNRSFDQIEKICNNALGPICSIVLVTGAGGMFGGVLRASGIGDVLSE
                     MMKDTGMPIVVAAFIIATVFRVAQGSATVALTTTAALIAPTVAAATDLSQFDLCFIVI
                     AIASGATVLSHVNDSGFWLMSRFLEMDEKTTLKTWTMLETAIGLTGFACALIGSWLL"
     gene            1601..2116
                     /locus_tag="PXA71_001116"
     CDS             1601..2116
                     /locus_tag="PXA71_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HDL5105238.1"
                     /translation="MANGKAFILMGVSSTGKTSVGTAVAQRLGIKLIDGDDLHPRANI
                     LKMASGTPLNDADRTPWLERINDAVFSFEQKSEKGIIVCSALKKKYRDQIRQGNADVT
                     FLFLHGSFELVLARMQQRKGHFMKPEMLQSQFNTLEIPQADEPDVIFIDIDGSFDEVV
                     ERCVKAVEPLL"
     gene            complement(2170..3169)
                     /gene="gntR"
                     /locus_tag="PXA71_001117"
                     /pseudo
     CDS             complement(2170..3169)
                     /gene="gntR"
                     /locus_tag="PXA71_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674159.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
     gene            complement(3262..4422)
                     /locus_tag="PXA71_001118"
     CDS             complement(3262..4422)
                     /locus_tag="PXA71_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
                     /protein_id="HDL5105239.1"
                     /translation="MIEQSYKIALLFNANKIYDRGVMQGIGQFIQASQCTWDIFVEDD
                     FVYHKNSIESLSIDGIIADFDDLETVELLKDIDVPIVAVGGSYQNPDYYPDLPYVATD
                     NYALVEAAFLHLKQKGINQFAFYGYPAETEKHWAIERKNAFIQLMEKYEHHPNCYIGD
                     QFHSDNWVELQAKLGEWLQTLPAHTGIIAVTDARARHLLQTCEHLKIAVPEQLCVIGI
                     DNEELIQYLSRVSLSSVTQGTSQIGYHAAKLLYRKLNNLPVSTKPILIPPVKVEERRS
                     TDYRSLQDPMVIQAMHFIRHRACQGIKVEQVLDHLKISRSNLEQRFKQEMNKTIHQVI
                     HEEKLARATYMLKFTEISTQEIANVCGYPSLQYFYAVFKKEFGKTPKEFRQE"
     gene            complement(4545..4931)
                     /gene="rplQ"
                     /locus_tag="PXA71_001119"
     CDS             complement(4545..4931)
                     /gene="rplQ"
                     /locus_tag="PXA71_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDL5105240.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMASALVEHEIIKTTLPKAKEL
                     RRVVEPLITLAKADSVANRRLAFARTRNVDTVAKLFNELGPRFAQRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRPEVATEAAAE"
     gene            complement(4967..5956)
                     /gene="rpoA"
                     /locus_tag="PXA71_001120"
     CDS             complement(4967..5956)
                     /gene="rpoA"
                     /locus_tag="PXA71_001120"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDL5105241.1"
                     /translation="MQGSVTEFLKPHLVNIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSSKEGVQEDILEVLLNLKGLAVKVQNKDDIILTL
                     NKSGIGPVTAADITHDGDVEIVNPDHVICHLTDKNASINMRIRVQRGRGYVPASARLH
                     TQNDDRPIGRLLVDARFSPVDRIAYNVEAARVEQRTDLDKLVIEMETNGTLDPEEAIR
                     RAATILAEQLAAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAETIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAED"
     gene            complement(5987..6613)
                     /gene="rpsD"
                     /locus_tag="PXA71_001121"
     CDS             complement(5987..6613)
                     /gene="rpsD"
                     /locus_tag="PXA71_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDL5105242.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIESKCRNRLDVAPGQHG
                     ARKPRLSDYGSQLREKQKVRRIYGILERQFRNYYTEANRLKGNTGENLLVLLEGRLDN
                     VVYRMGFAATRAEARQLVSHKSIVVNGRVVNIPSFQVSVDDVVAVREKSKKQARIKAS
                     LELATQREKPTWLEVDATKMEGVFKRRPERSDLSADINEHLIVELYSK"
     gene            complement(6642..7031)
                     /gene="rpsK"
                     /locus_tag="PXA71_001122"
     CDS             complement(6642..7031)
                     /gene="rpsK"
                     /locus_tag="PXA71_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDL5105243.1"
                     /translation="MAKTPVRARKRVKKQIADGVAHIHASFNNTIVTITDRQGNALAW
                     ATAGGSGFRGSRKSTPFAAQVAAERCAEMVKEFGLKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            complement(7048..7404)
                     /gene="rpsM"
                     /locus_tag="PXA71_001123"
     CDS             complement(7048..7404)
                     /gene="rpsM"
                     /locus_tag="PXA71_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019935869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDL5105244.1"
                     /translation="MARIAGINIPDQKHTVIALTAIYGIGKTRAKAICAATGIAEDVK
                     IRELSEEQIEKLREEVGKFTVEGDLRREVTLSIKRLLDLGCYRGLRHRRSLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            complement(7542..7655)
                     /gene="rpmJ"
                     /locus_tag="PXA71_001124"
     CDS             complement(7542..7655)
                     /gene="rpmJ"
                     /locus_tag="PXA71_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006232360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDL5105245.1"
                     /translation="MKVRASVKRMCRNCKVIKREGVVRVICSDPKHKQRQG"
     gene            complement(7680..8999)
                     /gene="secY"
                     /locus_tag="PXA71_001125"
     CDS             complement(7680..8999)
                     /gene="secY"
                     /locus_tag="PXA71_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDL5105246.1"
                     /translation="MAKQPGYQGSTQKGTGELKSRLLFVLGALIVFRIGSFIPVPGID
                     ASVLSELIRQQQGTIIDMFNMFSGGALSRASIFALGIMPYISASIIIQLLTAIHPPLA
                     ELKKEGEAGRRKISKYTRYGTLLLAFIQSIGISLALPNMVHGLVPNPSILFYVTSVVS
                     LVTGTMFLMWLGEQITERGIGNGISLIIFTGIVADLPATIGQTIEQARQGELSFIVLL
                     LVAIIAFAVTYFVVFVERGQRRIVVNYASRQQGRMMAPARTSHLPLKVNMAGVIPAIF
                     ASSIILFPASITQWFGQSEGFEWLFNLSQLLQPGQPLYVVLFTMAVIFFAFFYTGMQY
                     NPRDTADNLKKSGAFVPGYRPGEQTSRYIDKVMTRLTLIGALYIAFVCLVPYIITSLW
                     KVPFQLGGTSLLIVVVVIMDFIAQVQSHLMSQQYDSVLKKANLKGLN"
     gene            complement(9002..9436)
                     /gene="rplO"
                     /locus_tag="PXA71_001126"
     CDS             complement(9002..9436)
                     /gene="rplO"
                     /locus_tag="PXA71_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDL5105247.1"
                     /translation="MRLNSLSPAEGAKHSAKRLGRGIGSGLGKTGGRGHKGQKSRTGG
                     GVRRGFEGGQMPLYRRLPKFGFTSLKSFHVAEIRLNDLAKVDGNEVTLETLKAANIIT
                     KDILSAKVILAGKIERAVVVKGLRVTKGAKAAIEAAGGSIEE"
     gene            complement(9441..9617)
                     /gene="rpmD"
                     /locus_tag="PXA71_001127"
     CDS             complement(9441..9617)
                     /gene="rpmD"
                     /locus_tag="PXA71_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HDL5105248.1"
                     /translation="MAKIKVTQTRSSIARLPKHKATLKGLGLRHIRHTVELEDTPAVR
                     GMINQVSYMVKVEE"
     gene            complement(9624..10124)
                     /gene="rpsE"
                     /locus_tag="PXA71_001128"
     CDS             complement(9624..10124)
                     /gene="rpsE"
                     /locus_tag="PXA71_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDL5105249.1"
                     /translation="MSNIEKQAGELQEKLIAVNRVSKTVKGGRIMSFTALTVVGDGNG
                     RVGFGHGKAREVPAAIQKAMEKARRNMINVALNEGTLQHPVKGSHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVRNVLSKAYGSTNPINVVRATIDALENMKSPEMVAAKRGKT
                     VEEILG"
     gene            complement(10139..10492)
                     /gene="rplR"
                     /locus_tag="PXA71_001129"
     CDS             complement(10139..10492)
                     /gene="rplR"
                     /locus_tag="PXA71_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDL5105250.1"
                     /translation="MDKKVARIRRASRARHLMREQGATRLVVHRTPRHIYAQVIAPNG
                     SEVLAAASTVEKVIKEQVKYTGNKEAAAVVGKIVAERAIAKGIKAVAFDRSGFKYHGR
                     VQSLADAAREAGLQF"
     gene            complement(10507..11040)
                     /gene="rplF"
                     /locus_tag="PXA71_001130"
     CDS             complement(10507..11040)
                     /gene="rplF"
                     /locus_tag="PXA71_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDL5105251.1"
                     /translation="MSRVAKAPVNIPAGVEVKLNGQLLTVKGKNGELSREIHNAVEVK
                     QEADALTFAPREGIANADAQAGTARALVNNMVIGVTEGFTKKLQLVGVGYRAQMKGNA
                     VALSLGFSHPVEHTLPAGVTGECPSQTEIILKSADKQLIGQVAADIRAYRKPEPYKGK
                     GVRYSDEVVRTKEAKKK"
     gene            complement(11057..11449)
                     /gene="rpsH"
                     /locus_tag="PXA71_001131"
     CDS             complement(11057..11449)
                     /gene="rpsH"
                     /locus_tag="PXA71_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDL5105252.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKVAISMPSSKLKVAIANVLAEEG
                     YIESVKVVEGVKPELEITLKYFQNKPVVESIQRVSRPGLRIYKRKDELPKVMGGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            complement(11486..11791)
                     /gene="rpsN"
                     /locus_tag="PXA71_001132"
     CDS             complement(11486..11791)
                     /gene="rpsN"
                     /locus_tag="PXA71_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HDL5105253.1"
                     /translation="MAKQSMIARDVKRAKLADKFYAKREELKKIISDVNASDEDRWAA
                     VLKLQTLPRDSSPIRQRNRCRQTGRPHGVLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            complement(11803..12342)
                     /gene="rplE"
                     /locus_tag="PXA71_001133"
     CDS             complement(11803..12342)
                     /gene="rplE"
                     /locus_tag="PXA71_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDL5105254.1"
                     /translation="MAKLHDYYRDTVVNELKAKFNYSSVMQVPRIEKITLNMGVGEAL
                     TDKKLLDNAVADLAAISGQKPLVTKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLNAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTSA
                     KTDEEGQALLAAFNFPFRK"
     gene            complement(12360..12671)
                     /gene="rplX"
                     /locus_tag="PXA71_001134"
     CDS             complement(12360..12671)
                     /gene="rplX"
                     /locus_tag="PXA71_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDL5105255.1"
                     /translation="MAAKIRQNDEVIVLTGKDKGKRGKVTKVLPNGKVFVEGINIITK
                     HEKPVPALGKAGGLVKKEAAIDVSNVAIFNPETNKADRVGFRFEDGKKVRFFKSNEKT
                     I"
     gene            complement(12682..13053)
                     /gene="rplN"
                     /locus_tag="PXA71_001135"
     CDS             complement(12682..13053)
                     /gene="rplN"
                     /locus_tag="PXA71_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDL5105256.1"
                     /translation="MIQEQTMLDVADNSGARSVMCIKVLGGSHRRYAAIGDIIKVTVK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGAVIRFDGNACVILNNNTEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            complement(13276..15111)
                     /gene="glmS"
                     /locus_tag="PXA71_001136"
     CDS             complement(13276..15111)
                     /gene="glmS"
                     /locus_tag="PXA71_001136"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDL5105257.1"
                     /translation="MCGIVGAVAQRDIAEILVDGLHRLEYRGYDSAGVAVLNADDKTM
                     QIVRRVGKVKALDEALDTKPLLGGTGIAHTRWATHGEPSETNAHPHRSGKIAVVHNGI
                     IENYEELKIVLQERGYVFQSQTDTEVIAHLVEWELRSASSLLEAVQKTVVQLRGAYGT
                     VVLNEEEPEHLIVARSGSPLVIGYGVGENFLASDPLALLSVTRRFAYLEEGDVAEITR
                     RTVDIYDREGNKAEREIHEGNFEADAADKGQYRHYMQKEIFEQPVAIMNTLDGRIKDG
                     KVDISAIAPNAAEILSKVEHVQIVACGTSYNAGMVSRYWFESIAGVSCDVEIASEFRY
                     RKFVTRPNSLLITLSQSGETADTLAALRLAKESGYMAAMTVCNVASSSLVRESDFAFL
                     TKAGVEIGVASTKAFTTQLTCLLLLNVAIGRLQGRMSEEQEHHIVQSLQRLPAQIESA
                     LVFDKQIEKLSEDFADKHHTLFLGRGEYYPVAMESALKLKEISYIHAEAYAAGELKHG
                     PLALIDSDMPVVVVAPENDLLEKVKSNIEEVRARGGQLYVFADHDAGFEEAEGFKTIV
                     MPKVDEVTAPIFYTVPLQLLSYHIALIKGTDVDQPRNLAKAVTVE"
     gene            complement(15159..15920)
                     /locus_tag="PXA71_001137"
     CDS             complement(15159..15920)
                     /locus_tag="PXA71_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR family transcriptional regulator"
                     /protein_id="HDL5105258.1"
                     /translation="MSKRNTQQRRHLIVQMVQEKNEVSVDELAHFFETSEVTIRKDLT
                     ALEESGFLLRKYGGAVKIPSEMMEEAFIEQLSIQKKMIAQAARDCIRDHNRIIIDSGS
                     TTGALVKALNQTGLVVMTNSLNLATELTSLECEPTVLMTGGTWDSRSESFQGKVAEQV
                     LRSYDFDQLFIGADGLDLARGTTTFNELVGLSQVMAEVSREVIVLIESQKIGRKMPNI
                     ELKWQNITKIITDSQLSFETKEQIEKMGVEVVIAK"
     gene            complement(16077..16277)
                     /locus_tag="PXA71_001138"
     CDS             complement(16077..16277)
                     /locus_tag="PXA71_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HDL5105259.1"
                     /translation="MKSILKVVGAMVLMVAVSGCNNMTKTQRNTAIGAAIGGVAGHAI
                     GESTGATLGGAALGGVIGSQIK"
     gene            16502..17536
                     /locus_tag="PXA71_001139"
     CDS             16502..17536
                     /locus_tag="PXA71_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5105260.1"
                     /translation="MKLKKLSLALSTLLLGSAFANSALAEGRLTVYCSATNELCEQEV
                     QAFGKKYNVKVAFVRNGSGSTLAKIEAEKNNPQADVWYGGTLDPHSQAAEMGLLEPYK
                     SPNLEQIIEKFRDPAKLKGNYSSAVYMGILGYGVNLDRIKKLGIEKVPSTWEDLLDPR
                     LAGEIQIADPQSSGTAYTAIATFVQLLGEEKAFDYFRKLHKNISQYTKSGITPARNTA
                     RGETAIGIGFLHDYAIEKKNGANIEMTAPTDGTGYELGGVSILKGARNLDNAKLFVDW
                     SLSKEAQELSWQKGNAFQVLTNTTAESSPYALDPKNLNLINYDFEKYGSSEERKRLID
                     KWVNEVKLAK"
     gene            17604..19640
                     /locus_tag="PXA71_001140"
     CDS             17604..19640
                     /locus_tag="PXA71_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016534092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5105261.1"
                     /translation="MQNFSFSRPLVWVLIGLLGFLLLPSKALDYGLFDSTSDELLAAM
                     GWASLNITWAWFLPLLVFLLPNSTACKTRAKLELVGLGVLFAFIFLSAIVLKISLGYA
                     VLPLIIAIMGLATPNLATLKVMQGDRFIIGSLLSIILLIFFFIVYPTIAIFVSMFYNG
                     SEFVPSQVLTILQQPYVVRVIGNSLSVAGTVGVLSTLFGLAFALYTTRIAKRSAFIGR
                     IFSILPIVTPPFVVGLGVTLMLGRSGYVTEFLVDYFGFANNWLYGFTGIVIAHTLALT
                     PMSFMILEGALKSIHPSVEEAAYTLRSNRYQAFFNIIFPLLKPALANSFLVVAIQSLA
                     DFSTPLVLGGSFDVIATQIYFYIAGSQLDYASASTLGAILLVFSLAIFVIQYLWIGNR
                     SYVTVSGKSYRGDVQDLPSGMKWLIICTLLFWGTFNLVLYGSIFYGSFTVNWGVDYTL
                     TLDNYIKLFGQGFSDGGFPSLIQTVIFAAAAAPITALFGLLIAYVTVRRDFKGKKTLE
                     FLTLLCFAVPGTVAGVSYILAFNDAPIYLTGTGMIIILSMVMRNMPVGMRAAIAGLGQ
                     LDKSLDEASLSLKAGSFKTMLFVVLPLLKPALLSALVTSFVRAMTTVSAIVFLVTADT
                     RVATSYILNRVEDGEYGIAIAYGSILIVVMMAIILIFDWIVGDTRIARSKAKKM"
     gene            19738..20787
                     /gene="fbpC"
                     /locus_tag="PXA71_001141"
     CDS             19738..20787
                     /gene="fbpC"
                     /locus_tag="PXA71_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric ABC transporter ATP-binding protein"
                     /protein_id="HDL5105262.1"
                     /translation="MNNDFLVLKNVTKSFGKVTVIDNLNLSIPQGKMVTLLGPSGCGK
                     TTVLRLVAGLENPTSGQIFIDGEDVTQSSIQHRDICIVFQSYALFPHMSIGDNVGYGL
                     KMQGVPKEERLQRVKEALELVDLGGFEDRFVDQISGGQQQRVALARALILKPKVLLFD
                     EPLSNLDANLRRSMREKIRELQQRLNITSLYVTHDQSEAFAVSDEVIVMNKGKIMQKA
                     PAKELYLRPNSLFLANFMGESSIFEGTIAGNQININGYQFTLANAEQFELPDGEYLVG
                     IRPEAIHLAEQGNISQLCKIKNAVYMGNHWEIIAEWEGKDLLVNTKPENFYPHIKQAY
                     VHFIEQGVFLLKKEL"
BASE COUNT         5884 a         4677 c         4154 g         6179 t
ORIGIN      
        1 cggtcgattc tctgccaaat tttgcaaatt ttagaagaaa acagaccgct tgtcagggtt
       61 ggaattagag taaccagctg ccaatcaatg cacaggcaaa accggttaaa ccgatggcag
      121 tttcaagcat tgtccacgtt ttgagggtag ttttttcgtc catttcaagg aaacggctca
      181 tcagccagaa accggagtca ttgacgtggg aaagcaccgt cgcaccggag gcgatagcaa
      241 tcacgataaa acagaggtcg aactggctta aatcagtcgc tgccgccaca gttggcgcaa
      301 tcaacgctgc tgtggtggtt aaagcaacgg ttgccgagcc ttgtgcgaca cggaataccg
      361 tagcaataat aaaggcggca accacaatcg gcattccggt gtctttcatc atttccgata
      421 atacatcgcc aatcccgctg gcacgcaaca cgccaccaaa cattccgcct gcaccggtta
      481 ctaagacaat cgagcagatt gggccaaggg cattgttaca gattttttcg atttggtcga
      541 aactgcgatt atcccgcaac agcataatcg ccacaattaa ggtaatcagt aaagcaacag
      601 gggttttgcc gattaagcga aggctctgca cccacatttc actgccatca atcactttag
      661 caacggagag ggtattcaag ccggtatcaa acaaaatcag gataatcggc agcaccaaca
      721 ccgtgagtac cttgccaaaa cttggcgggt tttgtactgc catttcgttt gccgataagc
      781 cgtttaaaaa cgctttcggc aaatcaacgt gaatgcgttt gctgataaat tggctgaaca
      841 ggtaagtgcc gatataccac gttgggattg cacaaaccaa gcccaccaag actaacagcc
      901 ccatattcac accaagcaga tcgccggagg caaccgggcc ggggtgcgga ggtagaaagg
      961 cgtgcattac cgcaaacgca ccggcagacg gaaacgcata gcgcaacacc gaaccgccga
     1021 actgttttgc cacgctaaaa ataatcggta acatcaccac caagccggca tcaaagaaaa
     1081 tcgggaagcc gaataacagc gaggcaacgc ccaacgcaaa aggcgcacgt tctttgccga
     1141 atttattgat aagcgtatcc gcaagcactt tcgccccgcc ggtgatttca agcaagcgac
     1201 caatcatcgc cccaagcccc accagtaacg ccactgatgc cagcgtacta ccaaaaccat
     1261 tcaacaatgt tggcaggatt ttatctaccg gaataccggc agctaatgca gtgagcaggc
     1321 tcacaataat caatgccaca aaagcgtgga ctttaaattt cataatcagc accagcaata
     1381 aaatgatggc agcaaacata atgaacagta acataggatc tcctaaggtt gaattgttat
     1441 cggtaacata accaaaaagc agtttagagt aaacggttgc agggctttta ttttaaaaat
     1501 gtgatctact tcaagttttc tggaaatagc agatgatttt tcagcataac ctgttacatt
     1561 aacggctaag ttaacgttac cagtaacaca aggaaattca atggcaaacg gcaaagcatt
     1621 tattttgatg ggcgtgtcca gcaccggcaa aaccagcgtg ggaacggcag tcgcacagcg
     1681 gttgggaata aaattgattg atggggacga cttacaccct cgtgccaata tactgaaaat
     1741 ggcaagtggc acgccactca atgatgcaga tcgcacaccg tggttggagc ggattaacga
     1801 tgcagtgttc agttttgaac aaaaaagcga aaaagggatt atcgtctgct cagcattgaa
     1861 gaaaaagtac cgagaccaga tccgacaagg caatgccgat gtgacttttc tattcttgca
     1921 cggctcgttt gaactggtgc tggctcgaat gcaacaacgc aaagggcatt ttatgaaacc
     1981 ggaaatgctt caaagccaat ttaatacgct ggaaattccg caggcagacg aaccagatgt
     2041 gatatttatt gatattgacg gcagttttga cgaggtggtg gagcgttgcg tgaaagcagt
     2101 tgagccgttg ctttaatcac aagtggtgga ttttgcggat ttttttgcaa atttaaccgc
     2161 ttgtccgggc tacacacttt cccccaaatg gatctgatag cccaagttaa ttatggagct
     2221 ttgttgtggt acgccgtgaa tacggttgag cagctcttgg gcggcaactc tgcctatttc
     2281 aaggcgaggt gtgatgacgc tggcaagctg tggcgtgagg gattgcccga catcgtgtcc
     2341 gtgaaagccg gcgattttaa tctgctgcgg cacatgaatg cctaaccgtt ggcactcaaa
     2401 taatgccccg attgccaaat cgtcattggt gcaaaaaatg ccgtctagct gcggaatgtg
     2461 ttgcagggct tgttttagct ggcttgcgcc aagcgtgaaa gaagaatgct ctgcagtagt
     2521 aatgctgtgt gggcttaagc cgtgtttgag cattgcctgt tcgtagccct gcattttcag
     2581 ctgagagcgt ttatccattc tcgccccgaa atacaccacc tgtcggcagc ctcgatgaat
     2641 cattgtctcg accattgctt gagccgcaga aatattgtca atatccgacc gcttgttgaa
     2701 tgccacattc gccgctttcc attatctcaa tcaccggaat attcgccact tccagcattt
     2761 tcaaggtgcg gggcgagtgg tgattttccg ataagataat gccgtcaata ttgtacgaaa
     2821 gcagcgactc aatccgctgc tcttcctttt gttcgctgta accatagtgg gcgagcatgg
     2881 tttgatagct ggcttggtcg gtaatctgct caatgccttt aatcacatcg gcaaacactt
     2941 gattggtaag cgaaggaacc agcacgccaa ttgcacggct tttggcattc gagagaatat
     3001 ccggtgcacg gtttgggata tagccaaaca gctcaatcgc ttgtgcaatc cgctcgccgg
     3061 tctccttggc aacggtgttt ggatcccgca aaaagcgact gaccgtcatt ttggtaatgc
     3121 cgagatgggt agcgatgtct tgcaaagttg ggcgtttcgg ttttctcatt ggaatagata
     3181 acgaaaaaat ttaatttcgc tgattataac tgaagataag gcaataattg caaaatattc
     3241 ggtgaaattg accgcttgtt actactcttg cctgaactct ttcggggttt taccaaactc
     3301 ttttttaaac acggcataga aatattgtaa agagggataa ccgcacacat tggcaatttc
     3361 ttgggtcgaa atctcggtaa atttgagcat atatgttgct cttgctaatt tttcctcgtg
     3421 aatcacctgg tgaattgtct tattcatttc ctgcttaaaa cgctgttcaa ggttagagcg
     3481 ggaaatttta agatgatcca gtacttgctc tactttaatg ccttggcaag ctcggtgacg
     3541 aataaagtgc atagcttgga ttaccattgg gtcttgcaaa gaacgataat cggtcgaacg
     3601 gcgttcttcc acttttaccg gcgggattaa aatcggcttg gttgaaaccg gtagattatt
     3661 taattttcga tataataact tcgcagcgtg atagccgatt tgtgatgttc cttgtgtgac
     3721 tgaagaaaga gaaacccgag agaggtattg aatcaactct tcgttatcaa tgccgatcac
     3781 gcaaagttgt tcaggtacag cgatttttaa atgctcacag gtttgaagca ggtgtcttgc
     3841 ccttgcgtca gtaacggcaa taatgcccgt gtgggctggt aaggtttgta accactcgcc
     3901 taatttggct tgtaattcaa cccaattatc tgaatgaaat tgatcaccaa tataacaatt
     3961 tgggtgatgt tcatattttt ccatcaactg aataaaggca ttttttcgct ctatcgccca
     4021 atgtttttcc gtttctgcag gatagccgta aaacgcaaat tggttgattc ctttttgttt
     4081 taggtgtaaa aatgctgcct caactaaggc gtaattgtcg gtagcaacat aaggaaggtc
     4141 agggtaatag tcagggtttt ggtaagaacc gcctactgct acaatgggga cgtcaatatc
     4201 tttaagtagc tcaactgttt ccaaatcgtc aaaatcggca ataatgccgt caatcgacag
     4261 gctttcgata ctatttttat gatagacaaa atcatcttcc acaaaaatat cccaagtaca
     4321 ttgtgatgct tgaataaact gcccaatgcc ctgcattact cctctgtcat aaattttgtt
     4381 agcattaaaa agtaaggcaa ttttataaga ttgttctatc attacttcct ccagtaccca
     4441 ctttcaaaag taactataaa ataaaattat tttttgatca aaacgaataa aagaataaaa
     4501 ccccggtatt tctaccaggg ttttaagctc aattttgatt aagattattc cgcagctgct
     4561 tcagttgcaa cttctgggcg atccactaac tcaatgtaag ccattggagc attatcacct
     4621 gcacggaaac cacattttaa aatgcgagtg taaccacccg cacgttgtgc aaaacgtgga
     4681 cctaattcat tgaataattt agcaactgta tcaacgttgc gtgtacgggc aaaagctaaa
     4741 cggcgatttg caacgctgtc tgctttagct aaagtaatta acggctcaac tacacggcgt
     4801 aactctttcg cttttggtaa agttgtcttg atgatttcgt gttcaacaag cgcacttgcc
     4861 atattacgga acatcgcttg gcgatggctg ctgttacggt ttaattgacg tccactctta
     4921 cgatggcgca taacctattc cttcttagaa aatctatacc gaaaaactag tcttctgcaa
     4981 tacttgcagg tggccagttt tcaaggcgca taccgagtga taaaccacga gaagcaagaa
     5041 catccttaat ctctgtaaga gattttttac ccaagttcgg ggttttaaga agttcaactt
     5101 ctgtacgttg tactaaatca ccgatatagt gaattgtctc tgctttcaaa cagttagcag
     5161 aacgaactgt cagctctagg tcatctactg gacgaagaag aataggatca aattccggtt
     5221 tttcttcttt cacttcaggt tgacgaacat cacgcaaatc aacgaatgca gcaagttgtt
     5281 ctgctaaaat cgttgcagca cgacggatag cttcttcagg atctaacgtt ccgttagttt
     5341 ccatctcaat aacaagttta tctaagtctg tacgttgttc aacacgagca gcttcgacat
     5401 tgtaagcaat gcgatctaca ggtgaaaaac gtgcatctac taataaacga ccgatagggc
     5461 ggtcatcgtt ttgagtatga agacgtgctg atgcaggaac ataacctcga ccacgttgaa
     5521 cacgaatgcg catattaatt gatgcattct tatctgttaa atgacagatt acgtgatcag
     5581 gattcacaat ttctacatcg ccatcgtgtg tgatgtcggc tgcagttaca gggccaattc
     5641 cagatttatt tagtgtcaaa ataatatcat ctttattttg cacttttacc gctagacctt
     5701 taaggtttaa taatacctca agaatatctt cctgaacgcc ttctttgctg ctgtactcat
     5761 gcagtacacc atcaatttca acttcagtaa ctgcacaacc cggcatagat gaaagtaaaa
     5821 tgcggcgaag tgcgttacct aatgtatggc caaaaccacg ctctaacggc tctaatgtca
     5881 ctttagcatg agttgaacta acttgttcaa tatttactaa gtgcggcttt aaaaattctg
     5941 tcacagaacc ctgcattttt tcctctcttt gcggttaagc taactattat ttagagtaaa
     6001 gctcaacgat cagatgttca ttaatatctg ctgatagatc agaacgctct ggacgacgtt
     6061 taaatacgcc ttccatttta gttgcatcaa cttctaacca agttggtttt tcacgttgag
     6121 ttgctaattc taatgatgct ttaatacgtg cttgtttttt cgatttttca cgaacagcaa
     6181 caacatcatc aacagaaact tggaatgaag gaatgtttac tacacgaccg tttactacga
     6241 ttgatttatg gctaacaagc tgacgtgctt ctgcacgtgt tgctgcaaaa cccatacgat
     6301 aaactacgtt atctaaacga ccttccaata atactagtaa gttttcaccg gtattacctt
     6361 ttaagcggtt cgcttctgta taataattac ggaattgacg ctctaagata ccataaatac
     6421 ggcgaacttt ttgtttttca cgtaattgac taccatagtc agataaacgt ggcttgcgag
     6481 caccatgttg accaggcgct acatcaagtc tatttctaca ttttgattca atcgcacgaa
     6541 cgcctgattt taagaataaa tcagtacctt cacgacggct tagcttgagc ttaggaccca
     6601 aatatcttgc cattttcttt ctccaattct tttaacgtca attaaacacg acgttttttc
     6661 ggtggacgac aaccgttatg tggaatcgga gtcacatcag taatattcgt gatacggaaa
     6721 cctgctgcat ttaatgcacg gattgttgac tcacgacctg gacccggtcc tttaaccata
     6781 acttccaaat tctttaaacc aaactcttta accatttctg cacaacgctc tgcagcaact
     6841 tgagcagcga atggagtcga tttacgagaa ccacggaaac ctgaaccacc tgcagttgcc
     6901 caagctagag cattaccttg acggtcagta atagtaacga ttgtgttatt gaaagatgcg
     6961 tggatatgag ctacgccatc tgcaatctgt ttttttacgc gcttacgtgc gcgaactggt
     7021 gttttagcca ttatttatct actccgacta ttttttgatc ggtttgcgtg gacctttacg
     7081 ggtacgcgca ttagtcttag tacgttgacc acgtaccggt aaactacgac gatgacgtaa
     7141 accacggtag caacctaagt ctaaaagacg tttgatgctt aaagttactt cacgacgtaa
     7201 atccccttcg acagtaaatt taccaacttc ttcacgcagt ttttcaatct gctcttcaga
     7261 caattctctg atctttacat cttcagcaat acccgttgca gcacagatgg cttttgcacg
     7321 agttttaccg ataccgtaaa ttgcagttaa tgcgattaca gtgtgttttt gatcaggaat
     7381 gttaatgcct gcaatacggg ccactatgca ctcctattat ttaagtttat tgatatactg
     7441 atcttgaaaa gcccgtttca ggatactcaa acagtatatc aggacgaatg agctgagcag
     7501 tataactgct cagcgggttc tttgcaagaa atatgcgtaa attaaccttg acgttgtttg
     7561 tgtttaggat cgctacaaat tacacgaacc acaccttcac gtttgattac tttacaatta
     7621 cggcacattc tttttactga agcacgaact ttcattgctt atcctttatt aacggcctat
     7681 taatttagac cttttaagtt agctttcttc aacacagaat catattgttg agacattaaa
     7741 tgactctgaa cctgtgcgat gaaatccata ataacaacca ctacaatcaa taatgatgta
     7801 ccacctaatt ggaatggcac cttccataac gacgtaatga tgtaaggaac caaacaaaca
     7861 aaagcaatat ataacgcacc aattaaggtt aaacgtgtca ttactttatc gatataacga
     7921 gatgtttgtt cgcctggtcg gtaacctggt acaaacgcac ctgatttctt aagattatcc
     7981 gctgtatcac gaggattata ctgcattcct gtataaaaga aagcaaagaa aatcactgcc
     8041 attgtgaata atacaacata cagtggttga cctggctgta atagttgtga aaggttaaat
     8101 aaccactcaa atccttcgct ttgaccaaac cattgagtaa tgcttgccgg gaataaaata
     8161 atacttgaag caaaaattgc cggtattacc cctgccatat tcacttttaa tggtaagtga
     8221 gaagttcttg caggcgccat cattcgacct tgttggcgac ttgcatagtt tacaactatt
     8281 cttctttgtc cacgttcaac aaaaacaaca aaataagtta ctgcaaatgc aattattgca
     8341 actagtagta agacgataaa tgataactcg ccttgacggg cttgttctat tgtctgccct
     8401 atcgttgctg gaagatctgc aacaatacct gtaaaaataa tcaatgagat accgtttccg
     8461 ataccacgct cagtgatttg ttcgcctagc cacattagga acattgttcc tgtcactaag
     8521 cttactacag aggttacata gaataatata cttggattag gaactaatcc atgtaccata
     8581 ttcggtaggg ctagtgaaat accaatagat tgaataaatg ctaataacag tgtgccatag
     8641 cgtgtatatt tactgatttt ccgacgacct gcttcacctt ctttctttaa ttcagctaga
     8701 ggtgggtgaa tcgctgtcaa taattggata ataattgacg ctgaaatata aggcataata
     8761 cctagtgcaa atatagatgc acggcttaaa gcaccaccag agaacatatt aaacatatca
     8821 atgatggtgc cttgctgttg tcgaattaat tcggataata cagaagcatc aatgccagga
     8881 acaggtataa aagaaccgat acggaaaacg attaacgcac ctaaaacaaa caatagtctt
     8941 gatttaagct cgccagtccc tttttgtgta ctaccttggt accctggttg ctttgccatc
     9001 tttattcctc gatagaaccg ccagcagctt caatagcagc tttagcgcct ttagttacac
     9061 gtaagccttt aacaactact gctctttcaa ttttgcctgc taaaattact ttagcagata
     9121 aaatatcttt agtaatgatg tttgctgctt ttaatgtctc taaagttact tcgttgccat
     9181 ctactttagc taagtcgttt aaacgaattt cagccacatg gaatgatttt aatgaagtaa
     9241 aaccaaattt tggcaaacga cgatataaag gcatttgacc accctcgaaa ccacgacgaa
     9301 caccgccgcc tgtacgagat ttttgacctt tatgaccgcg cccaccagtt ttacctaaac
     9361 cagaaccaat accacgacct agacgttttg cactgtgctt agcaccttca gctggagaaa
     9421 gagaatttaa acgcattcta ttactcctct actttaacca tataagacac ttgattgatc
     9481 ataccacgca ctgctggtgt atcttcaagt tctacagtat gacgaatatg acgaagacct
     9541 aagcctttta acgttgcttt atgtttcggt aaacgagcga tagagctacg agtttgagtt
     9601 actttaattt ttgccatatc caattacccc aaaatttctt caactgtttt gccacgtttt
     9661 gcagcaacca tttcaggtga tttcatgttc tcaagtgcat cgattgttgc acgaacaacg
     9721 ttaattgggt tagttgaacc atacgcttta gaaagaacgt tacgaacacc cgcaacttct
     9781 aatactgcac gcattgcacc accagcgatg atacctgtac cttcacttgc tggttgcata
     9841 aatacgcgtg aacctgtatg tgaaccttta actggatgtt gtaatgtacc ttcatttaaa
     9901 gctacattaa tcatattgcg acgagctttt tccatcgctt tttggattgc tgctggaact
     9961 tcacgtgctt taccgtgacc aaaacctaca cgaccgttac catcgcccac tactgttaaa
    10021 gcagtgaaac tcataatacg accacctttt acggtttttg aaacacggtt aaccgcgatt
    10081 agcttttcct gcagttcacc agcttgtttt tcgatgtttg acatctcaaa ttcctctatt
    10141 agaactgtag accagcttca cgagcagcat ctgctaatga ttgcacacga ccgtggtatt
    10201 taaaaccaga acggtcaaaa gcaaccgctt taataccttt ggcaattgca cgctcagcaa
    10261 cgattttacc cactactgct gcggcttctt tattgccggt atatttaact tgctctttaa
    10321 ttactttttc aacagttgaa gctgctgcta gtacttctga gccattaggt gcaatcacct
    10381 gcgcatagat atggcgaggt gtgcgatgca caactaaacg tgttgcacct tgctctctca
    10441 ttaaatgacg tgcacggctt gcacgacgga tacgagctac tttcttatcc atagtgttac
    10501 cttactttac tttttcttcg cttcttttgt acgcactact tcatcagagt aacgtacacc
    10561 tttaccttta taaggttcag gtttgcgata tgcacgaata tctgctgcca cttgaccaat
    10621 taactgtttg tcagcacttt tcagaataat ttctgtttgt gatggacatt caccagttac
    10681 gcctgctggc aacgtgtgtt ctactgggtg agagaaacct aaacttaaag caacagcatt
    10741 gcctttcatt tgtgctctat aaccaacacc cactaattgc aatttcttag taaagccttc
    10801 agtaaccccg attaccatat tatttactag tgcacgagca gtacctgctt gagcatctgc
    10861 attagcgata ccttcacgtg gagcgaaagt taatgcatct gcttcttgtt ttacttcaac
    10921 tgcattgtga atttcacgag ataactcgcc gtttttacct ttaactgtta atagctgacc
    10981 gttaagtttt acctcaacac cggcaggaat attaacaggt gcttttgcaa cacgagacat
    11041 ttttcctacc tctctattat gctacgtaac agataatttc accgccgagg cccgcttgac
    11101 gcgcagcacg gtcggtcatt acacctttag atgtagaaac aactgcgata cctaaaccac
    11161 ccattacttt tggtaattcg tctttgcgtt tataaatacg cagacccgga cggctcacac
    11221 gttggatact ttctacaacc ggtttgtttt ggaaatattt taaagtaatt tccagttcag
    11281 gtttaacacc ttcaacaact ttaacgcttt cgatataacc ttcttcagct aaaacatttg
    11341 caatagcaac ttttaactta gatgaaggca tactgattgc aactttgttc gcagcttgac
    11401 cgttacgaat acgggtcagc atatctgcga ttggatcttg catgctcatg tatttactcc
    11461 catgattcca aattaaaaga ggttattacc agcttgcctt cttaagaccc ggaatttcac
    11521 cgcgcatagc agcttcacga accttaatac ggcttaaacc aaacttacga agtacgccat
    11581 gtggacgacc agtttggcgg caacgattac gctgacggat tgggctagaa tcacgaggaa
    11641 gtgtttgtaa ttttaacact gctgcccaac ggtcttcatc agatgcattc acatcagaga
    11701 tgattttctt taattcttca cgttttgcgt agaatttatc agctaattta gcacgtttta
    11761 catcgcgtgc gatcattgat tgttttgcca cgataaccta ccttatttac ggaatgggaa
    11821 attgaaagca gctaataaag cttgaccttc ttcatcagtt ttcgctgagg tggtgatagt
    11881 aatatctaaa ccacgaacac gatctacttt atcgtagtcg atttcaggga aaatgatttg
    11941 ttcacgaaca cccatactgt aattaccacg accatcgaat gacttagcgt ttaaaccgcg
    12001 gaagtcacga atacgtggaa cagcgatagt aatcaatctt tcaaagaatt cccacatacg
    12061 ttcaccacgt agggttactt tgcaaccgat tggataccct tgacggattt taaagcctgc
    12121 aacagatttg cgagctttag ttactaaagg tttttgaccg ctgattgctg ctaaatccgc
    12181 tactgcgtta tctaacagtt ttttgtcggt caatgcttca cccacaccca tgttaagggt
    12241 aatcttttcg attcgtggga cttgcatgac agatgagtag ttgaattttg cttttaattc
    12301 attaactact gtatctctgt agtaatcatg cagtttcgcc atcacattac tccagttaat
    12361 taaattgttt tctcgttaga tttgaagaaa cgcacttttt tgccatcttc gaatctaaat
    12421 cctacacggt cagctttgtt ggtttcaggg ttgaagatcg caacgtttga aacatcgatt
    12481 gcagcttctt tcttcactaa accaccagct ttgcctaatg caggaactgg tttttcgtgt
    12541 ttagtgatga tgttgatacc ctcaacaaaa actttaccat ttggtaacac tttagttacc
    12601 ttaccacgtt tgcccttatc tttaccggta agaacaatta cttcatcgtt ttgacggatt
    12661 tttgcagcca ttacattctc cttatagtac ttctggagct aaagagatga ttttcataaa
    12721 cttctcagaa cgaagttcac gagtcaccgg tccaaaaata cgagtaccga ttggttgctc
    12781 agtgttattg tttaaaatta cacaagcatt gccatcgaaa cgaataactg cgccatctgg
    12841 gcgacgaaca cccttcttgg tgcgcacaac aactgctttt aacacatcac cttttttcac
    12901 tttaccgcgt ggaattgctt cttttacagt aactttaatg atatcgccaa tagcagcgta
    12961 acgacggtgc gatccaccta gaaccttgat acacattacg ctacgagccc ctgagttatc
    13021 agcaacatcc agcatagtct gttcttggat catattagtg ctccgttaaa ataaaaaaac
    13081 accctttcgg gacgaaccta tttatacaaa tataaatagg gtgcaaaata tactacaaaa
    13141 accactagtt aatcaagtga atttttaagc taatttaata gtttaagtaa gcttatttat
    13201 aaattgtttc aactatcaat aaactgtcct ataactcata taaaaacccc aagatatctt
    13261 ggggtttaac taacattact ctacagtcac cgcttttgca aggttacgag gttggtcaac
    13321 gtccgttcct ttgattaagg caatgtgata tgaaagtagt tgtaacggca cggtgtagaa
    13381 aatcggtgcg gttacttcat caactttcgg cattacaatc gttttgaagc cttctgcttc
    13441 ttcaaaacct gcatcgtgat cggcaaacac atataactga ccgcctcttg cacgcacttc
    13501 ttcaatattg gatttcactt tctcaagcaa gtcattttcc ggtgctacca ccactaccgg
    13561 catatcgcta tcaattaatg ctaacgggcc gtgttttaac tcgcctgcgg cataagcttc
    13621 tgcgtgaata tatgaaatct cttttaattt caatgcagat tccatcgcaa ccgggtaata
    13681 ttctccacga cctaagaaca atgtgtggtg tttatccgca aaatcttccg ataatttttc
    13741 gatttgttta tcgaacacta acgcactttc aatttgtgct ggtaagcgtt gtaaagattg
    13801 cacgatatgg tgttcttgct cttcactcat tctgccttgt aagcgtccaa tcgccacatt
    13861 taataacaat aagcaagtta attgagtagt gaatgctttg gttgatgcta caccaatttc
    13921 aacaccagct ttggttaaga atgcaaaatc ggattcacgc actaatgaag aacttgccac
    13981 attacacacc gtcattgccg ccatatagcc agattctttc gctaaacgca gtgcagctaa
    14041 cgtatctgcg gtttcacctg attgtgaaag cgtgattaat aagctgttcg ggcgagtaac
    14101 gaatttacgg taacggaatt cggaggcaat ttccacatca cagctcacgc ctgcaatgga
    14161 ttcaaaccaa taacgtgaaa ccataccagc attgtaagag gttccacaag ccacaatttg
    14221 cacgtgttct actttcgata aaatctctgc cgcattcggt gcaatggctg aaatatctac
    14281 tttaccgtct ttgatacgac catctaaggt attcataatc gcaaccggct gctcaaaaat
    14341 ctctttttgc atatagtgac gatattgtcc tttatctgcc gcgtctgcct caaaattgcc
    14401 ttcgtgaatt tcacgctctg ccttgttgcc ttcacggtca taaatatcca ctgtgcgacg
    14461 ggtaatttcg gctacatcac cttcttctag ataagcaaaa cggcgagtta cgcttaataa
    14521 tgcaagtggg tctgaagcaa ggaagttctc gcctacaccg taaccaatca ctaacgggct
    14581 acctgagcga gccacaatta aatgctccgg ctcttcttca tttaatacca ctgtgccgta
    14641 agcaccacgc agttgcacca cggttttttg taccgcttcc aataatgaag aagcagaacg
    14701 caattcccat tcaactaaat gagcaatgac ttcggtatcg gtttgagatt ggaacacata
    14761 accacgctct tgtaacacta tttttaactc ttcgtagttt tcgataatcc cgttatgaac
    14821 tactgcaatt ttgccactgc ggtgtgggtg agcattagtt tctgacggct cgccgtgcgt
    14881 tgcccagcga gtgtgtgcga tcccagtgcc gcctaatagt ggcttagtgt ctaacgcctc
    14941 atctaaggct ttgactttac cgacacggcg tacaatttgc attgttttat catctgcatt
    15001 taatactgct acaccagcag agtcatatcc acggtattct aagcgatgta aaccatcaac
    15061 caagatttct gcgatatcac gttgtgctac tgcacctaca attccacaca taaatttgct
    15121 ttcctatgtt taagtttaaa aattcatttg agctactgct attttgcaat aaccacttcg
    15181 acacccattt tttcgatttg ttctttcgtt tcaaaactta attgactgtc ggtaataatt
    15241 ttggtaatat tttgccattt caattcaata ttcggcattt tccgaccgat tttttgcgat
    15301 tcaattaaca caatcacttc acggctcact tctgccatca cctgacttaa gccaactaat
    15361 tcattaaagg tagtcgtgcc tcgagccaaa tctaaaccgt ccgcaccaat aaaaagctga
    15421 tcgaaatcat atgaacgcaa tacctgttct gctactttgc cttgaaagga ctcagaacgg
    15481 ctatcccaag tgccgccggt catcaacact gttggttcgc attcgaggga agtcaattcc
    15541 gtcgctaaat tcagcgaatt tgtcatcacc accaagccgg tttggttcaa tgcttttacc
    15601 aaagctccgg tcgtgctgcc gctgtcaata atgatgcgat tatgatcacg aatacaatca
    15661 cgtgcggctt gagcaatcat tttcttttga atcgaaagtt gctcaataaa cgcttcttcc
    15721 atcatttccg atggaatttt taccgcccca ccatacttac gcaataaaaa accactttct
    15781 tccaaagcgg ttaaatcttt tctaatcgta acttcagacg tctcaaagaa atgagcgagt
    15841 tcatctacac tcacttcatt tttctcttgt accatttgaa caattaaatg gcggcgttgt
    15901 tgcgtgttac gttttgacat tataatcttc acttaaattt cgtttcaaaa cttttgcatt
    15961 ataaagaaag ctcgcgaaaa gaaaagcaga aaatgcaaaa tttacaaaat ctatacaaaa
    16021 taaaaccgct tgtaatattg atttacaagc ggttgatttc ttgaaatttt ttgcaattat
    16081 ttgatttggc taccaatcac gccaccaagt gcggcaccac ctaaagttgc accggtagat
    16141 tcaccaatcg cgtgaccagc cacaccgcca attgctgcac cgattgcagt attacgttgc
    16201 gtttttgtca tattgttaca gccagacaca gcaaccatta ataccattgc accaacaact
    16261 ttcaaaatag atttcataat aatccctcat aattaatcaa tttcaaataa gccaatattc
    16321 ttggctatgc tataagattt aatttattta gaaaggttca actactacca cctatgaatt
    16381 gcaaattttt tcacaattta ggccgcttgt tgattgaact gtgagcttgc tcacagaatt
    16441 ttatggtatt tcttgctata ttgtatagca atctatgcga taactcatta aggaaataaa
    16501 aatgaaatta aaaaaattat ctttagcact ctcgacttta ttactcggtt cagcctttgc
    16561 caactctgct ttagcggaag gtcgtttaac cgtttattgt agtgccacta atgaactttg
    16621 tgagcaagaa gtgcaagcat tcggcaaaaa atataatgtt aaagtagcat ttgtgcgtaa
    16681 tggttcaggc agtacattgg cgaaaattga agcggagaaa aacaatcctc aagctgatgt
    16741 atggtatggc ggtactttag atccacattc acaagctgca gaaatgggtt tactcgagcc
    16801 gtataaatca ccgaatctcg aacaaattat cgaaaaattc cgtgatccgg caaaattaaa
    16861 aggcaactac tcttcggctg tgtatatggg gattttaggt tatggtgtga atttagaccg
    16921 aatcaaaaaa ctcggcattg aaaaagtgcc tagcacttgg gaagacttgc tcgacccacg
    16981 cctagccggt gaaatccaaa ttgccgaccc acaaagctcc ggcacggctt atactgcgat
    17041 tgcgaccttc gtacaacttt taggagaaga aaaagccttc gactatttcc gcaaattaca
    17101 caaaaacatt tcacaatata ccaaatccgg catcacaccg gcacgcaata ccgcccgtgg
    17161 tgaaaccgct atcggtatcg gtttcttaca cgactatgcg attgagaaga aaaacggggc
    17221 taacattgaa atgaccgcac caacagacgg cacaggctac gaattaggtg gtgtgagtat
    17281 cctcaaaggt gcaagaaatc ttgataatgc aaaactgttc gtggattggt cgctttctaa
    17341 agaagctcaa gaactctctt ggcaaaaagg caatgcgttc caagtattaa ccaacaccac
    17401 cgcagaatct tccccttatg ctctagatcc gaaaaactta aacttaatca actatgattt
    17461 cgagaaatac ggctcgagcg aagagcgtaa acgcttgatt gataagtggg taaatgaagt
    17521 aaaattagcg aaatagtgtt aatctttcca ctgaggggat aagcaattat cccctctcta
    17581 attataagaa tctgtgaggt gttatgcaga atttttcctt ttcccgaccg cttgtttggg
    17641 tgcttatcgg gttactcggt tttctcttgt taccgtctaa agccttagat tatgggctgt
    17701 ttgactcaac ctctgatgaa ctgctcgccg caatgggctg ggcgagtctg aacatcactt
    17761 gggcgtggtt tttaccgctt ttggtatttt tattgccaaa ttcgaccgct tgtaaaacta
    17821 gagccaagct ggaattagta gggctgggcg tgctgttcgc ctttattttc ctgtcagcga
    17881 ttgtgctgaa aatcagcctc ggttatgcgg tgttgccgtt gattattgcc attatggggc
    17941 ttgcgacccc aaatttagca acgctcaaag taatgcaggg tgaccgcttt attatcggct
    18001 cgttactgag cattattctg ctgattttct tttttattgt gtatccgacc atcgccattt
    18061 ttgtgtcgat gttctacaac ggctcggaat ttgtgccaag ccaagtgctg acaattttgc
    18121 aacaacctta tgtcgttcga gtcatcggta actcgctctc ggttgccggc acggtgggcg
    18181 ttctctccac cctattcggc ttagcctttg ctctctacac cactcggatt gctaaacgct
    18241 cggcgtttat cgggcggatt ttctcgattt tacctatcgt caccccgccg tttgtggtcg
    18301 gtttaggcgt aaccctgatg cttgggcgtt ccggctatgt tactgaattt ttagtggatt
    18361 actttggctt tgccaacaat tggctgtacg gtttcaccgg tattgtgata gcccataccc
    18421 tcgcgctcac gccaatgtcg tttatgattt tggaaggggc attgaaatcc attcacccat
    18481 cggtggaaga agcagcttac accctgcgtt ccaaccgcta tcaagccttt tttaacatta
    18541 ttttcccatt gttaaaaccg gcattggcaa actccttttt agtggtggca attcaatccc
    18601 tcgccgattt cagtacgccg ttagtattgg gcggtagctt tgatgtgatt gcaacccaaa
    18661 tctacttcta cattgccggt tctcaactgg attatgcctc tgctagcacg cttggggcaa
    18721 ttttgttggt gttctcctta gccattttcg tgatccaata cctctggatc ggcaatcgct
    18781 cttatgtgac ggtgtccggc aaatcctatc ggggtgatgt ccaagactta ccaagcggta
    18841 tgaaatggct gattatttgc accttattgt tctggggaac cttcaactta gtgctgtacg
    18901 gcagtatttt ctacggcagt ttcaccgtga actggggtgt ggattatacc ttaacccttg
    18961 ataactacat caagctattc gggcaagggt ttagcgatgg cggtttccct tcgttaattc
    19021 aaaccgtgat tttcgctgcc gctgccgccc cgattactgc actattcggc ttgctgatcg
    19081 cctatgtgac agttcggcgt gatttcaaag gcaagaaaac cctggaattt ttaaccctgc
    19141 tctgctttgc cgtaccggga acggtggcag gtgtttctta cattctcgcc tttaacgatg
    19201 ccccgattta cctaaccggc accggtatga tcatcattct ctcaatggta atgcggaata
    19261 tgcctgtggg tatgcgagcg gcaattgccg gcttagggca gttggataaa tcgctggacg
    19321 aagcctcgct ctcgctgaaa gccggttcgt tcaaaacgat gctgtttgtg gtgttaccgc
    19381 tactcaaacc ggcactgctc tccgccctcg tcaccagctt tgtgcgggca atgacgactg
    19441 tcagtgcgat tgtattctta gtcaccgccg acactcgtgt ggcaacctcc tacattctca
    19501 accgtgtgga agacggtgaa tacggcattg cgattgccta cggctcaatt ttaattgtgg
    19561 tgatgatggc gattatcctg atttttgact ggattgtcgg cgacacccgt atcgcccgtt
    19621 ctaaggcgaa aaaaatgtaa aaagacatct actctctccc tttatgggag agagacagaa
    19681 aaatacttcg ttcagaagta tttttcagag agagggatat aattaaaagg acaatatatg
    19741 aacaacgatt tcttagtatt aaaaaacgtc accaaatctt tcggcaaggt gacggtcatt
    19801 gataatctca acctcagtat tccgcaaggt aaaatggtga cattactcgg gccgtccggc
    19861 tgtggtaaaa ccaccgtact gcgtttagtg gcagggctgg aaaacccgac ttcggggcaa
    19921 atttttattg atggcgaaga tgttacccaa agttcgatcc aacaccgtga tatttgcatt
    19981 gtgttccaat cttatgcgtt atttccgcat atgtcgattg gcgataatgt cggctacggc
    20041 ttgaaaatgc agggcgtacc gaaagaagaa cggctgcaac gagtgaaaga ggcgttggaa
    20101 ttggtggatt taggcggctt tgaagatcgc tttgtcgatc aaatctctgg cggacaacaa
    20161 caacgtgtcg ccctcgcccg tgccttaatt ctgaaaccga aagtgctact gttcgatgaa
    20221 ccgctgagta accttgacgc taacttacgc cgttcaatgc gggagaaaat ccgtgaatta
    20281 cagcaacgtt taaacattac ttccctttat gtgactcacg atcagtccga agcctttgcg
    20341 gtttcagatg aagtaattgt gatgaacaag ggaaaaatta tgcaaaaagc tccagccaaa
    20401 gagttatacc ttcgccctaa ttctttattc ttagcaaatt ttatgggtga aagcagcatt
    20461 tttgaaggca cgatagctgg caaccaaatt aatataaatg gatatcaatt tacgttagca
    20521 aatgctgaac aatttgagtt acccgatggg gaatacttag ttggcattcg tccagaagct
    20581 attcatttag ctgaacaagg aaatataagt caactctgta aaattaaaaa tgcagtttat
    20641 atgggaaatc attgggaaat tatagctgaa tgggaaggga aagatttatt agtcaatact
    20701 aaacctgaaa atttttaccc tcatatcaaa caggcctatg tacattttat cgaacaaggt
    20761 gtttttcttt taaagaaaga gctataacga atttatacta aattaagagg aaggtagtta
    20821 taactattta gcaattttga gaaaaatagg ccgcatgcaa aatctcttga tgacaagcgg
    20881 tcttttctcg ccga
//
LOCUS       DANLRW010000037        20141 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.037, whole genome shotgun sequence.
ACCESSION   DANLRW010000037 DANLRW010000000
VERSION     DANLRW010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 20141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20141
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.037"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            41..514
                     /gene="nrdG"
                     /locus_tag="PXA71_001142"
     CDS             41..514
                     /gene="nrdG"
                     /locus_tag="PXA71_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HDL5105263.1"
                     /translation="MENLRFSSEQIVWQEVPNETSLAFLITGCPLGCKGCHSADSWKA
                     CLGKELSSEYLSERLKRYQGLISCVLFMGGEWEAEKLLPLLQLAKKQGLNTCLYSGLE
                     QHEIAETLLHELTYLKTGRWIAERGGLESLTTNQRFTDLRNNQNLNHLFIRGASI"
     gene            511..2292
                     /gene="nrdD"
                     /locus_tag="PXA71_001143"
     CDS             511..2292
                     /gene="nrdD"
                     /locus_tag="PXA71_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HDL5105264.1"
                     /translation="MIRLQPTQLDGKLHFINQYIQAKNAADGSKMDANANVTQKNIAT
                     MEQELMKDFFVQINRAKVSEKIAKIFGKETACEYLRQIEAHEIYVHDETSLKPYCVSV
                     TMYPFLRDGLTKLGGESKAPKHLASFCGSFINFVFAVSSQFAGAVATVEFLTYFDYFA
                     RKDYGDNYLQTHRSDIENHLQQVVYSINQPAAARGYQSVFWNISVYDKFYFEAMFSRF
                     VFPDFEKPNWETTSKLQLFFMQWFNKERSKAILTFPVVTAAMLTEKGKCKDDEFANQM
                     AKELSQGNSFFIYQSDNPDSLASCCRLRNEISDHSFSYSLGAGGVATGSINVITINMN
                     RLVQDNRDLSEEVSKIHKYQYAYRKLMEEYLAAGMLPVYDAGFISLHKQFLTIGINGM
                     AEAAESQGLTVGYNPDYIDFVQSRLKIIFQANQAAGEKYGVKFNTEFVPAENLGVKNA
                     KWDKEDGYFVPRDCYNSYFYVVEDEEINALDKFLLHGRELIEWLDGGSALHLNLDEAL
                     TQTGYRSLLDTAAKTGCNYFCINVKITICNECSHIDKRTLHSCSKCGSDNIDYGTRVI
                     GYLKRVSAFSSARQKEHSLRFYHREAA"
     regulatory      2349..2445
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            2502..3320
                     /gene="thiM"
                     /locus_tag="PXA71_001144"
     CDS             2502..3320
                     /gene="thiM"
                     /locus_tag="PXA71_001144"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HDL5105265.1"
                     /translation="MTTSLPYHSHYLQKIRQNRPLVHNITNIVAANFSANGLLALGAS
                     PIMAAAIEEMESVPALSNAVVINIGTLIGKEVEAMELAGKTANRLGIPLILDPVGVGA
                     TPFRRQTVETLVDQIHFTAIRGNAGELATLAGVEWQAKGVDAGEGSHNVVEIAQQIAK
                     RYQTLVAISGETDVVSSGSHTALLHNGSPMFPKITASGCLLSAVCGAFLAVADKEHYF
                     NALIEACAAYAVAGEVAAQALKPTQYGQFAVNLLDTLGALTPETVEQYVRVEYV"
     gene            3313..4626
                     /locus_tag="PXA71_001145"
     CDS             3313..4626
                     /locus_tag="PXA71_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5105266.1"
                     /translation="MSKTHSNPTKVAVASMVGTAIEYFDNYIYTMAAVLVFNVQFFNS
                     DDPVSNQLMSLSVLALAFFTRPMGSILFGHFGDKYGRKQTLIASLLLMGLSTVAIGLL
                     PNYAAIGIWATVLLCLCRIGQGLGLGGEWGGAALVATEHAPKHKRAFFGIFPQMGAPI
                     GLLLANGAFYLVNLIYGEQTFLDWAWRIPFVASIVMIAIGLYIRIKISESPIFLKAEQ
                     QGKNRHTPLKTLFSQHLKPFMIGVLIATAGYVLFYILVAFTPIFVKSPVAVSQAGHAT
                     GLGLPVNLYTQYLLITSVIFGIAIFFSGIYSDKIGRRLLLLLATGATVVYGLTMPFFL
                     ENGTPTSIFIFLTIGMILIGLSFGPMAVILPELFPTEVRYTGASLAYTAAGILGASVF
                     TIIAVKINENFGLFGVGGYLSVASLLSFWALWQVHETKDLELEEI"
     regulatory      4762..4858
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4926..6455
                     /gene="thiE"
                     /locus_tag="PXA71_001146"
     CDS             4926..6455
                     /gene="thiE"
                     /locus_tag="PXA71_001146"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDL5105267.1"
                     /translation="MSNYSNSPYQPNVIWTVAGSDSCAGAGLQTDLHTFHDFNLVGCS
                     VVTSVTAQHPHGVLCVTPVDDHTFRQQFEALLVQGYPNAIKIGLLCSQAQVEILCEYI
                     QKIRAESSHYCYVVYDPVAVASSGQALSDSILLQIVQQKLYPLVDLITPNGTELALLS
                     DTEIQTFGDVKTASHKLFAQGIKAVLAKGGHFEWLGETVRDYLLTANEIYAFSHARQQ
                     SVNTHGTGCTYASAVGAMLATGFDLADAVTVATAYLQKGLSEKQGRGQTALSSLCHTG
                     YPDDIAFFPQTELISAPLKLPKEPFAPTEYQLGLYPVVDSVKWLERLILVGVKTLQIR
                     IKNRPLAEIEQEIAHSVALAKQHNVRLFVNDYWQLAMKYQAYGVHLGQEDLATADLNA
                     IQQSGLRLGVSTHCYFEIMRALAVKPSYIAFGHVFPTQTKVMPSQPQGLTNLAKYVAL
                     VAPLNIPTVAIGGINEQSIENVMHTGVGSAAVVSAVTQAKDWQQAVKNLAKFANGGRN
                     E"
     gene            6448..7620
                     /gene="cytX"
                     /locus_tag="PXA71_001147"
     CDS             6448..7620
                     /gene="cytX"
                     /locus_tag="PXA71_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hydroxymethylpyrimidine transporter
                     CytX"
                     /protein_id="HDL5105268.1"
                     /translation="MNRTLSTLNSGLIWAGAGISASAIVVGTWIAPLGWQQGLLAIVL
                     GHLLGGILFFAAGLIGAKTGKNAMQTVQISFGRGSVFFSLANVLQLVGWTAIMIYTGA
                     EISNALSLALWEYSAFSLWAIVLGLLIVLWLFTGSNQVGKFKLVTLIAMFLLTLWLSI
                     KVLNGQENFPVSGEMPFSTAVELATIMPLSWLPLVSDYTAKAKKPFAATLSATIGYLI
                     TSAWMYALGLGMVLFTGQTEIAPMLLMTGMSLIGIMVMILSTVTTTFLDAYSAGVSAG
                     NITAKFKETPTAILVTIIGTLLAISLPVTQYENFLLLIGSVFAPMIAVQIADFFVLKR
                     HQAQPNVDWVAAGLWLVGFVLYHLLSYHQVHLLLGLTIPVMLVIFLSTIFVRRFTK"
     gene            7659..7868
                     /locus_tag="PXA71_001148"
     CDS             7659..7868
                     /locus_tag="PXA71_001148"
                     /inference="COORDINATES: protein motif:HMM:NF015737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5105269.1"
                     /translation="MESLVLNNDWVVTPQAQLAYHTINGKADEERLNLLVARAGVRVA
                     KGFALNNGWNLQPYAEVNGIAEKGQ"
     gene            7876..8052
                     /locus_tag="PXA71_001149"
     CDS             7876..8052
                     /locus_tag="PXA71_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5105270.1"
                     /translation="MQVNQYQFGVAENKGRVQGSLGLSAGNGNHRLGLEASVASGKKL
                     KQPFNVLVNYRYQW"
     gene            complement(8093..9949)
                     /gene="sppA"
                     /locus_tag="PXA71_001150"
     CDS             complement(8093..9949)
                     /gene="sppA"
                     /locus_tag="PXA71_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDL5105271.1"
                     /translation="MLTILKAFYRIFRCIRECVINLFFILFILLLVPVVAFISSSGST
                     QKPVFNQGALRLNLDGYLADNREEFTDFYRLVQSELGSSEPFKISTFDVVQAISHAKN
                     DPKITGLVLDLQKLQSADFSSLDFIGNEINNFKQSGKPVIAVGEDYSQKQYYLASFAD
                     EIYLNKVGAVDLKGLNYSNTYFKTLLDKIEAEPHIFRVGTYKSAVEPFMRDDMSEEAK
                     QNARGWLNGTWQQTVATLAQNRNIEPQALDLSPANYIEKYKQAKGDDAQLALNQKWVS
                     QLVSSQESRDKLIAQFGKNSEGSYNQIEFLDYMTELNDRFAEVNAPKIAVVNVEGAIA
                     GGESDEMNVGSETLVKLLQQARDDKNVEGLILRINSPGGSAVASELIRQEVEAFQQAG
                     KPVVASMGGMAASGGYWIAATSDKIIASPNTLTGSIGIFGLAVTFEKTAKNLGVSEDG
                     IATSALAQQAGLKSLPQEQAEVLQIGIENGYDRFLELVSRGRKMPKEVVDKVAQGQVW
                     LGTDALKHGLVDELGNFNVAYNALSELINQKREAENQPKVEQFGLQWFAEQDDSLFGT
                     LARDFKAQLQFSVANWLDLPLLKQPQQQLETLSRFNDPKQMYLYCLNCGKID"
     gene            10052..10615
                     /locus_tag="PXA71_001151"
     CDS             10052..10615
                     /locus_tag="PXA71_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL5105272.1"
                     /translation="MQILDLLHHRRSNKKFGDKAPNAEQLEQILKAGLRVPDHGRLKP
                     YRFVVIEKSGMPQFGECLKSAVAEFDMGEERLKKAEKLANQAPMIIGVVATLDDSIAK
                     VPSWEQMITAGCATYAIQLAANAQGFDTVWITNKWINGSALRSAFGCQESDKIIALIM
                     LGSPAEGEQIALAPESESLEGFVRYLK"
     gene            complement(10686..13010)
                     /locus_tag="PXA71_001152"
     CDS             complement(10686..13010)
                     /locus_tag="PXA71_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HDL5105273.1"
                     /translation="MTDLNLKISQIIAGELNVGSHQILAAITLLGEGNTIPFIARYRK
                     EVTGGLDDTQLRHFETRLIYLREMDERRQTILKSIEEQGKLTDELKAKILSSESKTEL
                     EDLYLPYKPKRRTRGQIAIEAGLEPLADSLWNDPKQDPETLAANFVDAEKGVADTKAA
                     LDGARYILMERFSEDAELLAKLRQYLTAYATLESKVIDGKEEEGEKFRDYFAHSEPFN
                     SVPSHRALAMFRGRNEGVLSLSLNADPTAEEGTKSSHCEEIIREHLGVIFNNQPADKW
                     REQVIAWTWKIKAALHLETELMATLCEKAEEEAIDVFARNLSALLMAAPAGARNTMGL
                     DPGLRTGVKVAVVDNTGKLLDTATIYPHTGREAEAQLAIFSLIKQHNVELIAIGNGTA
                     SRETERFAKAVIKEIKENKPQTVVVSEAGASVYSASEFAANEFPNLDVSLRGAVSIAR
                     RLQDPLAELVKIEPKAIGVGQYQHDVNQSQLARKLDAVVEDCVNAVGVDLNTASAPLL
                     ARVAGMTKTLAQNIVAFRDENGRFTSRSELKKVPRLGPKAFEQCAGFMRIIGGKNALD
                     ASSVHPEAYPVVEKILQATTSTLAELMGNNSKIHSLNAKDFVDEQFGLPTVNDIFKEL
                     EKPGRDPRGEFKTAVFMDGVEEITDLKAGMILEGTVTNVANFGAFVDIGVHQDGLVHI
                     SMLSNSFVEDPHTVVKAGDVVKVKVLEVDAARKRIALTMRLDDKPTDKKEPTSGRNSA
                     EICKNTQKNDRLQSNNRNAFGNNAFADALKGWKK"
     gene            complement(13010..13564)
                     /gene="pilW"
                     /locus_tag="PXA71_001153"
     CDS             complement(13010..13564)
                     /gene="pilW"
                     /locus_tag="PXA71_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis/stability protein PilW"
                     /protein_id="HDL5105274.1"
                     /translation="MFAKFFPKMTACILIFLLAACSSLPPSSSEVEFNRSEAVKARIN
                     LALAYLEQNDFPKAKQNIDKALAHDEKDYLPYSVLAYYYQQTGDAENAEKAYQTALKL
                     SQNRPDVLNNYGTFLCKQGQFQQAYQQFEQAVKSKAPYYHQADSLENMVLCAKKEPNL
                     QKIAETLTELEKLDKPRANLLKEN"
     gene            13784..14035
                     /locus_tag="PXA71_001154"
     CDS             13784..14035
                     /locus_tag="PXA71_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5105275.1"
                     /translation="MKIVVFQRKALKQLRKIPTGAEIRRKCDDLAYFPYCANIKALTN
                     HQYDYRFRVGNYRIFFNIEGETMNIVSIEEVKKRDERTY"
     gene            14019..14366
                     /locus_tag="PXA71_001155"
     CDS             14019..14366
                     /locus_tag="PXA71_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5105276.1"
                     /translation="MKELTNIQYLNNEEGKPAFAVLPIATLEWLKQKANIKTAIETGI
                     PSAVAGIALDNNYSALRAWREYLGLTQEEVAQRLGISQSAYSQHENAKNLRKTTRIKI
                     AYALGLNEEQLDF"
     gene            complement(14407..15567)
                     /gene="trmG/rlmN"
                     /locus_tag="PXA71_001156"
     CDS             complement(14407..15567)
                     /gene="trmG/rlmN"
                     /locus_tag="PXA71_001156"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HDL5105277.1"
                     /translation="MSELITNAGCGSAEQPKEKINLLNLNRQEMRELFAEMGEKPFRA
                     DQLMKWIYHFGEENFDNMSNINKVLREKLKRIAEIKAPEVAVEQRSADGTIKWAMQVG
                     DQQIETVYIPEDDRATLCVSSQVGCALACTFCSTAQQGFNRNLSVAEIIGQVWRASKI
                     IGNFGVTGVRPITNVVMMGMGEPLLNMNNVIPAMEIMLDDFAYGLSKRRVTLSTSGVV
                     PALDKMREQIDVALAISLHAPNDELRDELVPINKKYNIKMLMDSVNKYREVSNANHGK
                     VTIEYVMLDHVNDSTNHAHQLAEVLKNTPCKINLIPWNPFPEAPYGKSSNSRVDRFQK
                     TLMEYGFTVTVRKTRGDDIDAACGQLAGDVIDRTKRTLEKRKFGQGIAVKTH"
     gene            15827..16723
                     /locus_tag="PXA71_001157"
     CDS             15827..16723
                     /locus_tag="PXA71_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HDL5105278.1"
                     /translation="MKLSTIKKALVLTFGLSAAMAMAEPFKVVTTFTVIQDIAQNVAG
                     DKATVESITKPGAEIHDYQPTPKDIVKAQKADLVLWNGMNLERWFERFFENVKGKPAV
                     VVTEGITPMPITEGEYKNLPNPHAWMSTDNALIYIENIRAALVKYDPQNADTYNANAK
                     AYAEKVKGIAEPLRQRLAFIPEQQRWLVTSEGAFSYLAKDYNLKELYLWAINAEEQGS
                     PKQVKKVIDGVKANKIPVVFSESTVSDKPAKQVAKETGALYGGVIYVDSLSEKDGPVP
                     TYLDLLKVTIGTIVEGFERSKK"
     gene            16736..17479
                     /locus_tag="PXA71_001158"
     CDS             16736..17479
                     /locus_tag="PXA71_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDL5105279.1"
                     /translation="MTTVSASISVENLSVRYNNGHIALQDVSFHLENGTICALIGVNG
                     GGKSTLFKSLMGLVKPLTGSVKLSQLPIAKALKQNLVSYVPQSEEVDWQFPVSVYDVV
                     MMGRYGYMNFLRRPSQTDKLKVEQAMQRLDVLHLKDRQIGELSGGQKKRVFLARALAQ
                     ESKIILLDEPFTGVDVKTENAIVELLKQLKNEGHLILVSTHNLASVPSFCDQVLMVNR
                     TLLAKGKTEEIFNNQNLERVFGGLLHYQK"
     gene            complement(17536..18345)
                     /locus_tag="PXA71_001159"
     CDS             complement(17536..18345)
                     /locus_tag="PXA71_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL5105280.1"
                     /translation="MLNWILEPLQFEFMQIALITAILVAGVSAVLSCYLVLKGWSLMG
                     DAISHAVLPGVVISSLAGLPLSIGAFFSGLGCALSVGYLKENSRLKEDTVMGIVFSGM
                     FAFGILLFTAFNTGEHLTHILFGNLLGVTKSDLLQTLLISLFTFVVMVAKRKDFLLYC
                     FDVNQAKVAGLPVRLLHYGLLSLLALTIISAMQVVGVILVVAMLITPGITAYLLTKRF
                     DSMLLIALGVAIFSSVFGTLLSYHIDAATGPTIILVQAAIFFLSFAYSKIH"
     gene            complement(18338..19198)
                     /locus_tag="PXA71_001160"
     CDS             complement(18338..19198)
                     /locus_tag="PXA71_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDL5105281.1"
                     /translation="MLDLLLEPFTYNYMQKAIFVSMGVGLVCAFLSAFLMLKGWSLIG
                     DALSHAVVPGVAIAYALKLPYAFGAFFSGILAALSILWVKSLTKIKEDAVIGFIFTTF
                     FALGMFIVSLNPTSVDVNSIVMGNILGIADDDLWQVVLIIAISLLGLILFWKDLLLVF
                     FDEHHALSVGLSPLRYKVIFFTLLSACVVVALQTVGAILVIAMVVTPGATAYLLTDRF
                     PRLVLIAMLIGTLTSGIGAYLSYFLDGATGAVIVCLQTLIFLFAFCFAPKYGLITQKR
                     KLHRVEVQNA"
     gene            complement(19272..20057)
                     /locus_tag="PXA71_001161"
     CDS             complement(19272..20057)
                     /locus_tag="PXA71_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HDL5105282.1"
                     /translation="MMKKITILGLGWLGLPLAEALQNKGWRVAGTKRTVGELAIECYP
                     LDLNALAVTSEIEQLLAADALVIALPLSQIRPENYGCGIQTLVSLAIEKGLKHLVFTS
                     STSVLPMKSGVFDENAVVDSANLLVKMENWLLSQPIHCDILRLAGLVGKKRHPVFYLA
                     GKQNLSGAGQPVNLVHLEDCIAAISLLLEQPNGQRIFHLCAEQHPSRKDYYSEMAKRF
                     GLADLHFSEENQPLVRLIKADKICQELGFRYYYPDPYQFKVDI"
BASE COUNT         5784 a         4505 c         4232 g         5620 t
ORIGIN      
        1 aatgttaaaa aacacaatat attgtgttaa tgaattagta atggaaaatc tcagattcag
       61 ctcggaacaa attgtttggc aagaagtgcc gaatgagacc tcacttgctt ttctgattac
      121 aggctgcccg cttggctgta aaggttgcca tagtgcggat agctggaaag cctgtcttgg
      181 gaaagagctt agcagtgaat atctctctga acgcctaaaa cgctaccaag gcttaattag
      241 ctgcgtattg tttatgggcg gagaatggga agcagaaaaa ttactgccgc tgttgcaact
      301 ggcaaaaaaa caggggctaa acacctgtct ttatagtggt ttggagcagc acgaaatcgc
      361 cgagacttta ttacacgagc taacctactt aaaaaccggg cgttggattg ccgaacgagg
      421 aggattggaa agtttaacca ccaaccaacg ctttactgat ttacgcaata accaaaatct
      481 taaccatctt tttattcgag gagcttcaat atgattcgct tacaaccgac acaattagac
      541 ggaaaactac atttcattaa ccaatatatt caagccaaaa atgccgcaga cggttcaaaa
      601 atggacgcca acgctaacgt cacgcaaaaa aacatagcga caatggaaca ggagctaatg
      661 aaagattttt ttgtgcaaat caaccgagca aaagtgagtg aaaaaattgc aaaaattttt
      721 ggaaaagaaa ccgcttgtga atatttacgt caaatcgaag cacacgaaat ttacgtacac
      781 gatgaaacca gcctaaaacc ctactgcgtt tcagtcacta tgtacccttt cttgcgtgat
      841 ggtttgacta aactcggcgg cgaatccaaa gccccgaaac atttagcctc attctgcggt
      901 tcttttatca attttgtctt tgcagtcagt tctcagtttg ccggtgcagt cgccacggtt
      961 gaatttctga cctattttga ctattttgcc cgcaaagatt acggcgataa ttacttacag
     1021 actcatcgtt cagatattga aaaccacctg cagcaggttg tgtatagcat caaccaaccg
     1081 gcagccgctc gtggttatca aagcgtcttt tggaatattt cagtgtatga caaattctat
     1141 tttgaagcga tgtttagccg ttttgttttt cctgattttg agaaaccaaa ttgggaaacc
     1201 acttcaaaat tacaactttt ctttatgcaa tggttcaata aagagcgaag caaagcgatt
     1261 ctcactttcc ctgttgtgac cgcagcaatg cttaccgaaa agggcaaatg taaagatgac
     1321 gagtttgcca atcaaatggc aaaagagcta tctcaaggca attcattctt tatttatcaa
     1381 tcagataatc cggattccct tgcttcttgc tgccgcttga gaaatgaaat cagcgatcat
     1441 agcttctcct attcattagg ggctggaggt gttgcgacag gttcaatcaa tgtaattact
     1501 attaatatga accgtttggt gcaagataac cgtgatttaa gcgaagaagt cagcaagatc
     1561 cataaatatc aatacgctta ccgcaaactg atggaagagt atttagctgc cggtatgttg
     1621 ccggtttacg atgccggttt tatttcactg cataaacaat tcctgactat tggcattaac
     1681 ggaatggcag aagctgctga atcacaaggt ttaaccgtag gttacaatcc agactatatt
     1741 gattttgtgc aatctcggtt aaaaattatt ttccaagcta accaagcagc cggtgaaaag
     1801 tatggggtaa aatttaatac cgaatttgtg cctgctgaaa atttaggggt caaaaacgcc
     1861 aaatgggaca aagaggacgg ctatttcgta ccacgagatt gctacaattc ctatttctat
     1921 gtggtagaag atgaagaaat taatgctttg gataaattct tactgcacgg cagagagctg
     1981 attgaatggc tggacggagg ctccgctcta cacttgaatt tagacgaagc cttaacccaa
     2041 accggatatc gctccttgct ggataccgcc gctaaaaccg gctgcaatta tttttgtatt
     2101 aacgttaaaa tcacgatttg caacgaatgt agccacatcg acaaacgcac gttgcacagt
     2161 tgtagcaaat gtggctccga taatattgat tacggcactc gggtaatcgg ctatttaaaa
     2221 cgagtctccg cctttagttc cgcccgccaa aaagagcaca gcttgcgttt ctatcaccga
     2281 gaagcagctt aattgaaaac tgcagttgta gccctttaca accgcttttt tagtgattat
     2341 attaaagcct catttagtcg gggtgcttgc ctaagggcaa gctgagaaat acccgttgaa
     2401 cctgatgcag ttagcactga cgtaggaaac taaaggcgta aacccatcta ttccccgttg
     2461 gtgttggtgc gttgtttttc aatcatatta aggaataaac gatgaccaca tcactcccct
     2521 atcactcgca ttatttgcaa aaaattcgac aaaatcgacc gcttgttcac aacattacca
     2581 acattgttgc cgctaatttt tctgccaacg gcttattggc tcttggtgct tctcccatta
     2641 tggcagctgc tattgaggag atggaatccg tgccggcact cagtaacgcc gtggtgatta
     2701 atatcggcac gcttatcggc aaagaagtag aagcaatgga gcttgctggc aaaaccgcca
     2761 accgtttagg tattccgctc attcttgacc ctgtcggcgt tggagcaaca cctttccgcc
     2821 gtcaaacagt tgaaacctta gtcgaccaaa ttcacttcac cgccattcgt ggaaatgcgg
     2881 gggaactagc taccctcgcc ggtgtagaat ggcaagccaa aggcgttgat gccggcgaag
     2941 gctcgcataa tgtggttgaa atcgcccaac agattgccaa acgttaccaa accttagtcg
     3001 caatcagtgg tgaaaccgat gtggtaagct ctggctcaca cacagcttta ttgcacaacg
     3061 gcagcccgat gttccccaaa attaccgctt caggctgttt attaagtgcg gtatgcgggg
     3121 cattcttagc cgttgccgac aaagagcact atttcaacgc acttattgag gcttgcgccg
     3181 cttatgccgt tgcaggcgaa gtggctgctc aagcactcaa accaactcaa tacgggcaat
     3241 ttgccgtcaa tctgctggat acccttgggg cattaacgcc tgaaaccgtt gagcaatatg
     3301 tgagggttga atatgtctaa aactcactca aacccaacta aagtggcggt tgcctcaatg
     3361 gtcggcacgg cgattgaata ttttgataac tacatctaca cgatggcagc agtgctggtg
     3421 tttaatgtgc agttttttaa tagcgatgat ccggtttcca accaattaat gtcgctttcc
     3481 gtactagctc ttgccttttt cacccgcccg atggggtcga ttttattcgg gcatttcggc
     3541 gataaatacg gacgcaaaca aactctgatt gcctcgctct tattaatggg cttatctacc
     3601 gtagcaatcg ggcttttgcc taattatgcc gccattggca tttgggcaac cgtgttactc
     3661 tgcctctgta gaatcggaca aggtttaggc ttaggcggcg aatggggcgg agctgctctc
     3721 gttgccactg aacacgcccc gaaacacaag cgggcatttt ttggtatttt tccgcaaatg
     3781 ggcgccccaa tcggcttgct gttggcaaac ggagcgttct acttggtgaa tttaatttac
     3841 ggtgaacaaa ccttcttgga ttgggcgtgg cgaattccgt ttgtcgcttc tattgtgatg
     3901 atcgccattg ggctttatat ccgaattaag atcagcgaaa gcccgatttt ccttaaagcg
     3961 gaacaacaag gtaaaaaccg ccataccccg cttaaaactt tgtttagcca acacctcaag
     4021 ccttttatga tcggcgtgct gattgccacc gccggctatg tgttgttcta cattttagtt
     4081 gctttcaccc cgattttcgt caaaagcccg gtggcagttt ctcaagcagg acacgctaca
     4141 ggcttaggtt taccggtaaa tctctacacc caatatttgc tgattacctc cgtgattttc
     4201 ggcattgcga ttttcttctc cggcatttat tcagacaaaa tcggacgccg tttactgctg
     4261 ttacttgcca caggagcaac cgtagtttac ggcttaacaa tgccgttttt cctcgaaaac
     4321 ggcacaccga cttcgatctt tattttcctc accattggaa tgatcttaat cggcttaagc
     4381 ttcggcccga tggcagtaat tctacccgaa ctcttcccaa cagaagtacg ttacacaggg
     4441 gcttcgcttg cctacaccgc tgccggtatt ttaggagcta gcgtgttcac tattattgcg
     4501 gtcaaaatca atgaaaattt cggcttattc ggtgtaggcg gctatttatc ggttgcctca
     4561 ttactgagct tctgggcatt gtggcaagtc cacgaaacca aagatttgga attagaggag
     4621 atataaaaaa ccactcactt aacgacgggg caagttacca ccttgcccca agatgaggga
     4681 atgcaaattt ccctctaata gacttcacaa cggatatttt gcattttttt ataaaaaata
     4741 accgcttgta agctatacta aaaacgcttg tcggagtgcc gtaaggctga gatcgcaaca
     4801 gcgagatccg tggaacctgt aggttagtac ctgcgtaggg aacaagtttt acccaaattc
     4861 agattttggg atcattacca catctctggc aagcaaaacc ctaagcatat tatgaggatt
     4921 ttgcgatgtc taattattca aactctccat accaacctaa cgtcatttgg acggttgccg
     4981 gctcagattc ctgtgccggt gccggtctgc aaaccgattt acataccttt cacgatttta
     5041 acctagtggg ttgttcagta gttacttctg taacggctca acatccgcac ggtgtgctgt
     5101 gtgtaacgcc tgttgatgat cacaccttcc gccaacagtt tgaagccttg ctggttcaag
     5161 gctacccgaa cgcaatcaaa atcggcttac tctgctcgca agcacaagta gagatcttgt
     5221 gtgaatatat ccaaaaaatc cgtgcagaaa gctcgcatta ttgttatgtg gtttacgacc
     5281 ctgtggcagt ggcaagcagt gggcaggcgt tatccgacag tattttattg cagatagtgc
     5341 aacaaaaatt gtatccgctg gtggatttaa tcactccaaa cggcactgaa ctcgctttat
     5401 taagcgacac agaaatccag acctttggtg atgtgaaaac cgctagccac aaactgtttg
     5461 cacagggaat caaagccgtg ttagccaaag gtggacattt tgaatggctg ggggaaacgg
     5521 taagagatta tctgctgact gcaaatgaaa tttatgcctt tagtcacgcc cgacagcaaa
     5581 gtgtgaatac ccatggcaca ggttgcacct atgcttcagc ggttggagcg atgttggcaa
     5641 ccggctttga tttagctgat gccgtcactg ttgccaccgc ttatttgcaa aaaggcttat
     5701 cggaaaaaca aggcagaggg caaactgctt taagttcact ttgccacacc ggctaccctg
     5761 atgatatcgc tttcttccca caaaccgagc tgatttctgc ccctcttaaa ttgccgaaag
     5821 agccttttgc tccaacggaa tatcaacttg ggctttaccc tgttgtagat agcgttaaat
     5881 ggcttgaacg cttaattctt gtaggggtaa aaaccttgca aattagaatc aaaaatcgac
     5941 cgcttgcaga gattgagcaa gaaattgccc attcggtcgc actggcgaaa cagcacaatg
     6001 tgcgtttgtt tgtaaatgat tactggcagt tagccatgaa gtatcaggct tacggcgtgc
     6061 atttagggca ggaggattta gccaccgccg atttaaatgc aattcagcaa tctgggttac
     6121 ggcttggtgt ttcaacccac tgctactttg aaataatgcg ggcattggcg gtgaaaccgt
     6181 cttatatcgc ttttggccac gttttcccta ctcaaaccaa agtaatgccg tctcaaccac
     6241 aaggcttaac aaatttagcc aaatatgttg ctctcgttgc accgcttaac attccaactg
     6301 tggcgattgg tggaattaat gagcaaagca ttgaaaatgt aatgcatacc ggtgtcggca
     6361 gtgccgcggt ggtaagtgcc gttacccaag caaaagattg gcaacaagcg gtcaaaaact
     6421 tagcaaaatt tgcaaatgga ggccgtaatg aatagaactc ttagtacgct aaacagtggt
     6481 ttgatttggg cgggagcggg cattagtgcc agtgcaatcg tggttggcac ttggattgcc
     6541 ccacttggct ggcaacaagg cttgctggcg atagtgctag ggcatttatt aggcggcatt
     6601 ttgttttttg ctgccggctt aattggggcg aaaaccggca aaaatgcgat gcaaacggtg
     6661 caaatttcct ttggcagagg ctcggtgttt ttctcccttg ccaatgtgct acagcttgtt
     6721 ggttggacag ccattatgat ctatacaggg gcagagatca gtaatgccct tagccttgcc
     6781 ttatgggaat attcggcttt ctcgctttgg gcaatcgtgc ttgggttgct gattgtgcta
     6841 tggttattta ccggctctaa tcaggtcgga aaattcaagt tagtgacatt gatagcgatg
     6901 tttttgctca ccttatggct aagcattaag gtattgaatg ggcaggaaaa ttttcctgtt
     6961 tcgggtgaaa tgccgtttag caccgcagtg gaattagcaa ctattatgcc tctttcgtgg
     7021 ctacctttgg tatcagacta taccgctaaa gcgaaaaagc cttttgccgc gaccctttcg
     7081 gcgaccatag gctatttgat caccagtgcg tggatgtatg cgttaggtct gggtatggtg
     7141 ctatttaccg ggcaaaccga aattgcccct atgttactaa tgacaggaat gagccttatc
     7201 ggcattatgg tgatgattct ttcgactgtg actaccacgt ttcttgatgc ctattccgcc
     7261 ggtgtcagtg ccggcaatat cacggcaaaa ttcaaagaaa ccccaaccgc cattctagtc
     7321 acaatcatcg gcacgctact ggcaatcagt ttaccggtta cccaatatga aaatttcctg
     7381 ctgctgatag gctcggtatt cgccccgatg attgccgtgc aaattgcgga tttctttgtg
     7441 ttaaaacgcc accaagcaca gcctaatgtt gattgggttg ctgccggatt atggcttgtc
     7501 ggcttcgtgc tataccacct tctctcttac caccaagtgc atttactact cggcttaacc
     7561 attccagtga tgttagtgat ttttctcagc accatttttg tgaggaggtt cacaaaatag
     7621 aaagataagc ggttcaattg gagtgaaaat ttgctaaaat tgagtcgctt gttttaaaca
     7681 atgactgggt agtaacacca caagctcaac ttgcctacca caccattaac ggtaaagccg
     7741 atgaggaacg gttaaatctt ttagttgccc gtgccggcgt aagagtagca aaaggctttg
     7801 ccttgaataa tggttggaat ctgcaacctt atgcggaagt aaacggcatt gctgaaaaag
     7861 gccaatagta cgaaagtgca agtaaaccaa tatcagtttg gagttgccga aaacaagggc
     7921 agagtgcaag gttcacttgg cttgagtgca ggaaacggta atcaccgttt aggtttagag
     7981 gcatcagttg cttcaggtaa gaaactgaaa caaccattta atgtattagt aaattatcgt
     8041 tatcaatggt aatttaagag ggcaggtgaa aacctgccct taaattcaat aattaatcta
     8101 tcttcccaca atttaaacag taaagataca tctgtttcgg atcgttaaaa cgtgaaagag
     8161 tctctagctg ttgttgcggt tgcttcaaca gcggtaaatc aagccaattt gccacgctaa
     8221 attgtaattg agctttgaaa tcacgggcaa gcgtgccaaa taagctgtca tcttgctccg
     8281 caaaccattg taagccgaac tgttcgactt taggttggtt ttccgcttca cgtttttggt
     8341 tgatcaattc agataacgca ttatatgcca cattaaaatt gcccaactca tcaaccaatc
     8401 cgtgttttaa cgcatcagtt cccagccaca cttgcccttg agccacttta tctaccacct
     8461 cttttggcat tttcctgcca cgagaaacca gctctaaaaa acggtcgtag ccgttttcaa
     8521 tcccaatttg cagcacttct gcctgctctt gcggtaggct ttttaaaccg gcttgttgtg
     8581 ctagggcaga agtcgctatg ccgtcttcgc tcacaccgag atttttagcg gttttttcaa
     8641 aagttactgc taaaccgaaa ataccgatag agccggtaag cgtattcggg ctagcaataa
     8701 ttttatcgct ggtagccgca atccaataac cgcccgatgc tgccattccg cccattgaag
     8761 caaccaccgg tttgccggct tgttgaaagg cttccacttc ttggcgaatc agttcagacg
     8821 ccacagcact gccgccgggg ctgttaatgc gtagaattaa gccttccaca tttttgtcat
     8881 ctcgagcttg ttgcagtaat tttaccagcg tctcgctgcc cacattcatt tcgtcacttt
     8941 caccgccagc aatcgcccct tccacattca ctaccgcaat tttcggagca ttcacttctg
     9001 caaagcggtc gtttagttca gtcatataat ctaaaaattc aatctggtta taactgcctt
     9061 cgctgttttt gccaaactgt gcaatcagtt tatcccgact ttcttggctg gacactaact
     9121 gactaaccca tttttgattt aatgccagtt gagcatcatc tcctttagct tgtttatatt
     9181 tttcaatgta attggcaggc gataaatcca gtgcttgcgg ttcaatgttg cggttttgag
     9241 ctagtgttgc cacagtttgt tgccaagtgc cgtttaacca gcctcgggca ttttgtttcg
     9301 cctcctcaga catatcatca cgcataaacg gctcaaccgc cgatttataa gtaccgacac
     9361 ggaaaatatg cggttcagcc tcaattttat cgagcaaggt tttgaaataa gtgttggaat
     9421 aatttaagcc ttttaaatcc accgcaccga ctttattgag ataaatttca tcagcaaagg
     9481 aagcaagata atattgtttt tgcgagtagt cttcgcccac tgcaatcacc ggcttgcccg
     9541 attgtttgaa gttgttgatt tcattgccga taaaatccaa tgagctgaaa tcagcacttt
     9601 gtagcttttg cagatctaac accaagccgg taattttcgg gtcattttta gcgtggctaa
     9661 tcgcttgcac cacatcaaaa gtcgagattt taaacggctc ggaactacct aattccgatt
     9721 gcaccaagcg gtagaaatca gtgaattctt cccgattatc tgctaaataa ccatctaaat
     9781 ttaaacgtaa cgccccttga ttgaacaccg gcttttgcgt gctgccagaa gagctgataa
     9841 atgcgaccac cggcactaat agcaaaataa acagaataaa aaagagatta atgacacact
     9901 ctctaataca acggaagatt cggtaaaatg cttttaaaat cgttaacatc ggaaattcct
     9961 aaaaataaac tcagtcggca cagtataaag caatcgctaa atgaagaaaa tatgctattc
    10021 ttgaacgcaa aaaattaaca aaggaacgct tatgcaaatc ttggatttat tacaccatcg
    10081 ccgttcaaat aaaaaatttg gcgataaagc cccgaatgca gaacaactgg aacaaattct
    10141 aaaagccggc ttgcgagtgc cggatcacgg gcggttaaag ccttatcgct ttgtggtgat
    10201 tgaaaaaagc ggtatgccac agtttggtga atgcttaaag tctgcggtag cagaatttga
    10261 tatgggcgag gaacgcttaa aaaaagcgga aaaattagct aatcaagctc caatgattat
    10321 cggcgtggta gcaacattag acgacagcat cgccaaagtg ccaagttggg aacaaatgat
    10381 taccgcaggc tgtgcaactt atgcgattca gttagcggca aatgcacagg gctttgatac
    10441 ggtttggatc accaataaat ggattaacgg ctctgctctt cgctccgctt ttggttgcca
    10501 agaatctgat aaaatcattg ccttaattat gcttggctca ccggcagagg gcgagcaaat
    10561 tgcattagcc cctgaaagtg aaagtttaga ggggtttgta cgttatctta agtaagcagg
    10621 ttaacagata aaagttagta ataagggcga aaaatatttc gcccttgctt ttatctgttt
    10681 tcgccttact tcttccagcc ttttaacgca tcggcaaagg cattgttacc aaaagcgttg
    10741 cgattgttgc tttgcaagcg gtcatttttc tgcgtatttt tgcaaatttc tgctgaattt
    10801 cgaccgcttg ttggctcttt tttatcggtt ggtttgtcgt ctaaacgcat cgtaagggca
    10861 atacgtttgc gggcagcgtc cacctcaagc actttgactt tcaccacatc accagctttc
    10921 actaccgtgt gcggatcttc aacaaaagag tttgagagca ttgaaatatg caccaagcca
    10981 tcttggtgta cgccaatatc gacaaaagcc ccaaagtttg ccacattggt cactgtgccc
    11041 tccaaaatca taccggcttt gaggtcggta atttcttcca cgccgtccat aaacacggcg
    11101 gttttaaact ctccacgagg gtcacgcccc ggtttttcta actctttgaa aatatcgttc
    11161 accgttggta aaccaaactg ctcatccaca aaatctttgg cgttgagcga gtgaattttg
    11221 ctgttgttac ccattaattc tgcaagtgtt gaggtagttg cctgtaagat tttttctacc
    11281 accgggtaag cttccgggtg aacgcttgag gcatcaaggg catttttccc accgataatt
    11341 cgcataaaac cggcacactg ttcaaaggct ttcggcccta aacgaggcac ttttttcagc
    11401 tctgagcggc tggtaaaacg gccgttttcg tcacggaatg ccacgatatt ttgtgccaat
    11461 gttttggtca ttcccgccac ccgagccagc aacggagcgg aggctgtatt cagatccacg
    11521 cccactgcgt ttacacaatc ttctactacc gcatcgagtt tacgggcaag ttgggattgg
    11581 tttacatcgt gttgatactg cccaacacca atcgcttttg gttcgatttt caccaactcg
    11641 gcaagtggat cttgcaaacg gcgggcaatc gaaaccgctc cccgtaatga aacgtctaaa
    11701 tttggaaact cgttagccgc aaattcagag gcagaataga ccgatgcccc agcctcactc
    11761 accaccaccg tttgcggttt attctctttg atttctttaa tcaccgcttt ggcaaaacgt
    11821 tcggtttcac gagaggccgt accgttacca atcgcaatca gttccacatt gtgttgtttg
    11881 attaagctga aaatcgcaag ctgtgcctcc gcctctcgcc cagtgtgagg gtaaattgtg
    11941 gcggtatcca gcaatttacc ggtgttatcc accaccgcca ctttcacgcc ggtacgcaag
    12001 cccgggtcta gccccattgt atttctcgca ccggcagggg ctgccattaa taatgccgag
    12061 agattgcggg caaacacatc aatcgcctct tcttcagctt tttcacacag ggttgccatt
    12121 aattcggttt ctaaatgcag agctgctttg attttccacg tccaagcaat cacttgctca
    12181 cgccatttat ctgctggttg attattaaaa atcacgccca aatgctcacg aataatttct
    12241 tcacaatggc tggattttgt gccttcttct gcagtcggat cggcatttaa tgaaagtgat
    12301 aacacccctt catttcgccc acggaacatc gccaaagcac ggtgggaagg cacgctgtta
    12361 aacggctcgc tatgagcaaa ataatcacgg aatttctcgc cctcttcctc tttgccgtca
    12421 atcactttcg attccaacgt ggcgtaagcg gtcaaatatt ggcgaagttt tgcaagtagc
    12481 tcagcatctt cgctaaaacg ctccattaaa atatatcttg ccccgtctaa tgcggccttg
    12541 gtatccgcaa cgcctttttc cgcatcaaca aagtttgccg ctaaggtttc aggatcttgt
    12601 ttcggatcat tccataaact gtccgccaat ggctctaacc ctgcttcaat cgcaatttgc
    12661 cctctggtgc gacgttttgg tttatacggc aaatagagat cttccagctc ggtcttgctt
    12721 tcactgctta gaattttggc ttttaattca tcggttaatt tgccttgttc ttcaatcgac
    12781 ttcaaaatgg tttggcggcg ttcgtccatt tcacgcaaat aaattaagcg ggtttcaaaa
    12841 tggcgaagtt gggtgtcgtc tagcccgccg gtcacttctt tacggtaacg agcaataaat
    12901 ggaatggtat tgccctcacc taatagcgtg atggctgcaa gaatttggtg tgagccaacg
    12961 ttgagttcgc cggcaataat ttggctgatt tttagattta agtcagtcat tagttttcct
    13021 tcaataaatt tgctcgaggt ttatccaatt tctcaagctc ggtcaatgtt tcggcaattt
    13081 tttgcagatt cggctctttt ttcgcacata acaccatatt ttctaagcta tccgcttggt
    13141 gatagtaggg tgctttgctt ttgacagcct gctcaaattg ctgataagcc tgttgaaatt
    13201 gaccctgttt acataaaaaa gtgccgtaat tattcagcac atcagggcgg ttttgactca
    13261 atttcagtgc cgtttggtag gctttttcgg cattttcagc atcacctgtt tgttggtaat
    13321 aataggcaag caccgaataa gggaggtaat ctttttcatc gtgagccaag gctttatcaa
    13381 tattctgctt agcttttggg aaatcatttt gctccagata agctaaagcc aaattaatac
    13441 gggcttttac cgcttccgag cggttaaatt cgacttcaga ggaagaaggg ggaagagaag
    13501 aacaagccgc taataaaaaa atcagaatac aagcggtcat ttttggaaaa aattttgcaa
    13561 acataacgtt ctcctacaac aaagggctta attttactgt tccatcctcg ctaagactag
    13621 cgattttttg cgaagaagaa aaatttttcg ttttcatttt tcgacgcaga tcgcaaaaat
    13681 aataatgggg tgttgtgcta gggtaaatgg taggaataca ctctctattt aatataagaa
    13741 tttcattgaa aaaacttata aaacttataa aatagaggca aaaatgaaaa tagtggtatt
    13801 ccagcgtaaa gccttaaagc aattacgaaa aatcccaact ggtgcagaaa ttcgccgaaa
    13861 atgtgatgat ttagcttact ttccctactg tgccaatatt aaggcattaa caaatcatca
    13921 atatgattat cgctttcggg tcggaaatta ccgtattttt ttcaatattg aaggcgaaac
    13981 gatgaatatt gtgtctatcg aagaggttaa aaaacgagat gaaagaactt actaatattc
    14041 aatatttaaa taatgaagaa ggaaaacctg cctttgccgt acttccgata gcaacacttg
    14101 aatggcttaa gcagaaagca aatattaaaa ccgcaataga gaccggtatt ccatctgctg
    14161 ttgctggaat tgcattagat aataactact cagctctgcg tgcttggcgg gaatatttag
    14221 gtttaactca agaagaggtg gcacaacgct tggggatttc gcaatcagct tatagccaac
    14281 acgaaaatgc aaaaaatcta cgaaaaacga cccgcataaa aattgcctat gcgttgggtt
    14341 taaatgaaga gcaattagat ttctaataac aaaaaggcag gaacctctgc cttttcacta
    14401 ttcagattaa tgggttttaa ccgcaatacc ttgcccgaat ttacgttttt caagggtgcg
    14461 tttggtgcgg tcaatcacat cgccagcaag ctgtccgcaa gcggcatcaa tatcatcacc
    14521 tcgtgtttta cgcactgtta ccgtgaaacc gtactccatc aaggtttttt ggaaacgatc
    14581 tacccgagag ttagagcttt taccataagg agcttctggg aacgggttcc acggaatcaa
    14641 gttaatttta cacggcgtgt tttttaatac ttcagcaagt tggtgggcgt ggtttgtgct
    14701 gtcattgaca tgatctaaca tcacatattc aatcgtgacc ttgccgtggt tggcgttaga
    14761 aacttcacgg tatttattca ccgaatccat caacattttg atgttgtact ttttattaat
    14821 cggcactaat tcatcacgca gttcatcgtt cggagcgtga agtgaaattg ccaacgccac
    14881 atcaatttgc tcacgcattt tgtctaatgc cggcaccaca cccgaagtgg aaagcgtgac
    14941 acgacgttta gataagccgt aagcaaaatc atctaacatg atttccattg ccggaatcac
    15001 gttattcata ttcagcaatg gttcacccat tcccatcatg accacattgg taatcgggcg
    15061 aacaccggtc acgccaaaat tgccgataat tttagaagca cgccacactt gcccgataat
    15121 ttccgccacg cttaagttac ggttaaagcc ttgttgagcg gttgagcaga aggtacaagc
    15181 caaggcacag cctacttgtg aagaaacaca cagggttgca cggtcatctt caggaatata
    15241 taccgtctcg atttgctgat cgcccacttg cattgcccat ttaatcgtac cgtctgcaga
    15301 acgttgttct accgccactt caggggcttt aatttcggca atacgcttta atttttcacg
    15361 caatacttta ttgatattgc tcatattatc gaaattttct tcgccaaaat ggtagatcca
    15421 tttcattagc tggtcggcac ggaaaggttt ttcccccatt tctgcaaaca gttctcgcat
    15481 ttcttgacga ttaagattta ataaattgat tttttctttt ggttgttcag cagacccaca
    15541 gcctgcattg gtaatcagtt ctgacataaa gttgaaagcc tcgttattac acggattacg
    15601 gcaaaaggtt agggcaaatg cccttatttt gcgattggat tttaaagcgt gcaattttac
    15661 tggctcttga gggattaggc tagtaatttt taatcaaaag agttgaattg cctgagtaaa
    15721 cttatcaaga ataaccttat aaaaacaaga ctatttacat cattcccaat gttctataga
    15781 atagctttcg ataattctca ttctcaataa caaaaggagg ctaaaaatga aactatcaac
    15841 aattaaaaaa gcattggtat taacctttgg tttaagtgca gcgatggcaa tggcagagcc
    15901 gtttaaagta gttaccactt ttaccgtgat tcaagatatt gcacaaaatg tcgccggcga
    15961 taaagccact gtggaatcca ttactaaacc gggtgctgaa attcacgatt atcaaccaac
    16021 accaaaagac attgtaaaag ctcaaaaggc agacttagtg ttatggaacg gtatgaacct
    16081 tgagcgttgg tttgaacgtt tctttgaaaa tgtaaaaggt aaaccggcgg ttgtcgtcac
    16141 cgaaggcatc accccaatgc cgattaccga aggtgaatat aaaaatctac caaatccgca
    16201 cgcttggatg tccaccgata acgcattaat ttacattgaa aatattcgtg cggctttagt
    16261 aaaatatgac ccacaaaacg cagacaccta taatgccaat gcaaaagcct atgctgaaaa
    16321 agtaaaaggt attgctgagc cactccgcca acgtttagct tttattcctg agcagcaacg
    16381 ttggttagta accagtgaag gggcatttag ctatttagcg aaagactaca acttaaaaga
    16441 actttattta tgggcaatca atgcggaaga gcaaggttcg ccaaaacaag tgaaaaaagt
    16501 gattgatggt gtaaaagcca acaaaatccc tgttgtgttt agcgaaagta ccgtttccga
    16561 caaaccggca aaacaagtgg cgaaagaaac cggtgcatta tacggtggcg taatttatgt
    16621 ggattcactt tcagagaaag atggtccggt tccaacctat ttagatttgc ttaaagtgac
    16681 tatcggcacc attgtcgaag ggttcgaacg aagcaaaaaa taataagatt tagcaatgac
    16741 aactgtttca gcctccattt ccgtcgaaaa tttatcggtc cgttataata acggacatat
    16801 cgctttgcaa gatgtctcgt ttcatctgga aaacggcaca atttgtgcat taatcggcgt
    16861 gaatggaggt ggaaaatcca ctctgtttaa aagtttaatg gggctggtta agccattaac
    16921 cggctctgtt aagctgagtc agctcccgat tgctaaagcc ctcaaacaaa atttggtttc
    16981 ctatgtgcca caaagtgaag aagtggactg gcaatttcca gtttcggttt acgatgtggt
    17041 aatgatgggg cgatacggct atatgaattt tctacgccgc ccaagccaaa ccgataagct
    17101 caaagtagag caagcaatgc aacgccttga tgttttacat ctcaaagaca ggcaaatcgg
    17161 cgaactttcc ggcgggcaaa aaaaacgggt atttttagcc cgtgccttag ctcaagaaag
    17221 taaaatcatc ttacttgatg agcctttcac cggtgtggat gttaaaaccg aaaatgcgat
    17281 tgttgagcta cttaaacagc ttaaaaatga ggggcatttg attttagttt ccacccacaa
    17341 ccttgccagc gtaccaagct tttgcgatca ggttttgatg gtcaatcgca cgctactggc
    17401 aaaaggtaaa acggaagaaa tctttaataa tcaaaattta gaacgggtgt tcggcggttt
    17461 attgcattat caaaagtagt gtttcagcaa caaatcacaa acaaataggg aggcaaatgc
    17521 ctccctattt ttgtatcaat gaatcttaga atatgcaaaa ctgaggaaaa aaatggccgc
    17581 ttgcacgaga ataatcgtcg gccctgttgc ggcatcaata tggtagctaa gcaacgtgcc
    17641 gaataccgat gaaaatatcg caacgcctaa ggcaatcagt aacatactat caaaccgctt
    17701 agtcagcagg taagcagtga tccccggggt aatcaacatt gccaccacta aaatcacgcc
    17761 caccacttgc attgcactga taatagttaa agcaagcaag gaaagtaaac cataatgcaa
    17821 taatctaacc ggtaagcctg ctactttggc ttgattaaca tcaaagcaat agagcaagaa
    17881 gtctttgcgt ttcgccacca tcaccacaaa ggtaaagagg cttatgagta aagtctgaag
    17941 caaatcgctt ttggttacgc ctaatagatt accaaataaa atatgggtta aatgctcacc
    18001 ggtattaaag gcggtaaaca gcaagatccc aaaggcaaac atacctgaaa acacaatccc
    18061 cattaccgtg tcttctttca agcgactatt ttcttttaaa tagcccaccg ataaggcaca
    18121 gcctaatcct gaaaaaaacg cccctattga gagtggtaac ccggcaagtg aggaaatcac
    18181 cacaccgggc agaacagcgt gcgaaattgc atcgcccatt aaagaccagc ctttcagcac
    18241 cagatagcaa gataaaaccg cactcacgcc agcaactaaa attgcggtaa ttaacgcaat
    18301 ttgcataaat tcaaattgca acggctctaa aatccaatta agcattttga acctccacac
    18361 ggtgcaattt ccgcttttga gtaatcaagc catatttagg agcaaagcag aatgcgaata
    18421 agaaaattaa ggtttgtaag cacacaatta ccgcaccggt tgcaccgtct aaaaagtagc
    18481 ttaaatatgc cccaatccct gatgtcagcg tgccgataag cattgcgatc agcactaatc
    18541 tagggaaacg gtcggtaagt aaataagcag ttgctcccgg cgtgacgacc atcgcaataa
    18601 ccaaaattgc cccaaccgtt tgcagagcca ctactacaca ggcacttaat aaggtaaaga
    18661 aaatcacttt atagcgtaat ggcgaaagcc cgactgacaa tgcgtggtgt tcgtcaaaaa
    18721 agacgagtag caaatccttc caaaatagga ttaaacccag taacgaaatc gcaataatca
    18781 gtaccacctg ccacaagtca tcatcagcaa tgcctaaaat atttcccatt acaatcgaat
    18841 taacatcaac cgatgttgga ttgagggaaa caataaacat accaagcgca aaaaaagtcg
    18901 tgaaaataaa gccgataacc gcatcttctt taattttcgt caggcttttt acccaaagaa
    18961 tcgataatgc cgccaaaatc ccggaaaaaa acgcaccaaa ggcgtagggc aattttagtg
    19021 cataagcgat ggcaacacct ggcactacag cgtgtgataa ggcatcacca atcaaagacc
    19081 agccttttaa catcaaaaag gcggaaagaa aagcacaaac taaccccacg cccatactga
    19141 caaaaatcgc tttttgcata tagttgtagg taaaaggctc taataaaaga tcaagcataa
    19201 aatcctaaca agttgttgat aatagttcgc atatactatc atataaactc cttttcttgt
    19261 atggattaaa cttaaatatc tactttaaat tgataaggat caggatagta ataacgaaaa
    19321 ccaagctctt ggcaaatttt gtctgctttt atcagcctta caagcggttg attttcttca
    19381 gaaaaatgca aatccgctaa cccaaaacgt tttgccattt cactataata atctttacgg
    19441 cttgggtgct gttcggcaca taaatgaaaa atacgctgcc cgttcggctg ctccaacagc
    19501 aatgaaatgg ctgcaataca gtcctctaaa tgcactaaat tgaccggctg ccctgctcca
    19561 ctcaagttct gttttcccgc caaataaaaa accgggtgcc gttttttgcc caccaagcca
    19621 gctaaacgca aaatatcaca atgaattggc tggctcagca accaattttc catttttact
    19681 aataggttag cagaatcaac cactgcattt tcatcaaaaa cgcccgattt cattggcaaa
    19741 accgaagtcg agctggtgaa aaccagatgt ttcaagccct tttctattgc aagcgaaact
    19801 aatgtttgaa taccgcaacc gtaattttca gggcgaattt ggctaagggg caaggcaatc
    19861 actaacgcat cagcagcaag taattgctcg atttcgcttg tcactgctaa cgcatttaaa
    19921 tctagaggat aacattctat cgctaattct ccgaccgttc gcttagtacc tgcaacacgc
    19981 cagcccttat tttgtaatgc ttcagctaaa ggtagtccga gccagccaag ccctaaaatg
    20041 gtaatttttt tcatcattta cgtttctcaa gattaaaatt ggaatgaggg gaaattcagg
    20101 tacaaaaaaa gcacctcgtg gtgctatcta ttttatttct a
//
LOCUS       DANLRW010000038        19953 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.038, whole genome shotgun sequence.
ACCESSION   DANLRW010000038 DANLRW010000000
VERSION     DANLRW010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19953
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.038"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..389)
                     /locus_tag="PXA71_001162"
     CDS             complement(<1..389)
                     /locus_tag="PXA71_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5105283.1"
                     /translation="MSIKKVTLASLILLGLTACSSGGSGSSSNNVAKPNTKPQTTQQQ
                     TDKAAAEKAAKDKAAKEKAEAERLAAEKAAKEKAEAERLAAEKAAKEKAEAERLAAEK
                     AAKEKAEAERLAAEKAAKEKAEAERLAA"
     gene            592..2046
                     /locus_tag="PXA71_001163"
     CDS             592..2046
                     /locus_tag="PXA71_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-histidine dipeptidase"
                     /protein_id="HDL5105284.1"
                     /translation="MSEISTLAPQLLWQWFDKACAIPHPSYHENELAEFIVNWAKSKN
                     FFVERDEVGNVLIRKPATKGMENRQTVALQAHLDMVPQANTGTVHDFTKDPIQPYIDG
                     EWVKAKGTTLGADNGIGLASCLAVLDSDDLAHPTIEVLLTMTEEAGMEGAIGLRPNWL
                     TADIMINTDTEENGEIYIGCAGGENVNVTLPIFLVPHQQDSAVTVTLKGLNGGHSGCD
                     IHTTRANAIKVFARILEQAHNEVEFQIAEIQGGSVRNAIPREAHATLVFSAKNQQKLT
                     ACLSQTAEQVKAELKIAEPNFQFLIEEAQLPEQAFDLASTARVIHFLNVMPNGVVRNS
                     DVVENVVETSLSIGVLNTEASEVKATILARSLIEGGKEEIRSKIRSLTALVGAEVEFS
                     GNYPGWEPNPNSKITPLTKAIYDEILGYESQIKVIHAGLECGLINKIYPNMDFVSIGP
                     TILNAHSPDEKVHIPAVEIYWKLLTKLLEQAPEK"
     gene            complement(2121..3410)
                     /locus_tag="PXA71_001164"
     CDS             complement(2121..3410)
                     /locus_tag="PXA71_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5105285.1"
                     /translation="MDIRQKIAHNKMTSFQWLVVGLTVLLNMLDGFDLMALAFTAKSI
                     REELQLDGAAIGSLMSAGLFGMAIGSLFLSPLADKFGRRPLLLIGTGLATLGMLLTYF
                     ATSAFEIGVWRVLTGLGVAAILTGTNVLVSEYSSQKWRGLAIAIYASGFGIGAMLGGM
                     SAVLLQGEYGWRAVFLVGSILTGAVFVLLFFVLPESVEFLISKHPVNAKARLNQIAVK
                     LGLGNGWELPEIEAKSKSKVAITRLFEPEYRRNTLLIWLAFIAISASFYFISSWTPAL
                     LEEAGMPKTQSQTVGMAISVGGTIGSLIFGFLVSRWAAKHILQAFSILAASAVVAFVF
                     AGNLGLAITLAILVGGLINGCITGLYTINPTLYAPDFRSTGVGTAIGVGRLGSIVSPT
                     LAGILLDAGWKKNELYLGAAVVLLIAAFTVHFLKQRK"
     gene            complement(3614..3949)
                     /locus_tag="PXA71_001165"
     CDS             complement(3614..3949)
                     /locus_tag="PXA71_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HDL5105286.1"
                     /translation="MVSEQRQNPEEQKSEEQKINVEVLYAYPDKYFLKKLQVPQNATI
                     QTIILLSGVLEKYTEIDLRENKVGIFSRPAKLNETVEEGDRIEIYRPLIADPKEIRRK
                     RAAEQAEKK"
     gene            complement(3939..4373)
                     /locus_tag="PXA71_001166"
     CDS             complement(3939..4373)
                     /locus_tag="PXA71_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RatA family
                     toxin"
                     /protein_id="HDL5105287.1"
                     /translation="MPIVNQSALVPYSAEQMYQLVNQYEKYPEFLSGCVSTKTLSTGE
                     NELKAELHIQKLGISQTFSTHNKMTPPYKIEMALIEGPFRHLHGAWTFTPFDEQSCKI
                     ALQLNFEFSSPIVAMVFGKVFNELTLKMVNAFKQRAKEVYGV"
     gene            complement(4428..5483)
                     /gene="modC"
                     /locus_tag="PXA71_001167"
     CDS             complement(4428..5483)
                     /gene="modC"
                     /locus_tag="PXA71_001167"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HDL5105288.1"
                     /translation="MLKLKLLQQLGNLTLNVNLDLPNKGITAIFGRSGAGKSSLINLI
                     AGLSTAQAGFIELNGQVLFDSQNGINLPPEKRNIGYVFQEHRLFPHYSVEKNLKYGYK
                     RSDSADFLQIVELLGIAPLLNRYPASLSGGEKQRVAIGRALLSSPNILLMDEPLSALD
                     LPRKQELLDYLDKLSARLEIPILYVSHSLEEVVRLADHLVLLENGKVTAFDTLSAVWH
                     SSAFSAWQPNHQRISLLELPVEETLPHYNMLGLSLNAQRLWVNQLPRHQIGEKLRVTI
                     ASKEVSISLQKPTQSSIRNVLKGNVRKIETHLDRVDLAIQVENQQIWSTISLWSFNEL
                     AIQPEQEVYLQIKSVSL"
     gene            complement(5470..6162)
                     /gene="modB"
                     /locus_tag="PXA71_001168"
     CDS             complement(5470..6162)
                     /gene="modB"
                     /locus_tag="PXA71_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDL5105289.1"
                     /translation="MLNFTPQELNAIVLSLKVASIAVVLALPLAVWVAWLLARKQFWG
                     KNLLNGIMHLPLVLPPVVIGYLLLISMAKRGVIGQYLWEWFHFSLSFSWKGAVLASMV
                     MAFPLMVRSIRLAFEAVDPKLEQAARTLGAIPLKVFFTLTLPLSFSGIIAGGVLGFAR
                     SLGEFGATITFVSNIPNQTQTIPAALFTFIETPDGEMAAARLCLVAILISLIALFCSE
                     WLAERQKRYAQT"
     gene            complement(6346..7101)
                     /gene="modA"
                     /locus_tag="PXA71_001169"
     CDS             complement(6346..7101)
                     /gene="modA"
                     /locus_tag="PXA71_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5105290.1"
                     /translation="MKALKKLAITMALTLSGTAFSQEITVFAAASMTNVLQDIQQDFE
                     KAYPQDKITFSFASSSVLAKQIEQDAPADIFISADQKWMDYVAEKQPEKVKHRRNLVR
                     NELVLIAPTESNIEPKAIQAVDFAKELANSYLSVGDPNHVPAGKYAKKALSHYQLWES
                     VEPRLARAKNVRDALSFVERGESPLGIVYSTDAKVSNKVKVVAVFPPESYGEIVYPAA
                     AVSEKASAATFLDFLKTPKAKAKFEAAGFYPVN"
     gene            complement(7122..7883)
                     /locus_tag="PXA71_001170"
     CDS             complement(7122..7883)
                     /locus_tag="PXA71_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5105291.1"
                     /translation="MNLIGFYTLAYKECRRILRIWRQTLVPPVITTTLYFLIFGTLIG
                     GRIGEMNGVGYTQFIAPGLIMMTAITASYVNTASSFFLSKFTRDFEEMLISPLSTHNI
                     IWGYVTGSILRAGLAATLVMCVAMVFVSFEIYSVAIIVLTLLLTIIAFALGGVINAVF
                     ARSFDDVGLIPTFVLTPLTYLGGVFYSISLLPEFWQTVSKFNPIVYMINGLRYGFLGI
                     SDVPLGYTFAVLTSLCIGLYIIAYSLIQRGVGLRS"
     gene            complement(7885..8793)
                     /locus_tag="PXA71_001171"
     CDS             complement(7885..8793)
                     /locus_tag="PXA71_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5105292.1"
                     /translation="MKALELIDLVKTYPTGVKAVKGINLVVEQGDFYALLGHNGAGKS
                     TTIGIISSLVNKTSGSVKVFGYDLDTQKVELKHQIGLVPQEFNFNQFEKVIDVLVQQA
                     GFYGIPRSEALVRAEKWLKLLDLWEKRTHLTRELSGGMKRRVMIARALMHNPKLLILD
                     EPTAGVDIELRRSLWDFLRDLNNQGTTIILTTHYLEEAETLCRHIGIIQHGELIENTS
                     MKALLAKLESEVFVLDLQNSEQNQPLVIQNYPHKWLDENTLEVNVKRQQGLTNLFSQI
                     SAQGAEVLSMRNKSNRLEELFINMAQ"
     gene            complement(8799..10856)
                     /gene="dnaX"
                     /locus_tag="PXA71_001172"
     CDS             complement(8799..10856)
                     /gene="dnaX"
                     /locus_tag="PXA71_001172"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDL5105293.1"
                     /translation="MSYQVLARKWRPQRFSEVVGQQHVLSALENSLREDRLHHAYLFS
                     GTRGVGKTSIARLFAKGLNCVNGITAEPCGECANCKAIEEGHFIDLIEIDAASRTKVE
                     DTRELLDNVQYKPTVGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQ
                     KLPITILSRCMQFHLRALEQSQIARHLEFILNAENIPFEPLALEKLAKAAQGSIRDSL
                     SLTDQAIAMSNANITLAIVSQMLGLIDDNQPLELVQATAQADGEKAMAIIEQIAAKGV
                     DWQQLLSDVAEVLHKIAMLQLVKTPTTEETLVHFLAKQIPPEDVQFFYQLILNSKKEL
                     PFAPEQRAGVEMAILRALAFHPKQAEKIATVAVEKVTQPNHSVSAVTTAKPQNQISQL
                     RENFEQNQQKTVTVANTTTAVESIAQPPQAVDTAISPSAPATLSPAMAALEARKKLQA
                     QQANLAQTEKKKPELKAPQVIAKKSANQTASLQERFISLAENQHKAVLQVSKKTESAP
                     KSVEDEDYRWTWLNPELENQADSAKPSDIKQAILQERTPELVAKTIHLSCQQDKWCDI
                     ANSLNLGGFSRQIALNSYLAEQNEQHLALVLKPNMAHLDNPESRKNLEAALAEKGYSY
                     ELTIGDNSEQQTPLEIRRAIFKQLTEAAKSALLNDEKLMLLRNAFDAQIDESTIRAVA
                     ETE"
     gene            complement(10947..11486)
                     /gene="apt"
                     /locus_tag="PXA71_001173"
     CDS             complement(10947..11486)
                     /gene="apt"
                     /locus_tag="PXA71_001173"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDL5105294.1"
                     /translation="MNQLDLIKSSIKSIPDYPKAGIIFRDITSLLEVPTAFQATIDAI
                     VAEFKDKGITKIVGTESRGFIFGAPVALALGVPFVLVRKPKKLPREVISQSYTLEYGE
                     DTLEIHKDAVSANDNVLVIDDLLATGGTIDATAKLIRRLGGNVEHAAFVIWLPELGGK
                     ERLEKEGVKSFSLVSFEGH"
     gene            complement(11614..12564)
                     /gene="lpxM"
                     /locus_tag="PXA71_001174"
                     /gene_synonym="msbB"
     CDS             complement(11614..12564)
                     /gene="lpxM"
                     /locus_tag="PXA71_001174"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249087.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HDL5105295.1"
                     /translation="MTRITAQDGYTHKFLWSFLHPKYWGVWLGVLGLVILAYVPVRIR
                     DKLSAFVGKMAYRYLKQKNKKGYHRAKVNLRYCFPDWSEKKREEVVEKMFITVAQTML
                     AIGETAIRPASYLQKRCEFTGFENVVKAKESGKNVIMLVPHTWSIDMAGVAMFSLGYP
                     MTSMYNPHRNALVDWLWNITRERLGGRMHTRQNGIKAFLADVRKGDVGYFLPDEDFGE
                     ELSVYADFFATEKATLPGLNKMARVANAEVIPMFSIYNAEKAKYEMEILPPLEFSGDP
                     IQSAREMNRVIEYFVEKNPEQYVWILRLLKTRRNREDIYL"
     gene            complement(13005..13688)
                     /locus_tag="PXA71_001175"
     CDS             complement(13005..13688)
                     /locus_tag="PXA71_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HDL5105296.1"
                     /translation="MEREQQIPVTNIDVAPKQSSVWKTIFADGVWKNNGALVQLLGLC
                     PLLAVSNSVTNALGLGLATMFVLICTNITVSLFRKITPHDIRIPIYVMVIATVVTAVQ
                     LLMNAFAFPVYQSLGIFIPLIVTNCIVIGRAEAYASKNEVKFSAFDGFSMGLGMTFSL
                     VVLGALREIIGNGTLFSGLDLLLGDWAKALRIDVLHIDSGLLLAILPPGAFIGLGVIL
                     AVKNIIDKR"
     gene            complement(13697..14329)
                     /gene="rsxG"
                     /locus_tag="PXA71_001176"
     CDS             complement(13697..14329)
                     /gene="rsxG"
                     /locus_tag="PXA71_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HDL5105297.1"
                     /translation="MNTSKITLNYALILGFIALLCTAVSTGVYLLTKGKIDDVTAMQQ
                     RKLLEEVVPKSHFDNDVLATCKLVQLENAPYLNRIYVAKKSENLTAYLVQGTAPDGYS
                     GDIVLLMGIEPNGNILGVRTLEHKETPGLGDKIETRVSDWILSFTNQLFSLENEADWN
                     VKKDGGKFDQFTGATITPRAVVNHIRQSAKWVVTELAQNPTMFNQFKACK"
     gene            complement(14329..15384)
                     /gene="rsxD"
                     /locus_tag="PXA71_001177"
     CDS             complement(14329..15384)
                     /gene="rsxD"
                     /locus_tag="PXA71_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HDL5105298.1"
                     /translation="MFKMVSSPHTHSSNLTANFMLWVIAMMLPAFGVQLYYFGYGVLI
                     QTLLAVSLAIVIEIGIAKLRKKTTAFYLADLSGILTALILAMSIPPYAPYWLVLIGVI
                     VALLLAKHSYGGLGQNLFNPAMVGYALLLVSFPVQMTAWIVPIELLSEPPTFRDAISL
                     IFYGVTSDGFSIHQLVNSVDGIAQATPLDSMKSSLAKSGFDAVMNTPIFNGLFATGWL
                     QLNLAFLFGGLVLIYKRIIHWQIPVAMLATFAFFSGFTELFSQQSHLHFVSHFFSGAM
                     MFGAFFIATDPVTASITPRGKLIFGGLVGLLVYLIRYYGNYPDAIAFSVLLANICVPL
                     IDHYTQPRLYGTKLDNR"
     gene            complement(15430..16065)
                     /locus_tag="PXA71_001178"
     CDS             complement(15430..16065)
                     /locus_tag="PXA71_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HDL5105299.1"
                     /translation="MFSELIPALPWSFLFIQDLIGTIVFAISGAIAARQHKMDIFGMF
                     ILAFVTGVGGGTLRDMMIGSTPVFWMKQPIYVLMITLAVVITAIFRNQISRKSWQTGL
                     LVFDAIGLGVFTVIGVQKGLDFGLHPLICVALGGVTGCFGGLIRDILRNEVPIILQKE
                     VYVTASLIGGVIFVAANSVGLESDWVYLATVFTVIIIRLLAIRFNLNLPRL"
     gene            complement(16058..18352)
                     /gene="rsxC"
                     /locus_tag="PXA71_001179"
     CDS             complement(16058..18352)
                     /gene="rsxC"
                     /locus_tag="PXA71_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HDL5105300.1"
                     /translation="MSNPNLVIERIRQNKETGKLWDFPGGIHPMENKSQSNSKPIRTL
                     NLPKFFYVPLVQHSGWAGELLVKVGDVVLKGQPLTKGDHFRQLPVHSPTSGRVIGIEP
                     YVSAHASGLPEITVIIETDGKDKWVERQPIEDFLSLTSDQIIQKVYQYGIAGLGGAVF
                     PTATKLSLADKRCKLLVINGAECEPYITCDDRLMQDFTADLIEGIRILRYVLRPEEVV
                     IAIEDNKPHAIQALETALKGSNDMFVRAIPTKYPSGASDQLIQVLTGLEIPAGKRTIE
                     MGIVMHNVGTAFAVKRAIIDDEPLIERVVTLTGDKIRNKGNVWARLGTPIQHLLEQVD
                     YQADKRFPVFLGGPMMGFILPALQAPITKTANCLIAPDHFEYAPPEPERSCIRCSSCS
                     DACPVGLLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCPSYIPLIQYFRQEKAK
                     IEEIEEKARKAEEAKIRFEAREARLQKERDARTARISQAAEKRREEVANAGGVDPVKA
                     ALERLKAKKAVETVQEIPAEVQVKPNGEPDNSDLMAQRRARRLAKQAEQAVEKSENVT
                     NALIGANNDLPLQSMNETASDKSVGANNYSPEAESEDPRKAAVAAALARAKAKKQAQQ
                     AVEKSENITNAVIGVNNDLPLQSMNETVSDKSVGANNHSPETESEDPRKAAVAAAIAR
                     AKAKKQAQQAVEKPEDIANAVIGVNNDLPLQSMNETTSDKSVGANNHSPKTESEDPRK
                     AAVAAAIARAKAKKAAQQEKSNNV"
     gene            complement(18339..18956)
                     /gene="rsxB"
                     /locus_tag="PXA71_001180"
     CDS             complement(18339..18956)
                     /gene="rsxB"
                     /locus_tag="PXA71_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HDL5105301.1"
                     /translation="MLDLPIIAYILIAIAVIALIFGAVLGYSSIKLKVESDPIVDQID
                     ALLPQSQCGQCGYPGCKPYAEAIANGDVITKCVPGGQPLVVNLAELLGVEVPPMEGMA
                     EPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNKAMHTIIPDLCTGCELCVAPCPTNC
                     IEMRPIKPTTQSWNWKFDQDLIIPIVNTTELQRKLVTGGGKNEQS"
     gene            complement(18956..19537)
                     /gene="rsxA"
                     /locus_tag="PXA71_001181"
     CDS             complement(18956..19537)
                     /gene="rsxA"
                     /locus_tag="PXA71_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HDL5105302.1"
                     /translation="MVDYILLVISTALINNFVLVKFLGLCPFMGVSKKVETAIGMGLA
                     TTFVLTVASLSAYLMETYLLEPLNAQFLRTLVFILVIAVIVQLTEMIVHKTSPTLYRL
                     LGIYLPLITTNCAVLGVALLNVNLANNLVESVLYGFGAAAGFSLVLVLFAALRERLAA
                     ADVPRPFQGASIALITAGLMSLAFMGFTGLVKL"
BASE COUNT         5662 a         4546 c         4160 g         5585 t
ORIGIN      
        1 gccgctaaac gttctgcttc cgctttctct ttcgccgctt tttccgccgc taaacgttct
       61 gcttcggctt tttctttcgc tgctttttcc gccgctaaac gttccgcttc ggctttttct
      121 ttcgctgctt tttccgccgc taaacgttct gcttccgctt tctctttagc tgctttttct
      181 gctgctaaac gttctgcttc tgctttctct ttcgctgcct tgtcttttgc tgctttttct
      241 gctgccgctt tatcggtttg ttgctgagta gtttgcggtt tagtattcgg ttttgccaca
      301 ttgtttgagc tactgcccga accaccacta ctacacgccg ttaaacccaa taaaatcaaa
      361 ctggctaaag ttactttttt gatagacata aaatgttcct tttgtaagat aaacaaaaat
      421 agatgtgtat aaaacacacg catattgtac aaaaaaaaaa caactcgtca tcaagtactt
      481 tttaagattt ttttgttaaa tttctcctaa atattctaca atgtcagagg tctatatcag
      541 cttgaataca agcggttatt ttttcttaaa attttacaaa aggggcttat tatgtctgaa
      601 atctcaacgc tcgcaccgca gctactttgg cagtggtttg ataaagcctg tgctattccg
      661 cacccgtctt accacgaaaa tgaactggct gaatttattg tgaattgggc aaaatcgaaa
      721 aatttctttg ttgaacgtga tgaagtgggt aatgtgttaa tccgtaaacc ggcaactaaa
      781 ggtatggaaa accgccaaac tgtcgctctg caagcccatc ttgatatggt gccacaagcc
      841 aataccggca cggttcacga tttcactaaa gatccgattc agccttatat tgacggcgaa
      901 tgggtaaaag ccaaaggcac aacattgggg gcagataacg gcattggatt ggcttcgtgc
      961 ttggcggtgt tggatagcga tgatttagcc cacccaacca ttgaagtgtt gctcacaatg
     1021 accgaagaag ccggtatgga aggggcgatt ggtttacgcc cgaactggct aaccgccgat
     1081 attatgatta acaccgacac cgaagaaaac ggggaaattt acatcggctg tgcaggtggg
     1141 gaaaatgtga atgtgacact gccaattttc ttggtgcctc atcagcaaga tagtgcagta
     1201 accgttacgc ttaaaggcct aaacggcggg cattcgggct gtgatattca caccacccga
     1261 gcgaatgcga ttaaagtgtt cgcccgcatt ttggaacaag cccacaacga agtggaattc
     1321 caaattgcag aaattcaagg cggttcggtg cggaatgcca ttccacgaga agcccacgca
     1381 accttggttt tctctgcaaa aaatcagcaa aaattaaccg cttgtttaag ccaaaccgcc
     1441 gaacaagtaa aagcagaact caaaattgcc gagccaaact tccaattttt aattgaagaa
     1501 gctcaactgc ctgagcaagc ctttgacctt gccagcactg ctcgagtaat ccatttctta
     1561 aatgtgatgc caaatggtgt ggtgcgtaat agcgatgtgg tggaaaatgt ggtggaaacc
     1621 tcactcagta ttggtgtgct taacaccgaa gcgagtgagg tgaaagcgac cattcttgcc
     1681 cgctcattaa ttgagggcgg aaaagaggaa attcgcagta aaatccgctc attaaccgca
     1741 ttagtgggag cagaagtgga attttcgggc aactacccgg gctgggagcc aaacccaaat
     1801 tccaaaatca cgccattaac caaagcgatt tatgatgaaa ttttaggtta tgaatctcaa
     1861 attaaagtga ttcacgcagg gctagaatgt ggcttaatca acaaaatcta cccgaatatg
     1921 gattttgtct cgattggacc aactattctc aacgcccatt ctccggacga aaaagtgcat
     1981 attccggcag tggagattta ttggaaactc ctaaccaaac tacttgaaca agcacctgag
     2041 aaataaattt aatcaaaaaa attatataat cttgccccgt aattaattga ataaaacctc
     2101 aattaattac ggggtagctc ttattttctc tgttttaaaa aatgtaccgt gaaagcagca
     2161 attaataaga cgactgctgc acctaaataa agctcgttct ttttccagcc ggcgtctaat
     2221 aaaatacctg caagagttgg ggaaacaatt gagcctaaac gccctacacc gatggcggtg
     2281 cctacgcccg tgctgcggaa atccggtgcg tatagggttg ggttaatggt ataaagcccg
     2341 gtaatgcagc cgttaattaa tccgccaacc aaaatggcta gtgttatcgc aagccctaaa
     2401 ttgccggcaa acacaaaggc aaccacagca gatgcagcca gaatactgaa tgcctgcaaa
     2461 atatgttttg ccgcccagcg actgactaaa aagccgaaaa ttaacgagcc gattgtacca
     2521 ccaactgaaa ttgccattcc cacagtttgg ctttgggttt taggcattcc ggcttcttct
     2581 aatagtgccg gagtccaaga gctgataaag taaaatgagg ctgaaattgc aataaaggca
     2641 agccaaatta gcaacgtatt gcggcgatat tcaggctcga ataaacgggt aattgccact
     2701 ttgcttttac tttttgcctc aatttcagga agttcccagc cgtttcctaa gcctaattta
     2761 acggcaattt gatttaaacg agctttagca ttcaccgggt gttttgaaat taaaaattcc
     2821 accgattcgg gcaatacaaa gaataataaa acgaataccg caccggttaa aatcgaccca
     2881 acgaggaaaa ccgcacgcca gccatattct ccttgcaata acaccgcaga cattccgccc
     2941 agcattgcac caatcccaaa gcctgaggca taaattgcaa tcgctaagcc acgccatttt
     3001 tggctggagt attcactcac tagcacatta gtgccggtta aaatggcggc tacgcctaaa
     3061 ccggttaaaa cacgccatac accaatttca aacgcagaag tagcgaaata agttaggagc
     3121 attcctaacg tggctaagcc tgtgccgatt aaaagcaacg ggcggcgacc aaatttatca
     3181 gcaagtggtg aaagaaagag tgagcctatc gccataccga ataaaccggc actcattaag
     3241 ctgccgatgg ctgcaccgtc taactgcaat tcttctcgga tgcttttggc ggtaaaggcg
     3301 agtgccatta aatcaaagcc gtccagcata ttaagtaaca ccgtaagccc aaccactaac
     3361 cattggaatg aagtcatttt gttatgagca attttttgac gaatatccat aagctccctc
     3421 tgcatcaaaa ttgataaaat tttatttaga gtgaactata gaaagttgat taaatataat
     3481 caaactcaaa atttacataa aatttatgaa agattttcat atttaatcaa aggagggaat
     3541 ttatagcagg aatggcgagg gagaaaatag atagggcgaa taattattca cccctagatt
     3601 gaataggaga aagctatttc ttctccgctt gctcagccgc tcttttgcgt ctgatttctt
     3661 tcggatcagc aattaacggg cgatagatct caattctgtc gccttcttcc accgtttcat
     3721 tcagttttgc cgggcggcta aaaataccga ctttgttttc acgcaagtca atttcggtat
     3781 atttttccaa cacgccggag agcaaaataa tagtttgaat ggtcgcgttt tgcggtactt
     3841 gcagtttttt cagaaaatat ttatcagggt aagcataaag cacctcaaca ttaattttct
     3901 gttcttcact tttttgttct tctggatttt gacgttgttc agacaccata cacctctttt
     3961 gcacgttgtt tgaaagcatt taccattttt aaagttaatt cgttgaacac cttgccgaac
     4021 accattgcta caattgggct ggaaaattca aaatttaatt gcagggcaat tttgcaactt
     4081 tgctcatcaa agggggtgaa tgtccaagct ccgtgtaaat ggcggaaagg cccttcaatt
     4141 aatgccatct cgattttata gggcggcgtc attttattgt gggtactgaa agtttggcta
     4201 atgcctaatt tctgaatgtg taactctgcc tttaattcat tttcgccggt gctaagggtt
     4261 ttggtactca cgcagccgga taaaaattcg gggtattttt catactgatt aacaagttga
     4321 tacatttgct cggcactata aggcacgagg gcagattgat taacgattgg cataatgtct
     4381 cttttgggaa ttaacaagcg gtcatatttt agcgtaaatt tgcaagccta taaagaaacg
     4441 cttttgattt gaagatagac ctcttgctcc ggttgaatcg ctaattcatt aaaagaccaa
     4501 aggctgatcg tactccaaat ttgctgattt tcgacttgaa ttgccagatc aacccgatct
     4561 aaatgcgttt ctattttccg aacattgcct tttaacacat tacgaattga gctttgagtc
     4621 ggtttttgta agctgattga aacctctttg ctggcaatag ttacccttag cttctcgcct
     4681 atttgatggc gggggagttg gttcacccat aatcgctgtg cgttcaagct caagccaagc
     4741 atattatagt ggggaagtgt ttcttccacc ggtaattcaa gcaggctaat tcgctgatga
     4801 tttggctgcc aagcggaaaa tgccgagctg tgccaaaccg ctgaaagggt atcaaatgcg
     4861 gttactttgc cgttttccaa cagcacaaga tgatctgcca atcgaactac ttcctctaaa
     4921 ctgtggctga catacagaat cggtatttca agccgagcgg ataatttatc taaatagtcc
     4981 agtagctctt gcttacgagg gagatcgagg gcagataatg gttcgtccat cagcaaaata
     5041 ttcggtgagc ttaataacgc ccgcccaatc gccacacgtt gtttttcgcc accggaaagg
     5101 cttgccggat agcgattaag caaaggggca atgcctaaca gttccacaat ttgcaaaaaa
     5161 tccgcagaat ccgaccgctt gtagccatat tttaagtttt tttccaccga ataatgaggg
     5221 aaaaggcgat gctcttgaaa cacatagcca atgttgcgtt tttcaggtgg taaattgatg
     5281 ccgttttggc tgtcaaacag cacctgaccg tttaattcga taaagccggc ttgagcggtt
     5341 gaaagccccg caattaaatt aatcaggctg gatttaccgg caccggaacg cccgaaaata
     5401 gcggtgattc ctttattcgg caaatcgaga ttgacattga gcgtcagatt gccgagttgc
     5461 tgaagaagtt taagtttgag catagcgttt ttgcctttct gccagccatt ccgaacagaa
     5521 cagggcaatg agtgaaatca gaatcgccac caagcacaaa cgggcggcag ccatttcgcc
     5581 atcgggggtt tcaataaagg tgaaaagggc ggcaggaatg gtttgggttt ggttgggaat
     5641 gttggagaca aaggtgatgg ttgccccaaa ctcccccaaa gagcgggcaa aacccagcac
     5701 gccaccggca ataatgcctg aaaaagagag cggtaaagtg agcgtgaaaa acacttttaa
     5761 cggtattgct ccaagcgttc tggcggcttg ctccaattta ggatcaactg cctcaaaggc
     5821 taaacggata gaacgcacca ttagcggaaa cgccatcacc attgaggcaa gcactgctcc
     5881 tttccacgaa aaactcaagc tgaaatgaaa ccattcccac aaatattgcc cgattacccc
     5941 tcgtttcgcc atcgaaataa gcaataaata gccaatgaca accggcggta acaccagagg
     6001 gagatgcata ataccattga gcagattttt tccccaaaac tgtttgcggg caagcagcca
     6061 cgccacccac acggcaagcg gtaatgcaag cactacagca atggaggcaa cttttaggct
     6121 tagaacaatc gcattgagtt cttgtggggt gaaattaagc ataatctaaa actatttggt
     6181 tataagctta ccctcgcccc ttgtgggaga gggatagatt tttcttcgtt cagaagaaaa
     6241 atcagggaga gggggaatat tttaaacgct atttgccctc tctctgaaaa atatgtctga
     6301 acgacatatt tttctgtctc tctcccacaa ggggagagag taaatttaat ttacaggata
     6361 aaacccagct gcctcaaatt tcgcttttgc tttcggggtt ttgagaaaat ctaaaaatgt
     6421 ggcggcagag gctttttcac tgactgccgc agcagggtaa acaatttcgc cgtagctttc
     6481 cggtgggaaa acggcaacca ctttgacttt attcgacact ttagcatcgg tggaatagac
     6541 aatcccaagt ggggattcgc ctcgctcgac aaaagagagg gcatctcgta cattttttgc
     6601 cctcgctaaa cgaggttcaa cactttccca taattggtaa tgactaaggg cttttttggc
     6661 atatttgccg gcaggaacgt ggtttgggtc tcccaccgat aaatagctgt ttgctaattc
     6721 tttggcaaaa tcgaccgctt gtatcgcttt tggctcaatg ttactttcgg taggtgcaat
     6781 taatactaac tcgtttctga ctaaattgcg gcgatgttta actttctcag gttgtttttc
     6841 ggcaacataa tccatccact tttggtcggc ggaaataaaa atatctgccg gtgcatcttg
     6901 ctcaatctgc tttgctaata ccgatgatga agcgaaggag aacgtgattt tatcctgtgg
     6961 ataggctttt tcaaaatcct gctgaatatc ttgtaacaca tttgtcattg aagcggcagc
     7021 aaacacggta atctcttgtg aaaaggctgt gcctgataac gttaatgcca ttgtaattgc
     7081 tagttttttt aatgctttca ttttcataac ctcacaatta gttaagaacg cagcccaacc
     7141 cctcgttgaa ttaaggaata ggcaataata tacaagccga tgcaaagtga agtaagcact
     7201 gcaaaagtat aacctaacgg cacatcgctg ataccgagaa agccatatct taagccgtta
     7261 atcatataaa cgatcgggtt gaatttagac accgtttgcc aaaattcagg cagtaatgaa
     7321 atagagtaaa atacgccgcc taagtaagtt aagggagtaa gcacaaaggt tggaatcagc
     7381 cccacatcat caaaggagcg ggcgaacacc gcattaatta cgccacctaa cgcaaaggca
     7441 atgattgtca gcaacagggt taagacgata atcgcaaccg agtagatttc aaacgagaca
     7501 aacaccattg ccacgcacat tactaaggtt gcggctaaac ctgcacgcaa aatactgccg
     7561 gtgacataac cccaaataat attatgggta gagagtggcg aaatcagcat ctcttcaaaa
     7621 tctcgggtaa atttactcaa gaaaaatgaa gaggcggtat tcacataaga ggcggtgatg
     7681 gcggtcatca taattaagcc gggtgcaata aattgggtgt aacccacgcc attcatttcc
     7741 ccgattcgcc caccaatcag cgtgccgaag attaaaaaat agagcgtggt agtaatcacc
     7801 ggtggcacta aagtttgtcg ccaaatccgc aaaatgcggc ggcactcttt gtaagctaag
     7861 gtataaaatc cgattaaatt cattttactg agccatattg ataaatagtt cttccaagcg
     7921 gtttgatttg tttcgcatac ttagcacctc agccccttgg gcggaaattt gcgaaaacag
     7981 attggttagc ccttgctggc gttttacatt cacttcaagg gtgttttcat caagccattt
     8041 atgcgggtaa ttttgaatca caagcggttg attttgctca gaattttgca aatctaacac
     8101 aaatacctca ctttccaatt tggcaagcaa ggctttcatt gaggtgtttt caattaattc
     8161 gccgtgttga ataatgccga tgtgacggca tagggtttcc gcctcttcta aatagtgggt
     8221 agtgagaata atagttgtgc cttgattgtt tagatcccgc aagaaatccc acaatgagcg
     8281 gcggagttca atatccaccc ctgcggtagg ttcatctaaa atcagtagtt ttggattgtg
     8341 cattaaggct cgggcaatca tcacccgacg tttcattcca ccagaaagct cacgggtgag
     8401 gtgggtgcgt ttttcccata ggtcgagcaa tttcagccac ttttcggcac gtactaaggc
     8461 ttcactgcga ggaatgccgt aaaacccggc ttgttgcact agcacatcaa tcactttttc
     8521 aaactgattg aaattaaact cttgtggcac taagccgatt tgatgcttta attcgacttt
     8581 ttgggtgtct aaatcatagc caaacacttt cacgctgccg ctggttttat ttaccagtga
     8641 gctgataatg ccaatagtag tagatttacc tgccccgtta tgcccaagta gggcatagaa
     8701 atcaccttgc tcgaccacaa gattaatgcc tttaacggct tttacacctg ttgggtaggt
     8761 ttttaccaaa tcaattaatt ctaatgcttt catttgtttt actcagtttc cgccaccgct
     8821 cgaatggtcg attcatcaat ttgtgcatca aaagcgttgc gaagtaacat taatttttca
     8881 tcgttaagca gagctgattt tgctgcctca gttaattgtt tgaaaatggc tcgccgaatt
     8941 tcaagcggag tttgctgttc gctattgtca ccaatggtca attcgtatga atagcctttt
     9001 tcggcaaggg cagcttctaa atttttacgt gattccggat tatctaagtg agccatattc
     9061 ggctttaaca ccaatgcgag gtgctgttca ttttgttccg ctaaatagct atttaaggcg
     9121 atctgacggg aaaatccgcc taaattgagt gagttggcga tgtcacacca tttatcctgc
     9181 tgacaagata aatgaatggt ttttgccact aattcagggg tgcgttcttg caaaatcgct
     9241 tgtttaatat cagaaggttt ggcactgtct gcttgatttt ctaattcagg attgagccac
     9301 gtccagcgat aatcttcatc ttccacactt ttaggggcgg attcggtttt ctttgaaact
     9361 tgcagtacgg ctttgtgctg attttccgcc aagctgataa accgctcttg caatgaagcg
     9421 gtctgatttg ccgatttttt tgcaataact tgaggggctt ttagctcagg cttttttttt
     9481 tcggtttgag ctaaatttgc ctgctgtgct tgtagctttt tgcgggcttc gagggctgcc
     9541 attgccggtg aaagagtcgc aggagcagac ggcgaaatag cggtatctac tgcctgtggc
     9601 ggttgagcaa tgctttcaac cgctgtggta gtattggcaa cagtaaccgt tttttgctga
     9661 ttttgctcaa aattttctct tagctggcta atttgatttt gtggttttgc tgtcgtaacc
     9721 gctgaaaccg aatggtttgg ttgtgtaacc ttttccactg caactgttgc tattttttct
     9781 gcctgtttag ggtggaaagc caacgcacgc aaaatcgcca tttcaacacc ggcacgttgc
     9841 tccggtgcaa aaggcaactc ttttttactg ttgaggatta attgatagaa aaattgcacg
     9901 tcttcgggcg gaatttgttt tgccagaaaa tgcactaatg tttcttcggt tgtaggtgtt
     9961 ttcactaatt gcaacattgc aattttgtgt aacacttctg ccacatcgct taataattgt
    10021 tgccaatcaa cgcctttcgc tgcaatttgc tcgatgatcg ccattgcttt ttcaccgtcg
    10081 gcttgggcgg ttgcttgcac taattctagt ggttgattat cgtcaatcaa ccctagcatt
    10141 tggctgacta tcgcaagcgt aatattggca ttactcattg caatggcttg atcggtgagg
    10201 ctgagagagt ctcggatact accttgtgct gcttttgcca acttttctag tgccaaaggc
    10261 tcaaacggaa tgttctctgc atttagaata aattcaagat gacgggcaat ttgcgattgc
    10321 tctaatgccc gcagatgaaa ttgcatacag cgagagagga tcgtaatcgg cagtttttgc
    10381 ggatcagtgg tagccagcaa gaatttgaca tattcaggcg gctcttcaag ggtttttagt
    10441 aaggcgttga aactatgacg agagagcata tgcacttcgt caattaaata aaccttaaaa
    10501 cgcccaacgg tgggtttgta ttgaacgtta tcaagtagct cacgggtgtc ttccacttta
    10561 gtacgagaag cagcatcaat ttcaatgaga tcgataaaat gcccttcttc aatcgcttta
    10621 caattcgcac attcaccgca aggctcggcg gtgatcccgt ttacacagtt taagcctttg
    10681 gcgaataaac gggcaataga ggttttaccc acaccacgag tgcctgaaaa caggtaagcg
    10741 tggtgcagtc tatcttctct taagctgttt tcaagagcag ataaaacgtg ttgctgacca
    10801 actacttccg agaagcgttg cggtctccat ttacgggcta aaacttgata actcattgat
    10861 ttttctattc aatttggaaa tcacaagcgg tcatctttcc gaaaaatttt gcaaaatttt
    10921 agcaaaaagc caccgcttgt tccccattaa tgaccttcaa agctgactag gctaaaggat
    10981 ttaacccctt ctttttccaa acgctcttta ccacctaact caggcagcca aatcacaaag
    11041 gcagcgtgtt ctacgttacc acctaagcga cgaattagtt ttgcagttgc atcaatagta
    11101 ccaccggttg cgagtaaatc gtcgatgacc aatacattat cattagcact cactgcgtct
    11161 ttatgaattt ctagcgtgtc ttcaccatat tcaagcgtgt aagattgcga aatcacttca
    11221 cgtggtaatt ttttcggttt acgaaccaac acaaaaggca cgcctaacgc taatgcaaca
    11281 ggggcaccaa aaataaaccc gcgagattct gtgccgacaa ttttagtaat acctttgtct
    11341 ttaaattctg caacgatggc atcaatggtg gcttggaatg cagttggcac ttctaaaagt
    11401 gaagtgatat cacggaagat aatccctgct ttcggataat ctggaatgga tttgatagaa
    11461 gatttaatta aatctaattg gttcattgtt tgacctacgt gtaataaaaa aataactgga
    11521 aaactctata gaaaaacagc agaaatttca aggagaaatt gataacctta cgtttgatag
    11581 tacagcttac ttttcagttt ccttttccct atattataga taaatatctt ccctgtttcg
    11641 tctggtttta agcaaacgta aaatccaaac atactgctcg gggtttttct ccacaaaata
    11701 ttcaattact cggttcattt ctcgggcgga ttgaattggg tctcctgaaa attcaagcgg
    11761 tggcaaaatt tccatttcat attttgcttt ttccgcatta taaatcgaga acattgggat
    11821 cacttccgca tttgccactc ttgccatttt atttaagccc ggcaaagtgg ctttttcggt
    11881 ggcaaaaaag tcggcataca cacttagctc ttcgccgaaa tcttcatcgg gcagaaaata
    11941 accaacatca cctttacgca catcggctaa aaacgcttta atcccatttt gacgagtgtg
    12001 cattcgccca cctaaacgct cacgggtaat attccacagc cagtccacca acgcattacg
    12061 gtgtggattg tacattgatg tcatcggata accgagcgag aacatcgcca cccccgccat
    12121 atcaatcgac caagtatgtg gcactaacat aatcacgttt ttaccgctct ctttggcttt
    12181 caccacattt tcaaagccgg taaattcaca ccgtttttgt aaataagagg ccgggcggat
    12241 tgcagtttcg ccaatcgcca acatggtttg tgctaccgtg ataaacattt tctcgaccac
    12301 ttcttcacgc tttttctcac tccaatcggg aaaacagtaa cgcaaattca ctttagcacg
    12361 gtggtagcct tttttatttt tctgcttgag atagcgatac gccatcttac ccacaaaagc
    12421 ggataattta tccctaattc gcaccggcac ataggctaaa atcactaatc ctaatacacc
    12481 taaccatacg ccccaatatt tcgggtgtag aaaagaccat aggaatttgt gcgtatagcc
    12541 gtcttgggcg gtaattcgtg tcattctata attcctcatt atttgtcact ttctttgctt
    12601 cgccaaagaa agtaaccaaa gaaaggcaac cctacttcac cgctatcttc gcttggtttg
    12661 aatttgctta acgaaaaaat tccaaactcg ccgcttcgct gctcaaacaa ggaatttttc
    12721 ctacaaattc aaagtcgttc gggcggttca gaagggaacc cggcagagca tcattttgca
    12781 aaattttcca aaaaaatcac cgcttgtatg gtcggatcgg gttcccttct gagttgcccg
    12841 aacgacttga aatttttagg aaaataactc gagcgagagc gaagcgaaca tcagggttat
    12901 ttttcgttaa gaaaatttca accaagtgag gatagcaaca aagcagggtg tgctttcttt
    12961 tggttacttt tctttgcaca agcaaagaaa agtgacataa cacatcatct cttatcaata
    13021 atattcttca ccgccaatat caccccaagt ccaataaaag cccccggagg taaaattgcc
    13081 agtagtaaac ctgaatcaat atgcaataca tcaatgcgta gggcttttgc ccaatcgcca
    13141 aggagtagat ctaagcctga aaacagcgtg ccgttgccaa taatttcacg caacgcgcct
    13201 agcaccacaa ggctaaaagt cattcccagc cccattgaaa agccgtcaaa agccgagaat
    13261 ttgacctcat tttttgaggc ataggcttct gctcgtccaa tcacgataca gttggttaca
    13321 atcagcggaa taaaaatccc gagcgattgg taaacaggga aagcaaaagc attcattaaa
    13381 agctgtactg ccgttaccac cgttgcaatt accatcacat aaatcggaat ccgaatatcg
    13441 tgtggagtga ttttccgaaa cagggaaacc gtgatattgg tgcaaattag cacaaacatt
    13501 gttgccaagc ctagtccaag tgcattggtt acgctgtttg aaaccgccag tagtgggcaa
    13561 agccctaata attgcaccaa agcaccatta tttttccaca caccatcagc gaaaatcgtt
    13621 ttccaaacgc tggattgttt cggggcaacg tcaatattcg tcacagggat ttgttgttct
    13681 ctttccattt ctccccctat ttgcacgctt taaattgatt aaacattgtc gggttttgag
    13741 ccagctctgt caccacccat ttcgcacttt ggcggatatg attgaccacc gcacgaggtg
    13801 taatagttgc accggtaaat tggtcgaact tgccgccatc tttttttaca ttccaatccg
    13861 cttcgttttc taaactaaaa agttgattgg taaaagataa gatccaatcc gacactcggg
    13921 tctcaatttt atctcccagc cccggagttt ctttatgctc aagggtgcga acgcctaaaa
    13981 tgttgccgtt cggctcaatc cccatcaata gcacaatatc gccggaatag ccgtccggag
    14041 ccgttccttg aactaggtaa gcggtcagat tttccgattt ttttgcaaca taaatacggt
    14101 tcaaataagg ggcattttcg agctgaacca gtttgcaagt cgccaacaca tcattatcaa
    14161 aatggctttt cggcacaacc tcttccaata atttgcgttg ttgcattgcg gttacatcat
    14221 caatcttgcc tttggtaagc aggtacacac cggttgaaac agcggtgcaa agcaaggcaa
    14281 taaagcctaa aattaaggcg taatttaagg taatttttga ggtgttcatt atctgttatc
    14341 caattttgtg ccgtataatc tcggctgcgt ataatggtcg attaacggta cgcaaatgtt
    14401 tgccaataac actgaaaatg caatcgcatc agggtaattt ccgtagtagc ggattagata
    14461 aaccaataat cccaccaagc caccgaaaat cagttttcct cttggggtaa tggaggctgt
    14521 taccgggtcg gtcgcaataa aaaatgcccc gaacatcatc gcaccgctaa agaaatggct
    14581 cacaaaatgc aagtgcgatt gttggctaaa cagctcggtg aatccactaa aaaaggcaaa
    14641 agttgccaac attgctaccg gaatttgcca atggataatc cgtttataaa tcaacaccaa
    14701 accgccgaat aagaacgcaa ggttcagttg tagccaaccg gtcgcaaaca gcccgttgaa
    14761 aatcggcgta ttcattaccg cgtcaaaacc tgattttgca aggctgcttt tcatactatc
    14821 aagcggggta gcttgtgcaa tgccatcaac actattaact agctgatgaa tactaaaacc
    14881 atcgctagtt accccgtaaa aaatcaacga aatcgcatca cgaaatgtcg gtggttcact
    14941 taataactca atcggcacta tccacgccgt catttgcacc gggaaagaaa ccaacaacaa
    15001 cgcatagcca accattgccg ggttaaatag attctgcccc aagccaccat aactgtgttt
    15061 tgccaataat aacgccacaa tcacgccaat caacacaagc caataaggag cataaggcgg
    15121 aatcgacatc gccaaaatca aggcggttaa aatacctgat aagtcagcca aatagaaagc
    15181 ggttgttttt ttgcgtaatt ttgcaatccc gatttcaatc acaatcgcaa ggctaacggc
    15241 aagcaacgtt tgaatcagca caccatagcc gaaataataa agctgaaccc caaaagcagg
    15301 taacatcatc gcaatcaccc acagcataaa attcgcagtg agattgctcg aatgagtgtg
    15361 gggggaactg accattttaa acatctataa aaccttttta gtaaaaaatt gcaaaaaaat
    15421 gaccgcttat taaagtctcg gcaaattcaa attaaagcgt attgccagca ggcggataat
    15481 aattacggtg aacacggtgg caaggtaaac ccaatcgctt tcgagcccaa ctgagtttgc
    15541 agccacaaaa atcacaccac cgataaggct ggcggtcaca tacacttctt tttgcaaaat
    15601 gatcggcact tcgttgcgta aaatatcacg gattaagcca ccaaaacagc ctgtcacacc
    15661 gcccagagcc acacagatca gtgggtgcaa gccgaaatcc aagccttttt gcacgccaat
    15721 cacggtaaat acgccaagcc cgatggcatc aaacaccagc aagccggttt gccaactttt
    15781 gcgggaaatt tggttgcgga aaatagcggt aatcaccact gcaagggtaa tcatcagcac
    15841 atagatcggt tgtttcatcc aaaacaccgg cgtggagcca atcatcatat cccttagcgt
    15901 accgcccccg accccggtca caaacgctaa aataaacata ccgaaaatgt ccattttgtg
    15961 ctggcgggca gcaattgccc ccgaaatcgc aaacacgata gtgccgatta agtcctgaat
    16021 aaacaggaac gaccacggca atgccggaat tagctcgcta aacattgttg cttttctcct
    16081 gctgagcggc ttttttcgct ttagctctgg cgatggcggc cgcaacggcg gctttgcgtg
    16141 ggtcttcgct ttccgttttg ggcgaatggt tattcgcccc tacagattta tccgatgtag
    16201 tttcgttcat tgattgtagg ggcaaatcat tatttacccc aatcacagca ttggcaatat
    16261 cttccggttt ttcgaccgct tgttgagctt gttttttcgc tttagctcta gcgatagctg
    16321 ctgcaacggc ggctttgcgt gggtcttcgc tttctgtttc gggcgaatgg ttattcgccc
    16381 ctacagattt atccgatacc gtttcgttca ttgattgtag gggcaaatca ttatttaccc
    16441 caatcacggc attggtaata ttttctgatt tttcgaccgc ttgctgtgcc tgttttttgg
    16501 ctttggctcg ggcaagggca gccgcaacgg cggctttgcg tgggtcttcg ctttctgctt
    16561 cgggcgaata gttattcgcc cctacagatt tatccgatgc agtttcgttc attgattgta
    16621 gaggcaaatc attatttgcc ccaatcaagg catttgtaac attttccgat ttttcgaccg
    16681 cttgttctgc ctgtttggct aaacgtctgg ctctgcgttg tgccattaaa tcgctgttat
    16741 caggctcgcc gttaggtttt acctgtactt ctgccggtat ttcttggact gtttcaaccg
    16801 cttttttcgc tttcaggcgt tcaagagccg cttttacagg atcaacacca cctgcatttg
    16861 ccacttcttc acggcgtttt tccgccgctt ggctaatgcg agcagttctg gcatctcgtt
    16921 ctttttgtaa gcgagcttct ctcgcctcaa agcggatttt agcctcttcc gctttgcggg
    16981 ctttttcctc aatttcctcg atttttgctt tttcttggcg gaaatattgg attaacggaa
    17041 tgtagcttgg gcaaacgtaa gcacaaacgc cacactcaat gcaggcatct aaatggtatt
    17101 ctttcgattt atcgtgatct tctgcacggg caaaccaata aagttgctgt ggcaataacc
    17161 ccaccgggca agcatcggaa cagcttgaac agcggataca actacgctcc ggttcaggtg
    17221 gtgcatattc aaaatgatca ggggcaatca agcagttcgc agttttggta atcggggctt
    17281 gcaatgcagg caaaataaag cccatcatcg gtccgcctaa aaacaccgga aagcgtttat
    17341 cggcttgata atctacctgc tccaacaagt gctgaattgg cgtgcctaat cttgcccaca
    17401 cgttcccctt gttgcgaatt ttatcgcctg tcagcgtcac tacccgttca atcaaaggtt
    17461 catcatcaat aattgcccgt ttaaccgcaa acgccgtgcc gacattgtgc atcacaatgc
    17521 ccatttcaat agtgcgtttg ccagccggaa tctcaagtcc ggtcaacact tgaatcagct
    17581 gatcagaagc tccggaggga tatttagtcg ggatcgcccg cacaaacata tcgttcgagc
    17641 cttttaaagc ggtttctaaa gcttgaatag cgtgcggttt gttgtcttca atcgcaatca
    17701 ccacttcttc cgggcgaagc acataacgca gaatgcgaat accttcgata agatccgcag
    17761 tgaaatcttg cattaagcga tcgtcacagg tgatgtaagg ctcacattct gccccgttaa
    17821 tcaccagtaa tttacagcgt ttatccgcca aacttaattt tgttgcggtt gggaataccg
    17881 caccgcctaa accggcaatg ccatattggt aaactttttg gataatttga tcgcttgtta
    17941 ggcttaaaaa atcctcaatc ggctggcgtt ccacccattt atctttacca tcggtttcaa
    18001 taatcaccgt tatttcgggc aaacctgagg cgtgagcgga aacataaggc tcaatcccaa
    18061 tcacccgccc ggaggttggg ctgtgtacgg gcagttgacg gaagtgatcg cctttcgtga
    18121 gcggctgccc tttcaatacc acatcgccga ctttgactaa taattcccct gcccagccag
    18181 aatgttgaac cagtggcaca tagaaaaact tcggtaaatt taaggtgcga attggcttgc
    18241 tgtttgattg ggatttattt tccatcgggt gaataccgcc cgggaaatcc cacagtttac
    18301 ccgtttcttt attttggcgg attcgctcaa tcactaaatt aggattgctc atttttgcct
    18361 ccgccggtaa ctaattttct ctgcaattca gtggtattca caatcggaat aattaaatct
    18421 tggtcaaatt tccagttcca agattgggtt gtcggtttaa ttggtcgcat ttcaatacag
    18481 ttggtcgggc aaggggcgac acaaagttca cagccggtgc aaagatccgg aataatggtg
    18541 tgcattgctt tattcgtgcc gataatcgca tcaaccgggc aagcctgaat gcacttagta
    18601 cagccaatgc agagatcttc aatcacaaaa gccactttca tctcaggctc tgccatacct
    18661 tccattggcg gcacttctac cccaagcaat tcggcaagat tcaccactaa aggttgtcca
    18721 cccggcacac atttagtgat cacatcacca ttagcaatcg cctcagcata aggcttacag
    18781 cccgggtagc cacattgacc gcattggctt tgtggtaaaa gggcatcaat ttgatcgaca
    18841 atcgggtcgg attcaacttt cagtttaatc gaggaatagc ctaaaaccgc cccgaaaatc
    18901 agtgcgatca cagcaatagc gataagaata taagcgataa ttggcaaatc aagcattaga
    18961 gtttcaccaa tcctgtaaag cccataaagg caagcgacat caagcctgcg gtaatcagag
    19021 caattgatgc tccttggaac ggacgaggca catcagcggc agccaaacgc tcacgcagag
    19081 ccgcaaataa aactaacacc agcgagaaac cggcagcggc tccaaaacca taaagaacag
    19141 attccaccaa gttattggct aaattcacgt ttaataatgc cacccctaat acggcacagt
    19201 tggtggtaat cagcggtaaa tagatcccaa gcaagcgata aagtgtcggg ctggttttat
    19261 gcacaatcat ttccgttaat tgcacgatca ccgcaatcac taaaataaac accaaggtac
    19321 gcaaaaattg agcgtttaac ggctcaagca aataggtttc catcaaataa gcagagagcg
    19381 aggcaaccgt cagcacaaag gttgtcgcca accccatacc aatagcagtt tccacctttt
    19441 tcgacactcc cataaacgga caaagcccta gaaatttaac taagacaaag ttattaataa
    19501 gggcggtgct gatgaccaac agaatataat cgaccataaa ttccacaaaa ttaaatatac
    19561 aagcggtcaa aaacgcattt tattttgcaa aaaacagaga aaatctgacc gtttgttaaa
    19621 gcatctcatt aaaaataaac gttatattat ctcttgtttt cggctcattc acaataagaa
    19681 atcggaggta cttctagtaa acataccata tcaaatatga tcttgttacc tttgtttcta
    19741 tctctggtag aatggagaat gtggggacta agctatacag catgaaaggt gaaaggagct
    19801 tgattttcta agttaatcct aaaaagtctc actcctttga tatagaggat attagaataa
    19861 caaccaatta attactcgat aaataaacat aataatccca aatataatga aaacataata
    19921 aatctttttc cataaaggga gttttacctc ttc
//
LOCUS       DANLRW010000039        19916 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.039, whole genome shotgun sequence.
ACCESSION   DANLRW010000039 DANLRW010000000
VERSION     DANLRW010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19916
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.039"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(87..725)
                     /locus_tag="PXA71_001182"
     CDS             complement(87..725)
                     /locus_tag="PXA71_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HDL5105303.1"
                     /translation="MRYTTEQIIEKLRQLKVVPVIALDKAEDILPLAKTLSENGLPVV
                     EITFRSEAAEEAIKLVQANYPEVLIAAGTVLTKEQVLTAKNAGADCIVTPGFNPTIVK
                     YCQVLGLPVTPGVNNPMAIEAALELGIQAVKFFPAEASGGVKMIKALLGPYGNLQIMP
                     TGGISPQNINDYLAIPNVVACGGSWFVEKSLIKEQKWEEIGKLTKEVVELVK"
     gene            complement(813..1760)
                     /locus_tag="PXA71_001183"
     CDS             complement(813..1760)
                     /locus_tag="PXA71_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HDL5105304.1"
                     /translation="MKKLAILGECMIELNGEPFGEMHQTYGGDSLNTATYLARVSSPE
                     QIEVRYISALGTDKLSQGMLAAWQVDNINTDFVLRDEHRQPGLYLIQLDKQGERTFLY
                     WRNQSAARYLLQHPGYPKALSALNEVDMVYLSGISLAILPENDRTLLIAQLRELKTQG
                     VKIAFDSNYRPKLWESVAAAQAHYAELLQLVDLALVTFDDEQLLWGDVNEQATFDRLT
                     QYGIQTIVVKQGSLGATVLQNGERTFVPTVAVEKVVDTTSAGDSFNAGFLNGYLLGKD
                     VVTCCQQGNAVAGIVIQHKGAIIAKSATTHLKSQFEQSI"
     gene            complement(1777..2622)
                     /locus_tag="PXA71_001184"
     CDS             complement(1777..2622)
                     /locus_tag="PXA71_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5105305.1"
                     /translation="MSIAQNHNFKDKVVVITGAGGVLCAYFAKEIAKTGAKVALLDIN
                     LEAAQNFASEIADEGYIAKAYQTNVLELESIKQARDEILKDFGTCDILINGAGGNNPK
                     ATTDNEFHDINLPENTKSFFELDKAGIEFVFNLNYLGTLLPTQVFAKDMLGKEGANII
                     NISSMNAFTPLTKIPAYSGAKSAISNFTQWLAVYFSKVGIRCNAIAPGFLVSNQNKAL
                     LFNADGTPTARANKILTNTPMGRFGQADELVGAILFLMDHHYSSFINGVVLPVDGGFS
                     AYSGV"
     gene            complement(2634..3905)
                     /locus_tag="PXA71_001185"
     CDS             complement(2634..3905)
                     /locus_tag="PXA71_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005668000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease"
                     /protein_id="HDL5105306.1"
                     /translation="MLWLFLGSLFLFLFLGVPVALSMLLSASFMLWKMDMFDAQLITE
                     NFVMGTNNFPLMAIPFFMLTGEIMKHGGISERIINFAMSMVGHIKGGLGYVVIISGLI
                     FAGLSGSAVADTAALGAILIPMMVARKYDVARSTGLICAAGIISVVIPPSIPMIVYGI
                     TAGASITKLFMGGMVPGFLMVLGLWLVWKFLYRNEEQTVEPKKTGKERWAAFKSAFLP
                     LLLPIIIIVGLRGGIFTPTEAGVVAAIYAAIISIILKGLTLDKIQDVFLGTIKTTAMV
                     MFVAAAAMISAFAVTVAQIPMELVEFIKGITDSPTVLMFVIMIFLLLVGCVMDLIPAV
                     LIFVPVLLPLLRAYNIDIAYFGIMMVINLSIGLITPPVGTVLYVGSGIAKIGIARLTK
                     GIYPFLLVYAAILFLLILFPEIIIVPMNWLS"
     gene            complement(3908..4387)
                     /locus_tag="PXA71_001186"
     CDS             complement(3908..4387)
                     /locus_tag="PXA71_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL5105307.1"
                     /translation="MQISTALDRTLKLLAIIALSTMIILVFFNAVLRYFFDSGIAWSE
                     EFARICFVYMIFLGIILVAKERGHLTVDIVVSALPAKVQMYLLFFADILVLVALSFIT
                     YGAYQLMLLTYTQKMPATEISSAFLYFAAVISSISYFAIVFTNLWKHIRLAFIKEEK"
     gene            complement(4448..5431)
                     /locus_tag="PXA71_001187"
     CDS             complement(4448..5431)
                     /locus_tag="PXA71_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5105308.1"
                     /translation="MKLKTFTKALLISSLMFTGSAFAKTIIKIGHYNSDVHPSNIALQ
                     EYFKKTIEEKTEGRYEIRIFPNNQLGGEDQIVNGLRNGTIEGGITGLLLQNVDPIFGV
                     WEWPYLFKDNAEAKKVLESPIAQEIGEKMEKYGIKLLAYGMNGFRVISSNKKVENFDG
                     FKGLRLRVPLNSLFVDWAKAMHINPQSMPLSEVFTALEQKVIDGQENPYMLIKDSGLY
                     EVQKYIIESNHIFSPGLLQLSLKTWNKMSKEDQTIFLEAAKLYQEKEWELAMKMEQDV
                     KDFFHKNGKEVIVPSEQFKADMLKASETLYQNFYQKYDWAKDVISKIHAAK"
     gene            complement(5460..6485)
                     /locus_tag="PXA71_001188"
     CDS             complement(5460..6485)
                     /locus_tag="PXA71_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HDL5105309.1"
                     /translation="MEKPLKSVCLVEPNKVGIQTVSYPVKGENDVLIKVEGMGICGSD
                     IGAFRGTNPLVTYPRILGHEIVGTVIESGKGMPNNINVGDRVIIEPYIYCGHCYPCSI
                     GRTNCCESLKVLGVHIDGAMQEVVRHPAHMIIKTPDMPIHELALAEPLTISLHAIHRT
                     KVKAGEHVAIIGAGAIGLMAALVAKAYGATPILIDILDKRLDYAKSIGIPHTINPTKE
                     NDLEAIKSITNGRMAEVVIEASGANVAVQNTLKYTSFAGRIALTGWPKTETPLPTNLI
                     TFKELNIYGARTSKGAFEEALELLASRRIEPKDIISKVITFDEIPHYIEELSANPDDY
                     LKIIAVF"
     gene            6649..7410
                     /locus_tag="PXA71_001189"
     CDS             6649..7410
                     /locus_tag="PXA71_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FCD domain-containing protein"
                     /protein_id="HDL5105310.1"
                     /translation="MQNSSRTYTKIGKILKEEIAQGKYRVGDKLPTERDISERFEVSR
                     TIVREAIVMLEVEKLIEVKKGSGVYVIRVPELFPEDFPEEKDNELRDVGPFELLQARQ
                     LLESSIAEFAAQQATKQDIQVLRNILESEKKLLLEKMDDYSADKEFHLALAHMTGNDV
                     LIQLQEQLWRYRFNSAMWAQLHSRILQHDHHHLWIEDHERILNAIQRKNPALARKAMW
                     QHLENVKTKLLELSDVEDPKFDGYLFNVNPVVVGI"
     gene            7440..8624
                     /gene="uxuA"
                     /locus_tag="PXA71_001190"
     CDS             7440..8624
                     /gene="uxuA"
                     /locus_tag="PXA71_001190"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012341261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HDL5105311.1"
                     /translation="MEQAWRWYGPNDPVSLDDVRQAGATGIVTALHHIPNGQVWSVEE
                     INKRKALLAEKGLVWSVVESVPVHEEIKTQTGNYQQWIDNYKQTLRNLASCGIDTVCY
                     NFMPVLDWTRTDLEYEMPDGSKALRFDQVAFAAFELYILKRPGAEATYSSAEQAEAKA
                     YFEQMSDADIAKLTKNIIAGLPGSEEGYTLEEFQAQLDRYQGLSAEKFRTHLAYFLNE
                     IVPVAQEVGIRMAIHPDDPPRPILGLPRIVSTIEDMQWFVETQPLAANGFTFCTGSYG
                     VLAENDLVKMAEQFADRIYFAHLRATQREENPQSFHEADHLAGDVDMFGVVKALLTEE
                     YRRKANGDHRLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLRGLAEFRGLELALKKVYF
                     ND"
     gene            8675..9544
                     /locus_tag="PXA71_001191"
     CDS             8675..9544
                     /locus_tag="PXA71_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5105312.1"
                     /translation="MFKKYFGEIILFLVTFIAAAGWFFSKHALVGLPPIGFMGGRFIL
                     ASLILLPFSYRELYRLDKVQVKYSVITGLTYGIYTIFWVLGLAFSTVFGEGAFLVSLA
                     MLIAPLLSWLIFKHTPPKIFWLALPIALSGLYFLSAEKGIFHFSLGSTIFLVSSVFGA
                     LYFVLNNQYAKQVSLFPLITIQLAIVGAVCSLYSYFMESWHFPILTEVWLWFAASVLI
                     ATNLRFLMQTLGQKYCHIGTSALIMLLEPVWTLLLSVMLLGEQLSATKWLGCSLILIA
                     LIIYRLPILRLKK"
     gene            9712..10026
                     /gene="rsfS"
                     /locus_tag="PXA71_001192"
     CDS             9712..10026
                     /gene="rsfS"
                     /locus_tag="PXA71_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDL5105313.1"
                     /translation="MEQNLVEFLTKTLDDLKAQDILAIDVKGKSSITDTMILATGTSS
                     RHVASTAERLITEAKQAGFEVFGDEGKAVADWIVVDFGKAMVHLLQSDSREMYQLEKL
                     WA"
     gene            10103..10570
                     /gene="rlmH"
                     /locus_tag="PXA71_001193"
     CDS             10103..10570
                     /gene="rlmH"
                     /locus_tag="PXA71_001193"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010618862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDL5105314.1"
                     /translation="MKIQLIAVGTKMPAWVTTGFEEYQRRFPKEMPFELVEIPAGKRG
                     KNADTKRILELEGKAMLAAAGKAKIVTLDIPGKAWTTEQLATQLEGWKNDGRDVALLI
                     GGPEGLSPECKAAAEQSWSLSPLTLPHPLVRVVVAESLYRAWSVTINHPYHRE"
     gene            10594..12543
                     /gene="mrdA"
                     /locus_tag="PXA71_001194"
     CDS             10594..12543
                     /gene="mrdA"
                     /locus_tag="PXA71_001194"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDL5105315.1"
                     /translation="MFGKLAKFTASNQREKVRDGQAESNLYARRALVAFLGVLALSGV
                     LLTNLYHLQVVNYEDYQTRSNGNRIKLLPVPPARGLIYDRNGKVLAENLTYFGLFIVP
                     EKTENIEQTLTELKDIVGLTDEDIENYHKEKKRSSRYTPIMLKGNLNEAQMARFAVNQ
                     YRFPSLDVQAYYKRNYPYGELLTHIIGYVAKINENDKKKLQEAGKFGNYAGSHDMGKL
                     GIEKFYEDQLHGVTGFEEVEINNRGKVIRKLRDQAGVAGSSIRLSIDVELQQYVMSLI
                     AKHKGAVVVLDPRDSSILAMVSNPSYDNNLFVGGISGQDYKALLDDPTRPLYSRTTQG
                     TYPPASTIKPFMAVAGLEEGMITPSTTISDPGYWILPGTTQRYRDWKRSGHGATNVNK
                     AITESSDTFFYQLAYKMGIDKMSDWMKKFGFGVKTGIDIFEESAGVMPTREWKQKRYK
                     KPWVQGDTIPVGIGQGYWISTPLQLAKATAVLINNGRVNTPHLMLEVQSSNSVTPYQD
                     PLLYEDIKGVPDVYWNLAKQGMYNVNHAANGTARKVFAGAFYHSAGKTGTAQVFNLNG
                     KNYDKNAIKKELHDHAWFIGYAPYEQPKIVVALILENAGGGGSAAAPVARQIMDYALR
                     KGIGEQPDSQNSEQNKPLVTEEHHE"
     gene            12536..13663
                     /gene="rodA"
                     /locus_tag="PXA71_001195"
     CDS             12536..13663
                     /gene="rodA"
                     /locus_tag="PXA71_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDL5105316.1"
                     /translation="MNSGFKKLFWKIFSLDLLLLSGLLAITGYGLLVLYSASGANERM
                     FTSRLIQVSLGLGLMLIMAMVPPRFYQKVSPYLYIFCLILLILVDLVGETSKGAQRWL
                     NLGFVRFQPSEIAKLAVPLMVATYLGKRPLPPSFKDTFIALAIIIVPTLLVAIQPDLG
                     TSILVCSAGIFVLFLAGLSWKLIGAGVVFLAGFIPIMWFFLMHDYQKTRVMTLIDPNK
                     DPLGAGYHIIQSKIAIGSGGINGKGWMEGTQSQLEFLPEPHTDFIFAVLSEEHGMIGV
                     LILLAIYLFIIARGLVIGTKSDSAFGRILSGGTALLFFVYVFVNIGMVSGILPVVGVP
                     LPLFSYGGTSYVTLMAAFGLMMSTYVHRKRVGSNNPYDKLK"
     gene            13755..14414
                     /locus_tag="PXA71_001196"
     CDS             13755..14414
                     /locus_tag="PXA71_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HDL5105317.1"
                     /translation="MRLGKIVTLLLAGFLTFSSLNSLAATKNTKAKSSILAKKQATSK
                     AIKKVGISKVKKKEVVAKATKKKTISTVTTKPIKSTKKLARKVVKKTVTAKKKLVKKQ
                     HKPLVKKHFQTGVASYYANYFNGRRTANGETFNNAKMTAAHRTLPFGTLIEVTNLRNG
                     RSVVVRVNDRGPYAHARVLDLSSAAAKKIGMHHSGTARVKIAIVDKSKLGSTNQFYVM
                     N"
     gene            14428..15606
                     /locus_tag="PXA71_001197"
     CDS             14428..15606
                     /locus_tag="PXA71_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HDL5105318.1"
                     /translation="MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMD
                     YNSGEVLVSLNPDQRQYPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKFPG
                     SSLMFLDLNSKVSVGELMKGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLK
                     NTHFTTVHGLDDPEQYSSARDMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNG
                     LLWDKTIQVDGMKTGHTDKAGYNLVASAINPNTRLISVVMGVPTYKGREVESKKLLQW
                     GFANFETIKSIPAAQSVAEQSVYYGEVNKVQLGSVQDSFVTIPKGRSADLKARYELEK
                     KNLEAPLAKGQVVGKMIYQLDGKDVASTNLQVLQDVPEAGIFGKAWDWIALTVKSLFD
                     "
     gene            15774..16073
                     /locus_tag="PXA71_001198"
     CDS             15774..16073
                     /locus_tag="PXA71_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HDL5105319.1"
                     /translation="MSQPKAINLQDLPQAKLKDLLEFPCHFTFKVVGANREDLVDDVV
                     VVTQKYAKGDYNPRQQKSSKGTYNSVSIDIVAENIEQVETLYTELAKINGVRMVL"
     gene            16135..16788
                     /gene="lipB"
                     /locus_tag="PXA71_001199"
     CDS             16135..16788
                     /gene="lipB"
                     /locus_tag="PXA71_001199"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HDL5105320.1"
                     /translation="MKLIIRQLGIQPYEEIWHQMQSFTDSRDGNTDDEIWLVQHPAVF
                     TQGSAGKPEHLLNPTNIPVVQSDRGGQITYHGEGQQIMYVLIDIKRLKSLGKEVSVRD
                     LVTALEQTVVQTLAEYGIESYPKADAPGVYVDGKKICSLGLRIRKGCSFHGLALNINM
                     DLTPFQNINPCGYAGLEMCQLSELVHRPDLRCEEVAPKLVAHFSTILGYNNQQIINN"
     gene            16803..17810
                     /gene="lipA"
                     /locus_tag="PXA71_001200"
     CDS             16803..17810
                     /gene="lipA"
                     /locus_tag="PXA71_001200"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HDL5105321.1"
                     /translation="MATSTAQTTATATVKKMSPFKMEKGVKYRDAAKTSVIQVRNIDP
                     DQELLKKPEWMKIKLPANSAKIDSIKNGMRRHGLHSVCEEASCPNLHECFNHGTATFM
                     IMGAICTRRCPFCDVAHGKPLPLDPDEPRKVAETVQDMKLKYVVITSVDRDDLPDRGA
                     AHFSATVREIKALNPHCKVEILVPDFRGRVEQAVAILKENPPDVFNHNLENVPRLYRE
                     VRPGADYKWSLELLKIFKQEFPHIPTKSGLMVGLGETNEEILEVMQDLRDHGVTMLTI
                     GQYLQPSRHHLKVERYVPPAEFDMFREEAEKMGFEHAACGPFVRSSYHADLQAKGELV
                     K"
     gene            17997..19100
                     /locus_tag="PXA71_001201"
     CDS             17997..19100
                     /locus_tag="PXA71_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5105322.1"
                     /translation="MKKLLLNSVFAATLLAFGATANAEIKTITDVLGREVKVDVPAKR
                     VALTFYYPDYIAVTGVENFDKVVGISREFWEKFNPGSWALFAEKMPNLKNIADLGYVN
                     SGTFSTEKTIALKPDVLVLPEIQYQALASEISRIEQAGIPVVVDFNKQTIENHTKSVR
                     VFGQLTGTEERAEKIAKEYEEGIADIQSCIDNAKVSKPKIYAEFGNKGPKEHSFTFGK
                     NMWGAIAETVRGDNISAPFVENWGQINPEQVLVSKPDVIMISGTELGNDTNPEIMSMG
                     INIEEADAQKRLKGFIERTGWKELPAVKSGRVYGLYHTASRSISDLASAQFMAKALYP
                     ELFKDIDPEKTYLDFHNNYLPITPKGTFFMQLK"
     gene            complement(19191..>19916)
                     /locus_tag="PXA71_001202"
     CDS             complement(19191..>19916)
                     /locus_tag="PXA71_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5105323.1"
                     /translation="LVVADKINLHFEQGKIYTLLGPNGAGKSSLLKTLFGEIAHQGTI
                     DFDGNKLTSSHLHSWRKEIGYMPQDTQVEASLSALEVILLGQLDSLNMYISDELLNEA
                     VDIMDKLGISHLAHQDIMRLSGGQRQMVMFAQVLLRKPHILLLDEPVSALDMYHQINL
                     LEYVNAYTRANNLITIMVLHDLSLAAQFSDSVMLLSEGKFKHKAELVICWNAILFRDS
                     IMSILRFYMMETARRLSARFANV"
BASE COUNT         5941 a         3836 c         4318 g         5821 t
ORIGIN      
        1 tatgcaatat ttgttatgct ttgtaaataa gaggaaagag atccattttg ggtagaaaat
       61 agctcattgc ttggaacttt aaatggttat ttcaccaatt caaccacttc cttcgtcaat
      121 ttcccaatct cctcccactt ctgttcctta atcagggatt tctccacaaa ccaagagccg
      181 ccgcaggcga ctacgttggg aatggcgagg tagtcgttga tgttttgtgg cgagatgccg
      241 ccggtcggca taatctgtaa gttgccgtaa gggccgagca gggctttaat cattttcacg
      301 ccgccactgg cttcggcagg gaaaaattta actgcttgta tgccaagttc gagggcggct
      361 tcaatcgcca tcgggttgtt cacacccggt gtaacaggca aacctaacac ttggcaatac
      421 ttaacgatag tcggattaaa acccggagtc acaatgcaat ccgccccagc gtttttggca
      481 gttaagactt gctctttggt cagcactgtg cctgctgcaa tcaatacttc cggatagttg
      541 gcttgcacta atttaattgc ctcttcagct gcttccgagc ggaaagtgat ttccaccacc
      601 ggcaaaccgt tttcggaaag ggttttcgcc agcggtaaaa tatcttctgc tttatccaaa
      661 gcaatcacgg gaacaacttt cagttgtctt aatttttcaa tgatttgttc ggtggtgtaa
      721 cgcatttcta gcctcattat gttgtattgc aagcggtcgc ttttgtaaaa aattttgcaa
      781 atttaaccgc ttgtcgttgt gctattgttg gtctaaatgg attgttcaaa ctgcgatttc
      841 aaatgagtag tggcggattt ggcaataatc gcccctttgt gctgaatgac gataccggca
      901 acggcatttc cttgttggca acaggtaacg acatctttac ccaataagta accgttaagg
      961 aagccggcat taaaggaatc gccggcggaa gtggtatcga ccaccttctc taccgcaaca
     1021 gttggcacaa aagtacgctc cccgttttgc aacaccgttg cccccagaga gccttgtttc
     1081 accacaatgg tctgaatgcc atattgagtg agacggtcaa aggtggcttg ctcattcaca
     1141 tcgccccaaa gcagttgctc gtcatcaaag gtcacgagag ctaaatcgac taattgcaac
     1201 agctcggcat agtgagcttg ggcagcagcc acactttccc acagtttcgg ccggtaattg
     1261 ctgtcaaagg cgattttcac cccttgtgtt ttgagctcac gcaactgtgc aatcagcaaa
     1321 gtgcggtcgt tttccggcaa gatggcaagg ctgataccgc tcaagtaaac catatctacc
     1381 tcgtttagtg ccgagagtgc tttgggatag ccggggtgtt gcaacaaata acgggcggca
     1441 gattgatttc gccaatagag gaacgttcgc tcgccctgtt tatccaactg aatcagatac
     1501 agccccggct ggcggtgctc gtcacgcaac acaaaatccg tgttgatatt atccacctgc
     1561 cacgccgcta acattccctg actgagctta tccgtgccga gagcggaaat ataacgcacc
     1621 tcaatctgtt caggcgaact cacccgagcc aaataggtag cggtgttgag cgaatcccca
     1681 ccataggttt ggtgcatctc cccaaacggc tccccgttta actcaatcat acattcaccg
     1741 agaatggcga gttttttcat aggaatacct tctaagttac acgccgctat aagcagagaa
     1801 tccgccatca acaggtaata caacgccatt gataaagctg gaataatggt gatccattaa
     1861 aaataggatt gcacctacca attcatcggc ttgtccgaaa cgtcccatag gggtattcgt
     1921 gaggatttta ttagctctag ctgttggcgt accatcggcg ttaaatagta gagctttatt
     1981 ttgattactc actaaaaatc ccggtgcaat agcattacag cggataccta cttttgagaa
     2041 ataaactgct aaccattgtg taaagttact gattgcagat tttgctccag aataggcagg
     2101 gattttagtt aatggagtaa aggcattcat actggatata ttaatgatat tagcgccctc
     2161 tttacccaac atatcttttg cgaaaacctg tgttggtaat agtgtgccta agtaatttaa
     2221 attaaataca aattcaatcc ctgctttatc taattcaaaa aaagattttg tattttccgg
     2281 taagttaata tcgtgaaatt cattatctgt cgttgctttt ggattattcc cacctgcacc
     2341 attaattaaa atatcacaag tgccaaaatc ttttagaatt tcatctcttg cctgttttat
     2401 gctttctaat tcaagtacat tagtttggta cgctttcgca atatagcctt catcggcaat
     2461 ttcagaagca aaattctgtg ctgcttctag attgatatcg agtagtgcaa cttttgcacc
     2521 tgtttttgca atttcttttg caaaataagc acatagcaca ccacctgctc cggtaataac
     2581 aacaacttta tctttaaaat tatgattttg ggcaatagac ataataagaa ctcctaagat
     2641 aaccaattca ttggtacgat aataatttca gggaaaagta ttaataagaa cagtattgca
     2701 gcatagacta gcaagaatgg atagatacct ttggttaatc tagcaatacc aatttttgct
     2761 ataccagaac caacatataa taccgttcca acaggaggcg taattaaacc gatagatagg
     2821 ttaattacca tcataatacc aaagtaagca atatcgatgt tatacgctct tagtaatggt
     2881 aatagtactg gtacaaaaat taatactgct gggattaagt ccattacaca gccgactaat
     2941 aataagaaaa tcataatgac gaacattagt acagtcgggc tatcggtaat acctttgata
     3001 aactcaacta actccatagg tatttgagca acagtaactg caaatgcaga tatcattgcc
     3061 gccgctgcaa caaacataac cattgcagtt gttttgatag tgcctaagaa aacatcttgg
     3121 attttatcta aggttaaccc ttttaagata atgctgatta ttgctgcata aattgctgct
     3181 acaactcccg cttctgttgg tgtaaagatg ccgcctctta aacctacgat aataataatt
     3241 ggaagtagca atggtaagaa tgctgattta aatgcagccc aacgttcttt acctgttttt
     3301 ttcggttcaa cggtttgttc ttcgtttcgg tataagaatt tccaaactaa ccataaacct
     3361 aaaaccatta aaaagcctgg aaccattcct cccataaata atttggtaat tgatgcaccg
     3421 gctgtaatac catagacaat cattggaatg cttggtggga taactacaga aataatacct
     3481 gctgcacaga ttaagcctgt tgaacgtgca acatcatatt ttcttgcaac catcatcgga
     3541 ataagaattg caccgagagc cgcggtatca gcaacagcgg agccggataa acctgcgaaa
     3601 attaagcctg aaataatcac tacatagccc aatccgcctt taatatggcc gaccatgctc
     3661 attgcaaaat tgataatacg ttcggaaata ccgccgtgtt tcataatttc accggtcagc
     3721 ataaaaaacg ggatagccat cagcggaaaa ttatttgtac ccattacgaa attctccgtg
     3781 attaattggg catcaaacat atccattttc catagcataa aactggcact aagtagcata
     3841 gagagagcaa cgggcactcc taaaaagaga aagaggaata gacttcctaa aaatagccat
     3901 aacatattta tttctcctct ttaatgaaag ctagccgaat atgtttccat aaatttgtga
     3961 atacaatagc gaaataggag atagatgaaa taactgctgc aaaatataga aacgcagatg
     4021 aaatttcagt tgctggcatt ttttgtgtgt atgtcaataa cattaactgg tatgcaccgt
     4081 aagtaataaa tgacagtgca actaagacta aaatatcagc aaagaacagt aagtacattt
     4141 gtacttttgc cggtagtgca gaaacaacaa tatcaacggt gaggtgtccc ctttcctttg
     4201 caacgaggat tattcctaga aagatcatat agacaaagca gattctggcg aattcctcag
     4261 accaagctat tccggagtca aaaaaatatc gtaaaaccgc attaaaaaag actaggataa
     4321 tcattgtaga tagagcaatt atcgcaagga gtttgagagt tctatctaat gctgtagaaa
     4381 tttgcataaa tttctccttc ttcatttaga tgggcgacct cttttatccg gtcgcctcgc
     4441 ttattgctta tttggctgcg tggatttttg aaataacatc tttagcccaa tcatatttct
     4501 gatagaaatt ttgataaagc gtttcggatg cttttaacat atcagcttta aattgttcac
     4561 tcggaacaat gacttctttg ccatttttgt ggaagaaatc ttttacatct tgttccatct
     4621 tcatcgctaa ttcccactct ttttcttggt agagttttgc tgcctctaag aagattgtct
     4681 gatcttcttt agacatttta ttccaagttt tcaaactaag ttgtagtaag ccaggtgaga
     4741 aaatatgatt agattcaata atatattttt gcacctcgta taaaccagaa tctttaatta
     4801 acatatatgg attttcttgc ccatcaatga ctttttgttc tagtgcggta aatacttcac
     4861 ttaaaggcat actttgaggg ttaatatgca ttgcttttgc ccagtccaca aacaacgaat
     4921 ttagtggaac ccttaatcgc aaacctttaa atccatcaaa attctcaact tttttattgg
     4981 aagagataac acggaagcca ttcataccat acgctagtaa tttaatgccg tacttctcca
     5041 ttttttcccc gatttcttga gcaataggag attctagaac tttcttagct tcggcattat
     5101 ctttaaatag atatggccac tcccatacgc caaaaattgg atcaacattt tgtagtaata
     5161 aacctgtaat gccaccttca atcgtgccat tacgcaaacc atttacaatt tgatcttctc
     5221 ctcccaactg gttatttggg aaaatacgga tttcgtagcg tccttctgtt ttttcttcaa
     5281 tggttttttt gaagtattcc tgcaatgcga tatttgatgg atgaacatct gaattatagt
     5341 gaccaatctt aatgatagtc ttcgcaaatg ccgaaccggt gaacatcagg ctagaaatta
     5401 atagagcttt agtgaaagtt ttgagtttca tagttattac ctcgtaggtg agttagtatt
     5461 taaaatacag cgatgatttt taagtaatca tcaggattag ctgagagttc ttcgatatag
     5521 tgaggtattt catcaaatgt aattacctta ctaatgatat cttttggttc aattcttctt
     5581 gatgccagaa gctctaatgc ttcttcaaat gcccccttgc ttgttcttgc cccataaata
     5641 ttaagttctt tgaaggtgat taaattagtt ggtaatggtg tttctgtttt cggccatccg
     5701 gttaaagcaa tacgtccagc aaaagaggtg tatttaagcg tattttgtac tgcgacattt
     5761 gctcctgacg cttcaataac cacctctgcc attcttccat tggtaattga tttaatagct
     5821 tcaagatcgt tttcttttgt tggattaatt gtgtgtggaa taccaataga ttttgcgtaa
     5881 tccaatcgct tatctaaaat gtcaattaaa atcggcgtcg ctccataagc tttggcaacc
     5941 aatgcagcca ttagcccaat tgcccctgct ccaatgatag caacatgttc accagctttg
     6001 acttttgttc tatgaattgc gtgtaaggaa atagttaagg gttctgctaa cgctaattcg
     6061 tgtattggca tatcaggtgt tttgattatc atatgggctg gatgtctaac aacctcttgc
     6121 attgccccat caatatgtac ccccaatact tttagagatt cgcaacaatt tgttctacca
     6181 atggagcagg gatagcaatg tccacaatag atgtaaggtt caatgatgac acgatctcct
     6241 acattaatat tatttggcat acctttacca gactcaatta ctgtgccaac gatttcatgc
     6301 cctaaaattc taggataagt aacaagtgga ttagtgcctc taaatgctcc aatatcagag
     6361 ccacatatcc ccataccttc tactttgatt agcacatcat tttcaccttt aacaggataa
     6421 gaaacggttt gtataccaac tttattaggt tctacaagac atactgattt gagtggtttt
     6481 tccatgattt tgtccttttt tgataaagtt aatcgacatt ttgtagtgtc aatggtattt
     6541 tatgcacaga tactaacacc aaaaaacaag tttggcattc caatttttgt gattttgtga
     6601 acctgatcac aaaaatgaaa ttttggaatt ccaatttcgt gaggatttat gcaaaatagt
     6661 tccagaactt acactaaaat aggaaaaatt ctcaaagagg aaattgctca aggaaaatac
     6721 agagtaggag ataagttacc tactgagaga gatatttctg aaagatttga agtgagtaga
     6781 actatcgtaa gggaggcgat agtgatgcta gaagtagaaa agcttattga ggtaaaaaaa
     6841 ggatcgggcg tgtatgtcat tagagtcccg gagctttttc cagaagattt tccagaagag
     6901 aaagataatg agctaaggga tgttgggcca tttgaactac ttcaagcacg acaattatta
     6961 gaaagcagta ttgctgagtt tgcagcacag caggctacca aacaagatat acaagtactt
     7021 cgtaacatat tagaaagtga gaagaaactt ttgttagaga agatggatga ctacagtgca
     7081 gataaggaat ttcatcttgc attagctcat atgacgggta acgatgttct gattcaatta
     7141 caagaacagc tttggcgata ccgctttaat agtgcgatgt gggctcagct acactccaga
     7201 attttacagc atgatcatca ccacttgtgg atagaggatc atgagcgaat tttaaatgca
     7261 atacagagaa aaaatcctgc attagctcgt aaagcaatgt ggcaacatct agaaaatgtt
     7321 aaaactaaat tgcttgaatt gtctgatgta gaggatccta aatttgatgg atatctattc
     7381 aatgtaaacc ccgttgtagt aggtatctaa aacctaaact acacaatgag gagtttacta
     7441 tggaacaagc atggcgttgg tatggaccaa acgatccggt atctttagat gatgtaagac
     7501 aagcaggggc aacggggatt gtgacagcgt tgcaccatat tcccaacggg caggtgtggt
     7561 cggttgagga aattaataaa cgtaaggcat tattagctga aaaagggctg gtttggtcgg
     7621 tggtagaaag tgtgcctgtt cacgaagaaa tcaaaactca aacaggcaac tatcagcaat
     7681 ggattgataa ctataagcaa accttgcgta atttggcaag ctgtgggatt gatacggtgt
     7741 gctataactt tatgccggtg ctagattgga ctcgtaccga tctggagtat gaaatgcctg
     7801 atggctcaaa agcattgcgt tttgaccaag tggcgtttgc ggcgtttgag ttatatatct
     7861 taaaacgccc gggagcggaa gccacttact catcagcaga acaagccgaa gccaaagcct
     7921 attttgagca gatgagtgac gctgatattg caaaattaac caaaaatatc attgccggtt
     7981 tgccggggtc tgaggaaggc tatacgctcg aagaattcca agcacagctt gaccgctatc
     8041 aagggctctc ggctgaaaaa ttccgtaccc atttagccta tttcttaaat gagattgtgc
     8101 cggttgcaca agaggtgggc attcgtatgg cgattcaccc tgacgatccg cctcgcccga
     8161 ttttaggctt gccacgcatt gtttcaacca tagaagatat gcaatggttt gtggaaactc
     8221 aaccgcttgc agccaatggc ttcacgttct gtaccggttc atacggcgta ttagccgaga
     8281 atgatttggt caaaatggca gagcagtttg cagatcgcat ttattttgct cacttacgag
     8341 ctacccaacg tgaagaaaat ccacaaagtt tccacgaagc ggatcatctt gccggtgatg
     8401 tcgatatgtt tggcgtggtg aaagcattac ttaccgaaga gtatcgccgc aaggcaaatg
     8461 gcgatcaccg attaattcca atgcgtccgg atcacggcca tcaaatgctc gatgatctga
     8521 agaaaaaaac caacccaggc tattctgcga ttggtcgttt aagaggatta gcggagttcc
     8581 gtggattgga gttggcactt aagaaagtct attttaacga ttagccttat ttattataat
     8641 gccctctact gtagagggca ttttatagtt tgatatgttc aaaaaatatt tcggcgaaat
     8701 aatccttttt ctcgttacct ttattgctgc agcggggtgg tttttctcta aacacgcttt
     8761 agttggatta ccgcctattg gctttatggg agggcgtttt atattagcct ctttgattct
     8821 tctgcctttt tcttaccgag agctgtatcg tttagataag gttcaagtta aatattcggt
     8881 gattaccggt cttacttacg gaatttatac tattttttgg gtattggggc tggcttttag
     8941 tacagtgttt ggtgaagggg cttttttggt gagccttgcg atgctgattg ctcctttgct
     9001 ctcttggttg atattcaaac atacgccacc gaagattttt tggttagcct tacccattgc
     9061 attaagtggg ctttactttc tttctgcgga gaaaggcatc tttcattttt ccttaggcag
     9121 tacgattttt ctggtgtcat cagtgtttgg ggcgttatat tttgtgttaa ataatcaata
     9181 cgccaaacaa gtctcattgt ttccattaat tactatccaa ttggcgatag tcggtgcggt
     9241 ctgtagcttg tattcctatt ttatggaaag ttggcatttc ccgattctca ccgaagtgtg
     9301 gctctggttt gccgcaagtg tattgattgc gacaaattta cgttttttaa tgcaaacact
     9361 ggggcaaaaa tattgccata ttggtacttc tgcactcatt atgttacttg agccggtttg
     9421 gacattgtta ttgagcgtga tgttattggg ggaacaactt agtgcgacaa aatggctagg
     9481 ttgcagcttg attttgatag cattgattat ttatcgactc cctattctac gactcaaaaa
     9541 ataggtaaaa caaaagcaaa tatgccatag tattggaagc agttaggcat tttagagtaa
     9601 gtaacaagcg gtcatttttg caaaaaatct tgcaaaaatg accgctttct ttcttttatc
     9661 cgttcaatct atgttaaaat tctacatttt tataagatga gagagagaaa cgtggaacag
     9721 aatttagtcg aatttttaac caaaacctta gatgatttaa aggcacaaga tattttagcc
     9781 attgatgtga aagggaaatc tagcattact gatacgatga ttttagccac cggtacatcg
     9841 agccgtcacg ttgcttcaac ggcagagcgt ttaattacgg aagcaaaaca ggctgggttc
     9901 gaggtatttg gagatgaagg taaagcagtt gccgattgga tcgtggtcga ttttgggaag
     9961 gcaatggttc acttgttgca atccgatagc cgtgagatgt accaattaga gaaactttgg
    10021 gcgtagcagt tcaataagga acgacaagcg gtgatttttg caacattttt tgcaaattaa
    10081 accgcttgta agtgaaagag agatgaaaat tcaattaatt gcggttggca ctaaaatgcc
    10141 ggcgtgggta acgacagggt ttgaagagta tcaacgccgt tttccgaaag agatgccgtt
    10201 tgagttggtg gaaattccgg caggaaaacg gggcaagaat gctgatacta aacgcattct
    10261 tgagcttgaa ggcaaagcaa tgttggcggc agcgggcaag gcaaaaatcg tgactttgga
    10321 tattccgggc aaagcgtgga caaccgagca gttagccact cagttagagg gctggaaaaa
    10381 cgatgggcga gatgtagcgt tattgattgg cggcccggaa ggattatcac cggaatgcaa
    10441 agccgctgcc gagcagagtt ggtcgttgtc gcctttaacc ttacctcacc cactggtgcg
    10501 ggtggtggtg gcggaaagtt tgtatcgggc gtggtcggtt accattaatc acccttatca
    10561 tcgagagtag tgagtcattt tagatagtgt tatatgtttg gtaaattagc aaaattcaca
    10621 gcttcaaacc agcgagaaaa ggtgcgagac gggcaggcag aaagcaatct gtatgcccgc
    10681 cgtgccttag ttgcgtttct gggggtgttg gcgttaagtg gtgttttatt aaccaacttg
    10741 tatcacttgc aagtggtgaa ttatgaggac taccaaaccc gttcaaacgg taaccgcatt
    10801 aaattgttgc ctgtgccacc ggctcgaggc ttaatttatg accgtaacgg taaagtattg
    10861 gcggaaaatt taacctattt cgggctgttt attgtgcctg aaaagacgga aaacattgag
    10921 cagactttaa ccgagttgaa ggatattgtt gggctgacgg acgaagatat cgagaattat
    10981 cataaagaga aaaaacgcag ttctcgctat accccaatta tgctcaaagg caatttgaat
    11041 gaggctcaga tggctcgttt tgcggtgaac caataccgtt ttccaagttt agatgtgcag
    11101 gcgtattata agcggaatta tccttacggc gagcttttaa cccatattat cggttatgtg
    11161 gcgaaaatta acgaaaacga taagaaaaag ctgcaagaag ccgggaaatt cggcaattat
    11221 gccggttcgc acgatatggg gaaattgggg attgaaaaat tctatgaaga tcagctccac
    11281 ggtgtcaccg gttttgaaga ggtagaaatt aataaccgag ggaaagtaat ccgtaaattg
    11341 cgtgaccaag caggggttgc cggtagcagt attcgcttga gtattgatgt ggaattacag
    11401 caatatgtga tgtcgttaat tgctaagcat aaaggggcgg tggtggtgct tgaccctcgt
    11461 gatagcagta ttttagcgat ggtctcaaac ccaagttatg acaataattt atttgtgggc
    11521 ggtatttcag ggcaggatta taaagcatta ttggacgatc caacccgacc actttatagc
    11581 cgtactacac aaggcactta tccaccggct tcaactatta agccatttat ggcggtggca
    11641 ggtttggaag agggaatgat taccccttct accaccattt cagaccccgg ctattggatt
    11701 ttgcccggca ctacacaacg ttatcgagat tggaaacgta gcggacacgg tgcaactaat
    11761 gtgaataaag caattaccga atcgtctgat acctttttct atcaattagc ctataaaatg
    11821 gggattgata aaatgtcgga ttggatgaaa aaattcggtt tcggagtgaa aaccggtatc
    11881 gatatttttg aggaatccgc aggggtaatg ccaacccgtg aatggaaaca aaaacgctat
    11941 aaaaaacctt gggtgcaggg cgatactatt ccggttggga ttgggcaggg ctactggatt
    12001 tcgaccccgt tacagttggc gaaagccacg gcggtgttaa tcaacaacgg gcgggtgaat
    12061 acaccgcatt taatgcttga agtgcaaagc agtaattcgg ttacgccgta tcaagaccca
    12121 ttgttgtatg aagatattaa aggcgtgccg gatgtctatt ggaatttagc aaaacaggga
    12181 atgtataacg taaaccacgc cgcaaacggt acggcacgaa aagtgtttgc cggtgcattt
    12241 tatcattcag cagggaaaac cggtacggct caggtgttta acttaaacgg taaaaattac
    12301 gataaaaatg cgattaaaaa agagttgcac gaccacgctt ggtttatcgg ctatgctcct
    12361 tatgaacaac ctaaaatagt ggtggcatta attttagaaa atgcaggcgg tggtggtagt
    12421 gccgcggctc ctgttgctcg tcagattatg gattatgctt tgagaaaagg cattggtgaa
    12481 cagccggatt cgcaaaattc tgagcaaaat aaaccgcttg tcacagagga acatcatgaa
    12541 tagtggcttt aaaaaacttt tctggaaaat tttttcactc gatctccttt tattatcagg
    12601 attattagct attaccggtt atggtttatt agtactatat agcgcaagcg gtgcaaatga
    12661 gcggatgttt accagtagac tgattcaagt ttcgctaggg cttgggctaa tgttgataat
    12721 ggcaatggta cctcctcgct tttatcaaaa agtttcgcct tatctgtata ttttctgtct
    12781 gatattattg attttggtgg atttggtcgg cgaaaccagt aaaggagcgc aacgttggtt
    12841 gaatttagga tttgttcgct ttcagccttc tgagattgcc aagctcgctg tgccactgat
    12901 ggtagccact tatttaggta agcggccgct tcctccgagt tttaaagata cttttatcgc
    12961 cttagccatt attattgtgc caaccttatt ggtggcaatt cagcccgatt tgggaacatc
    13021 tattttagtg tgttctgccg gtatttttgt tttatttttg gcagggctaa gttggaaatt
    13081 aattggcgca ggtgtggtgt ttttagccgg ttttatcccg ataatgtggt ttttcttaat
    13141 gcacgattat caaaaaaccc gggtgatgac cttaattgat cctaataaag acccgttggg
    13201 tgccggctat catattattc aatccaaaat tgcgataggc tctggtggca ttaatggaaa
    13261 aggctggatg gaaggaacgc aatcccagct tgaattttta cctgaaccgc ataccgattt
    13321 tatttttgca gtgttaagcg aagagcatgg tatgataggt gtgctgattt tattagcgat
    13381 ttatttgttt attattgccc gaggtttagt gattggcaca aaatcggatt ctgctttcgg
    13441 gcgtatatta tcaggtggta cagcccttct attttttgtt tacgtttttg taaatattgg
    13501 tatggtgagt ggtattttac ccgtagtcgg tgtaccatta ccgcttttca gttacggcgg
    13561 aacctcctat gtgacgctga tggcggcatt tggtttgatg atgtcaacct atgttcaccg
    13621 taagcgtgta ggtagtaata atccttatga taaactgaaa taaattaaac ttttgctttt
    13681 ttgcggtatc aaaaagcagt gaaacgatca tcgttacaaa caataacgac atccacatag
    13741 aggaaaaaac ttatatgaga ttaggtaaaa ttgtaaccct gttgttagct ggatttctga
    13801 catttagttc attaaattct ttggctgcga caaagaatac aaaagctaaa tcgagtattt
    13861 tagccaagaa gcaagcaact tctaaagcaa taaaaaaagt aggtatttct aaagttaaga
    13921 aaaaagaagt agtggctaaa gctacaaaaa agaaaacaat ttctactgtt acaactaagc
    13981 cgattaaatc tacaaaaaag ctggctcgca aggttgtcaa gaaaacggta accgctaaga
    14041 aaaaattggt aaaaaagcag cataagccac tggtcaaaaa acatttccag actggtgttg
    14101 ccagctatta tgcaaattac tttaatggtc gccgaaccgc taatggggag actttcaata
    14161 acgcaaaaat gacggctgca catcgaactt taccatttgg tactttaatt gaagtgacga
    14221 atttacgaaa tggtcgttct gtggtggtgc gtgtaaatga tcgcggacct tatgctcacg
    14281 cacgggtctt ggatttatca tcagccgcag cgaaaaaaat cggtatgcac cattcgggga
    14341 cggcaagagt gaaaattgcg attgttgata agtcaaaatt gggatcgact aatcagtttt
    14401 atgtaatgaa ttaatttaag agggaatatg aaaaaaacat tagtgaaagc gatgagcgtg
    14461 gtaggttttg cggtttcaag cattgcctat gcggatttaa acactaactt caatttatcg
    14521 gcaccccaga tcaacgcaca aacctatatt ttgatggatt acaactccgg tgaagtttta
    14581 gtgagcctaa atccggatca acgtcaatat cctgcatcat tgaccaaaat gatgactagc
    14641 tacgtagttg gtgaagccct aaaatcggga aaagtgcaaa acagtgatat ggtgatagtc
    14701 accgaaaatt cgtgggcgca aaaattcccc ggctcttcat taatgttttt agatttaaac
    14761 agcaaagttt cagtaggtga gttgatgaaa gggctgatta tcgtctcggg taatgatgcc
    14821 tctgtggcgc ttgctgaaca tgtttcaggc tcacaagcgg cgttcattaa tgaaatgaac
    14881 aaatatgccc aacagtttgg cttaaagaat actcacttta ccactgttca cggtttagat
    14941 gaccctgagc aatattcttc tgctcgtgat atggcgatta ttggttcgca tattattcgt
    15001 gatcagccgg aagagtataa aatttatgcg gaaaaagagt tccaatataa catcaaaaaa
    15061 ccacaaccaa accgcaacgg attattgtgg gataaaacca ttcaagttga tggtatgaaa
    15121 acagggcata ctgataaagc cggctataac ttagtcgcat cagcaattaa cccgaataca
    15181 cgtttaattt ctgtagtgat gggcgtgcca acttataaag ggcgtgaagt ggaaagtaag
    15241 aaattactgc aatggggctt tgcgaacttt gaaaccatta aatctattcc ggcagctcaa
    15301 tcggtggcag agcaaagtgt ctattacggt gaagtcaata aagtacaatt aggctcggtg
    15361 caagatagct ttgtgactat cccgaaaggt cgctcggcag atttaaaagc ccgttatgag
    15421 ttagagaaga aaaacctcga agctccttta gcaaaagggc aggtagtggg taaaatgatc
    15481 taccaacttg acggcaaaga tgttgcaagc actaacttac aagtcttaca agatgtaccg
    15541 gaagccggta ttttcggcaa agcgtgggat tggattgccc ttactgtgaa gagcttgttc
    15601 gattaatctt gttatttgcc tttttatccc catctaggga gcaatgcaag cggtgtgatt
    15661 ttgcaaaaaa tttgcaaaat ttcaccgctt accgttttag atatgaatgt ataaaaagtg
    15721 tagtggcgaa aaatttttcg cccctcgaag aaagaataga agaaggatca aaaatgtctc
    15781 aacccaaagc gataaactta caagatttac ctcaagccaa attaaaagat ctgctagagt
    15841 ttccgtgcca tttcacgttc aaagtggtgg gagcaaaccg agaagatttg gttgatgatg
    15901 tggtagtggt cacgcaaaaa tatgccaaag gcgattacaa tccacgtcag caaaaaagct
    15961 caaaaggtac ctataattcc gtttcgattg atattgtggc ggaaaatatt gagcaagtag
    16021 aaactctcta cacggaactt gccaaaatta atggcgtaag aatggtatta taatgcgagg
    16081 ggcgaatgac attcgccctc aatttttcaa taaagcgatg ttggaaaata gaaaatgaaa
    16141 ttaataattc gccaactagg cattcagcct tatgaagaaa tttggcacca aatgcaatct
    16201 ttcacagata gccgtgatgg gaataccgat gatgagatct ggctggttca gcacccggct
    16261 gtgtttacgc aaggatcggc aggcaaaccg gagcatttgt taaatccaac caatattccg
    16321 gtggtgcaaa gcgaccgtgg cggtcaaatt acttaccacg gcgaggggca gcaaattatg
    16381 tatgtgctga ttgatatcaa acggctgaaa tccttgggta aagaagtgtc ggttcgagat
    16441 ttagtgactg ccctggagca aaccgtggta caaacgttgg cagaatatgg catagaaagt
    16501 tatccaaaag ccgatgcacc cggggtgtat gtggacggca agaaaatctg ctcacttggt
    16561 ttacgaattc gaaaaggttg ctctttccac ggtttggcat taaatatcaa tatggactta
    16621 acgccttttc aaaacatcaa tccgtgcggt tatgcagggc tggaaatgtg ccaattaagt
    16681 gaactggttc atcgccctga tttgcgttgc gaagaggttg ctccaaaatt agtggctcat
    16741 ttcagcacaa ttttaggcta taataaccaa caaattatta acaattagga taaaacacag
    16801 taatggctac atcgacagct caaacgacgg caactgctac agtgaaaaaa atgagccctt
    16861 tcaaaatgga aaaaggggtg aaatatcgtg atgccgccaa aacctctgtg attcaggtgc
    16921 gtaatatcga cccggatcaa gaactcttaa aaaaaccgga gtggatgaaa atcaaactgc
    16981 cggcaaattc ggcaaaaatt gatagcatta aaaacggtat gcgtcgccac ggcttgcact
    17041 cggtgtgcga ggaagcctct tgcccgaatt tacacgaatg ttttaaccac ggtactgcaa
    17101 cctttatgat tatgggggca atctgtaccc gtcgttgccc gttctgtgat gtggcacacg
    17161 gcaaaccgct tccgcttgac ccggacgaac ctcgcaaagt ggcagaaacg gtgcaagata
    17221 tgaaactcaa atatgtggtg attacctcag tggatcgtga tgatttgccc gaccgtggtg
    17281 cggctcattt ctctgcgacc gtgcgtgaaa tcaaagcctt aaatccgcat tgtaaggttg
    17341 aaattttagt gcctgatttc cgtggacgtg tggagcaagc ggtggcaatt ctcaaagaaa
    17401 atccacctga tgtctttaac cacaacctag aaaatgtgcc acgtctctat cgtgaagttc
    17461 gtccgggagc ggattacaaa tggtcgttgg aattattgaa aatcttcaag caagagttcc
    17521 cgcatattcc gaccaaatcc ggcttaatgg taggcttagg tgaaaccaac gaagaaatct
    17581 tggaagtaat gcaagattta cgagaccacg gcgtgacgat gctcaccatc gggcaatact
    17641 tacaaccaag ccgccaccac ttaaaagtgg aacgttatgt gccaccggca gagtttgata
    17701 tgttccgtga ggaagctgaa aaaatgggct ttgaacacgc agcctgcgga ccgttcgtgc
    17761 gttcttctta ccacgcggat ttacaagcga aaggcgaatt ggtgaaataa aatcgataag
    17821 ggcgaatatt atttgccctt tgtttttgtg gtttgcaaag ttttagcaaa attaaaccgc
    17881 ttgtaatctc ttctaattta ctcttctata gataatttcg ttgttgcgaa ttattttcat
    17941 tgactatttg ttatagaaag ttacaattca actttccatt tctttttgga gttccaatga
    18001 aaaaattact attaaacagc gtatttgctg ccacattgct tgcttttggt gcaactgcca
    18061 atgccgaaat taaaaccatc actgatgtat tagggcgtga ggtcaaagtt gatgtgcctg
    18121 ctaaacgtgt tgcactgact ttctattacc ctgactatat tgcggtaacc ggtgttgaaa
    18181 atttcgataa ggtagtaggg atttcacgag agttttggga aaagttcaac ccaggcagtt
    18241 gggcattatt tgcagaaaaa atgccaaatc taaaaaacat tgccgatctt ggctatgtga
    18301 atagtggtac tttttcaaca gaaaaaacca tcgcattaaa accagatgtg ttagtgctac
    18361 ctgaaattca atatcaagcg ttagccagtg aaatttcacg cattgagcaa gctggcattc
    18421 ctgttgtagt agatttcaac aagcaaacta ttgaaaacca tacaaaaagc gtgagagttt
    18481 tcggtcagct tacaggcact gaagagagag cggagaaaat tgccaaagag tatgaagagg
    18541 gcattgctga tattcagagc tgtattgata atgcaaaagt aagtaagccg aaaatctatg
    18601 ctgaatttgg taataaaggc ccgaaagagc atagttttac ctttggtaaa aatatgtggg
    18661 gagcgattgc cgaaacggtg cgaggcgata acattagtgc cccgtttgta gaaaactggg
    18721 ggcagattaa ccctgagcag gtgttagttt ctaaacctga tgtgattatg atttcaggta
    18781 cggaactagg caacgacact aaccctgaga ttatgtcgat ggggattaat attgaagaag
    18841 ccgatgctca aaaacgctta aaaggcttta ttgagcgtac aggttggaaa gagttacctg
    18901 cggtaaaatc agggcgtgtt tatggtttat atcatacagc ttctcgctca atttcagatt
    18961 tagcgagtgc tcaatttatg gcaaaagcac tttatcctga attgtttaaa gatatcgatc
    19021 ctgaaaaaac gtatttggat ttccacaaca actacttacc aattacgcca aaaggcacat
    19081 tctttatgca actgaaataa aaataacaag cggtcatttt gcagatttat tttgcaaaat
    19141 gaccgcttgt attcgctttt actatttgcg gttcaaacag caatcaatat ttaaacattt
    19201 gcgaagcggg cggataatcg gcgagccgtt tccatcatat aaaatctcaa tattgacatt
    19261 atagagtctc tgaataatat cgcattccaa catatcacaa gctctgcctt gtgcttgaat
    19321 ttcccctcgc ttaatagcat cacactatcc gaaaattgag ccgcaaggct taaatcgtgc
    19381 agcaccataa ttgtaattag gttattcgct cgagtgtagg cattcacata ttcaagtaag
    19441 ttgatttgat gatacatatc caacgcactg acaggctcat ctagcagcag aatgtgtggt
    19501 ttacgtagca atacttgtgc gaacattacc atttgccgtt gcccgccact tagccgcata
    19561 atatcttgat gagctagatg tgaaataccg agtttatcca taatatcaac ggcttcattg
    19621 agtaattcat cgctaatata catattcagg ctatcaagtt gccctaataa aataacctct
    19681 aaggcactga gtgaggcctc tacctgtgtg tcttgtggca tatagccaat ttctttacgc
    19741 caactatgca agtggcttga ggttaattta ttaccgtcaa aatcaattgt gccttgatga
    19801 gcaatttccc caaatagagt tttaaggaga gaagatttac ccgcaccatt tgggccaagt
    19861 aaagtataga tcttgccttg ttcaaaatgt agattgattt tatcagccac cactaa
//
LOCUS       DANLRW010000040        19624 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.040, whole genome shotgun sequence.
ACCESSION   DANLRW010000040 DANLRW010000000
VERSION     DANLRW010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19624
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.040"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            114..2723
                     /gene="adhE"
                     /locus_tag="PXA71_001203"
                     /gene_synonym="adhC"
     CDS             114..2723
                     /gene="adhE"
                     /locus_tag="PXA71_001203"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HDL5105324.1"
                     /translation="MAKNTQPFDAQAEVNELVEKGLKALDEFRKLNQEQVDFIVAKAS
                     VAALDKHGILAMHAYEETGRGVFEDKATKNLFACEYVVNNMRHLKTAGVISEDDVTGI
                     TEIADPVGVVCGITPTTNPTSTTIFKALIALKTRNPIVFAFHPSAQQSSAHAAQIVRD
                     AAVAAGAPENCIQWITQPSMEGTSALMKHPGIATILATGGNAMVEAAYSCGKPALGVG
                     AGNVPAYVEKTAKLKQAVYDIVMSKSFDNGMICASEQAAIVDKEIYAEFIKEMQSYGV
                     YLVNKKEKALLEKYIFGIDKAKDENCSGAKLNSAVVGKPAAWIAEQAGFKVPEKTNIL
                     LAECAFVGEAEPLTREKLSPVLALLKSDSTEHGLELSEAMVNFHGLGHSAAIHTENKA
                     LAKTFGERVKAIRVIWNSPSTFGGIGDVYNSFLPSLTLGCGSYGKNSVGNNVSAVNLI
                     NIKRVGRRRNNMQWFKVPSKIYFERDSIQYLKSMHDVHKVMIVTDRSMVDLGFVDRIT
                     EQLRQRRNQVMIQFFTDVEPNPSLQTVQRGTELMRSFQPDTIIALGGGSPMDAAKIMW
                     LFYEQPEVDFRDLVQKFMDIRKRAFKFPQLGRKAKFVGIPTTSGTGSEVTPFAVITDG
                     DIKYPLADYSLTPTIAIVDPALVMSVPSHVAADTGLDVLTHATEAYTSILANDYTDGL
                     ALQAIKLVFENLEKSVKEFDETAREKMHNASTMAGMAFANAFLGICHSMAHKIGGKFH
                     TIHGRTNAILLPHVIRYNGTRPTKVATWPKYTNYVADVRFQDIARMLGLPAETPEQAV
                     EAYAQAVHDLAVRCGVKMSLREQGVDEQAFLNARRELALHAFEDQCTPANPRLAMIED
                     MEAIMTKAYYGKE"
     gene            2870..3766
                     /locus_tag="PXA71_001204"
     CDS             2870..3766
                     /locus_tag="PXA71_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HDL5105325.1"
                     /translation="MQITILDGGISRELMRRNAPFHQPEWSAAALYEGPHFVQAVHED
                     FIAHGAEVITTDSYAVVPFHIGEKRFAADGKMLADLAGRLAKQAVKNSGNIATQIAGS
                     LPPMFGSYRADLIQMERFAEVAQPLIDGLSPYVDIWLCETQSAIIEPISIKALLPKDN
                     RPLWVSFTLTDDEPTTEPQLRSGESVKQAVEEMVKLGVQAILFNCCQPEVIGEALSVT
                     QKTLAELKATHIRTGAYANAFAPQPKDATANDGLDEVRQDLTLEAYLGWAKKWTEQGA
                     TIIGGCCGIGVEYIETLAKNLK"
     gene            3776..5185
                     /locus_tag="PXA71_001205"
     CDS             3776..5185
                     /locus_tag="PXA71_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDL5105326.1"
                     /translation="MSNKKIGLISLTALVLSSMIGSGIFSLPQNMAAVAGAEAITIGW
                     LITGVGIIFLGLSFFFISRLRPDLDGGIYTYAREGFGELMGFMSAWGYWLCATIGIVG
                     YLTVAFEGLGVFTDNPNTVIFGQGNTLASFIGSSIIVWLVHALIAGGIKEAAFVNLIA
                     TFVKVAPLILFIGLGIWYFDVDLFNSDVKATALNNSVSDQVKSTMLITLWVFTGVEGA
                     SVLSAHAKKRSDVGLATVLGIIIALALYVAITILSLGILPRETIANMANPSMGPLLDA
                     MMGPTGKVIITACLIVSVLASYISWTMYSAEVPYRGSKNGAFPKILDKVNKNGTPINS
                     LWFTGFIVQFCLVLVFVFEQSYNTLLLISTSMILIPYFLIGAYLFKLAIQTNATWYIK
                     LTGFMAALYGLWIVYAAGLEYLLLSVVLYVPGILLFLYSNYKFNGRLTLSTAEKVILI
                     VLLVIFGYAVIELPALLAA"
     gene            5292..6515
                     /locus_tag="PXA71_001206"
     CDS             5292..6515
                     /locus_tag="PXA71_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF711 family protein"
                     /protein_id="HDL5105327.1"
                     /translation="MQTYQHKALCRVRTITLFLSLTKDKLQWETALNAAKAEFDLLVP
                     AIQTQGYHIQSIRIVTNSFGEYLDLTNIETAKQDLAYLKQLLTQLNDSGLRIRFAIGE
                     AKTPHELALLPELILNYGDLSNACVNIEPDEFGILDNETILQSAQIIKQIAEITPRGE
                     GNFNFTVNFNCKPFIPYFPASYHSSKLPNSFVIGLETPDLLVAVLKELKASPHNDFYR
                     QCYETMSQALQYHVDEVLEAVKSVQHKLQFAFAGIDSSAAPSKNCASMTEVYELMGVP
                     FFGAAGTVEASSLLTKVFKSIKHVPLVGFSGLMLAVTEDLGLAAGTHKAQFDIRALLT
                     YSAVCGIGLDTVPISNEATVEQIAALMRDTGTMAFRLNKPLTVRLFPIPNKSAGEVTE
                     FESDDLCNCRILAVP"
     gene            complement(6553..7749)
                     /locus_tag="PXA71_001207"
     CDS             complement(6553..7749)
                     /locus_tag="PXA71_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDL5105328.1"
                     /translation="MKQVIRFIVFSTLSLFSFSTFAKTIVAIDAGHGGKDPGAIGKNL
                     GILEKSVTLAISKELKALLDADPNFKAVMTRSGDYFIQLPQRTEIARKHRADLLVSIH
                     ADSSPRGDSLKGASVWVLSNSRASDEMGKWLEDHEKQSELLGGAGSVLSSNNERYLNQ
                     TVLDLQFSHSQRAGYELGKSILAKMSNVAALAKSSPQHASLSVLRSPDIPSVLVETGF
                     LSNSTEEAKLASANYRKQVARAIYNGLVAYRAKNAVASSSVSKKSDKEDKQNKKEEKT
                     AKADLTKKPASEKQEKNTQSDKTKLKEKSKKEDKKEDSAKTNKKKEQQLKEKTALEKD
                     QKNQSKKSDSQREIKVSNSGYHIVQQDETVYSIARAYGTTPQKISELNNLKNYQITVG
                     KKLKVK"
     gene            complement(7769..8260)
                     /gene="tsaE"
                     /locus_tag="PXA71_001208"
     CDS             complement(7769..8260)
                     /gene="tsaE"
                     /locus_tag="PXA71_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDL5105329.1"
                     /translation="MTDSLSFYCEDETKLLEFGQSFALELKKYLLQDQAHSLVVYLNG
                     ELGAGKTTLTRSIVRAFGHQGNVKSPTYTLVEEYQLPPFSLYHFDLYRLADPEELEFM
                     GIRDYFKPQTLCLLEWAVKGKGMIPEADFVIQIDYKNDGRQISLLPQNQTAVDILVNF
                     HQK"
     gene            complement(8260..8814)
                     /gene="orn"
                     /locus_tag="PXA71_001209"
     CDS             complement(8260..8814)
                     /gene="orn"
                     /locus_tag="PXA71_001209"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HDL5105330.1"
                     /translation="MAQNEQNLIWIDLEMTGLDPEKERIIEIATIVTDKDLNILAEGP
                     VLAVHQTDDLLEKMSDWCVKTHTANGLIERVKASKLTERAAELQTLDFLKRWVPKGAS
                     PICGNSIAQDKRFLYKYMPDLADYFHYRHLDVSTLKELARRWKPEILDKFSKGNTHLA
                     LDDIRESINELKFYREHFIQLDQK"
     gene            complement(8824..9303)
                     /gene="coaD"
                     /locus_tag="PXA71_001210"
     CDS             complement(8824..9303)
                     /gene="coaD"
                     /locus_tag="PXA71_001210"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDL5105331.1"
                     /translation="MSYNVIYAGTFDPITNGHLDIICKASHLFGKVIVAVAQNPSKQP
                     LFSLEERVELVKQSCTQWQNIEVIGFSGLLADFAKQQNAKALIRGIRGADDIDYEIQL
                     AQLNYKLSGDLETIFFPPSIEWRYLSSTMVREIYRHNGDISQFVPQAVKNALKIAKV"
     gene            complement(9305..10585)
                     /gene="waaA"
                     /locus_tag="PXA71_001211"
     CDS             complement(9305..10585)
                     /gene="waaA"
                     /locus_tag="PXA71_001211"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HDL5105332.1"
                     /translation="MLRLLYICLSYLLQPVVLLLMWYKGRKQPAYRKRLWERYGIYDE
                     SEKPKAKGVVIHAASVGEVIAATLLIKAVSKQYPELPLIVTTVTPTGSGRVQAAFGNS
                     VSHFYLPYDLPDAIERFLNFIDPKLMIVIETELWPNLIRKVNIRKIPFVIANARLSPR
                     SAKRYGWVKGSIKDMLNQISLIMAQDEVSRDRYLALGYAPAKMVNTGNLKFDLEITPQ
                     LHQSVIKTKASLNLTERPIWIAGSTHEGEEKLILDAHKLLLEHYPNLVLILVPRHPER
                     FGLVELLIQKSDLNYVKRTENKTLSQNTQVMLGDTMGEMMLLYGLSDIAFVGGSLVKH
                     GGHNPLEPIAFNIPVVSGLYTYNFPEIFEKLREVKGVIEIESSVEALTESIQLLLKQP
                     QIGQEIAKSGLSVLQENQGALKRHLDLLASYLEK"
     gene            complement(10765..12144)
                     /gene="yegQ"
                     /locus_tag="PXA71_001212"
     CDS             complement(10765..12144)
                     /gene="yegQ"
                     /locus_tag="PXA71_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HDL5105333.1"
                     /translation="MTLKYAKPELLSPAGSLKNMRYAFAYGADAIYAGQPRYSLRVRN
                     NEFNHANLKVAIDEAHALGKKFYVVVNIAPHNSKLKTFIKDLKVVVDMKPDALIMSDP
                     GLIMLVRENFPEMDIHLSVQANAVNWATVKFWRQMGLTRVILSRELSLEEIEEIREQV
                     PDMELEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKMEEGKIDEVGQI
                     VPKYEPEIEVKNVAPTLGNGEATDKVFLYTESQRPDEQMTAFEDEHGTYFMNSKDLRA
                     VQHVERLTQMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDESLMDTLESL
                     AHRGYTEGFLRRHTHDEYQNYEYGYSISERQQFVGEFTGKRNAEGLAEVAVKNKFLVG
                     DSVEMMTPKGNIVFKIERMLNRKNENVDAALGDGHFVFLDVPADIELDFALLMRNLVN
                     TNTRNPHQA"
     gene            12272..12643
                     /locus_tag="PXA71_001213"
     CDS             12272..12643
                     /locus_tag="PXA71_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105334.1"
                     /translation="MKLKYLLATTLLAFSTFTAAQSIKTEMMQMNMQANKLMRAESAE
                     EFSEIANDFIIITEKTKGIFPNSVEGDKAAQEDYQAGMQKLIDMVNQASEKAQAGELQ
                     EAKMLISELEMIKREYHKKYK"
     gene            complement(12682..16158)
                     /gene="dnaE"
                     /locus_tag="PXA71_001214"
     CDS             complement(12682..16158)
                     /gene="dnaE"
                     /locus_tag="PXA71_001214"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDL5105335.1"
                     /translation="MSDCRFVHLKVHSDFSMINGLAKVKSLVKTAAANNMVAMGLTDF
                     INFCGLVKFYGEALGAGIKPIIGADVYVRTESGNEDYFELTLLAKNNKGYHNITQILS
                     KAYQQGYVEFPMVEREWLAELNEGIIILSGGRMGDVGKALLKENRQEAEEKLAFYQQY
                     YPNHFYLSVCRTGRADEERYIKQAVEFSQKNAIPLVAVNDVVFLKEDDFDAHEIRVAI
                     HDSYTLDDPKRPKKYSPKQYFRTEEEMCKLFADLPSALANTVEIAKRCSVTVRLGEYF
                     LPNFPTGELSTEDFLVKKSKEGLEERLEFLFPDPEERANKRSVYDERLQVELDVINQM
                     GFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLN
                     PERVSMPDFDVDFCMDGRDRVIEHVAETYGRQAVSQIITFGTMAAKAVIRDVGRVLGH
                     PYSFVDRISKLIPPDPGMTLEKAFAAEPKLPELYEADEEVKDLIDMARKLEGVTRNAG
                     KHAGGVVIAPTAITDFSPLYCDSEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKW
                     ALEMINERLAREGKEPIRIETIPLDDKKSFALLLAAKTTAVFQLESRGMKDLISRLKP
                     DCFEDIIALVALFRPGPLESGMVQNFIDRKHGKEEVSYPDPQYQHECLKPILEPTYGV
                     IVYQEQVMQIAQELAGYTLGGADLLRRAMGKKKPEEMAAQREVFEKGAEAKGIDGKLA
                     GQIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTSEMDNTDKIVG
                     FYDECMNMGLTVVPPDVNSGKHRFSVNEKGEIVYGLGAIKGVGEGPIEAILAARQKEG
                     KFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKNLEDALKASDQHAKM
                     EELGQSDMFGVLTETPEEVQNAYANTPKWSEQVILDGERATLGLYLSGHPIGRFLKEL
                     SHYAPNRLNELQPTFRGQMTTVSGIVMASRVAVTKRGSRIGIATIEDRSGKLDITLFS
                     EALENFGHLMQQDQIIVATGSVQFDDFSGGLKMSAREVLSLDEARGRFAKSLALAISK
                     EQLSADFIKKMTAIITPHKEGTLPLHFYYQSPEGRVLLKGGVEWRISPNEAMFSELKA
                     LLGENSVELEFE"
     gene            complement(16383..17480)
                     /gene="lptG"
                     /locus_tag="PXA71_001215"
     CDS             complement(16383..17480)
                     /gene="lptG"
                     /locus_tag="PXA71_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HDL5105336.1"
                     /translation="MQFFSMNILERYIGKTILSAIFLTLFMLIGLGAIIKFVEEFRDV
                     GRGSYDGLKAAYYTFLTIPRDIETFFPIAALLGSLLGLGNLASLSELVVMQASGFSRF
                     RIGLAVMKTALPLVIFTMIIGEWGVPQTEQFARNMRSIAQSGGSMLATKDGFWAKDGN
                     SFIYINHIKNEKSLDNVLIYQFGEGQNKRELQSVLKARTANYSDEKGWVLSKVEKSTV
                     GENQIQQAKQPDQVWQTSLTPSKLGIVSLKPESLSISGLADYVGFLKDTGQDPKRFEI
                     TFWRKVFQPISMAVMMLLAISFIFGPLRSSTMGAKIVIGIVAGFMFYVANIVFGNLSL
                     IATWLPIPVGALIPSLLCLIIVWWLLSKKRD"
     gene            complement(17480..18589)
                     /gene="lptF"
                     /locus_tag="PXA71_001216"
     CDS             complement(17480..18589)
                     /gene="lptF"
                     /locus_tag="PXA71_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HDL5105337.1"
                     /translation="MILSRYLTKEIFKSQLAILFILLLIFFCQQLVRVLSSAVSGKVP
                     ADLVVSLLGLGMPTMAQLMLPLSLFIALLLTLGRFYAESEITVMRACGIGQGLLVKVA
                     MFLSIFTTALAVYNVFWLTPWAINKQSEMLAEAKANPRFAALSAGQFMSAGGYVLFID
                     KIENNSLNDIYVFQPEQQKKNKPSVVVAESGTLQGLPNGDQVLTLAESKRFEGTPQSA
                     DFRISHFENYSAYLGYQDVESDEKLVQRADFKKLMETKTPEAKAELHWRLALILAVPL
                     MALLAVPMSSVNPRQGRFAKLLPALLLYLIYFLLQSSLKSSGASGKLNAEVLMPLVSV
                     AFLVLGVILNAWDSKFMSKLRYQFGAKKLTNKAVA"
     gene            complement(18763..19560)
                     /locus_tag="PXA71_001217"
     CDS             complement(18763..19560)
                     /locus_tag="PXA71_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105338.1"
                     /translation="MRFWGKTFVVGLIGLGTQNTIFANDDAQISRYEQAKLRLSYDGN
                     VGNLLQQLSQRLKVGFIAYDVDITRKISLQNETETAIKTINEQIESQLTNIDVRFEKI
                     GERLFLVVSAKDVAPLLQNEPKEVQFVGDVIFDGEPNLTEQAQSTAEATKVQNILNIA
                     TNQEKIMAAKGKKAPQYKTVTKDNIGLKNIRVTALGTFLVFDTSVDAAKLRVKGNFED
                     IAQGENIIAILHQNTEAPPKIEIEDSQGKKLILEAHKATSSKKSKKQ"
BASE COUNT         5623 a         4455 c         3806 g         5740 t
ORIGIN      
        1 gatcaaagca aacataaaac attattaatt tttaacgaca aaataactct tttgggtaat
       61 aatttcatca gttaaaaaaa ttatcaaatt taaattttat gaggaaccaa actatggcta
      121 aaaatacgca accatttgat gcccaagcag aagtgaatga gcttgttgaa aaaggcttaa
      181 aagcccttga tgagtttaga aaactcaacc aagaacaagt ggattttatt gtcgctaaag
      241 cctctgttgc tgcccttgat aaacacggta ttttagcaat gcacgcttac gaagaaaccg
      301 gacggggtgt gtttgaagac aaagccacta aaaacctgtt cgcctgtgag tatgttgtca
      361 ataatatgcg acatttgaaa accgcagggg tcattagtga agatgatgtc accggtatta
      421 ccgaaattgc cgaccctgtc ggtgttgtct gcggtatcac cccaaccacc aacccaacct
      481 caaccaccat tttcaaagcg ttaatcgccc ttaaaacccg taaccctatc gtttttgctt
      541 tccacccgtc tgctcaacaa tcttctgccc acgctgctca aattgtgcgt gatgctgccg
      601 tggctgccgg tgcaccggaa aactgtattc aatggattac ccagccttca atggaaggta
      661 catctgcttt aatgaaacac ccgggcattg caactatttt agccaccggc ggtaatgcaa
      721 tggttgaagc cgcttactct tgcggcaaac cggcattagg agttggtgca ggcaacgtac
      781 cggcttatgt agaaaaaacc gctaaattaa aacaagcggt gtatgacatt gtaatgtcaa
      841 aatctttcga caacggtatg atttgtgcct ctgaacaagc ggcgattgta gataaagaaa
      901 tttacgctga gtttattaaa gagatgcaat cttacggcgt ctatttagtg aacaaaaaag
      961 agaaagcctt attggaaaaa tacattttcg gtattgataa agccaaagat gaaaactgct
     1021 caggtgcaaa actcaattca gcggtggttg gcaaaccggc tgcgtggatt gcagaacaag
     1081 ccggctttaa agtaccggaa aaaaccaata ttctgttagc cgaatgtgcc tttgtgggcg
     1141 aagctgagcc acttacccgt gaaaaacttt cgcctgtact ggctctgtta aaatccgact
     1201 ccaccgaaca cggtttggaa ttgtctgaag cgatggtgaa tttccacggt ttagggcata
     1261 gtgccgccat tcataccgaa aacaaagcct tagccaaaac ctttggcgaa cgggtaaaag
     1321 ccattcgggt gatttggaac tcaccatcaa cctttggcgg tatcggtgat gtatataact
     1381 ccttcctgcc atcgcttacg ctgggctgtg gttcctacgg taaaaactct gtaggtaaca
     1441 acgttagtgc ggtgaattta atcaatatca aacgtgtggg cagacggaga aataatatgc
     1501 aatggtttaa agtgccatca aaaatctact ttgagcgtga ctcaattcaa tatttgaaat
     1561 caatgcacga tgtgcataaa gtaatgatcg taaccgaccg ctcaatggtt gatctcggct
     1621 ttgtggatag aattaccgaa caacttcgcc aacgtcgcaa ccaagtgatg attcagttct
     1681 ttaccgatgt tgaaccaaac ccaagcctgc aaaccgtaca acgtggtaca gaattaatgc
     1741 gtagcttcca gcctgatact atcatcgcac ttggtggtgg ttcaccaatg gatgcagcca
     1801 aaattatgtg gttattctac gaacaaccgg aagtcgattt ccgtgattta gtgcaaaaat
     1861 ttatggatat ccgcaaacgt gcattcaaat tcccacaatt aggcagaaaa gcgaaatttg
     1921 tcggcattcc aaccacctcc ggaacaggct ctgaagtcac accgtttgca gtaattaccg
     1981 atggcgatat taaatatccg ctcgctgact actcgcttac cccaaccatt gcgattgtcg
     2041 atcctgcgtt agtaatgtct gtgccgtctc acgttgctgc cgacaccggt ttagacgtat
     2101 taactcacgc taccgaggct tacacatcga ttttagccaa cgactatacc gacggcttag
     2161 ccttgcaagc cattaagtta gtgtttgaaa acttggaaaa atcggtcaaa gagtttgatg
     2221 aaaccgcccg tgaaaaaatg cacaatgctt ccacaatggc agggatggca tttgccaatg
     2281 ccttcttagg tatttgccac tcaatggcac acaaaatcgg gggtaaattc cacaccatcc
     2341 acggtcgaac caatgcgatt ttactgccac acgttattcg ctataacggc acacgcccaa
     2401 ccaaagtggc aacttggcca aaatacacca attatgtcgc agatgtgcgt ttccaagata
     2461 ttgccagaat gcttggctta ccggcagaaa ccccggaaca agcggtggaa gcttacgccc
     2521 aagcggtaca cgatttagcc gttcgttgcg gcgtgaaaat gtcgcttcgt gagcaaggcg
     2581 ttgatgagca agccttcttg aatgcccgcc gtgaacttgc cctacacgca tttgaagacc
     2641 aatgcacacc agcaaaccca cgtttggcaa tgattgaaga tatggaagcg attatgacta
     2701 aagcctacta tggcaaggaa taaagcacaa tttaatcgtt aaacttacta aatggccgct
     2761 tgcaagcggt catttttctt gaaattttta cttttccctt cacaaaatac tttcgctctt
     2821 ttacaaagca tagtattttt atcgctcctt ttatcttaca ggaaatacta tgcaaattac
     2881 gattttagac ggcggaatta gccgtgaatt aatgcgtcgc aatgctccat ttcatcagcc
     2941 tgaatggtct gctgccgctt tgtatgaagg cccacatttt gtgcaagcgg tacacgaaga
     3001 ttttatcgct cacggggcag aagtgattac taccgacagc tatgcggttg tgccgtttca
     3061 cattggcgaa aaacgctttg cggcagacgg caaaatgctt gccgatttag ccggtcgcct
     3121 tgccaaacaa gcggtcaaaa attcaggaaa tattgcaact caaattgcag gctcacttcc
     3181 accaatgttt ggctcttacc gtgccgattt aattcaaatg gaacgctttg ctgaagtcgc
     3241 tcagccttta attgacgggc tttcgcctta tgtggatatt tggctttgcg aaacccaaag
     3301 tgcgattatt gagccgattt ccatcaaagc attattgccg aaagacaacc gcccgctttg
     3361 ggtctctttt accctcaccg atgatgaacc aaccaccgag ccacaacttc gctcgggcga
     3421 aagcgttaaa caagcagtcg aagaaatggt gaagttaggc gtgcaagcga ttttatttaa
     3481 ctgctgtcag cctgaagtga tcggcgaggc attaagtgta acccaaaaaa ctttagccga
     3541 attaaaagct acccatattc gcacaggagc ttatgccaac gcctttgctc cacaaccaaa
     3601 agatgccacc gccaatgacg gtttagatga agttcgccaa gatttaaccc tggaggctta
     3661 tttaggctgg gcaaaaaaat ggacggaaca aggggcaact attatcggtg gctgctgcgg
     3721 cattggggtt gagtatattg aaacgctggc aaaaaattta aaataaggaa atcgaatgtc
     3781 aaataaaaaa ataggattaa tttcactcac cgccttagtg ctaagctcaa tgattggctc
     3841 ggggattttc agcttaccgc aaaatatggc agccgttgcc ggagcagaag ccattaccat
     3901 tggctggctg attaccggtg tcggcattat ctttttaggt ttatcgtttt tctttatttc
     3961 ccgcttgcgt ccggatttag acggtggcat ttacacctac gcacgggagg gttttggcga
     4021 gctgatgggc tttatgtcag cgtggggcta ttggctctgt gccaccattg ggattgtagg
     4081 atacctcacc gttgcttttg aaggtttggg tgtatttacc gacaacccga acaccgtgat
     4141 tttcgggcaa ggtaacaccc tcgcctcttt tattggatct tcaatcattg tgtggctggt
     4201 tcacgccctc atcgcaggcg gtatcaaaga agctgccttt gtaaacttaa ttgccacttt
     4261 tgtgaaagtc gctccgctca ttctgtttat cgggttaggc atttggtatt tcgatgtgga
     4321 tctgtttaat agcgatgtta aagccaccgc acttaataat agtgtaagcg accaagtgaa
     4381 aagcacaatg ttaatcacct tatgggtatt taccggtgtg gaaggggctt ctgtgctgtc
     4441 ggctcacgcg aaaaagcgtt ctgacgtggg actggcaacc gtattaggta ttattattgc
     4501 acttgctctt tatgtggcaa ttaccattct ttcactcgga attctgccac gggaaactat
     4561 tgccaatatg gcaaatccgt caatggggcc gttgctcgat gcaatgatgg gcccaaccgg
     4621 caaagtgatt attactgctt gtttaattgt atcggtgctt gcctcttaca ttagctggac
     4681 gatgtattcg gcagaagtgc cttatcgtgg ctcaaaaaac ggggctttcc cgaaaatttt
     4741 agacaaagtg aataaaaacg gcacgccgat taactcactc tggtttaccg gctttatcgt
     4801 gcaattttgc ttggtgttgg tgtttgtttt tgagcaaagc tataacacct tattgctgat
     4861 ttccacctcg atgattttaa ttccctattt cttaatcggg gcttatttat tcaaattagc
     4921 gattcaaacc aacgccactt ggtacattaa actcaccggc tttatggcag ccctttacgg
     4981 attatggatt gtctatgccg caggactaga atatttgctg ctttcggtgg tgctttatgt
     5041 acccggaatt ttactcttcc tctactccaa ctataaattc aacggcagat taaccctttc
     5101 aaccgctgaa aaggtcatct taatcgtgct actggtaatt tttggctatg ccgtgattga
     5161 gctgccagca ctattagcag cataattccc atcaaaaatg accgcttgca agcggttatt
     5221 tttctaggat cttctgcaaa gattcattag aatagaaaca acgtcaataa taaataaaaa
     5281 gaggagaaac aatgcaaact tatcaacata aagccctttg tcgggtaaga accattaccc
     5341 tttttctgag tttaaccaaa gataaattgc agtgggaaac ggcattaaat gcggcaaaag
     5401 cagaatttga tctattagtt cccgctattc aaacacaagg ctatcacata caatcgattc
     5461 gaatcgttac caacagtttc ggggaatatc ttgatctcac taatattgaa acagcgaaac
     5521 aggatttagc ctatcttaaa cagctattaa cccaacttaa cgatagcggt ttacgcattc
     5581 gctttgccat tggtgaggca aaaacacccc acgaattagc attactacct gagctgattt
     5641 taaattatgg tgatttatct aacgcttgtg tcaatattga acccgatgaa tttgggattt
     5701 tagacaatga aaccatttta caatctgctc aaattatcaa acaaatcgct gaaattaccc
     5761 caagaggtga aggcaatttt aattttacgg tgaattttaa ctgtaaacct tttattcctt
     5821 attttccggc aagctaccat tcaagcaagc tccctaacag ttttgtgata ggcctagaaa
     5881 caccagatct attagtagcg gtgttaaaag agctgaaagc cagcccacat aacgactttt
     5941 atcgccaatg ctatgaaacg atgtctcaag ccttgcaata tcacgttgat gaagttctcg
     6001 aagcagtaaa atcggtacaa cacaaattac aatttgcctt tgctggcatt gatagttctg
     6061 ctgctccgtc aaaaaactgt gcctcaatga cagaagttta tgaattaatg ggcgtaccat
     6121 tttttggggc agccggaaca gtagaagcct cttcacttct gacaaaagtc tttaaatcta
     6181 tcaaacatgt accgcttgtc ggtttttcag gtttaatgtt ggcagtaacc gaagatttag
     6241 gcttagccgc aggcacacac aaagcccaat tcgacattcg tgctttacta acttatagtg
     6301 ctgtttgtgg cattgggtta gataccgtac cgatttccaa tgaagccact gttgaacaaa
     6361 ttgccgcatt aatgcgagac accggcacaa tggcatttag actaaataaa ccgcttacag
     6421 tacgtttatt tccaattccg aataagagtg ctggggaagt gacagaattt gaaagtgatg
     6481 atttatgtaa ctgccgaatt ttagctgtac cttaaaataa aggctgatgg atatttccat
     6541 cagcctttca atttacttca ccttcaattt tttacctacc gtgatctgat aatttttcaa
     6601 attattcagc tcactgattt tttgcggcgt agtaccgtaa gctctagcaa tcgagtaaac
     6661 cgtttcatct tgttggacaa tatggtagcc actgttagac accttaattt ctctttgaga
     6721 gtctgatttt ttagactgat ttttttgatc tttctcaaga gctgtttttt cttttagttg
     6781 ctgctctttt ttcttattgg ttttagccga atcttctttt ttatcctctt ttttgctctt
     6841 ttctttcaat tttgtcttat ctgattgcgt attcttctct tgtttctcag aagcaggctt
     6901 tttagttaaa tcagctttag cagttttttc ctctttctta ttttgcttat cttctttgtc
     6961 cgatttttta ctgaccgaag aactagcaac tgcatttttt gcccgataag cgactaatcc
     7021 attataaatg gcccgagcaa cttgtttacg ataatttgca ctggctagct ttgcttcctc
     7081 ggttgaatta gataaaaatc ccgtttccac caatacagat ggaatatcag gtgaacgcag
     7141 aacacttaag cttgcgtgct gaggagacga ttttgctaat gcagccacat ttgacatttt
     7201 agctaaaatg ctcttgccta attcatagcc ggcacgttga gagtgagaga actgtaaatc
     7261 aagcactgtt tgatttaaat aacgttcatt gttgcttgaa agcaccgaac cagccccgcc
     7321 aagtaattcc gactgcttct cgtggtcttc caaccattta cccatttcat cgctagcacg
     7381 gctattagaa agtacccaaa ccgaagcccc tttcaaggaa tcgccacgag gcgaagagtc
     7441 tgcgtgaata gaaaccagca gatcggcacg atgcttacgg gcaatctcgg tacgttgcgg
     7501 taattggata aaataatctc ccgagcgtgt catcactgct ttaaaattag gatcggcatc
     7561 taacaaggct tttagctctt tagaaattgc gagggtaacg cttttttcca aaatccccag
     7621 atttttacca atagcccccg gatcttttcc cccgtgtccg gcatcaatcg ccacaatggt
     7681 tttggcaaat gtggaaaaac tgaataaact caatgtgcta aaaacaataa atctgataac
     7741 ttgcttcatt accttcccta caagcggtct atttttgatg aaaatttact aatatatcta
     7801 ctgcagtttg attttgcggc aacaggctaa tctgccgtcc gtcattctta taatcaattt
     7861 ggatcacaaa atcagcctct ggaatcattc ctttaccttt aactgcccat tcaagcaaac
     7921 aaagcgtttg tggtttgaaa taatcacgaa ttcccataaa ctccagctct tcaggatcgg
     7981 ctaagcgata caaatcaaaa tggtaaaggc tgaaaggcgg aagttggtat tcttccacca
     8041 gagtataagt tgggcttttt acattgcctt gatgcccgaa agcccgtacg atcgagcggg
     8101 ttaaggtggt tttacctgcc ccaagttcgc cgtttaggta aacaaccagc gaatgagctt
     8161 ggtcttgcaa taaatatttc ttaagttcta acgcgaatga ttgaccaaat tccagcaatt
     8221 tagtttcatc ttcgcagtaa aaagagagag aatctgtcat tatttttggt ctagctgaat
     8281 aaaatgttcc cgataaaatt tcaattcgtt aatggattca cgaatatcgt ccaacgctaa
     8341 atgcgtattg cctttactga atttatctaa aatctccggt ttccaacggc gtgccagctc
     8401 ttttaaagta ctcacatcta agtggcgata atggaaataa tcggctaaat caggcatata
     8461 tttatacaaa aaacgtttat cttgagcaat gctgttgccg caaatcggag aagcgccttt
     8521 tggcacccag cgttttaaga agtctaaagt ttgcaactct gctgcccgtt cagtcaattt
     8581 gctcgctttc actcgttcaa tcagcccgtt agcggtatgg gttttgacgc accaatcact
     8641 cattttctct aataaatcat cggtttggtg taccgcaagt accggtcctt ccgctaaaat
     8701 atttaaatcc ttatcggtca caatggtggc gatttcaata atgcgttctt tttccggatc
     8761 taaccctgtc atttcaagat cgatccaaat taaattttgt tcgttttgag ccattttatt
     8821 tccttacact tttgcaattt ttagggcatt tttgaccgct tgcggcacaa attggctgat
     8881 gtcaccattg tggcgataga tttcccttac catcgttgaa gaaaggtaac gccattctat
     8941 tgaaggggga aaaaaaatag tttctaaatc gcccgataat ttgtaattta actgagcgag
     9001 ttggatttca tagtcaatat catctgcccc acgaatacca cggattaacg ctttggcatt
     9061 ctgctgtttg gcaaagtctg ctaacaatcc actaaagcca atcacctcaa tattttgcca
     9121 ctgggtacag ctttgtttaa caagctccac tcgttcttca agactaaaaa gcggctgctt
     9181 gcttgggttt tgagcaacgg caacaatcac ttttccaaat aagtgagagg ctttgcaaat
     9241 tatgtccaaa tgcccattgg taatgggatc aaaggtgcct gcataaatta cgttataact
     9301 cattttattt ctctaaatag gaggctaata aatccaaatg gcgttttaat gccccttgat
     9361 tttcctgtaa cacgcttaag ccggattttg caatttcttg tccgatttgg ggctgcttaa
     9421 gcaataattg aatgctctcg gtcaaagcct cgactgaact ttcaatttca atcacgcctt
     9481 tcacctcacg caatttctca aagatttcag ggaaattata ggtgtaaagc ccagaaacca
     9541 ccggaatatt aaaagcgatt ggttcaagtg gattatgccc accgtgtttg accaaactgc
     9601 ctcctacaaa agcaatgtca gacaacccat acagtaacat catttccccc attgtatcac
     9661 ctaacattac ttgagtattt tggcttaacg ttttattctc agtacgtttt acataattta
     9721 aatctgattt ttgaatcagt agctcaacta aaccaaaacg ctccggatgg cgaggcacta
     9781 aaatcaacac taaattcggg taatgctcta ataagagttt atgagcatct aaaatcagct
     9841 tctcttcccc ttcgtgagta ctgccggcaa tccaaatcgg tctctctgtt aaattcagac
     9901 tagctttagt tttaatcacc gattgatgaa gctgtggcgt aatttctaaa tcaaatttca
     9961 ggttaccggt attaaccatt tttgccggtg cataaccgag tgctaaatag cgatctcggc
    10021 ttacctcatc ttgagccata atcagactaa tttggttgag catatcctta atgctacctt
    10081 ttacccagcc ataacgcttc gcagaacgtg gcgataagcg ggcattggca atcacaaatg
    10141 gaattttacg aatatttact ttacgaatta aattcggcca aagttcggtt tcaattacaa
    10201 tcatcaattt cggatcgata aaattcaaaa accgctcgat agcatcaggt aagtcataag
    10261 gcaaataaaa atgtgaaaca ctattaccaa aagcagcttg cacacgccca gagcctgttg
    10321 gcgttaccgt tgtgactatc aacggaagtt caggatattg cttgctgact gccttaatca
    10381 aaagcgttgc agcaatcacc tcaccaaccg atgccgcatg gattaccacc ccttttgctt
    10441 tcggtttttc cgattcgtca taaatcccat aacgctccca taaacgtttc cgataagccg
    10501 gttgtttacg ccctttgtac cacattaata gcagaaccac aggctgtaat agataactta
    10561 aacaaatata gagtaaacgt agcatttatt ttccttatac cataaccctc acctcttgtg
    10621 ggagagagtc aaatacgcca ataaatcgtt cctctcttgt tcgagagggg ggaacaagcg
    10681 gttattttta ccaaaaattt tgcaatctat atcctcaaag acaaaaccac ggaataacct
    10741 taatccgtgg tttatctcgc atcattacgc ttgatgtgga ttgcgggtat tcgtattcac
    10801 taagttacgc attaaaagtg caaaatccaa ctcaatatct gccggcacat ctaaaaagac
    10861 aaaatgcccg tcaccgagtg ctgcgtccac attttcattt ttgcggttaa gcatacgctc
    10921 gattttaaat acaatgttgc ctttaggggt catcatttcc actgaatcgc ccactaagaa
    10981 tttgtttttc actgccactt ccgccaagcc ttctgcattg cgtttgccgg taaattcgcc
    11041 cacaaattgt tggcgttctg aaatcgaata gccatattca tagttttggt attcatcgtg
    11101 agtatgacga cgtaagaagc cctctgtata accacggtgt gcaaggcttt caagagtatc
    11161 cattaaactt tcgtcaaacg gtttaccggc agcggcatca tcaatcgcct tacgatacac
    11221 ctgagccgtt ctcgcacagt aatagaacga tttcgtacgc ccctcaattt tcagtgaatg
    11281 cacccccatt tgagttaaac gctcaacgtg ttgtactgca cgcagatctt tagagttcat
    11341 aaaataggtg ccgtgttcat cttcaaaggc ggtcatttgc tcatcagggc gttgtgattc
    11401 tgtataaagg aacactttat ctgttgcttc gccattacct agagtaggag ccacattttt
    11461 gacttcaatt tccggctcat acttaggcac aatttgccct acctcatcaa tcttaccttc
    11521 ttccatttta tattcccaac ggcaagcatt ggtgcaagtg ccttggtttg ggtcacgctt
    11581 attgatatag cctgaaagca agcagcgacc tgaatatgcc atacacaaag caccgtgaac
    11641 gaagatctca agctccatat ccggcacttg ttcacgaatt tcttcgatct cttcgagtga
    11701 taattcacgg gataaaatca cacgggttag ccccatttga cgccagaatt tcaccgttgc
    11761 ccagtttacc gcattggctt gcaccgaaag atgaatatcc atttcaggga aattttcacg
    11821 caccaacata attaagcccg gatcagacat aatcaaagcg tccggcttca tatccactac
    11881 cacttttaga tctttgatga aggtttttaa ttttgagttg tgtggcgcaa tgtttaccac
    11941 cacatagaat ttttttccta aggcgtgggc ttcatcaatc gcaactttta aattggcgtg
    12001 gttaaattca ttattacgca cacgcaagct ataacggggc tgtcctgcat aaatcgcatc
    12061 ggcaccataa gcaaaagcgt aacgcatatt ttttaaagaa cctgcaggcg aaagtagctc
    12121 aggtttggca tattttaaag tcatattatt ctcttttctg ataacaagtc aggacttctc
    12181 gacgtgagaa gcgtaagcgg tatattttct aagaaatatt gcgtgatggc aagctaatcc
    12241 attacaatcc gatttttatg tggggaacaa tatgaaactt aaataccttt tagcaacaac
    12301 attactggct ttttcaacat ttaccgccgc tcaaagcatc aagacggaga tgatgcaaat
    12361 gaatatgcaa gcgaataaat tgatgcgtgc cgaatcggca gaagagttta gcgaaattgc
    12421 gaatgatttc attataatta ccgagaaaac caaagggatt tttcccaata gcgtagaagg
    12481 cgataaagca gctcaggaag attaccaagc cggtatgcaa aaattaattg atatggttaa
    12541 tcaagccagt gagaaagctc aagcaggtga attgcaagaa gcaaaaatgc tgatttccga
    12601 gcttgaaatg atcaagcgtg aatatcacaa aaaatacaaa taattcaaca cattaaaagg
    12661 gtgagctaaa gctcaccctt tctattcaaa ttccagttca accgaattct caccaagaag
    12721 tgcctttaat tcgctaaaca ttgcctcatt cgggctgatt cgccactcta ctccgccttt
    12781 gagcaatacc ctaccttccg ggctttggta ataaaaatgc agcggtaaag tgccttcttt
    12841 atgtggggtg atgatagcgg tcattttttt aataaaatct gcagaaagtt gctctttgct
    12901 aatcgctaac gctaaacttt tggcaaatcg accccttgct tcatcaaggg ataacacttc
    12961 tcgagccgac attttcagtc caccgctgaa atcatcaaac tgtaccgaac ctgttgccac
    13021 aataatttgg tcttgttgca tcaaatgccc gaaattttct aaggcttccg agaaaagggt
    13081 aatgtccaat ttccccgagc gatcttcaat agtcgcaatc ccaatacggc ttcctcgctt
    13141 ggtaactgcc actcgagatg ccataacaat tcctgaaacc gtggtcattt gccctcggaa
    13201 agtcggttgc aattcattca gccgattagg ggcatagtgg gataattctt tgaggaatct
    13261 accaatcggg tgtccgctta aatacagccc gagcgtggca cgctctccat ctaaaatcac
    13321 ttgctccgac cattttggcg tattggcgta agcattttgc acttcttccg gtgtctcggt
    13381 aagcacgcca aacatatcgc tctgcccgag ttcctccatt ttagcgtgct gatctgaggc
    13441 tttaagtgca tcttccaaat tcttcatcaa ggcagctcgg tgagggccta atttgtcaaa
    13501 agcaccggac ataatcaggc tttcaaaggt gcggcggttg atttttttca gatcgacccg
    13561 agcggttaaa tcaaatagat ctttaaattt cccctctttt tggcgagctg ccagaattgc
    13621 ctcaatcggt ccttccccaa cgcctttaat tgctcctagc ccgtaaacaa tttcgccttt
    13681 ttcatttacg ctaaaacgat gtttaccgct gtttacatca ggcggcacaa cggttaagcc
    13741 catattcata cactcatcgt agaacccgac aattttatcg gtattatcca tctctgaggt
    13801 cattaccgca gccataaatt ctgccggata atgggctttt agccaaagtg tttggtaaga
    13861 aaccaacgca taagctgctg agtgagattt attaaagccg tagccggcaa acttttctac
    13921 caagtcaaaa atttgaccgg caagtttacc gtcaatccct ttggcttccg cccctttttc
    13981 aaacacttca cgctgtgcag ccatttcctc cggtttcttc ttacccattg cacggcggag
    14041 taagtccgct ccaccgagtg tataaccggc aagctcttgt gcaatttgca taacctgttc
    14101 ttggtaaaca atgaccccat aagtcggctc gagaataggt tttaagcatt cgtgttggta
    14161 ttgcggatca ggataagaaa cctcttcttt gccgtgttta cggtcaataa agttctgcac
    14221 catacctgat tccagcggcc ctgggcggaa tagtgccacc aatgcgataa tatcttcaaa
    14281 acagtccggc ttcaggcgag aaattaagtc tttcattccc cgtgattcaa gctggaatac
    14341 tgctgtagtt ttagctgcca gcaacagagc aaaggatttt ttatcatcaa gcggaatggt
    14401 ttcaatccga atcggctctt tgccttcacg agccaaacgt tcgttaatca tctccaacgc
    14461 ccatttgatg atggtgagcg tacgcaagcc taagaagtca aacttcacca atcctgcata
    14521 ttccacgtca tttttatcaa aatgggtaac cgggtgtaag ccctcgctat cgcaataaag
    14581 cggcgaaaaa tcggtaatcg cagttggggc gatcaccaca ccaccagcgt gtttacctgc
    14641 attacgagtt acaccttcga gcttacgagc catatcaata aggtctttca cctcttcatc
    14701 ggcttcatat agctcaggca attttggctc agcggcaaag gctttttcaa gcgtcattcc
    14761 tggatcgggc ggaatgagtt tggagatgcg atccacaaag ctataggggt gtccaagcac
    14821 tcgccctaca tctcgaatga ccgctttcgc cgccatagta ccgaatgtga taatttgcga
    14881 taccgcttgt cgcccgtagg tttccgcaac gtgttcaatc acacggtctc gcccgtccat
    14941 acagaaatca acgtcaaaat cgggcattga aacacgctca gggttgagaa aacgctcaaa
    15001 aagcaaatca aattccaatg ggtcaagatc ggtaatcttc aacgcataag ccaccaatga
    15061 gcctgcccct gagccacgac ccggtcctac cggaatatca ttatctttgg accattggat
    15121 aaactccatc acgatcaaaa agtaacccgg gaaccccatt tggttgatca catctaattc
    15181 aacttgcaat ctttcgtcat aaaccgaccg cttgttcgcc ctttcctcag gatcagggaa
    15241 tagaaactct aaacgctctt ctaagccttc tttcgatttt tttaccaaga aatcttcggt
    15301 ggaaagctca ccggtcggga aatttggcag gaaatactcg cccaaacgca cggtaaccga
    15361 acagcgtttc gcaatttcaa ccgtgtttgc caatgcactc ggtaaatcgg caaacagctt
    15421 gcacatttcc tcttcagtac ggaaatattg tttcggtgag tattttttcg ggcgtttcgg
    15481 gtcgtctagg gtgtagctgt cgtgaatggc aacccgaatt tcgtgtgcgt caaagtcatc
    15541 ttctttcaag aagacaacat catttaccgc cactaacgga attgcatttt tttgtgaaaa
    15601 ttcgaccgct tgtttgatat agcgttcttc gtctgcccgt ccggtacggc aaacggaaag
    15661 gtaaaaatga ttcgggtaat attgctgata aaaagctaat ttttcttcag cttcttgtcg
    15721 gttttctttg agtaaggctt tacccacatc gcccattcgc ccgccggaaa gaatgatgat
    15781 gccctcattc agctctgcta accattcacg ttccaccatc ggaaattcca catagccttg
    15841 ctgataggct ttggacaaaa tttgggtaat attatggtag cctttgttgt tcttcgccag
    15901 taatgtcagc tcaaaataat cttcattgcc gctctcggtt ctaacataaa catctgcccc
    15961 gataatcggc ttaatccctg ctcccaatgc ttcgccatag aatttcacca acccgcaaaa
    16021 gtttataaaa tccgttaagc ccattgccac catattatta gcggcagcgg ttttaactaa
    16081 ggattttacc ttagctaaac cattaatcat tgagaaatca ctgtgaactt ttaaatgaac
    16141 gaaacgacaa tctgacatag gaatataatc taagtaaaga agtttcccct ctttagtaaa
    16201 gactgtcagg ttctaaaaag tgaagccttc tgtgaataat cccgttgggc gaatgttatt
    16261 cgcccctaca aacgagcatt attcttgctc agagttacat ttaaaatccg aatgtagggg
    16321 cgaattacat tcgccctttc agaacctaac aaccctgctt tatctaaaga agggagttaa
    16381 aattaatcac gttttttgct taacagccac caaacgatga tcaaacagag taggcttgga
    16441 attaatgctc caaccggtat aggtaaccaa gtggcaatta agcttaaatt gccaaacaca
    16501 atatttgcca catagaacat aaagccggca acaataccaa tcacaatttt cgcccccatc
    16561 gtactactac gaagcggccc gaaaataaag gagatcgcaa gtagcatcat caccgccatt
    16621 gagattggtt ggaatacttt tcgccagaag gtgatctcaa aacgtttcgg atcttgtccg
    16681 gtatctttta agaagccgac ataatctgcc aagcctgaaa tcgagagcga ctccggtttg
    16741 agtgaaacaa tgcctaattt gctaggggtt aaactggttt gccaaacttg atctggctgt
    16801 ttagcttgct ggatctgatt ttctcccaca gtcgattttt ccactttaga tagcacccag
    16861 cctttttcat cactgtaatt cgcagttcgg gcttttaaaa cagattgcaa ttcacgtttg
    16921 ttttgtcctt cgccgaattg ataaatcagt acgttatcta agcttttttc atttttaata
    16981 tgattaatat agataaatga attgccatct ttcgcccaaa acccgtcttt tgtggcaagc
    17041 attgagccgc cactttgggc aatcgaacgc atattacggg caaactgctc ggtttgtggc
    17101 acgccccatt cgccgataat catcgtaaaa atgactaacg gtaaggcagt tttcatcacg
    17161 gctaaaccaa tgcggaaacg ggaaaaaccg gaggcttgca tcaccaccaa ttcactaagg
    17221 ctcgctaggt tgcctaaacc gagtaatgag ccaagtaatg ccgcaatcgg gaaaaaggtt
    17281 tcgatatctc gtggaatagt taaaaaagta tagtatgccg cttttaagcc atcgtaagat
    17341 ccacgtccta catcacgaaa ctcttccaca aatttaataa tcgccccaag cccaatcaac
    17401 ataaacaggg ttaaaaaaat cgcggataaa atcgttttgc cgatgtagcg ttctaaaata
    17461 ttcattgaga aaaattgcat tatgccaccg ccttattggt taattttttt gcaccaaatt
    17521 gatagcgtaa cttagacata aatttactat cccacgcatt taaaataaca cctaaaacta
    17581 aaaaggcaac tgataccaac ggcattaaca cttccgcatt caacttgcct gatgcccctg
    17641 acgattttag cgagctttgt agtaagaaat agattaaata aagcaataac gccggcagta
    17701 gtttagcaaa acgcccttga cgagggttta cactactcat tggcaccgct aataatgcca
    17761 ttaacggtac agctaaaatc aaagcaagcc gccaatgaag ctcggctttt gcttccggcg
    17821 ttttggtttc cattaatttc ttgaaatcgg ctcgttgcac taatttctca tcagattcaa
    17881 cgtcttgata gcctaaataa gcagaataat tctcaaaatg tgaaatacgg aaatcggcac
    17941 tttgtggtgt accttcaaaa cgcttgctct ctgccaaggt taagacttga tccccatttg
    18001 gcaaaccttg caacgtgccg gattcagcaa caaccactga aggtttgttt ttcttctgct
    18061 gttccggctg gaaaacgtag atatcattta gactgttatt ttcaatttta tcaataaata
    18121 acacatagcc accggcagac ataaattgtc cggccgaaag agccgcaaaa cgtgggttgg
    18181 ctttcgcttc cgctaacatt tcactctgtt tattaattgc ccaaggcgta agccaaaaca
    18241 cgttataaac cgctaatgca gtggtaaaaa tcgagagaaa catcgccact ttaaccaata
    18301 gcccttgccc gataccacaa gcccgcatta cggtaatttc actttcggca taaaaccgcc
    18361 cgagggttaa taacaaggcg ataaacagtg agagtggcag cattaattgt gccattgtcg
    18421 gcatacctaa gcctaataag ctcaccacta aatctgccgg tactttacca ctcacagcag
    18481 aacttagaac acgcactaat tgctgacaaa aaaagatcag taataagata aacaatatcg
    18541 ccaattggct tttaaatatc tctttggtta aatatcggct taagatcacg ttttttctct
    18601 ataacattta caaatctgaa taccgctaaa cacaagcggt ctatttttgt taattttttg
    18661 caaagagcgc aaaataactt attcgaatcg ctaataatac ctttttcata caaaaaaatc
    18721 acctatagaa aatatcacgc acggcaaaac cgtgcgtaag tattattgtt ttttcgattt
    18781 tttcgatgat gttgctttat gagcttcaag aattaatttc ttaccttggc tatcttcaat
    18841 ttcaatctta ggtggtgctt ccgtattttg atgaaggata gctataatat tttcaccttg
    18901 tgcaatatct tcaaagtttc ctttcacacg taacttagcc gcatcaacac tagtgtcaaa
    18961 tactaagaat gtacctaatg cggtaactct aatattttta agccctatat tgtccttcgt
    19021 taccgtttta tattgaggtg cttttttccc ttttgcagcc ataatcttct cttgattagt
    19081 cgcaatatta agaatatttt gaactttagt cgcttctgct gtagattgtg cctgttctgt
    19141 taaatttggt tctccatcaa aaataacatc cccaacaaat tgcacctctt taggctcatt
    19201 ttgcaataat ggtgcaacgt ctttagctga aacaaccaaa aataaccgtt cacctatttt
    19261 ttcaaaacgg acatcaatat tggttaattg tgattcaatt tgttcattaa ttgtcttgat
    19321 cgcagtttct gtctcatttt gaagcgatat tttacgtgta atatcaacat cataagcaat
    19381 aaaaccaact tttaaacgtt gtgataactg ctgaagtaaa ttgcccacat ttccatcata
    19441 agaaagacgt aactttgcct gctcatagcg actaatttga gcatcatcat tagcgaaaat
    19501 agtgttttga gtccctaagc cgattagacc aacaacaaac gttttacccc aaaagcgcat
    19561 catttttatc tccaattatt ctcttaaatc taaaaaactc ttttagtata aagtaagcaa
    19621 acta
//
LOCUS       DANLRW010000041        19364 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.041, whole genome shotgun sequence.
ACCESSION   DANLRW010000041 DANLRW010000000
VERSION     DANLRW010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 19364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19364
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.041"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(53..1093)
                     /locus_tag="PXA71_001218"
     CDS             complement(53..1093)
                     /locus_tag="PXA71_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5105339.1"
                     /translation="MQTTLSPQQIAKKHRTIEKKRSFLLLFFLLICLLSLIFDIMTGP
                     SLLPFNEVWKALFQLGEIEETTKVIVYELRLPMAIMALVVGAALGVGGAEIQTLLNNP
                     MASPYTLGLAAAAGFGASIVIAFGGFGLPTEISVPVGAFVMTLFSSAILFAFSSLGRF
                     SSAILVLVGIALLFLFQSLLSLVQFISAPEVSQQILFWLFGNLTKATWQTISIAFGVT
                     TVCILLLFKDAWKLTALRLGEARALSLGINLTWLRMKTLLIVSVMTATCISFVGIIGF
                     IGLVAPHIARMLLGEDQRFFLPGSMLVGAAFLSMSSVLSKSLVPGALFPVGIITALVG
                     VQFFFWIVLAKR"
     gene            complement(1182..1772)
                     /locus_tag="PXA71_001219"
     CDS             complement(1182..1772)
                     /locus_tag="PXA71_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein phosphodiesterase"
                     /protein_id="HDL5105340.1"
                     /translation="MNFLTHSLISLEIDTQTKQQTLYGNFAGDFYKGLIPHLNLADNL
                     KSGVVLHRSIDKISDRPDSLTTQLLQGTFGRYKGIVSDIMIDHFLAKHFQRLFAKDLN
                     EVQAQIFQQIEQQRTIFPEQFVPMFNWLQSRKALTHYADLDFLEQVFLGMSSRVKKGE
                     ILRNAVTEIWQNYTLLEEAAIQEFFTVKDRATRELS"
     gene            complement(1773..3146)
                     /gene="modF"
                     /locus_tag="PXA71_001220"
     CDS             complement(1773..3146)
                     /gene="modF"
                     /locus_tag="PXA71_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HDL5105341.1"
                     /translation="MVVDGNGSGKTTFSLALQGKISLYSGDYGNSFQHIQLLSFEQQQ
                     KMLEQIFKDRNNDSVSPDDFGLTARQVILNGSPKEALCEEYAHKLHIQHLLERPFMHL
                     STGESRKVLFCQMLVSEPDLFILDEPFEGLDQQSVQYWQQLIAELQSKMALVLIVNRF
                     NDIPDAANHIELLDNLSLILQGERAEIEQQAVYSQLKFAEENVNVPLPDSAAPLLSLP
                     ENINPFELENVNIQYGEKKILDNLSWTVQPKQHWWIKGPNGAGKSTLLSIITGDHPQS
                     YANKVRLFGKQRGSGETIWDIKKNIGYVSSQLHMDYRVNCSAMEVILSGFFDSIGVYQ
                     QVPNALQLKAMEWLERLNLSNVAKKPFRSLSWGQQRLLLITRAMVKHPSILILDEPLQ
                     GLDGINRKLVKQFIEQLVTNSQTQLLFVSHQDSDAPNCITHLFEFVPKGETNEFGFEY
                     HQTALGA"
     gene            complement(3264..4217)
                     /gene="fmt"
                     /locus_tag="PXA71_001221"
     CDS             complement(3264..4217)
                     /gene="fmt"
                     /locus_tag="PXA71_001221"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDL5105342.1"
                     /translation="MSKLNIIFAGTPDFAAQHLQALLDSEHNVIAVYTQPDKPAGRGK
                     KLQASPVKQLAEAHNIPVYQPKSLRKEEAQAELKALNADVMVVVAYGLILPEAVLNAP
                     KYGCLNVHGSLLPRWRGAAPIQRSIWAGDTETGVTIMLMDVGLDTGDMLHKVTTPIEP
                     NETSASLYAKLAELAPLALLEVLNGLANHTFKAEKQDEALSNYAEKLSKEEAKLDWQL
                     PAVQLERNIRAFNPWPFSFLTLTVDGVEQSIKIHQATVLPHQEKAAGTVINVDKTGIQ
                     IATQQGVLNITQLQPAGKKPMSVQDFLNGRADWFVSGTQLS"
     gene            4332..4943
                     /locus_tag="PXA71_001222"
     CDS             4332..4943
                     /locus_tag="PXA71_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDL5105343.1"
                     /translation="MEFFIPKADTIFEEEIKKSRFITYLRHTEGMEQAKAFWQELKIQ
                     HPHARHWCWATVAGLPNDSQQYGFSDDGEPSGTAGKPMLNYLLGSGLGEITAVVVRYY
                     GGIQLGTGGLVKAYGNGVQQALLQLERIRKVLRKNYRLQCEYEQFNTISHLISEKDIV
                     IVEQLFSDKVDLLLAFNPSEVEAFADELTQRFSGKLALIKEEI"
     gene            4947..6431
                     /locus_tag="PXA71_001223"
     CDS             4947..6431
                     /locus_tag="PXA71_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HDL5105344.1"
                     /translation="MQFFSIIRIVGILVMCFSFTMLVPATVALIYGDGGGRAFLEAFA
                     LNFMVGTLLWWLCRDNKNELRSREGFLIVVLFWVVLGLLGAVPFIILENPDLNVAESI
                     FESFSGLTTTGATVITGLDSLPKAILFYRQFLQWLGGMGIIVLAVAIIPLLGIGGMQL
                     YRAEMPGPLKEQKMRPRIAETAKALWLIYLSLTILCAVAFWLAGMTVFDAISHSFSTV
                     SIGGFSTHDASIGYFNNAAISYITVFFLLLSACNFALHFAVIDRIRDAQSRKKGGILS
                     RLYWGDYEFRFFLMVQLGLFLVCTLVLVGYGYFDNTSVTIEQALFQSVSISTTAGFTT
                     NDFSQWSSFLPTLLVLSSFIGGCAGSTGGGLKVIRVLLLYLQSKREIHRYIHPNVIQP
                     IKLGNHVLSERVVDGIWAFFSAYFFVFVICWLATIACGMETFDALNAVIASLNNLGPA
                     LGSVSSNFTQVPDSAKLVLTFAMVCGRLEVFTLLVILSPVFWKD"
     gene            6432..6959
                     /gene="hemG"
                     /locus_tag="PXA71_001224"
     CDS             6432..6959
                     /gene="hemG"
                     /locus_tag="PXA71_001224"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HDL5105345.1"
                     /translation="MKTLILYFTTDGQTKKIAERLADVITHEVELISLKDQAVDFAEK
                     IANADQIVIGASIRYGHFNPLVYQFVEQHYPALNAKKTAFYGVNLTARKDNRNTPETN
                     TYVRKFLAKVKWKPTHIEVIAGALLYLRYKPFDRLMIRFIMKITKGETDTSKEYEYTD
                     WQQVENFGKLLANQL"
     gene            7091..7486
                     /gene="mscL"
                     /locus_tag="PXA71_001225"
     CDS             7091..7486
                     /gene="mscL"
                     /locus_tag="PXA71_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HDL5105346.1"
                     /translation="MSILKEFREFAVKGNVVDMAVGVIIGGAFGKIVSSLVSDVVMPP
                     IGWLIGGVDFKDLAIEIAPAKEGAEAVMLKYGAFIQNVFDFLIIALAVFGMVKVINSL
                     KKAPVVEEAPAEPTAEEKLLTEIRDLLKK"
     gene            complement(7599..7862)
                     /gene="rpsT"
                     /locus_tag="PXA71_001226"
     CDS             complement(7599..7862)
                     /gene="rpsT"
                     /locus_tag="PXA71_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDL5105347.1"
                     /translation="MANIKSAKKRAVQSEKRRQHNASQRSMMRTFIKKVYAAVAAGDK
                     AAAQTAFVEMQKVVDRMASKNLIHANKAANHKSKLAAQIKKLA"
     gene            8126..9700
                     /gene="murJ"
                     /locus_tag="PXA71_001227"
     CDS             8126..9700
                     /gene="murJ"
                     /locus_tag="PXA71_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HDL5105348.1"
                     /translation="MSKKLLRSGMIVSFMTLISRILGLIRDIVVATILGTGVSADIFL
                     FANRIPNFLRRLFAEGAFSKAFVPVLAEYNADNDPNKTREFIAKVSGTLGGLVTVVTL
                     VAMIASPVVAALFGTGWFLDWLYDGPNAEKFTQASFLLKITFPYLWFITFVALSGAVL
                     NTIGKFGVMAFSPVLLNVAIIAVALWGRDYFDSPDIALAWGVFLGGLLQFLFQIPFMK
                     KEGLLVKPKWAWKDEGVTKVRKLMIPALFGVSVTQLNLLLNQVIASFLITGSISWMYY
                     ADRLIEFPLGLFGIAISTVVLPSLSRIAKNKELTEIQRGEHFQNTMDWGVRMMLLLGI
                     PAMIGMAVLAQPIIMTMFMRGKFGFEDVLATSYPLWVMCLGLNSYMLISVLANGFYAN
                     QNTKTPVKVGIIAALSNICFGLAFAPFLGYIGLALASACSALVNVSLLYVNLSKNGYY
                     KVSHKTVLFVLKLFIAACVMGALVAYFTPEIELWALMTMWQKVYWLIWLMILAGGSYF
                     ASILVLGIRKKDFRSA"
     gene            9702..10169
                     /locus_tag="PXA71_001228"
     CDS             9702..10169
                     /locus_tag="PXA71_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenylcysteine carboxylmethyltransferase
                     family protein"
                     /protein_id="HDL5105349.1"
                     /translation="MKSLKLKIPPPAWFLLCAALMWLVAQYVPVSLPNYQHTAIFFSG
                     LAVAIIGGAVAVSALWVIHQAKTTYSPFRPQHTAKLVTWGIYRKSRNPMYLSLLLGLI
                     AWALWLGAMLAWLVLPLFVWLITYFQIKPEEQILAQKFGTHYAKYCNQVRRWL"
     gene            complement(10234..12243)
                     /locus_tag="PXA71_001229"
     CDS             complement(10234..12243)
                     /locus_tag="PXA71_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDL5105350.1"
                     /translation="MDLIKKLNTGSTFRVPIFLPSLLFVSFVAVFCIIFPQQAQTSLD
                     TIKNSLFQHFSWFYIFAGSIFFLFLIFLSFSRLGDIKLGADTDEPEFGFGSWIAMLFA
                     AGMGIGLMYFGVAEPILHYLKPVQQNLTEPERMKEAMMTTFYHWGIHAWAIYGVIALA
                     LAYFGFRYKLALTIRSGFYPLLKHRISGFWGHLIDIIALCSTIFGLTTTLGFGVMQVS
                     AGFNNLGLIEQSNFTVLAIIVTVAMALAVLSAVSGVGKGVKILSEINLTLAGLLLIFV
                     IITGPTLLLFSSFTENLGYYFSSLLEMSFRTFAYEPEHQGWLSGWTVLYWAWWASWAP
                     FVGLFIAKISKGRTIREFILGVLFVPSLFNILWMTSFGSSAIWFDQQTAGALAEVSGN
                     TEQLLFTFFEQLPFGSIASFVAVIVISIFFITSADSGIFVLNSIASQGEENAPKWQSV
                     LWGALLAILALSLLYSGGLASLQTMTLIIALPFTFIMLILCIGLWKGLMVDNQYFNKK
                     FSQGSQHWAGKDWKQRLEKIINPSNKQDVRHFFIKVARPAFLELIEEFESYGLIAKMN
                     FTNEQNPKLEFEVVKENLRNFIYGIESVPRELSDLVVGDDNLPNIEQNTIYEPITYFL
                     DGRKGYDVQYMTKEELIADVLQQYERFINLAMDNSHDLMTADFNH"
     gene            12435..12970
                     /locus_tag="PXA71_001230"
                     /pseudo
     CDS             12435..12970
                     /locus_tag="PXA71_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            12998..13609
                     /locus_tag="PXA71_001231"
     CDS             12998..13609
                     /locus_tag="PXA71_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5105351.1"
                     /translation="MKYEAKPLIISPNHIQQRLHGKLLARALLIIALLMLAKFIYIAS
                     LSNYFTFYLMEKFQLNIAMAQLSLFTFLGAVALGAFVGGPIGDKIGRNAVIWFSFLGM
                     APFALLLPHADLFWTIVCAIFAGFIMSSAFSAMVVYAQEAVPGRVGLISGTMFGLMFG
                     IGGLSAAVLGFFADEYGLESIFKACAYLPLLGFAALGLPKRNI"
     gene            complement(13620..14510)
                     /gene="rarD"
                     /locus_tag="PXA71_001232"
     CDS             complement(13620..14510)
                     /gene="rarD"
                     /locus_tag="PXA71_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5105352.1"
                     /translation="MNISGKLQGWHYALLCYLTWGTFPIYWYPINQSGMPAEQILAQR
                     VLWSALFAVFLLLIFQQGRAVINAFKQPKVLGLFVLSSFMIGVNWLVYLWAIVNEHIL
                     DASLGYFINPIFNVFVGRLILKEQLNKAQLLALLFAISGILWLAIPAGQIPWVALILA
                     ASFCIYGLIRKLAPMEPLSGLALETLLMSPFAITYLCFCYHQNILVFSELNPLQMAVL
                     LCSGIATTLPLLWFAMGARRISMSLLGMLQYISPTLQFLCGVLIFNETLSAERAVGYI
                     LVWIGVGVFLLGMKKAGVKR"
     gene            complement(14592..15575)
                     /gene="epmA"
                     /locus_tag="PXA71_001233"
     CDS             complement(14592..15575)
                     /gene="epmA"
                     /locus_tag="PXA71_001233"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HDL5105353.1"
                     /translation="MNNLQLDNIDWQPTASIPHLIQRSKIITEIRKFFTDRGLLEVET
                     PILSEFSVTDVHLSTFNTQFQSPFSPEAKTLHLMTSPEYHMKRLLAAGSGPIFQLCKV
                     FRNEEAGKRHNPEFTMLEWYRPHFDMYRLINEVDDLLQQILDCEPAESFSYQFVFQTY
                     VGLDPLSATKAQLVEKARKHGLQCDDDEQRDTLLQFLFSEVVEANIGQERPTAVYHFP
                     STQAALAQISSEDHRVAERFEFYYKGLELCNGFHELDDADEQIHRFEQDNLQREKMGL
                     EPQQLDVRFLAALKAGFPNCSGVALGVDRLLMLAMDAEKIEEVISFGIEKA"
     gene            15908..17710
                     /gene="frdA"
                     /locus_tag="PXA71_001234"
     CDS             15908..17710
                     /gene="frdA"
                     /locus_tag="PXA71_001234"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HDL5105354.1"
                     /translation="MQSVNFDVAIIGAGGGGLRAAIAAAEANPNLKIALISKVYPMRS
                     HTVAAEGGSAAVIKDTDSFDNHFNDTVGGGDWLCEQDIVEYFVEHSPIEMTQLERWGC
                     PWSRREDGEVNVRRFGGMKIERTWFAADKTGFHILHTLFQTSIKYPNIVRFDEHFVLD
                     ILTDNGEARGCVAMNMMEGTLVQINANAVVIATGGGCRTYRFNTNGGIVTGDGLSMAY
                     RHGVALRDMEFVQYHPTGLPNTGILMTEGCRGEGGILVNKDGYRYLQDYGLGPETPIG
                     KPENKYMELGPRDKVSQAFWQEWRKGNTLKTAKGVDVVHLDLRHLGEKYLLERLPFIC
                     ELAKAYEGVDPAKAPIPVRPVVHYTMGGIEVDMNAETSIKGLFAVGECASSGLHGANR
                     LGSNSLAELVVFGKVAGENAARRALEVTARNQPQIDAQAKDVVARLHALANQEGNESW
                     SDIRNQMGDAMEEGCGIYRTQESMEATVNKIQELKERYKNISVKDKSSVFNTDLLYKI
                     ELGFILDVAQSIACSAVERKESRGAHQRLDYVERDDVNYLKHTQAYYNAEGTPTIKYS
                     DVKITKSQPAKRVYGAEAEAQEKVKKAAEAQAQQ"
     gene            17726..18457
                     /locus_tag="PXA71_001235"
     CDS             17726..18457
                     /locus_tag="PXA71_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005639269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HDL5105355.1"
                     /translation="MANLDKMTIEVLRYNPESDSEPHLDRYEVPYDSQTSLLDALGFI
                     KDELEPELSYRWSCRMAICGSCGMMVNGKPKLACKTFLRDYSGFMRIEPLANFPIERD
                     LVVDLSHFIDSIEAIKPYIIDNKAPEGQRTKQTPAQLEKYRQFSMCINCGLCYAACPQ
                     FGLNPEFIGPAAITLAHRYNLDNRDNGREERMKLLSSKNGVWSCTFVGYCSEVCPKHV
                     GPASAVNQGKLESAKDYVISMIKPR"
     gene            18467..18859
                     /gene="frdC"
                     /locus_tag="PXA71_001236"
     CDS             18467..18859
                     /gene="frdC"
                     /locus_tag="PXA71_001236"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HDL5105356.1"
                     /translation="MSATKRRPYVRGMKASWWKKLDFYKMYMVREATCLPTVWFCIVL
                     FYGAVALSKGTFTTDFVDFLQNPLVVILNIISLAAMLYHAATLFVMTPAVMSVMVKGK
                     HLPVSVGRNILWAATGVISVIALILVYI"
     gene            18873..19220
                     /gene="frdD"
                     /locus_tag="PXA71_001237"
     CDS             18873..19220
                     /gene="frdD"
                     /locus_tag="PXA71_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HDL5105357.1"
                     /translation="MSLDQNPKRSNEPPVWLLFSAGGMVSALFFPVVIFIIGLLLPFG
                     LVSPDNIISFAHTWIGKLAIMVLAIFPMWAGMHRIHHGLHDLKVHTPAGNVIFYGLSI
                     LYTILVIIAVVQI"
BASE COUNT         5484 a         3810 c         4332 g         5738 t
ORIGIN      
        1 ctaagtttcc acgcttaata gttacatcgt ttaagttgag catagaaaat ccttatcgtt
       61 tcgccaatac aatccagaaa aagaactgca caccgactaa tgccgtaata ataccgaccg
      121 gaaataatgc gcccggcaca aggctttttg atagcacgga tgacatcgat aaaaatgccg
      181 cacccactaa cattgaaccg ggcaggaaaa agcgttggtc ttcgcctagc aacattcggg
      241 caatatgcgg ggcaactaag ccaataaagc cgataatgcc tacaaagcta atgcaggtgg
      301 ccgtcattac agacacaatc agcaatgttt tcattcgtaa ccaagttaag ttaatgccta
      361 agctcaatgc tcgagcttcg cccaaacgca aggcagttaa tttccacgca tctttgaata
      421 ataataaaat acagactgta gttacgccaa aggcaattga gatagtctgc caagtagctt
      481 tagttaaatt accgaatagc caaaacagaa tttgttggga tacctcaggt gcagaaataa
      541 attgcaccaa tgacagtaaa gactgaaata aaaacaataa ggcaattcct accagcacta
      601 atattgccga gctaaaacgt cctaaagagg aaaaggcaaa taaaatggcg gaagaaaata
      661 gtgtcatcac aaaagccccg acaggtacag aaatttcggt gggtaaacca aatccaccaa
      721 aggcaatcac aatcgaagca ccaaagccgg ctgcagctgc taaacccaat gtataagggc
      781 ttgccattgg attattaagc aaagtttgaa tttcagctcc gccaacacca agtgctgctc
      841 caaccaccaa tgccattatt gccattggta agcgtagctc atagacaatc actttggtgg
      901 tttcttcaat ttcgcctaat tggaataagg ctttccaaac ttcattaaac ggaagcaggg
      961 aagggcctgt cataatatcg aaaatgaggc tgagtaaaca aatgagtaag aaaaagagta
     1021 ataaaaaact gcgtttcttt tcaatagttc ggtgcttttt agctatttgt tggggagaga
     1081 gcgttgtttg cataaaaatg taatgtttga gaattattat cagacaggat aagagaaaag
     1141 atcgataaat tcaagaatat ccaagatacc gactaaagta ttcaactaag ttctcgagta
     1201 gccctgtctt ttacagtaaa aaactcctga atagcggctt cttctaaaag agtataattc
     1261 tgccaaattt cggttacagc atttcttaaa atctcacctt tcttaactct tgatgacatt
     1321 cccaagaata cctgttctaa gaaatctaaa tcggcataat gagttaatgc ttttcgtgac
     1381 tgtaaccagt taaacatcgg cacaaattgt tcaggaaaaa tcgtgcgttg ttgttcgatt
     1441 tgctgaaaga tctgtgcttg tacctcattt aaatctttag caaataaccg ttggaaatgt
     1501 ttagcgagaa aatggtcgat cataatatcc gacacaatgc ctttataacg cccgaatgtg
     1561 ccttggagta attgggttgt gaggctgtcc ggtcggtccg aaatcttatc aatcgagcgg
     1621 tgtaacacca caccgctttt taagttatcc gctaaattga gatgcggaat taaaccttta
     1681 tagaaatcac cggcaaagtt gccatatagg gtctgttgct tggtttgggt gtcaatttca
     1741 agtgaaatca gcgaatgggt aagaaaattc atttatgctc caagtgcagt ttggtgatac
     1801 tcaaacccaa actcgttggt ttcgcctttc ggtacaaact caaataaatg cgtaatgcaa
     1861 tttggagcat cgctgtcttg gtgcgaaaca aaaagtagtt gcgtttggct gttagtcact
     1921 aattgttcaa tgaactgttt gactaatttg cggttaatgc cgtctaaacc ttgtaacggt
     1981 tcgtctagaa tcagaattga tgggtgtttc accattgctc gggtaatcaa aagtaagcgt
     2041 tgttgccccc acgagagaga gcgaaacggc tttttggcaa cattgcttaa attgaggcgt
     2101 tccaaccatt ccattgcttt taattgcaag gcattcggca cttgttgata cacgccgatg
     2161 ctgtcaaaaa agccagaaag aatgacctcc attgcggagc aatttacccg ataatccata
     2221 tgcaactggc tgctgacata gccgatattt ttcttaatat cccaaatggt ttcgccactt
     2281 ccccgttgtt tgccaaatag tcggacttta ttggcataag attgtgggtg atcgccggtg
     2341 ataatcgaaa gcaaggtcga tttcccagct ccattcgggc ctttaatcca ccagtgttgt
     2401 ttaggctgaa ccgtccaact taggttatct aaaatcttct tctccccata ttgaatattc
     2461 acattttcca actcaaacgg attgatgttt tccggcaggc tgagtagcgg agctgcacta
     2521 tcaggcagtg gcacattgac attctcttct gcaaatttta gctgagaata gaccgcttgt
     2581 tgttcaattt ctgctcgctc tccttgcaga attaatgata aattatctaa taactcaata
     2641 tgattggcag catcaggaat atcgttaaaa cgatttacaa tcagcactaa cgccattttg
     2701 ctttgtagtt cggcaatcag ttgttgccaa tattgcaccg actgctgatc cagcccttca
     2761 aacggttcgt ctaaaatgaa taaatccggc tcgctcacta acatttggca aaatagcact
     2821 ttgcggcttt caccggtgga aaggtgcata aacgggcgtt caagcagatg ttgaatatgc
     2881 aatttgtggg catattcctc acataacgcc tcttttggac tgccatttaa aattacttgt
     2941 cgtgcggtta agccgaaatc atcgggcgag acactatcgt tgttccgatc tttgaaaatc
     3001 tgctccaaca ttttttgttg ttgctcgaaa gagaggagct gaatatgttg gaacgaatta
     3061 ccatagtcgc cggaatagag cgagatttta ccctgtaaag cgagtgaaaa agttgttttg
     3121 cctgaaccgt ttccgtctac gaccacctaa aagtcattgg gttggatctg taaggcgtca
     3181 atcgtgagtt tatgttgttt aaccagtgaa aatcgggcat tggttattgt aagtgaaggc
     3241 tgtgtttgca tatatttccc gttttaactt agttgtgtcc cgctgacgaa ccaatccgct
     3301 cgaccgttta agaaatcttg caccgacatt ggttttttac ccgccggttg aagttgggta
     3361 atattcagca cgccctgttg ggtggcaatt tgaatcccgg ttttatccac attaattacc
     3421 gtgccggctg ctttttcttg gtgaggtaac accgtggctt ggtgaatttt gatactttgc
     3481 tcaacgccat caacggttaa ggttaaaaaa ctaaacggcc aagggttaaa agctcggata
     3541 ttgcgttcca gttgaactgc tgggagttgc caatccaatt tagcttcttc tttggaaagt
     3601 ttctcggcgt aattggacag tgcttcatct tgtttttccg ctttgaatgt gtggttggct
     3661 aaaccgttta acacctcaag caatgccaga ggggcaagtt ctgccagttt ggcatacaag
     3721 gaggcggagg tttcattcgg ctcaatcggg gttgtgactt tatgtaacat atcaccggtg
     3781 tctaagccaa cgtccattag cataatggtt acgccggttt ctgtatcacc tgcccaaatc
     3841 gaacgctgaa tcggagctgc tccacgccag cgaggtagta gcgaaccgtg tacgtttagg
     3901 caaccatatt taggagcatt caatactgct tcaggtagaa ttaagccgta agctaccacc
     3961 accatcacat cggcatttag ggctttcagt tcagcttgag cctcttcctt acgcagggat
     4021 ttgggttggt aaacaggaat gttgtgagct tcggccagct gttttaccgg gctggcttgc
     4081 agttttttgc ctcgcccggc aggtttatcc ggctgagtat aaaccgcaat cacgttatgc
     4141 tcggaatcta ataaggcttg taaatgttga gcggcaaaat caggcgtgcc ggcaaaaata
     4201 atattgagtt ttgacatatt ttttattcgt tcaagttatc aatgaaagac ttattaaacc
     4261 attaaacagc acaaataaaa agtggcttga atatggtatc attgccacat tcaagataag
     4321 agaatcaaac aatggaattt tttatcccca aagcggatac aatttttgaa gaagagatta
     4381 aaaaaagccg atttatcacc taccttcgcc atactgaggg tatggagcag gccaaggcat
     4441 tttggcagga gctgaaaatt cagcatccgc acgcacgcca ttggtgttgg gcaacggtgg
     4501 caggcttgcc gaatgattcg caacaatacg gcttttcgga tgatggagaa ccgtctggta
     4561 cagcaggtaa gccaatgctc aattatttgc ttgggtcagg cttgggggaa attacagcgg
     4621 tggtggttcg ctactacggt ggtatccagc ttggcaccgg cggcttggtg aaagcctatg
     4681 gcaatggggt gcaacaggcg ttattgcagt tggagcggat tcgcaaagtt ttgcgaaaaa
     4741 actaccgctt gcaatgtgaa tatgagcagt ttaataccat ttctcatctc attagcgaga
     4801 aagatattgt gattgtcgag caacttttta gcgataaagt ggatttgttg ctggcattta
     4861 acccgagcga ggttgaggcc tttgcagatg aattaaccca acgcttttcg ggcaagctcg
     4921 cattaataaa agaagaaatc tagtctatgc aatttttttc cattattcgt attgttggca
     4981 ttttggtgat gtgtttttca ttcacaatgc ttgtgccggc aacggtcgcc ctaatttatg
     5041 gcgatggcgg tgggcgggcg tttttagaag ccttcgctct gaattttatg gtcggtacgc
     5101 tgctttggtg gctgtgccgt gacaacaaaa acgagctacg ttcccgtgag ggctttttga
     5161 ttgtagtact gttttgggtg gtgctgggtt tgctcggggc tgtgcctttt attattttgg
     5221 aaaaccccga tttaaacgtg gcggaatcca tttttgaatc cttttccggc ttaactacaa
     5281 cgggtgcaac cgtcatcacc ggcttagata gcttgcccaa agcgatttta ttctaccgcc
     5341 aatttttgca atggctaggg ggaatgggga tcattgtgtt agcggttgcg attattccgc
     5401 tgttaggcat tggtggaatg caactttatc gtgcggaaat gcccggaccg ctcaaagagc
     5461 agaaaatgcg acctcgcatt gcggaaacgg caaaagcgtt gtggctgatt tatctcagcc
     5521 tgacgattct gtgtgcggtc gcattttggc tcgccggaat gacggtgttt gatgccattt
     5581 cgcatagctt ttccacggtt tcgattggcg gattttctac ccacgatgcc agcatcggct
     5641 attttaataa tgcggcaatt agctatatta ccgtgttttt cctgctactt tctgcctgca
     5701 actttgcatt gcattttgcg gtgattgatc gcatacgaga tgcacaatca cgcaaaaaag
     5761 ggggtatttt aagccgcttg tattggggcg attacgagtt tcgttttttc ttgatggtgc
     5821 agttagggct tttcttggtt tgtaccttgg tgttagtggg ttacggttat ttcgataata
     5881 cctctgttac gattgagcaa gcgttgtttc aatcggtgtc catttccacc acggccggct
     5941 ttactaccaa tgattttagc caatggagtt cgtttttacc cacgctgttg gtgctgtctt
     6001 catttatcgg tggttgtgcc ggctcaaccg gtggcggctt gaaagtgatt cgggtgttgc
     6061 tgctttattt acaaagtaaa cgtgaaatcc accgctacat tcaccccaat gtgattcaac
     6121 cgattaaatt aggcaaccac gttttatcgg aacgggtggt tgatggtatt tgggcgtttt
     6181 tctcggcgta ctttttcgtg ttcgtgatct gctggcttgc taccatcgct tgtggaatgg
     6241 aaacctttga tgctctaaat gcggtaattg cctcactaaa taatctaggt cctgcattag
     6301 ggagcgtgag cagcaatttc acccaagtgc cggacagtgc caagttagtg ctgacttttg
     6361 caatggtatg cggacgtctg gaagtgttta ccttgctggt gattttaagc cctgtttttt
     6421 ggaaagatta aatgaaaacc ttaattctct attttacgac cgatggtcaa accaaaaaaa
     6481 ttgccgaacg attggcggac gtgattactc acgaagtcga gctgatttcg ctaaaagatc
     6541 aagcggtcga ttttgccgaa aaaattgcaa atgccgacca aattgtcatc ggtgcttcaa
     6601 ttcgctatgg gcattttaac ccgttggttt atcagtttgt ggaacagcat tatccggcat
     6661 taaacgccaa gaaaactgcc ttttacggtg tgaatttgac cgctcgcaaa gataatcgaa
     6721 acacgcctga aaccaatact tatgtgcgta aatttttagc taaagtgaaa tggaaaccaa
     6781 cccacattga ggtaattgct ggggcattac tttacctacg ctataagcca ttcgaccgat
     6841 tgatgattcg ctttattatg aaaattacca aaggcgaaac cgatacctcc aaagaatatg
     6901 agtacaccga ttggcagcag gtggagaatt ttggcaaatt attagccaat cagttataat
     6961 caaactgatc taaatcaaaa aaatgtaaat ttatttaaat gttgtagaaa ttttaaagat
     7021 tttgattata atcgccagcc cacgttcttg cgaagaccgt gtttaatcat tgaatgaaag
     7081 gaaagccccc ttgagtattt taaaagagtt ccgtgaattt gcggtaaaag gtaatgttgt
     7141 tgatatggct gtcggtgtga ttatcggcgg tgcattcggt aaaattgttt cttcattagt
     7201 tagcgatgtt gtaatgccac ctatcggttg gttaatcggt ggcgtggatt tcaaagattt
     7261 agccattgaa atcgccccgg caaaagaagg tgcggaagca gtgatgttaa aatacggtgc
     7321 atttatccaa aacgtatttg atttcttaat tatcgcactt gcggtattcg gtatggtgaa
     7381 agtgattaac tcactgaaaa aagctccagt tgtagaagaa gctcctgcag agccaacagc
     7441 ggaagagaaa ttattaactg aaatccgtga tttattgaaa aaataattaa ctgattttga
     7501 aacaagggct attttagaat atctagaata gccctttgtg ttatggttaa aaagaaaaaa
     7561 accaacataa agtcggtttt tttcatatct gttcgatatt acgctaattt tttgatttgc
     7621 gctgctaatt tagatttgtg gttagccgct ttgttagcgt ggattaagtt tttagatgcc
     7681 atacggtcta caactttttg catttcaacg aaagccgttt gagctgctgc tttatcgcct
     7741 gctgctactg ctgcatatac ttttttgatg aatgtacgca tcattgagcg ttggcttgcg
     7801 ttgtgttggc ggcgtttttc agattgaacc gcacgttttt ttgctgactt gatattagcc
     7861 aaggtcaaac tcctaaaata tctgtgtaaa aattagatat aaacaaaatc gttgtttata
     7921 ttgcctatcg atagttttta attcattttc aacgagacac gtgcttgaaa ataacaccgt
     7981 ttttctgata gaaaacgata gggcgagatt ttaacagttt ttttctgatt ttcctataac
     8041 aaactgctaa aattatgatc gatttttagg atcagactac aagcggtctg atttttcaat
     8101 aattttacta atattactct ttattatgag caaaaaactt ttaagatcag gaatgatcgt
     8161 aagctttatg accttaattt ctcgcatact cggtttgatt cgagacattg tggtggcaac
     8221 cattttaggc acaggcgtga gtgccgatat tttcctgttt gccaaccgta ttcccaattt
     8281 tcttcgccgt ttgtttgccg aaggggcatt ttctaaagcc tttgtgccgg tgttggcgga
     8341 atataatgcg gataacgatc caaacaaaac gagagaattt attgccaaag tatcgggtac
     8401 attaggaggt ttggtaactg ttgttaccct tgtggcaatg attgcctcgc ctgtggttgc
     8461 cgctcttttt ggtacaggtt ggtttttaga ttggctttac gacgggccaa atgccgaaaa
     8521 attcacccaa gcctcttttt tgctcaaaat cactttccct tatttgtggt ttattacctt
     8581 tgtggcgtta tccggtgcgg tgttaaatac catcggtaag tttggggtga tggcattttc
     8641 cccggtgttg ctgaatgtgg cgattatcgc ggtagcgtta tggggcagag attatttcga
     8701 ttccccggat attgccttag cgtggggggt atttttaggc ggcttattgc aatttttatt
     8761 ccaaattcca tttatgaaaa aagagggctt actggttaag ccaaaatggg cgtggaaaga
     8821 cgaaggtgtc actaaagtcc gtaaattaat gattccggct ttatttggcg tttccgttac
     8881 ccagctaaat ttactgctaa accaagtgat tgcctcgttt ttgattaccg gctcgattag
     8941 ttggatgtat tatgccgacc gcttaattga atttccgctc ggtttatttg gaattgcgat
     9001 ttccaccgtc gtgctgccaa gcctttcccg tattgcgaaa aacaaagaac tcactgaaat
     9061 ccaacgtgga gaacactttc aaaacacaat ggattggggg gtgagaatga tgctgttgct
     9121 cggcattccg gcaatgatcg gtatggcagt gctggctcag ccgattatta tgacaatgtt
     9181 tatgcggggt aaatttggtt ttgaagatgt gctggcaacc tcttatccac tttgggtaat
     9241 gtgcttgggg ttaaacagct atatgttgat tagcgtgctg gcaaacggtt tttatgccaa
     9301 ccaaaacacc aaaacaccgg taaaagttgg gattattgcc gccttaagta atatttgctt
     9361 tggcttggcg tttgctccgt ttttgggata cattggttta gcgttagctt ctgcgtgttc
     9421 ggcattagtg aatgtgagct tgctgtatgt gaatctctca aaaaatggtt actataaagt
     9481 aagccataaa accgtgcttt ttgtgttgaa actattcatc gccgcttgtg taatgggggc
     9541 gttggttgcc tatttcacgc ctgagattga actttgggca ttaatgacaa tgtggcagaa
     9601 agtgtattgg ctgatttggc tgatgatctt agccggcggt agttattttg cctctatttt
     9661 ggtattaggc attcgtaaaa aagatttccg ctcggcataa aatgaaatca ttaaaactga
     9721 aaatcccgcc gccggcttgg ttcttgcttt gtgccgcttt aatgtggctg gtagctcaat
     9781 atgtgccggt gagcttgccg aattatcagc atacagccat attttttagc ggtttagctg
     9841 tggcgataat tggcggagcg gttgccgtct cggcactttg ggtcatacac caagcgaaaa
     9901 cgacatacag tccttttcga ccacaacata ccgctaaatt ggtcacttgg ggcatttacc
     9961 gcaaaagccg aaacccaatg tatctttcgt tactattagg tttgattgcg tgggcattat
    10021 ggttgggggc aatgttggcg tggctggttt taccgctgtt tgtatggttg ataacctatt
    10081 tccaaatcaa gccggaagag caaattttag cccaaaaatt cggcacacat tatgccaaat
    10141 attgcaacca agtaaggcgt tggctttaaa tgcaagcggt gagattttgt tggaaatttg
    10201 caaatttttc cgaaaatctc accgcttgtg gggttagtga ttgaaatcag ccgtcattaa
    10261 gtcgtgcgag ttgtccatcg ctaaattgat aaagcgttca tactgttgca gcacgtcggc
    10321 aatcaactct tctttggtca tatattgcac atcataacct ttccgcccgt ctaagaaata
    10381 agtaatcggc tcgtaaatgg tattttgctc aatgttcggt aggttgtcgt cacctaccac
    10441 caaatccgat aattcccgtg gcacactttc aatgccgtaa atgaaattgc gtaaattttc
    10501 tttcaccact tcaaactcta atttcgggtt ttgttcgttg gtgaaattca ttttagcgat
    10561 taagccatag ctttcaaatt cctcgataag ttctaaaaat gctggtctgg caactttaat
    10621 aaagaagtga cggacatctt gcttattgct tgggttgatg attttctcca agcgttgttt
    10681 ccaatcttta cccgcccaat gttggctacc ttgcgagaat tttttgttga agtattggtt
    10741 atctaccatt aatcctttcc ataagccgat acagagaatc agcataatga aggtaaatgg
    10801 taaggcgata atcagtgtca ttgtttgcag agaagccaag ccacccgaat agagtagtga
    10861 taacgctaag atggctaata atgctcccca aagcacgctt tgccatttcg gtgcattttc
    10921 ttcgccttgt gaagcaatgc tgttgagaac aaaaatcccc gagtcggcag aggtgataaa
    10981 gaaaatactg ataacaatga cggcaacgaa agaggcaata gagccaaacg gtaattgctc
    11041 aaaaaaggta aataacagtt gttcggtatt gccgctgact tcagctaaag caccggcagt
    11101 ttgttgatcg aaccaaatgg cagagctgcc gaagctggtc atccataaaa tgttaaacag
    11161 cgatggaaca aatagcaccc ctaaaataaa ttcacgaatg gttctgcctt tagagatctt
    11221 ggcaataaac aaaccaacaa atggcgccca agatgcccac catgcccaat aaaggaccgt
    11281 ccagccgctt agccagcctt gatgttccgg ttcataagcg aaggtacgga aactcatctc
    11341 aagcagcgag ctaaaataat agcctaaatt ttcggtgaag cttgagaaaa gtaatagagt
    11401 tgggccggtg attatcacaa aaataagtag caatccggct aatgtgagat tgatttcact
    11461 taagatttta acccctttgc ctacgcccga aacggcagat aacacggcaa gagccattgc
    11521 tactgttacg ataatcgcaa gaacagtaaa attgctctgt tcaattaaac ctagattgtt
    11581 aaagccagca ctgacctgca tcaccccaaa gccaagtgta gtcgttaaac cgaaaatcgt
    11641 gctacaaagg gcaataatat caattaaatg cccccagaag cctgaaatac gatgttttag
    11701 taagggataa aatccggaac gaatagtgag tgctaactta tatctgaagc caaaataagc
    11761 aagagctaag gcaatcacac cataaattgc ccaagcgtga ataccccaat gatagaacgt
    11821 tgtcatcatc gcttctttca tacgctccgg ctcagttaaa ttttgttgga cgggtttaag
    11881 gtaatgcaaa ataggttctg ctaccccaaa atacattaac ccgatcccca ttccggcggc
    11941 gaataacatc gcaatccaag agccaaaacc aaattcaggc tcatcggtat ctgcccctaa
    12001 tttaatatca cccaatcggc tgaaagagag aaaaattaga aacaggaaaa agatagagcc
    12061 tgcaaaaata tagaaccagc taaaatgttg gaagagacta tttttgatgg tatcaagtga
    12121 ggtttgtgct tgctgtggaa agatgataca gaaaacggca acaaagctga caaagagtaa
    12181 actcggtagg aaaatcggta ccctaaaggt acttcctgtg tttaattttt tgattaaatc
    12241 caatgctatt tcctctattt ttgaatggtt agaggcttga atatagcaaa aagatataaa
    12301 aataacaaat ttaagacgta ttggtaataa tattgcaacc taatgggttt ggtaaaaaaa
    12361 tcgggaaatt tgaccgcttg cacattcatt atttgcgagt agaatatttt tcatttataa
    12421 aaaacgaata aagaatgcac acacaacata acgctcaaaa aatggttttg cccattttac
    12481 tgctgatttc cctttctcat ttgttgaatg atttagttca agcagtaatg gtttcgatct
    12541 atccaatgct aaaagaaaat taccaactga gttttgctca aattggtatg atttcactca
    12601 tttatcaaat taccgcatct attattcagc cgggtattgg gctttatacc gatacccaaa
    12661 accgaattta ttgcccgtca gtatgctgat tacgcttctt tccgtgattt tacttgcctt
    12721 ttcgccgaat tttggcgtgt tactgatagc cgctgcgtta atggggatag gctctgccat
    12781 ttttcaccct gaagcctctc gggtggctcg aatggcatcg ggcggtaaat ttggtacagc
    12841 tcagtcgctt ttccaagtag gtggaaacag tggatcggcg ttaggtccgc tcttagttgc
    12901 attatttatt gtgccgttag ggcaaagtgc ggtgatttgg gttgttgcat ttgtattatt
    12961 ggcattatga tgggttttat ataaagtaag ccgttgggtg aaatatgaag ccaaaccgct
    13021 cattatttca ccaaaccata ttcaacaacg cttacacggt aaattattag ccagagcatt
    13081 attaattatc gctttattga tgttagcgaa atttatttat attgcgagcc tcagtaacta
    13141 tttcaccttt tatttaatgg aaaaattcca actcaatata gcaatggcac agctctctct
    13201 atttaccttt ttaggtgcag ttgctttagg cgcttttgtc ggcgggccga ttggcgataa
    13261 gattggacga aatgcggtga tttggttctc tttcttaggt atggcacctt ttgctttgtt
    13321 gttgcctcac gcagatctct tttggacgat tgtgtgtgcg atttttgccg gttttattat
    13381 gtcatcagcg ttctccgcta tggtggttta tgctcaagaa gccgtaccag gcagagtagg
    13441 gctgatttcc ggcacaatgt tcggtttaat gtttggtatt ggcggcttaa gtgccgccgt
    13501 attgggtttt tttgcggatg aatatggctt ggagagtatt tttaaagcct gtgcctattt
    13561 gccactactt ggttttgctg cattagggct accaaaacga aatatttaac gttttatttt
    13621 tagcgtttga caccagcttt tttcataccc aataagaaaa cccccacccc aatccaaacc
    13681 agaatgtagc ctacagcacg ttcggcggaa agtgtctcat taaaaatcag cacaccgcat
    13741 aaaaattgca gggtaggtga aatatattgc agcataccga gtagcgacat tgaaatgcgt
    13801 cttgcaccca ttgcaaacca tagcaatggt aaggtagtgg caatgccgga gcagagtagc
    13861 actgccattt gtaaaggatt gagttcactg aataccaaaa tgttttggtg gtaacaaaag
    13921 cagagatagg tgatggcaaa aggcgacatc agcaaagttt ctaacgccaa accagacaaa
    13981 ggttccattg gggcaagttt acgaatcagc ccgtaaatac agaaactggc ggctagaatc
    14041 aatgcgaccc acggaatttg tccggcagga atagcaagcc ataaaatgcc gctaattgca
    14101 aacagcagag ccaataattg ggctttattc agctgctctt ttagaataag cctaccgaca
    14161 aacacgttga aaatggggtt gataaaataa cctagactgg catctaaaat atgctcattg
    14221 acgattgccc ataagtaaac cagccagttc acgccaatca taaaagaaga aagcacgaac
    14281 agcccgagta cctttggctg tttaaaggca ttaataaccg ctcgcccttg ttggaaaatc
    14341 agcagcagaa acacagcaaa tagggcagac caaagcaccc gttgagccaa aatttgctcg
    14401 gcaggcattc ccgattggtt gatcggatac caataaatcg gaaaggttcc ccaagttaag
    14461 tagcacagta gggcatagtg ccaaccctgt aatttgcctg aaatattcat tttgctttcc
    14521 taaacgagtg tacaagcggt catatttgtc gatttttttg caaattgcaa atcacaaaac
    14581 ggcataaaaa attaggcttt ttcaatgccg aaagaaataa cctcttcaat tttttccgca
    14641 tccattgcca gcattaacag cctatcaacc ccaagggcga cacctgagca gtttggaaaa
    14701 cccgctttga gtgcggcaag aaaacgcaca tctagttgct gtggctccag ccccattttt
    14761 tcacgttgca gattatcttg ctcgaagcga tgaatttgct catcagcatc gtctaattcg
    14821 tggaagccgt tacagagttc caagcctttg tagtaaaact caaaacgttc ggcaacacgg
    14881 tgatcttccg agctaatttg agctaatgcc gcttgggtgg aagggaaatg ataaacggca
    14941 gttggtcttt cttgcccgat attggcttcg acaacctcgc tgaataaaaa ttgtaacaag
    15001 gtgtcacgct gttcatcatc atcacattgc aagccgtgtt ttcgggcttt ttccacaagt
    15061 tgtgctttgg tggcagaaag cggatctaat ccgacatagg tttggaacac aaattgatag
    15121 ctgaatgatt ctgccggttc gcagtccaaa atttgttgca gtaaatcatc cacttcattg
    15181 attaagcgat acatatcaaa atgcgggcga taccactcca gcatcgtaaa ttcagggttg
    15241 tgtcgcttac cggcttcctc gttgcgaaat actttacaca gttggaaaat cggtccactc
    15301 ccagcagcaa gtagtcgctt catatgatat tccgggctgg tcatcagatg gagtgttttc
    15361 gcctcagggg aaaaaggcga ttgaaactgc gtattgaaag tcgaaagatg aacgtctgtc
    15421 accgaaaatt cgcttaaaat cggggtttct acctctaaaa gccctcgatc ggtaaagaac
    15481 ttgcggattt ccgtaatgat ttttgaacgt tggatcaggt gaggaataga ggctgttggt
    15541 tgccaatcaa tattatcgag ttgtaaattg ttcataaaaa atgaccgctt gaaaatgtga
    15601 ggctatttta gcctaaaaaa gtgagttgcc ctagttaccg atcaagaaaa ataaagagag
    15661 ggttttaact tttttgcaac aaattaaatt ttctcatttt aaacattaga aattttcttt
    15721 ctatcactgt ccaattaaga gccattctca atacctttat gaagctttat tacctttttt
    15781 gaggtagatc acaaaattac attttttatg ttacaaattt gtaaaaatag gttatctcat
    15841 tgctcaaata gtggcacaat atgattactt tttaatgaat taagttattt aactttcgga
    15901 gtgcattatg caaagtgtta attttgatgt cgcgattata ggtgccggtg gtggtggctt
    15961 gcgtgctgct attgcggcgg ctgaagcaaa tccaaatcta aaaattgctt taatttcaaa
    16021 agtttaccca atgcgtagcc atacggttgc agcagaaggt ggttcagcgg cggtaattaa
    16081 agataccgac tctttcgaca atcactttaa tgataccgtc ggtggtggtg actggttatg
    16141 tgagcaagat attgtggagt attttgtaga gcattcgccg attgaaatga cacaattaga
    16201 acgctggggt tgcccttgga gtcgtcgtga agacggtgaa gtgaatgttc gccgttttgg
    16261 aggaatgaaa attgagcgta cttggtttgc ggcggataaa accggtttcc acattttgca
    16321 tactttgttc caaacttcga ttaaatatcc gaatattgtg cgttttgatg agcattttgt
    16381 gctggatatt ctcaccgaca acggcgaagc tcgtggttgt gtggcaatga atatgatgga
    16441 aggcacactt gttcaaatca atgcaaatgc agttgtgatt gcaaccggtg gcggctgccg
    16501 tacttatcgc tttaacacta acggcggtat tgtaaccggc gacggtttat caatggcgta
    16561 tcgtcacggt gtggctttgc gtgatatgga gttcgtacaa tatcacccaa caggtttgcc
    16621 aaataccggt attttgatga cagaaggttg tcgtggtgaa ggtggtattt tagttaataa
    16681 agatggctac cgttacctgc aagattatgg tttaggaccg gaaacaccta tcggcaaacc
    16741 ggaaaacaaa tatatggaat taggccctcg tgataaggtt tcacaagcat tctggcaaga
    16801 atggcgtaaa gggaacacct taaaaaccgc aaaaggcgtg gacgtagttc acttagattt
    16861 acgccattta ggtgaaaaat atttacttga gcgtttaccg tttatttgtg aattagcgaa
    16921 agcctatgaa ggggtcgatc cggctaaagc gccgattcct gttcgcccgg tggttcacta
    16981 cacgatgggt ggtattgaag tggatatgaa tgcggaaacc tcaattaaag gcttattcgc
    17041 agtaggtgaa tgtgcttcat caggcttgca cggtgcgaac cgtttgggtt ctaactcatt
    17101 agcagagctt gtggtgttcg gcaaagttgc cggtgaaaat gcggctcgcc gtgcgttaga
    17161 agtgactgct cgcaaccagc cacaaattga tgcacaagca aaagatgtgg tggctcgctt
    17221 gcacgcatta gcgaaccaag agggtaatga atcttggtcg gatatccgta accaaatggg
    17281 tgatgcgatg gaagaaggtt gtggtattta ccgtacccaa gaaagtatgg aagcgactgt
    17341 aaacaaaatc caagagctaa aagagcgtta taaaaacatc agcgtaaaag ataaatcaag
    17401 tgtgtttaac actgatttac tctacaaaat tgaattaggc ttcattttag atgtggctca
    17461 atccattgct tgctctgcgg tagagcgtaa agaatctcgt ggggctcacc aacgtttaga
    17521 ctatgttgag cgtgatgatg tgaactactt aaaacacaca caagcgtact acaatgcaga
    17581 gggtacaccg acgattaaat acagcgatgt gaaaatcact aaatcacaac cggctaaacg
    17641 tgtgtatggt gcagaggctg aagcccaaga aaaagtcaaa aaagcagcag aagctcaagc
    17701 acaacaatag agaaggagta gtaaaatggc aaatttagat aaaatgacca tcgaagtgct
    17761 acgctacaac cctgaatcag atagcgagcc acatttagac agatatgaag tgccgtatga
    17821 cagccaaact tcacttttag atgcattggg cttcattaaa gacgaattag aaccggaact
    17881 ttcttatcgc tggtcttgcc gtatggcgat ttgtggttct tgcggaatga tggtaaacgg
    17941 taagccgaag ttagcttgta aaacattcct gcgtgattac agcggtttta tgcgaattga
    18001 gccgctggcg aacttcccga ttgagcgtga cttagtagtg gatttaagcc actttattga
    18061 tagcatcgag gcaattaaac cttatattat tgataataaa gcaccggaag gacagcgtac
    18121 taaacaaacg ccggcacaat tagagaaata tcgtcaattc tcaatgtgta tcaactgcgg
    18181 tttatgttat gcggcttgcc cacaatttgg tttgaaccct gaatttatcg gacctgctgc
    18241 gattacattg gctcaccgct ataacttgga taaccgtgat aatggtcgtg aagagcgtat
    18301 gaagctactc agcagcaaaa acggtgtttg gagctgtact ttcgtgggtt actgctcgga
    18361 agtctgtccg aaacacgtcg gccctgcttc ggctgtaaac caaggtaaac ttgaaagtgc
    18421 gaaagattat gttatctcaa tgatcaaacc gagataggag gaagaaatgt cagcaacaaa
    18481 acgtagacct tatgtaaggg gaatgaaagc cagctggtgg aaaaaactcg acttctataa
    18541 aatgtatatg gtgcgtgaag ctacctgtct tccaactgtt tggttctgca ttgtattatt
    18601 ttatggagca gttgcgttaa gtaaaggaac atttactacc gattttgtgg atttcttaca
    18661 aaatccgtta gttgttatcc taaacataat ttcattggca gcaatgttat atcatgcggc
    18721 aacacttttt gtgatgacac ctgccgtcat gtccgtgatg gttaaaggta aacacttacc
    18781 agtctcggtt ggaagaaata ttctttgggc agcaacaggc gtaattagcg taattgcatt
    18841 aatcttggtt tatatttaag aaggggaaga aaatgagtct tgatcaaaac ccaaaacgtt
    18901 caaatgaacc gccggtatgg ttgcttttta gtgctggggg aatggtaagt gcattatttt
    18961 tccctgtggt aatctttatt atcggtttat tactgccatt cgggttagta tcaccagata
    19021 atatcatttc ctttgcccat acttggatcg gcaagctcgc tattatggta ttagcgattt
    19081 tccctatgtg ggcaggaatg caccgtatcc atcatggatt acacgacctg aaagttcaca
    19141 cgccagcagg taatgtgatt ttctacggat tgtctatctt atacacaatt ctagtaatca
    19201 tcgcagtcgt gcagatttaa atgagaaaga ccatcttgta taaagcagat ggtcttttca
    19261 tttttaatat gctaacaagc ggtcgaattt ataagaaaat ttgcaaatat tagaaatttt
    19321 gccgataaaa cgatcgtttt gtattaaata tctgcaaaaa agat
//
LOCUS       DANLRW010000042        18987 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.042, whole genome shotgun sequence.
ACCESSION   DANLRW010000042 DANLRW010000000
VERSION     DANLRW010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18987
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.042"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..874
                     /locus_tag="PXA71_001238"
     CDS             <1..874
                     /locus_tag="PXA71_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PcfJ domain-containing protein"
                     /protein_id="HDL5105358.1"
                     /translation="WVRSSDKQPFILYAKYQDKMLCESKGQWRWLKKQSRIVVDQCFL
                     HVNQWQLLTEIQIPFKIPVCVICFILTNFSMISSELERSRQRRLLSIFIQYIYHYWKD
                     NGFRQLKVHLSHLRVLFQDIEDYMIHEGYLHGIPQTWKHLVSHSEQWHQHILEEQRRD
                     QHILEEQRRENDEAHQALLSTSWSSPIDICYINEIEFQPLTTGQMLFDEGQRMRHCIF
                     TYIDICSEGRYLAFSVKIANESATLGLIKHRGNWKIEQFRYACNIAVCEPMILAAAQK
                     LCKLLNKQSALPQN"
     gene            970..1602
                     /locus_tag="PXA71_001239"
     CDS             970..1602
                     /locus_tag="PXA71_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105359.1"
                     /translation="MKTKISLIAVFMLGLSGCVHQQNTAQNSDEITPMPDSLLKPQMQ
                     PLPPQDRIVSKDIYHEQTTSNTEVVRDGRYTLISIAPEEGQKYLLEQVVSVKVPNTKN
                     RFTANVQQGLRTTLTNTGLELCFPPIGEQGNAVQTLFTRPLPKVHYQFGPMKLYEALQ
                     MIAGPAYELTLNDITRTICFKARESSFQNPHKPAVAIQRQQLKPRSLRNN"
     gene            1614..2351
                     /locus_tag="PXA71_001240"
     CDS             1614..2351
                     /locus_tag="PXA71_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03759 family integrating conjugative element
                     protein"
                     /protein_id="HDL5105360.1"
                     /translation="MKRNTINIWLAVLSSVTTNALAQTTSIESSTQTLSQQQSQHQQS
                     QLSDSLKQAKEWGLTIEEWNRYTELMKGERGMWSPNLDPLTALGIEARTAEEREKYAR
                     MLAKKYYERVSKELDFDKVYRQEFEKLYPNELPFEVEPHISQSIGRVIYFTRFDNCDS
                     CKSDLSKILSYANSQTPLDIYIVGQNISDNDIRKWAAENNIDPIKVSKKLITLNHDKG
                     YWFQYSLGKMPAAYQIKQDGEWQSLVY"
     gene            2330..3094
                     /locus_tag="PXA71_001241"
     CDS             2330..3094
                     /locus_tag="PXA71_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase"
                     /protein_id="HDL5105361.1"
                     /translation="MAISRLLIVITLFAVGISDAKSKPFTGFGTEIDSYIRIAAQRYQ
                     ISEPMLRGLIKMEDGWYGNISPTGATGVGQFTVGTWNWLSETERGKQLGMRLITGKNK
                     GTYADPRRDKYTNTLATALLARWHIEQFHLRRIPATDENLYMAHNIGLDSLHRAMMGK
                     ATKEDILNMRRNGMKSWMTVRDFLNYQKGRFLAHKQEANFMLVSKQGHIHTGVSAFVY
                     PTSEMGKSVKWVEPDNKIIWVEPKSAMIWVEPTNTP"
     gene            3103..3609
                     /locus_tag="PXA71_001242"
     CDS             3103..3609
                     /locus_tag="PXA71_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5105362.1"
                     /translation="MQHKIKMLLLSLCISHSVWGDLTVIADFGGESAVRFYEALQPEH
                     DENAPNYPNSIPASVSEADILPVVSHKLSPGIIETKQFDLTGIQAIFLIGADNTSAQW
                     LQQNREKLITLNATGLVVNVRTLAELNQLREIVPEIIMLPIPGDDLAERIGIAHYPAL
                     ITETGVSQ"
     gene            3609..5813
                     /gene="traD"
                     /locus_tag="PXA71_001243"
     CDS             3609..5813
                     /gene="traD"
                     /locus_tag="PXA71_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
                     /protein_id="HDL5105363.1"
                     /translation="MSAKHTLEAWLRPPVEFFPAIVHASCAFVSAAAPWSLALHPSIG
                     YSIAAGFGALSFYRAKQGWQIVRYHQNLKRLPNYSMTSKQIPVSNKYLFVGKGFEWKP
                     IHTQRLHDCFSDNGSKYLEPSKLFKMAREYEKRHENWLTRLTSKDSRWNPVRPLPPVE
                     GIPAIHGIEPDEVDVVQSVSSRVGHTVVFGTTRVGKTRLAEVFVTQDIHRGKTPDERE
                     VVVFFDPKGDADMLKRMYAEAKRAGREDEFYVFHLGYPEISARYNPVGRFNRISEVAG
                     RISGQLSGAGNSAAFKEFAWRFVNIVARALVELGNRPNYVQISQFVQNIDSLFLDYAE
                     KFIRKTDPKIWENLATIAAGLDEKALPFGMKDRPLIFVINKYIAESAVFDPILQGLAS
                     AVRYDRTYFDKIVASLLPLLEKLTTGKISELLSPDYADILDERPIFDWESIIRKRGIV
                     YIGLDALSDATVAAAVGNSMFADLVSMAGHLYKFGTNEGLPGDMGRKTKLVKINLHCD
                     EFNELMGDEFIPLINKGGGAGVQVTAYTQTLSDIEARIGSKPKAGQTLGNFNTLYMLR
                     VKEPATAELLTKQLHEVTIKRSTVTSSTTDSSNPDDDKAFSSNTGQRISESTVPMLVP
                     ANITNLPKGQAFALLDGSKLWKIRMPLPAVDKDDMMPQSLRELTDYMRKNYHVVENWW
                     QPAFTEYTPSRDIAEAFEAMSEPQYNSRIDNQVDNFGIDEPYDIDEEENDDE"
     gene            5806..6159
                     /locus_tag="PXA71_001244"
     CDS             5806..6159
                     /locus_tag="PXA71_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5105364.1"
                     /translation="MSSTKMREENRTNLLDLPNKYRNFDGEFSASCGLDNAEELLIHS
                     QSYFIEWFQQGYSFHQFAEKFAHQGLSLWSADEISMRNTDKSKDVFAFYLAFDHNPSG
                     YILVQCQLDREDSLQ"
     gene            6156..6851
                     /locus_tag="PXA71_001245"
     CDS             6156..6851
                     /locus_tag="PXA71_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03747 family integrating conjugative element
                     membrane protein"
                     /protein_id="HDL5105365.1"
                     /translation="MSEGAKPRRKSGLISLILGKINMLLAAITVSLIFSIILEWVGIA
                     FWWPEEGHLHSQTMMLNEMQWLSDDFSQSLFAKSSTAFATLIIENVYNWLFVYTGIKE
                     WLTSPGNGSMEQWAYHYGRAYIESVIYVVITFIIRLIIIIFTSPLFLLTALSGLTEGL
                     SLRDIRKFGAGRESAYLYHHARRYIMPMMVTAWVVYLSIPFSIHPNFILVPAACLFGL
                     SICITAASFKKFL"
     gene            complement(6881..7240)
                     /locus_tag="PXA71_001246"
     CDS             complement(6881..7240)
                     /locus_tag="PXA71_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105366.1"
                     /translation="MRYLALFPVFLPSIAYPLPQAHKVGDICHAENAPYNYGGLWELS
                     LRGNLVCNYWQFLGDDERKRIESQLDEYGELPLWYSSERETEEDEYPQYWEVEDWDGD
                     DWDIETENEGTNTITDE"
     gene            7438..7764
                     /locus_tag="PXA71_001247"
     CDS             7438..7764
                     /locus_tag="PXA71_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RAQPRD family integrative conjugative element
                     protein"
                     /protein_id="HDL5105367.1"
                     /translation="MSISTSLRKGIVVLVTLSCLPAFASTEQEQLAQAIKQLEAAKLS
                     LQRAEKVAKASPKTREYFNYSAIHRDIETVKKGIQQYINPSRALPRDPNVLRTLSEDY
                     SKLRGQ"
     gene            7764..7997
                     /locus_tag="PXA71_001248"
     CDS             7764..7997
                     /locus_tag="PXA71_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03758 family integrating conjugative element
                     protein"
                     /protein_id="HDL5105368.1"
                     /translation="MSYSPVDAFSAASGIDPFRLKLMIAIIFLSMLLLAVAWALNSGY
                     KGFSFRDKSPFSLLVLFLKGVALLVCVTYFFIY"
     gene            8012..8401
                     /locus_tag="PXA71_001249"
     CDS             8012..8401
                     /locus_tag="PXA71_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2976 domain-containing protein"
                     /protein_id="HDL5105369.1"
                     /translation="MSRIKSLTKHLHSRYLAVMLVFWGTIQHAFAAGPDASKIPDFQI
                     PGVDSNTKDPMEILWIVGKSIITLFAVLLAAGAIFVVVKALISIYNEATSENGKKGWG
                     HFIVALIIGFIVIFFCLWLVKLAVGLF"
     gene            8424..8789
                     /locus_tag="PXA71_001250"
     CDS             8424..8789
                     /locus_tag="PXA71_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03750 family conjugal transfer protein"
                     /protein_id="HDL5105370.1"
                     /translation="MPEQDTTIPFLPTRLNREATVYGGMTVSEFGISAGLGFMLGLIV
                     GLFLWILTDFWLLIPAMAMLLCIATVLIGKGVVAAVKRGKPEAYLNRLIEKKMDDLFN
                     GHKFIRREGFWSIRRYKRK"
     gene            8793..9437
                     /locus_tag="PXA71_001251"
     CDS             8793..9437
                     /locus_tag="PXA71_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03746 family integrating conjugative element
                     protein"
                     /protein_id="HDL5105371.1"
                     /translation="MSQLKSQLHEKDKHIKTTRIFAFLFFIIILVLAGVIYTFPSRLT
                     IYNPPDLRAGSQRAWWEIPKPTIYAFSYQIFQQMNRWMTNGEEDYEKNITALKPFLTP
                     HCEAFLRQDYKDRLRNNELRSRTRMVYEITGRGYSEDKVTVFSEDNWAVNLDLSVDEH
                     FQGQPVKRVYIRFPISIVRMDIDSVKNPWGLGFNCYHSIPKLLEGVEPKTEEKK"
     gene            9437..10318
                     /locus_tag="PXA71_001252"
     CDS             9437..10318
                     /locus_tag="PXA71_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03749 family integrating conjugative element
                     protein"
                     /protein_id="HDL5105372.1"
                     /translation="MKRLPILFASLLISFSGSSFADVLMKWERKPLPIALQVEKERII
                     FVDKNVKVGYPAELDGKLRIQSTGGAVYLKALETFPSTRIEFRDVSTGEIFLFDIVSA
                     TKVANPEESIRMVFDSAVEKQSFSTNRDDEPDLSLTGTRPQLPIPAALTRYAAQSLYA
                     PLRAVEPLEGVRRVAHRLPKKITTLLPAYSIEATPLISWQLDEYVVTAIRLQNKGNSQ
                     ITLDPRELQGQFYAATFQHNWLGGYGGNEDTTTLYLVTEGYANNALIPETHPVKPVGK
                     KVKKTTKVETKPTQSAK"
     gene            10330..11784
                     /locus_tag="PXA71_001253"
     CDS             10330..11784
                     /locus_tag="PXA71_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL5105373.1"
                     /translation="MKANKALFVILGIVFTLVGGIVYALFWRSDTPQEPTEQEILDIS
                     IKDLTPEQVRSMGIQGDTPIDTLRTLVTTVKSNERRMDELIDENRQLKQKEDLVNGRI
                     SDAVNNETRKLQEQIADLKMQLFDMATHVNNKSTAQESTPQAEAQPSMTTNKGFGTAG
                     DKLPIGGASMPNVDIGGMYWVEPSDQIGLDAGGKAVSGNTLATKFGFPNDFKGGQTTG
                     NTEKKGLPFFPETDVVTGSQGTTGNSRGKNQITPVYTVPSNSTFLDSVAMTGLIGRIP
                     IDNKVSDAYPFKVLIGRENLIANGIELLDVEGAIVSGTATGDWTLSCVRGDVKSMTFV
                     FNDGRIVSTTNKGNSENIGWLSDSSGIPCVPGERKTNAPEYLGTNFFLAAASAAAQGF
                     SQSQTTTVVDGNSVVGAVTGDQGKFILGQAIGGGLKESADWFRKRFAENFDAVYVPPG
                     HRVAIHIEKEIEIDYNSKGRKVKYGNTSTNTQLD"
     gene            11797..12195
                     /locus_tag="PXA71_001254"
     CDS             11797..12195
                     /locus_tag="PXA71_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03751 family conjugal transfer lipoprotein"
                     /protein_id="HDL5105374.1"
                     /translation="MKALYCIMMSALLITGCTTSTEELLPANGSTMRDIWDKGAGNND
                     LHLYRSQQGRTLDPVDYIPNTEQRAYTRTAENEINNLFPRLPNPDLIMYVYPHQTRSG
                     EPLSIPGYSTVLPFYGRVQYAQPGDRTRGL"
     gene            12195..15032
                     /locus_tag="PXA71_001255"
     CDS             12195..15032
                     /locus_tag="PXA71_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer ATPase"
                     /protein_id="HDL5105375.1"
                     /translation="MMSFLSEVFSSFKPTKTEVISSEPNENSGESDIIQNKMSEVNGE
                     VQPLKRSGKLTLSQHHRRLYSQAPSFIDHLPWGEYLNQHGVILLDDARSVGAVFDIKP
                     IGTAGRSIEFLSRIRNLVKDALQDSFDELDINPYVVQFYCQDSDDLQPYIDQLRNYIS
                     PIAQNSAFSEEWLRVQAKHFKDIGKPEGLFIDDRVTNTAWSGRIRSTKMVIYRYVDKS
                     NDSNENLIIEQLNNACSRINGALTTAGLQLQRLDGEQIRQWLLRWFNPNPSINFEGLS
                     NNDCYHLFGKQTSNDDLPLAFTDFSEDLFYSQPRNEGSYWYFDGQPHEVVVVNNLRKQ
                     PEVGLMTGEITRGRNINALFDLLPESTIMAITIVIHPQDKLEAHLEKISSRAVGENFE
                     SKYLKEDCQTVQAYLKEGHKLYQAAIAFYVRGKDEKELRTRSRQLRTILLSNNLEPVK
                     ENAEIAPLNSYLRWLPMNFNPQMDAKSHYYTKYYFVQHLANLLPIFGRDTGTGNPGIT
                     YFNRGGAPFNFDPFNRKDRTKNAHKLLLGPTGSGKSATLCGQLCQAMAVYRPRTFVVE
                     AGNSFGLLADYAERFGLTVNRITLAPNSGIVLPLFSEAHRLLDMELNPEDVPEDIEDN
                     DDTDDEGDMQRDLLAEMELTARLMITGGEKKEDEKMSRADRAAIRRAILNAARQTKSE
                     GRQTLTEDVKKALEAISRDENTREERRTRLAEMAESLEMFCTGVNGQFFNREGEIWPE
                     ADLTLVDLAMFAREGYEAELAISYISLINHINSLGEKYQHSDRMILNVTDESHIITAN
                     PLLAKFLVKGSKMWRKLGIWLWLATQNMDDFPNEAAKLLSMVEWWELLNVSASEIDEI
                     NRFRKLSEAQKTMLLSAKKSDRKYTEGVVLATNMEALFRVVPPSLFLALGMTEKHEKA
                     ERRQLMMQHGYSELDAALEVAARIDKARGIA"
     gene            15032..15460
                     /locus_tag="PXA71_001256"
     CDS             15032..15460
                     /locus_tag="PXA71_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105376.1"
                     /translation="MMKQHYRLFNVGPQKSSLGIVSSAVETQLLGFCEQIRQLIGIGK
                     QITLFPHRVVQNHWAIELSGEKGSVHLLLNVTGRSLLPTSNYREWPARLVIEIADHVD
                     AYWFATFLAQQLDLKSNLFFLSTSIVDNSMHNEVTDTNEA"
     gene            15450..15767
                     /locus_tag="PXA71_001257"
     CDS             15450..15767
                     /locus_tag="PXA71_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5105377.1"
                     /translation="MKPDTTMPKMKKVRAVLKTTLIIIGIILLLLIVGWLAMTYFPTT
                     NFQAWFYETRYAWLGWRFVLYGVIWFLMVKLNRRGQMPLKARLMILSAIPLIEGINLL
                     YLL"
     gene            15778..17295
                     /locus_tag="PXA71_001258"
     CDS             15778..17295
                     /locus_tag="PXA71_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HDL5105378.1"
                     /translation="MTFTVDSYLEYFLTLLAWIINNNIFAVLVQTGLFILPLIFVLIG
                     TWMEVKKQGEDEGNKGDLLITWLSLKFYPAMFVVVLVLAPMIPINLNNIELNVERSKA
                     CGYRIPTSPEDSGYNQMNSELGNQQARVPLWWGLFHQINKGVTHALTASIPCKPDLRQ
                     VRFEVQHEKINNPALLTEVRLFVQQCYVPARQKIQSSQLSLTPAQVRETSWLGGRILL
                     TNSELYPRYRAQQPHSLFPYNASRDNGLPNNGEGGFPNCAEWWDTANTGLKDRLLADV
                     KQNFSAKVIDFFSSKENADESILRTVLRAENMDISRGKVYPGYGGNLDPTFANATTRL
                     TSSVGSLAASFAAFPAFDAMRQALPMVHAFMLMAVIIITPLVIVMSGYSLKTLVTLTF
                     VSFALVSLTFWWELARWLDSWLLSALYDSSAHSRINPYFLENTQDDFIVNFVMGSMFL
                     VLPAIWLGSMSWAGVKIGDIAAGFTTDSLDSKSAGSQGGNLVKKGGKEISAGFNK"
     gene            complement(17348..17728)
                     /locus_tag="PXA71_001259"
     CDS             complement(17348..17728)
                     /locus_tag="PXA71_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105379.1"
                     /translation="MKFIDFGKQLAKPVKFIKQRTAFLPKPLQQAVVFAVIFAGLPLF
                     LVGFTVLRILNGTPVEDISTNDVAYNPNHVENTVNEIEDDSEDSKPEDLWDVIADQDE
                     NQLDGYRDGYFGYGLYQGGYFVKR"
     gene            complement(17752..18417)
                     /locus_tag="PXA71_001260"
     CDS             complement(17752..18417)
                     /locus_tag="PXA71_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4852 domain-containing protein"
                     /protein_id="HDL5105380.1"
                     /translation="MCKKAFPLWGLIFGLLLSTSAFSVSKNFNYQNILMESLHFSENI
                     ELSSLSKDWLLYSDRNTYHKYQNDEFEFQDKIEQAGKKLQKLVDDRKSEEAPIVFTIP
                     VNSEFGNYDFEQGKFEYQPLMNGHMYISSNQYTENLPRKINLYVSNPEFIDGIPMGKD
                     KAKEFLQKRKNSLGNINRSVILYVDVQFEKAEGLDNLTGKVLSYSVKDNKDKVIYSSR
                     QKQ"
     gene            complement(18636..18881)
                     /locus_tag="PXA71_001261"
     CDS             complement(18636..18881)
                     /locus_tag="PXA71_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105381.1"
                     /translation="MTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKEFIE
                     PGATIRRSNDQPSIGSVDCDPRKKIHYKFDVHLMNTL"
BASE COUNT         5821 a         3628 c         3915 g         5623 t
ORIGIN      
        1 ttgggtaaga agcagtgata aacagccctt tattttgtat gctaaatacc aagataagat
       61 gttatgtgaa tcaaagggtc aatggagatg gttaaaaaaa cagtcgagaa tagttgtaga
      121 tcaatgtttt ctacatgtta atcaatggca gttactaaca gaaattcaaa ttcccttcaa
      181 gatcccagta tgtgtcatat gtttcattct tactaatttt agtatgatca gcagtgaatt
      241 agaacgttct agacaacgtc gattactttc tatttttatt caatatatct atcattattg
      301 gaaagataat gggtttagac aattaaaggt gcatctttct catctgagag tgctttttca
      361 agatattgaa gattacatga tacatgaggg atatttacat ggtatacctc agacttggaa
      421 acatttggtt tcacatagcg aacaatggca tcaacacata ttagaagagc aacgaagaga
      481 tcaacacata ttagaagagc aacgaagaga aaatgatgag gctcaccaag cacttttatc
      541 tacatcttgg tcatctccaa ttgatatttg ctatatcaat gaaattgaat ttcaaccttt
      601 gacgacggga caaatgttat ttgatgaagg acaacgtatg aggcattgta tttttacata
      661 catagatatc tgctcagagg ggagatactt agctttctcc gtaaaaatag ccaatgaatc
      721 agctacttta ggattaataa aacatagagg aaactggaaa attgaacaat ttcgttatgc
      781 ctgtaatatt gcagtttgtg agcctatgat tttagcagca gctcaaaaac tatgtaaatt
      841 acttaacaaa caatcagcct tacctcaaaa ttaattttat ctcccaatca acaatagaat
      901 aaatcattca aaatcagcaa tgacttcgcc atagttggct tagattcctt tcacacttgg
      961 agagattaaa tgaaaacaaa aatatcctta attgctgttt ttatgcttgg tttaagtggt
     1021 tgtgttcatc aacaaaatac tgctcaaaac agtgatgaaa tcacacctat gcctgattca
     1081 ttactaaaac ctcaaatgca accattacct ccacaagacc gtatcgtgtc caaagatatc
     1141 taccacgaac aaactacctc gaataccgaa gtagtacgtg acggacgtta caccttaatc
     1201 agtattgctc ctgaggaagg acaaaaatat ctgcttgaac aagtggtatc ggtaaaagtg
     1261 cctaatacta aaaatagatt cacagccaat gttcagcaag gcctccgtac aacattaacc
     1321 aatacagggt tagaactgtg ctttccacca ataggtgaac agggcaatgc agttcaaacg
     1381 ctttttactc gcccacttcc gaaagtccat taccaattcg gtccgatgaa attatatgaa
     1441 gctctacaaa tgatcgcggg accggcttat gaattaacac ttaatgatat tactcgtacg
     1501 atttgcttta aagctcggga aagctcattc caaaatcctc ataagcctgc tgttgctatt
     1561 caacggcaac aattaaaacc gaggtcattg aggaataatt gagggaaact ccaatgaaac
     1621 gaaatactat caatatatgg ttagccgtac tctcttcagt gactacaaat gctcttgctc
     1681 aaactacatc aatagaaagt agcacacaga ccttatcgca acagcaaagc caacatcaac
     1741 aatcacaatt aagtgatagc ctaaaacagg caaaagagtg gggattaacc attgaagaat
     1801 ggaatcgcta caccgaatta atgaaaggtg agcgtggtat gtggtcgcca aacttagatc
     1861 ctcttacagc attaggtatt gaagcaagaa ctgctgagga gagagaaaaa tatgctcgta
     1921 tgttagcaaa aaaatactat gaacgtgtgt ccaaagaact ggattttgac aaagtctatc
     1981 gtcaggagtt tgagaaactg tatccaaatg aacttccttt tgaagtagaa ccacacattt
     2041 cacaatccat aggtcgagtg atttatttta cacgttttga taattgcgat tcttgtaaaa
     2101 gtgatctcag taaaatcctc tcttatgcca atagccaaac accgcttgat atctatattg
     2161 tagggcaaaa catttctgat aatgatatcc gcaaatgggc tgctgagaat aatattgatc
     2221 cgattaaagt gagtaagaaa ctgattacac ttaatcatga taagggttat tggttccaat
     2281 attcattagg taaaatgccg gcagcgtatc aaataaaaca ggatggtgaa tggcaatctc
     2341 tcgtttatta atcgttatca cgctatttgc ggtcgggata agtgatgcta agtcaaaacc
     2401 ttttaccgga tttggtacag aaattgatag ctatatccgt atagcagctc agcgttatca
     2461 aattagcgaa ccgatgctaa gagggctaat aaaaatggaa gatggttggt atggcaatat
     2521 ctcacctact ggtgccacag gtgtagggca atttactgtg ggaacgtgga attggctatc
     2581 tgaaacagaa cgtggtaagc agcttggtat gcgtttaatt accggtaaga ataaaggtac
     2641 ttatgctgat cctcgcagag ataaatacac caatacgtta gcaacagcgt tattagctcg
     2701 atggcatatt gaacaattcc atttacgtcg cattccggca acagatgaaa atttatatat
     2761 ggctcataac attggtttag atagtctgca tcgagcaatg atgggaaaag ctaccaaaga
     2821 agatatctta aatatgcgtc gcaatggaat gaaaagttgg atgacagtaa gagatttcct
     2881 caattatcaa aaaggacgct ttttagcaca taaacaagaa gccaatttta tgttggtctc
     2941 aaaacagggg catattcata ctggtgtttc cgcctttgtt tatcctacaa gtgaaatggg
     3001 aaaatcagta aagtgggttg agccagacaa caaaataatt tgggttgaac ctaaaagtgc
     3061 aatgatttgg gtagaaccta caaatacgcc atagaggtaa aaatgcaaca taagataaaa
     3121 atgctattgc tcagtttatg tatatctcat tccgtttggg gcgatttaac ggtaatcgct
     3181 gatttcggcg gtgaaagtgc ggtacgtttt tacgaagctt tacaaccgga acacgatgag
     3241 aatgcaccga actatccgaa ttctattcca gcttcggtta gcgaagctga tattctacct
     3301 gtagtctctc ataaactgtc tcctggtatt attgaaacaa aacaatttga tttaacagga
     3361 atacaagcga tttttttaat tggagcagat aatacctcag ctcaatggtt acagcagaat
     3421 cgagaaaagt tgatcacgtt aaatgccact gggcttgttg tgaatgtccg aacattagca
     3481 gagctgaatc aattacgaga aattgtgcca gaaataataa tgctaccaat ccccggagac
     3541 gaccttgcag aacgaattgg tatcgcacat taccctgccc tgattactga aaccggagtt
     3601 tcacaataat gtcagctaaa cataccttgg aggcgtggtt acgccctcct gttgagtttt
     3661 ttccggcaat tgttcatgct tcttgtgctt ttgtcagtgc tgctgcgcct tggtctctag
     3721 cactccatcc aagtatcggc tatagtattg cagccggttt cggtgcgttg agtttttatc
     3781 gagcaaaaca aggatggcaa attgttcgtt accatcaaaa tctgaaacgt ttaccgaatt
     3841 attcaatgac gagtaaacaa attccggtca gtaataagta tctatttgtc ggcaagggat
     3901 ttgaatggaa acctattcac actcaacggc tacacgattg tttttcggat aacggttcaa
     3961 aatatctgga gccttctaag ctatttaaaa tggctcgtga gtatgaaaaa cgccacgaaa
     4021 attggctaac acgtcttacc tcaaaggata gccggtggaa tccggttaga cctctgccac
     4081 cggttgaggg tattcctgct atccatggaa ttgagccgga tgaagttgat gtcgttcaat
     4141 ccgttagctc tcgggttggg catacggtag tattcggtac aacacgtgtc ggtaaaactc
     4201 gtttagctga ggtctttgtt acccaggata tccaccgagg caaaacaccg gatgagcgtg
     4261 aggttgttgt ctttttcgat ccgaaaggcg atgccgatat gctcaaacga atgtatgcag
     4321 aagcaaagcg agctggaaga gaagatgagt tttatgtttt ccatttggga tatcctgaaa
     4381 tttcggctcg ctataaccca gtgggacgtt ttaatcgtat atcagaagtc gctggacgta
     4441 tttcaggaca actcagtgga gccggtaact cagcggcatt taaagagttt gcttggcgat
     4501 ttgtcaatat agttgcacgt gcattagttg aattaggaaa tcgtccaaac tatgttcaga
     4561 tttcccaatt tgtacaaaac attgattcat tattccttga ttatgcggaa aaatttattc
     4621 gtaaaactga ccctaaaatt tgggaaaatt tagcgacaat agccgcagga ttagatgaga
     4681 aagctcttcc ttttggaatg aaagatcgcc ctctaatttt tgtgatcaac aaatatatcg
     4741 ctgaaagtgc agtgtttgac ccgattttac aaggactcgc cagtgccgtg cggtatgacc
     4801 gtacctattt tgataaaatt gttgcttcgt tattgccgtt attggagaaa ttaacgaccg
     4861 gaaaaatttc cgaactttta tctccggatt atgccgatat tttggatgaa cgccctattt
     4921 ttgactggga atccattatc cgtaaacgag gaattgttta tattggtttg gatgctctct
     4981 ccgatgctac agttgctgcc gcagtcggaa acagtatgtt tgcggattta gtatcaatgg
     5041 caggtcattt gtataaattt gggacaaatg agggattgcc gggtgacatg ggcagaaaaa
     5101 ccaaactggt gaaaatcaat cttcattgtg atgaattcaa tgaattgatg ggcgatgaat
     5161 ttatccctct catcaacaaa ggtggtggtg ccggagtaca agttactgct tatacgcaaa
     5221 cgctctccga tattgaagcc cgtattggca gtaaaccgaa agcgggacaa accttaggta
     5281 actttaatac cctatatatg ctcagggtaa aagaacccgc tacggcagaa ttgcttacaa
     5341 aacagttaca cgaagtgacg attaagcgta gcacggtcac gtccagtacg actgactcca
     5401 gtaacccgga tgatgacaag gcatttagct caaatacagg gcagcggatt agtgaaagta
     5461 ctgttcctat gctggttcct gccaacatta ccaatttacc aaaaggacaa gcattcgctt
     5521 tactggatgg tagtaaatta tggaaaattc ggatgccgtt accggctgtc gataaagatg
     5581 atatgatgcc tcaatctcta cgagagctga cagattatat gcgtaaaaac tatcacgttg
     5641 tcgaaaattg gtggcaacca gcatttacag aatatacgcc gtcccgagat attgcagaag
     5701 cttttgaagc gatgtcagag cctcaatata actcacggat agacaatcag gtcgataatt
     5761 tcggcataga tgaaccctat gatattgatg aagaggaaaa tgacgatgag tagtaccaaa
     5821 atgagagaag aaaatagaac caacctctta gatttaccca ataaataccg taattttgat
     5881 ggcgagtttt cagcttcttg tggactagac aatgccgaag agctccttat tcatagccaa
     5941 tcctatttta tcgagtggtt tcaacaaggc tactctttcc atcaatttgc tgaaaaattt
     6001 gcacatcaag gactttcatt atggtctgct gatgaaatat ctatgcgtaa tactgataaa
     6061 tctaaagatg ttttcgcttt ttatcttgca tttgatcata atccttctgg ctatattctt
     6121 gttcaatgtc agctcgatcg ggaggatagt ctgcaatgag tgaaggagct aaacctcgtc
     6181 gaaaatcagg tttaatcagc ctgattttgg gaaaaataaa tatgttgctt gctgcaatta
     6241 cagtatctct catattcagc attattttag agtgggtagg aattgcgttt tggtggccgg
     6301 aagaaggaca cttgcatagc caaacgatga tgctcaatga gatgcaatgg ctatcagatg
     6361 atttctctca aagcctgttt gccaaatctt ctactgcttt tgcaacattg attatcgaaa
     6421 atgtctataa ttggttattt gtttatacgg gtattaagga gtggctaact tcaccgggta
     6481 acggtagtat ggaacagtgg gcatatcact atggtagagc ctatattgag tctgttattt
     6541 atgtcgtgat cacctttatt attcgcctca ttattattat ttttaccagt cccctctttc
     6601 tattgaccgc actttctggt ttaaccgaag gattatcatt acgggatatt cgaaaatttg
     6661 gtgccgggcg ggaatcagcc tacctatacc accacgctag acgttatatt atgccgatga
     6721 tggtaacagc ttgggtagtt tatttgtcta tcccgttttc gattcaccct aacttcattt
     6781 tagtccctgc tgcctgttta tttggtttgt ccatctgtat aactgcagcg agcttcaaga
     6841 aattcttgta aagataataa gcctcagtaa tatactgggg ctattcgtct gttatagtgt
     6901 ttgtcccttc attttctgtt tcaatatccc aatcatctcc atcccaatct tcgacttccc
     6961 agtattgtgg atattcatcc tcttcggtct ctcgttcaga gctataccaa agaggcaatt
     7021 ccccatattc atccaattgt gactctatgc gttttctctc gtcatcaccc agaaattgcc
     7081 aataattaca gactaaattt cccctcaaac ttaattccca aagaccaccg taattatatg
     7141 gggcattttc tgcatggcag atatctccca ctttatgtgc ctgcggaaga gggtaagcaa
     7201 ttgatgggag aaatacaggg aatagagcta aatatctcat ctggtatctc atggtaaagc
     7261 gtgaatactc aactttaata ctaacttatt aagtaacact gacacagttg aatatctttc
     7321 taaccattta atattttgtg caatttctct tctgattggt aacagagttt tccattaaat
     7381 tttaggatcg cttttggcac tcttaacttg aagtaaaact aaaaatagag gtgcactatg
     7441 tctatttcaa catctttaag gaaaggtatt gttgttcttg ttaccttatc ttgcttgccg
     7501 gcatttgctt caacagaaca agagcaatta gctcaggcaa ttaagcaact ggaagcggct
     7561 aaattatcac tccaacgagc agaaaaagtg gctaaagcct cgcctaaaac acgagaatac
     7621 ttcaactatt ctgccattca ccgtgatatt gaaaccgtca aaaagggaat tcaacaatat
     7681 atcaacccaa gcagagcatt acctcgtgat ccgaacgtac tacgtacttt aagtgaagat
     7741 tacagcaaac tacgggggca atgatgtcct attcccctgt tgatgcattt tctgcagcga
     7801 gtggtatcga tcctttcaga ttgaaactca tgatagctat tattttcctt tcaatgctgt
     7861 tactagcagt cgcttgggcc ttaaatagtg gctataaggg gttttcattt agagataaaa
     7921 gtcctttttc acttttagtt ttatttctca aaggagtagc actattagtt tgtgttactt
     7981 atttctttat ctattagatt cgaggtctat tatgagccgt attaaatctc ttacgaaaca
     8041 tctgcatagt cgttatttag ctgtaatgct cgtattctgg ggaactatcc aacatgcgtt
     8101 tgcagccggt ccggatgcat ccaaaatccc agacttccaa attccaggcg tggatagtaa
     8161 tactaaagat ccaatggaaa ttctttggat tgtaggtaaa agtatcatta ccttatttgc
     8221 ggtattactt gccgccggtg ccatttttgt tgtcgttaaa gccttgatca gtatctataa
     8281 cgaagcaact tctgaaaacg gcaagaaagg ctggggacac tttattgttg ctttaattat
     8341 cggctttatt gtgattttct tctgcttgtg gttagtcaaa cttgcagtcg gactcttcta
     8401 attaaaatgt ctaggagacc aatatgccag aacaagatac aaccattcct tttttgccta
     8461 ctcgcctcaa tcgagaggct accgtttacg gcggtatgac agtgagcgaa ttcggcatat
     8521 ctgctggatt gggatttatg ttaggtctga ttgttggtct cttcttgtgg atattaactg
     8581 atttttggct tcttattccg gcaatggcaa tgttgctctg tatcgcaacc gttttaattg
     8641 ggaaaggtgt tgtagccgct gttaagcgag gaaagcccga agcctactta aataggttaa
     8701 ttgaaaagaa aatggatgac ctctttaacg gtcataagtt tataagacga gaagggtttt
     8761 ggtctattcg ccgatataaa aggaaataac aaatgagcca gttaaaaagc caattacacg
     8821 aaaaagataa acatatcaaa acgactcgaa tttttgcctt cctgtttttc attattattt
     8881 tggtgctcgc aggcgtgatc tacacattcc caagtcgcct tacgatatac aacccaccag
     8941 atctacgagc agggagccaa cgagcttggt gggaaattcc taaaccaaca atttatgcat
     9001 tttcttatca aattttccag caaatgaatc gttggatgac aaatggcgaa gaggattacg
     9061 agaagaatat taccgccctc aaaccatttt taacaccaca ctgtgaagca tttttacgac
     9121 aagattataa agatcgtctc cgtaacaatg aactacgtag ccgaactcgt atggtatatg
     9181 aaattaccgg tcgaggctac agtgaagata aagtgaccgt atttagcgaa gacaattggg
     9241 ccgtcaatct tgatttaagc gtagatgaac atttccaagg acaaccggta aaacgagtct
     9301 atatacgttt tcctatcagt attgtgagaa tggatatcga ttcagtcaaa aatccttggg
     9361 gattagggtt taactgctat cactccattc caaaactctt agagggcgtt gagccaaaaa
     9421 cagaggagaa aaaataatga aacgtctacc aattttattc gcttctttac taataagctt
     9481 ctctgggagt agctttgctg atgtcttgat gaaatgggaa agaaaaccct tgcctattgc
     9541 attgcaagtg gaaaaagaac gaatcatttt tgtcgataaa aatgtcaaag ttggctatcc
     9601 ggctgaatta gatggcaaat tacgcattca atcaacgggt ggcgcagtgt acttaaaagc
     9661 cctagagaca ttcccttcta cccgtattga atttcgtgat gtttctacag gtgaaatttt
     9721 cctctttgat attgtttctg caaccaaagt agctaatccg gaagaatcaa tacgaatggt
     9781 atttgatagt gcggtagaaa aacaatcttt ttcaacgaat agagatgatg aacctgatct
     9841 atctttgacc ggcacacgac cacaattacc gataccggca gcattaaccc gttatgccgc
     9901 acaatcactt tatgcgccac tgcgtgcagt tgagccttta gaaggagttc gtcgtgtagc
     9961 acatcgactt ccgaaaaaaa ttaccacatt gctccctgcg tattcgatag aggcaacacc
    10021 tttaatcagc tggcaattgg acgaatatgt agtcacggct attcgtctac aaaacaaagg
    10081 taatagtcaa attacactcg atcctcgaga acttcaagga caattttatg ctgcaacttt
    10141 ccagcataat tggcttggag gatatggagg gaatgaagat accacaaccc tgtatttagt
    10201 gacggaaggc tatgctaata atgcgcttat tccggaaact caccctgtta aacccgtcgg
    10261 taagaaagtg aaaaaaacaa caaaagttga aactaaaccg actcaatcgg cgaagtagga
    10321 ggagaagcta tgaaagcgaa taaagccttg tttgtcatat tggggattgt gtttacccta
    10381 gtcggtggga ttgtctatgc cttattttgg cgaagtgata caccccaaga accaacagag
    10441 caggaaattt tagatatttc cattaaagat ttaacaccgg aacaagtcag atcaatgggc
    10501 attcaaggtg atacgccgat tgatactctg cgtactcttg tgacaaccgt taaatccaat
    10561 gagcgtcgta tggatgaatt aatcgatgaa aaccgacaac tcaagcagaa agaagattta
    10621 gtgaatggtc gtatcagtga tgcagtgaat aatgaaactc gcaaactaca agagcagatt
    10681 gcagatttga aaatgcagtt atttgatatg gcaacacatg ttaataacaa atcgacagca
    10741 caagaatcaa ctcctcaagc agaagctcag cctagtatga caacgaataa aggatttggt
    10801 actgccggag ataaattacc tatcggtggt gcttctatgc ctaatgtgga tattggagga
    10861 atgtactggg tagagccaag cgatcaaatt ggattggatg caggtggaaa agctgtatca
    10921 ggtaatacac ttgcaactaa gtttggattc ccgaatgatt ttaaaggtgg acaaactact
    10981 ggaaataccg aaaagaaagg tctgccgttt ttcccggaaa ctgatgtagt gacaggctcg
    11041 caaggaacaa caggaaattc tcgtggtaaa aaccagatta cgccggttta caccgtacca
    11101 agtaattcca cattccttga ttcagttgca atgacagggc ttattgggcg tatcccgatt
    11161 gataataaag tctctgatgc ttatccattt aaagtactga ttggtcgtga gaatctcatt
    11221 gccaatggta ttgaattact tgatgtagaa ggtgcgattg tttcgggtac agctactggc
    11281 gactggactc tatcttgtgt acgaggcgat gtaaaaagta tgacctttgt gttcaatgat
    11341 gggcgtattg tcagcacgac taacaaaggg aatagtgaga atatcggttg gttatctgat
    11401 agttcaggca ttccttgtgt tcccggggag agaaaaacaa atgcaccaga atatttaggc
    11461 acaaatttct tcttagcggc tgccagtgcc gcagcccaag ggttttcaca atcacaaaca
    11521 acgacagtag ttgatggcaa tagtgttgtt ggagctgtta ccggtgatca aggtaagttc
    11581 atcttagggc aagccatcgg cggtggttta aaagaatccg ccgactggtt tagaaagcgt
    11641 tttgctgaaa actttgatgc tgtctatgta ccacctggac atcgtgtcgc tattcatatc
    11701 gagaaagaga ttgagatcga ttacaactcc aaaggacgta aagtgaaata cggaaacaca
    11761 tcaactaata cacaacttga ttaaaaggaa caaacaatga aagctttata ttgcataatg
    11821 atgagtgcct tattgataac aggttgcaca acttcaactg aagaattatt acccgctaac
    11881 ggcagtacga tgcgagatat ttgggataaa ggagcaggta ataacgatct acacttatac
    11941 cgttcacaac aaggacgaac actcgatcct gtcgattata ttcctaacac tgagcaacga
    12001 gcctataccc gtacggcaga aaatgaaatt aataacttgt tccctcgttt acctaatccg
    12061 gatctgatta tgtatgtgta tccacaccaa actcgttccg gagagcctct tagtattcca
    12121 ggatattcta cggtattacc tttctacggg cgagtccaat atgctcaacc gggtgatcga
    12181 acaagagggc tttgatgatg tcttttttaa gtgaggtatt ttcctctttc aaaccgacta
    12241 agacagaggt tatatcaagt gaaccaaatg aaaattcagg tgagtctgac atcattcaaa
    12301 ataaaatgag tgaggtaaat ggcgaggttc aaccattaaa acgcagtgga aaactcaccc
    12361 tgtcacagca tcaccgtcgg ttatactcac aagccccctc ttttattgat catctacctt
    12421 ggggagaata tttgaatcaa cacggtgtga tactcctcga tgatgctcgt agtgtcgggg
    12481 cggtatttga tatcaagccg attggtacag caggacgtag tattgagttt ttaagcagga
    12541 tacgaaatct tgtcaaagat gccttacaag atagctttga tgagctggat ataaatcctt
    12601 acgtcgtgca attttattgc caagatagcg atgatttaca gccttatatt gatcagctac
    12661 ggaattatat ctcgcctatt gcccaaaata gtgcatttag cgaagaatgg ttacgagtac
    12721 aagccaagca tttcaaggat attggtaaac cagaagggct ttttattgat gacagagtga
    12781 caaatacagc ttggtctgga cgtattcgga gtaccaaaat ggtgatttat cgatatgtag
    12841 ataagtccaa tgattccaat gaaaatctta ttattgagca gcttaataat gcttgttccc
    12901 gaatcaatgg ggctctaaca acggctggat tacagttaca gcggctagat ggtgaacaaa
    12961 ttcgccaatg gttattgcgt tggtttaatc ctaatccatc tattaatttt gagggattaa
    13021 gcaacaatga ttgttaccat ctttttggca aacaaacctc aaatgatgat cttccattag
    13081 cttttactga tttcagtgag gatttatttt attcacagcc gagaaatgaa ggtagctatt
    13141 ggtattttga cggacagcca cacgaggttg ttgtcgtcaa taatttaaga aaacaaccag
    13201 aagtgggctt aatgaccggc gagattactc gtgggcgtaa tattaatgcg ttatttgacc
    13261 tattgccaga atcaaccatc atggcaatta ccatcgtcat ccatcctcag gataagttgg
    13321 aagcacattt agaaaaaatc agtagtcgag cagtgggtga gaattttgag tcaaaatacc
    13381 taaaagaaga ctgtcaaact gtacaggctt atcttaaaga gggtcataaa ctctatcaag
    13441 cagctattgc attttacgtt cgaggtaagg acgaaaagga attgcgtact cgatctcgcc
    13501 aactaagaac aattctgctc agtaacaatt tagagccggt aaaggaaaac gcagaaattg
    13561 ctcctcttaa tagttaccta cgttggctac caatgaattt taatccgcag atggatgcca
    13621 aatcccatta ctacacgaag tactattttg tacaacattt ggcaaactta ttgcctatct
    13681 ttggtcgaga tacaggcact ggtaatccgg ggattactta ctttaatcga ggaggagctc
    13741 cgtttaattt cgatccgttt aaccgtaaag acagaaccaa aaacgctcac aaactcttat
    13801 taggaccaac aggctcagga aaatcagcaa cactatgtgg gcaattatgt caggctatgg
    13861 ccgtttatcg tcctcggacg tttgttgtgg aggcaggaaa ttcatttggt ttattagcgg
    13921 actatgcaga acgttttgga ctgaccgtaa atcgcattac gttagcccca aacagtggca
    13981 ttgtcttacc gctcttttca gaagcccatc ggttattgga tatggaatta aatccggaag
    14041 atgtgccgga agacattgag gataacgatg acactgatga tgaaggcgat atgcaacgag
    14101 atttgttggc cgaaatggag ctgacagcac gtttaatgat cactggtggc gaaaagaaag
    14161 aagatgaaaa aatgagccgt gctgacagag cagccattcg acgtgccatt ttaaatgcgg
    14221 ctcgccaaac taaatccgaa ggcagacaaa cgctaactga agatgtgaaa aaggcattgg
    14281 aggctataag ccgtgatgaa aatactcgtg aagaacggcg tactcgtttg gccgaaatgg
    14341 cagaatcatt ggaaatgttc tgtaccggag tcaatggaca atttttcaac cgggaaggcg
    14401 aaatttggcc ggaagcagat ctgacattgg ttgatctagc catgtttgcc cgggaaggtt
    14461 atgaagcaga attggccatt tcctatattt cactcattaa ccatatcaac agtctcggtg
    14521 aaaaatacca gcatagcgac aggatgattc tgaatgtaac cgatgaatca cacattatca
    14581 ctgccaaccc attattagcg aaattcttgg tgaaaggctc aaaaatgtgg cgtaaattag
    14641 ggatttggct gtggcttgcg acacagaata tggatgactt ccccaatgaa gcagcgaaat
    14701 tgctctcaat ggtcgaatgg tgggaactgt tgaatgtgtc tgctagtgaa attgatgaaa
    14761 tcaatcgctt ccggaaactg tccgaagctc agaaaacgat gttgttatct gccaaaaaat
    14821 cagatcgtaa atataccgaa ggtgtggtat tggcaacaaa tatggaagcg ctattccgtg
    14881 ttgtaccacc gagtttattt ttggctttag gaatgaccga gaaacacgaa aaagcagaac
    14941 gtcggcaatt aatgatgcaa catggttatt ctgaattaga tgctgcttta gaagtcgctg
    15001 ctcgtattga taaagcgagg ggaattgcat aatgatgaaa caacactatc gactatttaa
    15061 tgtcggacca caaaaatcct cattagggat tgtatcttcg gcggtagaaa ctcaactgct
    15121 tggattttgt gaacaaattc gccaactcat cggtatcggg aagcagatta ccttattccc
    15181 tcatcgggta gtgcaaaacc actgggctat cgaacttagc ggcgagaaag gctctgttca
    15241 cttattacta aatgtgacgg ggcgttcttt actgcctact tccaattacc gtgaatggcc
    15301 tgctcgttta gtcatcgaaa tagccgatca tgtggatgct tactggtttg caacattcct
    15361 tgctcagcaa ttggatttga aaagtaatct tttcttctta tccacatcaa ttgtggataa
    15421 ctctatgcat aacgaggtaa cggatactaa tgaagcctga tacgacaatg cctaaaatga
    15481 aaaaggtgag agctgtatta aaaacaacct tgattatcat cggtattatc ttactactac
    15541 ttattgttgg ttggctggca atgacctatt tccctaccac aaattttcaa gcgtggttct
    15601 atgaaacccg ttatgcatgg ttgggatggc gatttgtatt atatggggtt atttggttct
    15661 taatggtaaa actcaatcga agaggacaaa tgccattgaa agccagactg atgattttat
    15721 ctgctatccc ccttatagag ggaattaatt tactgtatct actttaagga ggatgagatg
    15781 acctttaccg tagatagcta cttagaatac tttttgacct tactagcttg gatcattaac
    15841 aataatattt ttgctgtact ggttcaaacc ggtctattca tactaccgct gatttttgtt
    15901 ttaatcggca catggatgga agttaaaaag caaggggagg acgaaggtaa taaaggagat
    15961 ttacttatta cttggctcag ccttaaattt tatccggcga tgtttgttgt agtgttagtt
    16021 ttggccccga tgatacctat caaccttaac aatattgagc tgaatgttga acgttccaaa
    16081 gcctgtggct accgtattcc aacctcacca gaggatagtg gttataatca aatgaactct
    16141 gaattgggca accagcaagc gagagtaccg ctttggtggg gattattcca tcaaatcaac
    16201 aaaggagtta cacacgcatt aacagcttca attccgtgta aaccggattt acgtcaagtt
    16261 cgctttgagg tccaacatga aaaaatcaat aatcctgcat tattgactga ggttcgctta
    16321 tttgtacaac aatgttatgt acctgcacgt cagaaaattc aaagcagtca gctctcattg
    16381 actccggcac aggtgcgtga aaccagctgg ttaggtggtc gtattctttt gacaaacagt
    16441 gagctttatc cccgttatcg agctcaacaa cctcatagtc tatttcccta caatgcttcc
    16501 cgggataatg gattgccgaa taatggggaa ggtggttttc caaattgtgc agagtggtgg
    16561 gatacggcga atactggttt aaaagatcgt ttattagctg atgtcaaaca gaacttctct
    16621 gcaaaagtga ttgatttttt tagcagcaaa gaaaatgcgg atgaatccat actccgtact
    16681 gtattacgag cagagaatat ggatatttcg agagggaaag tttatcccgg gtatgggggg
    16741 aatttagatc ctacatttgc aaatgcaacg actcgattaa catcttcagt gggaagctta
    16801 gctgccagct ttgcagcctt tccagcattc gatgcaatgc gacaagcact gccgatggta
    16861 catgctttta tgttgatggc tgtgatcatc attactccgc tggttattgt gatgagtggt
    16921 tattctctca aaacattagt tacattaact tttgtgagtt ttgctttggt atcactgaca
    16981 ttctggtggg aattagcaag atggttagat tcttggctac tatccgctct atatgattcc
    17041 agtgcacata gtcgaataaa tccgtatttc cttgaaaata cgcaagatga ttttatcgtc
    17101 aattttgtga tgggttcgat gttcttggtt ttaccggcga tttggctagg cagtatgtcg
    17161 tgggctggag taaaaatagg agatatagct gccggtttta ctactgattc attagatagt
    17221 aaatccgcag gctctcaagg tggtaattta gttaagaaag gcggtaagga aatatctgca
    17281 gggtttaaca aataaaacaa taaggtagag gttaatctct accttattaa tttctaatca
    17341 tattttctca tctttttaca aaatagccac cctgatagag tccatatcca aaatatccat
    17401 cacgatatcc atcaagctga ttttcgtctt gatcagcaat tacatcccat aaatcttccg
    17461 gcttactatc ctcactatca tcttcaattt cattaaccgt gttttcgacg tggtttggat
    17521 tatatgctac gtcatttgtt gaaatatctt ctactggtgt tccattgaga attcgcagaa
    17581 ccgtgaatcc aactaaaaac aagggaagtc ctgcaaaaat caccgcaaaa acgacagctt
    17641 gttgtagcgg ttttggtaaa aatgcggtac gttgtttgat aaatttaacc ggcttagcga
    17701 gctgctttcc gaaatcgata aatttcatag tatctttcct aagataaaag gttattgttt
    17761 ttggcgacta ctataaatta ctttatcttt attgtctttt acagaataag ataaaacttt
    17821 tcctgttaaa ttatctaatc cttctgcttt ttcaaattgt acatcaacat acaatataac
    17881 agagcgattt atgtttccca aagaattttt acgcttctgt aaaaactctt tagctttatc
    17941 cttgcccata ggtataccgt caataaactc gggattagaa acatacagat taatttttct
    18001 tggcaaattt tcagtatatt gattagaaga aatatacata tgcccattca tcaggggttg
    18061 gtactcaaac ttaccttgtt caaaatcata attcccgaat tctgagttta caggaattgt
    18121 gaaaacaata ggggcttctt cagattttct gtcatccacc agtttttgta gtttcttacc
    18181 agcttgctca attttatcct gaaactcaaa ctcgtcattt tgatatttat gatacgtatt
    18241 tctatcgctg taaagtaacc agtctttaga taacgaacta agctcgatat tctcactaaa
    18301 atgtaatgat tccatcaata tgttttgata gttgaagttt ttagacactg agaatgctga
    18361 agtggatagc agtaatccga agattaagcc ccataatggg aaagcttttt tacacatttt
    18421 tatctcctga cacattagag agtttaaatt atgatagatc cacctgataa taaagagcaa
    18481 gtcttttaaa caaaaatccc ttagattttt taaacctaag ggatttacct accgagcatt
    18541 gtgtttttta acgtgggtca gctctgacac cacaattgtt catctgccga gctttgtctt
    18601 ttttaacttg ggctagctct agcaccacaa aggtattata aagtattcat caaatgaaca
    18661 tcaaacttat aatggatttt tttacgaggg tcacaatcca cagaaccaat acttggttga
    18721 tcattactac ggcgaattgt tgctcccggc tcaataaact cttttgcatt tccatttggt
    18781 tgaacaaatc cgactagata tttcaagcca tcattttcca actctaaggc ataagtagta
    18841 aaacctgagc ctctggcgat aatcgaaccg tcgttggtca ctgccttttt aatcgggttt
    18901 ttgaaagtag ttttgtcata cgaatactcg taatcatttc ctacccgttt aactgtgaga
    18961 ggtttacctt ctgtgctggt aaaagtc
//
LOCUS       DANLRW010000043        18615 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.043, whole genome shotgun sequence.
ACCESSION   DANLRW010000043 DANLRW010000000
VERSION     DANLRW010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18615
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.043"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            89..1507
                     /gene="leuC"
                     /locus_tag="PXA71_001262"
     CDS             89..1507
                     /gene="leuC"
                     /locus_tag="PXA71_001262"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDL5105382.1"
                     /translation="MQQAKTLYQKLFDSHVVYEAEGETPIIYINRHLIHEVTSPQAFD
                     GLRVAGRQVRQVSKTFGTMDHSISTQVRDVQQLEGQAKIQVLELEKNCEETGIPLFDI
                     TKKQQGIVHVMGPEQGLTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTL
                     KQARAKSMKVEVRGKVNPGITAKDIVLAIIGKTTMAGGTGYVVEFCGEAIRDLSMEGR
                     MTVCNMAIEFGAKAGIVAPDETTFAYLKDRPNAPKGQDWEDAIEYWKTLKADEGAVYD
                     AEVILEAKDIAPQVTWGTNPGQVIGIDDVIPNPEDMADPVTRASAEKALAYIGLEAHT
                     DMKDVPVDQVFIGSCTNARIEDLRAAAAVMKGRKKADNVKRILVVPGSGLVKEQAEKE
                     GLDKIFIEAGAEWRNPGCSMCLGMNDDRLGEWERCASTSNRNFEGRQGRNGRTHLVSP
                     AMAAAAAVFGKFMDIRKVSLNA"
     gene            1520..2122
                     /gene="leuD"
                     /locus_tag="PXA71_001263"
     CDS             1520..2122
                     /gene="leuD"
                     /locus_tag="PXA71_001263"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDL5105383.1"
                     /translation="MAGIKQHSGLVVPLDAANVDTDAIIPKQFLQAITRVGFGKHLFH
                     EWRYLDAEETQINPDFVLNFPQYQGATILLARKNLGCGSSREHAPWALADYGFKVMIA
                     PSFADIFYNNSLNNHMLPIKLTEEEVEEIFQWVWANEGKQIHVDLEAMTVTVGEKVYT
                     FELDEFRRHCLLNGLDNIGLTLQHEAAIAAYEKNIPAFLR"
     gene            complement(2194..2658)
                     /locus_tag="PXA71_001264"
     CDS             complement(2194..2658)
                     /locus_tag="PXA71_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105384.1"
                     /translation="MNKFKIALMATVAIGLFACTPSPQSNSTKQQAQVGYLKQNISQA
                     ELNNPKDFKRYSYYCKNFATGSSSYLATYFPLWSESRKQENFGIYFQLDGGKVYPFDH
                     LANISLNARATKFEVRYRSYQPIEGSFVELVAREFTSTYYKNNVPWLECREG"
     gene            complement(2682..3188)
                     /locus_tag="PXA71_001265"
     CDS             complement(2682..3188)
                     /locus_tag="PXA71_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105385.1"
                     /translation="MADPHIQSPMDFWDYLTVIIYRSGFVLATLMLLLLPYYPQTAQY
                     GLLVSGTMLASSLHLYAKSFRLIFQFSVWIGLLGAVFNFPLLAFGAMLLVIGGLSYKE
                     YFCFRVFGLNFQPLLVAVLWIAFALEWSLLVQILSLVCGLLLLVLSIQKWRMPLHFDI
                     GDKSKYQI"
     gene            complement(3211..4188)
                     /gene="dusA"
                     /locus_tag="PXA71_001266"
     CDS             complement(3211..4188)
                     /gene="dusA"
                     /locus_tag="PXA71_001266"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HDL5105386.1"
                     /translation="MTNEIQPFYRGRFSVAPMLDWTTRHCRYFHRQFSRQALLYTEMI
                     TAPAIIHAKYDLLEYDPSENPVALQLGGSDPAQLAHCAKLVAERGYAEINLNVGCPSD
                     RVQNGMFGACLMAKADLVADCIKAMQDAVEIPVTVKHRIGIDDLDSYEFLCDFIEKVQ
                     PYSNDFIVHARKAWLTGLSPKENREIPPLDYDRVYQLKRDFPHLKISINGGIKTIEEI
                     KQHLQFVDGVMVGREAYQNPSMLGEIDSQIFNENRPLVTAKEAVEKMFPYIERELAKG
                     VYLNHIVRHMLGAFQHCKGARQWRRHLSENATKSGAGVEVVEQALAFIG"
     gene            4539..5516
                     /locus_tag="PXA71_001267"
     CDS             4539..5516
                     /locus_tag="PXA71_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL5105387.1"
                     /translation="MSRNLFQKRLNIKPYEYPELLEFKDAIRHSYWLHTEFNFTGDIQ
                     DYRTTINDHERHVLTRAMLAISQVEVNVKRFWGELYCYFPKPEMDDVGGTFAESEVRH
                     KDAYSFLLEKLGLNEMFSQIHEIEPLMNRIRYMESFMKDKDAGKGEFVLSLVLFSLFV
                     EHISLFGQFIIMMSFNKHKNLFKGISNAVEATSKEEEIHGKFGIALYEILRDEHSELF
                     TPEFFEDLQTLANQAFEAERGILDWIFEEGDLSFITKATVENYIKNRYNNSLSILGLE
                     PPHDIDPELLKETEWFDIEILSTKETDFFNKRSTDYSKKMKQITADDLF"
     gene            5503..7170
                     /locus_tag="PXA71_001268"
     CDS             5503..7170
                     /locus_tag="PXA71_001268"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL5105388.1"
                     /translation="MTYFNTDRPDFHWLNEDSRLFLQRGYLLEGTTALDRIRFIAEHA
                     ERKLGIEGYADKFYHYMARGYFSLSSPIWSNFGLDRGLPISCFGSYIGDSIHEIMVTT
                     AEVGMMSKIGGGTSAYFGDIRPRGSLIKNNGKSDGSFNFSKLFDTVIDVISQGTSRKG
                     QFAGYIDIEHGDIDEWLDIHTEGNPIQLMYYGVCVGHDWLESMKAGDPYKRQLWAKLL
                     QRKTETGIPYLFFKDNANAGRPDVYKDKNMTIHASNLCTEIMLPSSNEESFVCCLSSM
                     NLLYFDEWKDTDAPETLTYFLDVVMSEFIEKSQSIPFLDRANRFARRHRALGLGVLGW
                     HSYLQANNIAFDSFQAMQKNNEIFKTLQAKTLKASQELAQRFGEPEILEGYGRRNTTL
                     MSIAPTKSSSFILGSVSPSVEPFKSNYYVKDLAKIKTVYKNPFLEKLLQEKGLDTEEI
                     WTSILQNDGSVQHLEQLSEHEKEVFKTFAEISQLSVIQQAAQRQKYIDQGQSINVMIH
                     PATPARDLNQLYLTAEELGLKSIYYQNSMSAAQVFNRNLLSCSSCEG"
     gene            7174..7593
                     /locus_tag="PXA71_001269"
     CDS             7174..7593
                     /locus_tag="PXA71_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105389.1"
                     /translation="MGNLSHTSPNTIVEVVGEFPEITSSGYTFDKGPIQLRIGKHTAP
                     NKGFGVKHIEAEHMQEILNLGFTSVNEFVKAIIVENAKIFCEFSDLKGNHRPIILKAS
                     IGIVVLERKFLESGTIYSVVTAYRRTNPHGIQIGTMK"
     gene            complement(7828..8589)
                     /gene="nudC"
                     /locus_tag="PXA71_001270"
     CDS             complement(7828..8589)
                     /gene="nudC"
                     /locus_tag="PXA71_001270"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HDL5105390.1"
                     /translation="MNKGYWIIVSDFDIALEAGEIPFGSAEELGLSGREKLTIGQYQG
                     SPAYLVKALESDNQREFAYLRSQINRPPELSHLLHRAVSLNHFFQTHQFCGKCGEKTI
                     LASDEIAIYCNACGNRAYPTISPSIIVAVRKGRQILLANHLRHKGTIYTTLAGFVEAG
                     EAVETAVHREVFEETGIKVKNVRYFGSQPWAFPNSLMLGFLADYESGEIQLQEEEICD
                     AKWFDCEESLPEIPQQGTIAFELIQATLKLCRESK"
     gene            complement(8582..9265)
                     /locus_tag="PXA71_001271"
     CDS             complement(8582..9265)
                     /locus_tag="PXA71_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HDL5105391.1"
                     /translation="MKQPTFKRMTNKRSNFAKNLQKNPQKRPLTFAETTLVLLNKPYD
                     VLTQFTDEQGRKTLKDFITMPNIYPVGRLDRDSEGLLLLTNNGEIQHRLAHPKFDKQK
                     TYWVQVEGVPQPEDLAKLAKGVELKDGLTKPAKVRAIATPDFAWNIAPQIRERKTIPT
                     SWIELIISEGKNRQVRRMTAHIGFPTLRLIRVGIGQFRLGNLGCGEFQVLSENEKRKL
                     FTQLGLKDE"
     gene            complement(9262..10110)
                     /locus_tag="PXA71_001272"
     CDS             complement(9262..10110)
                     /locus_tag="PXA71_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5105392.1"
                     /translation="MEKRTLALLKVHGTAVLFGASGIFGALIQSSAETIVLGRVMIAF
                     AIISLYFLWKKQPLVKLNLQQMAQLAFSAALLAAHWVTFFVAVKVGGVAVATLGFASF
                     PAFVALFESLFFREKLRFREVVLLIAITVGLILVTPEFTFGNQATQGLLWGVLSALVY
                     GILAVANRRTMSKISGVQASWWQYIFATLFLLPLSITEFPSVSTQDWFWIFCIGFLCT
                     TLAYTLFISSLDTINARTASMIISLEPVYAIVIAWLCFNEVPTLKMIIGGLIILLSVA
                     WANLKK"
     gene            complement(10110..10595)
                     /locus_tag="PXA71_001273"
     CDS             complement(10110..10595)
                     /locus_tag="PXA71_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HDL5105393.1"
                     /translation="MPILAILFGIFFYIYCEISLLVNIGSIIGVLPTILLLVVISFLG
                     LWIVKLRGVYTLFSIKQDLSQGKIPTEAVGNSVMFIVAGILLIIPGFLSDILAILCVL
                     PFSRKWIQAFVINSVKNKVFMHFTAQTSSFSVTSAQDSNTFDAEFERKPDEQDQHNRI
                     K"
     gene            complement(10597..11919)
                     /gene="pepQ"
                     /locus_tag="PXA71_001274"
     CDS             complement(10597..11919)
                     /gene="pepQ"
                     /locus_tag="PXA71_001274"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HDL5105394.1"
                     /translation="MKNLFSTHLARLQQTVQSLLENAFLDGLWIYAGKAKTLFLDDQT
                     APFKINPYFNYFFPYPQAENCWLFLDGKNKPKIYFYAPEDYWVSTLKVPTEAFFAAEF
                     EWVLLRAENEIATFIQNPTACAFIGEDVELAKKLGFSHINPQKVLNSLNFARSIKTEF
                     EIESIYQAQFSALKGHQVAKEAFFAGKSEFEINLEYLKATQQSDLNVPYGNIVAINQN
                     GAVLHYTALDFDTHAKRHSFLIDAGTTVNGYASDLTRTYAFDSGSEFAELVAKMEQLK
                     LQIIAELSIGVNYLHYHTRMQQMISQLLAEHQFIHLSAEQIFEQGISRTFFPHGLGHL
                     LGIQVHDVGGFQQNARGSHKAPPEVYPSLRCTRELQENMVLTIEPGFYFIEMLLKPWK
                     NSALSSAFNWQKIEAFKAFGGIRTEDNIVMRANGAENLTANAAATLGG"
     gene            11930..12172
                     /gene="tusA"
                     /locus_tag="PXA71_001275"
     CDS             11930..12172
                     /gene="tusA"
                     /locus_tag="PXA71_001275"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HDL5105395.1"
                     /translation="MTQLTVNKELDTLGLRCPEPVMLTRKTIRNMEEGEILHIIADDP
                     ATTRDIPSFCEFMDHQLIQKEVDSTPYHYWIKKGLE"
     gene            complement(12239..12670)
                     /gene="rraB"
                     /locus_tag="PXA71_001276"
     CDS             complement(12239..12670)
                     /gene="rraB"
                     /locus_tag="PXA71_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HDL5105396.1"
                     /translation="MYNLDELRTETDETISSLLADGSDPEALYIIEHHVAHHDFDKLE
                     KLVVDAYKLGYEISEAEEVEDENGKVIFVCDIVSEIHLNADLITAQQKELLPLIEKAG
                     AEYEGWGTYFEDPNADEDEYGDDGEFFDDENDDFEDEPRRH"
     gene            complement(12685..13296)
                     /locus_tag="PXA71_001277"
     CDS             complement(12685..13296)
                     /locus_tag="PXA71_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDL5105397.1"
                     /translation="MKLNYHKTHFLTSAPDIRHLPEDTGVEIAFAGRSNAGKSTALNA
                     LTNQKSLARTSKTPGRTQLINLFKVETNCKLVDLPGYGYAAVPEQMKIQWQKALGEYL
                     QKRECLGGVVILMDIRHPLKDLDQQMIEWAVSANLPVLLLLTKADKLSQSARSKQVKM
                     VREAILPFQGDIQVEAYSALNKIGIDKLSNKLDSWFAPKLITE"
     gene            complement(13298..13714)
                     /locus_tag="PXA71_001278"
     CDS             complement(13298..13714)
                     /locus_tag="PXA71_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HDL5105398.1"
                     /translation="MSWYKALFSFNGRLNRRGFWIGFGIHFLFLFMVAMWINLAELSL
                     LSVLPLIITGFSLSAIIIKRLHDRNRSAKALLMALVPIICYLAAPYSQGIMQILLGQV
                     MPAFIGMLLFLEWGVFAGNPEPNQYGEQGLSFKFRE"
     gene            complement(13718..14548)
                     /locus_tag="PXA71_001279"
     CDS             complement(13718..14548)
                     /locus_tag="PXA71_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HDL5105399.1"
                     /translation="MFEYFLSLSPIWQAFLAGLFTWGCTIFGSSFVYFFKSVNRKLLD
                     SMMGFAAGVMIAASFWSLLAPSLEYAEADYGSLAWLPAAIGFLAGGAFIRLIDYVVPH
                     LHLSKPIEQAEGNDQLKQGLSKSTLLFLAITIHNIPEGLAIGVAFGALATQVSGVDAS
                     IMGAIGLAIGIGLQNIPEGSSLVLPIRGEGHSRKKAFWYGSMSAVVEPIAAVIGAVFV
                     LSMTAILPYALAFAAGAMIFVVVEELIPESQSSGNTDIATLSLMLGFVVMMVLDVALG
                     "
     gene            complement(14885..15000)
                     /gene="rrf"
                     /locus_tag="PXA71_001280"
     rRNA            complement(14885..15000)
                     /gene="rrf"
                     /locus_tag="PXA71_001280"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(15162..18060)
                     /locus_tag="PXA71_001281"
     rRNA            complement(15162..18060)
                     /locus_tag="PXA71_001281"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(18377..18452)
                     /locus_tag="PXA71_001282"
     tRNA            complement(18377..18452)
                     /locus_tag="PXA71_001282"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18417..18419),aa:Ala,seq:tgc)
     gene            complement(18509..18585)
                     /locus_tag="PXA71_001283"
     tRNA            complement(18509..18585)
                     /locus_tag="PXA71_001283"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18549..18551),aa:Ile,seq:gat)
BASE COUNT         5479 a         4298 c         3617 g         5221 t
ORIGIN      
        1 tccatatcag caagcggtca tttttgcaaa attttttgca aatttaaccg cttgtattaa
       61 aagttaccct tttgagttgg aacattttat gcaacaagcc aaaaccctat atcaaaaact
      121 attcgactca cacgttgtgt atgaagccga aggcgaaacg ccgattattt atattaaccg
      181 ccacttaatt cacgaagtta ccagcccgca agcgtttgac ggcttgcgtg ttgccggtcg
      241 ccaagttcgc caagtcagta aaaccttcgg cacaatggac cacagtattt caacccaagt
      301 gcgtgatgta cagcaacttg aagggcaagc gaaaattcaa gtattagaat tagaaaaaaa
      361 ctgcgaagaa accggtatcc cactgtttga catcactaaa aaacaacaag gtatcgttca
      421 cgtaatgggg ccggagcaag gcttaacttt acccggtatg accattgtat gtggtgactc
      481 gcacaccgcc actcacgggg cctttggtgc gttagccttc ggtatcggta cttccgaagt
      541 ggaacacgtt ttagccaccc aaaccttaaa acaggcccgt gcaaaaagta tgaaagtgga
      601 agtccgtggc aaagtaaacc cgggcattac cgcaaaagat attgtgcttg cgatcatcgg
      661 taaaacaact atggctggcg gtacaggcta tgtagtggaa ttttgtggcg aagcaattcg
      721 tgatctttca atggaagggc gaatgacagt gtgtaatatg gcgattgagt ttggtgcgaa
      781 agccggtatt gttgccccgg atgaaaccac gttcgcttac ttgaaagacc gcccaaatgc
      841 accaaaaggt caagattggg aagatgccat tgaatattgg aaaaccctca aagccgatga
      901 gggtgcagtt tacgatgcgg aagtgatctt agaagcaaaa gacattgctc cacaagtgac
      961 ttggggaacc aacccggggc aggtgatcgg tattgatgat gtaattccaa atccggaaga
     1021 tatggccgat cctgttactc gtgcctctgc ggaaaaagcc ttagcttaca tcggcttaga
     1081 agcccataca gatatgaaag atgtaccggt tgatcaagtc tttattggtt cttgtactaa
     1141 tgctcgtatt gaagatttgc gtgctgcggc agcagtaatg aaagggcgta aaaaagccga
     1201 caatgtaaaa cgtattctcg ttgtgccagg ttcaggtttg gtaaaagagc aagcagaaaa
     1261 agagggcttg gataaaatct tcattgaagc cggtgcagaa tggcgtaacc cgggttgctc
     1321 aatgtgtttg ggaatgaacg atgaccgctt gggcgaatgg gaacgttgtg cctctacgtc
     1381 taaccgtaac tttgagggca gacaaggacg taacggtcgt acccacttag tcagcccggc
     1441 aatggcggct gcggcggcgg tgttcggtaa atttatggat attcgcaaag tgtcattaaa
     1501 cgcataatag gaggaaaaaa tggcaggtat taaacaacat tcaggcttgg tcgttcctct
     1561 tgatgcagcg aacgtagaca ccgatgcaat cattccaaaa caatttttgc aagccattac
     1621 tcgagtcggc tttggtaagc accttttcca cgaatggcgt tatttagatg cggaagagac
     1681 tcaaatcaac cccgatttcg tactgaactt cccacaatat caaggtgcaa ccattttact
     1741 cgcccgtaaa aatttaggct gtggctcttc tcgtgagcac gccccttggg cattggcaga
     1801 ttacggtttt aaagtaatga tcgccccaag ttttgcggat attttctaca ataacagctt
     1861 aaataaccat atgttgccga ttaaattaac cgaagaggaa gtcgaagaga tcttccaatg
     1921 ggtgtgggca aatgaaggaa aacagatcca cgttgattta gaagcgatga ctgtgactgt
     1981 tggcgagaaa gtttatacct ttgagttaga cgaattccgc cgccactgct tattaaacgg
     2041 tttggataat atcggcttaa ccctacaaca cgaagctgcg attgctgctt atgagaaaaa
     2101 cattccggca tttttacgct aattaaaata caaaaaaacg gctaacatct ttaaggcgtt
     2161 agtcgttttc tttttagcca ttttctttgg caattagcct tctcggcact ctaaccaagg
     2221 cacattattt ttgtaataag ttgaagtaaa ctctcgtgcc actaactcta caaaactgcc
     2281 ttcaatcggc tgataagaac gataacgcac ttcaaatttt gttgctcttg cattcaaact
     2341 gatgttggca agatggtcga acggataaac ctttccgcca tcaagttgaa aatagatacc
     2401 aaaattctct tgcttacggc tttcagacca aagtggaaaa taggttgcca aatatgaact
     2461 gctgcctgtt gcaaaattct tacaataata gctataacgc ttaaaatctt tcggattatt
     2521 caattccgct tggctgatat tctgtttcaa atatccaacc tgtgcttgtt gcttagttga
     2581 gtttgattgt ggtgagggcg tacaagcaaa taagccaatt gccactgttg ccattaaagc
     2641 aattttgaat ttattcataa aaatcccgat aaaatattaa attaaatctg atatttgctt
     2701 ttatcgccaa tatcaaaatg cagcggcatt cgccattttt gaatactcag cacaagaagc
     2761 aacaagccac agacaaggct taaaatttgc accaataaag accattctag tgcaaaagca
     2821 atccacaata ccgccactaa aagcggttgg aaatttaagc cgaatactct aaaacagaaa
     2881 tattctttat agcttaatcc gccgatcacc agtagcattg ccccgaacgc aagcaaaggg
     2941 aaattaaaca cagcaccaag taagccaatc caaacagaaa attggaaaat caggcgaaac
     3001 gatttggcat aaagatgcaa agaagatgcc aacattgtgc cagatactaa taaaccatat
     3061 tgtgccgttt gcggataata aggcaataaa agcaacatca atgtagctaa cacaaaaccg
     3121 ctgcggtaaa tgatgacggt taaataatcc caaaaatcca ttggcgattg aatatgtgga
     3181 tctgccataa ctgcctcctt aaacaataaa ttagccaata aacgcaaggg cttgttccac
     3241 tacttctaca ccggctcccg acttagtggc attttcactt aaatgacgac gccactgcct
     3301 cgctcctttg caatgttgaa acgcaccaag catatggcga acgatatgat ttaaatagac
     3361 acctttggca agctcacgtt caatataagg gaacatcttt tccaccgctt cttttgccgt
     3421 tacaagcggt cgattttcat taaaaatttg cgaatcgatc tcgcctagca ttgacgggtt
     3481 ttgataggcc tcacgcccta ccattacccc atcaacaaac tgcaaatgct gtttaatttc
     3541 ctcaatggtt ttaatgccgc cattgatgct aatctttaaa tgcggaaaat ctcgcttgag
     3601 ctgataaacc cgatcataat ctaaaggcgg aatttcacgg ttttccttcg ggcttaaccc
     3661 tgtcagccac gccttgcggg cgtgtacgat aaaatcattg ctataaggtt gcactttttc
     3721 gataaaatca cacaaaaatt catagctgtc taaatcatca atcccaatac gatgtttaac
     3781 cgtgaccgga atttccaccg catcttgcat tgctttaata caatccgcca ctaaatctgc
     3841 ttttgccatc aaacaagccc caaacatacc gttttgcact cggtctgacg ggcaaccgac
     3901 atttagatta atctcggcat agcctcgctc tgccaccaat ttggcacaat gagccaactg
     3961 tgccgggtcg cttccaccca gttgcaaagc caccggattc tcgctcggat catattccaa
     4021 caaatcatat ttggcgtgaa taatcgccgg ggcggtgatc atttcggtat aaagcaaggc
     4081 ttgacgacta aattggcgat gaaaatagcg gcagtgacgg gttgtccaat ctaacattgg
     4141 agcaaccgaa aaacgtccac ggtaaaaagg ttgaatttcg ttagtcataa aaatatcaaa
     4201 ataaagcggt aaaaaatcag taaaaaataa ccgcttgtaa gcgattcaaa acaagcagcc
     4261 atcatactcg aaaaagccag ataaacatag tttcctcaag gcttccccat ctatctgcgc
     4321 acttttaaaa caaccttaaa acacaatata tagtgtttca acatcaaatc acacacaaca
     4381 tattgaagca aaaatttaca aaattatttt tctttataaa tcaataagct accaaagacc
     4441 aataaaaaag agtgtttgtc aagacttgtc ttgaaacttt ttttgcatac aatcatctac
     4501 cagttccaaa cataaacttt aagatagagc ctacgaatat gtctagaaac ctcttccaaa
     4561 aacgcttaaa tattaagccg tatgagtatc ctgagcttct tgaatttaaa gatgcaattc
     4621 gccattctta ctggttacac accgaattta acttcaccgg cgatattcaa gactatcgca
     4681 ccaccattaa cgatcacgaa cgtcacgtgt taacccgagc aatgcttgcg atttcacaag
     4741 tagaagtgaa tgtaaaacgt ttctggggcg agctatactg ctatttccca aaaccggaga
     4801 tggacgatgt aggcggtact tttgctgaaa gtgaagttcg ccataaagat gcttactcgt
     4861 tcctattgga aaaattaggc ctaaatgaaa tgttcagtca aattcatgaa attgaaccat
     4921 taatgaaccg cattcgttat atggaaagtt ttatgaaaga taaagatgct ggcaaaggcg
     4981 aatttgtttt atcgttagtg ctgttctctt tatttgttga gcatatttca ttgtttggac
     5041 agtttattat catgatgtcg ttcaacaagc ataaaaacct gtttaaaggg atttccaatg
     5101 cggttgaagc cacctcaaaa gaggaagaaa ttcacggtaa attcggaatt gcgttatacg
     5161 aaattttacg tgacgaacac agtgaactat tcacaccaga attttttgaa gatttgcaaa
     5221 ccttggcaaa tcaagcgttt gaagcagaac gtggcatctt agactggatt ttcgaagaag
     5281 gtgatttaag ctttatcacc aaagcgacgg tagaaaatta cattaaaaac cgttacaaca
     5341 attctttaag cattttaggg ttagagccgc cacacgacat cgaccctgaa ttattaaaag
     5401 agactgagtg gtttgatatt gaaattcttt caaccaaaga aaccgatttc tttaacaaac
     5461 gtagcaccga ttattctaaa aaaatgaaac agattaccgc agatgactta ttttaataca
     5521 gaccgcccgg acttccactg gcttaatgaa gacagccgtt tattcttaca acgtggctat
     5581 ttattggaag gaacaaccgc attagaccgc attcgtttta ttgccgaaca cgcagagcga
     5641 aaactcggca ttgaaggcta tgccgataaa ttctatcact atatggcaag aggctacttc
     5701 tcgctttctt cgccaatttg gtcaaacttt ggcttagatc gtggcttacc gatttcttgt
     5761 ttcggtagct acatcggcga ctctatccat gaaattatgg tgactaccgc tgaagtgggc
     5821 atgatgagta aaattggcgg tggtacttcg gcctactttg gcgatattcg tccgcgtggc
     5881 tcgttaatta aaaacaacgg taaatcagac ggctcattta acttcagtaa attatttgac
     5941 actgtgattg acgtgatttc acaaggaaca tcacgcaaag gtcagtttgc cggttatatt
     6001 gatattgagc acggcgatat tgacgaatgg ctggatattc acaccgaagg caacccaatt
     6061 caattaatgt attacggtgt gtgtgtcggt cacgattggt tagagtcaat gaaagccggc
     6121 gatccataca aacgtcagct ttgggcaaaa ttgttacaac gtaaaaccga aaccggtatc
     6181 ccttatttat tctttaaaga caatgccaac gcaggtcgtc ctgatgtata taaagataaa
     6241 aatatgacga ttcacgcctc taacttatgt actgaaatta tgttgccttc cagcaacgaa
     6301 gaaagtttcg tatgctgttt atcgtctatg aacctactct actttgatga gtggaaagat
     6361 accgatgcac cagaaacatt aacctatttc ctcgatgttg taatgagtga atttattgag
     6421 aaaagtcaat caattccatt cttagaccgt gcaaaccgct ttgcccgtcg ccatcgtgca
     6481 ttaggtttag gcgtgttggg ctggcacagc tatctacagg caaataatat tgcctttgac
     6541 agcttccaag cgatgcaaaa aaacaacgag attttcaaaa cgcttcaagc aaaaaccttg
     6601 aaagcctcgc aagaattggc tcaacgcttc ggcgagccgg aaattttaga gggctatggt
     6661 cgccgtaata ctacattaat gagtattgct ccgactaaat ccagtagctt tattttaggc
     6721 agtgtgtcgc catcggtaga gccgtttaaa tccaactact atgtaaaaga tttagcgaag
     6781 atcaaaaccg tgtataaaaa cccgttctta gagaaattac tccaagaaaa agggctagac
     6841 accgaagaaa tttggacgtc tattttacaa aatgatggct cggttcagca tttggaacag
     6901 ctttccgagc acgaaaaaga agtatttaaa acctttgccg aaatcagcca attaagcgtg
     6961 attcagcaag ctgctcaacg tcaaaaatat attgaccaag ggcaaagtat taatgtgatg
     7021 atccacccag ccacaccggc tcgtgatctt aaccaattat acttaacagc agaagagctg
     7081 ggcttaaaat ccatctacta ccaaaactca atgagtgcag cacaggtatt taaccgtaac
     7141 ctattaagct gctcaagttg cgaagggtaa ataatgggaa atttatcgca tacttcacct
     7201 aatactattg ttgaagttgt tggtgaattt cctgaaataa catctagtgg gtataccttt
     7261 gataaaggtc ctattcaatt aagaatcggc aaacatactg ctccaaataa aggctttggt
     7321 gtaaagcata ttgaagccga gcatatgcaa gaaattctta atctaggatt tacatcagtt
     7381 aatgaatttg tcaaagctat catagtagaa aacgctaaaa ttttttgcga attctcagat
     7441 ttaaaaggca atcatcgccc tattattctg aaagcaagta ttggcattgt ggttctagag
     7501 cgtaagtttt tggaaagcgg tacgatatat tcagttgtaa ccgcttatag aagaacaaat
     7561 cctcacggaa tacaaatagg cactatgaaa taaagtacgt tagtgttata atcagttcca
     7621 cgcaagagca tttgtagaaa ataacaggcg gatttggttt tctactgtgg gcggcaggtt
     7681 tccgctaacc tgtaatagct atttaatttt tatattaaat cctgaacttg aaacagacta
     7741 agggattgct gcggtagcta agaatacaaa cctctctata atcatataga gaggtttttt
     7801 cttattgatg agcacaagtt aagataatta tttactctcc cgacataact tcaaggtagc
     7861 ttgaatcagc tcaaaagcta ttgtgccttg ttgtgggatt tcaggtaagc tttcctcaca
     7921 gtcgaaccat tttgcatcgc agatttcttc ttcctgtagc tgaatttcac cgctttcata
     7981 atccgctaaa aaacctagca ttaatgaatt gggaaacgcc caaggttggc ttccaaaata
     8041 acgcacattt ttcactttaa tgcccgtttc ttcaaacact tcacgatgca ccgcagtttc
     8101 taccgcctca ccggcttcga caaaaccggc taaagtggta taaattgtgc ctttatggcg
     8161 tagatgattg gctagtagga tttgtctgcc ttttcgcacc gccacaataa ttgacgggct
     8221 aatcgttggg taagctcgat tgccacacgc attgcagtaa attgcaattt catcgcttgc
     8281 cagtatggtt ttctcgccac attttccgca aaattggtga gtctgaaaga aatggttaag
     8341 cgaaacagct cgatgcaaca aatgagacag ttcgggtggt cggttaattt ggcttcttaa
     8401 ataagcaaac tctcgctgat tatccgattc taacgccttc accaaataag ccggcgagcc
     8461 ttgatattgc ccgatggtta atttctcacg tccacttaag cccagctctt ccgcacttcc
     8521 gaatggaatt tccccagcct ccaaggcaat atcaaaatcg ctgacgataa tccaatatcc
     8581 tttattcatc tttcaatcct aattgtgtaa acaacttacg tttttcattt tcagatagca
     8641 cttgaaactc accacagcct aaattgccta atctaaactg gcctatccca acacgaatta
     8701 accgtaaagt cgggaaaccg atatgtgcag tcattcttct gacttggcga tttttccctt
     8761 cagaaataat caattctatc cagctggtcg gaatggtttt ccgctcacga atttgcgggg
     8821 cgatattcca agcaaaatcg ggcgttgcta ttgctctgac tttcgcgggc ttggtcaaac
     8881 catcttttaa ctccacccct tttgctaatt tggcaagatc ttccggttgt ggaacaccct
     8941 ccacttgtac ccaataggtt ttctgcttgt caaatttcgg gtgagctaaa cggtgctgga
     9001 tttcgccatt attagtcaaa agcaacaatc cttcactgtc tctatctagc cgcccgaccg
     9061 ggtaaatatt gggcatcgta ataaaatctt ttagcgtttt tcgcccctgt tcatcggtaa
     9121 attgggttag tacatcataa ggcttattga gtaacacaag ggtggtttcc gcaaaggtaa
     9181 gcggtcgttt ttgcggattt ttttgcaaat ttttagcgaa atttgaccgc ttgtttgtca
     9241 ttcttttaaa ggttggttgt ttcatttttt caggttcgcc cacgcaacag aaagtaaaat
     9301 aattaagcca ccgataatca ttttaagggt tggcacttca ttaaagcaaa gccacgcgat
     9361 cacaatcgca tacaccggct cgagggaaat aatcattgag gcagtacggg cgttgatggt
     9421 atcaaggctt gaaataaaca gcgtataggc aagggttgta cataaaaaac cgatacagaa
     9481 aatccaaaac caatcttggg tggaaacgct tggaaattca gtgatggaga gaggcaacag
     9541 aaaaagtgta gcaaaaatat actgccacca gcttgcttgc acaccggaaa ttttgctcat
     9601 ggtacggcga ttcgctaccg ccaaaatacc atacaccaaa gcagataaca cgccccacaa
     9661 taaaccttga gtggcttgat taccaaaagt aaattcaggg gtaactaaaa ttaaaccaac
     9721 cgtgatggca attaatagca ccacttcacg aaagcgtaat ttttcacgga agaacaggct
     9781 ttcaaataac gccacaaatg ccggaaagct ggcaaagcct aaggttgcta ccgccacacc
     9841 acctacttta accgccacaa aaaaagtaac ccagtgggca gctaataaag ctgcagaaaa
     9901 tgcaagttga gccatttgct gtaagttgag ctttacaagc ggttgttttt tccataaaaa
     9961 atacaaagag atgatagcaa aagcaatcat cactcgccca agcacaatgg tttcagccga
    10021 gctttgaatt aatgctccga agatccccga ggcaccaaat aaaaccgctg tgccgtgtac
    10081 tttaagtagt gcaagtgttc ttttctccac tatttgatcc tattatgttg atcttgctcg
    10141 tccggcttgc gttcaaattc tgcatcaaac gtgttgctat cttgcgcaga tgtaacagaa
    10201 aaagacgaag tttgggcggt aaaatgcata aacaccttat tctttacgct attaattacg
    10261 aaggcttgaa tccattttcg gctaaagggt aacacgcata aaatcgctaa aatatcactt
    10321 aaaaagccgg gaataatcag caaaatgccg gctacaataa acatcaccga gttgccgact
    10381 gcttcagtcg gtatcttgcc ttggcttaaa tcttgcttga tggaaaagag ggtataaacg
    10441 ccccttaact tcacaatcca taaccctaaa aatgaaatca cgaccagtaa caaaatcgtg
    10501 ggtaacacgc caatgatcga gccaatattc accagcagcg aaatttcgca atagatataa
    10561 aagaaaatac caaacagaat cgctaaaata ggcatattat cctcccaacg ttgcggcagc
    10621 gtttgccgtc agattttctg ccccattggc tcgcatgaca atattgtctt cggtacgaat
    10681 cccgccaaag gctttgaaag cctcaatttt ctgccagtta aaggcagaag ataaggcact
    10741 gtttttccaa ggcttaagta gcatctcaat aaaataaaaa cccggctcaa tggtaagcac
    10801 catattttcc tgtagctcac gggtacaacg caaacttggg taaacctctg gaggagcttt
    10861 atggctgcct cgggcatttt gctgaaaacc gcccacatcg tgcacttgaa tacccaataa
    10921 atgccctagt ccgtgtggga agaacgtacg gctaatccct tgttcaaaaa tttgctcggc
    10981 tgaaagatga ataaattgat gttccgctaa taattgcgaa atcatctgct gcattcgggt
    11041 gtgataatgc aggtagttca ccccaatact cagctcagca ataatctgca acttcaactg
    11101 ttccattttc gccaccagct cggcaaattc agaaccgctg tcaaaggcat aggtgcgggt
    11161 gagatcggag gcataaccat ttaccgttgt gccggcatca attaaaaaac tgtggcgttt
    11221 tgcgtgggtg tcaaaatcta acgccgtata atgtagcacc gcaccatttt gattaatcgc
    11281 cacaatattg ccataaggaa cattgagatc agattgctgc gtcgctttca aatattcaag
    11341 gttgatttca aattcgcttt tgccggcaaa aaatgcctct tttgctactt gatgcccttt
    11401 taaggctgaa aattgggctt ggtaaatact ttcaatttca aactccgttt tgatggagcg
    11461 ggcaaaattc aggctattca gcactttctg cggattaata tggctaaagc ctaacttttt
    11521 ggctagctca acatcttcac cgataaaggc acaagcggtc ggattttgga taaaggttgc
    11581 aatttcattc tctgctctca acaaaaccca ctcaaattcc gcagcgaaaa aggcctccgt
    11641 tggcactttt agagtggaaa cccaataatc ttcaggggca taaaaataga ttttcggctt
    11701 atttttgcca tctaaaaata accagcaatt ttcagcttgg ggatatggga aaaagtaatt
    11761 aaaataaggg ttaattttaa acggggcggt ttgatcgtct aaaaataagg tttttgcctt
    11821 gccggcataa atccataaac cgtctaaaaa ggcattttcc agcaagcttt gcactgtctg
    11881 ttgcaaacgt gcgagatgcg tagagaatag atttttcata aggaataaaa tgactcaatt
    11941 aactgtaaat aaagaattag ataccttggg gctacgttgc ccagagccgg tgatgctcac
    12001 ccgtaaaaca atccgtaata tggaagaggg agaaattttg catatcatcg ccgatgaccc
    12061 ggccactacc cgtgatattc cgagtttctg cgaatttatg gatcaccaat taattcaaaa
    12121 agaggtggac tccaccccat accattactg gattaaaaaa ggcttggaat aaaccacaag
    12181 cggtcgattt tagccataaa attgcaaatt tatgcacaaa atcgaccgct tgttttaatt
    12241 aatgacggcg aggttcgtcc tcaaaatcgt cattttcatc atcgaaaaat tcaccgtcat
    12301 cgccgtactc atcttcatca gcattcggat cttcaaagta ggttccccag ccctcatact
    12361 ccgcaccggc tttttcaatt aatggcagta actctttttg ttgtgcggta atgagatccg
    12421 cattcaagtg aatttcgctc acaatgtcgc atacaaaaat cactttacca ttttcgtctt
    12481 ccacttcttc cgcttcggaa atttcatagc ccagcttata ggcatcaact actaattttt
    12541 ccaatttatc aaaatcgtgg tgagcaacgt ggtgttcaat aatataaagg gcttcagggt
    12601 ctgaaccatc ggctaataat gatgaaatgg tttcatcggt ttctgtgcgt aattcatcga
    12661 gattgtacat attgaattcc ttacttattc tgtgattaat tttggtgcaa accagctatc
    12721 taatttgttc gacagcttat caataccgat tttattcagt gcggaataag cctctacttg
    12781 gatatcacct tggaatggta aaatcgcttc tcttaccatt tttacctgct tagagcgtgc
    12841 cgattggctt aacttatccg ctttggtcaa cagcagtaac accggcaagt tggctgacac
    12901 tgcccattca atcatctgtt gatctaaatc tttcaacggg tggcgaatat ccattaaaat
    12961 caccacaccg cctaaacatt cacgcttttg taaatactcg cctaatgctt tttgccactg
    13021 gattttcatc tgttcaggta ctgctgcata gccatagcca ggtaaatcca ctaatttaca
    13081 attcgtttca accttaaaca agttaatcaa ctgcgttcgc cccggtgttt tggaagttcg
    13141 ggctaaactt ttttggttag ttaaagcgtt caaagcagtc gatttaccgg catttgaacg
    13201 cccggcaaaa gcaatctcca cacctgtatc ttcaggtaaa tgacgaatat ccggtgctga
    13261 agttaaaaaa tgggttttat gatagtttaa tttcatttta ttctctaaat ttaaaagata
    13321 agccttgctc gccatattga ttcggttcag gattaccggc aaatacaccc cattctaaaa
    13381 agagcaacat tccaataaat gccggcatca cctgtccaag caatatctgc ataattcctt
    13441 gtgaataagg agctgcaaga taacaaataa tcggcactaa tgccattaac agggcttttg
    13501 ccgaacgatt tcggtcgtgt aatcgtttaa taataatagc agacaggcta aatcctgtaa
    13561 ttataagcgg tagcacactc aataaagaca attcagccaa atttatccac atagcaacca
    13621 taaacaggaa aagaaagtgg attccaaatc caatccaaaa acctcgtcta tttagcctac
    13681 cgttaaaact aaaaagtgct ttataccaac tcattttcta ccctaaagct acatcaagta
    13741 ccatcattac tacaaagcct aacatcaggc ttaaagtcgc aatatcagta tttcccgaac
    13801 tttgcgattc cggaatcagt tcttctacga ccacaaaaat catcgctccg gcagcaaagg
    13861 caagagcata aggtaaaata gccgtcatcg acagcacaaa aaccgcccca atcaccgccg
    13921 caataggctc aaccactgct gacatagagc cataccaaaa tgctttcttc cgactatgcc
    13981 cttcgcctcg aattggcaat acaagtgacg agccttcggg aatgttttgt aaccctattc
    14041 cgattgccaa accgatagct cccataatgg aagcatctac gcctgaaact tgggttgcca
    14101 aagcaccgaa agccacccct atggctaatc cttctggaat attatgaatg gtaatcgcaa
    14161 gaaaaagcaa agtagatttt gataagcctt gtttaagttg atcatttcct tcagcttgct
    14221 caatcggctt actcaagtgc aaatgcggca caacatagtc aattaatcga ataaaagctc
    14281 caccggcaag aaagccaatc gctgcaggca gccaagctaa agagccataa tccgcctcgg
    14341 catattctaa agaaggtgca agcaaagacc aaaacgaggc tgcaatcatt acacctgcgg
    14401 caaagcccat catactgtct aataattttc gattaaccga tttaaaaaaa tagacaaatg
    14461 acgaaccgaa aatcgtacaa ccccaagtaa ataaacccgc taaaaaagct tgccatattg
    14521 gagaaagtga aaggaaatat tcaaacaaga aatagtacca gctaaaataa atattggctc
    14581 attctatcaa agattcaggg ttattaatat agtgtagcca aaggctcaac gaagatttca
    14641 cttgtaaaac ttagcaagaa aataaccgct tgcatttccc tttcataaat acaatgaaaa
    14701 tcctaacaag cggtcatttt ccgtgagttt tttaccttta ccacaacaac aaaaaaccgc
    14761 ctgtatctct acaggcggct ctttcttgga ttacttgtac tttgtttatt tgtacttatt
    14821 ttgcttttgc ttaagttttc gcttttgtaa cttttagctt tcgcttaagc tcgcttaaat
    14881 taaaacccga cgatgctcta ctctcacatg gcgaatcacc acactaccat cgacgttact
    14941 gcgttttact tctgagttcg gtatggggtc aggtaggacc acagcactct tgtcgtcggg
    15001 aaaattcttt tctatttttg aatttcttta agttaacttc ctaatctaac tcttagttca
    15061 ctttaatagt tagattaact tccttaactt cgattgattt cttctctagt ttcgttcttc
    15121 ttctcaatac aaaaacaagc ctaaaaacat ttgagcgttg tatagttaag cctctcgggc
    15181 aattagtact ggttagctca atgtctcaca acacttacac acccagccta tctacgtcgt
    15241 agtctccaac aacccttaca cacttatagt gtgggagaac tcatctcgag gcaagtttcg
    15301 tgcttagatg ctttcagcac ttatctcttc cgcatgtagc tacccagcaa tgcctctggc
    15361 gagacaactg gaacaccagt gatgcgtcca ctccggtcct ctcgtactag gagcagcccc
    15421 tctcaattct ccaacgccca cggcagatag ggaccgaact gtctcacgac gttctaaacc
    15481 cagctcgcgt accactttaa atggcgaaca gccataccct tgggacctac ttcagcccca
    15541 ggatgtgatg agccgacatc gaggtgccaa acaccgccgt cgatatgaac tcttgggcgg
    15601 tatcagcctg ttatccccgg agtacctttt atccgttgag cgatggccct tccattcaga
    15661 accaccggat cactatgacc tgctttcgca cctgctcgac ttgtctgtct cgcagttaag
    15721 cttgcttata ccattgcact aacctcacga tgtccgaccg tgattagcaa accttcgtgc
    15781 tcctccgtta ctctttggga ggagaccgcc ccagtcaaac tacccaccag acactgtccg
    15841 agaccgcgtt ccgcaatctt cgttagaaca tcaaacgtta aagggtggta tttcaaggac
    15901 gcctccacaa tcactggcgt gactgcttca aaggctccca cctatcctac acatcaaaat
    15961 tcaatgttca gtgtcaagct atagtaaagg ttcacggggt ctttccgtct agccgcgggt
    16021 acaccgcatc ttcacggcga tttcaatttc actgagtctc gggtggagac agcctggcca
    16081 tcattatgcc attcgtgcag gtcggaactt acccgacaag gaatttcgct accttaggac
    16141 cgttatagtt acggccgccg tttactgggg cttcgatcag gagcttctct tgcgataaca
    16201 ccatcaatta accttccagc accgggcagg catcacaccc tatacgtcca ctttcgtgtt
    16261 tgcagagtgc tgtgttttta ataaacagtt gcagccagct ggtatcttcg accggttcaa
    16321 ccttcatccg caagggacta caatctacgc cggcgcacct tctcccgaag ttacggtgct
    16381 attttgccta gttccttcac ccgagttctc tcaagcgcct gagtattctc tacctgacca
    16441 cctgtgtcgg tttatagtac ggtttataat aacctgaagc ttagtggctt ttcctggaag
    16501 cgtggtatcg attacttcat ctccgtagag actcgtcatc acttctcggt gttaaggaag
    16561 accggatttg cctaatcttc ccacctaccg gcttaaacag acatccaaca gtctgctaac
    16621 ctaaccttct ccgtccccac atcgcagtta ttacaagtac gggaatatta acccgtttcc
    16681 catcgactac gcttttcagc ctcgccttag gggccgactc accctgcccc gattaacgtt
    16741 ggacaggaac ccttggtctt ccggcgaacg agtttttcac tcgttttatc gttacttatg
    16801 tcagcattcg cacttgtgat atctccagca gacttctcaa tccaccttca tcgacttaca
    16861 caacgctccc ctacccaaca gactttcgtc tgatgccgca gcttcggtgc tatatttgag
    16921 ccccgttaca tcttccgcgc aggccgactc gactagtgag ctattacgct ttctttaaat
    16981 ggtggctgct tctaagccaa catcctagct gtctaagcct tcccacttcg tttcccactt
    17041 aatatagact ttgggacctt agctggcggt ctgggttgtt tccctctcca cgatggacgt
    17101 tagcacccac cgtgtgtctc ctgagtatca ctcttcggta ttcgcagttt gcatcgggtt
    17161 ggtaatccgg gatggacccc tagccgaaac agtgctctac ccccgaaggt gtccgctcaa
    17221 ggctctacct aaatagattt cggggagaac cagctatctc ccggtttgat tggcctttca
    17281 cccccagcca caagtcatcc gctaattttt caacattagt cggttcggtc ctccagttag
    17341 tgttacccaa ccttcaacct gcccatggct agatcaccgg gtttcgggtc tataccttgc
    17401 aactacacgc ccagttaaga ctcggtttcc ctacggctcc cttattcagt taaccttgct
    17461 acaaaatata agtcgctgac ccattataca aaaggtacgc agtcacaaga ttactcttgc
    17521 tcccactgct tgtacgcaca aggtttcagg ttctatttca ctcccctcgc cggggttctt
    17581 ttcacctttc cttcacagta ctggttcact atcggtcaat caggagtatt tagccttgga
    17641 ggatggtccc cccatcttca aacaggatat cacgtgtccc gccctacttg ttgttagcct
    17701 agtaccacaa tggagtttta aggtacggga ttatcaccct ctacgattgt ccttcccaga
    17761 acattcccct aactttactg ctatcactaa ctggctcttt cgcgttcgct cgccgctact
    17821 aacgaaatct cggttgattt cttttcctcg gggtacttag atgtttcagt tctcccggtt
    17881 tgcctcacac agctatgtat tcactgggtg atagtaggtt cttcacctac tgggtttccc
    17941 cattcggaca tcttggatta aacgcctctt atcgactcat ccaagctttt cgcagattgg
    18001 cacgtccttc ttcgcctctg attgccaagg catccacctt gtgcgcttag tcacttaact
    18061 atacaacctc aaatgttttc taaaacttct caaaaataaa agtaaaaaaa caatgaagtc
    18121 agttttacaa ctaaacactt gactgctttt gttcagtcaa gattttttct actcagactt
    18181 tcaatttatt cgttatcact tatgtataat tacttatgcg taacgaactt gaaatatctc
    18241 tcagtttttc agcttgtttc catattgtta aagaacaaag ataatggctt tcgcctatca
    18301 tcatacctaa aattgcaaat aatccggtat ttttaaccgc ttgtaatctt aggtatgatg
    18361 ataaagtcac gatgattggt ggagataagc gggatcgaac cgctgacctc ctgcgtgcaa
    18421 ggcaggcgct ctcccagctg agctatatcc ccatttcatc ttccgttttc ttcactcata
    18481 gtcgcttcgc tttcgcttgc cttctgagtg gtgggtctga gtggacttga accaccgacc
    18541 tcacccttat caggggtgcg ctctaaccac ctgagctaca gacccaacgg atgaccttcg
    18601 gttttttgtc ttctt
//
LOCUS       DANLRW010000044        18539 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.044, whole genome shotgun sequence.
ACCESSION   DANLRW010000044 DANLRW010000000
VERSION     DANLRW010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18539)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18539)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18539
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.044"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..1547)
                     /locus_tag="PXA71_001284"
     CDS             complement(<1..1547)
                     /locus_tag="PXA71_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5105400.1"
                     /translation="MKKKQQYRKSTINNTNASQQNSGEVLNSVNYQTLLEDYLNKISF
                     SNRQFIDELKTEHNKKLKELENKVSSLEQTNHVQQQDISRLNILLEQKNIEENRNLER
                     MISYQLGYALINACKSFSGFISLPSELLKIRKLAKDKKQQKLLPSSPVANTPKQQTAL
                     VTSAPARSQSIDLTRGLTLLDPISELCWADAFTGYPLVRKSYADHIAGSTCKFAFFES
                     AWQANKGSWIYAFTSPGLKHNNAQALLDAIQKLKDKSIPIIFWNKEDPMHYEMFKPIA
                     EKVDYVFTTDQLVVDKYKKELGHSNIWALPFAAPIKVTNPIGRFSLDTETVCFAGTYY
                     AQNHENRKKQMDMLLPALLAYNGCIYDRASKDTSGKYAYPEQYTHLIREGVNFNEIVK
                     LYKKFKVFLNVNTITQSTTMMSRRVYELLASGTPVVSTPSKAITAQFPGIVITVNNEK
                     EAELAVHKLLTDSYYWHKQSMLGIREVMSKHTYENRWEFACSVINNEPIKEKTPSVRI
                     IAVYHNYL"
     gene            complement(1551..2822)
                     /gene="wecC"
                     /locus_tag="PXA71_001285"
     CDS             complement(1551..2822)
                     /gene="wecC"
                     /locus_tag="PXA71_001285"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL5105401.1"
                     /translation="MSNFNTISVVGLGYIGLPTATVFAQHGLNVIGVDVNQHAVDHIN
                     QGKIHIVEPDLDVAVHQCVSSGKLKATLTPEPAEAFLIAVPTPFKGEDYEPDLSYIQA
                     ACKAIAPVLEKGNLVILESTSPVGATEQMAEWLAEYRPELSFPQQAGEDSDIRIAHCP
                     ERVLPGQVMHELIENDRIVGGMTNKCSVQAVNLYKTFVKGDCIVTNARTAEMCKLTEN
                     SFRDVNIAFANELSIICDRLDINVWELIALANRHPRVNILQPGCGVGGHCIAVDPWFI
                     VNKTPDLAKIIRTAREVNDHKPEWVISKMNEAVIYALQKTGKSIDQIKIACLGLAFKP
                     DIDDLRESPALKITEKLAEKYPNQVFAVEPNVEELPKKLANKNISLISVDEALEVADV
                     VVVLVDHSEFKLVKPVFLNDICVVDTKGIWR"
     gene            complement(2837..3952)
                     /gene="wecB"
                     /locus_tag="PXA71_001286"
     CDS             complement(2837..3952)
                     /gene="wecB"
                     /locus_tag="PXA71_001286"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015703970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDL5105402.1"
                     /translation="MRYLIVFGTRPEAIKMAPLVEGFKKSGLNFKVCVTAQHRQMLDQ
                     VLELFEITPDYDLDIMSNKQTLSTVTSAILEKIQPVIAEYKPTTIFVHGDTATTLASS
                     LAAYYNQIDIAHIEAGLRTHNIYSPWPEEGNRKLTAALAKYHFAPTQSTKKNLLNENI
                     AEGTIYVTGNTVIDALFLACKKLDENIDLLSSLQEKFSYIKSKRTILITGHRRENFGN
                     GFENICKAVSTLASDFPDVQFIYPVHLNPNVREPVNRLLADKSNVHLIEPCDYLSFVY
                     LMRESYLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVEAGTVKLVGTAQSEIIKQV
                     TELLNDQAAYTKMSEAHNPYGDGTAVKQILSVFQSKQ"
     gene            4185..6275
                     /locus_tag="PXA71_001287"
     CDS             4185..6275
                     /locus_tag="PXA71_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HDL5105403.1"
                     /translation="MLSYLVFFSKIIKIPNLKGFLPHCEIRRRPLVGKTFIAQKRPNQ
                     IIGWGLRPSAVGSRAYAQKHQLPYIALEDGFLRSLGLGVKGYPPFSLVYDDIGIYYDT
                     TCPSRLEKLLLEKPLQDQEQIKLAERALSQILTYGLSKYNHALDFSEIPSAKEKIVLV
                     IDQTFGDMAVKYGQASEVDFNKMLETAISENPEAQIWVKTHPDVLSGKKKGYLTDLPQ
                     YTDRVRIITEDVNPASLIKLCEKVYCVTSQMGFEALLLGKKVVTFGVPWFAGWGVTDD
                     RNEAVQLLVQQNRRKDRSLLQLFYAAYFDYSRYINPNTGEKGSIFDVIDYLYKAKRLN
                     QRLSGNLYCIGMSLWKQAVIKPFFNLPQCRLHFVRSLNSLKKRPLADNAKILVWSNGK
                     ADVLQFAQQNNIPLLRMEDGFIRSVGLGANLVAPLSLVVDDLGIYFNAENTSRLEQIL
                     LSAEHFSETDLSYAETLRQKLVASHIGKYNVGGGDVKFNAQGKKIILVPGQVEDDASI
                     KSGSPQIKRNLDLLKKVRELNPSAYIIYKPHPDVVSGNRVGQIPTAETRRFADQMVDN
                     ANILDCILIADEVHTMTSLAGFEALLRGKKVHCYGLPFYAGWGLTEDRLKSARRGKSL
                     TLSQLIAATLIYYPLYVDPISRQFIDANQAIHILSQQKRNLTNQRIKRSWVSKQYGKL
                     QHLYRAFKYASHTK"
     gene            6298..7530
                     /locus_tag="PXA71_001288"
     CDS             6298..7530
                     /locus_tag="PXA71_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5105404.1"
                     /translation="MEHYLDELIINSQRILLLQGPIGSFFTEFARWLESEQKEVFKLN
                     FNGGDEYFYPNNSPNTFPYYDSLDNFEAYLIQFCQTHQIDNILCFGDNRYYHKVAKNV
                     CLKLKLVFWAFEEGYFRPEYITLEKWGVNAFSPIPKNHTFFLPYAELPVVSEPEKVSK
                     GFRCMAGKAIPYYWNAYKKRKAYAKYQHHRFLNLKYYLNLWTRSGIKRICYWLHDKGF
                     AKRVEKGEFGEFFIVPLQVYDDTQVRIHSEQKSVERFLREVLNSFAKFAPAHLNLIIK
                     HHPMDRGFIDYKMVIYEFLEQYPQLNGRVFYIHDVPLPVFLRYGKGMVTLNSTSGLSA
                     LLHNMPVKTLGRANYDFEGLTDKQPLDTFWANPQPPNSEVFKGYRQFHLHKTHINGNF
                     YHKSILRYPYNWENEAHR"
     gene            7611..8672
                     /locus_tag="PXA71_001289"
     CDS             7611..8672
                     /locus_tag="PXA71_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5105405.1"
                     /translation="MAIYAIWNNKGGVGKSYLTFQIACEYAKQYPAKKVLVVDLCPQA
                     NSSSMLLGGIEKGEQELAKIHSQVNKNTISGYISERLVSPYRSINSATKYVTQVSTIN
                     EYVPKNVYLVVGDEELEIQSSGILHASQAVHVPDSWRLVHLWVRDLVSDIQNAWDNDD
                     NVVFIDCNPSFTIYTELALAASDRLIIPFSADGSSKRAVKSVLSLVYGVKRHSGDVSS
                     HFYTESQKSKLALPQIYMYVGNRLTINAKASATAFKTVVEEIGDEIYNIWKTNANLFC
                     IHPAGVGTPTNKSSFRKMFQYEVRDANTASVVSGALGIPISRLSSGKRDVLGKNVMVN
                     QSQLDAQVPNIQNLVQCIE"
     gene            8824..10476
                     /locus_tag="PXA71_001290"
     CDS             8824..10476
                     /locus_tag="PXA71_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HDL5105406.1"
                     /translation="MTIFQVAQNWLAQDPDAETRAELEQLIQAAESDEKAKAELTARF
                     DGRLQFGTAGLRGRLQAGSMGMNRVLVAQAASGLAGFIKGYDKEPSIVIGYDGRKNSD
                     VFARDTAEIMAAAGIKTYLLPRKLPTPVLAYAIQYFDTTAGVMVTASHNPPEDNGYKV
                     YLGKANGGGQIVSPADKEIAALIDKVAAGDIRDLPRSQDFTVLDDEVVNAYIEKTASL
                     AKRPKAEINYVYTAMHGVGYEVLSKTLEKAGLPQPYLVSEQIQPDGSFPTVNFPNPEE
                     KGALDLAIKLAKEKNAEFIIANDPDADRLAVAVPDAQGNWKPLHGNVIGCFLGWYLAK
                     QFHAQGKQGVLACSLVSSPALAEIAKKYGLSSEETLTGFKYIGKVENLLFGFEEALGY
                     LVDPDKVRDKDGISAAIMFLDLVCSLKQEGKTLADYTTEFVQEFGAYVSGQISIRVCD
                     LAEIGKLMTALRNNPPSEIGGFKVAEFIDHTKTTRQNDILVFVLENGSRLIARPSGTE
                     PKIKFYLDARGTDAENAEQVLAQFDESVRSLLRQEEYGKQDC"
     gene            10529..11463
                     /locus_tag="PXA71_001291"
                     /pseudo
     CDS             10529..11463
                     /locus_tag="PXA71_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250489.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
     gene            complement(11485..13566)
                     /gene="recG"
                     /locus_tag="PXA71_001292"
     CDS             complement(11485..13566)
                     /gene="recG"
                     /locus_tag="PXA71_001292"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDL5105407.1"
                     /translation="MSEQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRY
                     EDRTRITPIADVRPESFATIEGYVQLTEVQFGKRPILSVTLSDSTSKIMLKFFNFNAG
                     MKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRDNQPLVLAETLTPIYSTTEGLKQ
                     ASLRKLTEQALALLEKVKVAELLPDEYNPHKYSLKEALQLLHRPPPTISAEVLEKGDH
                     PAQKRLIFEELLAHNLAMQQLRLGVKQQYAEALTYQTDIKQRFLDSLPFKPTHAQSRV
                     TADIEQDLAKPHPMMRLVQGDVGSGKTLVAALAALLAIDNGKQVALMAPTEILAEQHA
                     NNFANWLNPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDNVEFHHLA
                     LVIIDEQHRFGVHQRLTLREKGAKENNYPHQLIMTATPIPRTLAMTVYADLDTSIIDE
                     LPPGRTPITTVVISEDRRAEIVQRVYQVCKQEHRQAYWVCTLIDESEVLEAQAAAAIA
                     EDLQRALPDLRIGLVHGRLKPQEKQAIMAEFKAANLDLLVATTVIEVGVDVPNASLMI
                     IENSERLGLAQLHQLRGRVGRGATASHCVLMYKPPLGKISSKRLQVMRDSQDGFYIAE
                     KDLEIRGTGEILGTKQTGMAEFKVADLMRDRKMIPLVQRYAKQIISENQPLAEALIKR
                     WLDNKAEYTNA"
     gene            complement(13570..13998)
                     /locus_tag="PXA71_001293"
     CDS             complement(13570..13998)
                     /locus_tag="PXA71_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL5105408.1"
                     /translation="MYRYLFDTNIVSELYKLRNDKMDVNVRQWLRGVNPSQTNISCIT
                     LSEIKTGILLKARKDKEQSDRLNDWFENNVLKAYQTKAFVVNNDIALLASEYHIPNKM
                     DLNDAYIAATAKYHNLILVTRNTKDFIRCDVRLFNPFETA"
     gene            complement(13998..14285)
                     /locus_tag="PXA71_001294"
     CDS             complement(13998..14285)
                     /locus_tag="PXA71_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system
                     prevent-host-death family antitoxin"
                     /protein_id="HDL5105409.1"
                     /translation="MAITITSREFNQNASKVLKMAEKEPVFITKWGKIVNVVSSYMDY
                     QQKKPSEPSFEELFASSENEDVSDEFWQEFEQTLVEIRKSNKPRPVDFGDE"
     gene            14449..16332
                     /gene="htpG"
                     /locus_tag="PXA71_001295"
     CDS             14449..16332
                     /gene="htpG"
                     /locus_tag="PXA71_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HDL5105410.1"
                     /translation="MANNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAA
                     DKLRFKALSEPALYEGDGELRVRVSVDETLGTITIADNGIGMTREQVIDHLGTIAKSG
                     TKEFLNALGTDQAKDSQLIGQFGVGFYSSFIVADKVTVKTRAAGVPAEQGVIWESAGE
                     GDYTVADLEKKERGTEIILHLREDEKEFLNEWRLREIIGKYSDHIGLAVEIQTNEYDD
                     EGKASGQKWEKINKAQALWTRSKNEISDEEYTEFYKHLSHDFADPLIWSHNKVEGKQE
                     YTSLLYVPSKAPWDLFQREQKHGLKLYVQRVFIMDDAEVFMPNYLRFMRGLLDTNDLP
                     LNVSREILQENKVTQSLRSALTKRALQLLEKLAKDDAEKYAQFWQAFGVVLKEGVGED
                     FANKQQVAGLLRFASTQRDDSEQAVSFADYIARMKEGQKAIYFLTADSYQAAKNSPHL
                     ELFHKKGIEVLLLSDRIDEWLVSHLTEFDGKPLQSITKSDLDLGELADKQEEESQKAQ
                     QAEFGSFLERAKGYFGERVKNVVLTHRLTDTPAVVSTDSDEMTTQMAKLFAAMGQQAP
                     EVKYTFELNPDHPMVKKVADLADEAEFADWIELLFEQALLAERGTLENPTAFIKRVNK
                     LLG"
     gene            16710..18425
                     /gene="proS"
                     /locus_tag="PXA71_001296"
     CDS             16710..18425
                     /gene="proS"
                     /locus_tag="PXA71_001296"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDL5105411.1"
                     /translation="MRTSQYLFSTLKEMPNDAQVVSHQLMLRAGMIRPMASGLYNWLP
                     TGIKVLKKVENIIREEMNKGGAIEVLMPVVQPAELWVESGRWNDYGPELLRFKDRGER
                     DFVLGPTHEEVITDLVRREVSSYKQLPLNLYQIQTKFRDEVRPRFGVMRSREFVMKDA
                     YSFHTTQESLQETYDVMYQVYSNIFTRLGLDFRAVQADTGSIGGSASHEFQVLASSGE
                     DDVVFSTESDFAANIELAEAVAVGERQAPTAEMQLVDTPNAKTINELVENHGLAIEKT
                     VKTLVVKGATEEQPLIALVIRGDHELNEIKAQKHPLVADPLEFADEAEIKAKIGAGVG
                     SLGVVNMPIPVIIDRSVALMSDFGCGANIDGKHYFNVNWERDVAVPEIADLRNVVEGD
                     PSPDGKGTLQIKRGIEVGHIFQLGKKYSEAMKATVQGEDGKPLVMTMGCYGIGVTRVV
                     AAAIEQHYDDRGIIWPCDEMAPFTVAIVPMNMHKSEKVQAFAEELYANLKAQGVEVIF
                     DDRKERPGVMFADMELIGVPHMVVIGEKNLENGEIEYKNRRSGEKQMIAKESLLAFLK
                     ANVKA"
BASE COUNT         5464 a         3550 c         4026 g         5499 t
ORIGIN      
        1 agataattat gataaaccgc gataattcga acactaggtg ttttttcctt tattggttca
       61 ttattgatta cactacacgc aaattcccaa cgattttcat aagtatgttt tgacattact
      121 tcacgtatgc ccagcatgga ctgcttatgc caataatagc tatctgtcag taatttatgg
      181 acagcaagct cagcttcttt ctcattattt acagtaataa caatgccagg gaattgtgcc
      241 gtaatagctt tagatggcgt agatacaaca ggtgtgccgc tagctagaag ttcatacaca
      301 cgtcttgaca tcattgtggt tgattgagtg atggtattaa catttaaaaa tactttaaat
      361 ttcttataca acttaactat ctcattgaaa tttacccctt ctcggataag atgagtgtat
      421 tgttcaggat aagcatattt gccacttgta tctttagatg ctctatcata aatacagccg
      481 ttgtaagcca ataatgcagg taacaacata tccatctgtt ttttacgatt ttcatgattt
      541 tgagcataat atgttccagc aaaacaaact gtttctgtat caagagaaaa tctgccaatt
      601 ggattggtta ctttaattgg ggcagcaaaa ggcaaagccc aaatatttga atgcccaagt
      661 tcttttttat atttatctac aaccaattga tctgttgtaa aaacataatc tactttttct
      721 gcgattggct taaacatctc ataatgcatt ggatcttctt tattccaaaa aatgatagga
      781 atgcttttat cttttagttt ctgaattgca tctaacaatg cttgagcatt attatgtttt
      841 aagcctggtg aagtaaaagc atagatccat gaccctttat ttgcctgcca agcactttca
      901 aaaaaagcaa atttacacgt gctgccagca atatgatcag cataagattt tctaactaaa
      961 ggataccctg taaaggcatc tgcccagcat aattcagaaa taggatccag tagtgtcaat
     1021 cctcttgtca agtcaataga ttgagatcgg gcaggtgcac ttgtaactaa tgcagtctgt
     1081 tgctttggtg tatttgcaac aggggaagat ggcaataatt tctgctgttt cttatcctta
     1141 gctaacttcc tgatttttaa taattctgaa ggcaaggata taaaaccact aaatgattta
     1201 caagcgttta ttaaagcata tcctaactga taagaaatca ttctttcaag atttctattt
     1261 tcttcaatgt tcttttgctc taacaaaata tttaatctgg atatgtcttg ctgttgaaca
     1321 tgattagttt gctcaaggct gcttacttta ttttctagct ccttgagctt tttattatgc
     1381 tcagttttca gctcatctat aaactgccga ttactaaaac taattttatt taaataatct
     1441 tccagtaatg tttgataatt gacagaattt aatacttcgc ctgaattttg ttgtgatgca
     1501 ttagtattgt taatagtgga tttacgatat tgctgtttct ttttcatcac ttatctccaa
     1561 attcctttag tatccaccac acaaatatca ttcaaaaaca caggtttgac tagtttaaat
     1621 tcgctatgat ccaccaaaac aactacaaca tcagctactt ccagagcttc atcaacagaa
     1681 atcaaagaaa tgttcttgtt agccaatttt ttcggtagct cttcaacatt cggctcaact
     1741 gcaaatactt gatttggata cttttccgcc aatttttcag taatttttaa tgccggactt
     1801 tcacgcaaat cgtcaatatc aggcttgaat gccaacccta aacaagcaat tttgatttga
     1861 tcgatagatt tacctgtttt ttgtaaggca taaattaccg cttcattcat ctttgagata
     1921 acccattcag gtttatgatc gtttacctca cgagcagtgc ggataatttt tgccaagtca
     1981 ggagttttat tcacaataaa ccaaggatct acagcaatgc agtgtccacc tacaccacaa
     2041 cccggttgta agatattgac tcgagggtgt ctgttagcca aagcaattag ttcccataca
     2101 ttaatatcta ggcgatcaca aataatagaa agctcatttg caaaagcgat attgacatca
     2161 cggaaactat tttcggttaa tttacacatt tctgcggtac gggcattggt aactatacag
     2221 tcgcctttta caaaagtttt gtataaattg accgcttgca cagagcattt atttgtcata
     2281 ccacccacaa tacggtcgtt ttcaatcaat tcatgcatca cttgtcctgg tagaactcgt
     2341 tctgggcaat gggcgatacg aatatcagaa tcttcacctg cttgctgagg gaagcttagc
     2401 tctggacggt actcggcaag ccactcagcc atctgttctg ttgcaccaac cggagaggtt
     2461 gattctaaaa tgactaaatt acctttttcc agcacaggtg caattgcttt gcaagcagct
     2521 tgaatataac ttaaatcagg ctcataatcc tcgcctttaa aaggcgttgg tacagcaatt
     2581 aaaaatgctt ctgctggttc aggtgtcagt gtggctttta attttccgct agatacacat
     2641 tggtgaacag caacatctaa atcaggctcg acaatgtgaa ttttcccttg attgatatgg
     2701 tctacggcgt gctgattaac atctacgcca attacattta gaccgtgttg ggcaaataca
     2761 gtggcggttg gtaagccaat atagcctaag cctactactg aaatggtatt aaagttcgac
     2821 atacatttat cccttattat tgttttgatt gaaatactga gagaatttgt ttcacagctg
     2881 tgccatcgcc ataagggttg tgagcctcag acatttttgt ataagcagct tgatcattga
     2941 gtaactcagt aacttgttta ataatttcag attgtgcagt tccaacaagt tttactgttc
     3001 cggcttctac agcttccggt ctttctgttg tgtctctcat tactaatacc ggttttccta
     3061 atgatggggc ttcttcttga atacctccgg agtcagttaa gataaggtaa gactctctca
     3121 ttaaataaac aaaggagaga tagtcgcaag gctcaatgag atgcacattg gatttatccg
     3181 ctaataggcg attgaccggt tctcttacat ttgggttgag gtgtacgggg tagataaatt
     3241 gaacgtcagg gaaatcagac gctaatgttg aaacggcttt acagatgttc tcaaaaccat
     3301 taccgaaatt ttcgcggcga tgtccggtga tcaaaatagt acgcttactt tttatataag
     3361 aaaatttctc ttgtagcgag cttaataaat caatattttc atctaatttt ttgcaagcga
     3421 ggaataaggc atcaattacc gtattacccg ttacataaat ggtgccctca gcaatatttt
     3481 cgttgagtag atttttcttg gtgctttgtg ttggtgcgaa atggtatttt gccaaagcag
     3541 ctgttaattt gcgattgcct tcttccggcc aaggagagta gatattatgc gttcttagac
     3601 ctgcctcaat atgagcgata tcaatttggt tgtaataggc tgctaatgaa gaggcaagag
     3661 tggttgctgt atcgccatga acaaaaatag tagttggttt gtattcggca ataacaggtt
     3721 gaattttttc taaaatagca gaagttacag tagaaagtgt ttgcttattg ctcataatat
     3781 ccaggtcata atctggagta atttcgaata attctaaaac ttggtccagc atttggcggt
     3841 gctgagcagt aacacagact ttaaaattta gaccgctttt cttaaagccc tcaactaagg
     3901 gagccatttt gattgcctca ggacgagtac cgaagacgat gagatagcgc atttattact
     3961 cctttaaaaa tatagataaa actaaaatac actagatgta agtaattttg ttaaattagt
     4021 tataaagatc gtgttcatta taatgttttt atggagttag gtgtataaaa acttttactt
     4081 tgtagatatt ttatgtaaat tcttgtaagt atccggtagg ttagaaatta tcatgttatc
     4141 tgctatggta caatacataa atacgaatat gagattaatt ttttatgctt agctatttag
     4201 tgttttttag taaaattata aaaatcccta atttaaaagg ttttttacct cattgtgaaa
     4261 ttaggcgaag acctcttgtg ggaaaaacct ttattgctca aaaaagaccg aaccaaatca
     4321 tcggctgggg gcttcgtcct tcagcggtgg gatcaagagc ttatgcacaa aaacatcaac
     4381 ttccctatat tgcattagaa gacggctttt tacgctcact agggctgggt gtaaaaggct
     4441 atccgccatt ttctttagtt tatgatgata taggtattta ttacgatacc acctgtcctt
     4501 ctcgtttaga aaagttattg cttgaaaaac ctttacagga tcaagagcaa atcaagcttg
     4561 cagagagagc attatctcaa atcttaactt acggactttc taaatataat cacgcactag
     4621 attttagtga aatcccctct gccaaagaaa aaatcgtgtt agttattgac caaacctttg
     4681 gtgatatggc ggtgaaatat ggtcaagcga gtgaagtgga tttcaataaa atgttggaaa
     4741 cggcaatcag tgagaatcca gaggctcaaa tttgggtaaa aactcacccc gatgtattaa
     4801 gtggcaagaa gaaaggctat ttgaccgatt tacctcaata tactgatagg gtcagaatta
     4861 ttactgaaga tgtgaatccg gcaagtttga ttaaattgtg tgagaaagtc tattgcgtaa
     4921 cttcgcaaat ggggtttgag gcattattat taggtaaaaa agtggttacc tttggtgtac
     4981 cgtggtttgc cggttggggg gtaacagatg atcgtaacga agcggttcaa ctattagttc
     5041 aacaaaatag acggaaagat cgttcattac tgcaactttt ttatgctgcg tattttgatt
     5101 acagccgtta tattaatccg aataccggtg agaaaggctc tatttttgat gtcatcgatt
     5161 atctatataa agccaaaaga ttaaatcagc gcttaagtgg gaatctatac tgtattggta
     5221 tgtcgctatg gaaacaggcg gtaattaagc cgttttttaa tttgccacaa tgtcgattac
     5281 attttgttcg ttcgctaaat tctttaaaaa aacgaccgct tgcagataat gcaaaaattt
     5341 tagtttggag caatggcaaa gcggatgtct tgcaatttgc acagcagaat aatattccat
     5401 tgttaagaat ggaagatgga ttcattcgct ctgtcggact aggcgctaat ttagttgcac
     5461 cgctttcttt agtagtcgat gatttaggca tttattttaa tgcagagaac acttcacgat
     5521 tagaacaaat tttattgagt gcagagcatt tttctgaaac tgatttgtct tatgctgaaa
     5581 cattaaggca gaaattggtg gctagccata ttggaaaata taatgtgggc ggtggcgatg
     5641 taaaatttaa tgctcaaggt aaaaaaataa ttcttgtacc ggggcaggta gaagatgacg
     5701 cttcgatcaa atcaggttct ccacaaatta aaagaaatct ggatttactg aaaaaagtga
     5761 gggaattaaa ccctagtgcc tatattattt ataagcctca ccctgatgtg gtaagtggta
     5821 atcgagtcgg tcagattcct acggcagaaa cacgcaggtt tgcggatcag atggtggata
     5881 atgccaatat tttagattgt attttaattg cagatgaagt gcatacaatg acatctttag
     5941 ccggtttcga agcattatta agaggtaaaa aagtgcattg ctacggatta cctttttatg
     6001 ctggttgggg attgacggaa gatagattga agtcggcacg cagaggtaaa tctttgacat
     6061 tatctcagtt aattgccgca acattgatat attaccctct gtatgttgat cctataagca
     6121 ggcagtttat tgatgccaat caagcgattc atatattgtc acaacagaaa cgaaacctaa
     6181 ccaatcaaag gattaaacgt tcttgggtga gtaaacaata tggaaaatta cagcatcttt
     6241 atcgtgcgtt taaatatgct tcccacacta aataagcgta gagggtagga aattaagatg
     6301 gaacattatt tagatgagct aatcatcaat agccagagaa ttttattgtt acaaggcccg
     6361 ataggctctt ttttcactga gtttgcccgt tggttagaaa gtgagcaaaa agaggtcttc
     6421 aagttaaatt ttaatggcgg agatgaatat ttctatccaa ataatagccc gaatactttt
     6481 ccttactatg atagcttaga taattttgaa gcctatttaa ttcagttttg ccaaactcat
     6541 caaatagata atatcttatg ttttggcgat aatcgttatt atcataaagt ggctaaaaac
     6601 gtttgcttga agttaaagtt ggtcttttgg gcgtttgaag aagggtactt taggccagaa
     6661 tatattacgt tggaaaaatg gggtgtaaat gctttttctc caatccctaa aaatcacact
     6721 ttctttttgc cttatgccga gttaccagta gtcagtgaac cagaaaaagt atctaaaggc
     6781 tttagatgta tggcgggaaa agcaatcccg tactattgga atgcctataa aaaacgtaaa
     6841 gcatacgcaa aatatcagca tcatcgtttt ctgaatctca aatactacct taatttatgg
     6901 acaaggtcgg gaattaagcg aatatgttat tggttacatg ataaaggctt tgccaagcgg
     6961 gtagaaaaag gagagtttgg tgaatttttc attgtgcctc tacaagttta tgatgacact
     7021 caagtgagga ttcatagtga acaaaaaagt gtagagcgtt ttttaaggga agttctgaat
     7081 tcctttgcca aatttgcacc ggcacatctc aatttaatta ttaagcatca cccgatggat
     7141 agaggattta tagattataa aatggtgatt tatgaattct tagagcaata tccccaatta
     7201 aacggtagag ttttttatat tcacgatgtg ccgttacctg tctttttacg ttatgggaaa
     7261 ggaatggtga ctttaaattc aaccagtggg ctttctgcat tgctccataa tatgccggtc
     7321 aaaaccttag gtagagccaa ttatgatttt gagggattaa ccgataaaca gccattagat
     7381 actttttggg ctaatcctca gccacctaat tcggaagtat ttaaaggcta cagacaattt
     7441 catttacata aaacgcatat taacggtaat ttttaccata aatcgatttt gcgttatcct
     7501 tataattggg aaaatgaagc acacaggtga tggaaaatat taaaataagt aatatcttat
     7561 agctaaatta ttgtgttatt attacaccta ttgttaaaag agggggcatt atggctattt
     7621 atgcaatatg gaataataaa ggtggggttg gtaaaagtta tttaactttt caaatcgctt
     7681 gtgagtatgc aaaacaatac ccagcaaaaa aagttctcgt tgttgattta tgtcctcaag
     7741 caaattcatc atctatgcta ttaggcggca ttgaaaaagg tgagcaagag ttagcaaaaa
     7801 ttcattctca agtaaacaag aatactattt caggatatat ttcagaaaga ttagtaagtc
     7861 cttaccgttc tattaatagt gcaacgaaat atgtaactca agttagcact ataaatgaat
     7921 atgtaccaaa aaatgtttat cttgttgttg gtgatgagga attagaaatc caatcatctg
     7981 gtattttaca tgcttcccaa gctgttcatg ttcctgattc ttggcggcta gtgcatcttt
     8041 gggtgcgtga tttagtttct gatatacaga acgcttggga taatgatgat aacgttgtat
     8101 ttattgattg caatccaagt ttcactattt atactgaatt agcgttggct gcttcagata
     8161 gattgatcat ccctttttcc gctgatggtt catcaaaacg agctgttaag tctgtattat
     8221 ctctagtata tggggttaaa aggcactctg gggatgtcag ctctcatttt tatacagaat
     8281 ctcaaaagag taagttagca ttacctcaaa tttatatgta tgtaggtaat agattaacga
     8341 taaatgccaa agcatcagca accgcattta aaacagttgt agaggaaata ggtgatgaaa
     8401 tctataatat atggaaaact aatgctaatt tgttctgtat tcacccagca ggtgttggta
     8461 ctcctacaaa taaatcaagc ttcagaaaaa tgtttcagta tgaggtgaga gatgcaaata
     8521 cagcatctgt tgtttcaggt gctttaggta ttccaattag tcgcttatca tcaggaaaaa
     8581 gagatgtttt aggtaaaaat gtaatggtga atcagtcaca attagatgct caagttccta
     8641 acattcaaaa tcttgttcag tgtatagaat aaagaaaaat agcgtatatt aagtacgcta
     8701 ttttttattt ctgacaaatc tttttatttg atagctcgat cacaaaaaaa gaaatatctc
     8761 cttttaaata aaaggacttt gggctaatct aaacagagtt tttaaattac ataggagtaa
     8821 aaaatgacta ttttccaagt tgcacaaaat tggttagccc aagacccgga tgcagagacc
     8881 cgtgcggaat tagagcagtt aattcaagcg gcagaatcgg acgagaaagc aaaagcagaa
     8941 ttaacagccc gttttgacgg acgtttacag tttggtacgg ctggtttgcg tggtcgctta
     9001 caagcgggtt caatgggtat gaaccgtgtt ttggtggcac aagctgccag cggtttagct
     9061 gggtttatta aaggttatga taaagagccg tcaattgtta ttggttatga cggtcgtaaa
     9121 aattccgatg tgtttgcccg tgacaccgct gaaattatgg cagcggcagg cattaaaacg
     9181 tacctgcttc ctcgcaaatt gccaacacca gtgcttgcct atgcgattca atattttgat
     9241 accacagccg gtgtgatggt aactgccagc cacaacccac cggaagataa cggctataaa
     9301 gtttatttag gtaaagccaa cggtggcgga caaattgttt cgccggcaga taaagaaatt
     9361 gctgctctga ttgataaagt agcagcaggc gatattcgtg atttacctcg tagccaagat
     9421 ttcacggtgt tagacgatga agtggtaaat gcttatattg agaaaaccgc ctcactagcc
     9481 aaacggccaa aagccgaaat aaactacgtt tacactgcaa tgcacggtgt gggctatgaa
     9541 gtgttaagca aaacattaga aaaagccggc ttaccgcaac cgtatttagt tagtgagcag
     9601 attcagccgg acggttcgtt cccaacggtt aatttcccga acccggaaga gaaaggggcg
     9661 ttagatttag cgattaaatt ggcgaaagag aaaaatgccg aatttattat cgccaacgac
     9721 ccggatgctg accgtttagc ggtagccgtg cctgatgctc aaggcaactg gaaaccactg
     9781 catggcaatg tgatcggctg tttcttaggc tggtatttag ccaaacaatt ccacgcacaa
     9841 ggtaaacaag gcgtgttggc ttgctcgtta gtatcctctc cggcgttagc tgaaattgcg
     9901 aaaaaatatg gtttaagctc ggaagaaacc ttaaccggct ttaaatatat cggaaaagtt
     9961 gaaaacctat tatttggctt tgaagaagcc ttaggttatt tggttgaccc agacaaagtg
    10021 cgtgataaag acggcatttc cgctgccatt atgttcttag atttagtgtg cagcctcaaa
    10081 caagaaggta aaacccttgc ggattacacc accgagtttg tacaagagtt cggggcttat
    10141 gtaagcggtc aaatttcgat cagagtttgt gatttagccg aaatcggcaa attaatgacg
    10201 gcgttacgca acaatcctcc aagcgaaatt ggtggcttta aagtggctga gtttattgac
    10261 cataccaaaa ccacacgcca aaatgacatt ttagtgtttg tgttggaaaa tggcagccgt
    10321 ttgattgctc gcccttcagg tactgagccg aaaattaaat tctatttaga tgctcgtggc
    10381 acagacgctg aaaacgcaga gcaagtgctg gctcagtttg acgaaagtgt gcgttcgctg
    10441 cttcgccaag aagaatacgg caaacaagat tgctaatggc attaattgag ggggagctta
    10501 ggctctccct tttttaaagg agacaataat ggctcaaaaa attattttag attgtgatcc
    10561 ggggcatgac gatgcgattg cgatgatgct cgcttggggg aatccgaata ttgatttgtt
    10621 ggcagtgact acggtggtag gtaatcaaac cttagaaaaa gtatcgcgta atgcgttggc
    10681 ggttgcggaa attgctcata tttgcaacgt tccttttgcc aaaggttgtg ccagaccgct
    10741 ggtgcgtgaa gtggaaaatg ccccggatat tcacggtgat tcgggaatgg atgggcctgt
    10801 actccctgaa tctacccgac aatttgagaa aaaacacgcc gctcaattaa ttattgattt
    10861 gataatgtcg cacccggaga aaagcattac cttagtgccg accggtgggc aataaccaat
    10921 attgctctag ctgcccgcct tgagccccgt attattgaaa gagtgaaaga agtggtgctg
    10981 atgggcggag gttatcacac cggcaactgg agtgcggtgg cagaatttaa tattaaaatt
    11041 gacccggaag ctgctcatat tgtgtttaat gccggttgga aggtgacgat ggtcggctta
    11101 gacttaactc accaagcact tgcgaccccc gatgtggttg aacgctttaa ggcattaaac
    11161 agcaaatcgg ggcagtttgt ggtggaattg ctggcgttct tcgccaaaat gtataaacag
    11221 gctcaaggct ttgatgctcc accggttcac gatgcctgtg cggtggcgta tgtgattgac
    11281 ccaagcctga ttgaagttca gcaagtgccg gtcaatattg agctaacagg cacgcataca
    11341 ctgggtatga cggtggcgga tttccgctac ccgccaaaac agtgtaatac ttgggtagca
    11401 aaaaaattag acaaatcccg cttttgggat ttggtaattg aatcggtgaa aaacctgccg
    11461 taatctaaat aacccgcttg ccggttaagc gttggtatat tccgccttgt tgtctaacca
    11521 acgcttaatt aacgcctctg caagcggttg attttcgcta ataatttgct tggcgtaacg
    11581 ttgcaccagc ggaatcattt tgcggtctcg cattaaatcc gccaccttaa attctgccat
    11641 tccggtctgt tttgtgccga gaatttcgcc tgtgcctcga atctccaaat ctttttcggc
    11701 aatgtagaaa ccgtcttggc tatcacgcat cacttgtaac cgcttgctgg aaattttccc
    11761 gagcggcggt ttgtacatta agacgcaatg cgaggcggtt gcccctcgcc caacacgtcc
    11821 acgcaactgg tggagttgag ccagcccgag tcgttcggaa ttttcgataa tcattaggct
    11881 agcattcggc acgtccactc ccacttcaat tacggtggtc gcaaccagca aatctaaatt
    11941 cgctgcctta aattccgcca taatcgcttg tttttcctgt ggtttcagcc gtccgtgtac
    12001 taacccgatg cgtaaatccg gcaaggctcg ctgtaaatct tcggcaatcg ctgccgcggc
    12061 ttgagcctcc aacacttcgc tttcatcaat cagggtgcag acccaatagg cttggcggtg
    12121 ttcttgctta cagacttggt acacccgttg gacgatttct gctcgccgat cttcagaaat
    12181 caccacagtc gtgattggcg ttctacccgg tggcagttcg tcaatgattg aggtgtcgag
    12241 gtcagcatag accgtcattg ccagcgttct cggaatgggg gtcgccgtca taatgagctg
    12301 atgcggatag ttattttctt tcgctccttt ttcccgcaag gtcagccgtt ggtgtacgcc
    12361 aaaacggtgt tgttcatcaa taatcaccaa cgctaaatgg tgaaattcca cattgtcttg
    12421 gaacagggcg tgagtgccga taatcatctg cacatcaccg tttttgattg cctcaagttg
    12481 tgcggttctc gccttgcctt tcactttacc ggcaagccag ccaacctcaa tcccaaaggg
    12541 attaagccag ttggcaaaat tattggcgtg ctgttcggca agaatttcgg tcggtgccat
    12601 taatgccacc tgcttgccgt tatcaatcgc taatagtgct gccaaggcgg ctactaaggt
    12661 tttacctgaa ccaacatcgc cttgtaccag tcgcatcatc gggtgtggtt tggcaagatc
    12721 ttgctcaata tctgcggtta ctcggctttg tgcgtgagta ggcttaaaag gcaaactgtc
    12781 gagaaaacgc tgttttatat cggtttggta agtaagtgcc tctgcatatt gctgttttac
    12841 ccctaaacgg agttgctgca tcgctaaatt gtgtgccagc agttcttcaa aaatcagccg
    12901 tttttgagca gggtggtcac ctttttccaa gacttcggca gaaatcgtcg gcggtgggcg
    12961 gtgcaataac tgcaacgctt cttttaggct gtatttgtgc ggattgtatt catcaggcaa
    13021 cagctcggcg actttcactt tctctaataa agcgagggct tgctcggtta atttccgcag
    13081 cgaggcttgt tttaacccct cagtggtgga gtaaatcggg gtcagggttt cagccagtac
    13141 aagcggttga ttatcccgaa taatttgata ttcagggtgg tgaatttccg ccataaatcg
    13201 cccacgctta atttccccaa aggcttttac ccgaacgccg gtggcaaggc tatttttcat
    13261 tccagcattg aaattgaaga atttaagcat aattttgctg gtgctgtcgg agagtgtaac
    13321 cgataaaatc gggcgtttac caaactggac ttcggtaagt tgtacatagc cttcaatggt
    13381 ggcaaagctt tccgggcgaa catcagcaat cggggtaata cgggtgcgat cttcataccg
    13441 cattggcaga tgaaacagta aatcctgcac attattaatg ccgattcgac ttaacttttc
    13501 ggaaattgcc gctcctacgc cggaaagggc ggttaatggc acgccgtcta ataattgttc
    13561 actcattatt tatgcggttt caaatgggtt aaataaacgc acatcacaac ggataaaatc
    13621 tttggtgttg cgggtgacta aaatcagatt gtggtatttg gcggttgccg caatataagc
    13681 atcatttaaa tccattttat tgggaatatg gtactctgat gccaatagag caatgtcgtt
    13741 attcaccaca aacgcttttg tttgataagc ctttaataca ttattttcaa accaatcatt
    13801 taatcggtct gattgttctt tgtctttgcg ggctttcagc aaaatacctg ttttgatttc
    13861 agataacgta atacagctga tattggtctg gctaggatta acccctctca gccactggcg
    13921 aacattgaca tccatcttgt catttcttaa cttataaagc tcggaaacta tattggtatc
    13981 aaaaaggtag cgatacatta ctcatctcca aaatcaacag gtcttggttt attgcttttg
    14041 cggatttcaa ccaatgtttg ttcaaactct tgccaaaatt catcgctcac atcctcattt
    14101 tcggaagagg cgaatagctc ttcaaagctt ggctcgctag gctttttctg ctgataatcc
    14161 atataactag acaccacatt gacgattttg ccccatttgg taataaaaac cggctctttt
    14221 tctgccattt ttaacacttt gctggcattt tgattaaatt ctctggaagt aatggttatt
    14281 gccatatcgc tctccaaaat gtagtaaaaa gatgagtgta ttttattaaa tgtagtaata
    14341 tctttcaatt aattcgctat ttggcaacag atattttgca aaaaatcttg aaaatctgac
    14401 cacttgcccc atctattccc tgttttttaa tgaataaagg aatacacaat ggcaaataat
    14461 caagaaaccc gtggcttcca gtcggaagtg aaacagttat tgcaactgat gatccactcg
    14521 ctttactcca acaaagaaat tttcctgcgt gagcttattt ccaacgcctc tgacgccgcc
    14581 gataaattgc ggtttaaagc cctttccgag ccggctttgt atgaaggtga tggcgaactg
    14641 cgtgtgcgtg tctctgttga tgaaacactc ggtacgatta cgattgccga taacggtatc
    14701 ggtatgaccc gtgagcaggt gatcgaccat ctcggtacga ttgcaaaatc tggtaccaaa
    14761 gaatttttga acgcactcgg cactgatcaa gccaaagaca gccagcttat cgggcagttc
    14821 ggcgtgggct tttactcttc tttcatcgtg gcggataaag tgacagtcaa aacccgtgcc
    14881 gccggagtgc ctgccgagca aggcgtgatt tgggaatctg ccggtgaggg cgattacacc
    14941 gttgccgatc tggagaaaaa agagcgtggc acggaaatca ttcttcactt gcgtgaggac
    15001 gaaaaagagt ttttaaacga atggcgtttg cgtgagatta tcggcaaata ctccgaccat
    15061 atcggcctgg cggtggaaat tcagaccaat gaatacgatg acgagggcaa agcaagcggt
    15121 caaaaatggg aaaaaattaa caaagctcaa gcgctttgga cacgctcaaa aaatgagatt
    15181 agtgacgagg agtacaccga attttacaaa cacctcagcc atgattttgc cgacccgctg
    15241 atttggtcgc acaataaagt cgaaggtaag caagaataca ccagcttgct gtatgtgccg
    15301 agcaaagccc cgtgggatct gttccaacgc gagcaaaaac acggcttgaa actctacgtt
    15361 cagcgtgtat ttattatgga cgatgcggaa gtctttatgc cgaactactt gcgttttatg
    15421 cgtggcttgc tcgacaccaa cgacctgccg ctcaacgtca gccgtgaaat tctgcaagag
    15481 aataaagtta cccaatcgct ccgttctgcc ttaaccaagc gtgcgttaca actgctggaa
    15541 aaattggcga aagacgatgc cgaaaaatat gcccaattct ggcaagcgtt cggcgtggtg
    15601 cttaaagagg gcgtgggcga agactttgcc aacaaacaac aggttgcagg cttactccgt
    15661 tttgcctcca cccagcgtga tgacagcgaa caagcggtca gttttgccga ttatattgca
    15721 agaatgaaag aggggcagaa agcgatctac ttcttaaccg cagacagcta ccaagcggct
    15781 aaaaacagcc cgcacttaga gctgttccac aaaaaaggca ttgaggtgct actgctttct
    15841 gaccgcattg atgaatggtt ggttagccac ctcaccgagt ttgacggcaa accgctacaa
    15901 agcattacca agtcggactt agacttaggc gagcttgccg acaagcagga agaagagagc
    15961 caaaaagccc aacaggcgga gtttggttcg ttcttagaac gggcgaaagg ctactttggt
    16021 gaacgggtca aaaacgtggt gctgactcac cgcttaaccg acacaccggc agtggtttcc
    16081 actgacagcg atgaaatgac cacccaaatg gcaaaactgt ttgcagcaat ggggcaacaa
    16141 gcaccagaag tgaaatatac ttttgagctg aacccagatc acccaatggt gaaaaaagta
    16201 gctgatcttg ccgatgaagc cgagttcgcc gattggattg aactgctgtt tgaacaagct
    16261 ctgcttgctg aacgaggcac gttggaaaac ccgacagcct ttattaaacg ggtaaataaa
    16321 ttgttgggct agccattact aaaaacggaa atctaggttt ccgtttttcc atattcaata
    16381 tataatggaa caaaaattaa acaatgtatt cgggggaata atgtttaaag aaaaagatta
    16441 tgatgaatat ttagaggcta aagtaaaaaa aggtcagatt tttactcttg aacaagcaaa
    16501 tgccgaatgg caagagatta ttgagcaaat tgaacgagaa aattaagcat acacagttta
    16561 agaaaatacc cttagttaaa acaaaataac cgcttacaag cggttatttt tttataggat
    16621 tttgcaaaat ttcctgaaaa tttaaccgct ttgttttaaa ataagcagat tttttcaggt
    16681 ttcaaagttt aaaaagaata ggaatagcaa tgcgtacaag tcaatattta ttttcaaccc
    16741 ttaaagaaat gccgaatgat gcacaagtag ttagccatca attaatgttg cgtgccggaa
    16801 tgattcgccc gatggcgtca ggtttataca actggttgcc gaccgggatc aaagtgttga
    16861 aaaaagtgga aaatattatt cgtgaagaga tgaacaaagg cggggctatc gaggtattaa
    16921 tgccggtggt tcagccggcg gaattatggg tggaatccgg tcgttggaat gattacggcc
    16981 cggaattatt acgttttaaa gatcgtggcg agcgtgattt cgtgcttggc ccgactcacg
    17041 aagaagtgat taccgacttg gttcgccgtg aagtttcttc gtacaaacaa cttccgctga
    17101 atttatacca aattcaaacg aaattccgtg atgaagtccg ccctcgtttc ggggtaatgc
    17161 gttcgcgtga atttgtgatg aaagatgcct attctttcca caccacacaa gagagcctgc
    17221 aagaaaccta tgatgtgatg tatcaggttt acagcaatat tttcacccgt ttgggcttag
    17281 atttccgtgc ggtgcaggca gataccggct ctatcggcgg ttcagcctct cacgagttcc
    17341 aagtgttagc ctcaagcggt gaagatgatg tggtattttc aaccgaatca gattttgctg
    17401 ccaatattga attagccgaa gcggttgcgg tgggtgaacg ccaagcacca acggcagaaa
    17461 tgcaattagt ggatacgcca aatgcgaaaa ccatcaatga attagtagaa aatcacggtt
    17521 tagccattga aaaaacggtg aaaaccttag tggtgaaagg ggcaactgaa gagcaaccgt
    17581 taattgcgtt agtgattcgt ggcgaccacg agttaaacga aattaaagct caaaaacacc
    17641 cgttggtggc tgatccgctt gagtttgccg atgaagcgga aattaaagcc aaaatcggtg
    17701 ccggtgttgg ctcgttaggt gtggtgaata tgccgattcc ggtgattatt gaccgctcag
    17761 tggcgttgat gtcagatttt ggctgcggtg cgaatattga tggcaaacac tactttaacg
    17821 tgaactggga gcgtgatgtt gctgtgccgg aaattgcaga tttacgcaat gtggtggaag
    17881 gcgacccaag cccggacggt aaaggcacac ttcaaatcaa acgaggtatt gaagtagggc
    17941 atattttcca attaggcaaa aaatactcag aagcaatgaa agccactgtg caaggtgaag
    18001 acggtaaacc gctagtgatg acaatgggtt gttacggtat cggcgttacc cgtgtggtgg
    18061 cagctgcgat tgaacaacat tatgatgatc gtggtattat ctggccttgt gatgaaatgg
    18121 cgccatttac ggtggcgatt gtgccgatga atatgcacaa atcggaaaaa gtgcaggcat
    18181 tcgctgaaga gttatacgct aacttaaaag ctcaaggcgt tgaggtgatt tttgatgatc
    18241 gtaaagaacg cccgggcgtg atgttcgcgg atatggagct tatcggtgtg ccgcatatgg
    18301 tggttattgg tgagaaaaac ctcgagaacg gcgaaatcga atacaaaaac cgccgcagcg
    18361 gtgaaaaaca gatgatcgcc aaagagagct tacttgcgtt cttaaaagcg aatgtaaagg
    18421 cttaattata aataacaaaa ttgggcgtat aaaatacgcc ctttaatata aagcagcgag
    18481 tatttaacta aagtataaaa tactctatta tttttagaat ataggaaata gaatgcgtg
//
LOCUS       DANLRW010000045        18537 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.045, whole genome shotgun sequence.
ACCESSION   DANLRW010000045 DANLRW010000000
VERSION     DANLRW010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18537
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.045"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..574)
                     /locus_tag="PXA71_001297"
     CDS             complement(<1..574)
                     /locus_tag="PXA71_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105412.1"
                     /translation="MASALGAFLLLLVASSYADFYYTQTKQKEQLYLQAEAHQLLNYF
                     QQHFQHIGYQGSHRTDSNFDLFQQAGKSLNIVHKNCIIGFYDLNQDGCLGKRKTKTAA
                     CKLGTVNNTREVLKEIVGFKVENNEIYTFSSQLDNCVKEQCQTLLENCDGNWSKFTEA
                     NNFKTKKLDFSWRQEDNLLKIELEIESPKQK"
     gene            complement(606..1127)
                     /locus_tag="PXA71_001298"
     CDS             complement(606..1127)
                     /locus_tag="PXA71_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type II secretory pathway, pseudopilin PulG"
                     /protein_id="HDL5105413.1"
                     /translation="MYKAITLIEILTTITIMVIAVYFISPVIFTLQDRIALHSEIENI
                     QSFIQQIQTKARYTKRNYTLTLSQRNNQWCMIAVIKPINTSKQIICDCLNKHFCDLGK
                     EYHLYTPTHQQIVLKNKSLYPKSFINVDGVSGQLESKCIKLSLNKENEILQFEQLGRV
                     YVAAKNKRSTCKD"
     gene            complement(1228..1677)
                     /locus_tag="PXA71_001299"
     CDS             complement(1228..1677)
                     /locus_tag="PXA71_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudoazurin"
                     /protein_id="HDL5105414.1"
                     /translation="MLAKLKWNQLACVTLAFCSASVFSAHHEIKMLDNNAEGSMVFEP
                     GYVKAEVGDTVTFIPSHKGHWVESRSIPEGAEKFLSKEDEEFTITLTHEGVYVYYCPP
                     HRTMNMAGIIQVGQALNLEATQKEVEKIEKRTKENKGRLFEYLEQVK"
     gene            complement(1737..2456)
                     /locus_tag="PXA71_001300"
                     /pseudo
     CDS             complement(1737..2456)
                     /locus_tag="PXA71_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616566.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
     gene            2512..3162
                     /locus_tag="PXA71_001301"
                     /pseudo
     CDS             2512..3162
                     /locus_tag="PXA71_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_021111752.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            3414..4604
                     /locus_tag="PXA71_001302"
     CDS             3414..4604
                     /locus_tag="PXA71_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000616649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDL5105415.1"
                     /translation="MSTSQQLIQQTEHFGANNYLPLPIVISKAKGIWVEDPEGNRYLD
                     MLSAYSAVNQGHCHPKIVQALKDQADKVTLTSRAFYNDQLGIWYEKICKLANKEMALP
                     MNTGAEAVETAIKTARRWGYDVKGIAENQAEIIACVGNFHGRTMAAVSLSSDPDYKRG
                     FGPMLGGIKLVPYGDLEALKAAITPNTAAFLVEPIQGESGILIPPEGFLEQAYELCKE
                     NNVLFIADEIQAGLGRTGKLFATEWEGFEPDIYILGKALGGGVFPISCVLANRDILGV
                     FNPGSHGSTFGGNPLACAVSIASIDVLLEEKLAERSRELGEYFLAELKKIQNPIIKEV
                     RGRGLFIGLELHQPARPFCEKLKEKGLLCKETHDTVIRFAPPLVIEKFNLDWALEKIR
                     EVLA"
     gene            4679..6190
                     /gene="nhaC"
                     /locus_tag="PXA71_001303"
     CDS             4679..6190
                     /gene="nhaC"
                     /locus_tag="PXA71_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDL5105416.1"
                     /translation="MLILQTFSKNQPLVKGGFMSNRTEITDQNIRIPFRYAILPVIIM
                     VSIMAVAIIKFEASPHVPLLIGAISAAVIAMAHGYRWETIEKGIYRGIRMALPAIVII
                     IMIGLTIGAWLGGGIVATMIYYGLKLISPSLFLVTISIICAIVTLAIGSSWSTMGTIG
                     VAAMGIGFSLGIPAPMVAGAVISGAYFGDKMSPLSDTTNLAAGITETNLFEHIRHMFI
                     TTVPAFLIALSVYFYFGMEFRAENLDLAKIEDIMQAMQEHFLISPWLLLVPLLVVVLV
                     AKKVPALPALAAGIILGWLCHVFVQGGDVSVAVITLHDGYKIESGHEMIDKLFNRGGI
                     ESMMYTISLTIVAMTFGGIAEQAGMLHSVVEKILTLAKSAGSLISATIVSAFITNVTT
                     SEQYISILLPGRMYIKAYRDKGLSSRNLSRALEDGGTVTSVLVPWNTCGVYAFSMLQV
                     SAFEYAPYAIMNWLIPLIAIGLATLNIKIERLPPEELAKEPEEITLPKRGCCP"
     gene            6307..9906
                     /gene="putA"
                     /locus_tag="PXA71_001304"
     CDS             6307..9906
                     /gene="putA"
                     /locus_tag="PXA71_001304"
                     /EC_number="1.2.1.88"
                     /EC_number="1.5.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional proline dehydrogenase/L-glutamate
                     gamma-semialdehyde dehydrogenase PutA"
                     /protein_id="HDL5105417.1"
                     /translation="MMSYQLLPNTTIRPELSRHYRFDEQTLVQNLIEQAHCDEQADNI
                     KKLTTQLVGKVRTARQKASGVDALMHEFSLSSQEGVALMCLAEALLRIPDTATADKLI
                     RDKIAKGDWRSHTGNSPSLFVNAAAWGLVITGKLVSTHSESSLSSALSRLIAKGGEPL
                     IRKGVDVAMRMLGKKFVTGETIQQAIKNGEKRFAMGYRYSYDMLGEAALTAEDAKRYY
                     NDYVASIHAVGATSKGLGVYKSSGVSVKLSAIHPRYSLSQHQRVMDELYPRLKELFLL
                     AKKYDIGLNIDAEEADRLELSLDLMDRLLADPDLAGFNGIGFVVQAYQKRCPYVIEHL
                     IETARKHNRQLMIRLVKGAYWDTEIKRAQMDGAEGYPVFSRKVHTDLNYIVCAKKLLA
                     AQDVIYPQFATHNAQTLATIYHLAQGKRFEFQCLHGMGESLYDQVVGSDNLNVQCRIY
                     APVGTYQTLLAYLVRRLLENGANSSFVSQIVDENLSVDDLAQAPVQKAELTNGTMHPK
                     IPLPVDLFDDNRVNSKGYDLTDAVSLQNLENALNELTKQHYRAEPQLANDNTSGQESR
                     KIYNPANQAELVGEVIDATENDMEQAFESAAAFQSEWANTSPAVRAECLEKMADLMEA
                     NMPQLFDLAVREAGKTLNNAIAEVREAVDFCRYYAKEVRNNIEAYKNPRGIVVAISPW
                     NFPLAIFVGEVSSALVAGNVVLAKPAEQTSLMAHYAVSLFYQAGVPKAALQCLPGRGK
                     TVGVALVADHRVNGVIFTGSTETAKNINRNLHKNEKIIPLIAETGGQNAMIVDSSALG
                     EQVVIDVLNSAFDSAGQRCSALRVLYLQRDVADHILTMLKGAMAELKVGLPQHLTTDV
                     GPVIDKVAQQRLLDHIENLKKSAKSYYQVAISSEIAENGIFVPPTLLEIDHISQLKHE
                     VFGPVLHVIRFDADKLDQVIADINSTGFGLTSGLHSRIDETVDLWLKSVHAGNLYVNR
                     NTVGAVVGVQPFGGMGLSGTGPKAGGPLYLQRLVNRQEWTLNGLQGNAQAVDFDLNFA
                     IRKVLSGAEQQTALDLAKSLARRSPLGKTYPMQGITGEKNEMIFVARPQIGISKGNLA
                     SQVQALIAIVTVGSQAVAEKSSELAKHASAFGKKLQVVDDFNSLDHLSTLIVLDLLSS
                     EEKLHHAERKGAILTYIEGLDLALSLLPLVHEKAISINTAAAGGNASLMSEMD"
     gene            10015..10665
                     /locus_tag="PXA71_001305"
     CDS             10015..10665
                     /locus_tag="PXA71_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha3 family transposase"
                     /protein_id="HDL5105418.1"
                     /translation="MRKSRLSQYKQHKLIELFVAGVIARTAAELVNVNKTTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEIDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQSATLLPIIREKVKPDSLVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFWSQAKRHLRKFNGIPKAHFELYLKECEWRFNHSDLKSQIFLLKQLVKGGLG"
     gene            complement(10666..11553)
                     /locus_tag="PXA71_001306"
     CDS             complement(10666..11553)
                     /locus_tag="PXA71_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide transport protein"
                     /protein_id="HDL5105419.1"
                     /translation="MNKLTQLALISLAFTGSAFAAPKSFTYCLESSPAALNPQIATDG
                     ATLDVGQAIYNRLIDFEKGTTNLTPSLAERWEISEGGKIYTFFLRQNVQFQSNKSFTP
                     SRYFNADDVIFSINRQFDKTNPYHKLSGGNYEFFYGMNMQNIIKNVTKVDDYTVKIEL
                     SEPNAPFLANLAMDFMAIFSAEYANKMQIAGTPEKLDLEPIGTGAFQFYGYQKDAAVR
                     FTAFEHYWEGKAKIDRLVFSITPDASVRLAKLEKNECQAMPYPNPSDLSALKANKDIQ
                     LFEKSGLNIGYITFRGCPR"
     misc_feature    complement(11579..11724)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            complement(11901..12911)
                     /gene="mglC"
                     /locus_tag="PXA71_001307"
     CDS             complement(11901..12911)
                     /gene="mglC"
                     /locus_tag="PXA71_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HDL5105420.1"
                     /translation="MSALQQNRTLDFFKQNAIYFVLLILLIVIIVQDPSFLSLRNFSN
                     ILSQSSVRLIIALGVAGLIVTQGTDLSAGRQVGLAAVISATLLQSMENMNKVFPNLSE
                     IPIPVVVLTVCAIGAVIGLFNGFVVAYLNVTPFIATMGTMIIVYGINSLYYDAVGSSP
                     IAGFSDDFSTFAQGFFRFGDFRLSYITIYAVIATIIMWTLWNKTRFGKNVFAIGGNPE
                     AARVSGVNVPLNLMGIYMLSGIFYAFGGMLEAGRIGSATNNLGFMYEMDAIAACVVGG
                     VSFAGGVGTIIGVVTGVLIFTVINYGLTYIGVNPYWQYIIKGGIIILAVAIDSLKYAK
                     KK"
     gene            complement(12925..14424)
                     /gene="mglA"
                     /locus_tag="PXA71_001308"
     CDS             complement(12925..14424)
                     /gene="mglA"
                     /locus_tag="PXA71_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     ATP-binding protein MglA"
                     /protein_id="HDL5105421.1"
                     /translation="MTGEVLLTMTNVSKSFPGVKALDNANLTVKSHSVHALMGENGAG
                     KSTLLKCLFGIYAKDEGDILFLGKPVNFKTSKEALENGISMVHQELNLVKQVTVMDNL
                     WLGRYPLKGPFVDHDKMYRDTKAIFDELDIDVDPRDKVAKLSVSQMQMIEIAKAFSYN
                     AKIVIMDEPTSSLSEKEVEHLFKIIQKLKDRGCGIIYISHKMDEIFKICDEITILRDG
                     KWVNTVAIKDTSMDQVVSMMVGRELTQRFPEKTNLPKEVILEVEHLTAKNQPSIQDVS
                     FSLRRGEILGIAGLVGAKRTDIVETIFGVREKAGGTIRLNDKEINNRNAFDAINNGFA
                     LVTEERRSTGIYANLSIEFNSLISNMKSYLGKFGLLSNKKMKSDTQWVIDSMNVKTPS
                     HQTHIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDIGAKFEIYQLILELANKDK
                     GIIMISSEMPELLGVTDRILVMSNGKVAGIVETAHTSQEEILQLAAKYL"
     gene            complement(14496..15485)
                     /gene="mglB"
                     /locus_tag="PXA71_001309"
     CDS             complement(14496..15485)
                     /gene="mglB"
                     /locus_tag="PXA71_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL5105422.1"
                     /translation="MKKAVLSAVAMAVALGATISTAQAENRIGVTIYKYDDNFMALMR
                     KEIEKEGKTQKVELLMNDSQNTQSIQNDQVDVLLSKGVKALAINLVDPSAYKTIIQKA
                     KSEDVPVVFFNKDPGAAAIDSYPKAYYVGTEPKESGIIQGELIAKQWKAHPELDLNKD
                     GKIQFALLKGEPGHPDAEARTKYVVESLKAQGIDSEQIFMDAALWDAAQAKDKVDAWL
                     SSGKAKDIEVIISNNDGMALGALEATKAHGRKLPIFGVDALPEALQLIKKGELAGTVL
                     NDGVNQGKAVVQLSANLADGKDAVAGTQWKLENRVVRIPYVGVDKDNLSEFLK"
     gene            complement(15760..16752)
                     /gene="mglB"
                     /locus_tag="PXA71_001310"
     CDS             complement(15760..16752)
                     /gene="mglB"
                     /locus_tag="PXA71_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HDL5105423.1"
                     /translation="MKRTILSAFALSVICGVNLSYAQSESRVGVTIYKYDDHFMTQMR
                     KDMQNEAKGFAGLKWFMNDAQNSQVKQLAQIETLLQHKMRVLAVNIVNANESKTIVEK
                     AKAYNVPVVFFNRTPSKQALESYEKAYFVSADPKEAGRIQGELIAKVWKSNPDFDLNK
                     DGKLQFVLLKGEPSDVSAERSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWL
                     VENRAAEIEVVISNNDEMAIGALDALNAHEKRLPIFGIDALPETLALMKKGEIAGTVL
                     NDSSAQAKAVVKLVSNLAQGKPALKDTQWESHSSKTIYLPHIGIDKENLGQFLP"
     gene            complement(16837..17250)
                     /locus_tag="PXA71_001311"
     CDS             complement(16837..17250)
                     /locus_tag="PXA71_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PACE efflux transporter"
                     /protein_id="HDL5105424.1"
                     /translation="MTAWERVFHALLFECFAIIFTVILTSWLTSHRMVDLTAVIVMIS
                     VIAMVWNVIFNWGFDKVFTGERVQRGLGIRILHSFLFEGGLLVFTIPLVMYMLDIGWW
                     QAFVMDIGMTLFVLVYSVVFNWVYDHLRLRWVKSG"
     gene            17370..17657
                     /locus_tag="PXA71_001312"
     CDS             17370..17657
                     /locus_tag="PXA71_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5105425.1"
                     /translation="MKNDKPIECEGCNTFDVGSILDNSETVATIQRTYESENEAKAAL
                     EKFTQKARDVESEPCEISSEITPIESGFELVAHFKFSCQAEVVIFQLGTRF"
     gene            complement(17703..18509)
                     /locus_tag="PXA71_001313"
     CDS             complement(17703..18509)
                     /locus_tag="PXA71_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HDL5105426.1"
                     /translation="MALAADLGYQTQVETLIKSLCYHHSHLKIYLFQKTFPNEWFDIW
                     CQKLALLSSEIIPVKVCVDFSKYKSLEHINETGFYRYLIPYLDEERVLYLDSDIVVDD
                     NLSEMYWLNFNGIPLYAVEDYVHNHIPAYLDLDLSPYFNSGVLLINNILWKKYSVCDE
                     LVTINEKIVNLTYGDQDALNIYFKGGWGALPIEYNYQVDAILELVLRREQEELARKNG
                     YLDVIPKIIHYTSKFKPWKKELHTMQISTRKKYWFYYHLEWNDILEQHQK"
BASE COUNT         5474 a         3870 c         3663 g         5530 t
ORIGIN      
        1 ctttttgttt aggtgattct atttctaact caatttttaa taagttatct tcctgtctcc
       61 aactaaaatc cagtttctta gttttgaaat tatttgcttc ggtaaattta ctccaatttc
      121 catcgcaatt ttccaataat gtttggcatt gttctttcac acaattatct aattgcgatg
      181 aaaaagtata aatttcatta ttttctactt taaagccaac aatttctttt aacacctctc
      241 tggtattatt cactgttcct aacttacaag cggccgtttt tgtcttacgt tttcccaaac
      301 agccatcttg gtttaaatcg taaaatccaa taatgcaatt tttatgcaca atattcaggc
      361 ttttccctgc ttgctgaaat aaatcaaaat tactgtctgt tctgtgagag ccttgatagc
      421 caatgtgttg aaaatgctgt tggaagtagt ttagtaactg gtgagcttct gcttgcaagt
      481 agagctgttc tttttgtttg gtttgtgtgt aatagaaatc ggcataactt gaagcaacaa
      541 gcaataataa aaacgcccct aatgcactag ccattaatac ttcaattagg ctaaaagcag
      601 ataaactaat ctttgcaggt gctacgttta ttttttgctg ccacataaac ccgtcctaat
      661 tgttcaaatt gcaaaatttc attttcttta tttaaactga gcttaataca ttttgattct
      721 aattgaccac ttaccccatc aacattaata aaggatttcg gatataaact tttatttttt
      781 aatacaatct gctgatgagt cggcgtataa agatgatatt cttttcctaa atcacaaaaa
      841 tgtttattca aacaatcaca aataatttgt ttgctagtat tgattggctt aattaccgca
      901 atcatacacc actgattatt ccgctgagaa agggttaagg tataattacg tttggtataa
      961 cgtgctttag tttggatttg ctgaataaaa gattggatat tttcaatttc actatgaagt
     1021 gcaattcgat cttgcagtgt aaaaataacc ggcgagataa aataaacagc gatcaccata
     1081 atagtgatag tggttagtat ttcaattaat gtgatggctt tatacataaa aataccctca
     1141 ttgatagagg gtatcttaga atttaagcat catttgtaaa ctattaaata ttgatttttc
     1201 gatgcagatc gcaaaattaa atcacttcta cttaacttgc tctaaatatt caaataaacg
     1261 tcctttattt tctttcgtgc gtttttcaat tttttccact tctttttgtg tggcttcaag
     1321 attgagagct tgtcctactt ggataattcc ggccatattc atggttcggt gtggcggaca
     1381 gtagtaaaca taaacacctt cgtgagtaag ggtaatagta aattcctcat cttctttaga
     1441 taagaacttc tccgcacctt ccggaatcga gcggctttca acccaatgcc ctttatgaga
     1501 cggaataaat gttaccgtat cgcccacctc tgcttttaca taaccgggct caaataccat
     1561 tgatccttcc gcattgttat ctaacatttt gatttcgtga tgggctgaaa atactgaggc
     1621 tgaacaaaat gccaatgtta cacaagctaa ttgattccac ttaagtttcg ctaacatata
     1681 tttattgctc ctaaatttat gaggcacaaa atgagttcaa ttcattatac cttaggttat
     1741 tccagctcaa caccataaaa attatgagca ataaacgggc tgacaacata gccttttacc
     1801 tctttcctta ccggaaaata caccgttgaa tgtgcaatcg gtaaccaagg tgcttgctca
     1861 ttaaagatga attgcgcttt tttatataaa tctgaccgct tgttttgatc actgatagtc
     1921 gcagcctcat taattaaacg gtcaaactct ggattacaaa accctgcata gtttgagcct
     1981 tgttctaccg cattacaact gagtagggca ttgaggaaat tatctggatc gccgttatct
     2041 ccggtccaac caatcattcc ggtagcgtgc tcgccgtttc ccattcgttt aagatattct
     2101 ccccattcat agctcactat ctttgcctct acccctattg ctttccaatc ctcttgaatc
     2161 atttcagcca ttctacgggc atttggattg taagggcgag aaacaggcat tgcccaaatt
     2221 tctgtttcaa agccattttc taatccggcc tctttaagca agctcttcgc cttttccgga
     2281 ttaaattcat aaccggctac ttcgttgtta tatccccaaa tcgtagaagg cattgggttt
     2341 ttagctggcg ttgcagagcc ttggtaaacg gaagttaaaa tttcagtttt attcaccgca
     2401 taattcaatg cttgacgaac tttagggtta tcaaaagggg gcttacgagt attaaaagta
     2461 ggggctgtcc tagataacga ctaaaacttc catttaggtt aagataaccc aatgagaaaa
     2521 agtcgtctaa gtcagtacaa acaacataaa ctcattgaac tgtttgtagc aggtgtcact
     2581 gctcgaacag cggctgagtt ggtgaatgta aacaaaacca ccgctgccta ttactttcac
     2641 cgtttgcgat tgctcatcta tcaacatagc cctcatctgg aaatgtttga gggtgaaatt
     2701 gaagcggacg aaagttattt cggtggtgct cgcaaaggta aacgagggtg tggtgccgca
     2761 ggcaaaactg ccgtatttgg gctgttaaaa cgtgatgaca aggtttatac cgttgtcgta
     2821 ccaaatacgc aatctgccac acttttgccg attattcggg agaaagtgaa gccagacagc
     2881 cttgtttacg ccgattttta tcgaagctat gatgtgcttg atgtgagtga atttaaccat
     2941 tttcgtatca atcacagcac acacttcgct gaaaatcaca atcacattaa cagaattgag
     3001 aatttttgga gccaagcaaa acgccatttg cgtaaattta acggcatacc taaagctcat
     3061 tttgagctgt atttgaagga atgcgaatag cgttttaatc acagtgactt aaaatctcaa
     3121 atttccattt taaaacaatt ggttaggggt tgtttaagtt agttatctag gacagcccta
     3181 aattttgtag ttggaatttc aacggagaaa gttatctata aacttacaaa agttatagaa
     3241 aatggaggca tttttgctta aagtatgcta tctattcata ttaattgcat agttaatcaa
     3301 caactgaaga aaaattagaa gtagatcata aaatcaacaa aaagtccgtg ctttttagct
     3361 aaagattgtt aaactctttt gtgttacaag tttttaacat aaaggagttt tttatgtcta
     3421 cttctcaaca actcatccaa caaaccgaac atttcggtgc caataactac ctacctctac
     3481 ctattgttat tagtaaagct aaaggcattt gggttgaaga tcctgagggt aatcgctatt
     3541 tggatatgct tagtgcctac tcagcggtta atcaagggca ttgtcatcca aaaattgtac
     3601 aggcactaaa agatcaagca gacaaagtaa cgctgacctc tcgagcattt tataacgatc
     3661 aacttggtat ttggtatgaa aaaatctgca aactcgctaa taaagagatg gcattaccga
     3721 tgaatacggg tgcagaagcg gtagaaacag cgattaaaac tgctcgccgt tggggttatg
     3781 atgtgaaagg aattgcagaa aatcaagcag aaatcatcgc ttgtgttggc aattttcacg
     3841 gacgaacaat ggctgcagta tctctctcgt ctgatccgga ttataaacgt ggtttcgggc
     3901 cgatgttagg tggcatcaaa cttgttccat acggtgattt agaagcatta aaagctgcga
     3961 ttacaccaaa cacagcagcg tttttggttg agccaatcca aggtgaatct ggcattctta
     4021 ttccacctga aggtttcttg gaacaggctt atgaactatg caaagagaat aatgtgctgt
     4081 ttattgctga tgaaattcag gcaggtcttg ggcgtactgg caagttattt gcaacagaat
     4141 gggaaggctt tgagccagat atttatattc taggtaaagc acttggtggc ggggtgttcc
     4201 caatctcttg tgtgttagca aatcgtgata ttttaggcgt attcaatcct ggctcgcacg
     4261 gttcgacatt tggtggtaat ccattagcct gtgcggtatc tattgcctca attgatgtac
     4321 tgttggaaga aaaacttgca gagcgttccc gtgagttagg tgaatacttc ttggcagagc
     4381 tgaaaaaaat ccaaaatcca attattaaag aagttcgtgg acgtggactg tttattggct
     4441 tggagttaca tcaaccagca cgcccattct gcgaaaaact caaagaaaaa ggcttactct
     4501 gcaaagagac ccacgataca gttatccgct ttgctccccc tttggtgatt gaaaaattca
     4561 atttggattg ggcattggag aaaattcggg aggtgttggc ttaattgtca ttttctctat
     4621 attttatcct gccaaatcgc ctttaaccct ttttggcagg aagcaaaaca gttgtaaaat
     4681 gctgattttg caaacttttt ccaaaaatca accgcttgta aaaggtggct ttatgtcaaa
     4741 cagaacagaa ataacagacc aaaatatccg aatcccgttt cgctatgcta tattgcctgt
     4801 gattattatg gtatcgatta tggcggtggc tatcatcaaa tttgaagcct cacctcacgt
     4861 tccgttgctt attggggcaa ttagtgccgc tgtgattgca atggcacatg gctaccgttg
     4921 ggagacaatt gaaaaaggaa tttatagagg cattcgtatg gctttaccag cgattgttat
     4981 cattattatg attgggctaa ccatcggagc ttggctaggt ggtggaattg tagctacgat
     5041 gatttactac ggcttgaaat tgatctctcc gtcgctgttt ttagtaacta tctcaataat
     5101 ttgtgctatt gtgacccttg cgattggtag ctcgtggtct acaatgggaa caatcggtgt
     5161 agcggcgatg gggatcgggt ttagtctcgg cattccggca ccgatggttg ccggtgcggt
     5221 gatctcagga gcatatttcg gcgataaaat gtcgccactg tcagacacta ccaatctggc
     5281 agcagggatt accgaaacca atctgtttga acatatccgc catatgttta tcactaccgt
     5341 gccggcgttc ctgattgcgt tatctgtcta tttctatttt ggtatggaat ttagagccga
     5401 aaatctcgat cttgctaaaa ttgaagacat tatgcaggca atgcaggaac atttcttgat
     5461 ttcgccttgg ttgctattag tgcctttatt agtcgtggtg ttggtggcaa aaaaagtgcc
     5521 tgccttaccg gcattagctg cagggataat tcttggttgg ctctgccacg tttttgtgca
     5581 aggcggtgat gtcagcgtag cagtgattac tctgcacgac ggctataaaa ttgagagcgg
     5641 ccacgagatg attgataagc tgttcaaccg tggtgggatc gagtcgatga tgtacaccat
     5701 ttcccttacg attgttgcga tgacttttgg tggcattgca gagcaagctg gaatgttaca
     5761 ttcagtagtg gaaaaaatcc ttacccttgc aaaatcagca ggtagcttaa ttagtgctac
     5821 gattgtatcg gcatttatta ccaacgtaac gacatctgag caatatattt ctattttatt
     5881 accaggcaga atgtatataa aagcctatag ggataaggga ctaagttcga gaaacctttc
     5941 tcgtgcattg gaagacggag gaacagttac ttcggttctt gtaccttgga atacctgtgg
     6001 tgtttatgcg ttctcaatgt tgcaagtgag tgcttttgaa tatgcaccgt atgcaataat
     6061 gaattggctc attccactga ttgcgattgg cttggcaacc ttgaatatca aaattgagcg
     6121 attgccaccg gaagaattag ccaaagaacc tgaggaaatt actctgccaa aacgtggttg
     6181 ttgtccataa tttatctaaa tagtatttaa taacaatagg ttaagttaaa taacaagcgg
     6241 tcggttttat cttaaaattt gcaagtttat acataaattt gatcgcttgc tgtatagaaa
     6301 ggaaaaatga tgtcatacca acttttacct aacaccacta tccgtcctga attgagccgt
     6361 cattaccgct ttgatgagca aaccctggtg caaaatctga tagaacaagc acattgtgat
     6421 gaacaggctg ataacattaa aaagctcact acccaattag tcggtaaagt ccgaactgca
     6481 cgccagaaag caagcggggt tgatgcgtta atgcacgaat tttcactctc cagccaagag
     6541 ggggtggcgt tgatgtgcct tgccgaagca ttactacgca ttcctgacac cgccactgcg
     6601 gataaattaa ttcgagacaa aattgccaaa ggggattggc gttcacacac cggcaacagc
     6661 ccctctctgt ttgtgaatgc agcggcgtgg ggcttggtga ttaccggcaa attggtttca
     6721 acccacagcg aaagctcact ctcatcagca ctttcacgcc tgatcgccaa aggcggagaa
     6781 ccgctgatcc gcaaaggtgt ggacgtagca atgcgtatgc tcggcaagaa atttgtaacg
     6841 ggcgaaacca ttcaacaggc gattaaaaac ggcgaaaaac gcttcgcaat gggttatcgt
     6901 tacagctacg atatgctggg cgaagcggca ctcaccgccg aagatgccaa acgctattac
     6961 aacgactatg ttgcctctat tcacgctgtg ggtgccacct cgaaaggctt gggcgtgtat
     7021 aaatcctcgg gtgtgtcggt caaactctcc gccattcacc ctcgttattc cctttcccaa
     7081 caccaacgtg tgatggacga actctatcca cgtctgaaag aactgttctt gctggcgaaa
     7141 aagtatgaca tcggcttgaa cattgatgcc gaagaagccg accgcctcga attgtcgctt
     7201 gatttgatgg acagactgct tgccgaccct gatttggcag ggtttaacgg cattggtttt
     7261 gtggtgcagg cgtaccaaaa acgttgcccg tatgtgatcg agcatttaat tgagaccgcc
     7321 cgtaaacata atcgccagct aatgattcgc ttggtaaaag gcgcatattg ggacactgaa
     7381 atcaagcggg cgcaaatgga cggtgcagag ggctatccgg tcttctcccg taaggtgcat
     7441 accgatttga actacatcgt ttgtgccaaa aaattgctgg cggcgcaaga tgtgatctat
     7501 ccgcaatttg ccacccacaa cgctcaaact ctcgccacca tttaccactt ggcacagggc
     7561 aaacgttttg agtttcaatg cttgcacggt atgggagaga gcttgtacga ccaagtggtt
     7621 ggcagcgata atcttaacgt gcaatgtcgc atttatgccc ctgtcggtac ttatcaaacc
     7681 ctgcttgcct atttagtacg tcgcttgttg gaaaacggag cgaacagctc atttgttagc
     7741 caaattgtgg atgaaaatct cagtgtagat gatctggctc aagcccctgt tcaaaaagca
     7801 gaactgacca atggcactat gcacccgaaa attccattgc cagtcgattt atttgacgac
     7861 aatcgtgtta attccaaagg ctatgattta actgatgcag taagcctaca aaatttagaa
     7921 aatgccctca atgaacttac caaacagcat taccgtgctg aaccacagct ggcaaatgat
     7981 aatacaagcg gtcaagaaag ccgaaaaatt tacaatccag cgaaccaagc tgaattagtc
     8041 ggcgaagtga ttgatgccac cgaaaacgat atggaacagg cgtttgaaag tgcggcggcg
     8101 ttccaaagtg aatgggcgaa tacttcccct gcggtgcgtg ccgagtgctt agaaaaaatg
     8161 gcggacttga tggaagccaa tatgccacaa ctgttcgatt tggcggtgcg tgaggcaggc
     8221 aaaacgctca acaatgcaat tgctgaagtg cgtgaagccg tcgatttctg tcgttattat
     8281 gccaaagagg tacgcaacaa cattgaagca tacaaaaatc cgcgtggcat tgtagtagca
     8341 attagcccgt ggaactttcc gttagcgatt tttgtgggtg aagtttcatc tgcgttggtg
     8401 gcaggcaatg tggtactagc aaaaccagct gaacaaactt cgttaatggc acattatgct
     8461 gtcagccttt tctaccaagc aggtgtgccg aaagcggcgt tgcaatgctt accgggtaga
     8521 ggaaaaacgg ttggggtggc gttggtggca gatcatcgtg tgaacggcgt gatttttact
     8581 ggttcaacag agacagctaa aaacattaac cgcaatttgc acaaaaacga gaaaattata
     8641 ccgcttattg ccgaaactgg cggacaaaat gcaatgattg ttgatagctc ggcactgggc
     8701 gagcaggttg tgatagatgt tttaaactcc gcatttgact cagcagggca acgttgttcg
     8761 gcattgcgtg tgctgtatct gcaacgtgat gttgccgatc acattctcac aatgctcaaa
     8821 ggagcaatgg cggagttgaa agttggtctt ccacaacact taactaccga tgtcggacca
     8881 gtaatcgata aagtcgcaca acaacgcttg ctcgatcata ttgaaaatct caaaaaatcg
     8941 gcgaaaagtt actatcaggt ggctatctcc tctgaaattg ccgaaaatgg tattttcgta
     9001 ccgccaacgc tgttagaaat agatcatatc agccagctta aacacgaagt attcggaccg
     9061 gtgctacacg ttatccgttt tgatgcggat aaactcgacc aagtgattgc cgacataaac
     9121 tccacaggtt tcggtctaac cagcggtttg catagccgaa ttgatgaaac ggtggattta
     9181 tggttgaaat ctgtccacgc tggaaatctg tatgtaaacc gtaacacggt aggggctgtg
     9241 gtcggcgtac agccattcgg tggaatgggg ttatcaggaa ctgggccgaa agctggcggg
     9301 ccgctctatc tacaacgttt agtaaaccgc caagaatgga cattgaacgg tttacagggc
     9361 aatgcacaag cggtcgattt tgacttaaat tttgcaatcc gcaaggttct aagtggagct
     9421 gagcagcaaa cggcgttaga tctggccaaa agccttgcac gccgctcgcc actcggaaaa
     9481 acctacccaa tgcagggtat taccggcgag aaaaacgaga tgattttcgt ggctcgccca
     9541 cagattggga ttagcaaagg taatttggct tcacaggtgc aagccttgat tgccattgta
     9601 acggtcggca gccaagcggt ggcagaaaaa tcaagcgagc tggcaaaaca cgcctctgcc
     9661 tttggtaaga aattacaggt ggtggatgat ttcaacagtc tcgatcacct cagcacactc
     9721 attgtgcttg acctgctttc tagtgaggaa aaattgcatc atgccgaacg caaaggggcg
     9781 attttgacct acatcgaagg gctggattta gcgctctcac tgctgccgtt ggtacacgag
     9841 aaagcaatca gcatcaacac cgctgccgca gggggaaatg ccagcttaat gagtgaaatg
     9901 gattaagcaa caaacaaaag agtataagag ggcagatcac aatgatctgc ctttttattt
     9961 taaggggctg tcctagataa cgactaaaac ttccatttag gttaagataa ccctatgaga
    10021 aaaagtcgtc taagtcagta caaacaacat aaactcatag agctgtttgt agcaggcgta
    10081 atcgctcgaa cagccgcaga gttagtgaat gtaaataaaa ccaccgcagc ctattatttt
    10141 caccgtttgc gattgctcat ctatcaacat agccctcatt tggaaatgtt tgagggagaa
    10201 attgagattg atgagagcta tttcggcggt catcgcaagg gtaaacgagg tcgtggtgca
    10261 gcaggcaaaa ccgccgtatt cgggctttta aagcgtgacg gcaaggttta taccgtagta
    10321 gtgccgaaca cacaatctgc tacacttttg ccgattattc gggaaaaggt gaagcccgat
    10381 agccttgttt acaccgattt ttatcgaagc tatgatgtgc ttgatgtgag tgaatttaac
    10441 cattttcgta tcaatcacag cacacacttc gcagaaaatc aaaatcacat taacggaatt
    10501 gagaattttt ggagtcaagc aaaacgtcat ttacgcaagt ttaatggtat tccgaaagcc
    10561 cattttgagc tatatttgaa agaatgcgaa tggcgtttta atcacagtga cttaaaatct
    10621 caaatattcc ttttaaaaca attggttaaa ggggggttag gttagttatc taggacagcc
    10681 cctaaaagta atataaccga tatttaggcc tgacttttca aataattgaa tatctttatt
    10741 cgcttttaaa gcagacaaat ctgacgggtt cggataaggc atcgcttggc attcgttctt
    10801 ctccaattta gctaaacgta ctgaggcatc gggcgtaata ctaaatacaa ggcgatctat
    10861 cttcgctttt ccttcccaat agtgttcaaa tgctgtaaat cttaccgctg cgtccttttg
    10921 gtaaccatag aactggaatg cacctgtgcc tataggttct aaatctaatt tttccggcgt
    10981 acccgctatt tgcattttat ttgcatattc cgcagaaaag atcgccataa aatccatagc
    11041 taaattagca agaaaggggg cattcggttc agataattcg atttttaccg tgtaatcatc
    11101 tacttttgtt acatttttga tgatgttttg catattcatt ccgtagaaaa actcatagtt
    11161 accgccggac aatttgtgat atggattcgt cttatcaaac tgacggttaa tcgaaaaaat
    11221 aacatcatca gcattaaaat aacgactagg ggtaaaactt ttattactct ggaactgcac
    11281 attctgacgc aagaaaaaag tataaatttt tccgccttca ctgatttccc atcgctctgc
    11341 cagagaagga gtgaggttag tggtaccttt ttcaaaatca atcaggcgat tatagattgc
    11401 ttgcccgaca tcaagagtag ctccatctgt tgcaatctga ggattcaatg ctgccggaga
    11461 tgattccaaa cagtaagtaa aagatttagg tgctgcgaaa gcagaacctg taaatgctaa
    11521 agaaataagt gcaagttgtg tcagcttgtt cattgtcata tccttaaatg ttaagcaata
    11581 aaaaaccctt tcaaaagttg ccttccgaaa gggttagaat tgggtttgcg attttggatt
    11641 gcgtttgcca tttcaggttt tcggaagata tcttccgaac acgccaaatg cccgaaagat
    11701 taatcggtca aatggtagtg atgatgttta acgcaatagc tcataatatt ctccaaaatt
    11761 gaatgtttag gaatttacgc tttttaaaaa tcaattgcaa acgttttctt taaaattttg
    11821 taaaaaattc aacatttttc accgcttgta tcgtacctag gagcaaatgg cgatttgctc
    11881 ctaggtttcc aagcaatagg ctattttttc ttcgcatatt taagtgagtc aatcgctacc
    11941 gccaagataa tgatgccacc tttaataata tattgccagt aagggtttac tccaatatag
    12001 gttaagccgt agttgataac ggtgaagatt aacacccctg ttactacacc gatgatagta
    12061 cccacaccac cggcaaagga taccccacct accacacaag cggcaatggc atccatttca
    12121 tacataaagc ctaagttgtt ggttgcacta ccgatacgac ctgcttctaa cataccgccg
    12181 aaggcataga agatgcctga aagcatataa atacccatca ggttaagcgg tacgtttaca
    12241 ccggaaactc gtgctgcttc agggttgccg ccaatagcaa atacgttttt accgaagcgg
    12301 gttttattcc ataacgtcca cataataatg gtagcaatca cggcataaat agtgatgtag
    12361 gatagcctaa agtcgccaaa gcggaagaag ccttgtgcaa aggttgagaa atcatcgcta
    12421 aagcctgcaa ttggcgatga gcctactgca tcgtagtaaa gcgagttgat accatacaca
    12481 ataatcattg ttcccatcgt ggcaataaac ggtgttacgt tgaggtaagc caccacaaag
    12541 ccgttaaata aaccaatgac agcaccgatg gcacacacgg ttaatacaac cacaggaatc
    12601 gggatttccg agaggtttgg gaataccttg ttcatatttt ccattgattg gagcaaggtg
    12661 gcggaaatta ccgctgccaa gcccacttgg cgaccggcag ataagtctgt cccttgtgtt
    12721 acaatcaagc ctgcaacccc taatgcaata atcaaacgca cagaagattg cgataaaatg
    12781 ttactgaagt tacgcaagct caagaaactt gggtcttgca caataatcac aataagtaag
    12841 attaataata cgaagtaaat cgcattttgt ttaaaaaaat cgagtgttct attttgttgt
    12901 aaagcagaca tacttcactc cttgttataa atattttgct gcgagttgca agatttcttc
    12961 ttgcgaggtg tgagcggttt cgacaatacc tgcaactttc ccgttactca tcactaaaat
    13021 tcggtctgtg accccaagca attccggcat ttccgatgaa atcataatga tgcctttatc
    13081 tttattcgcc agctctaaaa tcaactggta aatttcaaat tttgccccga tatcgatacc
    13141 acgggtcggc tcgtcaagca tcaagatttc aggctgggtt aacaaccaac gcccgataat
    13201 cactttttgt tggttaccgc cggaaagtga gccaatatgc gtttgatgcg atggggtttt
    13261 tacattcatc gaatcaatta cccattgggt atcgcttttc atttttttat tgctcagtaa
    13321 gccgaacttg cctagataag acttcatatt tgaaatcaga gagttaaact caatgcttaa
    13381 gttggcataa atccctgttg aacggcgttc ttctgtaacc aatgcaaagc cgttattaat
    13441 cgcatcaaaa gcgttgcggt tattgatttc tttatcgttt agtcggatag tgccgcctgc
    13501 tttctcccgt acaccgaaaa tggtttcaac aatatcagtc cgttttgctc caactaagcc
    13561 ggcgatgcct aaaatttccc ctctgcgtaa gctaaagctg acatcttgaa tagagggttg
    13621 attttttgcc gttaaatgct caacttcaag aatcacttct ttcggcagat tggttttttc
    13681 agggaaacgc tgggtcagct cacgccctac catcattgaa accacttgat ccattgaggt
    13741 atctttaatt gcaacggtgt ttacccattt accgtcacgc aaaatggtaa tttcatcaca
    13801 aattttaaaa atttcgtcca ttttgtgtga aatatagata atgccacagc ctctgtcttt
    13861 cagtttttgg ataattttaa ataaatgctc gacttctttt tctgaaagtg acgaagttgg
    13921 ttcgtccata atcacaattt tggcattgta agagaaagct tttgcaatct cgatcatctg
    13981 catttgtgaa accgataatt tggctacttt atcacgtgga tcaacatcaa tatctaattc
    14041 atcaaaaatc gccttagtat cacgatacat tttatcgtga tctacaaaag gcccttttag
    14101 tgggtaacga cctagccata agttatccat taccgtcact tgttttacta ggttcaactc
    14161 ttggtgaacc attgagatcc cattttctaa cgcctctttt gaggtcttaa aattcaccgg
    14221 cttgccaaga aagagaatat ctccctcatc tttagcataa atcccaaata agcatttcag
    14281 taacgttgat ttacctgctc cattctctcc cattaaggcg tgaacactat gggatttcac
    14341 cgttaagtta gcattatcta aggcttttac cccgggaaat gacttgctaa catttgtcat
    14401 tgtgagtaaa acttcacctg tcatatctca cccctgatta catcgaaaaa tcgaaaaaaa
    14461 gcacgggtat ccatcacccg tgctaaaagc gtgaattatt ttaaaaattc agataagttg
    14521 tctttatcga caccaacgta aggaatacgc accacacggt tttccaattt ccattgtgta
    14581 ccagcaactg catctttacc gtctgctaag ttagcagaaa gctgaacaac cgctttacct
    14641 tggtttacac catcatttaa taccgtaccg gctaattcac cttttttgat taattgaagt
    14701 gcttctggca atgcatctac accgaagatt ggtaattttc taccgtgagc tttggttgct
    14761 tctaatgcac ctaacgccat accatcatta ttagaaataa ttacttcgat gtctttcgct
    14821 ttaccacttg ataaccaagc atccacttta tctttagctt gggctgcatc ccataatgct
    14881 gcgtccataa agatttgctc actgtcgata ccttgtgctt ttaagctttc taccacatat
    14941 ttagtacgtg cttccgcatc agggtgaccc ggctcacctt ttaataaggc aaattggatt
    15001 ttaccgtctt tattcaagtc taattcagga tgggctttcc actgttttgc aattaactca
    15061 ccttgaataa tgcctgactc tttcggctca gtacctacat aataagcttt cggatagcta
    15121 tcaatcgcag ctgcacccgg gtctttattg aagaacacca caggcacatc ttcacttttt
    15181 gctttttgaa taattgtttt ataagctgat ggatccacta agttaattgc taatgcttta
    15241 acccctttag aaagtaatac atcaacttgg tcgttttgaa tagattgcgt attttgcgag
    15301 tcattcatta ataactcgac tttttgtgtt ttaccctctt tttcgatttc tttacgcatt
    15361 aatgccataa agttatcgtc atatttataa attgttacac caatacggtt ttcagcttga
    15421 gctgtactga tcgttgcacc taatgcgact gccattgcca ctgcacttaa tactgctttc
    15481 ttcatagtag atcacctctt ttatgtgttt atagggaaat gaattgctta ccataagcaa
    15541 cttggtgcaa agtataacta attttaaaaa aacaatccgt gatcattctc acagaattaa
    15601 gacaaagtgg agaaattttt aattttaagt ataaaatttg aatattcgct ctattcaaat
    15661 ctgttggaag aaaagagaaa ggatttgcaa gattttactg aaaaatgacc gcttgttatc
    15721 atcaataagg ggcgtattta taacgccccg ctcctccatt taaggtaaaa attgccctaa
    15781 attttcctta tcaataccaa tatgtggaag ataaatcgtt ttagaggaat ggctttccca
    15841 ctgcgtatct ttcagcgcag gcttaccttg tgccaaatta gataccaatt tcaccaccgc
    15901 tttcgcttgt gcagagctat catttaatac cgtgccggct atttcccctt ttttcattaa
    15961 tgctaacgtc tcaggcaagg catcaatacc aaagatcggc aatcttttct cgtgtgcatt
    16021 taacgcatct aaagcaccaa ttgccatttc atcattgttt gaaatcacaa cttcaatctc
    16081 agctgcacgg ttttccacca gccactcatt cattttattg cgagccaatg ttctacgcca
    16141 tctcgccgtg tcactgtaaa tttcttctgc ctgaacacct tgttgattaa gcgattcaac
    16201 cacagcttga gaacgctcag cgctcacatc actcggctcg cccttaagca atacaaattg
    16261 caatttcccg tctttattta gatcgaaatc ggggtttgat ttccacactt tcgcaattaa
    16321 ttccccttgg attctaccgg cctctttagg atcagcgctc acaaagtacg ccttttcgta
    16381 actttctaac gcttgtttac tcggtgtgcg gttaaaaaag acaaccggca cattataagc
    16441 cttcgctttt tccacaatag ttttcgactc atttgcattc acaatattca ccgccaacac
    16501 acgcatttta tgctgaagta aggtttcaat ttgcgctaat tgcttcactt gggaattttg
    16561 tgcatcattc ataaaccact tcaacccagc gaagcctttc gcctcgtttt gcatatcctt
    16621 acgcatttga gtcataaaat ggtcatcata tttgtaaatc gttaccccca ctctgctttc
    16681 agattgtgcg taacttagat tcacaccgca aataacagaa agtgcaaaag cactcaagat
    16741 tgtacgcttc atagaatgtc cctcttgcta tgccaaatat gaaccaattc aagcatagcg
    16801 aattttgtgt aaggaaaccg tgatctagtt cacaatttag ccagatttaa cccacctcag
    16861 gcgtaaatga tcgtacaccc aattaaaaac taccgaataa actaatacaa ataaggtcat
    16921 tccaatatcc atcacaaacg cctgccacca gccgatatcg agcatataca ttaccaatgg
    16981 gatagtaaaa accagcaaac cgccctcaaa aaggaatgaa tgcaaaatac gaatgcctaa
    17041 accacgttgc actcgctcac cggtaaacac cttatcaaaa ccccagttaa aaataacatt
    17101 ccacaccatt gcaatcaccg aaatcatcac aatcactgcg gttaaatcaa ccatacgatg
    17161 agaagtcagc caagaagtta agataaccgt aaaaataata gcgaaacatt caaataacag
    17221 cgcgtgaaac acacgctccc aagcggtcat ttttcctcca aactttgcaa aataccaact
    17281 aaatcaaata atcgttcact gatgattgca ggttacgcaa tttagtttta aagtacctac
    17341 attattcatc aatttagaag gattagccaa tgaaaaacga taaaccgatt gaatgcgaag
    17401 gctgtaacac atttgatgta ggttctattt tagataacag cgaaacagtc gctactattc
    17461 agcgcactta tgaaagcgaa aatgaagcta aagcggcact tgaaaaattc actcaaaaag
    17521 cccgtgatgt cgaatctgaa ccctgtgaaa tcagcagtga aatcaccccg attgaaagcg
    17581 gttttgaact ggttgctcac ttcaaattta gctgccaagc agaagtggtt atttttcaat
    17641 taggaacacg tttctaatac aaaaagctga ttcaaacact tgaatcagct tttgtatgat
    17701 agctattttt gatgttgttc caaaatatcg ttccactcta aatgatagta aaaccaatat
    17761 tttttacgcg tagatatttg cattgtatgc agttcttttt tccaaggttt gaatttactc
    17821 gtatagtgga taattttcgg aatcacatct aaatagccat tttttctcgc aagttcctct
    17881 tgttctcttc ttaatactag ttcaagaatt gcatcaactt gataattata ctctatcggc
    17941 aatgctcccc aaccgccttt aaagtaaata ttgagagcat cttgatcgcc ataagttaag
    18001 tttacaattt tttcattgat agtaaccaac tcatcacata ctgaatactt cttccaaagt
    18061 atattattaa ttaatagtac cccagaatta aaataagggc tgaggtctaa atcaagataa
    18121 gccggtatat gattatgaac ataatcctct actgcatata aaggtatacc attaaaatta
    18181 agccagtaca tttctgataa attatcatca accacaatat ctgaatctaa atatagtaca
    18241 cgttcttcgt ccagatatgg aataaggtaa cgataaaaac ccgtttcatt aatatgctct
    18301 aaactcttat attttgaaaa atctacacag actttcacag gaataatttc actcgataat
    18361 aaggctaatt tttggcacca gatatcaaac cattcattag gaaaagtttt ctgaaataga
    18421 taaatcttaa gatgagaatg atgataacaa agcgatttaa ttaaggtttc aacttgagtt
    18481 tgatagccta aatcagctgc taatgcaata actattggtt ggttgattga ttgattg
//
LOCUS       DANLRW010000046        18122 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.046, whole genome shotgun sequence.
ACCESSION   DANLRW010000046 DANLRW010000000
VERSION     DANLRW010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 18122)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18122)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18122
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.046"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            85..1176
                     /gene="ulaG"
                     /locus_tag="PXA71_001314"
     CDS             85..1176
                     /gene="ulaG"
                     /locus_tag="PXA71_001314"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001863918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HDL5105427.1"
                     /translation="MSKIQEITRESWILSTFPEWGTWLNEEIEEEVVPEGNFAMWWLG
                     CVGVWIKTPAGANICMDLWCGRGKSTKKVKDMVRGHQMANMAGVRKLQPNLRAQPMVL
                     DPFAINEVDFILASHYHSDHIDVNVAAAICNNPKLDHVKFVGPWHCAELWKKWGVPEE
                     RIIVVKPGDVVKLKDVEIHALDSFDRTCLVTLPVEGAEERGGELAGLCPSDEEMGRKA
                     VNYVFKTPGGTIYHGADSHYSIQFAKHGKQFDIDVALNNYGENPVGIADKMTSVDLLR
                     MAECLRCKVIIPVHHDIWTNFMASTQEIIDLWRMRKDRLQYQFHPFIWEVGGKYVYPR
                     DKDLIEYHHPRGFDDCFEQEPNIQFKSML"
     gene            1260..2006
                     /gene="ulaR"
                     /locus_tag="PXA71_001315"
     CDS             1260..2006
                     /gene="ulaR"
                     /locus_tag="PXA71_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HDL5105428.1"
                     /translation="MNESYRHKELLALLEERKALSTADIMQLLNISPATARRDISKLD
                     GQGKLKKVRNGAEAILAPTFLQHTKITNNAQEKRRIAEAAGRLCKDGESLILTCGSTM
                     EMLGEVLCGRKLQIITNYLPLANQLIAGCHDDVVIMGGQYNKHKKVMLSINTQNEMTY
                     AATTMFTSGKGLTSEGLFKTDMIIANAEQQMAKHAERYVVLLDSTKLGKKVGMLFKEF
                     DKIDLLITGKEADPTIIQALRNKGLDIILA"
     gene            2061..2921
                     /locus_tag="PXA71_001316"
     CDS             2061..2921
                     /locus_tag="PXA71_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HDL5105429.1"
                     /translation="MRKHKLGIYEKALPKNISWQDRLSIAKVCGFDFVEMSIDETDER
                     LARLDWSKKERAKLVKTIINTGVTIPSMCLSGHRRFPFGSCDEATRQKAYEIMEKAIQ
                     LAVDLGIRTIQLAGYDVYYEEQDEGTIQRFQQGLEWAVELAASNQVTIAVEIMDTQFM
                     SSISRWKKWDEIIKSPWFTVYPDLGNLSAWNDNVAEELKLGIDKISAIHLKDTYKVTE
                     TCKGQFRDVPFGDGCVDFAACFKTLAELNYRGAFLIEMWTEKAEEPITEIINARRWIE
                     QKMQEGGFTL"
     gene            2918..3637
                     /locus_tag="PXA71_001317"
     CDS             2918..3637
                     /locus_tag="PXA71_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HDL5105430.1"
                     /translation="MTQLTELTPALQALRERVLKANLELPKYGLVTFTWGNVSEIDRE
                     TGLVAIKPSGVEYDAMTVEDIVLVDLQGNRVYGDKKPSSDTETHLELYRQFTDIGGVV
                     HTHSRNAVGWAQAGRDLLALGTTQGDYFYGAIPCTRKMTAEEIAGSYELETGKVIVET
                     FRTRGIEPKAVPGVLVHSHGPFTWGKDGHDAVHNSVVLEEVAYMNFISHQIRPQIGPM
                     QQELLDKHYLRKHGANAYYGQ"
     gene            3858..6335
                     /locus_tag="PXA71_001318"
     CDS             3858..6335
                     /locus_tag="PXA71_001318"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012311.1,HMM:TIGR02601.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL5105431.1"
                     /translation="MYLLEGNQKVKNRNYFVAIATILALSPEVNATELSDQLASRTRY
                     YPSATDSYYSYYKYAPIYSGYYTSNSRNGYSSWYYPGSNAGVTTRTVSTTVNGITVTK
                     VYTTHNGRTTVRTTYAPAVNKPIVNKPTPIANKPVVDTPTQPVIDANPIMDPPVQPIV
                     DNKPITDTQPNPITDNKPVIESPIDDTRPVIIRPTTPVNLHPEPVAVGVPNVGIRWND
                     RSRGYNIDDPNNKQNVKLTGEGVKVGILDSGFKNYLMQDDILKKFGNRAVIIETGRTA
                     PASATHGIEVAEMVGGGNSRNGVASKSTLLLADITKTTNAGTGLSATAPIYYDLWNRG
                     ARIFNQSYGIPKPLTYFNNNRNSSYYYLHQFDGNVLQFYKDKVKEGGLFVWAAGNNRG
                     DLDPSLQAGLPHYEADLEKGWISVVAVATRTNQGLGNFEWSNLLPYSQAGVAKNWTVT
                     AMGDYIFNLGGRNIIASGSSFAAPAVTGTAALVKQKYPWMDGNLIKQSILSTATDIGA
                     PGVDDVYGWGLLNIEKATNGPARFGKRLALADNVTVNIPNGSYEFSNNINGDAGLVKN
                     GQGELILSGASTFEGDTTLNEGAVTINGKKYVSKVNVSPSGTLVVNNTTLENGVNNEG
                     TVVNQGYSTIKRAYVASAQSTLVSDLGSNLNVKGEVDLNGSTLSLAAVKEGKAQYVTQ
                     KGLSMSAITSDSAIKGNFAAIETSGLLTATAEKTNENEVKATVSRKNVATALESSFSA
                     LDNQIEGNNGSTNATNDEFAQQAATLQNSIANINTQSVVLDSLSGQIYASAQALTFEN
                     SETVNKDLSNRLVMLGTLDNVGETAGV"
     gene            6345..7160
                     /locus_tag="PXA71_001319"
     CDS             6345..7160
                     /locus_tag="PXA71_001319"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HDL5105432.1"
                     /translation="MYGNGTLKEIGFGEGKTNTYAGQIGFDKPVTDHVILGAALNYSK
                     AKVNFDRYGGSSKADGIGASLYARIGNKHKTPWYLQGRAGYGSVDSDVERHIILADNN
                     ASTAKINHRDRVFSAYVESGYDFKQGRFALTPFVGFSHDVVRRGAFSEQNSQFGLTAD
                     KATYKQTSGLIGLRTSLEVNLAGMKTTFQGYVNHQKAFNREDLSFKASYTGLQDAKFD
                     VKGIGLAKHKTWVGIGALAEVNKNTSLYVNYDLKLAKNSGHNNVVTAGIRINF"
     gene            complement(7247..8107)
                     /gene="pdxY"
                     /locus_tag="PXA71_001320"
     CDS             complement(7247..8107)
                     /gene="pdxY"
                     /locus_tag="PXA71_001320"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HDL5105433.1"
                     /translation="MKNILSIQSHVVYGYAGNKASTFPMQLLGVDVWALNTVQFSNHT
                     QYGKWGGMVMPKEQIGSIVDGIHNIGELHRCDAVLSGYIGSAEQVAEIIQAFHKVKAE
                     NPNAIYVCDPVMGHPDKGCIVADGVKEGLINLAMAQADIITPNLVELRELTGLTVENF
                     EQAVEAVKVILTKGPKKVLVKHLSRVGKESNKFEMLFANQDGIWHISRPLYQFAKEPV
                     GVGDLTAGLFVANLLNGKSDLEAFEHTANAVNEVMEQTARSGLYELQIIASRDRIVNP
                     QCSYQAVKIA"
     gene            8226..8301
                     /locus_tag="PXA71_001321"
     tRNA            8226..8301
                     /locus_tag="PXA71_001321"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8259..8261,aa:Thr,seq:tgt)
     gene            complement(8396..9349)
                     /gene="accA"
                     /locus_tag="PXA71_001322"
     CDS             complement(8396..9349)
                     /gene="accA"
                     /locus_tag="PXA71_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HDL5105434.1"
                     /translation="MSQEFLDFELPIAELEAKIESLRAVSEQDDKINLDDEIKRLQKK
                     SEELTKKTFANLDAWQISRMARHPNRPYTLDYIEHIFTEFDELAGDRAFADDKAIVGG
                     IARLDGRPVMVIGHQKGRTVKEKVKRNFGMPAPEGYRKALRLMEMAERFNMPIITFID
                     TPGAYPGIGAEERGQSEAIARNLREMSQLSVPVICTVIGEGGSGGALAIGVGDKVNML
                     QYSTYSVISPEGCASILWKSADKASTAAEVMGLTAPRLKELELIDNIVPEPLGGAHRN
                     VEQIAQNLKQRIVEDLAGLDQLNKEDLLERRYQRLMNYGYV"
     gene            complement(9403..10827)
                     /locus_tag="PXA71_001323"
     CDS             complement(9403..10827)
                     /locus_tag="PXA71_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HDL5105435.1"
                     /translation="MKKQITRRQFLQGSALAAGFATVPTPLLAAERPQLNIPPLMDIG
                     RGKPVRLDLRPAQTQFDKGKLVDVWGVNGQYLAPTVRVKSGDFVKLTYLNNLPQKISM
                     NIQGLQASSEMIGTVHRSLDPKSSWSPIVSINQPACTCWYHADTMLNSAFQVYRGLAG
                     LWMIEDEQSKKATLPNKYGVNDIPLILQDQLLNKDGVQVLDKNTSQFFGKRLFVNGQE
                     SPYFNVPRGWVRLRIVNASLSRAYELRLDNEQPLYLIATGLGMLAEPLETESVQLAPS
                     ERVEVLVDLSEGKAVSLISGQKRDIFYKIGQVFADNDELNDNVILELRPEGMAAVLNN
                     KPSLPAFNLEEFNLKISQERRFAIRPADYLINQKRFDPKRIDFTAQKGSVERWYLHST
                     QAVGFTLQGAKFIIETLNRKQYPIKQLAWRDTVWLEAEQEITLLVRFDNTAPEQLPFT
                     FGVSDFMLRDRGTMGQFSVIENGQ"
     gene            complement(10829..11563)
                     /locus_tag="PXA71_001324"
     CDS             complement(10829..11563)
                     /locus_tag="PXA71_001324"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HDL5105436.1"
                     /translation="MLKIFRILIVALAAIFISIFGTIYALLRLRHPSSVGVVARWFGA
                     LHKLVGLELITRKKPEINYPVVYIGNHQNNYDMVTISSMVAEKTVSIGKKSLIWIPFF
                     GLVYWATGNIFIHREKRSSAIETMNKAGQIVKERNVSVWMFPEGTRSRGRGLLPFKTG
                     AFHLAISAGVPIVPVVCSNLHNKVDLNRSNNGTVICEMLDPIDTSGYSRENVKELMEK
                     CHQIMLAKFEQLNQEVEQLENTAKNA"
     gene            11710..12207
                     /gene="tpx"
                     /locus_tag="PXA71_001325"
     CDS             11710..12207
                     /gene="tpx"
                     /locus_tag="PXA71_001325"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDL5105437.1"
                     /translation="MSKVTLAGSPIDVAGTFPQKGDVVADFTLVNSDLSDVSLSDFDG
                     KRKVLNIFPSIDTGICATSVRVFNQKAADVANTVVLCISADLPFAQARFCGAEGIENA
                     KVLSSFRHRDLHNKLGVDIISGPLAGLTSRSVIVLDENNKVLHSELVPEIKQEPDYEA
                     ALAVL"
     gene            complement(12292..13917)
                     /gene="yidC"
                     /locus_tag="PXA71_001326"
     CDS             complement(12292..13917)
                     /gene="yidC"
                     /locus_tag="PXA71_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDL5105438.1"
                     /translation="MNNRGLLLMGLFLVSILIFTQWQQDFDPEIQAQKQAQVAAQTQQ
                     AGDLPSASNANNPIADSITQGKTITVESDVLRLTIDTLGGDVIGSDLLKHNAELHSNT
                     PFKLLQQDGDKIYVAQSGLVGKNGIDTNAGRPQYAVTADSFKLAEGQNEISVPLTFEK
                     EGVVYTKTFTLKRGSYDVGVNFNIKNNTAQAIEVQPYGQLKHSIVESSGNLTMPTYTG
                     GAYSSSETNYKKYSFQDMEKANLSVDTKAGWIAVLQHYFVSAWVPNQDADNSLYSRTN
                     NGVATIGYRGPLTTIAPNSEANLNSKLWTGSKDQKEMGESANHLDLTVDYGWAWFIAK
                     PLFWLLTAIQKIVSNWGLAIIGVTIVVKTILYPLTKAQYTSMAKMRMLQPRITEMRER
                     FGDDRQRMSQEMMKLYREEKVNPMGGCLPILIQMPIFIALYWTFMEAVELRHAPFFGW
                     IQDLSAQDPYYILPLLMGGSMFLLQKMSPTPVADPVQQKVMTFMPVIFTVFFLWFPSG
                     LVLYWLTSNLITIAQQWLIYRNLEKKGLHSRKK"
     gene            complement(14070..14495)
                     /locus_tag="PXA71_001327"
     CDS             complement(14070..14495)
                     /locus_tag="PXA71_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hotdog fold thioesterase"
                     /protein_id="HDL5105439.1"
                     /translation="MTIWKQTATCEQLNTLSQKSAVSHLGIEFTAIGEDWIEAQLQVD
                     ERTQQPFGVLHGGVSAALAETTANAGALMVCEPHQIAVGMELNISHLKSIPAGTKAIA
                     KATPLKLGREVQVWNIDIKDEQGNLCAVARLSTKTLDKR"
     gene            complement(14824..17916)
                     /locus_tag="PXA71_001328"
     CDS             complement(14824..17916)
                     /locus_tag="PXA71_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HDL5105440.1"
                     /translation="MIPRLSEVPQLDKATQSYLTELVNQHFSGEIASNYADRLSLATD
                     NSVYQQIPQAILFPKSVSDVVILTKLAQKPEYQHLTFTPRGGGTGTNGQSLNNNIIVD
                     LSRHMNQILELNVEERWVRVQAGVVKDQLNQFLKPHGLFFSPELSTSNRATLGGMINT
                     DASGQGSLQYGKTSDHILAIKSVLINGDILETQAVKSADFFAHIEGLNLSALGKTLHR
                     EIFNRCKTLRPKVLNELPQLNRFITGYDLKNVFNHGESEFNLTRILTGSEGSLAFICE
                     AKLNLLPIPKYRTLINIKYNSFDAALRSAPFMLEAKALSVETVDSKVLNLAKQDIVWH
                     SVSDLLTEDPANPILGINIVEYASSDQTQIETQVKALCQSLDQKMANNEAGIIGYQLT
                     SDVNSIEKIYAMRKKAVGLLGNAKGWAKPIAFVEDTAVPPENLADYIVEFRALLDRYN
                     LPYGMFGHVDAGVLHVRPALDLCDKAQVETFKQISDQVVELTAKYGGLIWGEHGKGMR
                     SYYGERFFGETLWQELRYIKTLFDPYNRLNPGKICTPLESETSLYPIDSQMRADFDRQ
                     IPIQVREEFKGAMNCNGNGLCFNFDVHSTMCPSMKVSGNRLYSPKGRATLVREWLRLL
                     TEQNVSPDDLIFKPRKQAVKLADFVAKIRNTLNKNKEYDFSHEVKAAMDTCLACKACA
                     SQCPIKIDVPTFRSQFNELYHSRYLRPLKDYVVSNLEFIAPLMAKQPRFFNFFSTSTF
                     AEKAANKTIGMTYLPALSVPNLQHQLVEVGYQGESLESLEQQATSGDFSAKNCKTLFI
                     VQDPFTSYYDAKVVADFIALIKKLGFKPIVLPFKPSGKAQHVKGFLHKFAKTAKNQAD
                     FLNRVAKLGLPMVAVDPALTLLYREEYKEILKEARGDFKVLLAHEWLREVIKNGELEN
                     CKKSANSDRLPWYLFAHCTESTALPSSMKEWQAIFTHFGETLLNENVGCCGMAGTFGH
                     ETKHVEMSKAIYQQSWQIKLKNKPLERCLATGYSCRSQVKRFEQQGIKHPIQALLDVI
                     "
BASE COUNT         5181 a         3652 c         3953 g         5336 t
ORIGIN      
        1 aaaaaagatg tacaaatttt tgtgattgtt tatgattggt tttgattgca ttgttcttat
       61 tttagcgtaa atcaggagac tattatgagc aaaattcaag aaatcactcg tgaaagctgg
      121 atcctttcaa ctttccctga atggggtact tggttgaatg aagaaattga agaagaagtt
      181 gtaccggaag gcaattttgc aatgtggtgg ctaggctgtg tcggtgtgtg gattaaaacc
      241 ccagctggtg cgaatatctg tatggattta tggtgcggtc gtggtaaatc caccaagaaa
      301 gtaaaagata tggtgcgtgg tcatcaaatg gcaaatatgg caggggtgcg taagctccag
      361 cctaatttgc gggctcaacc gatggtgtta gatccgtttg cgattaacga agtggacttc
      421 attctcgctt ctcactatca ctcagaccat attgatgtaa acgtggcagc ggctatttgc
      481 aataacccga aattagacca cgttaaattt gtcggccctt ggcactgtgc agaattatgg
      541 aaaaaatggg gcgtgccgga agaacgtatt attgtggtaa aaccgggcga tgtcgtgaaa
      601 ttaaaagatg tagaaattca cgccctagat tcatttgacc gtacctgttt agtgacctta
      661 ccggtagaag gtgcagaaga acgtggcgga gaacttgcag gcttatgccc atcagatgaa
      721 gaaatgggac gcaaagcggt gaactatgtg ttcaaaaccc cgggcggtac gatttatcac
      781 ggtgcagatt ctcactactc aatccaattc gctaaacacg gtaagcaatt tgatattgac
      841 gtagcgctga ataactatgg cgaaaacccg gttggtattg cggataaaat gacttcagtt
      901 gatttattac gtatggcgga gtgtttacgc tgtaaagtga ttattccggt tcaccatgat
      961 atttggacaa actttatggc aagtacgcaa gaaattattg atttatggcg tatgcgtaaa
     1021 gatcgcttac aataccaatt ccacccattt atttgggaag tgggcggcaa atatgtttac
     1081 ccacgtgata aagacttaat tgaatatcat caccctcgcg gctttgatga ctgcttcgag
     1141 caagagccaa atattcaatt taaatccatg ctataggtga gcagtcgcca ctctcactgg
     1201 agagtggcgt tttagcaagt tcattatgga gcagtagtga ttagtaatgg gataaagtag
     1261 tgaacgaaag ttatagacac aaagagttat tagccctgtt ggaagagcgg aaagcactgt
     1321 caacagcaga tattatgcag ctgttaaata tttctccggc aacagcaaga cgtgatatca
     1381 gtaaattaga tggtcaaggt aaattaaaaa aggttagaaa cggagcagaa gcaattctgg
     1441 ctcctacatt tttacagcac acaaaaataa ctaacaatgc gcaggagaaa cgtagaatag
     1501 cggaagctgc cggtcgttta tgtaaagatg gggaaagtct tattctgacg tgtggttcca
     1561 caatggaaat gctcggtgaa gtattatgtg gtagaaaatt gcaaattatt accaattatc
     1621 taccgcttgc aaaccagttg attgcaggtt gccacgatga tgtagtgatt atgggtgggc
     1681 aatataataa acataaaaaa gtgatgctct caattaacac ccaaaatgag atgacttatg
     1741 ccgctaccac aatgtttacc agtggcaaag gcttaaccag cgaaggatta tttaaaaccg
     1801 atatgattat tgccaatgcc gagcaacaaa tggcaaagca cgcagaacgt tatgtggtgt
     1861 tattggatag caccaagctc ggcaaaaaag tcggtatgct gtttaaagag ttcgataaaa
     1921 ttgatttatt gattaccggc aaagaggcgg atccgactat tatccaagca ttaagaaaca
     1981 aaggcctgga tattatcttg gcttagcctg tagcggtcaa atttaatcaa aattttactt
     2041 atcatcttca agggaaaact atgagaaaac ataaactggg tatttacgaa aaggccttgc
     2101 cgaaaaacat ttcgtggcaa gaccgccttt ctatcgccaa agtctgcggt tttgactttg
     2161 tggaaatgtc gattgacgaa acggacgaac gcttagcccg ccttgattgg agcaaaaaag
     2221 aacgtgccaa gctggtgaaa accatcatca acaccggcgt gaccattccg tcaatgtgct
     2281 tgtccggtca tcgccgtttc ccgtttggtt cttgtgatga agcgacccgc caaaaagcct
     2341 atgaaattat ggaaaaagcc attcaactgg cggtcgatct cggtattcgc accattcagc
     2401 ttgccggcta tgacgtctat tacgaagagc aggacgaagg cacaatccaa cgcttccaac
     2461 aaggcttaga atgggcggtg gagctggcgg caagcaacca agttaccatt gcggtggaaa
     2521 ttatggacac ccaatttatg agttcgattt cccgctggaa aaaatgggac gagatcatca
     2581 aatcaccgtg gttcaccgtg tatccagatt taggcaacct ctcagcgtgg aacgacaacg
     2641 tagcggaaga gctgaaactc ggcatcgaca aaatctctgc cattcactta aaagacactt
     2701 acaaagtgac tgaaacctgc aaagggcagt tccgtgatgt gccatttggt gacggttgcg
     2761 tagatttcgc cgcttgtttt aaaacccttg ccgagctgaa ttaccgtggc gcattcttaa
     2821 ttgaaatgtg gacggaaaaa gccgaagagc cgattactga aatcatcaac gcccgccgtt
     2881 ggatcgaaca aaaaatgcaa gaaggaggat ttaccctatg acgcaattaa ctgaattaac
     2941 ccctgcatta caagccttaa gagagcgtgt gttaaaagcc aatttagaat taccgaagta
     3001 tggcttggta actttcactt ggggtaacgt aagtgaaatc gaccgtgaga ccggtttagt
     3061 cgccatcaaa ccttccggcg tagaatacga tgcgatgacg gtggaagaca ttgtattggt
     3121 tgatttacaa ggtaatcgag tttacggaga taaaaaaccg tcttctgata cagaaacgca
     3181 cttagaactt tatcgccaat tcactgatat tggcggtgtg gtacacactc actctcgcaa
     3241 tgctgtaggt tgggcacaag cagggcgtga tttattggca cttggcacca ctcaaggcga
     3301 ttatttctac ggtgcgattc cttgtactcg caaaatgacc gcagaggaaa ttgccggcag
     3361 ttatgagctg gaaaccggaa aggtgattgt cgaaactttc cgaactcgag gtattgaacc
     3421 gaaagcagtt ccaggtgtgt tggtacattc acacggtcca tttacctggg gaaaagatgg
     3481 acacgatgct gtgcataatt ctgtggtatt agaagaggtg gcttacatga attttattag
     3541 ccatcaaatt cgcccacaaa ttggcccaat gcaacaggaa ttattagata agcattatct
     3601 gcgtaagcat ggtgcaaatg cttattatgg gcaatagcta ataacctaaa aattattttc
     3661 caaattatca acagctttcg aggggctttc tataatcgga atagctcctc agtctgtttg
     3721 agtttatgga tagatccaca aataattacc attttccttt tcttgatttt aattttgatt
     3781 tttgttctaa tctctgcctc ttgtttttac aagtctatta aggatccgta gtagatttga
     3841 aataaacaag agtatctttg tatttattag aaggaaacca aaaggtgaaa aatagaaatt
     3901 attttgttgc aatagcaaca atattagcct tatcgccaga ggttaacgca actgaacttt
     3961 cagatcagct tgcaagtaga acaagatatt atccttccgc cacggatagt tattatagtt
     4021 actataaata tgcaccgatt tattcgggct actatacatc gaatagccgt aatggttatt
     4081 cgtcgtggta ttatccaggt agcaatgcag gtgtaacaac cagaactgtt tcgacaacag
     4141 ttaatggcat tacagttaca aaagtttata caacgcataa tgggagaaca accgttcgta
     4201 ccacttatgc tcctgctgtg aacaaaccaa ttgtaaataa accgacaccg attgccaata
     4261 aacccgttgt agatacgcca actcaaccgg ttattgatgc caacccaatt atggatccgc
     4321 cagtccaacc aatagttgat aataaaccca tcactgatac acagcctaat ccaattacag
     4381 ataacaaacc tgtcattgaa tcgccaattg atgacacccg tccagttatc attaggccta
     4441 caacaccggt aaatcttcat cctgaacctg tagctgttgg tgtacccaat gtaggtattc
     4501 gatggaatga ccgctctcgt ggttacaaca ttgatgatcc taataacaaa caaaatgtta
     4561 agttaactgg tgaaggtgtt aaagtcggta tcttagatag tggttttaaa aactatttaa
     4621 tgcaggacga tatactcaaa aaatttggta atcgcgctgt tattattgaa acagggcgta
     4681 ctgccccggc ttctgcaaca catggtattg aggtcgcaga aatggttggg ggagggaact
     4741 ctcgcaatgg agtagcgtct aagtcaacgt tattacttgc ggatattacc aaaacaacaa
     4801 atgcgggtac aggattatcc gcaacagctc caatttatta tgacttatgg aataggggag
     4861 cccgtatttt taaccaatca tacggtattc caaagcctct tacttatttt aataacaata
     4921 gaaattctag ctattactat ttacaccaat ttgatggtaa tgtgttgcaa ttctataagg
     4981 ataaagtaaa agaggggggc ttatttgtct gggctgcggg gaataaccgt ggtgatcttg
     5041 atccatcact ccaagctggg ttacctcatt atgaagctga cttggaaaaa ggttggattt
     5101 ctgttgttgc ggtagcaacc agaactaatc agggattggg taactttgaa tggagcaatt
     5161 tattgccata ttctcaagcc ggtgtggcaa aaaattggac cgttaccgca atgggtgact
     5221 acatctttaa tttaggaggt agaaacatta ttgctagtgg ttcatccttt gcagctccag
     5281 ccgttacggg tacagcagct ctcgtgaaac aaaaatatcc ttggatggat ggtaacctta
     5341 tcaaacaatc tattctctcg acggcaaccg atatcggcgc tcctggagtt gatgatgtat
     5401 atggatgggg tttacttaat attgaaaaag ccactaatgg ccctgcgcgt tttggtaaac
     5461 gactcgcttt agccgataac gtgactgtaa atattccaaa tggaagctat gagttttcca
     5521 ataatattaa cggtgatgca ggcttggtga aaaatggcca aggcgaatta attttatcgg
     5581 gtgctagtac ttttgaaggg gatacaacac tcaatgaagg tgctgtcact attaacggta
     5641 aaaaatatgt gtctaaagta aacgtatctc caagtggtac attggttgtc aataatacca
     5701 cgttagaaaa tggcgtaaat aacgagggta cagttgtcaa ccagggttat tctacgatta
     5761 agagagctta cgttgcttca gcacaaagta cgctagtgtc agatttaggt tcaaacttaa
     5821 atgtaaaagg agaagttgac ttaaacggct ctactttatc actagctgcg gtaaaagagg
     5881 gtaaagctca gtatgtgacc caaaaaggtt tatcaatgag tgctattact tctgattccg
     5941 caattaaggg taactttgct gcaatagaaa cctcagggtt attaactgcg acggcggaaa
     6001 aaaccaatga gaatgaagta aaagcaacag ttagccggaa aaatgtcgcg actgctttag
     6061 agagctcatt ttcggcattg gataaccaaa ttgaaggaaa taatggttct acaaatgcta
     6121 caaatgatga attcgcacaa caagcggcta ctttacaaaa cagtattgca aacatcaata
     6181 cgcaaagtgt ggttttagat agcttatctg gtcaaattta tgcgtctgcg caagcgctta
     6241 cttttgaaaa ctcagaaaca gtgaataaag atctctctaa ccgtcttgta atgttaggaa
     6301 cgctggataa tgtaggtgag actgctggtg tgtgagtaac gggtatttat gggaatggta
     6361 ctctaaaaga aatagggttt ggtgaaggta aaaccaatac ctatgctggc caaataggtt
     6421 ttgataagcc agttacagac catgtgattt taggtgcggc acttaattat tctaaagcaa
     6481 aagtgaactt cgatcgttat ggcggtagtt caaaagcaga tggaataggt gcatcattat
     6541 atgcccgtat aggcaataag cataaaacac cttggtattt acaaggtcga gccggttatg
     6601 gcagtgttga ttcagatgta gagcgtcata ttattttggc ggataataac gcaagtacag
     6661 caaaaatcaa ccaccgagac agagtatttt ctgcttatgt tgaatcaggc tatgacttca
     6721 agcaaggtcg ctttgcgtta actccatttg tcggttttag tcatgatgtt gtcagacgtg
     6781 gcgcattcag tgagcaaaac agtcaatttg gtctcaccgc ggacaaagca acctataaac
     6841 aaacaagcgg attgattggt ttacgaacat ctttagaggt gaatttagct gggatgaaaa
     6901 cgactttcca aggctatgta aatcatcaaa aagcgtttaa tcgagaagat cttagcttta
     6961 aagcaagtta tacaggttta caagatgcaa aattcgacgt aaaaggtatt gggcttgcaa
     7021 aacataaaac gtgggtaggg attggtgcat tggcggaagt aaataaaaat acttccttat
     7081 atgtgaatta cgaccttaaa ctcgcaaaaa atagtggtca caacaacgtt gtgactgctg
     7141 ggattagaat taatttctaa ctgaatcttt ttaaacaaaa cgggcgttta tacgcccgtt
     7201 tttttatagt tatagagata ataatgttat tttatacttc atttaattag gcaatcttta
     7261 cagcttggta actacactgt ggattaacaa tccgatcacg agaagcaata atttgtaact
     7321 cataaagccc tgatctagcg gtttgttcca ttacctcatt gaccgcattt gcagtgtgtt
     7381 caaaggcttc tagatcggat tttccattta ataagttcgc cacaaatagc cctgcggtta
     7441 aatcgcctac accgacaggt tctttggcaa attggtagag tgggcggctg atgtgccaaa
     7501 tgccatcttg gttggcgaac agcatttcaa atttgttgct ctctttgccg actcggctta
     7561 aatgtttaac caatactttt ttcgggcctt tggttaaaat cactttcact gcctcgaccg
     7621 cttgctcaaa attttccacc gttaaaccgg ttaattctct taattccact aaatttggtg
     7681 tgataatgtc ggcttgtgcc attgccagat tgatcaatcc ctcttttacg ccgtctgcca
     7741 caatgcagcc tttgtcgggg tgtcccatta ccgggtcgca tacataaatt gcgtttggat
     7801 tttccgcttt cactttatga aaagcctgaa taatttcggc tacttgttct gccgagccga
     7861 tatagccaga gagtacggca tcgcaacgat gcagttcacc gatattgtga atgccatcaa
     7921 caatgctacc gatttgttct tttggcatca ccataccgcc ccattttcca tattgggtat
     7981 ggttggaaaa ctgtacggta tttaacgccc atacatcaac acctaacagc tgcataggaa
     8041 aagttgaagc cttattgccg gcatagccgt agacaacgtg cgattgtatg gatagtatgt
     8101 ttttcattca ttcactcctt taaaatttca atatgtgttg ttttttagtc atttgaagtt
     8161 gcaaggactt gaagctcatc aagaaatctc tataatcccg cctcgttctc ttatccattc
     8221 aatatgccga cttagctcag taggtagagc aactgacttg taatcagtag gtcaccagtt
     8281 cgattccggt agtcggcacc atcaccttta ttttctgatg agtccccttt aatgtaaaat
     8341 ggcaagattt tgcaaatttt cacaaaaatc ttaccgcttg tagggtgaaa ttgaattaga
     8401 cgtaaccgta attcattaag cgttgataac ggcgttccag taaatcctct ttattaagtt
     8461 gatctaaccc tgccaaatct tcaacaatac gctgtttaag gttttgggcg atttgttcaa
     8521 cattgcgatg agcaccgcct aagggttccg gcacgatgtt atcaatcagc tcaagctctt
     8581 ttaaacgagg ggcagttaaa cccattactt ctgctgccgt tgaggcttta tcggcacttt
     8641 tccacagaat cgaggcacag ccttcaggtg aaattaccga gtaagttgaa tattgcaaca
     8701 tattgacctt atcgcccaca ccgatcgcta atgcaccgcc cgagccacct tcgccaatta
     8761 ccgtacagat tactggcacg gaaagttgag acatttcacg caggttacgg gcaatcgctt
     8821 ctgactgacc acgctcttcc gcaccaatgc ccggataagc tcccggtgtg tcgataaagg
     8881 tgatgattgg catattaaag cgttctgcca tttccattaa acgtaacgct ttgcgatagc
     8941 cttcaggagc aggcatacca aagttacgtt tcactttctc ttttacggta cgacctttct
     9001 gatgaccgat aaccatcacc ggacgtccgt ccagacgggc aataccaccg acaatcgctt
     9061 tatcatcggc aaaggcacgg tcgcctgcca gttcgtcaaa ttcggtgaaa atatgctcaa
     9121 tataatctaa agtgtacggg cgattggggt ggcgtgccat acgggaaatt tgccacgcat
     9181 ctaaattagc aaaggttttc ttggttaatt cctcgctttt cttttgtaaa cgcttgattt
     9241 catcatcaag attaattttg tcatcttgct cgctgactgc tcttaaagac tcgatcttgg
     9301 cttccaattc agcaatcggc aattcaaaat ctaaaaattc ttggctcatt ctattttcct
     9361 ttttatgggc aaaattatgg ggcattatcg cttatcagtc ggttattgtc cattttcaat
     9421 tacgctaaat tgacccatcg tacctctatc acgcagcata aaatcgctca cgccaaaggt
     9481 aaatggcagt tgctcagggg cagtattatc aaagcgaacc aacagcgtga tttcttgctc
     9541 cgcctcgagc caaacggtgt cccgccacgc aagttgtttg atagggtatt gcttgcggtt
     9601 tagggtttca ataatgaatt ttgcaccttg tagcgtaaat ccgaccgctt gtgtgctatg
     9661 taaataccaa cgctcaacgc tgcctttttg cgcggtaaaa tcaatgcgtt ttgggtcaaa
     9721 ccgcttttgg ttgattaaat aatcagccgg acgaatggca aaacgtctct cttggctgat
     9781 tttcaggtta aattcctcta agttgaaagc cggtaaactc ggtttattat tcaataccgc
     9841 tgccattcct tcagggcgaa gctctaaaat cacgttatca ttcaattcgt cgttgtcagc
     9901 aaagacctgc ccgattttgt aaaaaatatc tcttttttga ccgcttatca gcgataccgc
     9961 tttcccttcg cttaaatcga ccaacacttc caccctttca ctcggtgcaa gttgaaccga
    10021 ttcggtttca agtggctctg ccagcattcc taagccggtg gcgattaggt acaacggctg
    10081 ctcgttatct aagcgtaatt cataagcacg ggaaagtgag gcattgacga tccgcaatct
    10141 gacccagcca cgaggcacgt taaaataagg cgattcctgc ccgttgacaa ataatcgctt
    10201 accgaaaaat tgtgaggtgt ttttatctaa cacctgtacg ccgtctttgt tgagcagctg
    10261 gtcttgcaga attaacggaa tgtcgttcac gccatattta ttcggtaaag tggctttttt
    10321 gctctgttca tcttcaatca tccacaagcc ggctaagcca cgatacactt ggaatgccga
    10381 gttgagcatt gtatcggcgt gataccaaca agtacaagcc ggttgattga tagaaacaat
    10441 cggcgaccag ctacttttgg ggtcaaggga acgatgcacc gtgccaatca tctcacttga
    10501 ggcttgcaat ccttgaatat tcattgagat tttttgcggt aaattattga gataagttaa
    10561 tttgacaaaa tcccccgatt ttacccgtac ggttggggca agatattgcc cgttcacacc
    10621 ccatacatca accaatttgc ctttatcaaa ttgggtttgt gcggggcgta aatccaaccg
    10681 aaccggcttt cctcgcccaa tatccattaa aggcggaatg ttcagttgcg gtcgctctgc
    10741 tgctaatagc ggtgttggca ctgttgcaaa tccagccgca agggcagagc cttgtaaaaa
    10801 ttggcgtcgg gtgatctgtt ttttcatatt aggcgttttt tgcagtgttt tctaactgtt
    10861 cgacttcttg attaagttgt tcaaattttg ccaacataat ttgatggcac ttttccatca
    10921 gttctttgac gttttcacgg gaatagcctg aagtatcaat cggatcaagc atttcacaga
    10981 ttactgtgcc gttatttgaa cggttcaaat ccactttatt gtgtaaatta gagcaaacta
    11041 ccggcacaat cggcacgccg gcagaaatgg ctaaatggaa tgcaccggtt ttaaatggca
    11101 gtaaaccacg cccacggcta cgagtacctt ccgggaacat ccacaccgac acattgcgtt
    11161 ctttcacgat ttgccctgct ttattcattg tttcaatcgc actggaacgc ttttcacggt
    11221 gaataaaaat attgccggtt gcccagtaaa ccaaaccgaa aaacggaatc caaatcaggc
    11281 tttttttgcc gatactcacc gtcttttctg ccaccattga ggaaatcgtt accatatcgt
    11341 aattgttttg atgattgccg atatagacaa ccggatagtt aatttccggc tttttgcggg
    11401 taattaattc caacccgact aatttatgca aagcaccaaa ccaacgagct accacaccca
    11461 cgctacttgg gtgacgtaaa cgcagtaacg cataaatagt gccaaaaata gaaatgaaaa
    11521 tagcggcaag ggcaacaatt aaaatacgaa aaatttttaa cataatggaa taaccttaaa
    11581 aataaattgt ctaggagtat agcaaaataa ggttattttc taaaggctat ccacattaaa
    11641 ttgatagttt cctattttgc aaaaaatcgg tatatttaaa ccgcttgttt atttgataag
    11701 gagaaaaaaa tgagtaaagt gactttagca ggaagcccga ttgatgttgc aggcacattt
    11761 ccacaaaaag gcgatgtggt tgccgatttt accttagtca acagtgattt aagtgatgtt
    11821 tcgctttccg attttgatgg caaacgcaaa gtgttaaata ttttcccaag tattgacacc
    11881 ggcatttgtg ccacttctgt gcgtgtgttt aatcaaaaag cggctgatgt agcgaatacg
    11941 gttgtccttt gtatttcagc ggatttacct tttgcccaag cacgtttctg tggagcagaa
    12001 ggaattgaaa atgccaaagt attatccagt ttccgtcatc gtgatttaca caacaaactg
    12061 ggggtagata ttatttcagg tccgttggca ggcttaactt cacgttcagt aattgtgtta
    12121 gatgaaaaca acaaggtatt acacagcgaa ttagtgccgg aaattaaaca agagccggat
    12181 tatgaggcgg cgttagcggt attataattt gcagaattat gctggaaaat aaccgcttgt
    12241 aaagcaacaa aaagcccgtt gattcaattc aacgggcttt gtttttagtg attatttctt
    12301 acgagagtgt aagccttttt tctcaaggtt acggtaaatc aaccattgct gtgcaatcgt
    12361 gattaagttt gaggttaacc agtaaagcac taagcctgat gggaaccata agaagaacac
    12421 ggtaaagata accggcataa aggtcattac tttttgttgt accgggtcag ctaccggtgt
    12481 tggcgacatt ttttgtaaca agaacatcga accacccatt aataaaggca aaatgtagta
    12541 tgggtcttgt gccgataagt cttgaatcca gccgaagaaa ggtgcgtggc gtaattctac
    12601 cgcttccata aatgtccaat ataaagcaat gaaaatcggc atttggatta aaattggtaa
    12661 gcagccaccc attgggttca ctttttcttc tctgtagagt ttcatcatct cttggctcat
    12721 acgttggcgg tcgtcgccga aacgttcacg catttcagta atgcgaggtt gtaacatacg
    12781 catttttgcc atcgaggtgt attgtgcttt ggttaatggg taaagaatgg ttttcactac
    12841 aatagtgaca ccgataattg ccaagcccca gttgcttacg attttttgaa ttgcggttag
    12901 taaccagaaa agcggtttag cgataaacca cgcccagccg taatctacgg ttaagtctag
    12961 gtgatttgct gattcgccca tttctttctg atctttagaa cctgtccaaa gtttgctatt
    13021 taaattagcc tctgaatttg gcgcaatcgt agttaaaggg ccacggtaac cgatagttgc
    13081 taccccatta ttggtgcgtg aataaaggct gttatccgca tcttggtttg gcacccaagc
    13141 agacacgaaa tagtgctgta ataccgcaat ccaacccgct ttggtgtcca cgcttaagtt
    13201 ggctttttcc atatcttgga aactgtattt tttgtagttg gtttctgaag aagaataagc
    13261 cccgccggtg taagtcggca tggttaaatt gccggaactt tcaactatag agtgttttaa
    13321 ttgcccgtaa ggctgaactt caatcgcttg tgcagtatta tttttgatat tgaagtttac
    13381 cccaacatcg tagctaccac gttttagcgt gaaagttttg gtgtaaacca caccctcttt
    13441 ttcaaaggtt aatggtacag aaatttcatt ttgcccttcg gctaatttga agctatctgc
    13501 cgttaccgca tattgtgggc gaccggcatt ggtatcaatc ccgtttttac ccactaaacc
    13561 gctttgagca acgtagattt tgtcgccgtc ttgctgtaat agtttaaatg gcgtgttaga
    13621 gtgtaattca gcattgtgtt ttaacaaatc tgagccgatg acatcaccgc ctaaggtatc
    13681 aatagtcaga cgtaatacat cgctttccac ggtaatggtt ttaccttgcg tgatgctatc
    13741 tgcgattgga ttattggcat tggaagcaga cggaagatca cccgcttgtt gggtttgtgc
    13801 tgccacttga gcttgttttt gtgcttgaat ttcaggatca aaatcttgtt gccattgtgt
    13861 aaaaatcaaa atagacacaa gaaataaacc cattagcagt aagccacgat tattcatgtt
    13921 ggaattctct tgttagtaat ggataaaaag aaaggtattt tataataggt tagcttgttt
    13981 tccaaacgcc ttttatgaac aagcggtcgg attttccaag ttttttgcaa aattttcgga
    14041 gaatttgacc gcttgtggag aataagaaac tagcgtttat ctaaggtttt ggtggaaagg
    14101 cgagcaactg cacacaggtt accttgttcg tctttaatgt cgatattcca aacctgtact
    14161 tcacgcccta atttcagcgg tgtagctttg gcaatcgctt ttgtgcctgc cggaatcgat
    14221 tttaaatggc tgatgtttag ctccattccc accgcaattt gatggggttc acacaccatt
    14281 aacgcccctg cattggcagt agtttccgcg agtgctgccg atacaccgcc gtgcaatacg
    14341 ccaaacggct gttgagtgcg ttcgtccacc tgaagctgtg cttcaatcca atcttcaccg
    14401 atagcggtaa attcaatccc taagtgtgac accgccgatt tttggctgag tgtgtttaat
    14461 tgttcacaag ttgctgtttg cttccaaatg gtcattatta tttcctgtct aataaaaaag
    14521 ctgtctattt agacagcttt cattatctct ttgagcgaaa catactacgc caatagtaca
    14581 ttgtttggtc gcccatatta ccttaagcca tatagcacta aggaggtgat ttatgtgaga
    14641 aaatcagaag ttttctttct ggttgcgttg ctaatattat tagcaacttc cgctagcatt
    14701 aaagtactca ccatacttga tgtgctagtt tggttattcg ctagataacc taaaatcaga
    14761 cagaggcagg ctggttacct gcctcgcttt ttattctaag tacttttagg ttacatttca
    14821 accttaaatc acgtccagca acgcttgaat tgggtgttta atgccttgtt gttcaaaacg
    14881 tttgacttgc gagcggcagg agtagccggt tgctaggcaa cgctcaagcg gtttattttt
    14941 taatttaatt tgccatgatt gctgataaat cgctttcgac atttcaacgt gtttggtttc
    15001 gtgtccgaac gtgcctgcca ttccacagca accgacattt tcattgagta aggtttcacc
    15061 aaaatgggtg aaaatagctt gccactcttt cattgagctt ggcaaggcgg tggattcggt
    15121 gcagtgagca aataaatacc acggcaagcg gtcggaattt gccgattttt tgcaattttc
    15181 cagctcgccg tttttaatca cttcccttaa ccattcgtgt gccaataaga ctttgaaatc
    15241 cccccgagct tctttgagga tctctttgta ttcttcacga taaagcaaag ttaaggcagg
    15301 atcgacagcc accatcggta gccccaattt cgccacacgg tttaaaaaat cggcttggtt
    15361 tttcgctgtt ttcgcaaatt tatgcaaaaa gcctttaacg tgttgtgctt taccgcttgg
    15421 cttgaatggc aacacaatcg gcttaaagcc taatttttta atgagagcga taaagtctgc
    15481 caccactttg gcatcgtaat aagaggtaaa cggatcttgc acaataaaca aggttttgca
    15541 attttttgca gaaaaatcac cgcttgtagc ttgttgttca aggctttcta agctctcgcc
    15601 ttggtagccg acttccacca actgatgttg cagatttggc actgacaatg ccggcaaata
    15661 ggtcattcca atggttttgt ttgcagcttt ttcggcaaaa gttgaggtgc tgaaaaagtt
    15721 aaaaaaacgt ggttgtttcg ccattaaagg ggcgataaat tctaagtttg agaccacata
    15781 atctttcagt ggtcgcaaat agcggctgtg gtaaagctcg ttaaattgcg atctgaacgt
    15841 cggtacgtca attttgattg ggcattggct ggcacaggct ttgcaggcaa ggcaggtgtc
    15901 catcgccgct ttgacttcgt gtgaaaaatc atactctttg tttttattga gcgtgttgcg
    15961 aatttttgca acaaaatcag ctaatttgac cgcttgtttg cgaggtttga agatcaaatc
    16021 gtccggcgaa acgttttgtt cggtaagtaa tctgagccat tcacgcacaa gagtagcccg
    16081 ccctttcggt gagtaaagac ggttgcccga gactttcatt gaagggcaca tcgtgctgtg
    16141 tacatcaaag ttaaaacata gcccgttgcc gttacaattc attgctcctt taaattcttc
    16201 tcgcacttgg attggaattt ggcggtcaaa atcggctcgc atttgtgagt caatcgggta
    16261 gagcgaggtt tcgctttcta atggtgtaca aattttacct gggttcaagc gattgtacgg
    16321 gtcaaataag gttttgatgt aacggagttc ttgccacaaa gtttcgccaa agaaacgttc
    16381 gccgtagtaa gaacgcatac ctttgccgtg ttcgccccaa atcaagccac cgtatttggc
    16441 ggtgagttcg actacttggt cggaaatttg cttaaaggtt tccacttggg ctttgtcgca
    16501 taagtcaaga gcagggcgaa cgtgtagcac gccggcatca acgtggccga acattccgta
    16561 aggcagatta tagcgatcta ataaagctcg aaattccacg atgtaatcgg caaggttttc
    16621 cggtggcaca gcggtgtctt ctacaaaggc gatcggtttt gcccagcctt tggcattgcc
    16681 tagcaggcct acggcttttt tccgcattgc gtagattttc tcgatagaat ttacatcact
    16741 cgtgagttgg tagccgataa tcccggcttc attatttgcc attttttgat caaggctttg
    16801 gcagagtgct ttcacttggg tttcaatttg agtctgatcg cttgaggcat attcaacaat
    16861 gttaatccct aaaatcgggt tggctgggtc ttcggttaat aaatctgaca ccgaatgcca
    16921 gacgatatct tgcttggcaa gattgagcac tttggaatca accgtttcca ccgataaggc
    16981 ttttgcctct aacataaaag gagcggagcg taaggcggca tcaaaggaat tatatttaat
    17041 attaattaag gtgcgatatt tgggaatcgg cagtaaattc agtttggctt cgcaaataaa
    17101 ggcaagcgaa ccttcagaac cggttaaaat acgggtaagg ttaaattcgc tttcaccatg
    17161 gttaaacaca ttttttaaat catagccggt aataaaacgg ttaagctgag gcagttcgtt
    17221 cagcactttg gggcgtaatg ttttgcaacg gttgaaaatt tcacggtgca aggttttgcc
    17281 gagagcggag agatttaacc cttcaatatg tgcaaaaaaa tcggcagatt tgaccgcttg
    17341 tgtctctaaa atatcgccgt taataagcac agatttgatg gcaagaatat gatcagatgt
    17401 tttgccatat tgcaaagaac cttgcccaga ggcatcggtg ttgatcattc cgcctaaagt
    17461 cgctcggtta ctggtagaaa gttcggggga aaagaaaagt ccatgtggtt ttaaaaattg
    17521 attgagctgg tctttcacca cgccagcctg cactcgaacc caacgctctt ccacattcag
    17581 ttccaaaatc tgattcatat ggcgggagag atcaacaata atattattgt taagagattg
    17641 cccgttagtg cctgtgccac cgcctcgtgg agtaaaagtt aaatgttgat attctggctt
    17701 ttgggcaagt ttggttagaa ttacgacatc agaaacggat ttcggaaaca gaatagcttg
    17761 cggaatttgc tgatacacgc tgttgtctgt tgccagtgaa agcctatctg cataatttga
    17821 tgcaatttcc ccactaaaat gctgattgac gagttcagtt aaataggatt gggtggcttt
    17881 atccagttgc ggtacttcag agagtctagg tatcataagc tgtgtttggt tttttataat
    17941 aaaagcacta aattttgctt atcttagcaa tttttctaaa aattgggaat ggaatatcaa
    18001 tttgattaaa tagtgttcga aaaatggttt tttggttaaa atatagacaa attattacgt
    18061 ttctatacat ttcatcagga aaaaacgatt gatttttcga aaatgaaacc acataatgac
    18121 aa
//
LOCUS       DANLRW010000047        17652 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.047, whole genome shotgun sequence.
ACCESSION   DANLRW010000047 DANLRW010000000
VERSION     DANLRW010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17652
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.047"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            160..1293
                     /gene="carA"
                     /locus_tag="PXA71_001329"
     CDS             160..1293
                     /gene="carA"
                     /locus_tag="PXA71_001329"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HDL5105441.1"
                     /translation="MFKPAILVLTDGSVFSGKSIGADGHTIGEVVFNTAMTGYQEILT
                     DPSYTKQIVTLTYPHIGNTGINLEDKESPNVCASGLIIRDLPLLHSNFRASSSLSDYL
                     IQQNIVAIADIDTRRLTRILREKGAQAGCILVGDATEENIANALAFANSFGSMAGKDL
                     AQSVTCNELYKWTDGEWQLGKGYVPQQQTEFHVVAYDYGVKHNILRMLAERGCRLTVV
                     PAKTSAEAVLALNPDGIFLSNGPGDPEPCDYAITAIRKLLETQKPIFGICLGHQLLGL
                     AAGGKTKKMVFGHHGANHPVQDLDSQKVLITSQNHGFEVDESSLPSNVRVTHRSLFDG
                     TVQGIELTDRPAFSFQGHPEASPGPNDVAYLFDRFVSEMKKVK"
     gene            1396..4602
                     /gene="carB"
                     /locus_tag="PXA71_001330"
     CDS             1396..4602
                     /gene="carB"
                     /locus_tag="PXA71_001330"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDL5105442.1"
                     /translation="MPKRTDINTILIIGAGPIVIGQACEFDYSGAQACKALREEGYKV
                     VLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILPTMGGQTALNCALDL
                     SKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPKSFVCHSFEEALAAQE
                     QVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQSVLGWKEYEM
                     EVVRDRADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIG
                     VDTGGSNVQFAINPANGEMIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLNE
                     LRNDITGGLIPASFEPTLDYVVTKIPRFAFEKFANADDRLTTQMKSVGEVMAMGRTFQ
                     ESLQKALRGLETGICGFNLLSEEPEKIRRELANPGPNRILYVADAFGAGFSLEEVHHY
                     SKIDPWFLVQIQDLVLEELALEKKQFSDLDANEIRRLKRKGFSDKRIAQLTKVSEKMV
                     RDYRHTYAILPVYKRVDTCAAEFASDTAYLYSTYEEECEAKPSDRKKVMILGGGPNRI
                     GQGIEFDYCCVHASLALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIV
                     RVENPWGVIVHYGGQTPLKLANALSDAGVNIIGTSADSIDAAEDRERFQQILNTLGLK
                     QPANRTARNALEAVALANEVGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSN
                     DSPILLDHFLNNAIEVDVDCICDGENVLIGGIMQHVEQAGIHSGDSACSLPAYSLSGH
                     VLDEIRKQTNAMAFALGVKGLMNVQFAVQNEVVYVLEVNPRASRTVPFVSKATGRPLA
                     KIAARVMAGETLADLNALEEIIPSKFFVKEAVFPFIKFPGVDTILGPEMRSTGEVMGI
                     GNTFAEAFFKAQLGAGERIPKVGKVFMSVIEEHKPALIYIAKRFQEQGYGLCATFGTA
                     NFLRQHGIAVQTVNKVREGRPHIVDAIKNGEIALVINTVSGEPEVIADSHSIRRTALQ
                     QRVPIYTTLAGADAISYGVKHINEFDVYSVQELEQKAN"
     gene            complement(4677..5468)
                     /locus_tag="PXA71_001331"
                     /pseudo
     CDS             complement(4677..5468)
                     /locus_tag="PXA71_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072249.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
     gene            5671..6669
                     /gene="yiaK"
                     /locus_tag="PXA71_001332"
     CDS             5671..6669
                     /gene="yiaK"
                     /locus_tag="PXA71_001332"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HDL5105443.1"
                     /translation="MRVSYEELKAQFKRVLLARNVREEIAEECATVFADTTQAGAYSH
                     GVNRFPRFIQQLENGDIVPEAVPTKVLSLGAIEQWDAHQAIGNLTAKKMMDRAMELAS
                     ENGIGVVALRNANHWMRGGSYGWQAAEKGYIGICWTNALAVMPPWGAKECRIGTNPLI
                     IAVPTNPITMVDMSCSMYSYGMLEVHRLAGRQTFVDAGFDDDGNPTRDPATVEKNLRL
                     MPMGFWKGSGLSIVLDMIATLLSNGESTAAVTEDKDDEYCVSQVYIAIEVDRLIDGKT
                     KDEKLNRIMEYVKTAERADPDVAVRLPGHEFTQILADNKANGIPVDDTVWAKLQAL"
     gene            6794..7159
                     /locus_tag="PXA71_001333"
     CDS             6794..7159
                     /locus_tag="PXA71_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDL5105444.1"
                     /translation="MFFGHISQVKANRYPPAIQIALNYLKNTDFDAMEAGVYELKGRQ
                     IYVQVLDLNTKSKHEFQPEVHRNYLDVQYLHRGKEIMAAAVDTGTNPIAMEYNPERDI
                     QYYQSVANENEFRCVEGNF"
     gene            7223..7702
                     /locus_tag="PXA71_001334"
     CDS             7223..7702
                     /locus_tag="PXA71_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter small permease"
                     /protein_id="HDL5105445.1"
                     /translation="MKALAQLVGKLLEILVVVILSAMSILVFVNVVLRYGFNSSISVT
                     EEVSRYMFVWLAFLGAVLAFSENQHVKVTMLTDKLSPTARNILSVVTDLAMLFCCYLI
                     VDGSWIQFNLNLNNFAPISGLPQGITFLASTVAGVLIGLLIIARIVATVGVIAKGEK"
     gene            7703..8980
                     /locus_tag="PXA71_001335"
     CDS             7703..8980
                     /locus_tag="PXA71_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HDL5105446.1"
                     /translation="MTVVIFLSVLLGSILLGIPVAFALLVCGVALMLHLDLFDAQILA
                     QQIVSGADSFSLMAIPFFILAGEIMNEGGLSKRIIDLPMKLVGHKRGGLGFVAILAAM
                     IMASLSGSAVADTAAVVAMLLPMMKTTGYPIDRSAGLIGTAGIIAPIIPPSIPFIVFG
                     VASGVSITKLFLAGIFPGIMMGICLAALWWWQAKRLDLMTFSKATKEELCISFKNSIW
                     ALLLPVIIIGGFRSGMFTPTEAGAVATFYALIVSLFVYREMKFKDLYKVVLAAAKTTA
                     VVMFLVAAANVTGWLITVAELPMMLTELLEPLIESPTTLLLVIMLAVFIIGMVMDLTP
                     TVLILTPVLMPLVEEAGIDPVYFGVLFILNTSIGLITPPVGNVLNVITGVSKLPFDQA
                     AKGVMPYLVMMICLLLLFVFFPSLVLVPLSWMQ"
     gene            9083..10069
                     /locus_tag="PXA71_001336"
     CDS             9083..10069
                     /locus_tag="PXA71_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5105447.1"
                     /translation="MKLFNLKTLFALVAGVAVMSGSAMAETSLRFGYEAPRSDTQHIA
                     AKKFDELLAAKTKGEIKLKLFPDSTLGNAQTMISGVRGGTIDIEMSGSPNFTGLEPKL
                     NVIDIPFIFKDREHVYKVLDGEVGQGLLKDLEAQGLKGLAFWDVGFRAFSNSKHPVTK
                     PEDIKGLKVRTNQNPMYIQAFTLLGGNPVPMPLSELYTALETRAVDAQEHPIGIFWSA
                     KLFEVQKHLSLTNHGYTPLIVVMNKAKFDGLAPELQTALVEAAKEAGQFQRDLNVKNE
                     KEIIEKLRKQGIEVIEQVDNAPFKAAIEAEVRKAFVEKHGDELLKKVDALAQ"
     gene            10143..11126
                     /locus_tag="PXA71_001337"
     CDS             10143..11126
                     /locus_tag="PXA71_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter substrate-binding protein"
                     /protein_id="HDL5105448.1"
                     /translation="MKLFNLKTLAAFVAGFALFSTAQAETSFRFAYEAPRSDTQHIAA
                     KKFNDLLQEKSQKGLKLSLFPDSTLGNAQTAISGVRGGTIDIAMSSSSNFTGLEPKLN
                     VIDIPFIFKDRDHAYKALDGEIGQGLLTSLEAHGLKGLAFWEVGFRAFSNSKHPITKP
                     EDIKGLKIRTNQNPMYIQAFSILGANPVPMPLSKLYTALETKAVDAQEHPIGIFWSAK
                     LYEVQKYFSFTNHGYTPLIVAINKAKFDALPAEQQTALVEAAKEAGKYQRQLNLENEQ
                     KIIDSLKKAGIEFVDNLDTTPFKDAVSAETRKAFIEKNGDGLVKAIDALAK"
     gene            11257..12741
                     /locus_tag="PXA71_001338"
     CDS             11257..12741
                     /locus_tag="PXA71_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5105449.1"
                     /translation="MQHIIKRFGSHTAVNDVSLDIHSGEIVALLGENGAGKSTLIKIL
                     AGIYDRDEGDILFHNQKIQSAHAIEKGNKKPIAFIHQDLGLIEWMTIAENMAFVMGFP
                     RKFGLIDWAKVREQSQKALDFVGIKLSADTRVFDLSRTEKALLAIARAIAVNAEILVL
                     DEPTASLPASDVEHLFTVLNRLRSQGVGMIYVTHRLDEVIAISDRILVMRDGFPVAEG
                     QTKLYDVKGLVKAIVGEESRGRQRVDLPTDTPEILSLQNVVVGDTGPVNFRLHKGEMI
                     ALAGLRGAGQEEIGRLLFGERTLDKGEIQLDKRSYSAKDPQDAIAKGVALVAGDRTRE
                     SVFMSMTTSENLFINPVLSGHSPLKRYSRREEWGESWYKFQLFDIRPKNLFIDASALS
                     GGNQQKIVLARWMHLNTPVLILEDPTAGVDVGARAEIYDLLNKALAEGVAIIVISTDF
                     EEIAHLCNRALVFNRGEIAGELLNEEVTFANLLALASDSQSKKQ"
     gene            12936..13982
                     /locus_tag="PXA71_001339"
     CDS             12936..13982
                     /locus_tag="PXA71_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5105450.1"
                     /translation="MAQTNIKSTALEQPVSIARDGFMAWFSQMSTRYGLLWLCVLLVI
                     IFSLTTESFASMLTLNAILESKSKIALLALAATTTMIVGKIDLNVGFGIVLWHILVIT
                     LQVQYGFSWYMAILIVLVIAALYGLLNGILVALADIDSFVATLGSGTVLYAVALWHSG
                     GRQIVGDLPDEFIALNSTEIFGIPISAFYVLAVAIVMWLVTEHTPTGRCMYAVGGNPT
                     AARLNGINIKKYTIVPFIVSSVITAFTGVLISAQQGVGQASVGMDYLLPALVGAFLGS
                     TTIRPGRINVWGTVVGIAILAIGISGIQQFGGAFWVEPLFNGATLLLSITIAGYAQRK
                     RLLNQKAVQKKSTN"
     gene            13995..15104
                     /locus_tag="PXA71_001340"
     CDS             13995..15104
                     /locus_tag="PXA71_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5105451.1"
                     /translation="MKKAFRTTLTAIATLTAIAFGNNAFANDDPFVQEAKQLVAAATA
                     KQEKWDGPTTGPQLQKEKTVIFIASDMKNGGVLGVIDGMKEAVGVTGWKLDVLDGAGT
                     VNNQLAALNQAIARKPDAIVIGGWNPNVAKIPLQKATKNGIKLAAWHATPEPGAIDKY
                     GIFYNVTSDSDEIARLSAMLAVAESNGKAKAIILTDSLYEIALRKANVMKEVIEKCKE
                     CKVLEFIDTPLADTSSRMPNLTFSLLQKYGDDLEYALAINDLYFDFMAPSLRTAGKDK
                     PFSISAGDGSVTAYQRIRNGDKQFATVPEPLNLHGWQLVDELNRAFANEKPSGYITPA
                     HLVTKENVAFDGGENNLYAPQNGYKGAYKAIWGVK"
     gene            15209..16099
                     /locus_tag="PXA71_001341"
     CDS             15209..16099
                     /locus_tag="PXA71_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HDL5105452.1"
                     /translation="MSNKFIPKISNPRFNELVGNTFELEELFDKAIWAEGPAWSKPQQ
                     ALYFSDVKGCTMYRWTEQDGTQVFRQPSYFSNGNAFDANDNLITCEHGNRGISLTTPS
                     GEYRFLVGQLDGKRLNSPNDVVVKSDGIIWFTDPPYGILSDNEGKQSPSEIIGCYIYC
                     YDPKTDKLNIATFNTMRPNGLAFSSDEKQLFVADMSSVEFDEDGLHHLVVFDVDGNKL
                     KNRRDVAEISPGIPDGFRIKQNGVIFCSCEEGIIALLPDGTELGRFVLGKLTSNCSFG
                     DDEQTLFITCSNSVYRLTIK"
     gene            16171..17640
                     /locus_tag="PXA71_001342"
     CDS             16171..17640
                     /locus_tag="PXA71_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HDL5105453.1"
                     /translation="MDNKMNYTLGIDCGGTFIKAALFDTQGNIQALHRENVSVISEQA
                     GYAERDMSQLWAICAEVVRSTIEKSGVNPADIKAVGISAQGKGAFLLDKQNRPLGRAI
                     LSSDQRSLEIVKQWQAEGIPQQLYPITRQTLWTGHPVSILKWVQQNEPERYAQIGAVL
                     MSHDYLRFCLTGELHCEETNISESNLYNMEKGEYDQQLADLLGMPDVLEKLPPVIEPN
                     KISGYVTENAAKLTGLAVGTPIVGGLFDVVSTARCANLDDETKLNAVLGTWSVVSGIT
                     DHIDASQSLPFVYGRYAEAGKFIVHEASPTSAGNLEWFVNQWKLDYVKINQAVAQLPP
                     AASSVLFVPFLYGSNAGLGMQAGFYGMQAHHTQAHLLQAIYEGVLFSLMSHLNRMFIR
                     FPKADVLRVTGGPVKSKVWMQMLADLTGMRLEIPQMEETGCLGAALMAMQGVGLDISQ
                     VQALNNEMQVFEPNPENYAAYQTKYQRYQKLTEALNTMI"
BASE COUNT         4958 a         3865 c         4148 g         4681 t
ORIGIN      
        1 gcatatattt tcacttccga gtagaaaatg aaataaaaaa agaagaaaga aataggcaaa
       61 ataactaatt tttacttgaa tgcaaacgtt tgcttgatta aacttagtcg cctacttcta
      121 aggctacaca gataaaattt gatgattagg agtaaaacaa tgttcaaacc agcaattctg
      181 gttctcactg acggttctgt cttttccggc aaatccattg gtgctgacgg tcacactatc
      241 ggtgaagtgg tatttaacac tgcgatgacc ggttatcaag aaatccttac cgatccttct
      301 tatactaaac aaatagtcac cctgacttac ccccacattg gcaataccgg cattaattta
      361 gaagataaag aatcccccaa tgtttgtgcc tccggcttaa ttattcgtga tcttcctctt
      421 ctccatagca acttccgtgc gtcctcctca ctttcagatt atctcattca acaaaacatt
      481 gtcgctattg ccgatattga tacccgccgt ttaacccgaa ttttacgcga aaaaggggca
      541 caagccggtt gtattttagt aggcgatgcc acagaagaga atattgctaa cgctttggca
      601 tttgccaaca gtttcggttc tatggctggg aaagatttgg ctcaaagtgt cacctgcaat
      661 gaattatata aatggacaga tggtgaatgg caattaggta aaggttatgt accgcaacaa
      721 caaaccgagt tccacgtagt tgcctatgat tacggtgtaa aacacaacat tttgcgaatg
      781 cttgccgaac gaggctgtcg cttaaccgtt gtgccggcaa aaacctctgc tgaagctgtg
      841 cttgcgttaa atccggacgg tattttcctt tctaacggcc cgggggaccc ggagccgtgc
      901 gattatgcca ttaccgcaat ccgaaaatta ttggaaacgc aaaaacccat tttcggcatt
      961 tgcttagggc atcaactttt aggtttagcg gcaggcggta aaaccaaaaa aatggtgttt
     1021 ggtcatcacg gagctaatca cccggtacaa gatttagaca gccaaaaagt gctcatcacc
     1081 agccaaaacc acggttttga agtagatgaa tccagcttac catctaatgt gcgagtgact
     1141 caccgctcac tgtttgacgg cacggtgcag gggattgaac tcactgatag accggcgttt
     1201 tcgttccaag gtcacccgga agccagcccg gggccgaatg atgttgccta tttatttgac
     1261 cgatttgtca gtgagatgaa aaaagtgaag taaggacgta cctatgtgtg tccatcaagc
     1321 ggtcgaaatt tgcaaaaaac ttaccaaaaa tgaccgcttg tagcctgaaa taaacgagat
     1381 aaaagagagc ccaaaatgcc aaaaagaaca gacataaaca ctatcctaat tatcggtgcc
     1441 ggtccgattg tgatcggtca agcgtgtgaa tttgactact ccggagccca agcgtgcaaa
     1501 gcgttgcgtg aagaagggta taaagtggtg ttggtgaact ccaaccctgc aaccattatg
     1561 accgacccga atatggcaga tgtgacttac attgagccga ttgaatggaa aacggttgaa
     1621 aaaatcattg aaaaagaacg ccctgatgcc attttaccga ctatgggcgg gcagacagcg
     1681 ttgaactgtg ccttagatct ttcgaaaaac ggtgtgctga aaaaatataa tgtagagctg
     1741 atcggagcta ccgaagacgc gattgataaa gccgaagatc gtggtcgttt taaagaagca
     1801 atgactaaaa tcggcttgaa tacgccaaaa tcattcgttt gccacagttt tgaagaggcc
     1861 ttagcagcac aagagcaggt tggctttcca accctgattc gcccctcttt cacgatggga
     1921 ggctccggcg gtggtattgc ttataatcga gatgaattta tcgccatctg cgaacgtggt
     1981 tttgaagcct cgcctactca cgaattactg attgaacaat ccgtactagg ctggaaagag
     2041 tatgaaatgg aagttgtgcg tgaccgtgcc gataactgca ttatcgtctg ctcgattgaa
     2101 aacttcgacc cgatgggtgt acacaccggc gactccatta ccgttgctcc ggcacaaacg
     2161 ctaaccgata aagagtatca aattatgcgt aacgcttcgc tggcggtatt gcgtgagatc
     2221 ggcgtggaca ccggcggttc aaatgtgcaa tttgcgatta accctgcaaa cggcgagatg
     2281 atcgtcattg aaatgaaccc tcgtgtgagc cgttcttctg cactcgcatc taaagccacc
     2341 ggcttcccga ttgccaaagt tgcggcgaaa ttggctgtag gctacacact caacgaattg
     2401 cgtaacgaca tcaccggagg gctgattccg gcttcattcg agccgacttt agattatgtt
     2461 gtgaccaaaa ttccacgctt cgcctttgaa aaatttgcca atgcagacga ccgattaacc
     2521 actcaaatga aatcggtagg cgaagtaatg gcaatgggaa gaaccttcca agagagttta
     2581 caaaaagcct tgcgaggctt ggaaaccggc atttgcggct ttaacttgct ttccgaagag
     2641 cctgaaaaaa tccgccgtga acttgccaac cccggaccaa accgtatttt gtatgttgcc
     2701 gatgcctttg gagcaggctt ttcattggaa gaagttcacc actattctaa aatcgacccg
     2761 tggttcttgg tgcaaattca agacttagta cttgaagaat tagcgttaga gaaaaaacag
     2821 tttagcgatc tagatgctaa cgaaatccgc cgcttaaaac gcaaaggctt ctcagacaaa
     2881 cgtatcgcac agcttaccaa agtcagcgaa aaaatggtgc gggattaccg ccatacttac
     2941 gctattctac cggtgtataa acgggtagat acctgtgcag ccgagtttgc ctcagatacg
     3001 gcttacctct attctactta cgaggaagag tgtgaagcca aaccgtctga tcgcaaaaaa
     3061 gtgatgattt taggcggcgg accaaaccgt atcgggcagg ggattgaatt tgactactgc
     3121 tgcgttcacg cctcgcttgc tctgcgtgag gcaggttatg aaaccattat ggtgaactgc
     3181 aaccctgaaa ccgtttccac cgatttcgac acctccgacc gcctctattt cgagccgcta
     3241 acattagaag atgtactgga aattgtgcgt gtagaaaacc cgtggggcgt gattgtgcat
     3301 tacggcggtc aaacaccact gaaattagcg aatgccttat ctgatgccgg tgtaaacatt
     3361 atcgggactt ccgccgacag cattgatgcc gccgaagacc gtgaacgttt ccaacaaatt
     3421 ctaaacactc tcggtttaaa acagccggca aatcgcaccg cccgtaatgc gttggaagcg
     3481 gtggcattgg caaatgaagt aggctatccg ctggtggttc gcccatctta tgtgctaggt
     3541 ggtcgggcaa tgcaaattgt gtataacgat gaagagctaa accgctatat gcgtgaagcg
     3601 gtatcggttt ccaacgacag cccgatttta ctcgaccact tcctcaataa tgcgattgaa
     3661 gttgatgtgg attgcatttg tgacggcgaa aatgtactca ttggcggcat tatgcaacac
     3721 gttgagcaag ccggtattca cagtggcgat agtgcctgct cactacctgc ctattcgtta
     3781 agcggtcatg ttttggacga aattcgcaaa caaaccaacg caatggcgtt tgctctcggt
     3841 gtgaaaggct tgatgaacgt acaatttgca gtacaaaatg aggtcgttta tgtgttggaa
     3901 gttaaccctc gagccagccg tactgtaccg tttgtcagca aagctaccgg tcgcccactg
     3961 gcaaaaatcg ctgctcgcgt gatggctggt gaaacccttg ccgacttaaa tgcattagag
     4021 gaaattatcc caagcaaatt cttcgttaaa gaagcggtat tcccattcat caaattcccg
     4081 ggtgtggata ccattctcgg gcctgaaatg cgttctaccg gcgaagtgat gggcataggt
     4141 aatacctttg ctgaagcgtt cttcaaagca caactgggtg ccggtgaacg aattccaaaa
     4201 gtcggcaaag tgtttatgtc ggttattgaa gagcataaac ctgctttaat ttacattgcc
     4261 aaacgtttcc aagaacaagg ctacggttta tgtgccacct tcggcactgc aaacttccta
     4321 cggcaacacg gaattgcagt ccaaacggta aacaaagttc gtgaagggcg accgcatatt
     4381 gtcgatgcga tcaaaaacgg cgaaattgcg ttggtaatca acaccgtcag cggcgagcct
     4441 gaagtgattg ccgacagcca ctctatccgc cgtaccgcct tgcaacaacg tgtgcctatt
     4501 tacaccaccc ttgcaggtgc tgatgctatc tcctacggcg taaaacatat caatgagttt
     4561 gatgtgtatt cagtgcagga attagaacaa aaggctaact aaaataaagc taaaatgaca
     4621 agcggtcaga ttttgcaaat tttttacaaa ttctgaccgc ttgtgtttgt agaggattat
     4681 ttagtaaatt tatatgctaa atcattccag cgtaattcat ttttgagttg tggtagctcg
     4741 gtattttggt tgatatggat aaactcaata ccaaaatatt cagcgaacat tcgtagcata
     4801 tcggcatcaa tatctaaact aaatacacta tgatgagcac cgccggctag aatccatgct
     4861 tgagtaccta cataaaaatt tggttgaagc ttccaaaaag catgcccaac tggtaaattt
     4921 ggcattggat ttggtgaggc gatagcgtct aaatccgcaa caaccattct aaaacggtct
     4981 cccatatcta caacggttgc attcactgct tttcccgcct tactactgaa aattaagcga
     5041 acaggatctg ccttaccgcc aatacctagc ggtcgaatgg ctaatgttga tttctctttg
     5101 gcaatagacg gacaaacttc aagcatatga gcccccaata ccacttggtt ttgttcatct
     5161 aaatcatagg tgtagtcttc cataaaggaa gaaccgtttg gtaagccata acccatcact
     5221 ttcacttcac gcacaagagc tgcggttttc caacctcctt caccaccaaa tccgtagcct
     5281 tgttccatta aacgctgaac agccaagccc ggtaattgtt taatcccatt tagattttgg
     5341 aaattatcag taaaagcttt aaatccacca ttatctaaga atgtttttaa gccgatttca
     5401 atacgagcag aatatgcgag agattctctt gctgaaccat tttcttgcaa gctatcctca
     5461 acattataca agcggtcaga ttttgcaaaa aaatgaccgc ttgttgccat ttctaaagtg
     5521 tgatctacct ctcaaattta caaaattttt tataacatat tgatttaaaa tgttttttat
     5581 atttttcctt taattgactt taatttgtct taagagtaac ttataaaacg tgattttact
     5641 atttgaaata ttgaggtatt caagatgact attcgagttt cctatgaaga attaaaagct
     5701 caatttaaac gtgttctgtt ggctcgcaat gtgcgtgaag agattgccga agagtgtgcc
     5761 actgtgtttg ccgacaccac tcaagcgggt gcttattcac acggggtaaa ccgtttccca
     5821 cgctttattc agcagttaga gaacggtgat attgtgccgg aagccgtgcc gactaaagtg
     5881 ctttcactgg gggcgattga gcagtgggac gctcaccaag ccatcggtaa cttaaccgca
     5941 aaaaaaatga tggacagagc aatggagctt gcatctgaaa acggcatcgg cgtagtggcg
     6001 ttacgtaatg caaaccactg gatgcgtggc ggttcttacg gatggcaggc ggcagagaaa
     6061 ggctatatcg ggatctgctg gacgaacgcc cttgcggtaa tgccgccttg gggggcgaaa
     6121 gagtgccgta tcgggactaa cccgttaatc attgcggtgc cgactaaccc aatcacgatg
     6181 gtggatatgt cttgctcaat gtactcatac ggaatgttgg aagtgcatcg ccttgctggt
     6241 cgtcaaacct ttgtcgatgc tggttttgat gatgacggca acccaacccg tgatccggca
     6301 acggtcgaga aaaacctccg tctaatgccg atgggcttct ggaaaggttc gggcttatcg
     6361 attgtgttag atatgatcgc caccttgctc tctaacggtg aatccactgc ggcagtcacc
     6421 gaagataaag acgatgaata ttgcgtgtcg caagtttata tcgctattga agtggatcgc
     6481 ttaattgacg gcaaaaccaa agacgaaaaa ctcaaccgta ttatggaata tgtgaaaacc
     6541 gcagaacgtg ccgaccctga tgtggcagta cgtttaccgg gccacgagtt cacccaaatt
     6601 ctagccgata acaaagccaa cggcattccg gtggatgaca ccgtttgggc gaaattacag
     6661 gcgttgtaat tgcaaattga ccggtagggt gggcgtaagc ccacgcatta gacacaatca
     6721 taagatgacg tgggcttacg cccaccctac aagcggtcat ttttccgcag aattttacaa
     6781 aacggaggta tgaatgtttt ttggtcatat ttcacaagtt aaagcgaatc gatacccgcc
     6841 ggcgatccaa attgcgttga actatctgaa aaataccgat tttgatgcga tggaagcagg
     6901 ggtttacgaa ctcaaaggca gacaaattta tgtgcaggtg ttggatttga acaccaaatc
     6961 gaaacacgaa tttcagccgg aagtgcatcg caattacctc gatgtgcagt atctacaccg
     7021 aggcaaagag ataatggctg cggcggtgga taccggcacc aatccgattg cgatggaata
     7081 caaccctgag cgggatattc aatattatca atccgttgcc aacgaaaatg aatttcgctg
     7141 cgttgaaggc aatttttgac ggcacggaaa ccattcgcaa agtggtggta aaaattgcga
     7201 tgagcgaaat tgaggagcaa cgatgaaagc cttagctcaa ttagtcggaa aactgttaga
     7261 aatcttggtg gtggtgattt tatccgcaat gtcgattttg gttttcgtca atgtggtact
     7321 acgttacggt tttaacagca gcattagcgt gaccgaagag gtgtctcgct atatgtttgt
     7381 ttggttggcg tttttagggg cggtgttggc atttagcgaa aatcaacacg ttaaagtcac
     7441 aatgctgacc gataaattat cgccaacggc tcgtaatatc ttaagcgtag tcacagattt
     7501 agcgatgttg ttctgttgct acttaattgt ggacggtagc tggattcaat ttaacctcaa
     7561 cctgaataac tttgccccga tttcaggctt accgcaaggc atcactttcc ttgccagcac
     7621 agtggcaggg gtattaatcg gtttattaat tattgcccgc attgtggcaa cggttggcgt
     7681 gattgcaaaa ggagaaaaat agatgactgt ggtaattttt ctttccgtct tgcttggctc
     7741 gattttattg ggcattccgg tagctttcgc cctgttggtc tgcggtgtgg cgttaatgtt
     7801 gcatttagat ctgttcgatg cccaaatttt ggctcaacaa attgtgagcg gtgcagacag
     7861 tttctcgcta atggcaattc cgttcttcat tcttgccggt gaaattatga acgagggcgg
     7921 tctctccaaa cggattatcg acctgccgat gaaattagtc ggtcataaac ggggcggttt
     7981 aggttttgta gcaattttag cggcgatgat tatggcaagc ctttccggtt cggcggtggc
     8041 ggataccgca gcggtagtcg caatgctact gccgatgatg aaaaccaccg gttatccgat
     8101 tgaccgctct gccggtttaa tcggtacggc agggattatc gccccaatca ttccgccaag
     8161 cattccgttt atcgtatttg gtgtggctag tggcgtgtcc attaccaaac tgttcttagc
     8221 cggtattttc ccgggcatta tgatggggat ctgcttggct gccctttggt ggtggcaggc
     8281 aaaacgtttg gatttaatga ccttctccaa agcgaccaaa gaagaacttt gcatttcatt
     8341 taaaaacagt atttgggcgt tattgttgcc tgtcattatt atcggtggtt tccgctcggg
     8401 aatgttcacc ccaaccgaag cgggtgcggt cgcaactttc tatgccttga ttgtttcact
     8461 gtttgtttac cgtgaaatga agttcaaaga tttatacaag gtagtgttgg cggcagcgaa
     8521 aaccacggca gtagtgatgt tcttagtggc agcggcaaat gtgaccggct ggctgattac
     8581 cgtagcggaa ttaccgatga tgctcaccga gctgttagag ccgttaattg aaagcccgac
     8641 cacactctta ttggtgatta tgttagcggt gtttattatc ggaatggtga tggacttaac
     8701 cccaaccgtg ctgattttaa cgccggtatt aatgccgttg gtggaagagg caggcattga
     8761 cccggtttac ttcggtgtgc tgtttattct taacacctcc atcggcttga ttacaccacc
     8821 ggtcggcaac gtgctaaacg tgattaccgg cgtgtcgaaa ctgccgttcg accaagcggc
     8881 taagggcgta atgccttacc tcgtaatgat gatttgttta ctactgttgt tcgtgttctt
     8941 cccgtcactg gtgttagtgc cgttaagctg gatgcagtaa tggtttgaac cgaaacaagc
     9001 ggtcgaattg acgcaaaaat ttgcaaattt ttttggcaaa acagaccgct tgcaactcaa
     9061 tttttaatca caggagaacc ctatgaaatt atttaattta aaaaccttat ttgccttagt
     9121 ggcaggcgtt gcggtaatga gcggctctgc aatggcagaa acctcactgc gttttggtta
     9181 tgaagcccca cgttccgata cccaacacat cgccgccaaa aaattcgatg aattattggc
     9241 agcaaaaacc aaaggtgaaa ttaaattaaa actgtttccg gacagcacct taggtaatgc
     9301 tcaaacgatg atcagcggcg tgcgtggcgg tactatcgac attgaaatgt ccggctcgcc
     9361 aaactttacc ggcttagagc caaaactaaa tgtgattgat attccgttta ttttcaaaga
     9421 tcgtgaacac gtttacaaag tattagacgg cgaagttggt caaggcttat taaaagattt
     9481 agaagcccaa ggcttaaaag gcttagcctt ctgggacgtt ggcttccgtg ctttctccaa
     9541 ctcaaaacac cctgtgacca agccggaaga catcaaaggc ttaaaagtcc gcaccaacca
     9601 aaacccgatg tacattcaag ccttcacctt actaggcggc aacccggtgc caatgccact
     9661 ttctgagctt tacaccgcac tcgaaacccg tgccgttgat gcccaagaac acccaatcgg
     9721 cattttctgg tcggcaaaac tgtttgaagt acaaaaacat ttaagtttaa ccaaccacgg
     9781 ctacaccccg ttaatcgtgg tgatgaacaa agcgaagttt gacggcttag ctcctgaatt
     9841 acaaaccgca ttagttgaag ccgcaaaaga agccggtcaa ttccaacgtg atctcaacgt
     9901 gaaaaacgaa aaagagatca tcgaaaaatt acgcaaacaa ggcatcgaag tgatcgaaca
     9961 agtggataac gccccgttca aagcagcgat tgaagcggaa gtccgcaaag ctttcgtgga
    10021 aaaacacggc gatgaattat tgaaaaaagt ggatgcgtta gcacagtaat tgactttatt
    10081 ttagtctaaa gctccctccg tttgggggga gttgttgtat agactctact ataggagaga
    10141 ctatgaaact gtttaattta aaaactttag ccgctttcgt tgccggtttt gcactgtttt
    10201 caaccgcaca agcagaaacc tcattccgct ttgcgtatga agctcctcgt tctgatactc
    10261 aacatattgc agcgaaaaaa tttaatgatt tgctgcaaga aaaatcccaa aaagggctga
    10321 aattaagcct cttccctgat agcacgctcg gcaacgcaca aacggcgatt agcggtgtgc
    10381 gtggcggtac tattgatatt gcaatgtcca gctcctctaa ctttaccggg ttagaaccaa
    10441 aactgaatgt gattgatatt ccgtttattt tcaaagacag agaccacgcc tataaagcct
    10501 tagatggaga gattggtcaa ggtttattaa cctcattaga ggctcacggt ttgaaagggt
    10561 tggcgttttg ggaagttggt ttccgagcgt tttccaactc caagcacccg atcaccaaac
    10621 cggaggatat taaaggctta aaaatccgta ctaaccaaaa cccgatgtat attcaagcct
    10681 tctctatttt aggtgcaaat ccggtgccaa tgccgctttc caagctttac actgcactgg
    10741 aaaccaaagc ggttgatgcc caagaacacc caatcggcat tttctggtcg gcaaaactct
    10801 atgaagtaca aaaatatttc agctttacta accacggtta caccccgtta attgtggcga
    10861 ttaacaaagc gaaatttgat gcactgccag ccgagcaaca aaccgcatta gttgaagcgg
    10921 caaaagaagc cggaaaatac caacgccaac ttaacctaga aaatgagcag aaaattatcg
    10981 actcgctcaa aaaagcaggt attgaatttg tggataactt agataccaca ccgttcaaag
    11041 atgccgtatc ggctgaaacc cgcaaggcat ttatcgagaa aaacggtgat ggcttagtta
    11101 aagccattga tgcattggcg aagtaaaaat agagctacaa agtgctcggt taaactaacc
    11161 tcacacgaat cgtgtgaggt acaagcggtc aaaatccgca aaatttttac acatctttcc
    11221 tcaaaggagg aacaaatggc acagcccatt ttaagtatgc agcacatcat caaacgcttt
    11281 ggtagccata cggcggtgaa tgatgtcagc cttgatatcc actcaggcga gatcgttgcc
    11341 ttactcggtg aaaacggtgc aggtaaatcg accctaatca aaatccttgc cggtatttat
    11401 gaccgtgacg agggtgatat tcttttccat aaccaaaaaa tccaatctgc ccacgctatt
    11461 gagaaaggca acaaaaagcc catcgctttt atccaccaag atttaggcct aatagaatgg
    11521 atgacgattg ccgaaaatat ggcatttgta atggggttcc ctcgcaaatt tggcttgatt
    11581 gactgggcga aagtgcgaga gcagtcgcaa aaagcccttg attttgtagg cattaaactc
    11641 tctgccgaca ctcgagtgtt tgatttaagc cgtaccgaaa aagccttact cgccattgcc
    11701 cgtgcgattg ccgtcaatgc agaaatcttg gttttagacg aacctactgc ttccctacct
    11761 gcctctgatg tagagcatct tttcactgtg ttaaaccgct tacgttccca aggtgtggga
    11821 atgatttatg tgacccaccg tttagatgaa gtgatcgcca tttccgaccg cattttggtg
    11881 atgcgggacg gtttcccggt tgcagaaggg caaaccaagc tctatgacgt caaaggcttg
    11941 gtcaaagcga ttgtaggcga agagagccgt ggcagacagc gggtggattt accaaccgat
    12001 actcctgaaa ttttaagcct gcaaaatgtc gtggttggcg acaccggccc ggtgaatttc
    12061 cgtctgcaca aaggtgagat gattgccctt gccggcttgc gtggagcagg gcaggaagaa
    12121 atcggccgct tattatttgg ggagcgaacc ttagacaaag gcgaaattca gttagacaag
    12181 cggtcatatt ctgctaaaga tccgcaagat gcgatagcca aaggtgtggc attggttgcg
    12241 ggagaccgca cccgtgaaag cgtgtttatg tcaatgacta ccagtgagaa cctgtttatc
    12301 aacccggtac taagcggtca ttcaccatta aaacgctact cccgccgtga agagtggggt
    12361 gagagctggt acaaattcca actattcgat attcgtccga aaaatttgtt tattgatgcc
    12421 agtgcgttat ccggtggtaa tcagcagaaa atcgtgttgg cacgttggat gcacctcaat
    12481 acgcctgttc tgattttaga agacccgact gccggcgtgg atgtaggagc aagggcagag
    12541 atttacgact tgctcaacaa agcccttgca gaaggggtcg caattattgt gatttccacc
    12601 gactttgaag agatcgctca tttgtgtaac cgagcattag tcttcaaccg aggggaaatt
    12661 gccggtgaac tactgaacga agaggtgact ttcgccaatt tgctggcgtt ggcatcggat
    12721 agtcagtcga aaaaacaata acttactctc gcccgcttgc gggagagaga cagctaaaaa
    12781 tagcgtcagg ctatttttag cagagagagg gtaaacaagc ggtcattttt cttaaaaaat
    12841 attgcgaacc ctctccctcc gaaagcctaa cggctttctc ctccctctcc cgcaagcggg
    12901 cgaggggaaa atgcagaatt ttaacggagt aatttatggc tcaaacaaac atcaaatcaa
    12961 ccgcactgga acaaccggta tctatcgccc gtgacggttt tatggcatgg ttttcacaaa
    13021 tgtccactcg ttatggctta ctgtggttat gtgtgttatt ggtgattatt ttctcactta
    13081 ccaccgaatc tttcgcctca atgctgacat taaatgcgat tttagaaagt aaatcgaaaa
    13141 ttgccctact tgctttggca gccacaacta caatgattgt cggcaaaatc gacctgaacg
    13201 tgggtttcgg tattgtgttg tggcacattc ttgtgattac tctgcaagtc caatacggct
    13261 tctcgtggta tatggcgatc ttaatcgtgt tagtgattgc cgctctttac ggcttgctga
    13321 atgggatttt agttgctctt gctgatatcg atagctttgt ggcaacactt ggctcaggca
    13381 cagtgcttta tgccgtagca ctctggcact cgggcggtcg ccaaattgtc ggggatttac
    13441 ccgatgaatt tatcgcactc aacagcacag aaattttcgg tatcccgatt tctgctttct
    13501 atgtgctggc agtggctatc gtaatgtggt tggtgacaga acataccccg accggtcgtt
    13561 gtatgtatgc ggttggtggc aacccaacgg cagctcgcct aaatggtatc aatattaaaa
    13621 aatacaccat tgtgccgttt attgtctcta gtgtaatcac tgctttcaca ggcgtattga
    13681 tctctgctca acaaggcgtt ggtcaggcaa gtgtcggtat ggactactta ctgcccgcat
    13741 tggttggggc attcttaggg agtaccacta ttcgcccagg gcgtattaac gtatggggaa
    13801 cagtggtggg gattgccatt cttgccatcg gtatttcagg tattcaacaa ttcggtggag
    13861 cgttctgggt tgagccactc tttaacggtg caacactgtt actttccatc actattgcag
    13921 gctatgccca acgcaaacgc ttgttaaatc aaaaagctgt acagaaaaaa tcgaccaact
    13981 aagaggattt gattatgaaa aaagcatttc gtacaacctt aactgcaatc gcaaccttaa
    14041 ctgctattgc tttcggaaat aatgcgtttg ccaatgacga cccgttcgta caagaagcaa
    14101 aacagcttgt cgcagcagct acggctaagc aagaaaaatg ggacggaccg acaaccggcc
    14161 ctcaattaca aaaagagaaa actgtgattt ttattgcctc tgatatgaaa aacggtggtg
    14221 tacttggtgt gattgacgga atgaaagaag ctgttggcgt aacgggctgg aagttagatg
    14281 tattagacgg tgcaggtacg gtaaacaacc aactcgccgc acttaaccaa gcgattgccc
    14341 gcaaaccgga tgcgattgtg attggtggct ggaacccgaa tgtggcgaaa atcccactac
    14401 aaaaagcgac taaaaacggc attaaacttg cagcttggca cgcaacaccg gagccgggtg
    14461 cgattgataa atacggcatt ttctacaacg tgacctctga ctcagacgaa attgcacgct
    14521 tatcggcaat gcttgcggtg gcagaatcta acggtaaggc aaaagcgatt attttaaccg
    14581 actcgctata tgaaattgcg ttacgcaaag cgaacgtcat gaaagaagtt atcgaaaaat
    14641 gtaaagagtg taaggtgtta gagtttatcg acacgccatt ggcggatacc tcaagccgta
    14701 tgcctaacct cactttcagc ttactgcaaa aatatggcga cgatttagag tatgcgttgg
    14761 caattaacga tctctacttt gactttatgg ctccgtcttt acgcaccgct ggtaaagata
    14821 aaccgtttag catttccgca ggtgatggct cagtaacggc ttatcaacgt attcgcaatg
    14881 gtgataaaca gtttgcaacc gtccctgagc cacttaactt acacggctgg cagttagtcg
    14941 atgagctaaa ccgtgctttc gctaacgaaa aaccgtctgg ttatatcaca ccggctcacc
    15001 tagtgactaa agaaaatgtg gcgtttgacg gtggtgaaaa caacctgtat gccccacaaa
    15061 acggttacaa aggcgcttac aaagcgattt ggggcgtgaa gtaatgacgt aggggcaaat
    15121 aaatatttgc ctcgaacaag cggttgtttt ttgcaaagat tttgcgaaat ttaaccgctt
    15181 gtcataaaaa atagagaggg taatacaaat gagcaataaa tttatcccca aaatctccaa
    15241 ccctcgtttt aatgagctgg ttgggaatac gtttgaactt gaagagcttt ttgataaggc
    15301 aatctgggca gaagggccgg cgtggagcaa gccacaacaa gccctctatt ttagtgatgt
    15361 aaaaggttgc acaatgtacc gctggacaga gcaagatggt acacaggttt tccgccagcc
    15421 gtcttatttt tctaacggca atgcgtttga tgcaaacgac aacttgatta cctgtgaaca
    15481 cggcaatcga ggtatcagtt taaccacgcc aagcggtgaa tatcgttttt tggtcggtca
    15541 attagacgga aaacgactga actcacccaa tgatgtggtg gtaaaatcag acggcatcat
    15601 ttggttcact gatccacctt acggtatttt gtcggataac gaaggcaaac agtcgccaag
    15661 cgaaattatc ggttgttata tttactgcta tgatccgaaa accgacaagc tgaatattgc
    15721 aactttcaac acgatgcgac caaacggctt ggccttctcg tcagacgaaa aacaactctt
    15781 tgtggcagat atgtcgagcg tggaatttga cgaagatggc ttacaccact tagtcgtatt
    15841 tgatgtggac ggtaataaac taaaaaatcg ccgagatgtg gcggaaatta gtcccggcat
    15901 tccggacggc ttccgaatta aacaaaacgg cgtaattttc tgctcttgtg aagagggaat
    15961 tattgctctt ttacctgacg gcacggagct gggacgattt gtgctgggta agctaacctc
    16021 aaattgtagc tttggcgatg atgaacaaac actgtttatt acttgttcga atagcgttta
    16081 tcgtttaaca attaaatagc agaatgcatt aagtgcgtct gttgtagcat tacaagcggt
    16141 ttctttttca aaatttttta caaacaaata atggataaca aaatgaacta cacactcggc
    16201 attgattgcg gtgggacttt tatcaaagcc gctctttttg atacacaagg taatattcaa
    16261 gcccttcatc gtgaaaacgt ttcggtaatc agtgaacagg caggttatgc agagcgtgat
    16321 atgtcacaac tctgggctat ttgtgcggaa gtagtgcgtt caaccattga aaaaagtggg
    16381 gtaaacccag cggatattaa agcagtaggg atttccgctc aaggcaaagg ggcgttttta
    16441 ctggataagc agaatcgacc gttggggcgt gcgattttat cttccgacca acgttccctt
    16501 gagattgtta aacaatggca ggctgaaggc attccgcaac aactttaccc gattacccgc
    16561 caaactcttt ggacaggaca ccctgtgtcg attttgaagt gggtgcagca aaatgaaccg
    16621 gagcgttatg cacaaatcgg ggcggtgttg atgtcgcacg actatttgcg tttttgctta
    16681 accggtgagt tgcattgcga agagaccaac atttccgaaa gcaatcttta caatatggaa
    16741 aaaggcgaat acgaccaaca gttagccgat ttgttgggaa tgccggatgt gttggagaaa
    16801 ttaccaccag tgattgaacc gaataaaatt tcgggatatg tgactgaaaa tgccgccaaa
    16861 ttaaccggtt tagcggtggg tacgccgata gtcggtggct tgtttgatgt ggtttctacc
    16921 gcacgttgtg ccaatttaga tgacgaaacc aaactgaatg cagtgctggg aacgtggtcg
    16981 gtggtgagcg gcattaccga tcatattgat gcaagccaat cattaccttt tgtttatggg
    17041 cgttatgccg aggcagggaa atttatcgtc cacgaagcaa gcccgacttc tgccggtaat
    17101 ttagagtggt ttgtgaatca gtggaaactc gattatgtga aaatcaacca agctgttgcc
    17161 caattaccgc cggcggcaag ctcggtgctg tttgtgccgt ttctgtatgg ctcaaatgca
    17221 ggcttaggaa tgcaagccgg tttctatggt atgcaagccc accataccca agcccatctc
    17281 ttgcaggcaa tttacgaagg agtgttgttt agcttgatga gccatttaaa ccgtatgttt
    17341 atccgctttc caaaggctga cgtgctgcga gttaccggcg gaccggtgaa atctaaagtt
    17401 tggatgcaaa tgttggccga tttaaccgga atgcggcttg aaataccaca aatggaagaa
    17461 accggctgct tgggtgcggc attaatggca atgcaagggg ttgggctgga tataagccaa
    17521 gttcaagccc taaataatga aatgcaggtg tttgagccaa atccggaaaa ttatgcggct
    17581 tatcagacga aatatcagcg ttaccaaaaa ttaactgaag cattaaatac aatgatttaa
    17641 cctgaattta tg
//
LOCUS       DANLRW010000048        17081 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.048, whole genome shotgun sequence.
ACCESSION   DANLRW010000048 DANLRW010000000
VERSION     DANLRW010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17081
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.048"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(89..1222)
                     /locus_tag="PXA71_001343"
     CDS             complement(89..1222)
                     /locus_tag="PXA71_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine biosynthesis PLP-dependent protein"
                     /protein_id="HDL5105454.1"
                     /translation="MTKFNNIETTLVQIGNRTDPRTGAVAMPIILSTAYGRDGLGEST
                     GWDYTRTKNPTRAVLEQGIADLEGGDAGFAMASGMAAIQLVMSLFKAPDEWIISSDVY
                     GGSYRLFDFSHKNHGTLKPVYVNTADLAAIEAAITPNTKAIFVETPSNPLMEECDVAA
                     IAKIAKKHNLMLIVDNTFLTPALFRPIEHGADIVIHSATKYLSGHNDVLAGLIVAKDS
                     DATKVNGQNLTERLFYFQNCAGAVLSPFDSYLAVRGMKTLALRMERHQSNATELAKFL
                     AEQPEIDSVLYSGKSGMLSFRLQKEEWVAKFLKAIKLITFAESLGGAESFITYPATQT
                     HMDIPEAERITRGITNNLLRFSVGLEHVEDIKADLLQAFKQLK"
     gene            complement(1239..2051)
                     /gene="dapB"
                     /locus_tag="PXA71_001344"
     CDS             complement(1239..2051)
                     /gene="dapB"
                     /locus_tag="PXA71_001344"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDL5105455.1"
                     /translation="MTLKIGIVGAGGRMGRQLIQAVHNAQGVELGSAFERKGSSLVGS
                     DAGEVAGVGTLGVVISDDVAQNVAGFDLLIDFTRPEGTLEHLDICVAHHKQMVIGTTG
                     FDDAGKAAIKAASEKIGIVFASNYSVGVNLVFKLLEKAAKVMGDYCDIEVIEAHHRHK
                     VDAPSGTALSMGEHIAKTLGRDLKTHGVFERNGITGERKRDEIGFATIRAGDVVGEHS
                     VWFADEGERVEIAHKASSRMTFANGAVRAAKWLNGKQNGLFDMTDVLDLNNL"
     gene            complement(2102..2479)
                     /locus_tag="PXA71_001345"
     CDS             complement(2102..2479)
                     /locus_tag="PXA71_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105456.1"
                     /translation="MGIKVLFGTKISAELQYLPEKDLVKILQFKQHVEIYGLENLAGR
                     NKSSDDVPTNDPYWAEKVAKAQKYSLWHYHIGIPEYDTSQGFGNYTSEYILHYVKGEN
                     FIQIVDFTSHPPFKLPSESYLQN"
     gene            complement(2469..2942)
                     /locus_tag="PXA71_001346"
     CDS             complement(2469..2942)
                     /locus_tag="PXA71_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105457.1"
                     /translation="MMKNLPLSMADTLAVIYPAFDFAADDKPATEQQISLLNFRITMA
                     NQLLIACIETIEKNPNFWAEIDLNDFKKYLNQNKVVIFDTQQYFTDGSRTMAILDNMK
                     SNIRKIEQQLSQATAFNFDLERMKERLNDTFHEVPKDITNVNEFRNWLKGVANGH"
     gene            complement(3010..4098)
                     /gene="rlmM"
                     /locus_tag="PXA71_001347"
     CDS             complement(3010..4098)
                     /gene="rlmM"
                     /locus_tag="PXA71_001347"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HDL5105458.1"
                     /translation="MFNKLALYCRAGFEKEVAGEITDKAAQQGIFGFANLKENSGYVI
                     FECYQAGEADRLAQALKFEQLIFVRQMLVVGDLLQNLSENDRISPILAQYAELNPRQS
                     SDVFVETPDTNEAKELLTFCRKFTVPLRSALKKQGWLGKSENMQGSVSLHILFTRPGA
                     CYVGYAYNHNKSPFFMGIPRLKFPAEAPSRSTLKLEEAILTFIPQAEEKKRFNDTMVG
                     VDLGACPGGWTYQLVKRGVFVYAVDHGKMAASLHETGRIEHCPEDGFKFQPPKRKQID
                     WLVCDMVEQPIRISKLIAKWLTNGWCRETIFNLKLPMKKRYQEVQLCLNFLEEELTKH
                     GFWFKMQAKHLYHDREEITVHIAVMGQK"
     gene            complement(4098..4487)
                     /locus_tag="PXA71_001348"
     CDS             complement(4098..4487)
                     /locus_tag="PXA71_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HDL5105459.1"
                     /translation="MKNKFVAIAAFSGLFTVAFGAIASHALSAQLSPKALGWIETGIK
                     YQMFHTLAILALGLFQIANFGQNPPVCRAKAFNIIGSNWALGILLFSGNLYLLALMPT
                     IHWLTPIGGLCFMLGWIALIYISVRKA"
     gene            complement(4594..5995)
                     /locus_tag="PXA71_001349"
                     /pseudo
     CDS             complement(4594..5995)
                     /locus_tag="PXA71_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252330.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
     gene            complement(6150..8507)
                     /locus_tag="PXA71_001350"
     CDS             complement(6150..8507)
                     /locus_tag="PXA71_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HDL5105460.1"
                     /translation="MNTALEKGKFVFLDKPKNTITTAAHWGALNVTVENGKVVKSEGS
                     LAKNHQNELQDVVADQLYSPVRVKYPMVRKGYLEGNKDTTLRGRDKWVRISWDKAFEL
                     VSGEIQRVREQYGSESIFGGSYGWYSSGSLHASRTLLQRYLNVTGGFTNTKGDYSTGA
                     VQVIMPYVLGNIEVYAQQTSWHTIVESTELLVIWSSNPLNTLRIAWTSAEPEGIDYLA
                     KLKASGKRIICIDPVKSETCQFLEAEWLPINTGTDVALILGIAHTLITENKHDHDFLT
                     KYTVGFEQFADYVLGKADNLPKTAEWASQICDIPEEVIKTLANDFVTHRTMLMSGWGL
                     QRLQHGEQSHWALVTLAAMLGQIGLPGGGFGLNYRYSTNGLNVNSGVRLGAINAGKPN
                     PDMPFFPVSRIADALLKPNQPYDYNGQTLHYPNIKLVYWAGGNPFAHHPDTNYLVKAW
                     QQPETMIVNECYWTPTARMADIVLPATTSYERNDLTVAGDYVAKHIIPMKQVVEPQFE
                     AKNDYDIFAELAKRAGKEQAFTEGKSEMEWLKEFYQVAFEAGEKANTPLLDFEAFWAE
                     NKVLSFEAEHQNNTFVRYQDYRTDPIKHKLATPSGKIEIFSETIAKMNYEDCKGHPTW
                     FEHHEYSGKTNEAEPLALVTPHIKYRLHSQLAYSSLRQYYEVNGREPMLIHTKDAADR
                     GITSGDIVRIFNKRGQVLAGAVVTDGIIQGTVALYEGGWYDPQDLGKTDTPLCKNGNP
                     NVLTRNEGSSKLGQGNAPNTTTVQVEKYVGDAPEVTVFKAPFFSE"
     gene            complement(8643..11249)
                     /gene="acnB"
                     /locus_tag="PXA71_001351"
     CDS             complement(8643..11249)
                     /gene="acnB"
                     /locus_tag="PXA71_001351"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014391308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HDL5105461.1"
                     /translation="MENFIENYQQQVDERAALGVVPQPLSAEQTAQLVELLKNPPAEQ
                     AVFLLDLFTNRIPAGVDEAAYVKAAFLADITKGVATSPLISPAHAVKLLGTMQGGYNI
                     ETLLSALDNPELAPIAVEALSKTLLMFDNFHDVKERADQGNPFAQQVLESWANADWFT
                     SRPKLAEKLTVTVFKVTGETNTDDLSPAQDAWSRPDIPLHALAMLKNERDGIFPDENG
                     HTGPIKQLEALKEKGFPLAYVGDVVGTGSSRKSATNSVLWFMGEDIPYIPNKRAGGVV
                     LGGKIAPIFFNTLEDAGSLPIEVDVTNLNMGDVIDIYPYAGKICKHNSDEVLAEFELK
                     TEVLLDEVRAGGRIPLIIGRGLTHKARVALGLPESDVFIKPQSVSESNKGYTLAQKMV
                     GRACGVEGVRPGQYCEPRMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAA
                     YPKPVDVITHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIG
                     ISFPAGSGLVAFAAATGVMPLDMPESVLVRFSGTMQPGITLRDLVHAIPYYAIQQGLL
                     TVEKKGKKNIFSGRILEIEGLEDLKIEQAFELSDASAERSAAACTIKLNKEPIIEYLN
                     SNITLLKWMIAEGYDDKRTLERRIANMQAWLDNPELLEADENAEYAAVIEINLDEIKE
                     PIVCVPNDPDDARLLSQVQGDKIDEVFIGSCMTNIGHFRAAGKLLSQAQGELPTKLWI
                     APPTKMDAGLLTEEGYYSIYGKSGARVEMPGCSLCMGNQARVANNANVVSTSTRNFPN
                     RLGQGANVYLASAELAAVSALLGKLPTPQEYLDYMNNLQKDKDDIYRYMNFDQINSYV
                     KKADNVIVQVAV"
     gene            complement(11269..12516)
                     /gene="icd"
                     /locus_tag="PXA71_001352"
     CDS             complement(11269..12516)
                     /gene="icd"
                     /locus_tag="PXA71_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDL5105462.1"
                     /translation="MQTQVQIPQGETIQLNQDGSLQVPDNPIIPFIEGDGIGVDVTPA
                     MKAVLDAAVEKAYQGKRKIAWMEIYAGEKANKLYGENTWLPDETLELIRQYHVAIKGP
                     LMTPVGGGIRSLNVAMRQGLDLYNCLRPIRYYDGTPSPVKHPELVDMVIFRENSEDIY
                     AGVEWVAGSPEANKVIEFLQQEMGVKKIRFTEDCGIGIKPVSKQGTQRLVRAALQYVI
                     DNNRKSLTLVHKGNIMKFTEGAFKEWGYQVAEEFGAKLIDKGPWMSLTNPKTGEEIII
                     KDSIADAFLQEILLHPTEYDVIATLNLNGDYISDALAAQVGGIGISPGANIGFEAAIF
                     EATHGTAPKIAGQNKGNPGSLILSGEMMLRHLGWVEAADLVVKAVSKTIANKTVTFDF
                     AEMLEGVTLRSTSEFAQDIIANM"
     gene            12750..14030
                     /locus_tag="PXA71_001353"
     CDS             12750..14030
                     /locus_tag="PXA71_001353"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005762304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDL5105463.1"
                     /translation="MSKATLTLETGEKLELNMQKGTLGYQTIDIQPFLKHKLFAYDPG
                     LVSTAVCRSNITYVDGDEGVLLYRGYPIDQLAKHSDYLEVGYMLLFGERPTKEEYKDF
                     VQLIKKHTLVHEQLTKFFSGFRRDSHPMAVMCGVSGALAAFYHDAIDVNNQAHRELTA
                     IRLLAKIPTLAAMCYKYSIGQPFMFPQNHLSYAGNFLYMMFATPCEPYEVNPVLERAL
                     DRIFILHADHEQNASTSTVRTAASSGANPFACIAAGIASLWGPAHGGANEACINMLKE
                     IGTVDRIPEFIARAKDKNDPFRLMGFGHRVYKNYDPRAKVMRETCHEVLKELNIDNPL
                     FEVALELERIALSDPYFIEHKLYPNVDFYSGIVLKAIGIPTSMFTVMFALARTVGWIA
                     HWKEMYLQGNIKIVRPRQIYTGHTKRDFEPMDKS"
     gene            complement(14103..15332)
                     /locus_tag="PXA71_001354"
     CDS             complement(14103..15332)
                     /locus_tag="PXA71_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105464.1"
                     /translation="MFQAEPKNGKVTVEVLKQYLIDELKIDEEEIAIVIGNQHELDNI
                     DLFNPQCKINYIITVEALKEGWDCPFAYIFCSVQNVSSSKEAEQLLGRVLRMPYAKHR
                     QIEDLNRAYAPLSSKSFGETARNLQDKLIGMGFEALEVAEMLRIPQQENWIGNEGDLF
                     YTPTTVLALTQLPEMSDLSEAKRSQLKITEQEGHILVQVKGNLSEKLEKALIRTATGK
                     KKEQIEQQLQIHQNRVEILSSPAEKGEIFKVIPQLCMNIQGEFDLADSQVLLDYQSWN
                     LLDYPAKLDGFRLQENSQSFEIDVEDKRVSYHFNQQQLSFSDDWLRNPVKRGFSLPLA
                     HQNFYPDFIVELIDGRILIVEYKGEQLKSNEDSKEKALIGNLWEKLSQGKGLFIMAVK
                     SDENGQDVRTQLLNKLA"
     gene            complement(15299..16288)
                     /locus_tag="PXA71_001355"
     CDS             complement(15299..16288)
                     /locus_tag="PXA71_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5105465.1"
                     /translation="MKLKNYQNEALNRVSHYFSACLQSDAKTAFSQIQPEYSYKIPSE
                     HSNLRDVPYVCVRIPTGGGKTLLASHSIARIAKQYLDCDFPVTLWPVPSRTIKTQTTE
                     ALKNPQHPYRAVLDKTFNREVMVIESEDFDLLRPQDFGNKAIVIVSTIQNFRVENQDG
                     RKIYAFNEKLTAHFERLLPHIQANLEKISTTDLQENGLTSKQTGKIKCSFANLLRAYQ
                     PLVIVDEAHNARTSLSFDVLSQLSPSAILEFTATPNTDRKAGSNVLYHVSASHLKAEE
                     MIKLPIVLTEHHNWQQAIDGAVINRGALAQKAQYESEYVRPIYCFKLSRKTAK"
     gene            complement(16304..16822)
                     /locus_tag="PXA71_001356"
     CDS             complement(16304..16822)
                     /locus_tag="PXA71_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5105466.1"
                     /translation="MNRRYIGIEIGEHAKTHVVPRLKKVIEGEQGGISKAVNWQGGGS
                     FRFCELGEEVFDAFGSLNPNIRFDDLAAHIWYLENHFPLQKNSEKSPLVGTFNGKAYY
                     LLYNGILGDKRPQSGNVLTRKLMAELPYFAEFIQQGMDIVVYGEACRLGEVQLAEKKI
                     TFKQIPYDVMSR"
     gene            complement(16832..16903)
                     /locus_tag="PXA71_001357"
                     /pseudo
     CDS             complement(16832..16903)
                     /locus_tag="PXA71_001357"
                     /inference="COORDINATES: protein motif:HMM:NF013704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(16910..>17081)
                     /locus_tag="PXA71_001358"
     CDS             complement(16910..>17081)
                     /locus_tag="PXA71_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5105467.1"
                     /translation="RRVFERSAEKKKIHNLISRAHYDMATNEDSASEHLELFGEDIAE
                     DSFDYPKPEKLI"
BASE COUNT         4901 a         3881 c         3207 g         5092 t
ORIGIN      
        1 tctcctcctt tattaaaaaa gaaaacggtc agattggtaa aatctatacc taatatgacc
       61 gcttgtgaat acaaaaaaat tacttcaatt acttcaactg tttaaaggct tgcagtaaat
      121 cagctttaat atcttcaacg tgttctaaac caacggaaaa acgcagtaaa ttattcgtaa
      181 tgcctcgtgt aatacgttct gcttccggaa tatccatatg ggtttgtgtt gcaggataag
      241 taataaaact ttctgcaccg cctaaacttt ccgcaaaggt aatcaattta attgccttga
      301 gaaatttcgc tacccactct tctttttgta aacggaaaga taacatacca cttttgcctg
      361 aatataacac gctgtcaatt tcaggttgct ctgctaagaa tttagccagt tcggtggcat
      421 tagactgatg gcgttccatt cgtaatgcca aggttttcat accacgcacg gcaaggtaag
      481 aatcaaatgg cgacagcact gcaccggcac agttttggaa atagaataaa cgctcggtca
      541 aattctgccc gtttactttg gtagcatcag aatctttcgc aacaattaag ccggctaaca
      601 catcattatg ccccgaaaga tacttggtcg cactgtgaat cacaatatca gctccgtgct
      661 caatcggacg gaataacgct ggggttaaga acgtattatc aacgatcaac attaaattgt
      721 gttttttcgc aattttagca atggcagcaa cgtcgcactc ctccatcaat ggatttgacg
      781 gcgtttccac gaaaatcgcc ttagtattcg gtgtaatagc tgcttcaatc gctgctaaat
      841 ccgctgtatt aacataaacc ggctttaatg tgccgtgatt tttgtggcta aaatcaaaca
      901 agcggtaaga accaccataa acatcgctgg aaataatcca ttcatcaggt gctttaaata
      961 atgacattac tagctgaatc gctgccattc cagatgccat cgcaaaaccg gcatcaccgc
     1021 cttctaaatc cgcaatcccc tgctctaata cagctcgagt tgggtttttg gtacgggtgt
     1081 aatcccagcc ggtagattcg cctaagccat cacgcccgta agcagttgat aagataatcg
     1141 gcattgccac cgcccctgta cgaggatcag ttctgttacc gatttgcact aatgtggttt
     1201 caatattatt gaattttgtc attgttatta tccttcaatt acagattatt tagatccaat
     1261 acgtctgtca tatcaaacaa gccattttgt ttgccattta accattttgc agcacgcact
     1321 gcgccattgg caaacgtcat tcgactagag gctttatgtg cgatttcgac acgttcgcct
     1381 tcatcagcga accatacact atgctcccct acaacatcac cggcacgaat agtagcaaag
     1441 ccgatttcat cacgtttgcg ttcgcctgta ataccgttac gttcaaatac gccatgagtt
     1501 ttcaagtcac gcccaagagt tttggcaata tgttctccca ttgataaagc cgtacctgat
     1561 ggtgcatcaa ctttatggcg atggtgtgcc tcaatcactt caatatcaca ataatcgccc
     1621 attacttttg ctgctttttc gagcagttta aacaccagat tcaccccaac gctgtagttt
     1681 gaggcaaaaa cgataccgat tttttcactc gctgctttga ttgcagcttt acctgcatca
     1741 tcaaaaccgg ttgtgccaat caccatttgt ttatgatgag ccacacaaat atccaaatgt
     1801 tctagcgtgc cttcagggcg agtaaaatca attagtaaat caaaacctgc tacattttgg
     1861 gcgacatcat cagaaatcac cacacctaat gtaccaaccc cggctacttc accagcatca
     1921 ctacctacta atgatgaacc tttacgctca aaagcagacc ctaattctac gccttgtgca
     1981 ttatggacgg cttgaattaa ttgacgcccc attcgcccac cggcaccgac gattccaatt
     2041 tttaatgtca tatttgttct tcctttttat atttgttttt tacaagcggt tacattttta
     2101 attaattttg caaatagctt tctgatggca atttaaaagg tgggtgagaa gtaaaatcaa
     2161 caatttgaat aaagttttca cctttcacat aatgtaaaat atactcagaa gtataattac
     2221 caaatccttg actggtatca tattctggaa tgccgatatg ataatgccat aaagaatatt
     2281 tttgtgcttt agccaccttc tctgcccaat aaggatcatt cgttggcaca tcatcagaac
     2341 ttttatttcg accagctaga ttttccaatc cataaatttc aacgtgttgt ttaaactgca
     2401 ggattttgac tagatctttt tcaggcaaat attgcaattc ggctgaaatt tttgtaccaa
     2461 ataaaacttt aatgcccatt tgcaacacct ttcaaccagt ttctaaattc attaacattc
     2521 gttatatctt taggcacttc gtgaaaagta tcatttaacc gctctttcat tcgctctaag
     2581 tcaaaattaa atgcggttgc ttgagagagt tgctgttcaa ttttgcgaat attggacttc
     2641 atattatcca atatagccat tgtccttgag ccatcagtaa aatactgttg ggtatcgaaa
     2701 atcaccacct tattttgatt taggtatttt ttgaaatcgt ttaaatcaat ttcagcccaa
     2761 aagtttggat ttttttcgat agtttcaata caggcaatta ataattgatt tgccattgta
     2821 atacgaaaat ttaacaatga gatttgctgc tctgttgcag gtttatcatc agctgcgaaa
     2881 tcaaatgccg gataaatcac tgcaagcgtg tcagccatag ataagggtaa atttttcatc
     2941 atctctcctt acggaagaag ttgtcattat ctactggatt acttaaaaaa acaacttatt
     3001 cattttatgc tatttttgcc ccatcaccgc aatatgtacc gtaatttcct cacggtcgtg
     3061 gtagaggtgt ttagcttgca ttttgaacca aaacccgtgt ttcgttagct cttcttccaa
     3121 gaaattgagg catagttgca cttcttgata acgttttttc atcggcagtt ttaggttgaa
     3181 aatcgtttct cgacaccaac cgttagtcag ccattttgca atgagtttcg agatacgaat
     3241 cggctgctct accatatcac aaaccagcca atcgatttgt ttacgcttag gcggttggaa
     3301 tttaaaccca tcttcagggc aatgctcaat tcttccggtt tcgtgtaaac ttgctgccat
     3361 tttgccgtga tcgactgcat agacaaaaac accacgtttg actaattgat aagtccaacc
     3421 acccggacaa gccccaagat cgacccctac catcgtatca ttaaagcgtt ttttctcctc
     3481 tgcttgcgga ataaaagtta aaatcgcctc ttctaattta agcgttgagc gactaggtgc
     3541 ctcagccggg aattttaaac ggggaatccc cataaaaaac ggcgatttat tatggttgta
     3601 cgcatagccc acatagcaag ctcccggacg agtaaataaa atatgcaagc tcacactacc
     3661 ctgcatattt tccgatttcc ccaaccaacc ttgttttttc aatgccgacc gtaatggcac
     3721 agtaaattta cgacagaaag ttaataattc tttcgcttcg ttggtatccg gtgtttcgac
     3781 aaatacatca gaactttggc gaggattaag ttcggcatat tgggctaaaa tcggcgaaat
     3841 tcgatcattt tcagacagat tttgcaacaa atccccaaca accaacattt ggcgaacaaa
     3901 aataagctgt tcaaacttta acgcttgggc taatcgatct gcttcccctg cttgatagca
     3961 ctcaaaaatc acatagccac tattttcttt aaggttggca aagccaaaaa tgccctgttg
     4021 tgcagcttta tccgtgattt cgcctgctac ctctttttca aaccctgctc ggcaatataa
     4081 ggctaattta ttgaacatta ggcttttctc acactgatat aaattaacgc aatccaacca
     4141 agcataaagc agagaccacc aataggcgta agccaatgaa tagtcggcat taacgccagt
     4201 aagtacaggt tgccactaaa aagcagaatg cctaacgccc aattgcttcc gatgatgtta
     4261 aaggctttgg ctctacaaac gggtggattt tgcccaaaat ttgcaatttg gaataaacct
     4321 aaagctaaaa tggcaagggt gtgaaacatt tgatatttaa tccccgtctc aatccagcct
     4381 aaggctttag gcgataattg agccgataat gcgtggctgg ctatcgcccc aaatgccaca
     4441 gtaaataagc cgctgaatgc ggcaattgct acaaatttgt ttttcataag ttgaagatag
     4501 gtatgatgtt agatggctta ctatatcata ttatcgaaac caacaagcgg tgaaattttg
     4561 caaaaaaatt acaaaaaatc accgtttgta tgcttaatgg ttcaagataa tatccacatc
     4621 ttccgattta tcgtgaaccc caaatctatc tactaaggtt ttgctggcct catttaatcc
     4681 gataatttct acctcaacat cactttttcg atatttcaac acaactttat ctaacgctga
     4741 aactgccgtt acgtcccaaa agtgagcgtg ggttaaatca atgtggactt ttttcagttc
     4801 tgaacgggta aaatcaaatt gtgcgataaa atcatcagat gaggcaaaaa atacttgccc
     4861 gataacatca taacgcaatt cctctttctc tatagcactt gttttaaccg ccatataacg
     4921 tccaatttta ttcgcaaaga ataatgccga gagcaacacg ccggaaaata caccaagggc
     4981 taagttatgt gtataaacca caattgcaac agtgactaac atcactacat taaagccgat
     5041 tgggtgcgtt tttagctctt ttaaggaatg ccaattaaag gtgccgatag agaccataat
     5101 catcactgca actaatgcag ccatcggaat cactctcaaa atatcgctca aaaagaccac
     5161 aaaaatcagt aataatattg gcaatgccct gccctttaca ttcacggttt ttatcgctgt
     5221 ctgtctctgt catttcatca acaatcgttg ccgtcattaa agattccaat aaccctactg
     5281 cggccaagct gaaagaataa ggcaaaataa tccataaggt gtctaaatta agcggaatat
     5341 cgggtaataa aaacaccggt aaggtatcgg gtaattgccc catatcccca acggtacgaa
     5401 catcaatgcc ttgccataat gtgaaaagtg ttaaagcaat aatggtcact aatggtgagg
     5461 gaatgatttt tccaatcacc ggtacataag gaaaaagata aatgatagca agccctgcta
     5521 ccaccagtgc ataagtatgc caagttgtat tttgtaactc aggtagttgt gccataaaaa
     5581 ttaaaatggc aagtgcatta acaaacccaa tcactacggc tcgtgccaca aaccgcataa
     5641 gcgagccgag ttttaaccaa ccggcaataa tttgcaacac gcctgttaat aaggtggccg
     5701 ctagcatata ttgtaaaccg tgatccctca ctaagcctgc taataccaga gccattgcac
     5761 cggttgctgc agaaatcatc gccggtctgc cgcccacaaa actgataatt actgcaatac
     5821 aaaatgaggc atataaacca atttgtggat caacccctgc aataattgaa aatgctatgg
     5881 cttctggaat taacgccaaa gccaccacta aaccagagag aacatcacct cgtacatttg
     5941 aaaaccattg ttgtttaatt accgtaggcg aaaattgctg aaataaagtt gtcattatta
     6001 cccttaaata aaaagaaaag ccgagcaaag tcggctaaaa atgaggcgag agagtagcaa
     6061 attagtgaaa agtcgtcaaa taaacaagcg gtcttctttc gctctttttt tgcaaaaaat
     6121 agtagaaaaa tgaccgcttg gattaattgc tattcactaa aaaaaggggc tttaaacacc
     6181 gtcacttcag gtgcatctcc cacatatttt tccacttgaa ccgtggtagt gttcggtgca
     6241 ttgccctgcc cgagttttga tgaaccctca ttacgggtta gcacattcgg gttgccgttt
     6301 ttgcatagtg gagtatctgt tttgcctaaa tcttgcgggt cataccaacc accttcgtat
     6361 aacgctactg tgccttgaat gatgccatca gtcaccactg ctcctgccaa cacctgccct
     6421 cgcttgttaa aaattcgcac aatatcaccg cttgtaatgc ctctgtcagc ggcatctttt
     6481 gtgtgaatta gcattggttc tctgccgttt acctcgtaat attgacgtaa tgaggagtaa
     6541 gcaagctggc tgtgtaaacg gtatttaata tgcggtgtaa ctaatgccaa cggctcggct
     6601 tcgttggttt tgcctgaata ttcgtgatgt tcaaaccaag tcgggtgtcc tttacaatct
     6661 tcataattca tcttggcaat ggtttcggag aaaatctcaa ttttgcctga tggcgttgcc
     6721 aatttgtgtt taatcggatc agtacgataa tcttgatagc gaacgaaagt attattttga
     6781 tgttctgcct caaagctcaa cactttattt tccgcccaaa atgcctcgaa atccagcaat
     6841 ggcgtattag ctttttcccc cgcctcaaag gcaacttggt aaaattcctt aagccattcc
     6901 atttcgcttt tgccttcggt aaatgcttgt tctttaccgg ctcgtttcgc taattcggca
     6961 aaaatatcgt aatcattctt cgcctcaaat tgcggttcaa ccacctgttt catcgggata
     7021 atatgttttg ctacataatc accggcaacg gtgagatcgt ttcgctcgta gctggtggtt
     7081 gcgggcaata caatatctgc cattcgagcg gtcggtgtcc agtaacattc attgacgatc
     7141 atcgtttccg gctgttgcca cgctttcact aaatagttgg tatccgggtg gtgagcaaac
     7201 ggattacccc ccgcccaata gactaatttg atgttcgggt aatgtaatgt ttgcccgttg
     7261 taatcataag gctgattcgg tttgagcaac gcatcggcaa ttcgagacac cgggaaaaac
     7321 ggcatatcgg ggttaggttt acctgcattg attgccccta aacgaacacc ggaattaaca
     7381 tttagcccat tggtagaata acgataattt aagccgaaac cgccgcccgg caagccaatt
     7441 tgcccgagca tagcggcaag agtcactaac gcccagtggc tttgctcccc gtgttgcagg
     7501 cgttgcaagc cccagccgga catcaacatt gtgcggtgag taacaaaatc atttgctaag
     7561 gttttaatca cctcctccgg aatgtcacaa atttggctcg cccactctgc tgttttaggt
     7621 aaattatctg cttttcctaa cacataatca gcaaattgct cgaaaccaac agtatattta
     7681 gttaagaagt cgtgatcgtg cttgttttca gtaataaggg tgtgggcgat ccctaaaatc
     7741 agtgcaacat ccgtgccggt attaataggc aaccactctg cctctaaaaa ttgacaggtc
     7801 tcgcttttca ccgggtcgat acaaataatc cgtttaccgc ttgcttttaa tttggcgaga
     7861 taatcaatcc cctccggttc ggcagaggtc cacgcaatgc gaagtgtatt cagtggatta
     7921 gacgaccaaa ttaccaataa ttctgtgctt tctacaattg tgtgccaact ggtttgttga
     7981 gcatacacct caatattgcc taatacataa ggcataatca cttgcaccgc accggtggaa
     8041 taatcgcctt tagtattggt aaagccgcct gtgacgttta aataacgttg caaaagcgtg
     8101 cgagaggcgt gcagtgaacc actgctatac cagccgtaag aaccgccgaa aatggattcg
     8161 ctgccatatt gctctcttac ccgttggatt tcgccggaaa ccagctcaaa ggctttgtcc
     8221 caagagattc tcacccactt atctcgccct cgcaaagtgg tgtctttatt cccttccaag
     8281 tagcctttcc gcaccatcgg atatttcacc cgaaccgggc tatagagctg atccgccacc
     8341 acatcttgca attcgttttg gtgatttttc gctaaactgc cctctgattt caccactttt
     8401 ccgttttcca ccgttacatt taatgcaccc cagtgggcgg cggtggtaat ggtatttttc
     8461 ggtttatcca aaaagacaaa cttccctttt tctaatgctg tgttcattta aattaatgcc
     8521 ttttctgtta caaaattgag aggaatttac tggattaagc caaaagttgc aaccacaagc
     8581 ggttgttttt agccaaaaat ttgcaaaaca aaacccacct aaaaaggtgg gcttcaagga
     8641 agttaaacgg caacttgaac gattacattg tccgcttttt tcacataact attgatttgg
     8701 tcaaagttca tatagcggta aatatcgtcc ttatctttct gcaagttatt catatagtct
     8761 aggtactctt gcggtgtcgg caatttaccc aataacgcag aaactgcggc taattctgct
     8821 gaggctaaat acacatttgc cccttgccct aaacggttcg ggaagtttcg ggtagaggta
     8881 gaaaccacat tagcattatt tgccactcgg gcttggttac ccatacagag agaacagccc
     8941 ggcatctcta cccttgctcc gcttttgccg taaatgctgt aatagccctc ttcggtcagc
     9001 aagcctgcgt ccattttagt cggcggagca atccataatt tagtcggcaa ttcgccctgt
     9061 gcttggctta acagtttacc tgccgcacgg aaatgcccga tattagtcat acaagaacca
     9121 ataaagactt catcaatttt atcgccctgt acttgagaaa gcaggcgagc atcgtcaggg
     9181 tcattcggta cgcacacaat cggctctttg atttcatcta agttgatctc aatcactgcg
     9241 gcatactccg cattttcgtc tgcctctaaa agctccggat tatccaacca cgcttgcata
     9301 ttggcgatac ggcgttctag cgtgcgttta tcgtcatagc cttccgcaat catccatttt
     9361 aaaagcgtaa tattagaatt cagatactcg ataatcggct ctttgttgag cttgatggta
     9421 caggctgcag cagagcgttc agcagaagca tcagaaagct cgaaggcttg ttcgattttc
     9481 agatcttcca acccttcaat ttctaaaatt cgaccggaga aaatattttt cttacctttt
     9541 ttctccaccg tcagcaagcc ttgctgaatg gcataatacg gaatagcgtg aaccagatcc
     9601 cgtaaggtaa tgcccggttg cattgtgccg gaaaaacgca ccaagaccga ttccggcata
     9661 tctaacggca tcacccctgt tgccgcagca aaggcaacta agcccgaacc ggcagggaat
     9721 gaaatcccga ttgggaaacg ggtgtgggaa tcgccgcctg taccgacagt atccggcaat
     9781 aacatacggt ttagccaaga gtgaatcacg ccatcacccg ggcgaagtga cacaccgcca
     9841 cggttcataa taaaatcagg caaagtgtgg tgggtaatta cgtccaccgg tttcgggtaa
     9901 gcggcagtat ggcagaacga ttgcatcaca agatctgccg agaagcctaa acaggctaaa
     9961 tctttcagct catctcttgt cattggtcct gtggtatctt gtgaaccgac agacgtcatt
    10021 cgaggctcgc aatattgccc cggtcgaacg ccttctacgc cacaagctcg ccctaccatt
    10081 ttttgagcaa gggtgtagcc tttgttactc tctgaaaccg actgcggttt aataaataca
    10141 tcactttcag gcaagccaag tgctactctg gctttatggg tcaaaccacg tccgataatc
    10201 agcggaattc gcccgcctgc acgcacttca tcaagcaata cttcggtttt tagctcaaat
    10261 tcggctaaga cttcatcgga gttgtgtttg caaattttgc ctgcataagg gtaaatgtcg
    10321 attacatcgc ccatattcag gttggttaca tccacttcga tcggtaaaga accggcatct
    10381 tctaatgtgt taaagaaaat cggggcaatt ttaccgccta acaccacccc accggcacgt
    10441 ttgtttggaa tgtaaggaat atcttccccc ataaaccaaa gcacggagtt ggttgcggat
    10501 ttacgagaag agccggtgcc gactacatca ccgacatagg ctaacgggaa acctttttct
    10561 tttaatgctt ccagttgctt aatcgggccg gtatgaccgt tttcatcggg gaaaataccg
    10621 tcacgttcat ttttcagcat tgctaatgcg tgaagtggaa tatcagggcg agaccaagcg
    10681 tcttgagccg gggaaagatc atcggtattg gtttcgcctg tgactttaaa taccgttacc
    10741 gttaattttt cggcaagttt cgggcgagag gtaaaccaat cggcattcgc ccaagattcc
    10801 aatacttgtt gtgcaaacgg attaccctga tctgcccgtt cttttacatc gtggaaatta
    10861 tcaaacatca ataatgtttt agataaggct tctaccgcaa tcggtgcaag ctcagggtta
    10921 tccaacgcag acaataaggt ttcaatgtta taaccacctt gcattgtgcc gagtaatttc
    10981 actgcgtgag caggcgaaat gagcggcgat gtggcaaccc ctttggtaat atcggctaaa
    11041 aaggcggctt taacataagc ggcttcatca acacctgccg gaatacgatt ggtaaaaaga
    11101 tccaataaaa agaccgcttg ttcagccggt gggtttttca ataattcaac cagttgagcc
    11161 gtttgttccg cagaaagtgg ctgaggcaca acacccagtg ccgcacgttc atcaacctgt
    11221 tgttgataat tttctataaa attttccatc atcattccct ctccaacttt acatattggc
    11281 aataatgtct tgtgcaaatt ctgaggttga gcgtagagtt accccctcca gcatttccgc
    11341 aaaatcaaag gtgacagttt tattggcaat ggttttagac accgctttta ccactaaatc
    11401 agccgcttca acccaaccta aatggcgtaa catcatttcc ccacttaaaa ttaatgaccc
    11461 aggattgcct ttattttgcc ctgcaatttt aggggctgtg ccgtgtgtgg cttcaaaaat
    11521 agccgcttca aacccaatat tcgctcccgg tgaaataccg attccgccta cttgtgcggc
    11581 taaagcatca gaaatatagt cgccgtttag gttcagtgta gcaatcacat catattcggt
    11641 tgggtgtaac aagatttctt gtaaaaaggc atcggcaatg ctgtctttta taatgatttc
    11701 ctcaccggtt ttcggattag tcaagctcat ccaagggcct ttatcaatta attttgcccc
    11761 aaattcttcc gcaacttggt agccccactc tttaaatgct ccttcggtaa atttcataat
    11821 gttaccttta tgcacaagcg tgagcgattt acggttgtta tcaattacat attgcaatgc
    11881 agcacgcacc aagcgttgtg tgccttgctt agaaaccggc ttaattccga taccgcaatc
    11941 ttcggtaaag cggatttttt tcacgcccat ctcttgttgt aaaaattcga tcactttatt
    12001 ggcttcaggc gaaccggcaa cccattctac accggcataa atatcttccg agttttcacg
    12061 gaaaatcacc atatccacca gctcagggtg tttaaccggg cttggcgtac cgtcataata
    12121 acgaattggg cgtaagcagt tgtataaatc taatccttga cgcatcgcca catttaaaga
    12181 acgaataccg ccacccaccg gtgtcattaa aggaccttta atcgccacgt gatattggcg
    12241 gataagctct aaggtttcat ccggcaacca agtgttctca ccatataatt tattcgcctt
    12301 ttcgcctgcg taaatttcca tccaagcaat ttttcgcttg ccttgatagg ctttttctac
    12361 cgccgcatct agcactgctt tcattgcagg agtaacatca acaccgatgc cgtcaccttc
    12421 aataaatgga ataatcggat tatccggaac ttgtaaagaa ccgtcttggt tcagttgaat
    12481 agtttcgcct tgtggaattt ggacttgtgt ttgcattgat tttacccccg taatgacgaa
    12541 aaagtagtga cgaaaaatga atgttgacaa tcagccaaca atggattaac tataaacagt
    12601 aaatttctaa atgtaaataa agcaaaatgg gctgagagag aatttgtgat ctaacgcaca
    12661 tttatgtaaa taaaatgtaa aaaatcgttg tgattctttt ggaaatcatc tagtttatct
    12721 tataaatctc aaataaatag gagtaagcta tgtcaaaagc aacattaaca ctcgaaacag
    12781 gtgaaaaact tgaactcaat atgcaaaaag gaaccttagg gtatcaaacg attgatattc
    12841 agcctttctt aaagcataag ttatttgctt atgatcccgg attggtttcg accgctgtat
    12901 gccgatccaa tatcacttat gttgatggcg atgaaggggt tttactctat cgaggctacc
    12961 cgattgacca attagccaaa cattctgatt acttagaagt cggttatatg ctgttattcg
    13021 gcgaacgccc taccaaagaa gaatacaaag acttcgttca actcatcaaa aaacacactc
    13081 ttgtacacga acaactaacc aaattcttct ccggtttccg ccgagattcg cacccaatgg
    13141 cggtgatgtg tggggtaagt ggagctttgg ctgccttcta ccacgacgcc attgatgtaa
    13201 acaaccaagc ccaccgtgaa ttaaccgcca ttcgtttgtt agccaaaatc ccaacccttg
    13261 cggcgatgtg ttataaatac tctatcggtc agccgtttat gttcccacaa aaccacttat
    13321 cttacgccgg caacttctta tatatgatgt ttgccactcc ttgtgaaccg tacgaagtga
    13381 accctgtgtt agagcgtgcg ttagaccgaa ttttcatttt acatgcagac cacgaacaaa
    13441 acgcttcgac ctcaaccgtg cgaaccgccg cttcatcagg tgcaaaccca tttgcttgca
    13501 ttgctgccgg tattgcctct ctctggggac ctgcacacgg aggagcaaat gaagcctgta
    13561 tcaatatgtt gaaagaaatc ggcactgtgg atcgcattcc tgaatttatt gctcgagcca
    13621 aagataaaaa tgacccgttc cgcttaatgg gctttgggca tcgtgtctat aaaaactacg
    13681 accctcgtgc gaaagtaatg cgtgaaacct gccacgaagt gttaaaagaa ctgaacattg
    13741 ataacccact atttgaagtg gcattggaat tagaacgtat tgcgttaagc gacccttatt
    13801 tcattgagca taaactttat ccaaacgtag atttctactc cggaatcgtg ctaaaagcca
    13861 tcggtattcc aacctcaatg tttaccgtaa tgtttgccct agccagaacc gttggctgga
    13921 ttgctcactg gaaagagatg tatctccaag gcaatatcaa aatcgttcgt ccacgtcaaa
    13981 tctacaccgg acatactaaa cgtgattttg agccaatgga taaatcataa gattggcaaa
    14041 aaatcgaaaa attttaaccg cttgtttcca caagcggtta tattttgcat aaaatttgca
    14101 aatcaggcta atttatttag cagttgtgtt ctaacatctt gaccattttc atcgcttttt
    14161 acagccataa taaataagcc ttttccttga cttaatttct cccaaagatt gccaattaag
    14221 gctttttctt tagaatcttc attacttttt aattgttccc ctttatattc cacaattaaa
    14281 attcgaccat caataagctc tacaataaaa tcagggtaaa aattctgatg agctaatggt
    14341 aaagaaaacc ctctttttac aggatttctt aaccaatcat cagaaaaact cagttgctgc
    14401 tgattaaaat ggtaagaaac ccgtttatct tccacatcaa tttcaaaact ttggctattt
    14461 tcttgtaatc taaatccatc aagtttggct ggataatcca ataaattcca actttggtaa
    14521 tctaatagca cttgtgaatc agctaagtcg aattcgcctt gaatattcat acacagttga
    14581 ggtattactt taaatatttc ccctttttcg gcaggagaag ataatatttc aactctattc
    14641 tggtgaattt gtaactgttg ctcaatttgc tcttttttct tacctgttgc agttcgaatc
    14701 aacgcttttt ctaacttttc acttaaatta ccttttactt gcactaaaat gtgaccttct
    14761 tgctcggtaa ttttaagttg agaacgtttt gcttcgctta aatcagacat ttcagggagt
    14821 tgcgttaatg ctaaaactgt tgtcggtgta tagaataaat ctccttcgtt tccaatccaa
    14881 ttttcttgtt gtgggatacg aagcatttca gctacttcta atgcttcaaa ccccattcca
    14941 atcaatttat cttgtaaatt acgagccgtt tcgccgaacg acttagagga aagcggagca
    15001 taagcacgat ttaaatcttc aatttgacgg tgtttagcat aaggcattcg caatactcgc
    15061 cctaatagct gctccgcttc cttgctagag gaaacatttt gtactgagca aaaaatataa
    15121 gcaaaagggc aatcccaccc ttcttttaat gcctcaaccg tgatgatgta attgatcttg
    15181 cattgtggat taaataaatc gatattatct aattcgtgtt gattacctat cacaatggca
    15241 atctcttctt catcaatttt taactcatca attaaatact gttttaagac ttctactgtt
    15301 actttgccgt ttttcggctc agcttgaaac aataaatcgg acgaacgtac tcgctctcat
    15361 actgtgcttt ttgtgctaat gctcctctat tgattacagc cccatctatt gcttgttgcc
    15421 agttgtgatg ttcggtcagc acaataggca atttgatcat ctcttctgct tttagatggc
    15481 ttgccgaaac gtgatacaac acattacttc ctgcttttct atctgtgttt ggcgtagcag
    15541 taaattctaa aatagctgat ggggaaagtt gagatagcac atcaaaagag agtgaagtcc
    15601 gagcattatg tgcttcatca acaatgacca aaggctgata agctcgcaac aaatttgcaa
    15661 aagaacactt aattttgccc gtttgtttgg aggttaaacc gttctcttgt agatcagtag
    15721 tggaaatctt ttctaaattt gcctgaatat ggggtagtaa acgctcaaaa tgagctgtta
    15781 atttttcatt aaaagcatag atttttcgcc catcttgatt ttctacccga aaattttgaa
    15841 tagtagaaac gattacaatc gccttattac caaaatcttg tgggcgaagt aaatcaaaat
    15901 cttcagactc aataaccatt acttctcggt taaaagtttt atcaagtact gcacggtaag
    15961 ggtgttgcgg attttttaat gcttctgtag tttgggtttt aattgtacga gaaggcactg
    16021 gccacaaggt aaccgggaaa tcgcaatcca aatactgctt tgcaatacga gcaatactat
    16081 gcgaggctaa caacgtttta ccgccaccag ttggaattcg tacacaaaca taaggcacat
    16141 cacgcaaatt actgtgttca cttgggatct tgtaactata ttcaggttga atttggctaa
    16201 atgcggtttt tgcatcagat tgcaaacaag ccgaaaaata gtggctgaca cggtttaatg
    16261 cctcattttg gtaatttttt aatttcattt ttttctccta ctattaacga gacattacat
    16321 catatggaat ctgtttaaat gtaattttct tttcagctaa ctgcacttct cctaaacggc
    16381 acgcttcgcc atataccaca atatccattc cctgttgaat aaattcagca aagtatggta
    16441 actccgccat taattttcgt gtcagaacat taccactctg cggacgttta tcgcctaaaa
    16501 ttccgttata taacaaatag taggctttgc cgttgaaagt gccgacaagc ggtgattttt
    16561 cgctgttttt ttgcaaaggg aaatgatttt ctaaatacca aatatgggcg gctaaatcgt
    16621 caaaacgaat gttcggatta agtgaaccga atgcgtcaaa tacttcctcg cctaactcac
    16681 aaaagcgaaa cgatccacca ccttgccaat ttactgcttt tgaaataccg ccttgctcac
    16741 cttcaattac ttttttcaac cgtgggacaa catgggtttt agcatgttcg ccaatctcaa
    16801 taccgatata acgacggttc attttatgag caactgctgc agttgtacct gagccaagaa
    16861 agctatcgag gacgagatca tatggttcag tcgatgcttc taatacaaat tagattaatt
    16921 tttcaggttt aggataatca aatgaatctt ctgcaatatc ctccccaaat aattctagat
    16981 gttcactagc agagtcttca tttgttgcca tatcataatg agctctgcta attaagttat
    17041 gaattttttt cttttccgca cttcgctcaa atactctcct t
//
LOCUS       DANLRW010000049        17075 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.049, whole genome shotgun sequence.
ACCESSION   DANLRW010000049 DANLRW010000000
VERSION     DANLRW010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 17075)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17075)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17075
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.049"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            278..3142
                     /locus_tag="PXA71_001359"
     CDS             278..3142
                     /locus_tag="PXA71_001359"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDL5105468.1"
                     /translation="MTKQFTMEDRFNPSAVEQALYQHWESQGYFKPSEDINAPSYCIA
                     IPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKIAA
                     EEGKTRHDYGREAFINKIWDWKAYSGGTISQQMRRLGNSIDWDRERFTMDEGLSNAVK
                     EVFVRLHEEGLIYRGKRLVNWDPKLHTAISDLEVENKESKGSLWHFRYPLANGAKTAD
                     GLDYLVVATTRPETMLGDTAVAVHPEDERYQALIGKSVILPLANREIPIIADEYVDRE
                     FGTGVVKITPAHDFNDYEVGKRHGLPMVNVMTLNADIRAEAEIIGTDGKPLSDYTAPI
                     PADYQGLERFAARKKIVADFEALGLLDQIKPHDLKVPYGDRGGVPIEPMLTDQWYVSV
                     KPLAEVATKAVEDGEIQFVPKQYENLYFSWMRDIQDWCISRQLWWGHRIPAWYDEQGN
                     VYVARDEAEVRAKHNLPADLPLKQDEDVLDTWFSSGLWTFSTLGWPEQTKELKMFHPT
                     DVLITGFDIIFFWVARMIMFTMHFIKDENGKPQVPFKTVYVTGLIRDEQGQKMSKSKG
                     NVLDPIDMIDGISLDDLLEKRTGNMMQPQLAEKIAKATRKEFAEGIVAHGTDALRFTL
                     TALASNGRDINWDMKRLEGYRNFCNKLWNASRYVLTNDKLDLSEGDVEFSLADRWIES
                     QFNRTVETFRTALSQYRFDLVANAIYEFTWDQFCDWYLELTKPIFFKGTDVQRRGASR
                     TLVNVLEKLLRLIHPVMPFITEEIWQKVKGFVGIEADTIMLQKFPQFDPLAIDETAES
                     QINFIKEVIVAVRNIRAESNIAPSKGLDLIARNFSADEVSILNANEVLLKSMAKLDSV
                     KVLENGENAPLSVAKLVANGEILIPMAGFINKEAELARLTKEMDKLKGEVARIEGKLS
                     NEAFVAKAPEQVIAKEREKMQEYLSGLEKLQVQYQEIEAL"
     gene            complement(3213..3806)
                     /locus_tag="PXA71_001360"
     CDS             complement(3213..3806)
                     /locus_tag="PXA71_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL5105469.1"
                     /translation="MLTDQDIFNRYQTKKSEFEKQADISLIGHSLFDMWGDMENGTPN
                     LAGKTVANLGLSGTSTRQYLDVITRQERIQHVGDNVFIFLGVNDIVKEPDYSPKQVLE
                     WIGEIVDSLRKINPNANFFLLEATPVNNITTTNNAAIKELNAYFEANIPSDLTYVKTW
                     EYFADKEGNLDLTLCHDGLHFTQAGYDRLEAILTKHL"
     gene            complement(3941..5395)
                     /gene="gnd"
                     /locus_tag="PXA71_001361"
     CDS             complement(3941..5395)
                     /gene="gnd"
                     /locus_tag="PXA71_001361"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating NADP(+)-dependent
                     phosphogluconate dehydrogenase"
                     /protein_id="HDL5105470.1"
                     /translation="MSQKGDIGVIGLAVMGQNLILNMNDNGFKVVAYNRTTSKVDEFL
                     EGAAKGTNIIGAYSLEDLAAKLEKPRKVMLMVRAGEVVDQFIEALLPHLEEGDIIIDG
                     GNSNYPDTNRRVKALAEKGIRFIGSGVSGGEEGARHGPSIMPGGDESAWQYVKPIFQA
                     ISAKTDKGEPCCDWVGRDGAGHFVKMVHNGIEYGDMQLICEAYQFLKDGLGLSYDEMH
                     EIFKEWKNTELDSYLVDITTDILAYKDEDGEPLVEKILDTAGQKGTGKWTGINALDFG
                     IPLTLITESVFARCVSAFKDQRVAASRLFNKEIGKVEGDKKVWVEAVRRALLASKIIS
                     YAQGFMLIREASEQFGWDINYGNTALLWREGCIIRSRFLGNIRDAYEANPYLVFLGSD
                     PYFKDILENCLADWRKVVAKSVEIGLPVPCMASAITFLDGYTSARLPANLLQAQRDYF
                     GAHTYERTDKARGEFFHTNWTGRGGNTASTTYDV"
     gene            complement(5478..6167)
                     /locus_tag="PXA71_001362"
     CDS             complement(5478..6167)
                     /locus_tag="PXA71_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HDL5105471.1"
                     /translation="MKTLGILGGMSAESTVSYYLDINRSVNKVLGGNSSAKILISSVN
                     FEEIVQCQKQGNWQAAAEILSEQARLLEQAGAEGILLATNTMHKIADQISSHISVPFL
                     HILDCVAEAISAQGLQKVALLGTKFTMSDNFYKDGLLERGITSIVPDEETQQEIHRII
                     FEELCLGKITESAKAFYLQTIQQLSEQGAEGVILGCTEIGLLINQNDNPLPFFDTAAL
                     HSQMAVEFILG"
     gene            complement(6177..7064)
                     /locus_tag="PXA71_001363"
     CDS             complement(6177..7064)
                     /locus_tag="PXA71_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6N domain-containing protein"
                     /protein_id="HDL5105472.1"
                     /translation="MNPIQLIEPNINSKIFTIRGEQVMLDVHLAELYQVDTRTFNQAV
                     KRNEERFPDIFRFQLTENEWLSLRSQFVILNENSGRGQHRKYLPYVFTEQGIAMLSAV
                     LRSEVAVQVSIKIMQAFVQMRHLLQTNSGLVQRLESVERKQLEMSGQLEQVFQSLEGN
                     KPKMQGVFFEGETFNAYQFVTELVRGAKSSLILIDNYVDDTVLTLFTKRSHNVSVTIY
                     TKQISKQLALDLEKYNSQYAHINVKIFDKSHERFLIIDEKELYHIGASLKDLGKKWFA
                     FSKMDLSMSRILEKLAENQ"
     gene            complement(7240..7938)
                     /gene="pgl"
                     /locus_tag="PXA71_001364"
     CDS             complement(7240..7938)
                     /gene="pgl"
                     /locus_tag="PXA71_001364"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HDL5105473.1"
                     /translation="MNKVIFPTAQAAVEQIAKEFIEYSHQNRPVHISLSGGSTPKLLF
                     KTLAQAPFNTEIQWQNLHFWWGDDRMVAPTDPESNYGEVQKLLFDHIDIPSENIHRIR
                     GEENVEQELARFSAELTACVPNLAFDWIILGMGTDGHTASLFPHQTDFNDQNVAVIAK
                     YPETGQIRISKTASLIEKAKRITYLVTGASKAEILKEIQTTPAENLPYPAAKIQAENG
                     VTEWYLDSEAANLL"
     gene            complement(8078..9565)
                     /locus_tag="PXA71_001365"
     CDS             complement(8078..9565)
                     /locus_tag="PXA71_001365"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HDL5105474.1"
                     /translation="MNAENSCIVIFGASGDLTFRKLIPALYNLYKIGRLGEHFSVLGV
                     SRSELTDESFRQKMRDALVKFEKASGEELDKFCEHLYYQAVNTSDAVDYAKLLPRLDE
                     LHDKYQTAGNTLYYLSTPPSLYGVIPECLAAHGLTTEEFGWKRIIVEKPFGYDIETAK
                     KLDVQIHKCFEEHQIYRIDHYLGKETVQNLLVLRFSNGLFEPLWNRNFIDYVEITGAE
                     SIGVEDRGGYYDGSGAMRDMFQNHLLQVLAMVAMEPPAIINANSMRDEVAKVLYCLHP
                     LTEEDVKHNVVLGQYARGTVDGKEVPAYLEEKGVPADSNTETFMAVKCKIDNWRWAGV
                     PFYVRTGKRLPTRVTEIVIHFKTTPHPVFSQNAPENKLIIRVQPDEGISMRFGLKKPG
                     AGFEAKEVSMDFRYSDLSSSSSLLTAYERLLLDALKGDATLFARTDAVHACWKFVQPI
                     LAYKANRGRVYEYESGTWGPTEADKLIARHGKVWRKPSGTMKKKV"
     gene            complement(9640..10458)
                     /gene="cysQ"
                     /locus_tag="PXA71_001366"
     CDS             complement(9640..10458)
                     /gene="cysQ"
                     /locus_tag="PXA71_001366"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HDL5105475.1"
                     /translation="MQTLTQPLLENIINIAKAAGEQLKQLYARSVAIKIKADCTPVTE
                     ADLIISQFLTERLKQLTPDIPVLSEEFCDIPFAERQQWQEYWIIDPIDGTQQFINRTG
                     QFSVVIALVQKREGRNQPVLGVIHAPILGKTYFSMEGSGSFLQENGEIRPLVKPKRAE
                     NALLIVTVGSDLHAEQAKNAISAPQIECVKYGSGSLKAGLVAEGKADCYIRFGDTGEW
                     DTAVAEVLLSEMGGKIFDFNFSPLTYNQRESLINPYFVMVADGSIDWDKIFLFK"
     gene            complement(10472..11014)
                     /gene="nudE"
                     /locus_tag="PXA71_001367"
     CDS             complement(10472..11014)
                     /gene="nudE"
                     /locus_tag="PXA71_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HDL5105476.1"
                     /translation="MIKQLPEILNIKTVAKSRIFEVQAVDLRFSNGEERTYERLTPNR
                     RSSVMVIPIQNNELIFVKEYAVGSERYELGFPKGIVDAGEEPIESANRELQEEIGFGA
                     KKLDFLRSLYSSPSHMYGLMHLFLAQDLYPSKLEGDEPEPLEIVRYPLDKIDQLLADP
                     DFAEARNLSALFMLREYLKK"
     gene            11102..11518
                     /gene="hslR"
                     /locus_tag="PXA71_001368"
     CDS             11102..11518
                     /gene="hslR"
                     /locus_tag="PXA71_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HDL5105477.1"
                     /translation="MKNKHEKEQNDAEVRLDKWLWAARFYKTRSIAKAMIEGGKVHYN
                     GQRAKVSKAVEIGAIIKLRQGNEEKEVEVLALSDQRRGAPEAQLLYSETEKSIKHREA
                     MAFARKANALSMPHPDRRPNKKERRDLIKFKEQEFS"
     gene            11762..12655
                     /gene="hslO"
                     /locus_tag="PXA71_001369"
     CDS             11762..12655
                     /gene="hslO"
                     /locus_tag="PXA71_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HDL5105478.1"
                     /translation="MNYTKDNDKLYRYLFKDRAVRGEWVRLNNTFTETLNTHHYPKAV
                     QNLLGEMLVATSLLTATMKFNGNITVQIQGDSPLKLAVVNGNDQQQLRALARVQADIA
                     DTASLAEMIGNGVLVISIIPTDGERYQGVIALDKPTIRECLEDYFARSEQLQTHLVIR
                     TGEFEGKAVAGGMLLQIMPDGTGSRDDFEHLATLTETVKDEELFGLEAEELLYRLYHE
                     EQVEVYPPQDTEFKCGCSRERSGSALLLVPAEEIEEMLEEKQGVIDMQCECCGTQYFF
                     DKAAIEGFKEETEKLSKLGLN"
     gene            complement(12729..13367)
                     /locus_tag="PXA71_001370"
     CDS             complement(12729..13367)
                     /locus_tag="PXA71_001370"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDL5105479.1"
                     /translation="MQNKIDWQKVDGLLPVIVQNAQTCEVLMLGYMNQQALEKTLAEK
                     RVTFYSRTKQRLWTKGETSGNFLNVVDMSLDCDNDTLLILANPIGETCHTGAESCFHQ
                     FEQEQPDWIFFSKLERMIAERKNADPESSYTAKLYAKGTPKIVQKVGEEAVESVIAAM
                     KNDREELVGEVADLMYHLTVLLHNADLSWAEINAKLKERHKGIGLHPEGSNK"
     gene            complement(13395..13781)
                     /locus_tag="PXA71_001371"
     CDS             complement(13395..13781)
                     /locus_tag="PXA71_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDL5105480.1"
                     /translation="MIKITALDHLVLTVADMQKTIDFYTTILGMQEITFGDNRKALLF
                     GTQKINLHQKGAEILPNAQNADCGTADLCLLTVTPLQEVIYVLQRHQVEILEGGIVPR
                     TGAVGKIESVYCRDPDGNLIEISLYV"
     gene            complement(13778..14551)
                     /gene="hisF"
                     /locus_tag="PXA71_001372"
     CDS             complement(13778..14551)
                     /gene="hisF"
                     /locus_tag="PXA71_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005624689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDL5105481.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAQRYAQEGA
                     DELVFYDITASSDSRTVDKSWVERVAQVIDIPFCVAGGIKTIADAEQIFAFGADKISI
                     NSPALANPELITELAKRFGVQAVVVGIDSWFEAETGKYWVNQYTGDEKRTRQTEWQLL
                     DWVEEVQKRGAGEIVLNMMNQDGVRNGYDLVQLKKVREVCQVPLIASGGAGEMVHFRD
                     AFIEANVDGALAASVFHKQIINIGELKEYLAKEGVEVRR"
     gene            complement(14533..15282)
                     /gene="hisA"
                     /locus_tag="PXA71_001373"
     CDS             complement(14533..15282)
                     /gene="hisA"
                     /locus_tag="PXA71_001373"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDL5105482.1"
                     /translation="MQKSIIIPALDLIDGQVVRLHQGDYAKQTTYADDPIAQFADYLA
                     QGAEQLHLVDLTGAKNPAQRQTALIGKIIRETHCKIQVGGGIRTEQDVADLLAVGANR
                     VVIGSTAVKEREMVKGWFKKYGAEKFVLALDVNIDAIGQKIIAMSGWQEASGVSLEEL
                     IEDYQTVGLQHVLCTDISRDGTLAGSNVDLYREICAKYPEIQFQSSGGIGSLADIKAL
                     CGTGVAGVIVGRALLEGKFNVAEAIECWQNG"
     gene            complement(15452..16297)
                     /locus_tag="PXA71_001374"
     CDS             complement(15452..16297)
                     /locus_tag="PXA71_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor protein"
                     /protein_id="HDL5105483.1"
                     /translation="MNEIKLFENSQIRSVWDSEKEEWFFSVVDIIEVLTQSSNPRRYW
                     SDLKRKIKDEEGGIELYEKIVQLKLKAPDGKMRETDATDLQGIFRIIQSVPSPKAEPL
                     KMWLAEVGKERIDEIIDPELTIDRALATYLKKGYSREWINQRLQAIQVRKELTDTWQD
                     HGVQVGREFAILTNEITQAWSGMTTRQYKDFKGLKKESLRDNMTTTELVLNMLAEAAT
                     KDIAQISHPQGLEENKTVAKRGGNVAKVARESLEAETGKPVITQQNAIDFAAVIEQVA
                     KQVKK"
     gene            complement(16396..16989)
                     /gene="hisH"
                     /locus_tag="PXA71_001375"
     CDS             complement(16396..16989)
                     /gene="hisH"
                     /locus_tag="PXA71_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015431920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDL5105484.1"
                     /translation="MTNLTIIDTGCANLSSVKFAFDRLGIRAEISRDLNKIQSADKLL
                     LPGVGTAAAAMAILHDRRLIDTIRNATQPMLGICLGMQLMTDFSHEGDVATLNLMSGK
                     TERLPECGLPLPHMGWNKVQYQADHPLFHDIEQGNHFYFVHSYGVLPNENTIATCDYG
                     VPFSAAIASQNFYGVQFHPERSGEAGAKLLRNFVENV"
BASE COUNT         4719 a         3965 c         3553 g         4838 t
ORIGIN      
        1 aagataaaac cggtatattt cctccgacaa tcaaattaat caatttttca tccaatatag
       61 aagatgatat taaagagatt gagcaaagct gtttaaatag ccgaaagcaa ttatgggaaa
      121 aacgaagaaa aatgcaagag gaacaaaaaa ttcccaatta atcttttagt tgaccttaat
      181 ttaaataact aattacctat aaaagcattt acggcaaaga tcttttttat aagattaagc
      241 tagtgaaaaa attattaaac aagagaaaac aaaaccaatg acaaaacaat tcacaatgga
      301 agaccgtttt aacccttccg ctgtagagca agcgctctac caacactggg aatcgcaagg
      361 ctattttaag ccgagtgaag atattaatgc accgagctac tgtatcgcta ttccgccgcc
      421 gaatgtgacg gggagtttgc atatggggca cgctttccag caaaccttga tggatacgct
      481 gattcgtttt aaccgtatgg agggcaacaa taccctttgg caaacaggaa ctgaccacgc
      541 agggattgcc actcagatgg tggtggagcg taaaatcgca gcggaagaag gtaaaacccg
      601 ccacgattat gggcgtgaag cctttatcaa caaaatctgg gattggaaag cctattcggg
      661 cggcacgatc agccagcaaa tgcgtcgctt aggcaactcg attgactggg atcgtgagcg
      721 ttttacgatg gacgaaggct tatccaatgc ggtaaaagag gtgttcgttc gcttgcacga
      781 agaaggcttg atttaccgtg gcaaacgcct cgtaaactgg gatccgaaac tgcatactgc
      841 gatttctgac ttggaagtgg aaaacaaaga aagcaaaggc tcgctgtggc atttccgcta
      901 tccgctggct aatggtgcaa aaaccgcaga cggcttggat tacttagtgg tggcaacgac
      961 ccgtcctgaa acgatgttgg gcgatactgc ggtggcggtt caccctgaag atgagcgtta
     1021 tcaagctctg attggcaaaa gcgtaatcct accgcttgcc aaccgtgaaa tcccgattat
     1081 tgccgatgag tatgtggatc gtgagttcgg tacgggcgtg gtaaaaatca cccctgccca
     1141 cgatttcaac gactacgaag tgggcaaacg ccacggcttg ccgatggtga atgtgatgac
     1201 cttaaatgcc gatattcgtg cagaggccga aattatcggc acagacggta aaccgctttc
     1261 cgactacacc gccccaattc ctgccgacta tcaaggctta gagcgttttg ccgcgcgtaa
     1321 gaaaattgtg gcagattttg aagctcttgg gctgttagat caaatcaaac cacacgactt
     1381 aaaagtgccg tatggcgacc gtggtggcgt gccgattgag ccgatgctga ccgaccaatg
     1441 gtatgtgtct gtcaaacctt tggcggaagt cgcgaccaaa gcggtggaag acggcgaaat
     1501 ccaattcgtg ccgaaacagt acgaaaacct gtatttctct tggatgcgtg atattcaaga
     1561 ctggtgtatc tctcgccaat tatggtgggg acaccgcatt ccagcgtggt atgacgagca
     1621 gggcaatgtt tatgtagcac gagatgaagc ggaagtgcgt gcgaaacaca acttacctgc
     1681 ggacttacca ttaaagcaag atgaagacgt actggatact tggttctcgt ctggtctatg
     1741 gacgttctca acgttaggct ggccagaaca aaccaaagaa ctgaaaatgt tccacccgac
     1801 cgatgtgctg attaccggtt ttgacatcat cttcttctgg gtggctcgta tgattatgtt
     1861 cacgatgcac ttcatcaaag atgaaaacgg caaaccgcaa gtgccgttca aaaccgtgta
     1921 tgtaacaggc ttgatccgtg acgagcaagg gcagaaaatg tcgaaatcga aagggaacgt
     1981 gttagacccg attgatatga ttgacggcat cagtctcgac gatttgctcg aaaaacgtac
     2041 aggtaatatg atgcagccac aactggcaga aaaaatcgct aaggcaaccc gcaaagaatt
     2101 tgccgaaggg attgtggcac acggcacaga cgctctgcgt ttcaccctca ccgcccttgc
     2161 cagcaacggt cgagacatca actgggatat gaaacgttta gaaggctacc gcaacttctg
     2221 caacaaactg tggaatgcga gccgttatgt gctgaccaat gacaagttgg atttaagcga
     2281 aggcgacgtg gaatttagcc ttgccgatcg ttggattgaa agccaattca accgcacggt
     2341 ggaaactttc cgcaccgcac tcagccaata ccgtttcgac ttagtggcaa atgcgatcta
     2401 cgaatttact tgggatcaat tctgcgactg gtatttagag ctgaccaaac ctattttctt
     2461 caaaggcaca gatgtacaac gccgtggcgc aagtcgcacg ctggtgaatg tattggaaaa
     2521 actcctgcgt ttaatccacc cagtaatgcc gttcatcacc gaagaaatct ggcagaaagt
     2581 gaaaggcttt gtaggtattg aagccgatac cattatgttg caaaaattcc cacaatttga
     2641 cccgcttgcc attgatgaaa ccgccgaaag tcaaatcaac tttatcaaag aagtgattgt
     2701 ggcggtgcgt aacattcgtg cggaaagcaa catcgcacca agcaaaggtt tagatttaat
     2761 cgctcgtaat ttctctgcgg acgaagtctc tattctcaac gctaacgaag tgttgctcaa
     2821 atcgatggca aaacttgata gcgtgaaagt gctggaaaat ggtgaaaatg caccgctatc
     2881 ggtagcgaaa ctggtcgcaa atggtgagat cttgatccca atggcaggct ttatcaacaa
     2941 agaagctgag ctagctcgcc tcaccaaaga gatggataaa cttaaaggtg aagtggctcg
     3001 cattgaaggc aaactttcaa acgaagcctt tgtcgccaaa gccccagagc aagtcatcgc
     3061 caaagagcgt gaaaaaatgc aagagtacct gagtggatta gagaaattgc aggtgcagta
     3121 tcaagagatt gaagcactgt aattaactaa caagcggtca ggatttggaa attttttgct
     3181 aattcagacc gcttgcttat tgaagctttt cattataaat gtttggttaa aatcgcctct
     3241 aggcggtcat agcctgcttg ggtgaagtgt aatccatcgt ggcataaagt tagatctaaa
     3301 ttcccttctt tgtcagcaaa atattcccac gtttttacat aagtcaaatc agatggaata
     3361 tttgcctcaa aatacgcatt gagctctttt attgcagcat tattggtggt ggtaatatta
     3421 ttaaccggtg tggcttccaa tagaaaaaag ttggcatttg gattaatttt gcgaagagaa
     3481 tccacaattt cgccaatcca ctctaacact tgttttggcg agtaatccgg ctcttttaca
     3541 atgtcattaa cgcctagaaa aataaataca ttatcgccaa cgtgttgaat tcgctcttgt
     3601 cgggtaatca catccaaata ttggcgggtg ctggtgcctg ataagcccaa attggcaact
     3661 gtttttcctg ctaaattcgg cgtgccgttt tccatatcgc cccacatatc aaacagggaa
     3721 tgcccaataa gggaaatatc tgcctgtttt tcaaattctg atttttttgt ttggtagcga
     3781 ttaaaaatat cttgatcggt aagcataggt tctccttaaa tataaatgaa aaatcgctcc
     3841 attattatac aaacttgtaa acattcactc caagatattt tgaagaaaaa tccaataaaa
     3901 aagccactta atatcgaatt aagtggctca aaaagattaa ttacacatca taagtggtcg
     3961 atgcggtatt accgccacgt cctgtccagt tggtgtggaa gaactcaccg cgagctttgt
     4021 ctgtacgctc ataagtatga gcaccaaagt agtcacgttg tgcttggagt aagtttgccg
     4081 gtaaacgtgc cgaggtgtag ccatctaaga aggtaatggc tgacgccata caaggtacag
     4141 gtaaaccgat ttccaccgat tttgccacta ctttacgcca atctgccaag cagttttcca
     4201 aaatatcttt gaagtatggg tctgagccta agaacactaa atatgggttg gcttcatacg
     4261 catcacgaat gttgcctaag aaacggctgc ggataataca accttcacgc cataataggg
     4321 cggtattgcc gtagttgatg tcccaaccga attgctcaga agcctcacga atcaacataa
     4381 agccttgtgc ataagagatg attttggaag caagtaacgc acggcgtacc gcttctaccc
     4441 atactttttt gtcgccttca actttaccaa tttctttgtt aaacaatctt gaagccgcaa
     4501 cacgttgatc tttaaacgca gatacgcaac gggcgaatac cgactcggta atcagtgtta
     4561 atggaatgcc gaaatcaagg gcgttaatac cagtccattt acccgttcct ttttgacctg
     4621 cggtgtcgag aattttctct accaatggct cgccgtcttc gtctttgtag gcaagaatat
     4681 cagtggtaat atccaccaaa tagctgtcta attcggtgtt tttccactct ttaaagattt
     4741 cgtgcatttc atcatagctt aaacctaaac catcttttaa gaattggtag gcttcacaaa
     4801 ttaactgcat atcgccatat tcgataccgt tgtgaaccat tttcacaaaa tgccctgctc
     4861 cgtcacgacc aacccagtca caacaaggct cacctttgtc ggttttggct gaaattgctt
     4921 ggaaaatcgg cttcacatat tgccacgcag attcatcacc gcccggcata attgacggcc
     4981 cgtgacgagc accctcttcg ccgcccgata cacctgagcc gataaagcga atgccttttt
     5041 ccgctaacgc tttcacacgg cggttggtgt ccggatagtt tgagttaccg ccatcaatga
     5101 tgatgtcgcc ttcttctaaa tgtggcagaa gagcctcgat aaactgatcc accacctcac
     5161 cggcacgcac cattagcatc actttacgcg gtttttccaa cttcgccgct aaatcttcta
     5221 acgagtaagc accgataatg ttcgtgcctt tcgccgcacc ttctaagaac tcatccactt
     5281 ttgaagtagt gcggttgtac gccaccactt taaagccgtt gtcattcata ttcaaaatta
     5341 aattttgacc cattacggcg agtccaatca cgccgatatc gcctttttgt gacattgttt
     5401 gctcctattg tttttgattc tatgcaagcg gtcgaattgg taaaattttt tgcaaatttg
     5461 accgcttgta acatttatta acctaaaata aactccaccg ccatttggct gtgtaatgct
     5521 gctgtatcga aaaacggtaa cggattgtcg ttttggttaa tcagcaaccc gatttcggta
     5581 caacctaaaa tcacaccttc tgcaccttgt tcactaagtt gttgaatagt ctgaagataa
     5641 aacgctttgg cactttcagt aatcttgcct aaacagagtt cctcgaaaat aatgcgatga
     5701 atttcttgtt gcgtttcctc atctggtact attgatgtga taccacgctc caataaaccg
     5761 tctttgtaaa aattatcact catagtaaat tttgtgccaa ggagtgctac tttctgcaga
     5821 ccttgagctg aaatcgcctc agccacacag tccaaaatat gcaaaaacgg cacagagata
     5881 tggctactaa tttgatcggc aattttgtgc attgtgttgg ttgccaataa aatgccttct
     5941 gctccggctt gttctagcaa tctagcttgt tcagataaaa tttcagcggc tgcttgccaa
     6001 tttccctgct tttggcattg tacaatctct tcaaaattga cactcgaaat taaaatcttg
     6061 gcactgctat ttccacctaa tactttattc accgagcgat taatatctaa ataataagaa
     6121 accgtgcttt ccgcactcat tccacctaaa atgccgagtg ttttcattaa tataccttat
     6181 tgattttccg ctaacttttc taaaatgcgg ctcattgata aatccatttt agaaaaagcg
     6241 aaccatttct tacctaaatc tttaagtgat gcaccgatat gataaagctc tttttcatca
     6301 ataatcaaaa atcgctcgtg agatttatca aatattttca cattaatgtg agcatattgg
     6361 ctgttatatt tttccaaatc taatgcaagt tgcttagata tttgtttcgt ataaatcgta
     6421 actgatacgt tatgcgatcg tttcgtaaat aaagttaaaa cggtatcatc tacatagtta
     6481 tcaattaaaa tcagcgatga ttttgcacct ctcactaatt ccgtaacaaa ctgataagcg
     6541 ttaaaggttt caccttcaaa gaaaacccct tgcattttag gcttattgcc ttcaagagat
     6601 tgaaacacct gctctaactg cccagacatc tccaactgtt tacgctctac actttctaag
     6661 cgttgtacca aaccactatt tgtttgcaaa agatgacgca tttgcacaaa ggcttgcata
     6721 atcttaatgc taacttgcac cgcaacttca ctacgcaata ctgccgaaag cattgcaatg
     6781 ccttgctcgg taaagacata aggaagatat ttcctatgtt ggccacgccc actattttcg
     6841 tttaagatca caaattgtga tcttaaagat agccattcgt tttctgttaa ttgaaaacga
     6901 aatatgtcag gaaatcgctc ttcattccgt tttactgctt ggttaaaggt tcgagtatct
     6961 acctgataaa gctctgccaa atgaacatct agcattactt gctcgccacg aatagtaaaa
     7021 attttagagt taatgtttgg ttcaattaat tgaattggat tcatctttct tccttattct
     7081 tcagtgaaga tcacttttgt gatctcaaaa taagaaagac tatgccaatt tttggcctat
     7141 accacgagca gatttttctg ctttttcgat gaatatcaca aaaatacttt gcaacatttt
     7201 tctaaaattt aaccgcttgt aaaggtcact gattgtgacc tagagtaagt tagccgcctc
     7261 actatccaaa taccattccg ttaccccatt ttccgcctga attttggcgg caggataagg
     7321 taaattttct gccggagtgg tttggatttc ttttaaaatt tccgctttgc ttgctcctgt
     7381 gaccaagtaa gtgatccgtt tggctttttc aattaaagat gccgttttgg aaatgcggat
     7441 ctgccctgtt tctgggtatt tggcgatcac ggcaacgttc tgatcattaa aatctgtttg
     7501 atgtgggaac agtgaggcgg tatgcccgtc tgttcccatt cctaaaataa tccaatcaaa
     7561 cgccaagttc ggcacacaag cggtcaattc tgccgaaaat cttgcaagtt cttgttctac
     7621 attctcttca ccacgaatgc ggtgaatatt ttcgcttgga atgtcgatgt gatcgaacag
     7681 taatttctgc acttcgccgt agttactttc gggatcggtt ggggcaacca ttcgatcatc
     7741 cccccaccag aaatgcaggt tttgccattg aatttcggta ttaaacggtg cttgagctaa
     7801 ggttttgaat aataatttgg gggttgaacc accggaaagg gaaatatgca ccgggcggtt
     7861 ttgatggctg tattcaataa actctttagc aatttgttca accgcagctt gggcggtggg
     7921 gaaaataact ttattcataa tttgcctcgt tagatcaccc ctctttagaa aagaggggag
     7981 ggggagattt gattacgatt tcaatatttc gtatgagcgt atataacttc tgccaaatct
     8041 cccctagccc ctctttgcta aagaggggaa ctgaaattta cactttcttc ttcattgtac
     8101 cggacggttt tcgccatact ttgccgtgtc tggcgattaa tttatctgcc tcggttggcc
     8161 cccaagtgcc ggattcatat tcatacacac gcccacgatt agctttgtag gctaaaatcg
     8221 gttgcacaaa tttccaacaa gcgtgtacag catcagtacg ggcaaataag gttgcatcac
     8281 ctttaagtgc gtctaatagt aagcgttcat aagcggtgag taagcttgat gatgaactta
     8341 aatcagaata gcggaaatcc attgagactt ctttcgcttc aaagcctgct cccggttttt
     8401 tcaagccgaa acgcattgaa atgccttcgt ccggttgcac acgaataatc aatttatttt
     8461 ccggagcatt ttggctaaat accgggtgtg gtgtagtttt aaaatgaatt acgatttccg
     8521 tcacacgggt tggtaagcgt ttaccggttc gcacatagaa cggcacacct gcccaacgcc
     8581 agttatcgat tttacatttt accgccataa aggtttcagt gttggaatca gccggcacgc
     8641 ctttttcttc caagtaagcc ggcacttctt tgccgtctac cgtgccacga gcatactgac
     8701 ctaacaccac attgtgttta acgtcttctt cagttaacgg atgcaagcaa tatagcactt
     8761 ttgcgacttc atcacgcatt gaattagcat taataattgc cggtggctcc attgcaacca
     8821 tggctaatac ttgcaataag tggttttgga acatatcacg cattgccccc gagccatcat
     8881 agtaaccgcc acgatcttca acgccgatgg attctgcccc ggtaatttcc acataatcaa
     8941 taaaattacg gttccaaagc ggttcaaata agccgttaga aaaacgtaaa acgagtaagt
     9001 tttgtaccgt ttctttacct aaatagtggt cgatacggta gatttgatgc tcttcaaagc
     9061 atttgtggat ttgtacgtct aattttttgg cggtttcgat atcgtagccg aatggttttt
     9121 caacaataat ccgtttccag ccaaactctt cggtagttaa gccgtgagcg gctaaacatt
     9181 ccggaatcac gccatataaa cttggtggcg tggagaggta ataaagcgtg ttaccggctg
     9241 tttgatattt atcgtgtagc tcatcaagac gaggcagcaa cttggcataa tccactgcat
     9301 cagaggtatt tacagcttgg taataaagat gttcgcaaaa tttatctaat tcttcaccgc
     9361 ttgctttttc aaatttgact aacgcatcac gcattttttg gcggaaagat tcgtcggtta
     9421 attctgaacg agaaacacct aggacggaaa aatgctcgcc caatctgcca atcttatata
     9481 agttataaag agcaggaatt aatttacgaa aagttaagtc accggaagca ccaaaaatga
     9541 cgatacagct attttcagca ttcatttatt tatcctattg ctaattgtta aaattttgtt
     9601 gggtgcaaga ttatcataaa aattgctaat cggaactacc tatttgaata aaaatatttt
     9661 atcccaatct atcgagccgt cagccaccat cacaaaataa ggattaatca aactttctcg
     9721 ctgattataa gtcagcggcg aaaaattaaa gtcgaaaatt ttgccgccca tttcacttaa
     9781 cagcacttct gccacagcag tatcccattc gccggtgtca ccaaaacgga tataacaatc
     9841 ggctttccct tctgccacta aaccggcttt tagactgccc gaaccatatt ttacacactc
     9901 aatttgtggg gctgaaatgg catttttagc ttgttctgca tgtaaatcgc tgcctacggt
     9961 aacaatcaaa agggcattct ccgcacgttt cggtttgaca agcggtcgaa tttctccatt
    10021 ttcttgcaaa aagctaccgc taccttccat actaaaatag gtttttccta atatcggagc
    10081 atgaataacg cccagcaccg gctgatttct accctcacgt ttttgcacta acgcaatcac
    10141 cactgaaaat tgaccggtgc ggttaataaa ctgttgtgtg ccgtcaatcg ggtcgataat
    10201 ccaatattct tgccattgtt ggcgttcggc aaacggaata tcgcaaaact cttccgataa
    10261 taccggaata tctggtgtga gttgcttcaa gcgttcagtt aaaaattggc tgataatcag
    10321 atccgcttcc gtcaccggtg tgcaatcggc tttgatttta attgccaccg agcgggcata
    10381 aagctgcttt aactgctcac cggctgcttt ggcaatattg ataatattct cgagtagggg
    10441 ttgagttagc gtttgcataa tagctccttg cctatttttt taagtattct cgtagcataa
    10501 atagagcgga caaattccgt gcttcggcaa aatcaggatc tgccaataat tgatcaattt
    10561 tatccaacgg ataacgcaca atttccagcg gttcaggctc atcgccttcc aattttgatg
    10621 ggtacagatc ttgtgccaaa aacaggtgca ttaagccgta catatggctt ggcgaactgt
    10681 aaagcgaccg cagaaaatct aattttttcg ccccaaaacc aatttcttct tgtaattcac
    10741 ggttcgcact ctcaatcggc tcttcacctg catccacaat gcctttcgga aaacccagct
    10801 cgtaacgctc cgagccgacc gcatactctt tcacaaaaat cagctcgttg ttttgaatcg
    10861 gaatcaccat taccgaagaa cggcgattcg gcgtaagtcg ttcgtaagtt cgctcttcgc
    10921 cattagaaaa gcgtaaatcg accgcttgca cctcaaaaat gcgagatttc gctactgttt
    10981 taatgttcaa aatttcagga agttgtttta tcattttatc tcaccttttt gagttatttt
    11041 agttgaaaaa tctcactttc gctctaatat ttcgactatt gttttgattt taaggcagaa
    11101 aatgaaaaat aaacacgaaa aagaacaaaa cgacgccgaa gttcggctag ataaatggct
    11161 ttgggcggct cgtttttata aaacccgttc gattgccaaa gcaatgattg aagggggtaa
    11221 agtccattat aatgggcaaa gagctaaagt tagcaaagcg gtggagatcg gtgccatcat
    11281 caaacttcgc caaggcaatg aagaaaaaga ggtggaagtg ttagccctca gtgaccaacg
    11341 ccgaggggct ccggaagccc aactgctcta cagtgaaacc gaaaaaagca ttaaacaccg
    11401 tgaggcaatg gcatttgccc gcaaagcgaa tgctctttca atgccacacc ctgatcgccg
    11461 tccaaacaaa aaagaacggc gggatttaat caaattcaaa gagcaagaat ttagctaagc
    11521 ccttgcaatc agaaaaataa tccctatatt gaatatccta agtaggggcg aaaaattttt
    11581 cgcccctata taattatttc gggcgaacat tgattcgccc ctacagcgtt cgatttgcac
    11641 atttttagcc acaaaatgca atgcattttg aacgttggct ttgccaacgg ctccgtagga
    11701 gcgaacaaaa ttagaaataa ttttgtgagt aataatcgac cgcttgcaac gaggaatcaa
    11761 aatgaattac accaaagaca atgacaaact ctaccgctat ttattcaaag accgagcggt
    11821 acggggcgaa tgggtgcgtt taaacaacac ctttaccgag accttaaaca cccatcacta
    11881 ccctaaagca gtacaaaatt tactcggaga aatgttagtc gcaaccagtt tgctgactgc
    11941 aacaatgaaa tttaacggca acattactgt gcagattcaa ggtgacagcc cgttaaaatt
    12001 ggcggttgtg aacggtaacg accaacagca actccgtgct ttagcccgtg ttcaggcaga
    12061 tattgcagac acagcctcgt tagcggaaat gatcggcaat ggtgtattag tgatttctat
    12121 tatcccaacc gatggtgaac gttatcaagg ggtgattgct ctcgataaac caaccattcg
    12181 tgaatgttta gaagattact tcgcccgctc cgagcaatta caaacccacc tcgttatccg
    12241 cacaggcgaa tttgaaggca aagcagtggc aggcggtatg ttgctacaaa ttatgccgga
    12301 cggcacaggc tcaagagatg attttgagca tttagccacg ctcactgaaa ccgtaaaaga
    12361 tgaagagtta tttggtttag aggcagaaga attgctctat cgcctctacc acgaagagca
    12421 agtagaagtt tacccaccac aagatactga atttaaatgt ggctgctcaa gagagcgttc
    12481 aggctccgca ttattactgg tgccggcaga agaaatcgaa gaaatgttgg aggaaaaaca
    12541 aggcgtgatc gatatgcaat gtgaatgctg cgggacacaa tatttctttg acaaagcggc
    12601 gattgaaggc tttaaggaag aaactgaaaa attaagtaag ttagggttaa attaagctaa
    12661 acaagcggtc aagtttcttg tcttttttgc aatttgtaaa aaaacggtga aatttgaccg
    12721 cttgcatttt acttatttga gccttctggg tgtaacccaa tccctttgtg gcgttctttt
    12781 agtttagcat tgatctctgc ccacgagaga tcggcattgt gcaataacac cgttaagtga
    12841 tacatcagat cagccacttc accgaccaac tcttcccgat catttttcat tgccgcaatc
    12901 acgctttcta ctgcctcttc ccctactttt tggacgattt ttggcgtgcc tttggcgtaa
    12961 agtttagcgg tataagaact ttccggatca gcatttttac gttcggctat cattcgttct
    13021 aatttgctga aaaagatcca atctggttgt tcttgttcaa actgatgaaa acagctctcc
    13081 gcccccgtat ggcaggtttc gccgataggg ttagcgagga ttaacagggt gtcgttatca
    13141 caatccaaac tcatatccac cacgtttagg aaattgcccg aggtttcgcc tttcgtccac
    13201 agccgttgtt tagtacggga gtaaaaagtc actcgctttt cagccagcgt tttttcgagg
    13261 gcttgttggt tcatatatcc taacatcagt acttcgcagg tttgggcgtt ttggacgata
    13321 acgggcagta agccgtccac tttttgccag tctattttat tttgcatttt ttcttccttt
    13381 ttttgaccgc ttgtttagac atataggctt atttcaatca aattaccatc agggtcacgg
    13441 caataaaccg actcaatttt tcccactgcc cccgtacgag gcacaatccc accttccaaa
    13501 atctccacct gatgtcgctg taacacatag ataacctcct gaagtggagt taccgttaag
    13561 aggcataaat ctgccgtgcc acaatcggca ttttgggcat tgggtaggat ttctgcacct
    13621 ttttggtgga ggttgatttt ctgtgtgcca aacaaaagcg ctttgcgatt atcgccaaag
    13681 gtgatttctt gcatacccaa aatggtcgta taaaaatcaa tggttttttg catatcggca
    13741 acggttaaaa ccagatgatc taaggcagta atcttaatca tctacgcacc tcaacccctt
    13801 ccttcgccaa atattccttc aactccccaa tattgataat ttgtttatga aacacactcg
    13861 ctgccaacgc accatccaca tttgcctcaa taaaagcatc acggaaatgc accatttcgc
    13921 ctgcaccgcc tgaggcgatg agtgggactt ggcaaacttc acgcactttt ttcagttgca
    13981 ccaaatcgta gccgttgcgt acgccgtctt ggttcatcat attcagcacg atttcgcctg
    14041 ctcctcgctt ttgcacttcc tccacccaat ccaacaattg ccattcggtt tggcgggtgc
    14101 gtttttcatc gccggtatat tgattgaccc aatatttgcc ggtttctgcc tcgaaccagc
    14161 tatcaatacc aaccaccacc gcctgcacgc caaagcgctt tgccagttcg gtaatcagct
    14221 cggggttggc aagggctggg gaattgatgg agattttgtc cgctccgaaa gcgaaaatct
    14281 gctccgcatc ggcaatggtt ttgattccgc ctgccacaca gaacggaata tcaatcacct
    14341 gtgccacacg ttccacccag cttttatcca ccgttctgct gtcacttgag gcggtaatat
    14401 cgtaaaacac caactcatcc gccccctctt gggcataacg ctgggcgagt ggcacaatgt
    14461 cgccgatgat ttcgtggttg cggaactgca cgcctttcac aacttgcccg tcacgcacgt
    14521 ctaaacaagg aattatccgt tttgccaaca ttcgattgcc tccgctacat taaatttacc
    14581 ttccaacaac gcacgaccga caatcacgcc agccacgccc gtaccacaaa gcgctttgat
    14641 gtcggcaagc gagccgatac cgcctgagga ctgaaattga atctctgggt atttggcaca
    14701 gatttctcga tagagatcta catttgaacc tgccagcgtg ccgtctcggg aaatgtcggt
    14761 gcataaaacg tgttgcaagc ccacggtttg ataatcttca atcaactcct cgagcgacac
    14821 accacttgcc tcttgccagc cgctcatcgc aatgattttt tgaccgattg catcaatgtt
    14881 cacatccagt gccagcacaa atttctccgc accgtacttt ttgaaccagc ctttaaccat
    14941 ttcacgctct tttaccgcag tcgaaccaat caccacacgg tttgctccaa cagcaagtaa
    15001 atccgccaca tcctgctcgg tgcggatacc gccgcccact tgaattttgc agtgggtttc
    15061 acgaataatt ttgccgataa gtgcggtctg tctttgagcc ggatttttcg cccctgtaag
    15121 atcgaccaaa tgtaactgct ccgccccttg tgccaagtag tcggcaaatt gggcaatcgg
    15181 gtcatcggca taagtcgtct gtttcgcata atcgccctga tgtaggcgaa ctacttgccc
    15241 atcgataagg tcgagggcgg ggataatgat ggatttttgc atattattgt tcctgtgtgc
    15301 ctagcacgag ccgtgctagg ctgaataatc ccagtcgcgc tgcgactgcc tctctaagct
    15361 acggagtagc ttggtttatc tagccccata cggctcgtat ggggtacaag cggtcaaatt
    15421 cttccaaaaa cttgcaaaaa accgaccgca cttatttctt cacctgtttc gccacttgtt
    15481 caatcaccgc agcgaaatca atcgcatttt gttgcgtaat caccggtttg ccggtctctg
    15541 cctccaaact ttcccgagcc acttttgcaa catttccgcc ccgtttggca acggttttat
    15601 tttcttccaa gccctgtggg tggctgattt gagcgatgtc tttggtggca gcctcagcaa
    15661 gcatattcag caccaactcg gtggtcgtca tattgtctcg cagactttcc tttttcagcc
    15721 ctttgaaatc cttatattgg cgagtagtca taccgctcca cgcctgtgtg atttcattgg
    15781 tgagaatcgc aaattctctg cccacttgca caccgtgatc ttgccaagta tccgtcagtt
    15841 cttttcgcac ctgaatggct tgcaagcgtt ggttaatcca ctcacgggaa tatccctttt
    15901 tcaagtaagt agccaaagct cggtcaatgg tcaattcagg atcgataatc tcatcaatcc
    15961 gctctttgcc tacctctgcc agccacattt tcaacggctc ggctttcggg cttggcacag
    16021 actgaataat acggaaaatg ccttgtaaat ccgtggcatc ggtttcccgc atttttccgt
    16081 ctggggcttt taatttcaac tgtacgattt tttcgtacag ttcaattccg ccctcttcgt
    16141 ccttgatttt ccgctttaaa tcactccaat aacggcgtgg attgctactt tgcgtcagca
    16201 cctcgataat gtccaccacc gagaaaaacc actcttcttt ttcgctatcc cacaccgagc
    16261 ggatttggct gttttcaaat agtttaattt cgttcatttc tcaccttctt tcactggtta
    16321 aattaacagt aattttgtcg aaataaagcg agaaatcaag ccctattttc aaacttttcg
    16381 atcgagatca caaaatcaga cattctccac aaaattcctg agcaacttcg ccccagcctc
    16441 gcccgaacgc tcggggtgga actgtacgcc gtagaagttt tggctggcaa tggcagcgga
    16501 aaacggcacg ccgtagtcgc aggtggcgat ggtgttctca ttcggtagca caccgtagct
    16561 atgcacaaaa tagaaatgat tgccttgctc aatgtcgtga aatagcggat ggtcggcttg
    16621 gtattgcacc ttgttccagc ccatatgcgg caacggcaaa ccgcattcag gcaagcgttc
    16681 ggttttgcca ctcattaagt tcagtgttgc cacatcgcct tcgtgggaaa agtccgtcat
    16741 taactgcatt cctaagcaga tgccaagcat cggctgggtg gcgttgcgaa tggtgtcgat
    16801 aagtcggcga tcgtgcaaga tcgccatcgc cgccgctgct gttcccacac cggggagtag
    16861 caatttatcg gcagattgga ttttgttgag atctcgcgag atctcagccc gaatgccaag
    16921 acggtcaaaa gcaaatttga ccgaagacag gttggcacag cctgtgtcga tgatggtgag
    16981 gttggtcatt tagtttcctg agttaagtat ttcttatagt gaagtaaaat tgactcaata
    17041 tatctgtttc cttcaaaagc tttcttatcg aatct
//
LOCUS       DANLRW010000050        16784 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.050, whole genome shotgun sequence.
ACCESSION   DANLRW010000050 DANLRW010000000
VERSION     DANLRW010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16784
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.050"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            38..478
                     /gene="nudB"
                     /locus_tag="PXA71_001376"
     CDS             38..478
                     /gene="nudB"
                     /locus_tag="PXA71_001376"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HDL5105485.1"
                     /translation="MNYKNPHSILVVIYAKNTQRVLMLQRKDDPDFWQSVTGSINIGE
                     TPLEAAEREVSEETGLQTFEQKQPLVDCQKQIEFEIFPHFRYKYAPNITHCVEHWFLL
                     PLDSEQEPILTEHLAYRWVSVEDAVRLTKSPNNAQAIQEYLTSK"
     gene            491..1231
                     /locus_tag="PXA71_001377"
     CDS             491..1231
                     /locus_tag="PXA71_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5105486.1"
                     /translation="MAGHSKWANIKHRKAAQDAQRGKIFTKLIRELVTAAKLGGGDTS
                     SNPRLRAAVDKALSSNMTRDTINRAIERGVGGGDDTNMETKIYEGYGPGGTAVMVECL
                     SDNANRTISQVRPSFTKCGGNLGTEGSVGYLFSKKGLILVANADEDALTEAAIEAGAD
                     DIQPQEDGSFEIYTAWEDLGSVKDGIEAAGFKIENAEVTMIPSTTVELDAETAPKLLD
                     LINRLEDCDDVQNVYHNGEISDEVAALL"
     gene            1361..1888
                     /locus_tag="PXA71_001378"
     CDS             1361..1888
                     /locus_tag="PXA71_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105487.1"
                     /translation="MKLVKFVPALAATLVLAACSNANTQSAPQQAQDAVTKVAEQATQ
                     QVNEIAGNAPRASGAVKVEKATDGAKSIVYRCQSGKRVTANYVFQGEEAKAVNLLVQS
                     GGKTQKIPTLTRDASNQDSTSFKTDKYSWDLDTGFTLSSNGQSGMLTKYGAKTDTIVA
                     KLCDVDKALTSKLNK"
     gene            1955..2533
                     /gene="ruvC"
                     /locus_tag="PXA71_001379"
     CDS             1955..2533
                     /gene="ruvC"
                     /locus_tag="PXA71_001379"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HDL5105488.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQNGRQLEYLGSGAIRTTAEDLPTR
                     LKRIYAGVSEIITQFQPNMFAIEQVFMAKNPDSALKLGQARGTAIVAAVNHDLPVFEY
                     AARLVKQTVTGIGSADKVQVQDMVTRMLKLSAKPQADAADALAIAITHAHSIQHSLIV
                     AKQSQQNVSSEKEQILALMKTRYSRGRFRLKG"
     gene            complement(2599..3879)
                     /gene="murA"
                     /locus_tag="PXA71_001380"
     CDS             complement(2599..3879)
                     /gene="murA"
                     /locus_tag="PXA71_001380"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDL5105489.1"
                     /translation="MEKFRVYGPFSLNGTVDISGAKNAALPILFAAILAEKTVTLKNV
                     PDLKDVDTTFKILRQLGVTVEKGSDKGVVHIDASKINNYVAPYELVKTMRASIWALAP
                     LVARFQLGQVSLPGGCTIGARPVDMHISGLEKMGAKIELDEGYVKATSNGRLNGARIY
                     MDKVSVGATLSVMMAGTLAKGTTVIENAAREPEIVDTADFLNAMGAKISGAGTDMITI
                     EGVEHLGGCEHSVVPDRIETGTFLVAAAISGGRITCRNTKADTLDAVIEKLREAGMQV
                     DVTENTITLDSLGRRPKAVNIRTMPHPGFPTDMQAQFTLLNTVAEGTSRITETIFENR
                     FMHIPELIRMGAKAEIEGNIAICYGVEQLKSAEVMATDLRASISLVLAGCIATGETIV
                     DRIYHIDRGYEHIEEKLRQIGARIERFSAPFEGE"
     gene            complement(3989..4249)
                     /locus_tag="PXA71_001381"
     CDS             complement(3989..4249)
                     /locus_tag="PXA71_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL5105490.1"
                     /translation="MNPSQIEEILKQALSDATEVHAQGENAHFGVIVVSDSIASLSKV
                     KQQQAVYAPLAEYFTTNAIHALTIKVFSVEKWKTERLLNMVG"
     gene            complement(4282..4605)
                     /locus_tag="PXA71_001382"
     CDS             complement(4282..4605)
                     /locus_tag="PXA71_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HDL5105491.1"
                     /translation="MPQKTLQWDIQQNNESLFVKLSGELTRNTLLPLWKQRASFLSPT
                     GKQSLYWDLKEITRIDSAGFTLLAELLNHYHKIIPNSLINTPDSVRTLAALYDLDGWF
                     EQFII"
     gene            complement(4617..5252)
                     /gene="mlaC"
                     /locus_tag="PXA71_001383"
     CDS             complement(4617..5252)
                     /gene="mlaC"
                     /locus_tag="PXA71_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HDL5105492.1"
                     /translation="MLKNIKKIIVTGLVAVSALFSTTAFAETSPYVLMQQTADKLFGD
                     IKANQAKIKSNPEYLRTIVRNDLMPHVHVKYAGQLVLGKNLSAATDAQKEAFFNAFGQ
                     FVEQSYAQVLTQYQDQSVQIESPKSVDGKSIVSIRVNVSGKGAAQPIKLDFKWRKNSK
                     TGEWQAYDMAAEGVSMVATKQNEWAGVIRQKGIDALIAQVAQSAKQPITLK"
     gene            complement(5298..5822)
                     /gene="mlaD"
                     /locus_tag="PXA71_001384"
     CDS             complement(5298..5822)
                     /gene="mlaD"
                     /locus_tag="PXA71_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HDL5105493.1"
                     /translation="MRQSIKYEFWVGLFVLLGLAALVFLGLRVANVQGFSNEKTYTLY
                     ATFDNIGGLKVRAPIKVGGVVVGRVADISLDNKTYTPKVALAVNESFNQIPDTSSLSI
                     KTSGLLGEQYVALNVGFVIEGETAMMKEGDTFVDTNSAMVLEDLIGQFLYGDKKSDKT
                     EDEKASDSAEPKAE"
     gene            complement(5843..6619)
                     /gene="mlaE"
                     /locus_tag="PXA71_001385"
     CDS             complement(5843..6619)
                     /gene="mlaE"
                     /locus_tag="PXA71_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HDL5105494.1"
                     /translation="MVNFISSIGAVVINFIRTLGRSAFMLWGALIGKPEFRKHTPLLI
                     KQLYVLGVQSLLIIMLSGLFIGMVLGLQGYVVLVDFAAESSLGTLVSLSLLRELGPVV
                     TALLFAGRAGSALTAEIGLMKATEQLSSLEMMAVDPLRRIIAPRFWAGVISMPVLAAI
                     FTAIGIWGGSLVGVDWKGVDGGSFWSVMQNSVNTSDLINGFIKSVIFAFAVVWIALFN
                     GYDCVPTSEGISQATTRTVVNASLVILGLDFILTAIMFGG"
     gene            complement(6612..7415)
                     /gene="mlaF"
                     /locus_tag="PXA71_001386"
     CDS             complement(6612..7415)
                     /gene="mlaF"
                     /locus_tag="PXA71_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HDL5105495.1"
                     /translation="MTKTENLVEVKNLTFKRGERVIYDNLNLQVQKGKVTAIMGPSGI
                     GKTTLLRLIGGQILPESGEILFDGRDICKANNKELYEIRQRMGMLFQSGALFTDISTF
                     DNVAFPIREHTRLPEELIRKLVLLKLEAVGLRGAANLMPSELSGGMARRAALARAIAL
                     DPDLIMYDEPFTGQDPISMGVIVELIKELNQALNLTSIVVSHDVKEVLSIADYAYIVA
                     DKRVIAEGTPEILQASEDPQVVQFLAGKADGPVRFHYPAKDYTEELFNG"
     gene            7640..9034
                     /locus_tag="PXA71_001387"
     CDS             7640..9034
                     /locus_tag="PXA71_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Do family serine endopeptidase"
                     /protein_id="HDL5105496.1"
                     /translation="MNKTMKKSFLTAFILGSTIAAMPAYAEATLPTAVNGQAVPSLAP
                     MLEKVRPAVVSIAVEGKTKGDSRRSREIPEEFEFFFGPHADLFGNRSSAPRNFRGVGS
                     GAVINAEKGYVITNNHVIDNADKITVKLEDGREFKAKLVGADPLSDVALIQVEDPKNL
                     TEIKFADSDKLQVGDFTVAIGNPFGLGQTVTSGIISALGRSTGQSDEGYENYIQTDAA
                     VNQGNSGGPLINLNGELIGINTAIISPSGGNAGIAFAIPSNMANSLVTQIIEFGEVKR
                     GMLGIKGGELNADLAKEFNISTQQGAFVSEVLPDSAAAKAGFKAGDVITEINGQKIRS
                     FSELRAKVATSGVGKEIELTYLRDGKEAKAKVTLQSDSEAKVTASNLIPALKGADFNN
                     YNAKGIKGVEISNVEKGSIAEMRSLKKGDIIIGVNRHSVENIADLRKILETKPSVVAL
                     NIVRDGANFYVILQ"
     gene            complement(9086..9847)
                     /locus_tag="PXA71_001388"
     CDS             complement(9086..9847)
                     /locus_tag="PXA71_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HDL5105497.1"
                     /translation="MKTREQLSQENYQQAVKFAQHFADDVRQEFEREAEQRYQFERTQ
                     FEQSVLQNNAQNRPLAKIASLSCVAILLLAMTYYGLSGRYQVVQSGLQQHQDFQQQMS
                     DAHGTSKNERYILSLQNQLRENPNNGDLWYELGQAYALSNDFDSALVCYDNAEKLLGK
                     RAAILGAIATARYYDNGQKMTVEIQAIIEQALQLDKNENASLLLLASDSFLNNNFQQA
                     LDNWRKVLDSNNDSINRRAIIQSMEMARQMLNSQQ"
     gene            complement(9834..10286)
                     /gene="nrfF"
                     /locus_tag="PXA71_001389"
     CDS             complement(9834..10286)
                     /gene="nrfF"
                     /locus_tag="PXA71_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HDL5105498.1"
                     /translation="MRNSIISIGFLQKIRKILPLVFGLLLFVGTVQAEMVDTFQFQNE
                     ADRVRAISLARSLRCLQCQNQNLVESNATAAYNMRIEVYEMVNQGKSNEEIIRIMTER
                     FGSFVNYDPPFTPQTWVLWGLPVGLFSLLFLAILWRTRKNKGNKNENA"
     gene            complement(10276..10809)
                     /locus_tag="PXA71_001390"
     CDS             complement(10276..10809)
                     /locus_tag="PXA71_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HDL5105499.1"
                     /translation="MKKILLLIPLLLLVVIVGFLTVPLMNKDALAPTEDWQGKPFPEF
                     VGKNLLDSNAHLNNNSLPKEPYILNVWVSWCTWCIKEFPILLELKQKGVPIVGLTYSD
                     RPNDALNALKNWGNPFSLIIDDYEKGFLIQTLKVSSAPSSYLIDKHGVVRYQQKGYNP
                     DFAQDFLPKLEALRNEK"
     gene            complement(10806..12710)
                     /gene="nrfE"
                     /locus_tag="PXA71_001391"
     CDS             complement(10806..12710)
                     /gene="nrfE"
                     /locus_tag="PXA71_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfE"
                     /protein_id="HDL5105500.1"
                     /translation="MLPELGYFSLLLAAISAIFQVGFALLGEVRKQYHWLALAPLFTY
                     LQAAFTTFSFSTLAYAFLTDDFSVIYVAAHSNSQLPDFFKFAATWGGHEGSMLFWLTA
                     LVIWSAVFCKFSQKIDRLFANRTLAMLGLIALGFLLFILLVSSPFERGFPPPPEGRDL
                     NPMLQDIGLIFHPPLLYLGYVGFAVSFAMIVAALVSGGMDAAIMRWLRPWTMISWGFL
                     TAGIILGAWWAYYELGWGGWWFWDPVENASLMPWLLGTALVHSLIVSQQRGIFYYWTI
                     LLAIFAFALSLLGTFIVRSGVLTSVHAFAVDPDRGMALLILFFGLSFIALALFAFRAN
                     LWQGKVRFNLLSKETAFLLINGLFSVAASVVLLGTFYPMIFTVMNWGSISVGAPYFNS
                     VFTPLALLLMIVMGFAVVLGWKQISNKQILVKLWLLPIAVGLALGLIYASISQREHFA
                     LQPLPTIFISLAIWIILTHLPYSQKMWQIRPLAMRLAHIGFAVCVIGAMMNSYYGDEI
                     GVRLKPNQAAELAGYTFKYEDYHDLIGPNYTAEQAVFSISRDEQLLATVTPERRYYDV
                     RTMTMAEVGLFHHNLDDIYIVMGDKFGNLEYAFRLHYKPYVQALWLGGMMMVMAALLA
                     LFGYRRENKK"
     gene            complement(12980..13927)
                     /gene="nrfD"
                     /locus_tag="PXA71_001392"
     CDS             complement(12980..13927)
                     /gene="nrfD"
                     /locus_tag="PXA71_001392"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HDL5105501.1"
                     /translation="MNEYVPFQTPNLVWDGTIAIYLFLLGISSGAVQLAIAYRNSGVK
                     MEKPSQNWIIRSAAILGTLPTIIGLLLLIFHLTKPWTFWKLMFNYNFTSVMSMGVMLF
                     QLYMAVLVVWIAIMFKDWIVRYLPVVSGLIDFAEAKLLKPIEFILFVLAAVLGAYTGF
                     LLSALVSYPMLNNPVLPALFLASGASSGIAATFLVILLAGKLSGESHEVHFMHKFEVP
                     IMVTELGLIVAFFVGLHFGGADKSLALTHALNGFWGNVFWIGVMLIGIAIPLVANIFG
                     SHRLKHNVKFIILISVFDLIGVLCLRYFILYAGQLTVAS"
     gene            complement(13927..14604)
                     /gene="nrfC"
                     /locus_tag="PXA71_001393"
     CDS             complement(13927..14604)
                     /gene="nrfC"
                     /locus_tag="PXA71_001393"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HDL5105502.1"
                     /translation="MTCTRRDFVSGAGAIAVVASTGLATSITLATEKEQKKIRYAMVH
                     DETACIGCTACMDACRTTNKVPEGVSRLEIIRSEPFGEFPNVQYEFFRQSCQHCTNAP
                     CVSVCPTGASFIDPETGIIDVHSDLCVGCQYCIAVCPYRVRFIHPEKKSADKCNFCRD
                     TNLAEGKQPACVEACPTKALTFGDMNDPSSDIFHKVKNNPVYRTKTALGTEPNLYHIP
                     FGKGEHR"
     gene            complement(14604..15260)
                     /gene="nrfB"
                     /locus_tag="PXA71_001394"
     CDS             complement(14604..15260)
                     /gene="nrfB"
                     /locus_tag="PXA71_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HDL5105503.1"
                     /translation="MKKLISKAGRAVALIQAVVFAGFFAISSANALMPEQPKPLWQSE
                     TADDAKVAQDARRDPNKYCTQCHESANATGKPFHHAGKHFQKDVKSPNNGEPLTCISC
                     HGNISESHRKGAKDVMRFNPHGKASNPSLERSVNEQNQVCFACHTAEKLREKFWAHDT
                     HATKIACTNCHEIHPEKDPMKDIPEKDRIKLCTDCHTKIHSGEFKNPEMKATEAKGTK
                     "
     gene            complement(15279..16781)
                     /gene="nrfA"
                     /locus_tag="PXA71_001395"
     CDS             complement(15279..16781)
                     /gene="nrfA"
                     /locus_tag="PXA71_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HDL5105504.1"
                     /translation="MKFLIKSLAVATISILGCLQTALAEEAKTESLTDKAVKHEKLGV
                     KIESANHLFAEKYPLQYDSWKSTAKSTDRGSALEADPRYVILWAGYAFAKDYNKPRGH
                     FYAVTDVRDILRTGAPKDENDGPQPMACWTCKGPDVPRLIEEKGERGYFDPKWAKYGA
                     EIVNSIGCADCHDTTSEEFKQGKPALRVARPHVLRALNTVGWKFEDLDKHGKRPAVCA
                     NCHVEYYFKNKTDVTFPWDKGVDVDSIEKYYDEINFTDWTHALSKAPMLKTQHPDFEV
                     WSQGTHGKNGVTCIDCHMPKVKDKDGKVYTDHKIGNPFDQFEATCKTCHEQSKETLEK
                     RVKEYKHEVKEAMIRLEDQLVKAHFEAKAAWEAGATQEEMKEILMAIRHAQWRWDYSA
                     AGHGNHFHAPDVMLRTIATGIDRAADARAKLGVVLAKHGVTTPVAIPDISTKEKAQLA
                     IGLDIPKEQAAKDEFLKTVVPQWEKEARAKGLLPAEEADKPVAAPKAEAK"
BASE COUNT         5019 a         3724 c         3327 g         4714 t
ORIGIN      
        1 tacctaaaaa aattaaattt cacatcttag taataaaatg aactataaaa atcctcatag
       61 tatccttgtg gtgatttatg ctaaaaatac ccaacgagta ttgatgctac aacgcaagga
      121 cgatcctgat ttttggcaat cggtgaccgg ttcgatcaat attggagaaa caccgctgga
      181 agcagcagaa cgggaagtga gcgaagaaac cggtttgcaa acttttgagc aaaaacaacc
      241 gcttgttgat tgccaaaagc agatagaatt tgaaattttc ccgcattttc ggtataaata
      301 cgcacctaat atcacacatt gtgtcgaaca ttggtttttg ctgccacttg atagtgagca
      361 agagcctatt ttaaccgaac atttggcata tcgttgggtt tcagtggaag atgcggttcg
      421 actgactaaa tctcccaaca atgcccaagc aatacaagaa tatttaacat caaaataagg
      481 aaacaacaga atggcaggcc atagtaagtg ggcaaatatt aaacaccgta aagcggcaca
      541 agatgcacaa cgcggtaaaa tttttactaa attaattcgt gaattggtga ctgccgccaa
      601 actcggcggt ggtgatacct cttccaaccc tcgtttgcgt gcggcggtgg ataaagcgtt
      661 atccagcaat atgacccgtg ataccatcaa ccgtgcaatc gagcgtggtg taggcggtgg
      721 cgatgatacc aatatggaaa ccaaaatcta cgaaggttac ggcccgggtg gtacagcagt
      781 gatggtggaa tgtttaagtg ataacgctaa ccgtacgatt tcccaagttc gtccaagttt
      841 cacaaaatgt ggcggtaacc taggtactga gggttcggta ggttatttat ttagcaaaaa
      901 aggcttaatt ttagtggcaa atgccgatga agatgcctta actgaagctg ctattgaggc
      961 cggtgcggac gatattcaac cacaagaaga tggtagcttt gaaatttata ccgcttggga
     1021 agatttaggc tcagtgaaag acggcattga ggctgcaggc tttaaaattg agaatgcaga
     1081 agtaacaatg attccatcaa ctaccgttga acttgacgca gaaactgcac caaaacttct
     1141 tgatttaatc aaccgccttg aagattgtga tgatgtacaa aacgtttatc acaatggtga
     1201 aatcagtgac gaagtcgctg cattactgta ataaaaaaat cacgcaaaat aagcataatt
     1261 taggttatgc ttatttttta tgaacttttt tcctatatta ctgactaacc taatgtagtt
     1321 tatatgctac tactttacta taacatttta aggagagtct atgaaattag tgaaatttgt
     1381 ccctgcccta gcagcaactt tagtattagc cgcttgctct aatgcaaaca cacaatctgc
     1441 tcctcagcaa gctcaggacg ctgtgactaa agtggctgaa caagcaacac agcaagtgaa
     1501 tgaaattgca ggtaatgcac ctcgtgcaag tggtgcagta aaagtagaaa aagcaactga
     1561 tggtgcaaaa tcaattgtat atcgttgcca aagtggtaaa cgtgtaactg cgaattatgt
     1621 cttccaagga gaagaggcaa aagcagtaaa tctattagtc caaagcggcg gtaaaacaca
     1681 aaagatccca acattaactc gtgatgcctc aaaccaagat tctacttcat tcaaaacgga
     1741 taaatattct tgggatttag acacaggctt taccttatca tctaatggcc agtcaggtat
     1801 gctaaccaag tatggtgcta aaacagatac catcgttgct aaattatgtg atgtagataa
     1861 agcattaacc tcaaaattaa ataaataatc tttcttgatt ttactactca taagcgagaa
     1921 gataatatct tctcgcttat tttattgcac aaagatggct attattttag gaattgaccc
     1981 cggctcaagg gtaacaggtt acggtgtgat tcgccaaaac gggcgacagc tggaatattt
     2041 aggaagtggg gctattcgaa ccacggctga agatctgcct acccgcttaa aacggattta
     2101 tgcaggcgtg agtgaaatca tcactcaatt tcaaccaaat atgttcgcca tagagcaggt
     2161 atttatggca aaaaaccctg attctgcctt aaagctcggg caggctcgag gaacagcgat
     2221 tgtagcagcg gttaatcacg atttacctgt gtttgaatat gccgcccgat tagtcaaaca
     2281 aaccgttacg ggaattggtt ctgctgataa agtacaagtg caagatatgg taacccgtat
     2341 gcttaaactc tccgccaaac cacaagccga tgcggctgat gcattagcca ttgcgattac
     2401 ccacgctcat tcaatccaac attcactgat tgttgctaag caaagccagc agaatgtgag
     2461 tagtgagaaa gagcaaattt tagcactaat gaaaacccgt tatagccggg gaaggtttag
     2521 gttaaaaggc taactcaata taaaatgacc gcttggaact aatgtttcaa gcggtcattt
     2581 tttgagaaaa ttttacaatt actcgccttc aaaaggagct gagaaacgtt caattctcgc
     2641 cccaatctga cgtaattttt cttcgatgtg ttcatagcca cggtctatgt ggtaaattct
     2701 atccacaatc gtttcacccg ttgcaataca gcctgccaac actaagctga tggaagcacg
     2761 caagtcagtt gccattactt ctgctgattt taactgctct acaccatagc aaattgcaat
     2821 attaccttca atttccgctt tggcacccat acgaatcagc tcaggaatat gcataaaacg
     2881 gttttcaaaa atcgtttctg taatacggct tgtgccttct gcaactgtat ttaataaggt
     2941 aaattgagct tgcatatcag ttgggaaacc tgggtgtggc atagtgcgaa tgttcactgc
     3001 tttcgggcga cgacctagag aatcaagcgt gatagtattt tccgtcacat caacctgcat
     3061 tccagcttca cgtaattttt cgatcactgc atcaagagtg tctgctttgg tgttacggca
     3121 agtaattcga ccaccggaaa tagccgctgc cactaaaaat gtaccggttt caatacgatc
     3181 cggcactacg ctgtgttcgc aaccgcctaa atgctcaacc ccttcaatgg taatcatatc
     3241 ggtacctgca ccagaaattt tagctcccat cgcatttaag aaatcggcag tatctacaat
     3301 ttcaggctca cgagcagcat tttcaataac agtagtacct tttgctagag tacctgccat
     3361 catcaccgat aaagttgctc ctacgctcac tttatccata tagattcttg caccgtttaa
     3421 acgaccgttt gaagttgctt tgacatagcc ttcatcaagc tcgattttcg cccccatttt
     3481 ttcaagaccg gaaatgtgca tatctaccgg tcttgccccg atagtacaac cgcccggtaa
     3541 agaaacttgc ccaagttgga accgggcaac taatggagct aacgcccaaa ttgaagcacg
     3601 cattgttttc actaattcgt aaggtgcaac gtaattattg atcttactcg catcaatatg
     3661 taccacgcct ttatcgctac ctttttcaac cgttacccct aattggcgta agattttaaa
     3721 agtggtgtcc acatctttta aatcaggcac attttttaac gtaactgttt tttcagccaa
     3781 aatagcggca aataaaatag ggagtgcggc atttttcgca cctgaaatat cgacagtacc
     3841 atttaaagaa aatggaccat acacacgaaa tttttccatt tgggagatcc taaaaaataa
     3901 taatttgtag gggcgaaaaa tttttcgccc aattttccaa cgtttacaaa agagtttggg
     3961 cgaatagtga ttcgccccta catttcatct atccaaccat atttagcaaa cgctcagttt
     4021 tccatttttc cacgctgaat actttaatgg ttaaagcgtg aatcgcatta gtagtgaaat
     4081 actcagctaa aggggcataa acagcttgct gttgttttac ttttgaaaga gaagcaatgc
     4141 tgtcacttac tacaataacg ccaaagtggg cattctcgcc ttgagcgtgg acttctgttg
     4201 catcagataa tgcttgtttt aaaatttctt caatttgtga tggattcatt ctgacttcct
     4261 aaaatatgat tggtaactca ctcaaataat aaattgctca aaccaaccgt ctaaatcgta
     4321 taatgcagcc aaagttctga cagaatctgg cgtattaatc aaactgtttg gtatgatttt
     4381 atggtaatga ttcagtaatt cagcaagtaa ggtaaaaccg gcagaatcaa tccgagtgat
     4441 ttcttttaaa tcccaatata ggctttgttt ccctgttgga gataaaaaag aagcacgttg
     4501 cttccataaa gggagcaacg tgttacgagt taattcgcct gatagtttca caaaaagact
     4561 ttcgttattt tgctgaatgt cccattgtaa tgttttttga ggcataacta aactacttat
     4621 tttaaagtga taggctgttt tgcagattgt gccacttgtg caattaaggc atcaatccct
     4681 ttttgacgaa tcacacccgc ccattcgttt tgcttggttg caaccatact tactccttca
     4741 gcggccatat cgtatgcttg ccattcacct gttttgctgt ttttacgcca tttaaaatct
     4801 aatttgatcg gctgtgcagc acctttacct gacacgttta cacgaatgct tacgatagat
     4861 ttaccatcca ccgatttcgg gctttcaatt tgcacacttt gatcttgata ctgggttaac
     4921 acctgagcat aagactgctc aacaaattga ccaaaagcat taaagaatgc ctctttttgt
     4981 gcatcagtcg cagccgataa gtttttccct aacactaatt ggcctgcata tttcacgtga
     5041 acgtgtggca ttaaatcgtt acgcacaatg gtacgcaaat attcagggtt tgatttaatt
     5101 ttcgcttgat ttgctttaat atcgccaaat aatttatctg cggtttgttg cattaataca
     5161 taagggctag tttcagcaaa tgcggtggtt gaaaataatg cagaaactgc cactaagcct
     5221 gttacgataa tttttttaat gttttttaac attattgatg ctctccaaaa ctctaaatta
     5281 gaggttgttg tacttaatta ctctgctttt ggttcagcag aatcacttgc tttttcatct
     5341 tcagttttat ctgacttttt atcaccatat aagaactgac cgattaaatc ttctaacacc
     5401 attgcagaat tggtatctac aaaagtatca ccttctttca tcattgcagt ttcaccttcg
     5461 attacgaagc caacatttaa cgcaacgtat tgctcgccta ataagcctga ggttttaatt
     5521 gagagcgagc tggtatcggg aatttgatta aaactttcat ttaccgctaa tgccactttc
     5581 ggggtgtagg ttttgttatc aagtgaaata tcagccactc ggccaactac cacaccgcca
     5641 actttaatag gcgcacgaac ctttagtcca ccaatattat caaaagttgc atacagggtg
     5701 taagttttct catttgagaa gccctgcaca tttgctactc ttaagcctaa aaagacaaga
     5761 gctgcaagcc caagtagtac aaataagcct acccaaaatt catatttaat tgattgacgc
     5821 attgtctgtt cctttcaaaa aatcaaccgc cgaacattat cgcagttaaa ataaaatcca
     5881 atcctaaaat caccagtgaa gcatttacca ccgttcttgt ggtcgcttgg ctgattcctt
     5941 ctgaagtcgg tacgcaatcg tagccgttaa ataaggcaat ccagaccacc gcaaaggcaa
     6001 aaatcacact tttaataaag ccgttaatta aatcgctggt atttaccgag ttttgcatta
     6061 ccgaccaaaa actgccacca tcaacgcctt tccaatctac cccgactaat gagccgcccc
     6121 aaattccgat agcggtaaaa atagcagcta acaccggcat tgaaatcacg cctgcccaaa
     6181 agcgaggagc gatgatacgt ctaagcggat caaccgccat catttcaaga ctggaaagtt
     6241 gctctgtggc tttcatcagc ccgatttctg cggtcaatgc cgaaccggct cgccctgcaa
     6301 ataataatgc agtaactaca ggaccaagtt ctcgtaaaag cgagagtgaa accaaagttc
     6361 ccaagctact ttcggcggca aaatcgacca ataccacata gccttgtaag cctaacacca
     6421 ttccgataaa taagcccgac agcataataa ttaagagcga ttgcactcct aacacataaa
     6481 gctgtttaat cagtaacggg gtatgttttc taaattcagg tttaccgatt aatgctcccc
     6541 ataacataaa agcggaacgc cctaatgtac ggataaaatt aatcaccacc gccccgatag
     6601 agctaataaa attaaccatt aaatagctcc tccgtataat cttttgctgg ataatggaac
     6661 cgcaccggac catcagcttt accggctaag aattgtacca cttgcggatc ttcgcttgcc
     6721 tgtaaaattt ccggtgtacc ttcagcaatc actcgtttat ctgccacaat ataagcataa
     6781 tcggcaatac ttaatacttc tttcacatcg tgagacacca caatggaggt caaattcaat
     6841 gcctgattta actctttaat cagctcgaca atcacaccca tactaatcgg atcttgcccg
     6901 gtaaacggct catcatacat aatcagatcc ggatctaacg caatcgctcg agcaagggcg
     6961 gcacgtcttg ccataccgcc ggaaagttcg gacggcatta aatttgccgc acctcgcaac
     7021 ccaaccgcct cgagcttcaa taacaccaat ttgcgaatta gctcttcggg taaacgggta
     7081 tgctcccgaa tcgggaaagc cacattatcg aaggtagaaa tatcggtaaa taacgccccc
     7141 gattgaaaca acatccccat tcgttggcga atttcataca actctttgtt attggctttg
     7201 caaatatctc tgccatcaaa taaaatttcg cccgattcag gtaaaatctg cccaccgatt
     7261 agcctcaaca gggtggtttt accaatccca gaaggcccca taatggcagt cactttacct
     7321 ttctgcactt gcagattcag gttatcgtaa atcactcgct cccctcgctt gaaggtcaag
     7381 ttttttactt caaccaaatt ttccgttttt gtcatcaaat aggactcaaa ttaataaaag
     7441 tgatatttat ggtctatcaa atttgccaga atgtcaaaaa acttttaata atctgacaaa
     7501 aatctgcctt tacaagcggt cagatttgct aaattttttg caaaccggct gaactgaaaa
     7561 agaaaggtct tgtcttagcc aatacgagcg ttttcactcg tagattataa aaacatagga
     7621 tatgaggaac attcacaata tgaacaaaac aatgaaaaaa tcatttttaa ctgcattcat
     7681 tttaggctca accattgccg caatgccggc gtatgcagaa gcaacattac ccacagccgt
     7741 aaatgggcaa gctgtgccaa gccttgcacc aatgctggaa aaagttcgcc cggcggtggt
     7801 gagtattgca gtagaaggta aaaccaaagg cgatagccgc cgcagtcgtg aaattccgga
     7861 agaatttgaa tttttcttcg gtcctcacgc cgatttattc ggcaaccgct catcagctcc
     7921 acgcaatttc cgtggcgttg gatcaggtgc agtcatcaat gccgaaaaag gttatgtgat
     7981 taccaataac cacgtgatcg acaatgccga taaaattacc gtaaaacttg aagacggacg
     8041 tgaatttaaa gctaaattag ttggtgctga tcccctttca gatgtggcgt taattcaagt
     8101 tgaagatcca aaaaacttaa ctgaaattaa attcgccgat tccgataaat tacaagtggg
     8161 cgattttaca gttgcaatcg gtaacccgtt tggcttagga caaactgtta cttcaggcat
     8221 catctcggca cttggtcgtt caaccggtca atccgatgaa ggctatgaaa actatattca
     8281 aaccgatgcg gcagttaacc aaggtaactc tggcggcccg ttaattaact taaacggcga
     8341 attaatcgga attaacaccg ctattatttc tccaagtggt ggcaatgccg gtatcgcctt
     8401 tgcgattcca agtaatatgg caaacagctt ggtgactcaa attattgagt ttggtgaagt
     8461 aaaacgtgga atgttaggca ttaaaggcgg tgaattgaat gctgaccttg ctaaagagtt
     8521 caatatttcc acccaacaag gggcatttgt aagcgaagtc ttaccggatt ctgctgctgc
     8581 taaagccggc tttaaagcag gtgatgtgat tactgaaatc aacggtcaaa aaatccgtag
     8641 tttcagcgaa ttacgagcaa aagtagctac ttcaggtgta ggtaaagaga ttgaacttac
     8701 ttacctgcgt gacggcaaag aagccaaagc aaaagtgacc ttacaatcgg attctgaagc
     8761 caaagttact gcttcaaacc tcattccggc attaaaaggg gcagatttta acaactacaa
     8821 tgccaaaggc attaaagggg ttgaaatttc taacgtagaa aaaggctcga ttgctgaaat
     8881 gcgaagcctc aaaaaaggcg atattatcat cggcgtgaac cgccactcgg tagaaaacat
     8941 tgccgattta cgcaaaatat tagaaaccaa gccatctgtg gttgcactca atattgtgcg
     9001 tgacggtgca aatttctatg tgattttgca ataaaccttt tgatccactc aaacaaaagc
     9061 cgatgacaaa aatcatcggc ttttgttatt gctgggaatt taacatctgt cgtgccattt
     9121 ccatactttg gataatcgct ctgcggttga tagaatcatt attgctatct aacactttac
     9181 gccaattatc gagagcttgt tgaaaattgt tatttaaaaa gctgtcggag gctagcagga
     9241 gtaaactggc attttcattt ttatccaact gtagggcttg ctcgataatg gcttgaattt
     9301 caacggtcat tttctgcccg ttatcgtaat aacgagcggt ggcaatcgcc cccaaaatag
     9361 ccgctcgttt tccgagtagc ttctcggcat tatcgtagca aaccagtgcc gaatcaaaat
     9421 cattgcttaa cgcataagcc tgccctagtt cgtaccataa atcaccgtta ttcgggtttt
     9481 ctcgaagctg gttttgcaga ctcaaaatat agcgttcatt tttcgatgtg ccgtgtgcat
     9541 cgctcatctg ttgttgaaaa tcttgatgtt gttgcaaacc tgattgcacc acttgataac
     9601 gtccggaaag cccatagtaa gtcattgcta acaacaaaat cgccacgcaa ctcaggcttg
     9661 cgattttagc aagcggtcga ttttgagcat tattttgcaa aacgctctgt tcaaattgcg
     9721 ttcgttcaaa ttggtaacgt tgctctgcct cacgctcaaa ctcttgtctg acgtcatctg
     9781 caaaatgttg ggcaaattta accgcttgtt ggtagttttc ttggcttaat tgctcacgcg
     9841 ttttcatttt tgttgccttt atttttgcga gttcgccaca aaatagctag aaataacagg
     9901 ctaaacaagc caaccggcaa gccccataat acccatgtct gtggcgtgaa tggtggatcg
     9961 taattcacaa aactgccgaa acgctcggtc ataatgcgga taatttcctc attacttttc
    10021 ccttgattca ccatttcata cacttcaatt cgcatattgt aagccgccgt cgcattggat
    10081 tcgaccaaat tttggttctg acattgcaaa catcgcaacg aacgagccag tgaaatcgcc
    10141 cgtacccgat ccgcctcatt ttgaaattga aaggtgtcca ccatttcagc ttgaaccgtg
    10201 ccgacaaata gcaacaagcc aaatacaagc ggtaatattt tgcggatttt ttgcaaaaag
    10261 ccgatggaaa ttatgctatt tctcatttct gagagcctct aatttgggta ggaaatcctg
    10321 tgcaaaatca gggttgtaac ccttttgttg gtaacgcact acaccgtgtt tatcaatcaa
    10381 ataactggaa ggtgcagaag agactttcag ggtttggatc aaaaagcctt tttcgtaatc
    10441 atcaataatt aaactaaacg gatttcccca gtttttcaat gcgttgaggg catcatttgg
    10501 gcggtcgcta taagttaagc cgacaatcgg cacgcctttt tgttttagtt ccaacaaaat
    10561 cgggaactct ttaatgcacc aagtacacca gctcacccac acattgagaa tataaggctc
    10621 tttcggcaag ctgttgttat ttaaatgcgc gttactatca agtaagttct tgcctacaaa
    10681 ctctggaaac ggcttgccct gccaatcttc agtgggagca agggcatctt tattcattaa
    10741 cggcacagtc aaaaagccaa caataactac aagtaacagg agcggaataa gtaacaggat
    10801 ttttttcatt ttttgttttc tctacgataa ccgaataatg ccaacagggc ggccattacc
    10861 atcatcatac cacctaacca taaggcttgc acataaggct tatagtgcaa acggaaggca
    10921 tattctaaat tgccgaactt atcccccatc acaatataaa tatcgtctaa attgtggtgg
    10981 aaaagcccta cttctgccat tgtcatcgtt cttacatcat aatagcgtct ttccggtgtg
    11041 acggttgcca gcaactgttc atctcggctg atagaaaaaa cggcttgctc ggcggtgtag
    11101 ttcggaccga tgagatcgtg ataatcttca tatttaaagg tataaccggc aagttccgct
    11161 gcttgattcg gctttaaccg cacgccgatt tcatcgccgt aataactgtt catcattgcc
    11221 ccaatcacgc aaaccgcaaa gccgatatgg gctaaccgca tcgcaagcgg tcgaatttgc
    11281 cacatttttt gcgaataggg caaatgagtg agaataatcc agatcgcaag gctgataaat
    11341 atggtgggta acggctgcaa agcaaaatgc tctctttgcg agatggaggc ataaatcaac
    11401 cctaacgcta aaccgactgc aatcggcagc aaccaaagtt ttaccaatat ctgcttattt
    11461 gaaatctgtt tccagcccag caccaccgca aagcccatta ctatcattaa cagtaacgct
    11521 agtggcgtga atacgctatt gaaatagggg gcccccactg aaatcgatcc ccaattcatc
    11581 actgtgaaga tcatcgggta gaaagtcccc agcaatacca cagaagcagc cacactaaat
    11641 aagccgttaa tcaataaaaa tgccgtttct ttagaaagta agttgaaacg cactttgcct
    11701 tgccagagat tcgctcggaa tgcaaacaga gcaagggcaa tgaaacttaa gccgaagaat
    11761 aagatcagca gtgccattcc tctgtcggga tcgaccgcaa aggcatgaac cgaggtcagt
    11821 acacccgaac gaacaataaa cgtgcctaat aggcttaaag caaaggcgaa aatggcaagt
    11881 agaatcgtcc aataatagaa aatgccacgc tgttggctca caattaaact atgcaccaat
    11941 gcggtgccaa gtagccaagg cattagggag gcattttcca ccggatccca aaaccaccag
    12001 ccaccccagc cgagttcgta atatgcccac cacgccccta aaataatgcc ggcggtgaga
    12061 aatccccacg aaatcatcgt ccacggacga agccaacgca taatcgcagc gtccattccg
    12121 cctgaaacga gggcggcgac aatcattgca aagctcaccg caaagccgac atagcccaag
    12181 tagagcaaag gcgggtgaaa gatgagccca atatcttgca acattgggtt gagatctcgc
    12241 ccttcaggtg gtggtggaaa gccacgttca aatgggctgg aaaccaatag aatgaaaagt
    12301 agaaaaccta gtgcaattag ccctaacatc gctaaggttc ggttggcaaa caagcggtca
    12361 attttttgcg aaaatttgca aaataccgca gaccaaatca caagagcggt gagccaaaac
    12421 agcattgagc cttcgtgtcc gccccaagtg gcggcaaatt taaaaaaatc ggggagctgg
    12481 ctgttggaat gagcggcaac gtagataacc gaaaaatcat cggttagaaa agcataagct
    12541 aaggtagaaa aggaaaatgt ggtaaaagca gcttgcaaat aagtgaaaag cggagccaat
    12601 gccagccaat gatattgctt gcgaacttcg cctagaagtg caaaaccaac ttgaaaaatg
    12661 gcactaattg cagccaataa aagtgaaaaa tagccgagtt ccggtagcat aaaaaatcca
    12721 aaaaatgacc gcttgtgaat gtaaaaaaag ccctctccac ttgtgggaga gggacagatt
    12781 tttcttcgtt cagaagaaaa atcagggaga ggggaattaa ataattttgc taaaaataac
    12841 aatactccct ctctctgaaa aatatttctg aacgaaatat ttttcggtct caatactcgc
    12901 tacgctcgct ccttcggagc cgttggcaaa gccaacgttc aaatgtaaac atttgtccca
    12961 caaggggaga gagtatatcc taacttgcaa ccgttagttg ccctgcataa aggataaagt
    13021 aacgcaagca gagtacaccg attaagtcga aaacggaaat taagataata aatttcacgt
    13081 tatgtttcaa gcggtggcta ccaaaaatat tggcaacaag cggaatcgca ataccgatta
    13141 acattacgcc tatccagaac acattccccc agaagccgtt aagtgcatgg gttaaagcga
    13201 gcgatttatc tgctccaccg aagtgtaagc ccacaaagaa cgctacaatt aagcctaatt
    13261 cggttaccat aatcggcact tcaaatttgt gcataaagtg gacttcgtgg ctttcaccgg
    13321 ataacttgcc tgcgagtaaa atcactagga aagttgctgc aatacctgac gatgcccctg
    13381 atgccaagaa caatgccggt aacacagggt tattcagcat tggataactc actaacgccg
    13441 agagtaagaa accggtgtaa gcaccaagta cagcagccaa tacgaataag ataaattcaa
    13501 ttggttttaa cagcttcgct tcggcaaaat cgatcaaacc agagaccaca ggtagatacc
    13561 gaacaatcca atctttaaac attatggcga tccaaaccac caatactgcc atataaagtt
    13621 ggaataacat tacccccatc gacattactg aggtaaagtt atagttgaac attaatttcc
    13681 agaatgtcca aggtttggtt aagtggaaaa tcagtaacag taagccgata atggttggta
    13741 atgtgccaag aatagccgca ctacgaataa tccagttttg gcttggtttt tccattttga
    13801 caccgctatt acggtaagca atcgctaact gaaccgcacc tgatgaaata ccaagtagga
    13861 ataagtaaat agcgatagtg ccatcccaaa caaggtttgg ggtttggaaa ggtacatatt
    13921 cattcattat ctatgttctc ctttaccaaa tggaatgtga tataaattcg gctccgtgcc
    13981 taatgccgtt ttggtgcgat aaaccggatt atttttcact ttatggaaaa tatcgctact
    14041 tggatcattc atatcaccaa aggttaaagc tttagtcgga caagcctcta cacaagcagg
    14101 ctgtttgcct tctgcaagat tggtatctcg gcaaaagtta catttatccg ccgatttttt
    14161 ctcagggtga ataaaacgta cacgatacgg gcaaaccgca atacagtatt ggcaaccgac
    14221 acacaaatct gagtgtacat caataatccc ggtttcagga tcgataaatg aagcaccggt
    14281 cgggcaaaca ctcacacaag gtgcattggt acagtgttgg caagattggc ggaaaaactc
    14341 atattgtacg ttcggaaact caccgaaagg ctcactacgg ataatttcta aacgagaaac
    14401 cccttccggc actttgttgg tggtgcgaca agcgtccata caagccgtac agccgataca
    14461 ggcagtttca tcatgaacca tcgcatagcg gattttcttt tgttctttct cagtagcaag
    14521 agttatggag gtggcaagcc ctgtacttgc cacaactgcg atagcacctg cccctgagac
    14581 gaaatctcta cgggtgcaag tcattatttt gttccttttg cttctgtggc tttcatttca
    14641 ggatttttaa attcgcctga atgaattttg gtatgacaat ccgtacaaag tttaatgcga
    14701 tctttttcag gaatgtcttt catcggatct ttttccgggt gaatttcatg acagttggta
    14761 caagcaattt tagttgcgtg cgtgtcgtga gcccagaatt tttcacgcaa tttctctgcc
    14821 gtatggcaag caaaacagac ttgattttgc tcatttaccg aacgttcaag tgatgggtta
    14881 cttgctttac cgtgtgggtt aaaacgcatt acgtcttttg cccctttgcg gtggctttca
    14941 gaaatattac cgtggcaact tatacaagtg agtggctctc cattattcgg gcttttcaca
    15001 tctttttgga aatgtttgcc tgcgtgatgg aaaggcttac ctgttgcgtt tgccgattcg
    15061 tgacattgag tacaatattt atttggatca cggcgtgcat cttgagctac ttttgcatca
    15121 tcagccgttt ctgattgcca aagaggtttt ggctgctcag gcattaacgc attcgcactg
    15181 gaaattgcaa aaaaacctgc aaatacgacc gcttgtatga gggcgactgc tcgtcctgct
    15241 tttgagatta attttttcat agttcacctc aagctacatt attttgcttc tgcttttggt
    15301 gctgctaccg gtttgtctgc ttcttctgcg ggtaataaac ctttagcacg agcttctttt
    15361 tcccattgag gaaccacagt ttttaagaac tcatcttttg ctgcttgctc tttaggaata
    15421 tctaaaccaa tagcaagttg tgctttctct ttagttgaga tgtccggaat cgccactggc
    15481 gttgttacac cgtgtttcgc taacactaca cctaatttag cacgggcatc tgctgcacgg
    15541 tcgatacctg ttgcgatggt acgtaacatt acatcaggtg cgtggaagtg gttaccgtga
    15601 cctgccgcag agtaatccca acgccattga gcgtgacgaa ttgccattaa gatctctttc
    15661 atctcttctt gagttgctcc agcttcccaa gcagctttcg cttcaaagtg agctttcact
    15721 aattgatctt ctaagcgaat cattgcctct tttacttcgt gtttatactc ttttacacgt
    15781 ttttccaatg tttctttgct ttgttcatga caagttttac aagtcgcttc aaattggtca
    15841 aacggattac cgattttgtg gtcagtataa actttgccgt ctttgtcttt cacttttggc
    15901 atatggcaat caatacaggt tacaccattt ttcccatgtg taccttgtga ccaaacttca
    15961 aaatctgggt gctgcgtttt tagcatcgga gctttcgata aagcatgagt ccagtctgta
    16021 aaattgattt catcgtagta tttttcaatg ctatctacat ctacaccttt atcccaaggg
    16081 aaagttacat ctgttttatt tttgaaatag tactccacat ggcagttagc gcacacagca
    16141 gggcgtttac catgtttatc taaatcctca aacttccaac caaccgtatt caatgcacgt
    16201 aatacgtgag gacgtgcaac acgtagtgca ggtttacctt gtttaaactc ttctgatgtc
    16261 gtgtcatggc agtctgcaca acctattgag tttacaattt cagcaccata tttcgcccat
    16321 ttaggatcaa aatatcctcg ctcacctttc tcctcaatta agcgtggaac atcagggcct
    16381 ttacatgtcc aacaagccat aggttgtgga ccatcatttt catctttagg cgcgccggtg
    16441 cgcaaaatat cacgcacatc ggtaactgca taaaagtgac ctcgtggttt attataatct
    16501 ttcgcaaaag catagcctgc ccacaaaata acataacgag ggtcagcctc taacgcactt
    16561 cctcgatctg tggattttgc agttgacttc caagaatcgt attgtagcgg atatttttct
    16621 gcaaataggt ggtttgcaga ctcaattttc acgcctaatt tttcatgctt aactgcttta
    16681 tctgttaatg attcagtttt cgcctcttca gctaaagcag tttgtaaaca ccccaatatt
    16741 gaaattgttg ccacagctag gctttttatt aaaaatttca tttt
//
LOCUS       DANLRW010000051        16585 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.051, whole genome shotgun sequence.
ACCESSION   DANLRW010000051 DANLRW010000000
VERSION     DANLRW010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16585
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.051"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(168..683)
                     /locus_tag="PXA71_001396"
     CDS             complement(168..683)
                     /locus_tag="PXA71_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5105505.1"
                     /translation="MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNT
                     GARREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQG
                     DVLQMLGSRQGNDMGGQQGGWGNSAPAGNSYNQGNSNYGYNQTQSAAPQSKPAPQPEP
                     AMNNFDDDIPF"
     gene            838..3666
                     /gene="uvrA"
                     /locus_tag="PXA71_001397"
     CDS             838..3666
                     /gene="uvrA"
                     /locus_tag="PXA71_001397"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDL5105506.1"
                     /translation="MQHIDIRGARTHNLKNINLTLPRDKFIVITGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRLMLLAPVVKERKG
                     EHVKLLENLTASGYLRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRADLATRLA
                     ESFETALDLSGSTAIIADMDDPNAEEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGA
                     CPTCDGLGVEQFFDAKKVVQNEEVSLAAGAIKGWDRRSFYYFGLLKAVAEHYGFDLET
                     PFGQLPKKYQNIILNGTKEEIEFVYVNDRGDKVKRKHAFEGVLNNMARRYKETESNSV
                     REELAKYINNRPCMDCEGSRLRREARYVFLDKTNLPMVSEKSIGEALTFFEELKLAGQ
                     KEKIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVM
                     YVLDEPSIGLHQRDNERLLNTLVHLRNLGNTVIVVEHDEDAIRAADHIVDIGPGAGVH
                     GGQVIAQGTAAEIMQIEESITGQFLSGKQKIEIPAQRVPYEPTKLLTLSGASGNNLKK
                     VKLEIPVGLFTCITGVSGSGKSTLVNDTLFPLAQNALNRAENSDVAPYESIDGLSHFD
                     KVIDIDQSPIGRTPRSNPATYTGLFTPIREIFAGTQEARARGYNVGRFSFNVRGGRCE
                     ACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREF
                     FAPMPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILD
                     EPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEI
                     IATGTPEEVAKDKRSHTARFLKEILAKG"
     gene            complement(3758..5491)
                     /gene="dauA"
                     /locus_tag="PXA71_001398"
     CDS             complement(3758..5491)
                     /gene="dauA"
                     /locus_tag="PXA71_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HDL5105507.1"
                     /translation="MLNKWFLTKNAFLAVKPFSALKDALNAGYGKQHLIRDIISGLTV
                     GVIAIPLSMALAIASGVPPQHGLYTAIVAGIVIALTGGSRFNISGPTAAFVVILYPVT
                     QQFGLSGLLMATMLSGGILVLMALLRLGRLIEYIPLPVTLGFTCGIGIVIATLQIKDF
                     LGLSIEKMPEHYLGKLEAIFSALPTINWADTLVGVVTLLVLTRWHKLRLPIPGHLPAV
                     FIGTLLSLLLIHFGQNVATIGSAFHYTLSDGTTGYGIPSVLPEFVLPWNLPNAEGNRI
                     DWNLTTIQALLPAAFSMAMLGAIESLLCAVVCDNMTDTKHHSNNELLAQGLGNIASPF
                     LGGITATAAIARSAANVRSGAVSPISSVVHALLVLFALLFLAKALSYLPLSSMAALLL
                     VVAWNMADIPQIIQLTRRSGKNEIAVLLTCITLTVLFDMVIAITVGVLLASLLFIRTI
                     AEMTKSFEMAHPTDLNDVLVYRISGPLFFAAADNLFADLHNKTVHTDHQIKHIVLQCD
                     AVTVLDAGGIHALTRFVQHMLPHQQLHLCNVQFQPMRMLVRSQKTVNEIPQIQFSSDL
                     ESAFDKIRQAN"
     gene            5733..6665
                     /locus_tag="PXA71_001399"
     CDS             5733..6665
                     /locus_tag="PXA71_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5105508.1"
                     /translation="MDSLIHFLSAFLTNITWIGALELGLIYSLVALGVLISYKILDFP
                     DLTADGSFPLGGAVCVISILNQVDPWLATLYGTLAGAVAGMVTASLHIGFKIEKLLAS
                     ILMMIALYSINLRIMGMPNIAILGETTIYDVMPIESDLQLALVRLVMALLVVIIVKGL
                     FDLFFATEIGLAVRATGTNSRMAKAQGIAINKMTILGMAISNALIALGGALYVQSNGG
                     VDISIGVGTIVIGLAAVIIGEAIFSVKRIIWLTFAVIIGSILYRFFIALALNNETLNG
                     IGFGPQDLNLITALLVVIVLAVPRIKHKLLGKRG"
     gene            6667..7464
                     /locus_tag="PXA71_001400"
     CDS             6667..7464
                     /locus_tag="PXA71_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5105509.1"
                     /translation="MIELNNLFITFNKGTAIENPVLRGLSLKVEQGEFVSVIGSNGAG
                     KSTLLNAISGDCAVDSGEILIQGNKVNQSTTWQRANQVARVFQDPMAGTCESLTIEEN
                     MALAYQRGRKRGLGFAIKRQMRELFKDKLALLGLGLENRLTDQMGRLSGGQRQAVSLL
                     MASLQPSNILLLDEHTAALDPKTTDFVLELTNKIVREQKLTTLMVTHSMRQALDYGDR
                     TVMLHQGQVAFDVSGEQRQKMDVPDLLQLFQQSRHEQLSDDGLLLGN"
     gene            7551..7772
                     /locus_tag="PXA71_001401"
     CDS             7551..7772
                     /locus_tag="PXA71_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105510.1"
                     /translation="MLSIFKTPVEKETLDDWAKISVDVAKVAILAIPVILFGKEPTLI
                     KLTNLALLVLSIYVFLTLGRKLRQLKEVL"
     gene            7955..9880
                     /locus_tag="PXA71_001402"
     CDS             7955..9880
                     /locus_tag="PXA71_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HDL5105511.1"
                     /translation="MTKYDDKIQHAFSENGLLSQNISGFRPRQAQLEMAQVVAKAVKF
                     ATPVVVEAGTGTGKTFAYLVPALLSGKKTILSTGSKNLQDQLFNRDLPTIQKALKYKG
                     KIALLKGRANYLCLERLDQVTAMGVLGDKSVLTDLKKVSKWQNATKTGDLSECITIAE
                     DSPILPQLVSTTESCLGSDCPHFKDCYVVQARRKAMEADVVVVNHHLFCADMAVKKTG
                     FGELIPEAELVIFDEAHQLPDIASQYFGQSLSSRQLFDICKDTNIVYRTELKDLSQLG
                     KAADHLTKVVQDFRLLMGGEGQIRGNLRELFRDKKVVDGLVKVAENIDFLSEVAKKSL
                     GRSETLDKIFERLAEVKVQLKKLMDTSVTGYCYWYEANGRSFGLHITPLMVADKFGEQ
                     LKNQQIGWVFTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYQHQSLLCVPRYLPD
                     TNKSNTLTALGQLLKPVIEANKGRCFLLCTSYYMMRGLADFLREHSSLNVLLQGETSK
                     SRLLEKFVKEDHSVLVATQSFWEGIDVRGDDLSLVIIDKLPFTSPDEPLLKARMEDCK
                     IQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGQTFLKSLPP
                     SRRTRDLGNVIQFLKQK"
     gene            9954..10319
                     /locus_tag="PXA71_001403"
     CDS             9954..10319
                     /locus_tag="PXA71_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HDL5105512.1"
                     /translation="MLSTLLRMVASLALLFVMLYLGKLIVYLFPIGIPDSILGMLILF
                     GCLVIGIVKVEWVIPSAKPLTRYITLFFLPICVELIEHLELLRQNLNTFVLATALSTL
                     VSVVAIGVFAQWIFHYKRG"
     gene            10321..11007
                     /locus_tag="PXA71_001404"
     CDS             10321..11007
                     /locus_tag="PXA71_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HDL5105513.1"
                     /translation="MSYLYTVLTVIMFIAGLKISQKLKSSFLNPFLIALALLIGVLLI
                     FNIPYQDYYQGNSPLNNLLGVSVVALAYPFYEQLPHIRKKWRQIVVILLFSTIITMIT
                     GLGFSLLFGASQEILAAILPKSVSMPMAIIITNEINGNVAIAAVGVMIAGLVGSILGF
                     TLLRLAKVRNVMVIGLSMGAASHALGTARCLEHSMKAGSYSSIALVACGVLSSIFAPL
                     IFNVIVTLCY"
     gene            11091..12854
                     /gene="msbA"
                     /locus_tag="PXA71_001405"
     CDS             11091..12854
                     /gene="msbA"
                     /locus_tag="PXA71_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HDL5105514.1"
                     /translation="MQEQITQEKDLSTLKTFKRLWPTISPFKAGLITGAVALVLNALV
                     DSSLIYLLKPLLDEGFGQANNDFLKLMAVLVVVFILVRGITNYIASYCLAWVSGKVVM
                     TLRRHIFQHLMYMPVSYFDNNPTGRLLSRVTYDTEMVASSASHSLVTIVREGAYLLSL
                     FVVMIYTSWQLSIVLFVMAPIIGVLISFVSKYFRQLSRNIQSSMGELTVTTEQMLKGH
                     KVVLSFGGQEIEKARFDRVSNDMRRKGMKVVSADGISDGVVQLIASFALSAVLYVATF
                     PEVMSENLTAGSFTVVFSSMMAMLRPLKSLTNVNSQFQRGMAACQTLFEFLDLKTEKD
                     HGLISVAKAEGNVEFKKVSFSYEGKEEKALDNISFTIPKGKTVALVGRSGSGKSTIAN
                     LLTRFYDVTDGQILLDGINIQDYRLKNLREQCSVVSQQVHLFNDTIANNIAYAAIDKY
                     SREEIIAAAKAAHAMEFIEKLENGLDTVIGENGASLSGGQRQRLAIARALLRNSPVLV
                     LDEATSALDTESERAIQSALEVLQKDRTVLVIAHRLSTIEKADEILVVDHGNIIERGS
                     HTELLAQGGAYKQLHSLQFGA"
     gene            12943..13575
                     /gene="lolB"
                     /locus_tag="PXA71_001406"
     CDS             12943..13575
                     /gene="lolB"
                     /locus_tag="PXA71_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HDL5105515.1"
                     /translation="MKKLTKLLSLSALLVLTACNSVLNASTEVQQPTVQIPHDDPQWQ
                     QHLAKLSQIQGYTATGQFGYISPEERFSSHFNWRYTNPIQFGLELSSNLSTKSLKLER
                     NKRGLTVSDNEGNSRSDRDVDALMQEIIGVSFPIDQFAYWVKGLPEKDGNYIVNEKRQ
                     LSQFSYPLNGTLWKASYVEYHEDRVPNLPKLIVLENGTQTLKIRIEKWAY"
     gene            13563..14417
                     /gene="ispE"
                     /locus_tag="PXA71_001407"
     CDS             13563..14417
                     /gene="ispE"
                     /locus_tag="PXA71_001407"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDL5105516.1"
                     /translation="MGVLMKKVTLPSPAKLNLFLYITNKRADGYHELQTLFQFLDFGD
                     EIEIEITESSEVELINPVEGVATEENLIYRAAKLLQKTTACRQGCRIGIKKNLPMGGG
                     VGGGSSNAATVLVGLNHLWNTELSLEKLAELGLSLGADVPIFVRGMAAFAEGVGEVLT
                     PCDPQEKWYVVLKPEVSISTAAVFTDPNLPRNTPKRPLAELLSLPWENDCEKVVREKY
                     SAVEDLIQELLQYAQFRLTGTGACIFAEFETKAEAEQVFAHKPEAVFGFVAKGQNISP
                     LHQMLFQI"
     gene            14443..15393
                     /locus_tag="PXA71_001408"
     CDS             14443..15393
                     /locus_tag="PXA71_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HDL5105517.1"
                     /translation="MTDIKLFAGNATPELANRIAKHLYTSLGNATVGRFSDGEIQVQI
                     NENVRGGDIFIVQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVIADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLIDDILKKS
                     DLVNPIVVSPDIGGVVRARAVAKLLNDTDMAIIDKRRPKANVSQVMHIIGDVADRDCI
                     LVDDMIDTGGTLVKAAEALKERGARRVFAYATHAVFSGTAAQNLANPALDEIVVTDTI
                     PLSNEIKALNKVRVLTLSGMLAEAIRRISNEESISAMFDA"
     gene            15471..16481
                     /gene="pyrD"
                     /locus_tag="PXA71_001409"
     CDS             15471..16481
                     /gene="pyrD"
                     /locus_tag="PXA71_001409"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HDL5105518.1"
                     /translation="MYSLIRKLLFALDTEKAHQFSIQALALAGKSPFSILPTPDNPTQ
                     VMGLTFKNPIGLAAGADKNGEAIDGFGKLGFGFIEVGTITPLAQDGNPKPRQFRIVDA
                     EGIINRNGFNNKGVDVLVENVKNATYSGILGINIGKNAVTPIEHSFDDYQICLRKVYQ
                     YADYVAVNISSPNTKNLRSLQYGEALDDLLRNLKNEQAQLSQKMGKYRPLVLKIAPDL
                     TDEEIVSVADSLIRYQIDGVIAGNTTLSRESIAGLPYSEQLGGLSGKPLHSLSTRLIS
                     KLSAELGERIPIIGCGGVHSLESGQEKVNAGASLLQVYSAMIYQGPSLIQTLAKHLQL
                     NS"
BASE COUNT         4778 a         3130 c         3835 g         4842 t
ORIGIN      
        1 cgaatgaaaa gtggatttat taattatatt aattaatagg gaacacttat tacttggaag
       61 tgttccctat tattttgagt aaggtagggg cgctttatat gagtagcttt ttatttcatc
      121 gaaatgcggt gtatggaacc catgagctac ttaagtcaat actttgatta gaacggaata
      181 tcatcatcaa aattgttcat tgccggctca ggctgtggtg ccggtttaga ttgcggtgca
      241 gcactttggg tttggttgta accataattg ctgttgcctt gattgtagct attacccgca
      301 ggagcagaat ttccccaacc gccttgctga ccgcccatat cattaccttg acggctgccg
      361 agcatttgta gcacatcgcc ttgaatttcg gtggtgtaac gatcttgccc gttttggtct
      421 tgccatttac gggtttttaa acgtccttct acgtaaactt gagagccttt acgtaaatat
      481 tgcccgcata cttctgcttg acggcggtag aatacaatac gatgccactc ggttacttca
      541 cggcgtgcac cggtgttttt atccgtccag ctttctgagg ttgccacact aatatttgca
      601 accgcttcgc catttggcat tgtacgcatt tcagggtcgt tacctaaatt accgacaata
      661 attactttat tgataccagc cataaaatcc tctgtttgat aaattaaact aaaatttgct
      721 aagtattcta cctgaaaatc caaaagatga acaccaaaaa actgatattt tgtacagttt
      781 tattaaaata tgcgataatg atcgaaaatt gagaaaatag cactggacat taaaaatatg
      841 caacatatcg atattcgtgg agcaagaaca cacaacttaa aaaacatcaa tttaaccttg
      901 ccgagagata aattcattgt aattaccggg ctttccggct cgggcaaatc gtctctggcg
      961 tttgatacgc tctatgcgga aggacaacgc cgttatgtag aatcactgtc tgcatacgcc
     1021 cgccagtttc tctccttaat ggaaaagcct gatgtggatc atattgaagg gctttcccct
     1081 gcgatttcga ttgagcaaaa atcaacctct cacaacccac gttcgaccgt aggaacggta
     1141 acggaaattc acgactattt acgtttattg tttgctcgag tgggcgagcc tcgttgccct
     1201 gaccacgatg tgccattggc tgctcaaact atttcgcaga tggtggatcg agtattggaa
     1261 gaaccggaag gaaaacggtt gatgctactt gcccctgtgg tgaaagagcg taaaggcgaa
     1321 cacgtaaaat tattggaaaa tttgaccgct agtggctatt tgcgggctag aattgacggt
     1381 gaaatttgcg atttatccga cccaccggca ttagaattac agaaaaaaca caccattgaa
     1441 gtggtggtgg atcgctttaa agtaagggct gatctagcca cccgtttggc ggaatctttt
     1501 gaaacagcgt tagatttatc cggctctacc gcaattattg cagatatgga cgacccaaat
     1561 gccgaagaaa ttgtgttttc gtccagcttt gcttgtccgc attgtggtta ctctttacac
     1621 gaattagaac cacgcctttt ctcgtttaac aacccggcag gtgcttgccc gacttgtgat
     1681 ggtttgggcg ttgagcagtt ttttgatgcc aaaaaagtag tgcaaaatga agaggtttca
     1741 ttagccgccg gtgcgatcaa aggctgggat cgccgcagtt tctactattt tggcttatta
     1801 aaagccgttg ccgagcatta tggctttgat ttagaaaccc cattcgggca gctaccgaaa
     1861 aaatatcaaa acattatttt aaacggcact aaagaagaga ttgagtttgt ttatgtcaat
     1921 gaccgaggcg ataaggtcaa acgtaaacac gcttttgaag gggtgctgaa taatatggct
     1981 cgccgctata aagaaaccga atcaaactcg gtgcgtgaag agttggcgaa gtatattaat
     2041 aatcgtcctt gtatggattg cgaaggctca cggttacgcc gtgaagcccg ttatgtattc
     2101 ttagataaaa ccaatttgcc gatggtttcg gaaaaaagta tcggcgaggc attaaccttt
     2161 tttgaagagc tgaaattagc cggtcagaaa gaaaaaattg ctgagaaaat cctcaaagaa
     2221 attcgtgaac ggctacagtt tttagtgaat gtcggcttga attatctttc tctttcccgc
     2281 tcggcagaaa ccctttcagg tggcgaggct cagcggattc gccttgccag ccaaattggt
     2341 gcgggtttag taggggtaat gtatgtgctg gatgagcctt ccatcggctt gcaccaacga
     2401 gacaatgaac gcctactgaa tactttggtg catttacgca atttaggcaa taccgtgatt
     2461 gtggttgaac acgatgaaga tgcgatccga gccgcagatc atatcgtgga tataggcccg
     2521 ggtgccggtg tacacggtgg gcaagttatc gcacaaggta cggcagctga aattatgcaa
     2581 attgaggaat ctattaccgg acaattcctc tcaggcaagc aaaaaattga gattccggct
     2641 cagcgtgtgc cttatgagcc aactaaattg ctcaccttat cgggagcaag tggtaacaac
     2701 ttgaaaaaag tgaaattaga gattccggtt ggtttattta cttgtatcac gggtgtatca
     2761 ggttcgggca aatcaacttt agttaatgac acactattcc ctctggcaca gaatgcgtta
     2821 aaccgagcgg aaaacagcga tgttgctcct tatgaatcga ttgacggctt atcgcatttt
     2881 gacaaggtaa ttgatattga ccaaagcccg attgggagaa ctcctcgctc aaatccggca
     2941 acttacaccg gattatttac gccaattcgt gagatttttg ccggcacgca agaagctcga
     3001 gccagagggt ataacgtagg gcggtttagc tttaatgtgc ggggcggacg ttgcgaagcc
     3061 tgtcaaggtg acggcgtgat taaagttgaa atgcacttct tgcctgatgt gtatgtgcct
     3121 tgcgatcact gtaaaggcaa acgctataac cgtgaaacct tggaaattcg ctataaaggc
     3181 aaaactattc accaagtgtt agagatgacg gtggaagagg cgagagaatt ttttgcccct
     3241 atgccgatga ttgcccgcaa gttgcaaacc ttgatggacg tggggttatc ttatatccgt
     3301 ttagggcaat cttctactac gctctcaggc ggtgaagccc aacgggtgaa attggcgacc
     3361 gagctttcca aacgagacac cggcaaaacg ctctatattt tagatgaacc gaccaccggc
     3421 ttgcattttg ccgatattaa acagttactc ggcgtgctac atcgcctgcg tgatcaaggc
     3481 aatacgattg tggtgatcga acataattta gatgtgatta aaaccgcaga ctggattgtc
     3541 gatcttggcc ctgaaggtgg cagtggcggc ggtgaaatta ttgctaccgg cacaccggaa
     3601 gaagtggcaa aagacaaacg ttctcacacc gcacgcttct taaaagagat tttggctaaa
     3661 ggctaacgtt caacacaagc ggtcatattt tcggaaaatg ttgcaatttg caaaaagttg
     3721 gaaaatatga ccgcttgttt tatatccgga gttattccta gttagcctgt ctgattttgt
     3781 cgaaggcaga ttcaagatcg ctactgaatt gaatttgcgg gatttcgttt accgtttttt
     3841 gtgagcggac tagcattctc atcggctgaa attgcacatt acagagatga agttgttgat
     3901 gtggcaacat atgctgtaca aagcgggtta gggcgtgaat gccaccagca tctaatactg
     3961 taacggcatc gcattgcagc acaatatgtt taatttggtg atcggtatgt acggttttat
     4021 tgtgcagatc ggcaaagaga ttatcggcgg cagcaaaaaa taacggaccg ctgatccgat
     4081 aaaccaacac atcgttcaaa tcggttgggt gagccatttc aaaggattta gtcatttctg
     4141 caatagtacg gataaatagc aggcttgcca gtaacacccc taccgtaatg gcaattacca
     4201 tatcaaataa taccgtgagg gtaatgcaag tcagtaaaac cgcaatttca tttttacctg
     4261 aacggcgggt aagttgaatg atttgtggaa tatctgccat attccaagct actaccaata
     4321 atagtgcagc cattgaggaa agaggcaaat aggaaagtgc tttagccaaa aagagtaggg
     4381 caaataaaac caacaaggcg tgaaccacac tagaaatggg ggaaactgcc ccggaacgaa
     4441 cattggcagc cgatctcgca atcgctgctg tggcggtaat tccccctaaa aatggcgagg
     4501 caatattacc taagccttgg gctaatagtt cgttgttaga gtggtgcttg gtatctgtca
     4561 tattatcgca cactaccgca cataataacg attcgatagc cccaagcatt gccattgaaa
     4621 aggcagccgg taataaggct tgaatggtgg ttaagttcca atctatccga ttcccctctg
     4681 cattcgggag attccaaggt aacacaaatt caggtaatac gcttgggata ccatacccag
     4741 tggtgccgtc agagagcgtg tagtggaatg ctgagccgat agtggcaacg ttttgtccga
     4801 aatgaatcag cagtaatgat aacagcgtgc cgataaagac ggcgggtaaa tgcccgggaa
     4861 taggcaaccg tagcttgtgc caacgagtta aaaccaacaa tgttacgaca cccactaagg
     4921 tgtcagccca atttatggtt ggcaatgctg aaaaaatagc ctctagcttg ccaagatagt
     4981 gttcaggcat tttttcaatg cttaagccca gaaaatcttt gatttgcaag gtggcgatca
     5041 caataccgat gccacaggta aaacccagtg tgacaggtag aggaatgtat tcaattaagc
     5101 gtcctaatcg gagtaacgcc atcaatacta aaattcctcc ggaaagcatt gttgccatga
     5161 gtaatccact taagccaaac tgctgcgtga cggggtatag aatcaccaca aaagcggctg
     5221 ttgggcctga aatattaaat cttgaaccgc ctgttagggc aatcacaatc ccggcaacaa
     5281 tcgccgtata taaaccgtgc tgtggtggca caccgctggc aatcgccaac gccatagata
     5341 acggaatagc aataacgcca acggttaagc ctgaaataat atctctgatt aaatgttgtt
     5401 taccataacc tgcattgaga gcatctttta atgcactaaa aggcttgacg gcaagaaaag
     5461 catttttagt taaaaaccat ttatttaaca tagaatgttc gagtgaagag aatgtttcgc
     5521 ttattttact gcaatgaata aaattaaatt tgagctaacg caagaaaaag caggaaagac
     5581 gaaatatgtt ggagacaagc ggttgtttta ggcgaaaaat ttgcaaatac aaataattag
     5641 ctgattttat tttgaaaata gcgtaaaatg ccactttaat ttgtactact atagtagtgc
     5701 atttgtgtga tttcattaac tataataaac aaatggacag tcttattcat tttttgagtg
     5761 cctttttaac taatatcact tggattgggg cgttagagct ggggttaatt tattcccttg
     5821 ttgcccttgg ggtattaatt tcttataaaa ttctggattt tccggatctg accgcagacg
     5881 gcagtttccc tttaggaggg gcggtgtgtg tgatcagcat tttgaatcaa gttgatcctt
     5941 ggctggcaac tttatacggc acgcttgccg gagcagtagc cggtatggtt actgcaagtt
     6001 tgcatatcgg ctttaaaatc gaaaaattgc ttgccagtat tttaatgatg atcgcactct
     6061 attcgattaa tctacgcatt atgggaatgc cgaatattgc tattttaggc gaaaccacga
     6121 tttacgatgt aatgccgatt gaaagcgatc tacagttagc cttagtacga ttagtgatgg
     6181 cattgctggt tgttattatc gtaaaaggtt tgtttgacct cttttttgcg accgaaatcg
     6241 gtttggctgt gcgggcaacc ggtactaata gtcgaatggc gaaagcacag ggtattgcga
     6301 ttaataaaat gacgatttta gggatggcga tttctaatgc gttaattgcc ttaggtggtg
     6361 ctttgtatgt gcaaagcaac ggtggtgtag atatttcgat tggggtagga actatcgtga
     6421 ttggcttggc ggcggtaatt atcggggaag caattttttc ggtaaaacgg attatttggc
     6481 ttacctttgc ggtgattatt ggctcaattc tttatcgttt cttcatcgca ctagcattaa
     6541 ataacgaaac tttaaacggc attggctttg gcccgcaaga tctgaattta attacggcgt
     6601 tattggtggt gattgtatta gcggttcctc gaattaaaca caaattgctc ggtaagcgag
     6661 gttaatatga ttgaactcaa taacttattt attaccttca acaaagggac agcaattgag
     6721 aaccctgtgc tgagaggctt atccctaaaa gttgagcaag gcgaatttgt gtcggtaatt
     6781 ggtagcaatg gggcgggtaa atctacctta ttaaatgcga tcagtggtga ttgtgcggtg
     6841 gactccggtg agattttaat tcaaggaaat aaggtaaacc aatccaccac ttggcaacgg
     6901 gcaaatcaag tcgcccgagt tttccaagac ccgatggctg gcacttgtga aagtttaacg
     6961 attgaagaaa atatggcact ggcttaccaa cgtggacgta aacgtgggtt gggctttgcg
     7021 atcaaacgcc aaatgcgaga gttattcaaa gacaaacttg ctttgttagg gctaggtttg
     7081 gaaaatcggc ttactgatca aatggggcgt ttatcaggcg ggcaacgcca agcggtgagc
     7141 ttgctgatgg catcacttca gccgtctaat atcttattgt tagatgaaca caccgcggca
     7201 ctggatccga aaaccaccga ttttgtgctt gaacttacca ataaaattgt aagagaacag
     7261 aaattaacca cgctaatggt aacgcattca atgcggcaag cccttgacta tggcgataga
     7321 accgtgatgt tacaccaagg gcaagtggcg tttgatgttt cgggcgagca acggcaaaaa
     7381 atggacgtgc cggatctgtt acaacttttc caacaaagtc gccacgagca gttgagtgac
     7441 gatggattat tactcggcaa ttaattttgc gatctgcatc gaaaaaatga atttctcctt
     7501 ttgtttttgg ctgtcaaatt ttaaataata agcccaaaag gaggtattca atgttaagca
     7561 ttttcaaaac accggtagag aaagaaacgc tagacgattg ggctaaaatt tcggttgatg
     7621 tagcgaaagt tgcgattttg gcaattcctg ttatactttt tggcaaagaa ccaacgttga
     7681 ttaaattgac taacttagca ttattggtat tgagtattta tgtttttttg acgcttgggc
     7741 gaaaattacg gcagctaaag gaggtgttgt gatggaacta ggctggaatt taaccatagg
     7801 tttgctaatt ttaaacgtct ttgcgtttgc ttggctttat attattaacc ggatttctaa
     7861 agaacaatta tccaaaaatc aataatattt aatttttcac aagcggttgt ttttgcaaaa
     7921 tattttgtaa attcgaccgc ttgcctgttt ttaaatgaca aaatacgacg ataaaattca
     7981 gcatgcattt agcgaaaatg ggttgctcag ccaaaatatc agtggatttc gaccacgcca
     8041 agcacagctt gaaatggctc aagtggtcgc aaaagcagta aaatttgcga cacctgttgt
     8101 ggtagaggcg ggaaccggca caggcaaaac ctttgcttat cttgtgccgg cactactttc
     8161 aggcaagaaa actattcttt cgacaggttc taaaaacctg caagatcaac tttttaatcg
     8221 agatcttccc actattcaaa aagccctgaa atacaaaggc aaaattgcgt tactcaaagg
     8281 gcgtgcgaac tatttgtgtt tagagcgttt agatcaagtg accgcaatgg gcgtacttgg
     8341 ggataaatcc gttcttaccg atttaaaaaa agtcagtaaa tggcaaaatg ccactaaaac
     8401 aggggattta agtgaatgta ttaccattgc cgaagatagc ccgattctac cgcagttagt
     8461 tagcaccacc gagagttgct taggctcgga ctgcccgcat tttaaagatt gttatgtggt
     8521 acaagcccgc cgtaaagcga tggaggcaga cgtagtggtg gtaaaccatc acctattctg
     8581 tgctgatatg gcagtaaaaa agaccggttt tggtgagttg atccctgaag ctgagctggt
     8641 gatctttgat gaagctcacc aactgccgga tattgccagc caatattttg ggcaatcgct
     8701 ttcttcccgc cagttatttg atatttgtaa ggataccaat attgtttacc gcactgaact
     8761 caaagatctg tctcaattag gcaaagcggc tgatcacttg acgaaagtag tgcaagattt
     8821 ccgattattg atgggcggag aagggcagat tcgaggcaat ttgcgagagt tatttcgtga
     8881 taaaaaagtg gtcgatggct tggtaaaagt ggctgaaaat attgattttt taagtgaagt
     8941 ggcgaaaaaa tcgctggggc ggtcggaaac gttggataaa attttcgagc ggttagcaga
     9001 agttaaggtt caacttaaaa aattaatgga tactagtgtg acaggctatt gttactggta
     9061 tgaggcgaat ggacgatcct ttgggctgca tattacgccg cttatggtgg cagataaatt
     9121 tggtgaacag ttgaagaacc agcaaattgg ttgggtgttt acctcagcca cactcgaagt
     9181 tgggggcaaa ttcgatcatt tttgtcaacg gctgggcatc gaaaatgcgg agcagttggt
     9241 gttacaaagt ccgtttgatt accaacatca atctttactc tgtgtgcccc gctacttgcc
     9301 ggataccaat aaatccaata ctttaactgc tctcgggcaa ttattaaaac cggtgattga
     9361 ggcgaataaa gggcgttgtt tcttgctttg tacttcctat tatatgatgc gaggtttagc
     9421 cgacttttta cgcgaacaca gttcgctgaa tgtgttattg caaggcgaaa ccagcaaaag
     9481 ccgtttattg gaaaaatttg tgaaagaaga tcacagcgtg ttggtggcga cccaaagttt
     9541 ttgggagggg attgatgtgc gaggcgatga tttatcgttg gtgattattg ataaattgcc
     9601 gttcacttca ccggacgaac cattactcaa agcccgaatg gaagattgta agatacaggg
     9661 cggtgatccg tttaacgata ttcaaattcc cgaagcggtg attaccctca aacaaggtgt
     9721 agggcgttta attcgtgatg tgaccgatag aggtgtagtg attatttgtg attcccgttt
     9781 ggtgatgcga aattatgggc aaactttctt gaaaagttta ccgccgtcta gacgcactag
     9841 agatttgggg aatgttattc aatttttgaa acaaaaatag ggttacaagc ggtcagattt
     9901 ctgcagattt ttgcaaaaaa acggataaaa ataaccgctt gttgaggagt tatatgttgt
     9961 ctacattgct gcgtatggtt gcttctttgg cattgttatt tgtgatgctt tatttaggca
    10021 agttaatcgt ttatctattc cccatcggga tcccggatag tattttaggt atgcttatct
    10081 tattcggctg cttggttatc ggcattgtta aagtggaatg ggtgataccg agcgcgaaac
    10141 cgctcacacg ttatataaca ctatttttcc ttccgatttg tgtcgaactc atcgaacatc
    10201 ttgagctgtt acgccaaaat ctgaacactt ttgtattagc aacggcatta agcaccttag
    10261 tttctgtggt cgcgattggc gtgtttgcac agtggatttt tcattacaag agagggtaaa
    10321 atgagctatc tttacactgt gttgacggta atcatgttta ttgccggttt gaaaatcagc
    10381 caaaaactca agagcagttt tctgaaccct ttcttaattg cactcgcttt gctaattggt
    10441 gtattactga tttttaatat cccttaccaa gactattatc aaggtaattc ccccttgaat
    10501 aacttacttg gcgtttctgt tgtggcactt gcttaccctt tttatgaaca attaccccat
    10561 atccgtaaaa aatggcgaca gattgtcgtg attttgctgt ttagtaccat cattacgatg
    10621 ataaccgggc ttgggttttc attattattt ggggcaagcc aagagatctt agccgccatt
    10681 ttgcctaaat cggtatcaat gccaatggca attattatta cgaatgaaat taatggaaat
    10741 gttgcaatcg cagcggttgg ggtgatgatc gcaggcttag tgggatctat tttaggcttt
    10801 acgcttctgc gcctggcaaa agtaagaaat gtgatggtga ttgggttaag tatgggagct
    10861 gcttcccacg cattaggcac ggcaagatgc ttagagcata gtatgaaagc cggtagctat
    10921 agttctatcg cattagtggc ttgtggtgtg ctgtcttcta tatttgcacc tttaatattt
    10981 aacgttatcg tcacgttatg ttactaaaaa cagtgaaatc tcaaacctta tttggtaact
    11041 ggctgaaatc aaggtacaat accgtgattt ttcaatgaaa atagagaatt atgcaagaac
    11101 aaataacaca agaaaaagat ctttctacgc ttaaaacctt taagcgttta tggccgacta
    11161 tcagcccgtt taaagcgggt ctgattacag gtgctgtcgc tttagtatta aatgcgttag
    11221 tggattctag tcttatctat ctcctcaaac ccttgctaga tgaaggcttt gggcaagcta
    11281 ataatgattt tctgaaattg atggcggtgc ttgtagtagt ttttatttta gtgcgcggta
    11341 ttaccaatta tattgccagt tactgtttag cttgggtgtc aggcaaggtg gtaatgacat
    11401 tacgccgcca tatttttcaa catttaatgt atatgccggt aagctatttt gataacaacc
    11461 cgaccgggcg tttgctctca cgagtgactt acgataccga aatggtggcg agttctgctt
    11521 ctcattcttt agtgactatt gtgcgtgaag gggcttatct gctgtcattg tttgtggtga
    11581 tgatctatac cagttggcag ctttctattg tgttatttgt gatggctcct atcattgggg
    11641 tactgatcag tttcgtttca aaatattttc gtcaattaag tcgcaatatc caaagttcaa
    11701 tgggggagct tactgtcacg acagaacaaa tgcttaaagg gcataaggtt gtactttcct
    11761 ttggtgggca ggaaattgag aaagcacgtt ttgatcgagt cagtaatgat atgcgtcgta
    11821 aagggatgaa agtcgtttct gctgatggca tttctgatgg tgtggtacag cttatcgcct
    11881 cttttgcgtt atctgctgtg ctttatgttg cgaccttccc cgaggtgatg agtgagaatt
    11941 taaccgcagg ttcattcaca gtagtgtttt cttcgatgat ggcaatgtta cgtcctctaa
    12001 aatcactcac caatgtgaac tcgcaattcc aacgtggaat ggcagcctgc caaacgttat
    12061 ttgaattttt agatttaaaa actgaaaaag atcacggctt aatctccgtt gctaaagctg
    12121 aaggcaatgt ggaatttaaa aaggtaagct ttagttatga aggtaaagag gaaaaagcac
    12181 tcgataatat ttctttcacc attcctaaag gcaaaacagt agcattggtt gggcgttccg
    12241 gctcgggtaa atcaactatt gccaatttgc ttacccgttt ttatgatgtg actgacggtc
    12301 aaattttgct tgatggaatt aatattcaag attaccgctt aaaaaactta agagaacaat
    12361 gctcggtggt ttctcaacaa gttcatttgt ttaacgatac tattgctaat aatattgctt
    12421 atgctgcaat cgacaaatac agccgagaag aaattattgc tgctgcaaaa gctgcacacg
    12481 caatggaatt tatcgaaaaa ttggaaaatg gcttagacac tgtaattggt gaaaatggcg
    12541 caagtctttc cggtgggcaa cgccaacgct tggcaatcgc tcgtgcatta ctgcgaaatt
    12601 ctcctgtgct tgtgctggat gaagctacct ctgcattaga tacggagtca gaaagagcga
    12661 tccaatctgc acttgaagtg ctacagaaag atcgtacggt gttggtcata gcacaccggt
    12721 tatcaacgat tgaaaaagcc gatgaaattt tggtagtcga tcacggaaat attattgagc
    12781 gtggcagcca tacggaattg ttagcacaag gtggggctta taaacaactc catagtttac
    12841 aattcggagc ctaatttgta ggggagaaat atgtttctcc ccaattaatg ataaaaacag
    12901 ggcgaaaaat atttcgtccc tacaataatt tatttggata ctatgaaaaa actgacaaaa
    12961 cttttatctc ttagtgcttt actggtctta accgcctgta attcggtact aaatgcctca
    13021 acagaggtgc aacaaccaac agtacaaatt ccgcatgacg atccacaatg gcagcagcat
    13081 ttagcgaaac tgagccaaat tcaaggctat actgcaacgg ggcaatttgg ctatatttcg
    13141 cctgaagagc gtttttcttc ccatttcaac tggcgttata ctaatccaat ccaatttggg
    13201 ttagagcttt cctcgaatct ctcgactaaa tcactgaaat tagagcgtaa taaacgaggc
    13261 ttaacggttt cggacaatga gggtaatagc cgttctgacc gtgatgttga tgcgttaatg
    13321 caagagatta tcggtgtttc gtttcctatc gatcagtttg cctattgggt aaaaggcttg
    13381 cctgaaaaag atggcaacta tattgtgaat gaaaaacgcc agctgtcgca atttagttat
    13441 ccgcttaatg gcacgctttg gaaagcaagc tatgtggagt atcacgaaga tcgtgtacca
    13501 aacttaccga agctgattgt gcttgaaaac ggcactcaaa cgttgaagat ccgcattgaa
    13561 aaatgggcgt attaatgaag aaagtcacct tacccagccc ggcaaaatta aacctgtttt
    13621 tatacattac caataagcgg gcagacggtt atcacgagct acaaacgctg tttcagtttt
    13681 tagattttgg tgatgaaatt gagattgaga tcacagaaag ttcagaggtt gaattaatta
    13741 atccggtaga aggggtggca actgaggaga atctcattta ccgagcagca aaacttttgc
    13801 aaaaaacgac cgcttgtagg caaggctgcc gtattgggat taaaaaaaac ctaccgatgg
    13861 gcggaggtgt tggtggtgga tcttctaatg ctgcaacagt attagtcggt ttaaatcact
    13921 tgtggaatac cgagctttca ttggaaaaat tggcagaatt aggcttaagt ttaggggctg
    13981 atgtgccgat atttgttaga ggtatggctg cttttgccga aggcgtgggg gaggtgttaa
    14041 ctccttgtga tccacaagaa aaatggtatg tagtgctaaa accagaagtg tcgatttcaa
    14101 ccgcagcggt gtttaccgac ccgaatttac ctagaaatac gccaaaacgc cccttagccg
    14161 aattattatc tttaccgtgg gaaaacgatt gcgaaaaagt tgtacgagaa aagtattctg
    14221 cggttgaaga tcttatacaa gaattgttac aatatgctca gtttaggcta acaggcacag
    14281 gtgcttgtat tttcgccgaa tttgaaacaa aagcagaagc cgagcaggtt tttgcacata
    14341 aaccggaagc cgtcttcggt tttgtggcga aagggcaaaa tatttcgcca ttacatcaaa
    14401 tgttattcca aatctaacca tcttaacctt aaggatcaat ccatgacaga tattaaactg
    14461 tttgcgggca acgcaactcc ggaacttgct aatcgtattg caaaacatct ttatacctca
    14521 ttaggtaatg caacagttgg tcgttttagc gatggtgaaa ttcaagtaca aatcaatgaa
    14581 aatgtgcgtg gaggcgatat ttttattgtg caatccactt gtgcaccaac taatgataat
    14641 ttaatggaat tgatcgtgat ggtagatgcg cttcgccgtg catcagctgg tcgtattacc
    14701 gcagtgattc cgtatttcgg ttatgcacgc caagacagac gcgtgcgttc ggcccgtgtg
    14761 ccaattaccg caaaagtgat tgctgatttc ttatccagcg taggggtaga tagagtctta
    14821 acctgcgact tacacgcaga gcaaattcaa ggtttctttg atgtgccggt agataacgta
    14881 tttggttccc ctgtgttaat cgatgatatt ttgaaaaaat ccgatttggt caaccctatc
    14941 gtggtttctc cagatattgg tggggttgtt cgtgcaagag cggtggcaaa attattaaat
    15001 gataccgata tggcaattat tgataaacgt cgtccaaaag cgaatgtatc acaggtaatg
    15061 cacattatcg gtgatgtggc tgatcgtgac tgtattttag ttgatgatat gatcgatact
    15121 ggtggtactt tagtcaaagc ggctgaagcg ctgaaagaac gtggcgcccg tcgtgtcttt
    15181 gcttatgcca cacacgcggt attttcaggc acagcagctc aaaatttagc gaatcctgct
    15241 ttagatgaaa ttgtagtaac tgatactatt ccactgagta atgagattaa agcattaaat
    15301 aaagtacgtg ttttaacatt atccggtatg ttagcagaag caattcgccg tattagcaat
    15361 gaagaatcca tttcagcaat gtttgatgcc taatttatga gaaaaaaccc agtcgaaaga
    15421 ttgggttttt catatctgtt cactactata tttagtttaa gataatttgt atgtattccc
    15481 tgattcgtaa attacttttt gcactagata cggaaaaagc acatcaattc tctattcagg
    15541 cacttgcttt agccggaaaa tcgccttttt cgattctgcc aacacccgat aatccgaccc
    15601 aagtaatggg actcacgttt aaaaatccaa tagggcttgc agccggagcg gataaaaacg
    15661 gtgaagcgat agatggtttt gggaaattag gatttgggtt tattgaggtt gggactatta
    15721 ctcctctcgc tcaagacgga aaccctaaac cgaggcaatt tcgtattgta gatgcagagg
    15781 gaattattaa ccgcaatgga tttaataata aaggcgttga tgttttagta gaaaatgtaa
    15841 aaaatgcaac ctatagtggt attttaggta ttaatattgg aaaaaatgcg gttacaccaa
    15901 ttgagcatag ctttgatgac taccaaattt gtttgcgtaa ggtttaccaa tatgctgatt
    15961 atgtggcggt gaatatttca tcacccaata ccaaaaattt gcgcagttta caatatggtg
    16021 aggcattaga tgatttgctg cgaaacctca aaaatgagca ggcacaactt tcgcaaaaaa
    16081 tggggaaata tcgaccgctt gttttaaaga ttgcgcctga tttaaccgat gaagaaatcg
    16141 tttctgtagc cgatagtctt attcgttacc aaattgatgg ggtgattgcc ggcaatacta
    16201 ccttgtctcg tgaaagtatt gccggattac cgtattcgga acaactgggt ggattaagtg
    16261 gcaagccatt acactcatta agtacaaggt taatttcaaa attatctgcc gagttgggcg
    16321 agagaatacc aattataggt tgtgggggag tccattcgtt agagagtggg caggagaaag
    16381 tgaatgcagg tgctagttta ttgcaagtct attccgcaat gatttaccaa ggaccatcat
    16441 taattcaaac cttagccaaa caccttcagc tgaacagtta gggatagatt tctagttaaa
    16501 aatgattggt taggtttatt tctgtcatct tagtggaata gatggcggta ttagctatct
    16561 atcaaaaata gacaaaattg cctat
//
LOCUS       DANLRW010000052        16491 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.052, whole genome shotgun sequence.
ACCESSION   DANLRW010000052 DANLRW010000000
VERSION     DANLRW010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16491
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.052"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(164..1402)
                     /gene="pepT"
                     /locus_tag="PXA71_001410"
     CDS             complement(164..1402)
                     /gene="pepT"
                     /locus_tag="PXA71_001410"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HDL5105519.1"
                     /translation="MKQSLLNRLLRYTQIHTTSDPKSQTVPSSQQQWDLLHLLKTEVE
                     AMGLSEIYLDPNGYLFASLPANIDKTLPVLGLIAHVDTSPDFNGENVKPQVIEAYQGG
                     NILLNGSGDYLSPTDFPNLNKLIGDTLVTTDGTSLLGADDKSGIAIILSAIEYLQANP
                     HIPHGKIRIGFTTDEEIGRGADHFDVNAFGADVAFTFDGGPLGELQYENFNADAATVT
                     FFGRSVHPGTAKGKMINALERACEFQHRLPPHLTPATSEGREGFIMLHGIEGGIDKAE
                     IHYILRSFERDELAAFGKMLNDTLAEMQQIYGEHCGKVEIVEQYRNMREVLDDYGYLV
                     EIAENAMREQGIEPNLEPIRGGTDGSRLSFMGLPCPNLFTGGENFHGRFEFISVDTME
                     KATKVVIDICRKFADYDFNK"
     gene            complement(1422..1811)
                     /locus_tag="PXA71_001411"
     CDS             complement(1422..1811)
                     /locus_tag="PXA71_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HDL5105520.1"
                     /translation="MYMLDTNTVSYFFRGNANVVAKLKSINPERLCISSVTAAELVYG
                     VAKRNNGQLSQFLDYFLSSVKVLDWNYRCAELYGKLRAEMEKNGKVMGVQDQMIASHA
                     LAEECILVSSDQAFKMVPDLKLENWLH"
     gene            complement(1812..2072)
                     /locus_tag="PXA71_001412"
     CDS             complement(1812..2072)
                     /locus_tag="PXA71_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HDL5105521.1"
                     /translation="MEKIARLFRNGRNQAVRLPVEFEFDAEQVYVSKKENGDILLSLR
                     SRNTEHWQRLFELLPAVVCDETFLDTKERNQSFEQRDPFEVA"
     gene            complement(2188..2400)
                     /locus_tag="PXA71_001413"
     CDS             complement(2188..2400)
                     /locus_tag="PXA71_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnA antitoxin family protein"
                     /protein_id="HDL5105522.1"
                     /translation="MRDEYDFSNAVKNPYAKGLKSKSVVTIRIEDDVISYFKQLAEEV
                     NLPYQTLINLYLKDCVEQKRKPTISW"
     gene            complement(2401..2688)
                     /locus_tag="PXA71_001414"
     CDS             complement(2401..2688)
                     /locus_tag="PXA71_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrnT family toxin"
                     /protein_id="HDL5105523.1"
                     /translation="MEEINGFEWDSEKALRNQQKHGVSFIEAVSVFYDNNAMLIPDPD
                     HSSREERFLLLGRSNKDNLLVVVHCERNTNIRIISARLATKRESGQYKGVH"
     gene            complement(2851..6384)
                     /gene="mfd"
                     /locus_tag="PXA71_001415"
     CDS             complement(2851..6384)
                     /gene="mfd"
                     /locus_tag="PXA71_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDL5105524.1"
                     /translation="MSLISLNLPKSDGNFQDHQTLGNLVGHSDTLAISQAARAFYGLT
                     VVVTPDTRTALRLEKALPQFAGLPVQLFPDWETLPYDNFSPHQDIISARLSALFELQQ
                     GRQQILLLPINTLMQKVCPPNYLANNVLLIKKGDRFSIQKLRLQLENAGYRAVEQVLE
                     YGEYAVRGSILDLFPMGAEEPFRLDFFDDEIDSIRTFDVDNQRTKTEIAEINLLPAHE
                     FPTDSNGIEHFRAKFREKFGEIRREPEHIYQQVSKGILNAGIEYWQPLFFEEMASLFD
                     YFPAQTLFITFADIQQKAEQFHQDTQNRYESHRVDPMRPLLPPSDLWFAIDEVNRWLK
                     GYPRLTITSEKIRKSAAKMNANVANLPDIAIQSSAKEPFSAFQQFRQKFDGNILFSVE
                     SEGRRETLLDLLAPLGVKPKQVNSLDEAQGLPFSLIISPLDQGFVVETGGHGTRPYDD
                     ELNTNGENDNNYVGAGPVPARNLAIICETDLLGERVQTRREKNRKAVNPDTLIRNLAE
                     LKIGQAVVHLENGVGRYGGLTVLDAGGIKAEYLVLHYANDAKLYVPVASLHLISRYIG
                     GADETAPLHKLGSEAWAKTRQKAAEKIRDVAAELLDVYAKRESQTGFAFAYDKAEFDQ
                     FSATFPYEETDDQKIAINAVISDMCQAKAMDRLVCGDVGFGKTEVAIRATFLAVMNHK
                     QVVILAPTTLLAQQHYENFKDRFANYPVNVEVLSRFKTAKEQKTILQNVAEGKVDILV
                     GTHKLLQDDVAFRDLGLLVIDEEHRFGVRQKEKIKQLRANVDILTLTATPIPRTLNMA
                     LNGMRDLSIIASPPARRLLIKTFVRQSDEMVIREAILREILRGGQVYYLHNDVATIEN
                     CAEKLAELVPEARIVIGHGQMRERELERVMSDFYHQRFNLLVCSTIIETGIDVPTANT
                     IIIERADKFGLAQLHQLRGRVGRSHHQAYAYMLTPHPKTLTKDAEQRLEAMSTIDNLG
                     AGFALATHDLEIRGAGELLGSEQSGQIESIGFSLYMDLLENAVKALQEGREPSLDEIT
                     QHQAEIELRVPALLPDDYLPDVNMRLSFYKRIASSENLQSLNDLKVELIDRFGLLPEA
                     TKNLFAITQLRLSAQTLGIKKIDAGIHGGYLEFKPTAQPDPMKFIALIQKQPAVYSFE
                     GAVKFKFRLALEDNRKRLEFVENLLREVVGG"
     gene            6545..7762
                     /locus_tag="PXA71_001416"
     CDS             6545..7762
                     /locus_tag="PXA71_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter"
                     /protein_id="HDL5105525.1"
                     /translation="MKNKILGSALMIAGTTIGAGMLAMPLTSAGMGFGATALLLVGLW
                     ALLAYTGLLFMEVYQTAPQKDVGVASLAEQYFGLIGRVLATFSLLVLLYALLAAYITG
                     GGSLLAGVMPEMADADMKLKISILIFTAVLGTFVVVGVKSVDGLTRVLFLGKIVAFIA
                     VLLMMLPKAKLENLTAIPLDNLLIISAIPIFFTAFGFHVIMGTINSYLDADIGKIRKS
                     IYIGTAIPLVAYLLWQLATHGVLSQNEFTTILTQDPTLNGLVKATSQITGSTILGEMV
                     RLFSVLALITSFLGVSMGIFEGVGDLLKRLNLPTNRLWLTIATFTPPILFALFYPNGF
                     IKALGYAGLLFAFYGMILPIGLAWKARRQYPNLPYRVIGGNLALVVALIAGIIIMVIP
                     FLIQAGYLPQAVG"
     gene            complement(7842..8348)
                     /gene="hutX"
                     /locus_tag="PXA71_001417"
     CDS             complement(7842..8348)
                     /gene="hutX"
                     /locus_tag="PXA71_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization cystosolic carrier protein
                     HutX"
                     /protein_id="HDL5105526.1"
                     /translation="MISIEQQTALRNELAENPGQILEMLAAKYQCTLEEVMLNLPAEM
                     LKVTEGERFAEVLQQIHEWDDAITLISHTEDTIIEFVGKLPSGSISRGFYNFEHKEGG
                     GLQGHLRYENCAKIYLLDRPFMGKRTVSLIFINKKGNAMFKIFVGREKIGGALKEHQI
                     KALYQLIG"
     gene            complement(8403..10481)
                     /locus_tag="PXA71_001418"
                     /pseudo
     CDS             complement(8403..10481)
                     /locus_tag="PXA71_001418"
                     /inference="COORDINATES: protein motif:HMM:TIGR01786.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
     gene            complement(10448..10831)
                     /locus_tag="PXA71_001419"
     CDS             complement(10448..10831)
                     /locus_tag="PXA71_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HDL5105527.1"
                     /translation="MVFTSYSIKSKKLCPTILALSVSSILSSQATYAEETTAELSEVN
                     VVAKEDVKASIEKKNKEIIQQELIQNNRDLVRYSPDVGIVNQGRHQKGFAIRGVEDNR
                     VGISIDGVSLFLIQKKIPFINAMVI"
     gene            10986..11504
                     /gene="hutZ"
                     /locus_tag="PXA71_001420"
     CDS             10986..11504
                     /gene="hutZ"
                     /locus_tag="PXA71_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein HutZ"
                     /protein_id="HDL5105528.1"
                     /translation="MTTNRQEVLQNRLGPEIEELKQQIKTIMLATIDKDGVPNVSYAP
                     FVINNGEYQVLITTIARHARNLQEVPKVSLMLIEDESKSRQIFARRRLTFDATVRMIE
                     RTDEEWNNSIAALKARHGDLVDELSNMQDFKLFSFKPTAGLFVKGFGKAFDVGVDDLI
                     NVVHLDQGHQTA"
     gene            11654..14266
                     /gene="pepN"
                     /locus_tag="PXA71_001421"
     CDS             11654..14266
                     /gene="pepN"
                     /locus_tag="PXA71_001421"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HDL5105529.1"
                     /translation="MQPKAKLRKDYRAPDFTITDIYLDFQLDPDRTFVTSKLTVVRKN
                     PEATTLRLDGHSFDFLSLKYNGEPFSAFQKDDESLTLNLADVPAERFELEIETALNPA
                     QNTSLQGLYKSGDGFCTQCEAEGFRQITYMLDRPDVLAKYTTKITASKSKYPYLLSNG
                     NHIAQGDLHDGRHWVEWQDPFFKPSYLFALVAGDFDLLQDKFITKSGREVTLEIYVDR
                     GNLDRAPWAMESLKRSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKF
                     VLAKPETATDTDYLDIEAVIAHEYFHNWTGNRITCRDWFQLSLKEGLTVFRDQEFTSD
                     LWSRSAKRIEDVRLLRTVQFAEDASPMAHPIRPEKVIEMNNFYTVTVYEKGAEIIRMI
                     HTLLGEEKFQQGMQLYVARHDGSAATCEDFVKAMEDASGVNLEQFRRWYSQSGTPELT
                     ISDEYDETRKAYRLHISQMTPATHDQMDKLNLHIPLKVALYGEQDGKRIPLQYELLTV
                     SDVLDVTAEHQTFEFHNVTQRPVPALLCDFSAPVRLDYNYTTEQLLTLLKHAENDFVR
                     WDAAQMLYTNELRENLSRYQQHQPLSFSEGLVNALTFVLDNSASLPELTALTLTLPKE
                     TEFAESFKTIDPQGIAVVREFMQHSIAHALQDKLLAVYHQNQCGEYQVVAEDIAKRAL
                     RNACLSYLAFTDLGNALVHKHYNNADNMTDTLAALQAATKAQLSCRDALLADFEQKWK
                     HDGLVMDKWFMLQATRPDDDVLSIVQNLMEHPSFNFNNPNRLRSLVGAFCGQNPKAFH
                     AIDGSGYRFLVDTLIKLNESNPQVAARLIEPLIKLSRYDNQRQTLMRRGLERLRELDN
                     LARDLFEKIEKALD"
     gene            complement(14326..14598)
                     /locus_tag="PXA71_001422"
     CDS             complement(14326..14598)
                     /locus_tag="PXA71_001422"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HDL5105530.1"
                     /translation="MVAKLFSVYGRVQGVAFRFFTLQEANRLGIKGYVRNRDDGSVEV
                     VAEADEQTIAQLENWLQQGSPAAKVERVIVSDYLGSERFKRFEVRY"
     gene            complement(14652..16286)
                     /locus_tag="PXA71_001423"
     CDS             complement(14652..16286)
                     /locus_tag="PXA71_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700110.1"
                     /note="is involved in the transport of the murein peptide
                     L-alanyl-gamma-D-glutamyl-meso-diaminopimelate; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HDL5105531.1"
                     /translation="MQSKFSLSLLTTSLVLGLSANVFAAKVPEGTTLAEKQEITINNG
                     FEPSSFDPHKIEGVPESQVAYQLFEGLVTKDSDGNIQPGVAESWENTPDYKTWTFKLR
                     QDAKWSNGDAVTAHDFVFAWQRLVNPLTASPYSSYLTYLNVENAQDIIDGKKKPEELA
                     VKAIDDHTFQVQLSQPVPYAVELATHSSLLPVHKATVEKHGDAWVQKGNLVGNGAYTL
                     ADHVINEKIVFERNKNYWNDKETVINKATFLAIANAATDVSRYRAGDLDMTNYALPPE
                     QFATLKKEIPNEVFTARTLSTYYYEINHKRAPFDNVKVREALNLALDRTIITDKVLGQ
                     GQTPTYVFTPPYIHEGEKIQQPAYSKDSMADRKAKALKLLEEAGYSKANPLKFTILYN
                     TNDNHKKIAIAVSSLWKQGTDGIVDVKLENQEWKTFLDTRRNANYDVSRAGWSADYNQ
                     ATTFVNYFLSNSSNNTAFYKSQAYDDAVAESYKATDAAGRAAAYAKAEEQLAKDYAII
                     PIYNYVNPRLVKPYVKGYEGKDPQDDILLRNLYIVK"
BASE COUNT         4611 a         3674 c         3273 g         4933 t
ORIGIN      
        1 ttaaaaacgc tacgaacctc gtagagtctc aacaggtgca tattctatgg atttcagatt
       61 taatgtcaaa taaatttgta ggaaatctgt aaaaaatcgt ttaattggtg aaaaataacg
      121 ctttttgcaa atttttcatc aaatttgacc gcttgcagcc gccttatttg ttgaaatcat
      181 aatcagcaaa tttccgacaa atatcaatta caacttttgt ggctttttcc atcgtatcaa
      241 ccgaaataaa ctcaaatcgt ccgtggaaat tttcgccgcc ggtaaataaa ttcgggcaag
      301 gcaagcccat aaatgaaagg cgtgagccat cagtaccgcc acggatcggt tctaaattcg
      361 gctcaatgcc ttgttcacgc attgcgtttt cggcaatttc aaccaagtag ccgtaatcgt
      421 ccagcacttc acgcatattg cgatattgct cgacaatctc gacttttccg caatgttcgc
      481 cgtaaatctg ttgcatctct gccagcgtat cattcagcat tttgccgaat gcagctaatt
      541 catcacgctc aaagctacgt aaaatatagt gaatttccgc tttatcaatt ccaccctcaa
      601 tgccgtgcaa cataataaag ccttcacgcc cttcgctggt ggcaggggtt aaatggggag
      661 gcagacggtg ttggaactcg caagctcgct ctaaggcgtt gatcatcttg ccctttgccg
      721 tgccggggtg aacgctacgc ccgaagaacg taacggtcgc tgcatcggca ttgaaatttt
      781 catattgcaa ttcgcccaga ggcccgccat caaaggtaaa ggcgacatcg gcaccgaatg
      841 cgtttacatc aaaatgatct gcgcctcgac cgatctcttc atcggtggta aagccgatgc
      901 ggatcttgcc gtgcggaata tgcggattgg cttgtaaata ctcgatagcc gagagaataa
      961 tcgcaatgcc ggatttgtcg tctgcgccaa gcaaagaggt gccgtcagtg gtgactaagg
     1021 tgtcgccaat cagcttgttt aaattcggga aatccgttgg cgaaagataa tcgccactgc
     1081 cgtttagcaa aatattgccg ccttgataag cctcaatcac ctgtggtttc acgttttcac
     1141 cattaaaatc gggcgaagta tcaacgtggg caatcagccc aagcaccggc agggttttgt
     1201 caatattggc aggcaagctg gcgaacagat agccgttggg gtcaagataa atctcgctta
     1261 gccccatcgc ctctacttcc gttttcagca gatgaagcaa atcccactgc tgttgcgagc
     1321 ttggcacagt ttggcttttc ggatctgaag ttgtgtgaat ttgggtgtaa cgtagtaaac
     1381 ggttaagaag ggattgtttc attgtttttc cttactatag tttagtgtaa ccaattctcc
     1441 aatttcagat caggtaccat tttaaatgcc tgatcactag aaactaaaat acactcttca
     1501 gcaagagcgt gactagcaat catttgatcc tgcacgccca ttactttgcc atttttctcc
     1561 atctctgccc gtaactttcc ataaagttca gcacaacgat aattccaatc taaaaccttt
     1621 acactcgata aaaaataatc taaaaattga gaaagctgcc cattatttct tttcgccaca
     1681 ccataaacca attcagcagc agttacagat gaaatacaaa gcctctcagg attaatggac
     1741 ttcaatttcg ccaccacatt tgcatttcca cgaaaaaaat agcttacagt attcgtatct
     1801 aacatataca tttaagctac ctcaaaagga tcccgttgct caaaggattg gtttctctct
     1861 tttgtatcta aaaatgtttc atcacataca acagcaggca atagctcaaa caatcgttgc
     1921 caatgctcgg tatttctcga tctcaatgat aataaaatat cgccattttc ttttttagaa
     1981 acatagactt gctctgcatc aaactcaaat tcaaccggta aacgcactgc ttggttccgc
     2041 ccgttacgga ataatctcgc aattttttcc atcttacttt accctccgat agatagtgta
     2101 tatgccaaag tatatgccta ttttatacaa ctggcaagat aacccattct caaatactca
     2161 ataacatact gatttcaaat cataatatta ccaactaata gtcggtttac gtttctgctc
     2221 aacgcaatct ttcaaataaa gattgatcaa cgtttggtaa ggcaaattca cctcttcggc
     2281 aagttgttta aaatagctga taacatcgtc ttcaatccga atagtaacca cacttttgct
     2341 ttttagccct tttgcgtaag ggtttttcac tgcattagaa aaatcgtatt catctctcat
     2401 ttaatgtact cctttatatt gcccactttc gcgttttgtt gccaaacgtg ctgaaataat
     2461 ccgaatgttg gtatttctct cgcaatgcac aaccacaagt agattatctt tattgctacg
     2521 cccgagtagc aaaaaacgct cttccctaga tgagtgatct ggatccggga ttaacatcgc
     2581 attattatca taaaatacgc ttaccgcctc gataaaacta actccgtgtt tttgttgatt
     2641 acgaagagct ttctcactat cccattcaaa accattaatt tcttccattg ccagtttact
     2701 cctttttaat tgtaaataaa atatatttac atctattttt ttaagttata aacagcctag
     2761 atgaaattac tggattcgca ataaacaaaa acgattttta cgatacagat cgcaaaaatc
     2821 gtttttcaag attgacaacc ttaggaggct ttatccgccc acaacctccc ttagcaaatt
     2881 ttccacaaat tctaaccgct tgcggttgtc ttcgagtgct aagcggaatt tgaacttcac
     2941 cgccccttca aaactgtaca ccgctggttg tttttggatt aaggcgataa acttcattgg
     3001 gtcgggctgg gctgtcggtt taaattcaag ataaccgccg tgaatgccgg catcgatttt
     3061 cttaatcccg agcgtttgtg ccgacaagcg aagttgggtt atcgcaaaca ggtttttggt
     3121 tgcctctggg agcaagccga agcgatcgat cagctccact ttcaagtcgt tcaggctttg
     3181 cagattttcc gagcttgcga tccgcttgta gaacgacaga cgcatattca cgtcaggcag
     3241 ataatcgtcc ggcaataagg ccggtacacg caattcaatc tccgcttggt gttgggtgat
     3301 ttcatcgagg ctcggttctc gcccttcttg caaagctttg accgcatttt cgagcaagtc
     3361 catatagagc gaaaaaccga tgctttcaat ctgtccgctc tgctccgaac cgagcaattc
     3421 gcctgcacca cgaatttcta aatcgtgggt cgccaacgca aaaccggccc cgagattatc
     3481 aatggtactc atcgcctcca agcgttgctc ggcatctttg gtgagcgttt tcgggtgcgg
     3541 tgtgagcata taggcgtagg cttggtggtg cgagcgtccg acccgtccac gcagttggtg
     3601 cagttgtgcc agcccgaatt tgtccgcccg ttcgataata atggtattgg cagtcggcac
     3661 gtcaatcccc gtttcaataa tggtggagca aaccagcagg ttaaagcgtt gatgatagaa
     3721 atcgctcatc acccgctcca attcacgctc acgcatctgc ccgtgtccga tcacaattct
     3781 tgcctctggc acgagttcag ccaatttctc ggcacaattt tcaatggttg ccacatcgtt
     3841 atggaggtag taaacctgcc caccacgcag aatttcacgc aaaattgcct cacggattac
     3901 catttcatca ctttgtcgca caaaggtttt gattaaaagt cggcgagccg gcgggctggc
     3961 gataatcgag agatcacgca ttccgttgag tgccatattc agcgttcttg gaattggcgt
     4021 ggcggtgagg gtcagaatat ccacattggc acgcagttgt ttgattttct ctttttggcg
     4081 tacgccgaaa cggtgttctt catcaatcac taaaagccca agatcacgga acgctacatc
     4141 gtcttgcaac agtttgtgcg tgccgaccaa aatatccact ttgccctccg ccacattttg
     4201 caaaatcgtt ttctgctctt tggcggtttt aaagcgagac agcacttcca cattcacagg
     4261 gtaattggcg aaacggtctt tgaaattctc ataatgctgt tgggcgagca aggtagttgg
     4321 ggcaagaata accacctgtt tatggttcat cactgccaag aaagtcgctc gaatggccac
     4381 ttcggttttg ccgaagccga catcgccaca caccaatcta tccatcgctt tggcttggca
     4441 catatcgcta attacggcat tgatggcaat tttctgatcg tccgtttcct cataagggaa
     4501 agtggcacta aactgatcaa attccgcttt atcgtaggca aacgcaaaac cggtttggct
     4561 ttctcgtttg gcataaacat caagcaattc tgccgccaca tcacggattt tttccgctgc
     4621 tttttggcgg gttttcgccc acgcttcact gcctaattta tgtagcggcg cagtttcatc
     4681 cgccccaccg atataacggc tgattaaatg gagcgaggca accggcacat agagtttggc
     4741 atcgttagca taatgtagca cgagatattc ggctttgatc ccaccagcgt ccagcacggt
     4801 taagccaccg taacgcccca cgccgttttc caaatgcacc accgcctgtc cgattttgag
     4861 ttctgctaaa ttacggatta aggtatcagg attgacggct ttgcggtttt tctcacgccg
     4921 tgtttgcaca cgttcgccca gcaggtcggt ttcgcagatg atggcaaggt tgcgggcggg
     4981 cacaggaccc gcccctacgt agttattatc attttcgcca tttgtattta attcatcatc
     5041 gtagggacgg gtcccgtgcc cgcccgtttc caccacaaac ccttgatcaa gcggtgaaat
     5101 aatcagggaa aatggcaaac cttgtgcttc atctaatgaa ttgacctgct tcggcttcac
     5161 cccaagcgga gcaagcaaat ccagcaaggt ttctcttcgc ccttcgctct ccaccgaaaa
     5221 cagaatgttg ccgtcaaatt tttggcggaa ttgctggaaa gcagaaaacg gctctttggc
     5281 agaggattga atagcaatat ccggcaagtt agccacattt gcattcattt tcgctgctga
     5341 tttacggatt ttctccgaag ttatcgttaa acggggatag cctttcagcc agcgatttac
     5401 ctcatcaatc gcaaaccaga gatcactcgg cggcagtagc ggtcgcatcg gatccactcg
     5461 gtggctttca tagcggtttt gggtatcttg gtgaaattgt tcagcttttt gctgaatatc
     5521 ggcgaaagtg ataaacagcg tttgggcagg gaaatagtca aacagacttg ccatttcctc
     5581 aaaaaacaac ggctgccaat actcaatccc tgcatttaaa atgcctttgc tgacttgctg
     5641 ataaatatgc tccggctcac ggcggatttc accgaatttt tcacggaatt tggctctaaa
     5701 atgctcgatc ccgttgctat cagtcgggaa ctcgtgtgcc ggcagtaaat taatttcggc
     5761 aatttccgtt ttggtgcgtt ggttatccac atcaaaagtg cggatactgt cgatctcatc
     5821 atcgaaaaaa tcgaggcgaa acggctcttc tgctcccatc gggaataggt ctaaaatcga
     5881 gccacgcacg gcgtattcac catattccaa cacctgttcc accgcccgat agccggcatt
     5941 ttccagttgt aaccgcagtt tttgaatcga aaaacggtcg ccttttttaa tcaacagcac
     6001 attgttagcg agataattcg gcgggcagac cttctgcatt aaggtgttga tcggcaacag
     6061 caaaatctgc tgtcgccctt gttgcagttc aaacagggca gaaagtcggg cggagataat
     6121 gtcttggtgc ggcgaaaaat tgtcataagg caaggtttcc caatcgggga acagttgcac
     6181 tggcagccct gcaaactgag gcaaggcttt ttccaagcgt aacgccgtgc gggtgtcggg
     6241 tgtgacaacc accgtcaagc cgtaaaaggc tcgggcagct tggctgatcg caagggtatc
     6301 ggaatgcccg acaaggttac cgagggtttg atgatcttga aaattgccgt cagatttcgg
     6361 cagattaagt gaaattaaag acatacaagc ggtctgtttt aaataaaaaa ttgcaaattg
     6421 ttgcttagtt tactaaagca cggctgattg tgcaaaataa gcggagaaat tatgttatct
     6481 agatcgcatt gcgaaaaaat tctgataaaa tgttcccctt ttttaactct tactcacaca
     6541 tattatgaaa aataaaattt taggaagtgc attaatgatt gcaggcacta ccattggtgc
     6601 aggaatgctt gcaatgccac tcacctctgc aggaatgggt tttggggcaa ccgcattact
     6661 cttagtcgga ttatgggctt tattggccta caccggttta ttatttatgg aagtttatca
     6721 aaccgctccg caaaaagatg ttggagtggc aagccttgcc gagcaatact ttggcttaat
     6781 cgggcgtgta ttagccactt tcagtttgct cgtactactt tatgccctac ttgcggctta
     6841 tattaccggt ggtggttcac tgttagccgg tgtaatgcct gaaatggcag atgctgatat
     6901 gaaactgaaa atcagcattt taatcttcac tgcggtatta ggtacatttg tggtagtcgg
     6961 cgtgaaatcg gttgatggtt taacccgagt actgtttttg ggaaaaattg ttgcttttat
     7021 tgccgtgttg ctgatgatgc tgcctaaagc gaagctggaa aacttgacag caattccatt
     7081 agataactta ctcattattt ctgctatacc cattttcttc actgcgttcg gtttccacgt
     7141 tattatggga acaattaata gctatttaga cgcagatatc ggcaaaattc gtaaatctat
     7201 ttatatcggg acggcaattc cgctagtggc ttatttattg tggcagctcg ctacacacgg
     7261 ggtattaagc caaaatgaat tcaccacaat tttgacacaa gatccgacct taaacggctt
     7321 ggtgaaagcc actagccaga ttaccggtag tacgatttta ggcgaaatgg ttcgcttatt
     7381 ctcagtgctt gcattgatta cctcattttt aggggtttcg atgggaattt ttgaaggcgt
     7441 gggcgatttg ttaaaacgct taaatctacc gactaaccgt ttatggctga ccatcgccac
     7501 ctttacaccg ccaattctgt tcgctttatt ctatccgaac ggctttatta aggcattagg
     7561 ttacgccggt ttactctttg cgttctatgg tatgatttta cctatcggct tagcgtggaa
     7621 agcacgtcgc caatatccga atttacctta ccgtgtgatt ggtggtaatt tggcattagt
     7681 ggttgcgtta attgccggta ttatcattat ggtcattccg tttttaattc aggctggcta
     7741 tttaccgcaa gcggtaggct aatattgaaa agggctacga ttcaatatcg tagccctttc
     7801 tataagttac aagcggtcat ttttcgatga ctttttacag attagccaat caactgatac
     7861 agcgccttaa tttgatgctc ttttaatgcc ccgccaattt tctctctgcc gacaaaaatc
     7921 ttaaacattg cgttgccttt tttattaatg aaaatcagtg aaacagtacg ttttcccata
     7981 aaaggacgat ccaacaaata aattttggca caattttcgt agcgtagatg cccttgtaag
     8041 cctccgccct ctttatgttc gaaattgtaa aatccacgag aaattgaacc gcttgggagc
     8101 tttcccacaa actcaataat ggtatcttcc gtatgcgaaa tcagcgtaat cgcatcgtcc
     8161 cattcgtgga tttgctgtag cacttcggca aaacgttccc cttcggttac ttttagcatt
     8221 tcagccggta aattcagcat tacctcttcc agcgtgcatt gatattttgc cgctaacatt
     8281 tctaaaattt gccccggatt ttcggctaat tcattgcgta aggcggtttg ttgttcgatt
     8341 gatatcatta aatgttcctt taagtaaaga gagtttctta gctctctaag taaatttgta
     8401 aattagaaac ggtattcaaa attagccgag aagttacgtc caggttcata atagcgttgt
     8461 aatccaggat agccaccgta agttgcattt tcacgtactc caacagaatt aacgattcca
     8521 cctgttgtat ttaaaccacg taaagtatcc caagtatggt atttacggtt aaacaaatta
     8581 taaataccgg cacgtaatgt aatattctca gttggtttat agaaaccgta taaatccaca
     8641 acaaaggctt tagcatttaa gtgcttccag gtatctaaac ctgtctcgtg agaatattca
     8701 gtacaacgaa tgtcatattc atccccccaa taagggtaat acggatttgg cgttctatcc
     8761 tctttaaggc atttttccgg taatgttttt aaatattttg catctttcgc ctttttagcc
     8821 cccaagaatg tgaagcgaga aaatactccc catttacctt caggttgttc ataatctaag
     8881 ccaactacgg ctttaatcgg ctgaatagaa agtaaatctg ccccgttaga catactacct
     8941 ttgctgtaac cgaaggctcc aaatagcttc cagccttcag gtattggcat agctgaattt
     9001 aaattccatt taccactcac ttctagcccg tagattttcg cagaatcaat attttgcatt
     9061 tgctgtaccg ggcgccaaaa ctctctacca tatgcttggt aaacatccca ggtttcttgc
     9121 tcccataaaa aatctttata tttagtatgg tggaaattaa ctgagagcag cccaacattg
     9181 ccactacctt gcaaacttaa attttggctt aaactacgtt ccgcttttag gtttggattg
     9241 gacatccaag ctcctgcagc attatcacgg taatcaaaat acatttctga tgcatttgga
     9301 atacggaagc ctgtcccaat gttatatcct actttccatg cctcagtcag atgtttttct
     9361 aaaccggtaa cccaagttag ttgattaaat ttcgcattgt cagtttttac gcagttacga
     9421 caaacaagac cattgagttc ttgttgttca tacttcgccc aatcataacg aatgcctagc
     9481 gttgcaatcc aatcatgcgt taaatcaatc ttatcgtgca atgaaaaagt gtgctgtttc
     9541 gttttaattg ggtacatcat cgtagaatcg ggagaattta cccaaacacc ggataaataa
     9601 accgagtcct tatgtaatac atcgaaatct ctctctgcag tagaggcttt gaaagatagc
     9661 tgatgagtcc atttaccaaa ttctaatgct tggctgtcta aacggaaatt taagcgtttc
     9721 aattcagtat taaaaatacg aatattattg tcacttggtt ttctttgttt agcagggctc
     9781 cagtctgttg catcttcagc gcgtgtacct tcatagttat aagcagatgt ttcagtatct
     9841 tgataatctg catctatctt cgctagagat atccattttg actctgggaa atactcataa
     9901 aaaacattta ctgtatcacg tttactacgg tcttccgctt cacgccaaaa agaagtaata
     9961 gtaacggctg aatcttcgat aatataattt ttattatttt gcccactgta agaaacacca
    10021 acgcggtgat tatcattaaa tcgataagca aatttggcta aataattatg atgattatga
    10081 gtagaatcat caggagtttg tttactactg cgtaaagagc gagtttgtag agaatcttca
    10141 ggaagtgtat aacctcctgc acttttcatt tcatgcccat ggcgatttga ataaaccaat
    10201 atcgcctcag ctttctcacc taaatatcca acaccgaatg tattcaacca ttcattatta
    10261 cgagtaccat atcctgtgcg ataaaaagca ccaaatttat taccgttacg aacaatatca
    10321 taaggctcaa gcgtccgata attaactccg ccgcctaaat taccactacc ttgattgaaa
    10381 gaatctgcac ctttagatac ttcaatagta cgagctaatt ccggatctat agattggcga
    10441 gatgtattta aattaccata gcgtttataa agggaatttt cttctgaatc aggaaaagcg
    10501 agacaccatc aatacttatt cctacacggt tgtcttccac tccacgaata gcaaatcctt
    10561 tttgatgtct accttggtta acaatgccaa catcagggct ataacgaact aaatctcgat
    10621 tattttgaat caactcttgc tgaattatct ctttattttt cttttctata gaagccttca
    10681 catcttcttt agcaacaaca tttacttcag ataattccgc tgttgtttct tccgcatagg
    10741 tagcttgtga agacaaaatg ctactaacgc ttaaagccaa tatagtcggg cacaattttt
    10801 tagactttat tgaataagag gtaaacacca tgattctccc tagatagatt tttaatatac
    10861 tttattatta ataagatgta ttatcagtta catcacattt atagtcaata atgattctca
    10921 tatggattga aagttttcac tctttatagt aatctaaaaa aacactattt aaattgaggt
    10981 attttatgac aaccaaccgt caagaggtct tacaaaaccg tttaggtcca gaaattgaag
    11041 aattaaaaca acaaatcaaa actataatgc ttgcaaccat agataaagat ggtgtaccga
    11101 atgtgagcta tgcccctttt gtaattaata acggcgaata tcaagtctta atcactacta
    11161 ttgcccgtca cgctcgtaat ttacaagagg tgccaaaagt ctctttaatg ctaattgagg
    11221 atgaaagtaa gagccgtcaa atttttgccc gtcgtcgctt aacctttgac gcaacagtgc
    11281 gaatgattga acgtactgat gaggaatgga ataatagcat tgcagcactt aaagctcgtc
    11341 acggcgattt agttgatgaa ctgtcaaata tgcaagattt caagctcttt agctttaagc
    11401 caacggcagg cttatttgta aaaggatttg gtaaagcctt tgatgttggt gttgatgact
    11461 taattaatgt cgttcattta gaccaaggcc accaaactgc ctaattgcga aataaactca
    11521 cggctataaa taatcctatt tatagccgtt tttattgcga caagcggtca aattttttgg
    11581 aaaatttacc gctattttag tacaataacg acactattct atgagctaaa cgcaactaaa
    11641 aaaaggaaat cctatgcaac ctaaagcgaa actcagaaaa gattatcgag ctcccgattt
    11701 cactattact gatatttatc ttgacttcca acttgaccca gatcgcactt ttgtcacctc
    11761 aaaactaact gtcgtgcgta aaaatcctga ggcgacaaca cttcgtttag acggtcatag
    11821 tttcgatttc ctttcgctta aatataacgg cgagccgttt tccgcctttc aaaaagatga
    11881 tgaatcttta accttaaatt tagccgatgt gcctgccgag cggttcgagc ttgaaattga
    11941 aaccgcatta aatccggcac aaaacacctc gttacaaggt ttgtataaat cgggcgacgg
    12001 gttttgcacc cagtgtgagg ctgaaggttt ccgccagatt acctatatgc tcgaccgccc
    12061 tgatgtactt gcaaaatata cgacaaaaat caccgctagt aagagcaaat acccgtatct
    12121 gctttctaac ggcaaccaca ttgcccaagg cgacttgcac gatggcagac actgggtgga
    12181 atggcaagat ccgttcttta aaccaagcta tttatttgcc ttggttgcgg gggattttga
    12241 cttactccaa gataaattca tcaccaaaag cggacgtgaa gtcacgcttg aaatttatgt
    12301 cgatcgtgga aatttagacc gtgcaccttg ggcgatggag agcttaaaac gttcaatgaa
    12361 atgggatgaa gagcgtttcg gtttggaata cgatttagat atttatatga ttgttgccgt
    12421 tgatttcttc aatatgggag caatggaaaa caaagggtta aatattttca attccaaatt
    12481 tgtattggca aaaccggaaa ccgcaaccga tacggattat ttagatattg aagcggtgat
    12541 tgcccacgaa tacttccata attggacggg caaccgcatt acctgccgtg attggttcca
    12601 actaagctta aaagagggct taaccgtctt ccgtgatcag gaatttacct ccgatttatg
    12661 gtctcgttcg gcaaaacgga ttgaagatgt gcgtttactg cgtaccgtac aatttgccga
    12721 agatgccagc ccgatggctc acccgattcg cccggaaaaa gtgattgaaa tgaataattt
    12781 ctacaccgtg actgtgtatg aaaaaggggc ggaaattatt cgtatgattc acaccctgtt
    12841 aggcgaagaa aaattccagc aaggtatgca actttatgtg gcaagacacg atggttctgc
    12901 ggcaacttgt gaagatttcg ttaaagcaat ggaagatgct tcaggcgtta atcttgaaca
    12961 attccgccgt tggtatagcc aatccggcac gcctgagctc accatttccg atgaatatga
    13021 tgaaacccgc aaggcatacc gcttgcatat ttcacaaatg acaccggcaa cccacgatca
    13081 gatggataaa ctcaatctgc atattccgct taaagtagcg ttatatggtg aacaggacgg
    13141 taaacgcatt ccgttacaat atgaattatt gaccgtaagc gatgtgttag atgtaaccgc
    13201 agaacaccaa acctttgagt ttcataatgt aacacaacgc ccggtgcctg cattactgtg
    13261 tgatttctct gcaccggtac ggttagatta caactatacc accgagcagc ttttaacctt
    13321 actcaaacac gctgaaaatg attttgtacg ctgggatgca gctcaaatgc tctataccaa
    13381 tgaactgcgt gaaaatttaa gccgttatca gcaacatcaa ccactcagct tctcagaagg
    13441 gttggtgaat gccctaacgt tcgtgttgga taactcagca agcctgccgg aactaactgc
    13501 attaaccctc acattgccaa aagaaaccga gtttgcagaa tcgttcaaaa ccattgaccc
    13561 acaaggtatt gcggttgtgc gtgaatttat gcagcattcc attgctcacg ccttgcaaga
    13621 taagttatta gcggtatatc accaaaacca atgcggggaa tatcaagtcg tggctgaaga
    13681 tattgctaaa cgagccttgc gtaatgcttg cttaagctat ttagccttta ctgatttagg
    13741 caacgcgttg gtgcataagc attacaataa tgccgataat atgactgata cgcttgctgc
    13801 attacaagcc gcaaccaaag cccagctaag ttgccgtgat gcattattag ccgattttga
    13861 gcaaaaatgg aaacatgatg gtttagtgat ggataaatgg tttatgctac aagccacccg
    13921 accggacgac gatgtgttat ccatcgtgca aaatttaatg gaacacccaa gttttaactt
    13981 taataacccg aaccgtttac gttcattagt aggtgcattc tgcggtcaaa acccgaaagc
    14041 cttccacgcc attgacggtt caggctatcg tttcttggta gatacgctga ttaaacttaa
    14101 cgaaagtaac ccacaagttg ctgctcgact tattgagccg ttaattaaac tctcacgcta
    14161 cgataaccaa cgccaaacct tgatgcgtcg tggtctagaa cgcctgcgtg agctggataa
    14221 tttagcacga gatctgtttg agaaaattga aaaagcgtta gattaaacca agcaatacaa
    14281 gcggtgtcgt ttgcaaattt ttttacaaat gacaccgctt gttagttaat accttacctc
    14341 aaacctttta aacctttctg agccaagata atcgctcaca attacccgtt ccacctttgc
    14401 agcaggtgag ccttgttgta accaattttc cagttgagcg attgtctgtt catccgcttc
    14461 agctaccact tctaccgagc cgtcatcacg atttctgaca tagcctttta tgcctaatcg
    14521 attcgcttcc tgcaaggtaa aaaaccgaaa agcgacacct tgaacccgtc cgtaaaccga
    14581 gaataatttt gcgaccattc ttcccccata aaaataggct gcttattttt caataaacag
    14641 cccataatgt cttatttcac gatgtagagg ttacgcagta aaatatcatc ttgcggatct
    14701 ttaccctcat agcctttcac gtaaggtttc accaaacgtg ggtttacata gttataaatc
    14761 ggaataatcg cataatcttt ggctaactgc tcctctgctt ttgcataagc agctgcacga
    14821 ccagctgcgt ctgtcgcttt gtaagattct gctaccgcat catcataagc ttggctctta
    14881 taaaacgcag tattgttgct ggagttcgat aagaaatagt tcacaaaggt ggttgcttgg
    14941 ttatagtctg ccgaccaacc tgcacgagaa acatcataat ttgcattgcg gcgggtatct
    15001 aagaatgttt tccactcttg gttttctaat ttcacatcaa caatgccgtc tgtgccttgt
    15061 ttccataatg atgaaactgc aatcgcaatt ttcttgtggt tgtcgttggt attataaaga
    15121 atagtaaatt ttaacgggtt cgctttactg taaccggctt cttccaataa tttcaacgct
    15181 ttggcttttc tatctgccat tgaatctttg gaataagcag gttgctggat tttttcaccc
    15241 tcgtgaatat aaggcggtgt aaatacataa gttggtgttt gaccttgtcc tagcacttta
    15301 tcggtaataa tggtgcgatc taaagctaag tttaacgcct cacgcacttt cacattatca
    15361 aacggtgctc gtttatggtt aatttcatag taataagtag aaagggttct tgccgtaaac
    15421 acttcgtttg gaatctcttt tttcaaggtt gcaaactgct ccggtggaag agcatagttg
    15481 gtcatatcca aatcaccggc acggtaacgt gaaacatcag ttgcggcatt agcaatggct
    15541 aagaaagtcg ctttattaat cacggtttct ttatcattcc aataattttt attacgctca
    15601 aacacgattt tttcattaat aacgtgatcg gctaaggtat aagccccgtt tccaaccaga
    15661 ttgccttttt gcacccacgc atcgccgtgt ttctcaacgg ttgctttgtg tacaggtaat
    15721 aaagaagagt gtgttgccag ctcaactgca tacgggacag gttggcttaa ctgcacctgg
    15781 aaagtatgat catcaatcgc tttaactgct agttcctccg gttttttctt gccgtcaata
    15841 atatcttgag cattttctac attgagataa gttaaatagc ttgaataagg tgaagccgta
    15901 agtggattaa ccaaacgctg ccaagcaaat acgaaatcgt gagcagttac ggcatcaccg
    15961 tttgaccatt tagcgtcttg gcgtaatttg aacgtccacg ttttgtaatc cggtgtattt
    16021 tcccaacttt ctgccacacc cggctgaata ttgccgtcag aatctttcgt taccaatcct
    16081 tcaaataact gataagcaac ttgcgattcc ggcacgccct caattttatg tggatcaaaa
    16141 cttgatggct caaaaccatt attaatcgta atttcttgtt tttctgcaag cgttgttcct
    16201 tcaggcactt tggctgcaaa cacatttgcc gataagccta acactaatga ggttgttaat
    16261 aaggaaagcg agaattttga ctgcatattt gatctccatt gatgaatatt ggcttgcaac
    16321 cagccgattt gttctaatta atttttttaa gtctaggcat tattattttg attgcaagga
    16381 atttttttaa aaaatgtgat agatatcacc tttcaatgca aaaattgcat aaaaaaatcc
    16441 cgaagaaaat agctctataa actctgataa tggctagata acttgctgta a
//
LOCUS       DANLRW010000053        16414 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.053, whole genome shotgun sequence.
ACCESSION   DANLRW010000053 DANLRW010000000
VERSION     DANLRW010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16414
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.053"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            32..3103
                     /gene="fdnG"
                     /locus_tag="PXA71_001424"
     CDS             32..3103
                     /gene="fdnG"
                     /locus_tag="PXA71_001424"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014550636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:617..619,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HDL5105532.1"
                     /translation="MQISRRKFFKVCAGGMAGTSAAMLGFAPATALAAPREYKLLRAK
                     ETRQTCTYCAVGCGMIMYSLGGEAMNSKGKLIHIEGDSDHPVSRGALCPKGAGALDYV
                     NSDRRVHYPEVREAGSSEWKRISWHEAIERIARHMKNDRDENFVTHNEAGLEVNRWMT
                     AGFLAGSACSNETGIVTQKFIRSLGMIFTDNQASIUHGPTVASLAPSFGRGAMTNHWV
                     DIKNSDLVIVMGGNAAEAHPVGFRWAVEAKKQNGAKLMVVDPRFNRSAAVADIYIPLR
                     PGTDIAFLLGAVNYLLKNDKIQHEYVKHYTNATFLLNEGFKFEDGLFTGYDEATRTYK
                     DKSTWAYQLDEQGQPKRDMTMQDPRCVINMLKDHVSRYTPEMVERITGTPQKDFLIFC
                     EEIAKTSAPDKAATFLYALGWTQHTVGAQNIRSMAIIQLLCGNIGVSGGGVNALRGHS
                     NVQGITDLGLFPHMLPGYIRLPTEADATLESYLNAIAPKTLVAGQVNYGQNNPKFAVS
                     MLKTFYGDKATKENEFGYHYLPKYPKGGTDHFRFIEQMYQGKVNGYFCQGMNPIASYP
                     NSQKLIKALSNLKYLVIFDPLITDTSEFWKNHGEFNNVNPSEIQTEVFRLPTTCFAEE
                     DGSIANSGRWLQWHWKAADAPHEAKPDVDILSEIRAELIHLYHKEGGKAPLEPLEAMT
                     WNYMNPLEPKPEEIAKENNGYALEDLKDADGNIIVKKGELLSSFTQMRDDGTTSGGCW
                     IYCGQWTPKGNQMANRDNSDPSGLGNTLGWAFSWPVNRRILYNRASADLSGKPWNPKR
                     QLVKWNGKNWNYVDVADYGTAPPNSPVTPFIMQPEGVSGLFVRERMQDGPFPEHYEPF
                     ETPIGTNPLHPNVISSPVARILPSDKEDLGTSDEFPYVGTTYRLTEHFHYWTKNALIN
                     VIAQPEQFVEIGEKLAEEKGIKNGDKVRVWSKRGEIKAVAVVTKRIRSLVSDGKPIHT
                     IGVPIHWGFAATTGAKKGYFANNLTVRTGEPNSNTPESKCMLLNIEKIVGA"
     gene            3106..4020
                     /gene="fdxH"
                     /locus_tag="PXA71_001425"
     CDS             3106..4020
                     /gene="fdxH"
                     /locus_tag="PXA71_001425"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HDL5105533.1"
                     /translation="MSTVQTQNIIKISATSALTPAPQARSHQVEVAKLIDVTTCIGCK
                     ACQVGCSEWNDIRSDVNANCVGVYDNPADLNAKAWTVMRFNEVEENDRLEWLIRKDGC
                     MHCAEPGCLKSCPSPGAIIQYANGIVDFQSDKCIGCGYCIAGCPFNIPRMNPDDNRVY
                     KCTLCVDRVNVGQEPACVKTCPTGAIRFGSKEEMKFYAEQRIADLKSRGYENAGLYDP
                     EGVGGTHVMYVLHHADKPELYSGLPKDPKIDTTVTLWKDVLKPVAAVALGGLALAEVA
                     HYITVGPNVEEDLEEHHHSENAEGGKHE"
     gene            4013..4690
                     /locus_tag="PXA71_001426"
     CDS             4013..4690
                     /locus_tag="PXA71_001426"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HDL5105534.1"
                     /translation="MSKKFEITNDTKIVRHKPLARVSHWFLVISFFMTMFTGVAFFFP
                     DFAWLTEILGTPQIARAVHPFTGIIMFIAFIIMALIYWHHNIPEKNDIRWAKGIVEVL
                     KGNEHKVSDNGKYNLGQKLLFWTLILAMFTLLATGIIMWRQFFSHYFSIPMLRIAILL
                     HSASAFMLFTGILVHMYMAFWVKGSIRGMVEGWVTVRWAKKHHPRWYREEVLPELERQ
                     VAEQNNK"
     gene            4746..5663
                     /gene="fdhE"
                     /locus_tag="PXA71_001427"
     CDS             4746..5663
                     /gene="fdhE"
                     /locus_tag="PXA71_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HDL5105535.1"
                     /translation="MSIKILPQDDIKQAASSFQQPELLFANPKNLYLRRAKRLRELAK
                     QNPFGEYMEFSANLVDIQLALLESQPIADYSQKITACVERTQGETPLNAQNFQRTDEW
                     RTLLLAIIEKFKPYANDTVLATIEVLEKAAKSELDTLADNLLNERYELVGADKAVFIW
                     AALSLYWVQLAQQLPRNSRAEIGHKHLCPVCNSAPVSSVIHFGEAQGLRYLHCSLCES
                     EWHVVRTKCTNCDETGKLDYWSLDTVEAAVKAESCGDCHSYLKVLYQDKDVNVEPVAD
                     DLATLFLDSEMEQKGLSRSGINPFLFQVE"
     gene            complement(5733..6119)
                     /locus_tag="PXA71_001428"
     CDS             complement(5733..6119)
                     /locus_tag="PXA71_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105536.1"
                     /translation="MLRNFMIMLHFIYGFAMKNAFSFFVISLFLTMNSISYASNPIPS
                     NKEKLNGVKKQQDKPKFRISERKVLKNKEKDEEVSNFSMEELRVGAQRPLDDSVIQYF
                     KSQCRYAFMSDREIIANRCEVKKIAD"
     gene            complement(6130..7500)
                     /gene="gorA"
                     /locus_tag="PXA71_001429"
     CDS             complement(6130..7500)
                     /gene="gorA"
                     /locus_tag="PXA71_001429"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009499791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HDL5105537.1"
                     /translation="MAKHYDYIAIGGGSGGIASINRAASYGQKCAIIEAKHLGGTCVN
                     VGCVPKKVMFYGAQVAEAINHYAPDYGFDITVNNFDYAKLVESRQAYIGRIHTSYGNV
                     LAKNNVDVLNGFARFKDAKTLEVSYADGSVEEVTADHILIATGGRPTVPNVKGAEYGI
                     TSDGVFALDALPKSVAIVGAGYIAVELAGVFNSLGVNTHLFVRQHAPMRNQDPLIVDT
                     LLEVLAQDGIELHTQATPQEVVKNADGSLTLKLQDGRETSVESLVWAIGREPATDKIN
                     LEAAGVETNERGFIKVDKFQNTNVPNIYAVGDIIEGGIELTPVAVAAGRRLSERLFNN
                     KPNEHLDYSLVPTVVFSHPPIGTVGLSEPKAIEQYGAENVKVYKSSFTAMYTAVTQHR
                     QPCRMKLVCVGEGEKVVGLHGIGFGVDEMIQGFAVAIKMGATKADFDNTVAIHPTGSE
                     EFVTMR"
     gene            complement(7577..8101)
                     /locus_tag="PXA71_001430"
     CDS             complement(7577..8101)
                     /locus_tag="PXA71_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HDL5105538.1"
                     /translation="MHSELNTRANILGKIIFASRWLQLPIYLGLIVVQGIYAYKFIKS
                     LYHLVINLNEMDSNTVMLAVLNLIDVVMIANLLVMVIVGGYETFVSRLKVDDHPDQPE
                     WLDHVNATILKVKLSMAIISISSIHLLQTFINASNLDEKQMMWQVVIHLAFIVSALAM
                     AYIDKMLNSGHMKH"
     gene            complement(8196..8834)
                     /locus_tag="PXA71_001431"
     CDS             complement(8196..8834)
                     /locus_tag="PXA71_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDL5105539.1"
                     /translation="MELKHTIEQRKTIKAFNSTIKISRTELEEMVALSQLAPSKANLQ
                     PWRFVIIDVEILKAALSKNVAFNGPPCETASAIVVILADLQYEKLLGAIVDQSVETGC
                     LHKEFRERKFDFLLNLHNQATQAEIRDQVLIDTSLAAMQLMLIAKDKGYDTHAIGVFE
                     RPAVLKLLNIDAERYLPVMLLAIGKAANPALPSCRLPLEYTVSWNDGQGFKI"
     gene            complement(8976..9770)
                     /locus_tag="PXA71_001432"
     CDS             complement(8976..9770)
                     /locus_tag="PXA71_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5105540.1"
                     /translation="MALLEVNHLNKRFVERSSLFHKQDFYAVKEVSFTLNRKETLAII
                     GENGAGKSTLAKMVAGMVGPTSGELIFRGTPLSFGDYKYRAKHIRMMFQDPNDAFDPN
                     YNIGQILDAPLRLATDLNEEERNERIFNTLKLVGMYPEQALVPISEASSGQKQRIAFA
                     RALILEPEIIIADDTINSLDFSVKTQLINLMLSVQQRQGIAYIYVGQNLGLIKHIADK
                     IMVMQSGEVVEYGLTKEVLLNPQHQITKRLIESHFGKHLSSYAWAS"
     gene            complement(9871..10947)
                     /gene="fbaA"
                     /locus_tag="PXA71_001433"
     CDS             complement(9871..10947)
                     /gene="fbaA"
                     /locus_tag="PXA71_001433"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014990940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HDL5105541.1"
                     /translation="MSLLNIVKPGVVTGDDVQKVFAYAKEHNFAIPAVNCVGSDSVNA
                     VLETAARVKSPVIVQFSNGGAQFYAGKGIKPASGARADVLGAIAGAKHVHQLAEEYGV
                     PVILHTDHAAKNLLPWIDGLLEAGEKHFAETGRPLFSSHMIDLSEEPIEENMEICREY
                     LARMDKIGMTLEIEIGVTGGEEDGVDNSDVDESKLYTQPSEVLYVYDQLSPISPRFTI
                     AAAFGNVHGVYKPGNVKLKPSILGASQEYVSKERGLPAKSLDFVFHGGSGSSREEIRE
                     AISYGAIKMNIDTDTQWAAWDGILQFYKANEAYLQGQLGNPTGPDAPNKKYYDPRVWL
                     RKMEESMSKRLEQSFEDLNCVNVL"
     gene            complement(11044..12219)
                     /locus_tag="PXA71_001434"
     CDS             complement(11044..12219)
                     /locus_tag="PXA71_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDL5105542.1"
                     /translation="MSVIKMTDLDLAGKRLFIRADLNVPVKDGKVTSDARIVATIPTL
                     KLALQKGAKVMVTSHLGRPTEGVFEEENSLQPVVDYLNASDLGVPVRLVRDYLDGVEV
                     NENEIVVLENVRINKGEKKNDPELAKKYASLCDVFVMDAFGTAHRAEGSTYGVAEYAP
                     VACAGPLLAAELDALGKALKEPQRPMLAIVGGSKVSTKLTVLDSLSKIADQLIVGGGI
                     ANTFIAAEGHAVGKSLYEEDLIPEAKRLAQVTNIPVPVDVRVGTEFSETAPATEKAVS
                     EVRADESIFDIGEKSSEQLAEIIRNSKTILWNGPVGVFEFPNFRKGTEVISNAIAEAT
                     ANGAFSIAGGGDTLAAIDLFGIKDKISYISTGGGAFLEFVEGKVLPAVEILEKRANG"
     gene            complement(12474..13832)
                     /locus_tag="PXA71_001435"
     CDS             complement(12474..13832)
                     /locus_tag="PXA71_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL5105543.1"
                     /translation="MANQQQERQSWSNRLAYIMTVAGATVGFGATWRFPYLVGEHGGG
                     AYVFLFCIAMIVIGIPMILVENVIGRRMRVNAIDAFAGFANGKKIASGWKILGYMGLL
                     GAFGILAYYMVLGGWVLNYIGSLLTGTLDLSQPVTVGTTQQFFQQSIFNSPMTIIAYT
                     ALFVLVNYFILVKGIVDGIERSVKYLMPILFIFLIVMVVRNITLPGAAEGIAFYLMPD
                     FSKITPKLFVFVLGQVFFALSLGFGVLITLSSYLDKSENLVKTATITGVMNTLIAVLA
                     GFMIFPSLFSFGVAPNSGPTLVFQSLPIVFSNMWGGTVFAVIFFSLLVVAALTTSLTI
                     YEVIITALQEKAKISRQKAIFITLATIFLLGNIPSALSDNILQDVQVMGKSIFDAFDY
                     ISGNILFILTALGSAIFVGFVLKEEAKEELGAGKMFTTIWFNYVRFVIPVIILVIFFN
                     SL"
     gene            complement(13902..14729)
                     /locus_tag="PXA71_001436"
     CDS             complement(13902..14729)
                     /locus_tag="PXA71_001436"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HDL5105544.1"
                     /translation="MNHPKHRAFLKWAGGKYRLIPDIQTHLPKKACLVEPFVGAGSVF
                     LNTDFERYILADINPDLINLFNVVKADVEEYIAQTKQLFLHPQANTEAFYKARRAEFN
                     RSKDIFRRSVIFLYLNRFGYNGLCRYNQKKGYNVPFGRYKTHYFPEKELRFFAEKAQK
                     ATFVCADFEQVFELAKNQLTDYVIYCDPPYAPLAQETNFTQYAGGGFSLEQQGRLATL
                     ALEMKGLGVPVLISNHDTDFTRRIYQSADITQIQVQRSIGQKVGSRVKVGELFALFI"
     gene            complement(14743..15831)
                     /gene="aroB"
                     /locus_tag="PXA71_001437"
     CDS             complement(14743..15831)
                     /gene="aroB"
                     /locus_tag="PXA71_001437"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDL5105545.1"
                     /translation="MLQVNVELKERRYPIIIGAGLLNQPASYSPLKSGDKVMIVSNPT
                     VATHYLSVVTNALKELGCHVDSVLIPDGEEYKTLESLNLIFTALLEKNHNRDTTLIAL
                     GGGVIGDVAGYAAASYQRGIRFIQIPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQP
                     VSVIVDTNTLHTLSKREVSAGLAEVIKYGAIFDVTFFEWLEKHIDDLVSLKQDELEYC
                     IQRCCQLKADVVARDETEKGDRALLNLGHTFGHAIEARMGYGVWLHGEAVSVGMLEAA
                     ELSRILGDLSPQEVARLEKLLARANLPTISPDGMEPAEYLPYMWRDKKVLAGQLRLIL
                     LKSLGEAYVSSQATESQVLASIERFTQR"
     gene            complement(15855..16376)
                     /gene="aroK"
                     /locus_tag="PXA71_001438"
     CDS             complement(15855..16376)
                     /gene="aroK"
                     /locus_tag="PXA71_001438"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HDL5105546.1"
                     /translation="MAEKRNIFLIGPMGAGKSTIGRQLAQTLGMEFMDSDSVIEERAG
                     ADIDWIFDVEGEEGFRKREERILNELTQNYGIVLSTGGGSILSKDNRNVLSARGIVIY
                     LETTVDKQFERTQRDKKRPLLQTEDPRKTLEELAKIRNPLYEEIADITIHTDEQSAKV
                     VANQIIDMIDNLQ"
BASE COUNT         5047 a         3595 c         3087 g         4685 t
ORIGIN      
        1 tatttctcac attatgtgat ttggagtgat tatgcagatc tcaagacgta agttcttcaa
       61 ggtctgtgca ggtggtatgg cgggaacttc tgctgcaatg ttgggttttg ctccagcaac
      121 agcattagct gcaccgcgtg agtataagct cttaagagca aaagaaactc gacaaacctg
      181 tacttactgc gcggtaggct gtggcatgat tatgtacagc ttaggcggcg aagcaatgaa
      241 cagcaaagga aagttaattc atattgaggg tgattctgac catccagtaa gccgtggggc
      301 gttatgtccg aaaggtgcag gggcgttgga ctatgttaat agtgaccgcc gtgtgcatta
      361 tccggaagtg cgtgaagccg gttcaagtga gtggaaacgc atttcttggc acgaggcaat
      421 tgaacgtatt gcccgccata tgaaaaatga ccgtgatgag aacttcgtca cccacaatga
      481 agcagggctg gaagtaaacc gttggatgac ggcaggtttc ttggcaggct cggcgtgtag
      541 taacgaaacc ggtatcgtca cccagaagtt tatccgctct ctcggtatga tttttaccga
      601 caaccaagcg agtatctgac acggaccaac ggtagcaagt cttgctccat catttggtcg
      661 cggtgcgatg accaaccact gggttgatat taaaaactcc gatttagtga tcgttatggg
      721 cggtaacgca gccgaagctc accctgtggg tttccgttgg gcagttgaag cgaaaaaaca
      781 gaacggtgcg aagttaatgg tggtagatcc acgctttaac cgtagtgctg cggtggcgga
      841 tatttatata ccattgcgtc cgggtacgga cattgcgttc ttgttaggtg cggtaaacta
      901 cctgcttaaa aacgacaaaa ttcaacacga gtatgtgaag cattacacca atgccacatt
      961 cttactcaac gaagggttta aattcgaaga cgggcttttc accggctacg atgaagccac
     1021 tcgtacctat aaagacaaat ccacttgggc ttatcagtta gatgaacagg gtcagccgaa
     1081 acgggatatg acaatgcaag atccacgttg tgtgatcaat atgctcaaag accacgtttc
     1141 ccgctatacg cctgaaatgg tagaacgcat taccggtacg ccacaaaaag atttcctgat
     1201 tttctgtgaa gagattgcga aaacctcagc gccggataaa gccgccacct tcctctatgc
     1261 cttaggttgg acacaacaca ccgtgggcgc acaaaacatt cgctcaatgg cgatcattca
     1321 gttgctgtgc ggtaacattg gtgtctccgg cggtggggta aacgcactgc gtggtcactc
     1381 taatgtacaa gggattaccg acctaggctt gttcccacat atgttgccgg gctatatccg
     1441 cctgccaacc gaagcggacg caaccttaga aagctactta aatgcgattg caccgaaaac
     1501 cttagtggca gggcaagtaa actacgggca aaacaacccg aaattcgctg tgagtatgct
     1561 caaaaccttc tacggcgata aggcaaccaa agagaacgag ttcggctatc actatttacc
     1621 gaaatacccg aaaggcggta cagatcactt ccgctttatc gaacagatgt atcaaggcaa
     1681 agtgaacggc tatttctgcc aaggtatgaa cccgattgcc tcttacccta actcgcagaa
     1741 gttaattaaa gcgttgagca atttgaaata tttagtcatt tttgacccgc ttattaccga
     1801 tacttccgag ttctggaaaa atcacggtga gttcaacaat gtgaacccgt ctgaaattca
     1861 aaccgaagtg ttccgcttgc cgaccacttg ctttgcggaa gaagatggtt caattgcgaa
     1921 ctccggtcgc tggttacaat ggcactggaa agcagcagac gcaccacacg aggcaaaacc
     1981 ggacgtggat attctgtctg aaatccgtgc cgaactgatc cacctttatc ataaagaagg
     2041 cggaaaagca ccgcttgaac cgttagaagc gatgacgtgg aactatatga acccgttaga
     2101 accgaagccg gaagagatcg ccaaagagaa caacggttat gcattggaag atctgaaaga
     2161 tgcagacggc aacatcatcg tgaaaaaagg cgaactatta tccagcttta cacaaatgcg
     2221 tgatgacggt acaacctccg gtggttgttg gatctactgc ggtcaatgga ctccgaaagg
     2281 taaccaaatg gcgaaccgtg ataactccga cccatcaggc ttaggtaaca ccttaggctg
     2341 ggcattctcg tggccggtaa accgccgtat tctatacaac cgtgcatcgg cagatttaag
     2401 cggtaaaccg tggaacccga aacgccagct agttaaatgg aacggtaaaa actggaacta
     2461 tgtggacgtt gccgattacg gtacagcacc accaaatagc cctgtgacac catttattat
     2521 gcaaccggaa ggggtatccg gcttgttcgt gcgtgaacgt atgcaagacg gtccattccc
     2581 tgagcattat gaaccgtttg aaacgccaat cggcacgaac ccgttacacc cgaatgtaat
     2641 cagcagtccg gtggcacgca ttctgccgag cgataaagag gatttaggca ccagcgatga
     2701 gttcccatat gtcggtacaa cttaccgctt aaccgaacac ttccactact ggacgaaaaa
     2761 tgccctgatt aacgtcattg ctcaaccgga gcaattcgtg gaaatcggcg agaaacttgc
     2821 cgaagagaaa ggcattaaaa atggcgacaa agtacgtgtt tggtctaaac gtggcgaaat
     2881 taaagccgtt gccgtggtga ctaaacgtat ccgttcattg gtctctgacg gcaaaccaat
     2941 ccacactatc ggtgtgccga tccactgggg ctttgcggct acaaccggtg cgaaaaaagg
     3001 ctattttgcc aataacttaa ccgtgcgaac aggtgaacca aactcaaata cacctgaatc
     3061 gaaatgtatg ttattaaaca ttgagaaaat tgtgggggct taacaatgag tacagttcaa
     3121 actcaaaaca ttattaaaat ctccgcaacc tcggcgctga caccggcgcc gcaggctcgt
     3181 tcgcaccaag tggaagtagc gaaactgatc gatgtcacca cttgtatcgg ctgtaaagcc
     3241 tgtcaagtgg gctgttcaga atggaatgac attcgctccg atgtaaatgc aaactgtgtc
     3301 ggcgtgtacg acaaccctgc ggatctaaat gcgaaagcgt ggacagtaat gcgctttaac
     3361 gaagtagaag aaaacgaccg tttagaatgg ttgatccgta aagacggctg tatgcactgt
     3421 gccgagccgg gttgcttgaa atcttgcccg tcaccgggtg cgattatcca atacgccaac
     3481 ggtattgttg atttccaatc cgacaaatgt atcggttgtg gctactgtat cgcaggttgt
     3541 ccgttcaaca ttcctcgtat gaatccggac gataaccgtg tttacaaatg caccctgtgt
     3601 gtggatcgtg tcaatgttgg tcaagaaccg gcttgcgtga aaacctgccc gaccggtgca
     3661 atccgcttcg gtagcaaaga agagatgaag ttctatgcag aacaacgcat tgctgatctg
     3721 aaatctcgtg gctatgaaaa tgccggcttg tacgaccctg aaggcgttgg cggtacgcac
     3781 gtaatgtatg tattacatca tgccgacaaa ccggagcttt attcaggctt accgaaagat
     3841 ccgaagattg ataccacagt aaccttatgg aaagacgttt taaaacctgt ggcggcagta
     3901 gcgttgggtg gtttagcttt agcagaagtt gcacactata ttaccgttgg gccaaacgtt
     3961 gaggaagatc ttgaagaaca ccaccatagc gaaaatgcag aaggaggcaa acatgagtaa
     4021 gaaatttgaa atcacgaacg ataccaaaat cgttcgtcat aagcccttag ctcgtgttag
     4081 ccactggttc ttagtaatct ctttttttat gacgatgttt accggtgttg ccttcttctt
     4141 ccctgacttt gcttggctta ccgagatttt aggtactcca cagattgccc gtgcagtcca
     4201 cccatttacc gggattataa tgtttattgc atttattatt atggcgttaa tatattggca
     4261 ccataatatc cctgagaaaa atgatattcg ttgggcaaaa ggcattgttg aagtactaaa
     4321 aggtaatgag cataaggttt ccgataatgg aaaatacaat ttgggtcaaa aattactctt
     4381 ttggactctt attcttgcga tgttcactct tttagccaca gggattatta tgtggagaca
     4441 atttttctct cactacttct cgattcctat gctaagaatt gcaattttac ttcattcagc
     4501 aagtgcattt atgctattta ccggaatttt agtacatatg tatatggcat tctgggtaaa
     4561 aggctcaatc agaggtatgg ttgagggttg ggttaccgtt cgctgggcaa aaaaacacca
     4621 cccaagatgg taccgtgaag aagtgctacc tgaattagaa agacaagtag ctgagcaaaa
     4681 taataaataa cctcaagtgc ggtattatta ccgcactttt attttattgg tttaaaaaga
     4741 atattatgag tatcaaaata ctacctcaag atgatatcaa acaagcagct agttcatttc
     4801 agcaacccga gctcttattt gctaatccca aaaatctgta tttacgccgc gctaagcggc
     4861 tacgtgaatt agccaagcaa aacccattcg gtgaatatat ggagttttct gctaacctcg
     4921 tggacattca attagcatta cttgaaagcc agccaattgc agattattct caaaaaataa
     4981 ccgcttgtgt agagcgcacg caaggagaaa caccgctaaa tgcacagaat tttcagcgta
     5041 ctgatgaatg gcggacacta ctcttagcca ttattgagaa attcaagcct tatgcaaatg
     5101 atactgttct tgcaacaatt gaagtattgg aaaaggcagc taagtcagag ctagacacac
     5161 ttgctgataa tttgctaaat gaacgatacg aacttgtggg cgcagataaa gctgtcttta
     5221 tttgggctgc tctctcactt tactgggtac aattagctca acaattacca cgtaattctc
     5281 gtgcagaaat aggccataaa catttatgtc cggtatgtaa ctcagcacct gtaagcagtg
     5341 tgattcattt cggtgaagct caagggttac gttatctaca ctgttcttta tgtgaaagtg
     5401 aatggcatgt agtacgtaca aagtgtacaa actgtgatga aaccggcaaa ctggattatt
     5461 ggagcttaga tacagtagaa gcagcagtta aagctgaaag ttgtggcgac tgccattcct
     5521 acttaaaagt actctatcaa gataaagacg tgaatgtgga acctgttgct gatgatttag
     5581 caactctatt cttagattcc gagatggaac aaaaaggtct ttcaagaagt gggataaatc
     5641 catttttatt tcaagtagag taactcattt acaacaaaaa cggagcataa cgctccgttt
     5701 tttattacat ttaactcata cactatactt ttttaatcag ctattttttt aacttcacag
     5761 cggttagcaa taatctcccg atctgacata aatgcgtatc ggcattgaga tttaaaatat
     5821 tgaatcacag aatcatcaag aggtcgttgt gctccaacac gtaattcctc catagaaaaa
     5881 ttactaacct cttcatcttt ctctttattt ttcaatacct tacgttcaga tattctaaac
     5941 ttaggcttgt cttgctgttt ttttactccg tttaattttt ctttattact aggaatagga
     6001 ttacttgcat aactaatact attcatcgta agaaaaagag aaataacaaa aaagctaaaa
     6061 gcgtttttca tagcaaaccc ataaataaaa tgtagcataa tcataaaatt acgtaacatt
     6121 ttattacatt tagcgcatgg ttacaaattc ttcagatcct gtcgggtgaa tagccactgt
     6181 gttgtcaaaa tcagctttcg ttgcgcccat tttaattgca acagcaaaac cttgaatcat
     6241 ttcatcaaca ccaaaaccaa taccatgtaa cccaaccact ttttcccctt ccccaacaca
     6301 aactaatttc attcggcaag gttgacgatg ttgtgtaacc gcagtataca ttgcagtaaa
     6361 tgaagattta tacactttca cattttctgc cccatattgc tcaatcgctt ttggctcact
     6421 taaaccaaca gtacctattg gtgggtggct aaaaacgact gtcggtacta agctataatc
     6481 caaatgttca tttggtttat tattgaacaa ccgttccgat agcctgcgac cagctgcaac
     6541 tgcaacagga gttaattcaa taccaccttc aataatatca ccaacagcat agatatttgg
     6601 cacattagta ttttggaatt tatccacttt gataaaacca cgctcgttgg tttcaacacc
     6661 agcagcctct aaattaatct tatctgtcgc tggctcacga ccaatagccc acaccaagct
     6721 ttcaacagag gtttcacgac catcttgcaa ttttaatgtc aatgaaccat ctgcattttt
     6781 aactacttct tgaggagtcg cttgtgtatg taattcgatc ccatcttgag ctaatacttc
     6841 aagcaatgta tccactatta atgggtcttg attacgcatt ggagcatgtt gacgaacaaa
     6901 aagatgggta tttactccta aactattaaa tactccagct aattcaactg caatataccc
     6961 tgcccccaca attgctacgg acttcggtaa agcatctagt gcaaatacac catcagaagt
     7021 gataccgtat tcagcccctt tcacattggg tacagttgga cgaccacctg ttgcaatcag
     7081 aatatggtct gctgtgacct cctcaacgga accatcagca taactcactt ctaatgtttt
     7141 agcatcttta aagcgagcaa aaccatttaa aacatcaaca ttattttttg ccagcacatt
     7201 accatatgag gtatgaatgc gcccaatata ggcctggcga ctctcaacta atttggcata
     7261 atcaaaatta tttaccgtaa tgtcaaaacc ataatcaggg gcgtaatggt taatcgcttc
     7321 tgcaacttgt gcaccataga acatcacttt tttgggtaca catcccacgt tcacacaagt
     7381 gccacctaaa tgttttgctt caataatggc acatttttgc ccatagcttg ctgctcgatt
     7441 aattgaagca ataccaccac taccaccgcc gatagcaata taatcataat gtttagccat
     7501 aagctattcc tcgatctata aaaacaaaag caacttattc gttaagcgct ttatcaaatt
     7561 aaatttgcat agaagactaa tgtttcatat gccctgaatt caacatttta tcaatatacg
     7621 ccatcgctaa tgctgaaaca ataaaggcta agtgaataac tacttgccac atcatttgct
     7681 tttcatcaag atttgaagca ttgataaatg tttgtaataa atgaatagaa gaaatactga
     7741 taattgccat tgaaagtttt actttcaaaa tagtcgcatt aacgtgatcc aaccattctg
     7801 gctgatcagg gtgatcatct acttttaatc tagagacaaa agtttcatat cctccaacaa
     7861 taaccataac caaaagattt gcaatcatca ccacatctat taaatttaat accgctaaca
     7921 taacagtatt tgaatccatt tcatttaaat tgataactag atgatacaat gatttaataa
     7981 acttatacgc atatatcccc tgtacaacaa tcaaccctaa ataaataggt aattgtaacc
     8041 aacgacttgc gaaaataatt ttacctaaaa tatttgccct agtatttaat tccgaatgca
     8101 tatatctcct ataaatagca atacaaaaat aaattacaac gctcaaattt taacaatttt
     8161 ttgccaaaaa attaagatat ttaaccgctt gcaccttata ttttaaaacc ttgtccatcg
     8221 ttccaagaaa ccgtatattc tagaggtaaa cggcaacttg gcaacgctgg gtttgctgct
     8281 ttaccgatag ctagtagcat aacaggcaaa taacgttctg catctatatt caataatttt
     8341 aatacagcag ggcgctcaaa cacgcctatc gcatgagtat catagccctt atctttggca
     8401 attagcatta attgcattgc cgccaaacta gtatcaatta atacctgatc tctaatttct
     8461 gcttgagttg cttggttatg aagatttagt aaaaaatcaa atttacgttc acgaaactct
     8521 ttatgcaaac acccagtttc taccgattga tcaacaattg cgcctaataa tttttcatat
     8581 tgcaaatctg ccaatatcac cacaatagca gacgctgttt cacaaggtgg gccattaaag
     8641 gcaacatttt ttgataatgc tgctttaaga atttcaacat caataatgac aaaacgccaa
     8701 ggttgcagat ttgcttttga gggagcaagc tgggataaag cgaccatttc ttctaattca
     8761 gttctactaa tcttaattgt tgaattaaaa gctttgatag ttttacgctg ttcaatcgta
     8821 tgtttcaatt ccatctcttt tctcctatct ctcaaacaat tgagatagtc tataatttaa
     8881 agattaggaa tgtaataatt gaaaagagtt attctgcata tttattgaaa taggtcaaaa
     8941 ttatcaagta atcatattag agcaggagta aagatttagc ttgcccaagc ataggaacta
     9001 aggtgctttc caaaatgact ttcaattaaa cgtttcgtaa tttgatgttg cggattcagt
     9061 aaaacctctt tcgtcaagcc atactctact acttcgccac tttgcatcac cattatttta
     9121 tcggcaatat gtttgatcag acctaaattt tgccccacat aaatataagc aatcccttgt
     9181 cgctgctgga cacttaacat taaattaatt aattgtgttt tgactgaaaa atccagtgaa
     9241 ttaatcgtat catccgcaat aataatttcc ggttctaaaa ttaaagcacg agcaaacgca
     9301 atacgctgct tttgcccact ggaagcctct gaaataggaa cgagcgcttg ctcaggatac
     9361 attcctacca attttagcgt attaaaaata cgctcatttc tttcctcttc atttaaatct
     9421 gtcgccaagc ggagcggagc atctaaaatt tgtcctatat tataattagg atcaaaggca
     9481 tcgttagggt cctgaaacat catacgaata tgcttagctc ggtatttata atcgccaaat
     9541 gaaagcggtg ttcctctaaa aatcagttct ccagatgttg gcccaaccat accagcaacc
     9601 attttagcca aggtagattt cccagctccg ttttcaccaa taatcgctaa agtttccttg
     9661 cgatttaggg taaaagaaac ttcttttacc gcataaaaat cttgtttatg aaataggcta
     9721 ctacgttcaa caaaacgctt attcagatga ttaacttcaa gtaatgccat aataaattgg
     9781 tgcttggaaa taaagtgata gtttaccgca aaaaataaat aaaaaaagac cgcttataca
     9841 agcggcctga tttatggaat tttttgcaaa ttataaaacg ttcacacagt ttaagtcttc
     9901 gaaagattgc tctaagcgtt tagacataga ctcttccatt ttacgtaacc aaacacgtgg
     9961 atcgtagtat tttttgtttg gtgcatcagg gcctgtcggg ttacctaatt gaccttgtaa
    10021 atatgcttcg tttgctttgt agaattgaag aataccgtcc cacgcagccc attgggtgtc
    10081 agtgtcaatg ttcattttga ttgcaccgta gctgattgct tcacgaatct cttcacgtga
    10141 agaaccagaa ccgccgtgga aaacgaagtc taatgacttt gccggtaaac cacgctcttt
    10201 agatacatac tcttgtgaag cacctaagat tgatggtttt aattttacat tacccggctt
    10261 gtaaacaccg tgtacgttac caaatgctgc cgcaatcgtg aaacgtgggc tgattgggct
    10321 taattggtcg taaacatata aaacttcaga aggttgggtg taaagtttag attcatctac
    10381 atcagaatta tctacgccat cttcttcacc accggttacg ccgatttcga tttcaagggt
    10441 cataccgatt ttgtccatac gggctaaata ttcacggcag atttccatat tttcttcgat
    10501 tggctcttca gataaatcga tcatatgtga agagaataac ggacgaccgg tttctgcgaa
    10561 gtgtttttcg cctgcttcaa gtaagccatc gatccaaggt aataagtttt tcgcagcgtg
    10621 gtcggtgtga agaatcacag gcacaccata ttcttctgct aattgatgaa cgtgttttgc
    10681 acccgcaatc gcccctaata catctgcacg agcgcctgaa gccggcttaa tgcctttacc
    10741 cgcatagaac tgcgcaccac catttgagaa ttgcacgatt accggtgatt ttacacgagc
    10801 ggctgtttct aatacggcat taactgaatc tgaacccacg cagtttactg ccggaatagc
    10861 gaagttgtgt tctttagcat aagcgaaaac tttttgtacg tcgtcgcctg ttactacacc
    10921 cggttttacg atgtttaata atgacatttt tttcttcctt tgtatgaaat gtgcaaaagc
    10981 acattgttaa aatatacggc caaatcttgc aaaattttca caaaatttga ccgcttgtaa
    11041 ctgttagccg ttagctcgtt tttctaagat ttccactgcc ggtaatactt taccttccac
    11101 gaattctaag aacgcaccgc caccggttga aatgtaagaa attttgtctt tgataccgaa
    11161 taaatcaatc gcagctaagg tatcgccacc accggcaatt gagaatgcac cgtttgccgt
    11221 tgcttctgca atcgcatttg aaatcacttc tgttccttta cggaagttag ggaactcaaa
    11281 cacgccgacc ggaccattcc aaaggatggt ttttgaatta cggataattt cagctaattg
    11341 ctctgacgat ttttcaccaa tatcgaaaat tgattcatca gctcgtactt cactcaccgc
    11401 tttttccgtt gccggtgcag tttcagagaa ttcagtacct acacgcacat caaccggaac
    11461 aggaatattg gttacttgtg ctaaacgttt tgcttcaggg attaaatctt cttcgtataa
    11521 tgatttaccc acagcgtgac cttctgcggc aataaaggta ttggcaatac caccgcccac
    11581 gattaattgg tcggcaattt ttgaaagcga atcaagcaca gttaatttag tagatacttt
    11641 agaaccaccc acaatcgcta acattggacg ttgtggctct tttaatgctt tgcctaatgc
    11701 atctaattca gcggctaata acggacctgc acacgcaaca ggggcatatt ctgccacacc
    11761 gtaagttgaa ccttccgcac ggtgagctgt accgaatgcg tccattacaa acacatcaca
    11821 aagtgatgca tatttttttg ctaactcagg gtcgtttttc ttctcacctt tgttaatacg
    11881 cacgttttca agcaccacga tttcattctc gtttacttca acaccgtcta agtaatcacg
    11941 cactaaacga acaggaacac ctaaatctga tgcatttaag taatcaacta caggttgtaa
    12001 agagttttcc tcttcaaata cgccttctgt cggacgacct aaatgcgaag ttaccattac
    12061 tttagcacct ttttgtaacg ctaattttaa ggttggaatg gtagcaacaa tacgggcatc
    12121 tgatgttact ttgccatctt ttaccggtac gttaaggtca gcacgaataa ataaacgttt
    12181 acccgctaaa tcaaggtcag tcattttaat aacagacata gtttgttcct ctttagatta
    12241 aaatttaaaa gtgataacgg tcggattata tcagtttcta atcattttgg gctaacctag
    12301 atcaaataaa tgattaattt tttatcattt tagaatgcta ttatcctgac tgttcttatt
    12361 cccccccaat atgcttggtt aattaagcaa gaattgcaaa ttccccacaa aatttaaccg
    12421 cttgtcacta aaaataaagc tgtttgaaaa tccattcaaa cagcttatag aatttagagt
    12481 gaattaaaga aaatcaccaa gataatcacc ggaatcacaa agcgaacata gttaaaccaa
    12541 atagtggtaa acattttacc cgcacctaat tcctccttcg cctcttcttt tagaacaaag
    12601 ccaacgaaaa tcgcgctacc taaggcggtt aaaataaaca gaatattgcc actaatataa
    12661 tcgaaggcat caaaaatgct cttgcccata acctgcacat cttgcaatat attgtcactt
    12721 aatgctgatg gaatattacc caacagaaaa atagtagcca aagtaataaa aatagctttt
    12781 tgacggctaa tctttgcctt ctcttgcaat gcagtgataa taacttcata aatagttaac
    12841 gaggttgtta atgccgccac cactaataga ctaaaaaaga taaccgcaaa aactgttccc
    12901 ccccacatat ttgagaacac aatcggcaaa ctttggaata ctaaagtcgg acctgaattt
    12961 ggagcaacgc caaagctaaa taatgacgga aaaatcataa aaccggcaag taccgcaatt
    13021 aaggtgttca tcaccccagt aattgttgct gtttttacta aattctcgct cttatcaagg
    13081 tagcttgaaa gggttatcaa cacaccaaaa ccaaggctta atgcaaaaaa tacttgaccc
    13141 agcacaaaca caaacaattt tggtgtgatt tttgaaaaat cgggcatcag ataaaaggca
    13201 atgccttcag cagcccccgg taaggtaata tttcgaacca ccatcacaat caggaaaata
    13261 aacagaatcg gcatcaaata tttcactgaa cgctcaatac cgtccacaat gccttttacc
    13321 aaaataaaat aattcaccaa tacaaaaagt gccgtataag caataattgt cattgggcta
    13381 ttaaaaatac tttgttggaa gaattgttgg gtcgtgccaa cggtaacagg ttgagacaga
    13441 tctagtgtcc ccgtgagtaa gctaccgata taatttaata cccaaccacc aagtaccata
    13501 tagtaggcaa gaataccaaa tgctccaagc aagcccatat agccaagaat tttccaacct
    13561 gaggcaattt ttttaccatt agcaaaaccg gcaaaagcat caatagcatt cactctcatt
    13621 cggcgaccaa ttacattctc cactaatatc atagggatac caattacgat catcgcaata
    13681 caaaataaaa acacataagc accgcctccg tgttccccca caagataagg gaaacgccaa
    13741 gttgcaccaa aaccgactgt tgcaccagca acggtcataa tatacgccaa tcggttagac
    13801 caagattggc gttcttgttg ttgatttgcc atttaatact ccatcggcta acaataccgc
    13861 ttcaaccaac aagcggtcag atttttagaa aatattacaa attaaatgaa gagtgcgaat
    13921 aactcgccaa ctttaaccct tgagcccacc ttctgcccta ttgaacgctg tacctgaatt
    13981 tgggtaatat cggcagattg ataaatccta cgggtaaaat cagtatcgtg atttgaaatt
    14041 aatacgggaa cgcctaatcc tttcatttct aaagccagtg ttgccaaacg cccttgttgc
    14101 tctaggctaa aaccaccgcc agcatattgc gtaaaattcg tttcttgtgc taaaggagcg
    14161 taaggtgggt cgcagtaaat cacataatcc gttaattgat tttttgccaa ctcaaagacc
    14221 tgttcaaaat ccgcacacac aaaagttgcc ttttgtgctt tttcagcaaa aaaacgtagt
    14281 tctttttctg gaaaataatg ggttttataa cgcccaaagg gaacattgta cccttttttc
    14341 tggttataac ggcaaagtcc gttatagcca aatcgattta aatacaaaaa aatcaccgag
    14401 cgacgaaaaa tatcttttga gcgattaaac tccgcacggc gtgctttata aaaggcttct
    14461 gtattcgctt gtgggtgaag aaacagttgc tttgtttgcg caatatattc ctcaacatct
    14521 gctttcacca cgttgaaaag attaatcaag tcaggattaa tatcagcaag aatataacgt
    14581 tcaaaatctg tattcagaaa gaccgaacct gcaccaacaa aaggctcgac taaacaagcc
    14641 ttttttggca aatgggtttg aatatctgga attaagcgat atttaccgcc agcccatttt
    14701 aaaaaggctc gatgcttagg gtgattcatt tcattttaaa cattaacgtt gggtaaaacg
    14761 ctcaatagag gctaatactt gagattctgt ggcttgcgat gaaacgtaag cttcaccaag
    14821 tgatttcaat aaaattaggc gtaattgacc tgccagtact tttttatctc gccacatata
    14881 aggtagatat tctgccggtt ccattccatc aggtgaaatt gttggcaaat tggctcgggc
    14941 caataatttt tccaagcgag caacctcttg aggacttaaa tcccccagaa tacgagataa
    15001 ttccgcagcc tctagcatac caaccgaaac agcctctccg tgtaaccata caccatagcc
    15061 catacgtgct tcaatggcgt gaccaaaggt atgtcctaag tttagtaatg cacgatctcc
    15121 tttttccgtt tcatctcgag caaccacgtc agcttttagc tggcaacaac gctgaataca
    15181 atattccagc tcatcttgct tgagactgac caaatcatca atatgctttt caagccattc
    15241 aaaaaaagta acatcaaaga ttgcaccgta tttgatgact tccgccaaac cagcactgac
    15301 ttctcttttg gataaggtat ggagcgtatt ggtatcaaca atcacagaaa caggctgata
    15361 aaaagcccca atcatatttt taccgagtgg gtggtttact gccgttttcc cgcctactga
    15421 agaatcaact tgagccagta aagtggtcgg aatttgtata aaacgaatac cacgttggta
    15481 agaggcagct gcatagcctg caacatcacc gattacacca ccgcctaaag caattaaagt
    15541 ggtatcgcga ttatgatttt tttctaataa tgcggtaaaa atcaaattta atgattctag
    15601 cgttttatat tcttcaccgt cgggaatcaa taccgaatca acgtggcaac ccagctcctt
    15661 taacgcattt gttaccacac taagataatg tgtcgccacc gttggatttg agacaatcat
    15721 caccttatct ccagatttta atgggctata actagcaggc tgatttaata accctgcacc
    15781 aattataatc gggtaacgac gctcttttaa ttccacattg acttgtaaca tatcttagct
    15841 cctttcttac ctggctactg taaattatca atcatatcaa taatttgatt tgccactact
    15901 ttagcgctct gctcgtccgt atgaatagta atatctgcaa tttcttcata caatgggtta
    15961 cggattttcg ctaactcttc caacgtttta cgggggtctt ctgtttgcaa taaagggcgt
    16021 tttttatctc gctgagtacg ttcaaactgt ttatccactg tcgtttctaa ataaataacg
    16081 ataccacgag ccgataacac attacggtta tctttagata aaatcgaacc accgccagtt
    16141 gaaagcacga taccataatt ttgcgtcagt tcatttagaa tacgttcttc acgcttacgg
    16201 aaaccctctt caccttcaac atcgaagatc caatcaatat ccgcacctgc tcgttcttcg
    16261 atcacactgt cggaatccat aaattccata cctaatgttt gagcaagctg acgaccaatc
    16321 gtacttttac ctgctcccat cggcccaatc aaaaaaatat tacgtttttc agccattatt
    16381 tcttcttcat tttaaaattt actaaacatt tgat
//
LOCUS       DANLRW010000054        16130 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.054, whole genome shotgun sequence.
ACCESSION   DANLRW010000054 DANLRW010000000
VERSION     DANLRW010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16130
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.054"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..641)
                     /locus_tag="PXA71_001439"
     CDS             complement(<1..641)
                     /locus_tag="PXA71_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5105547.1"
                     /translation="MSQDIQADLKKILALLSRNRRFQSLFLLLLRSEQFINSDALSTE
                     LQLSVRTVKKEIKLLKEKLEPYGIQIFSRPFYGYKLLIQFEELHTQLKQYFQISQPMT
                     VNNKFESRVNAILRRLLVSQRALKVEDFQSELYLSFTSALTKEFSQVKALLGKYGLIL
                     EAKPYHGMNIVGESYRKIMLTVRLYKYFTQLEHPFGIKEFEQCFACPMTEKIR"
     gene            complement(949..2169)
                     /gene="agp"
                     /locus_tag="PXA71_001440"
                     /pseudo
     CDS             complement(949..2169)
                     /gene="agp"
                     /locus_tag="PXA71_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628146.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glucose-1-phosphatase/inositol
                     phosphatase"
     gene            complement(2259..3296)
                     /locus_tag="PXA71_001441"
     CDS             complement(2259..3296)
                     /locus_tag="PXA71_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HDL5105548.1"
                     /translation="MDSVYDIIRLEQGRYLFRQQPAQSVQIFFLDNPDSKDSKWLAET
                     DLAEFELKLSACEARPFFLIQSANGEQIVAERTLPVAGMNNFRDMGGYVAHQGKRVKW
                     GKLYRSDHLHNLRDEGVAYLDKLGIQTVIDYRSPNEVAKYPNPPINGREQTFRLDPNA
                     HTAELAAQFSADKHDEDRNLVNKIIAQKAEGNLINRYDIVMAQYRNFVEKAECQTAFA
                     EMLRLATDPENAPLVQHCRGGKDRTGFGAMLLLGILGVSKADIIADYMLTHYNRLARN
                     EEKMAIYRTFTQDQDVLDYLLSLIDTQPEFIEQSLNTIETQYGTIEQYAQRVLGITAK
                     EIEALRANYLA"
     gene            complement(3296..4102)
                     /locus_tag="PXA71_001442"
     CDS             complement(3296..4102)
                     /locus_tag="PXA71_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HDL5105549.1"
                     /translation="MSNKITKQDLNKVFWRMQVLNVTNNFQSMQAIGFLSSFIPVLKR
                     LYKDRPQEERAEAMKRHLKFFNSHVNSDALILGIAAAVEETTKEDEKETVTAIKTGLM
                     GPLAGLGDSLLKFTWLPICGSIGAALALSGNVLGPILMFLLYNSVNIATKYYGIHLGY
                     SKGVDLIHGAGNNILQRLGNMANVVGLMVIGALIASVVKVKVVSQIAAGDNVIKFQEM
                     LDKVMPGLLSLLLTVVIYWILKKTNGKYAATMILATMGICIGLVYAGILG"
     gene            complement(4099..4866)
                     /locus_tag="PXA71_001443"
     CDS             complement(4099..4866)
                     /locus_tag="PXA71_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDL5105550.1"
                     /translation="MLTALLVACWAGICALDDIGTQMIRRPLLIAPVVGLIMGDLETA
                     LIIGATLEVMWMGIGNVGAYSAPDMISGTAIGTALGIAAGEASTAVALAVPTSLLAQQ
                     LLILYRSGVCALNPIAERWAASGDFDKIFRIHYIPMLIAFSIRAIPTFLAVYYGADII
                     AQAVSALPAKVITGLNVAGKIIPAIGIGLLMLMMIKKAELWTFLIAGFTLAVYLKLSV
                     LPITLIALPLALIYDLAVSKKAEAAPTKTADEEDYDL"
     gene            complement(4869..5336)
                     /locus_tag="PXA71_001444"
     CDS             complement(4869..5336)
                     /locus_tag="PXA71_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5105551.1"
                     /translation="MICFSRIDDRLIHGQVVTTWVNLHRIEQIIVLNDAVAADPTQKQ
                     ILTMAAPQGIKVVAFGIEKFGEVLQKTQITRRTMLLFTNSIDVLRTVELGVSIDKLNV
                     GGMRYQARREQLSKAVSVTPEERQAFKTLLEKGVEVTVQMVPNDEKLNLQEII"
     gene            complement(5323..5754)
                     /locus_tag="PXA71_001445"
     CDS             complement(5323..5754)
                     /locus_tag="PXA71_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5105552.1"
                     /translation="MSNQIALLLMSHGSFARAALASAELIVGQQENVAAIGVVAVDNV
                     ADIKRQMEQTIAELNTDKGLIILTDIVGGTPMNLASSQLTHPNVFACSGLNLPLLLEV
                     LMSRDGNLQEIRENLPLAYQNGFSLRTQQDFVSQEDDDDLL"
     gene            complement(5938..7122)
                     /locus_tag="PXA71_001446"
     CDS             complement(5938..7122)
                     /locus_tag="PXA71_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HDL5105553.1"
                     /translation="MTSSNTIKQLDKDYIAQTYGRFDLALSHGKGCEVWDFEGNKYLD
                     FTSGIGVNSLGWADEDWLQAVTTQAGKLAHTSNLFFTEPASQLAQKLVAASGLKRAFF
                     CNSGAEANEGAIKTARKYSFDKYGSGRSTVLTLVNSFHGRTISTLASTGQEVFHKHFF
                     PFTEGFEYLPVNGIEALKARLETENVCGILLEVVQGEGGVCPLEADYLHAVQSLCQEK
                     DILFMIDEVQTGIGRTGTLFAYQQFDLTPGLVTLAKGLGGGLPIGAFLLGEKVEMTLG
                     KSDHGSTFGGNPVSCAAANVVIDKINAEFLAQVQQKGQLLQQRLASLPKVKSVSGLGL
                     MLGVEFEEGILAADIVAKCINKGVLFLTAKSKLRLLPPLMISEQQIEQGIRVLEDVLK
                     DS"
     gene            complement(7135..7989)
                     /gene="argB"
                     /locus_tag="PXA71_001447"
     CDS             complement(7135..7989)
                     /gene="argB"
                     /locus_tag="PXA71_001447"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HDL5105554.1"
                     /translation="MQQQEINQFANLLEKSTACLVKWQGKIIVVKYGGNAMINEELKK
                     SVMADLLLLHRLGVKVVLVHGGGLEISQGVKLLGKEPQFINGLRVTDSDTINVVLQML
                     AGKVNKSLVALLKGKGIGLCGIDGAMLQCKKLEAEVDYGFVGDIVKVDPTVIEIALNA
                     GLIPVVSTVGVDENGQAYNINADTAASEIAIALQAEKLVSMTDIAGLLRDRFDESTLI
                     PEVEVSEVQSLIEQGIIAGGMIPKIACCTDFIRAGGSEANIIDGRIDHAILVEMFGGK
                     NGTRFYKK"
     gene            complement(8081..9022)
                     /gene="argC"
                     /locus_tag="PXA71_001448"
     CDS             complement(8081..9022)
                     /gene="argC"
                     /locus_tag="PXA71_001448"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HDL5105555.1"
                     /translation="MSKYKIFVDGAVGTTGLRIHERLSQADDIELLTLPEEQRKDLNA
                     RVAKVAEADLTFLCLPDEASKELVANAPENTRICDTSTAHRVNPNWVYGFPELSGQRE
                     KIQNAKRVAVPGCHATGYIALVRPLVEKGILPADYPLSCHSLTGYSGGGKAMIADYEN
                     ENSPNAFNAPRVYGLTLQHKHLPEMQAVTQMQNPPIFTPVVADYYSGMLVTVPLQIFA
                     LQAVKSGEEIANLLADYYQTSRLIHVHPFQSLPEDGMLAANAYAGKDSLEIFIYGNST
                     QLLLAARFDNLGKGASGAAVQCMNIMLGRDEVEGLEL"
     gene            complement(9165..9782)
                     /locus_tag="PXA71_001449"
     CDS             complement(9165..9782)
                     /locus_tag="PXA71_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HDL5105556.1"
                     /translation="MITLHYLNSSCSHRIVWLLEALGLDYELKIYHREESGFAPMEVK
                     ALHPLGKAPVLQDGDLVLAEGNAIIQHLIARYAEGKFEPTRGSEAYSMYHYWLSISAS
                     LFSANLVTMLANRSDLGAFGDYAKAQTPLYFNHIEQTLSDKKWIVGDELTGADFSLCF
                     PLQWGRNFVEMANYPNIARYLEQVENHPAYQKANQKALKLDMNRF"
     gene            complement(9866..10990)
                     /locus_tag="PXA71_001450"
     CDS             complement(9866..10990)
                     /locus_tag="PXA71_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDL5105557.1"
                     /translation="MINLFTPYTLNNDVEIKNRLVVAPMTHSASNDDGTISEQERHFL
                     HNRAADMGLFITAATGVMRNGKAFYGQPEALDERYLASLTETANILKNQGTKAILQIF
                     HGGAQAIPALLDGANAVAPSEHANGAKALTADEVKQMIQAFANATDLAIQAGFDGVEI
                     HGANGYLIQQFFSTEFNQRTDEWGGSLEKRLRFPLAVVEAAVSVREKHQRPDFIIGYR
                     FSPEEPGEHGLTMTDTYALIDALCEKPLQYLHISLWDFGKKARRGADTNFTRMQLVHQ
                     HINGRLPLIGVGNLLTGEQIRKAYATGWAEFIALGKAVMLNPNVATLLKDNRDSEIVS
                     ELDPQQADHYGIPDRLWGYCVQGGAWLPPLKGQNGQPMDI"
     gene            complement(11054..11734)
                     /locus_tag="PXA71_001451"
     CDS             complement(11054..11734)
                     /locus_tag="PXA71_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HDL5105558.1"
                     /translation="MKMLDFETTVKTRQSIRKFLPLPMTETEIKQILADAQNAPSACN
                     TQPWLVHVASGETLARLKARFKKTFEAGINDADFEFNQTKFTGDYEPRWRNQYSHVFT
                     TSYGIPREDKAGRQVVYDDNIVGYGAPHMAFLFMPSIDGHDVNIASDVGMYSQTFLLS
                     LTARGFGGIPQLALAMFAKDVREELGIPEHYKLLHAISFGHPDWDAMQNKHHLGRVPV
                     EESATLHW"
     gene            complement(11751..12182)
                     /locus_tag="PXA71_001452"
     CDS             complement(11751..12182)
                     /locus_tag="PXA71_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HDL5105559.1"
                     /translation="MKIFYHTSATATGGRDGRTQVDDGSIGFDLVGFQNESGKVGTNP
                     EQLFAMGYAACFDSAMNHVAPTLGIKPTKSSTTVAVGIGQKADGAFGLDLDITITVEG
                     ISAEEAKTLISKAHEVCPYSNATRGNVDVRLHVKVVSEFDL"
     gene            12297..13148
                     /locus_tag="PXA71_001453"
     CDS             12297..13148
                     /locus_tag="PXA71_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDL5105560.1"
                     /translation="MQTHRAIIESIFALAPKNELWATPISGLTVHAADRSIRFNGYIQ
                     DPSLCVVLLGERQICTNGHCQVFGNQEMMFCPVNLPIVTQTLSVAENQPYLAISLRLD
                     FDLIAKIITQLPPQKISENINQRTKWELENEIKDCLLRLLNLLNSPNHIHFLAPLILN
                     ELYFYLLQSEQGGYIRSLLSQDGNIAKIANATKILERKFADTLNMSALAEEVGMSVAG
                     FYAHFKSVTSMTPLQYQKSLRLNAAREKLQAGVSVSETAYQVGYESPSQFSREYKRQF
                     GESPKGR"
     gene            complement(13224..13943)
                     /gene="deoD"
                     /locus_tag="PXA71_001454"
     CDS             complement(13224..13943)
                     /gene="deoD"
                     /locus_tag="PXA71_001454"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDL5105561.1"
                     /translation="MATPHINAPEGAFADVVIMPGDPLRAKYIAETFLEDAKEVTNVR
                     NMLGYTGTYKGRRISVMGHGMGIPSCSIYAKELITEYGVKKIIRVGSCGAVRNDVKVR
                     DIVIGVGACTDSKVNRIRFRDNDFAAIADFDMTLAAHQAAKAKGIEARFGNLFSADLF
                     YSPDVEMFDVMEKYGILGVEMEAAGIYAVAAEYGAKALAICTVSDHIRTGEQTTSEER
                     QLTFNGMIEIALESVLIGDKQ"
     gene            complement(13964..14740)
                     /gene="deoC"
                     /locus_tag="PXA71_001455"
     CDS             complement(13964..14740)
                     /gene="deoC"
                     /locus_tag="PXA71_001455"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDL5105562.1"
                     /translation="MNLKKSAEIALSLMDLTTLNDNDTDEKVIALCQQANTKFGTPAA
                     ICIYPRFIPIARKALKQQGIEQVKIATVTNFPHGNDDIEIAVAETKAAVAYGADEVDV
                     VFPYKALIAGNEQIGFDLVKQCKAVCAANNVLLKVIIETGELKSAELIRKASEISIQA
                     GADFIKTSTGKVAVNATLESARIMLETIRDLGVADRVGFKAAGGVKTSEEAAQYLALA
                     ESILGNDWVSASHFRFGASSLLANLLATLNDEQQQAVQGY"
     gene            complement(14885..>16130)
                     /locus_tag="PXA71_001456"
     CDS             complement(14885..>16130)
                     /locus_tag="PXA71_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDL5105563.1"
                     /translation="FLGIIVLLFIAFLFSSNKRAINVRTVLGALALQVAIGALVLYVP
                     AGRDALNAMATGVSKVISYGNEGISFLFGGLVSDKMFEVFGGGGFVFAFRVLPVIIFF
                     SALISLLYYIGVMQWVIRILGGLLQKALGTSKAESMSAAANIFVGQTEAPLVVKPYIS
                     KMTESELFAIMAGGLASIAGSVMAGYAGMGVPLTYLIAASFMAAPAGLLFAKIMVPQT
                     EKFRDELEAVDLEKPANILDAAASGASSGMQLALNVGAMLIAFVALIALVNGILGGIG
                     GWFGYDTLNLGQIFGWVFKPLAWVIGVPWEEAEIAGQMIGLKLAVNEFVGYLEFAKYL
                     APESTVHLTDKTVAIITFALCGFANFSSIAILIGGIGAMAPSRRGDIARLGIKAVIAG
                     SLANLMSATIAGLFIGLGGAVL"
BASE COUNT         4604 a         3671 c         3141 g         4714 t
ORIGIN      
        1 tcacggattt tttcagtcat aggacaagca aaacactgtt caaattcttt aattccaaat
       61 ggatgttcaa gctgggtaaa atatttatat aatcgtactg tgagcattat tttacgataa
      121 ctttcaccta caatgttcat tccgtgatag ggtttcgctt cgagtatcaa tccatatttt
      181 cctaacaagg ctttaacttg actaaattct tttgttaagg cactggtaaa acttaaataa
      241 agctcactct gaaaatcttc aactttcaat gcacgctggc tcaccagtaa tcggcgtaaa
      301 atcgcattta cccgagactc aaatttatta tttaccgtca tcggctgtga tatttggaaa
      361 tactgtttta gttgcgtgtg taattcttca aactgaatca ataatttata gccataaaac
      421 ggtcgagaaa aaatctgaat gccgtaaggt tcaagttttt cttttaataa cttaatctct
      481 ttttttaccg ttcgtactga aagctgtaac tccgtagaaa gtgcatcact attaataaat
      541 tgttcacttc ttaacagtaa taaaaataat gattgaaatc gacggttacg gcttaatagt
      601 gccaatatct tttttaaatc ggcttgaata tcttgcgaca taatattccc ttatgtgtgt
      661 cagaattaaa taggatttcg tcagcccttt caattttaag gcttgcacga tatgtagtga
      721 attaagatat gataccgaat ttatcactag aagtcctaaa ttaggtttaa ttggagaaaa
      781 agaatgaagc gtagaaaggt gtacttttat atacaacaaa aaagctgcct ttcagcagct
      841 ttttggggat agtagcatta ctagtgctgt aaacaacatc ttacagggag cagctggcaa
      901 ctgtcccgac ttttttatgc tacctttttc actcactttg tcaaaatctc acaatgtatc
      961 agcaatgact ttttccagta actgtttaaa ttccatataa tcgcataatc catattggtc
     1021 agcttggcaa taatccaaac tcaaaatgtg atgttgcggt ggtttatcaa ggcttagtgg
     1081 aatcgcttta cgaatttggt cagtagattg atatacatat tccagtttaa ctttttgtgc
     1141 ttggctactt ttttctttcc agatttcaat aaagactttc cctcctattg gagtttgttc
     1201 atattgatgt gctaatttat aaggcttaac atttaatgca gaaagtaagg ctataatatt
     1261 ggaatcgtgt ccgactaaaa gtgttatttt attttcacta tttaaatctt gctgaatata
     1321 ttttaatagc ggtaatgaaa tatgtttagc aataaatgga tctcctcgta gcataaattg
     1381 gtaatcgttt ttaattttat tgagtgtttg ccatttctga tcactatcaa gctggttatt
     1441 tgcaatctct tttaaaggaa aaccttcata atattgcagc aataaggcat cgacaatatt
     1501 tttacttaat cgcatcgtac cggaaacacc tggttattta tcctttttaa tccttaattt
     1561 accaacatca ttaaaaaatt cacactgttt ttcctgcaaa catttttctg aatgagcata
     1621 atcgattatt tcgcttaata aatgatagga tggcgctaaa tactgatggg ttttattgag
     1681 gtcaattttg cttaatgctg tttgcacaaa tgtctggtca tcggagcgaa taattggatt
     1741 aaacaccgga tccatctttc caatctgctg gtggtgttta acttgtacat tacaacctga
     1801 aaacccaccg gcaaccaaag cttgtgcagt gccaattgta cgttgcaggc tattagcata
     1861 aacctcaatc tgcttcccac tttcacagct tgccttgtcc aataacccat tatgtgtgag
     1921 ccattgacca agatactgcc caaaataggt ttccaacagc gtccctttat gggttaaatg
     1981 accggtcggt acactccaat ttgcccattt ataaggggtt gatttttcta aatcactgcc
     2041 tttttctgta agaggggaac gtaacccgtg tcggctaaat ataatgattt tttctaattc
     2101 gtagtgggaa gttggtatat tttcaattgg ttgagcaaaa agaggaaatg ctgtgaaaat
     2161 tgttgtcaga caagcggtag ttttatacca atgttttgca aaataacgca tatgaaattt
     2221 ctccatttgt agtgtgttca atattacacc ctaccgttct acgccaaata atttgcccgt
     2281 aatgcttcaa tttccttcgc agtaatacct aatacccttt gggcatattg ctcaatagta
     2341 ccatattggg tttcaatagt attaagcgat tgttcgataa attcgggttg agtatcgatt
     2401 aaagacaata ggtagtccaa cacatcttga tcttgagtga aggtacggta aatcgccatt
     2461 ttctcttcgt tacgagcaag gcggttataa tgagtaagca tataatcagc aataatatca
     2521 gctttactca cgcctaaaat accaagcagt aacattgcac cgaaaccagt gcgatctttc
     2581 cctccacggc agtgttgaac caatggtgca ttttcagggt ctgtcgccaa ccttaacatt
     2641 tcagcaaagg cggtttggca ttctgctttt tcgacaaaat tacgatattg tgccattaca
     2701 atgtcgtagc gattgataag attaccttca gctttttgag caatgatttt attgaccaaa
     2761 ttacgatctt catcgtgctt gtctgcacta aattgggcag caagctcggc agtatgtgca
     2821 ttcggatcaa gccgaaaagt ttgctctctg ccattaattg ggggatttgg gtatttggcg
     2881 acttcattcg ggctgcgata gtcaataaca gtctgaattc ccaatttatc aagataagcc
     2941 acgccttcgt ctcttaaatt atgcagatga tcggagcggt ataacttgcc ccatttcact
     3001 cgcttgccct gatgagcgac atagcccccc atatcccgaa aattattcat tccggcaaca
     3061 ggtaaggtgc gttcagcaac aatctgttct ccgtttgctg attgaatgag gaagaacgga
     3121 cgggcttcac aagcgctcaa tttcagctca aactctgcca aatcagtctc cgccagccat
     3181 ttgctatcct tactgtcagg gttgtccaga aagaaaatct gtaccgattg agccggctgt
     3241 tggcggaaca ggtatctgcc ctgttccaac cgaataatgt catacacact gtccattagc
     3301 cgagtattcc tgcatagact aagccgatac agatccccat cgtagcaagg atcatcgttg
     3361 cagcatattt gccgttagtt ttcttcaaaa tccagtagat cacgacagtt aaaagtaagc
     3421 tgagtagtcc cggcatcact ttatctaaca tctcttggaa tttaatcaca ttatcaccag
     3481 cggcaatttg tgaaactact ttgactttca caacggaggc aattaatgcg ccaatcacca
     3541 ttaaaccaac cacatttgcc atattgccga gtcgttgcaa aatgttatta cccgcaccgt
     3601 gaattaaatc aacccctttg ctgtaaccta gatggatacc gtaatacttc gtcgcaatgt
     3661 ttacactgtt atacaacaag aacattaaaa tcgggcctaa cacattgcca cttagtgcca
     3721 atgccgcccc gatactaccg caaatcggta accaggtgaa tttcaacaag ctgtctccca
     3781 gccctgctaa cggccccatt aaaccggttt taatcgcggt tactgtctct ttttcatcct
     3841 ctttggtagt ctcttctacc gcagcggcaa ttcctaaaat caatgcatca gaattaacgt
     3901 ggctgttaaa aaattttaag tggcgtttca ttgcttccgc tcgttcttcc tgtggacgat
     3961 ctttataaag tcgttttaat accggaataa agctacttaa aaatccaatc gcctgcatcg
     4021 attggaagtt gtttgtgacg ttcagcacct gcatccgcca aaacactttg tttaaatctt
     4081 gtttggtaat tttattgctc ataggtcata atcctcttca tctgcggttt tggttggtgc
     4141 agcttcagct tttttgctta ctgctaagtc gtaaatcaac gcaagcggta gtgcaattaa
     4201 ggtaatcggc aatactgata atttgagata aaccgccaac gtaaagccag caattaagaa
     4261 cgtccaaagt tcggctttct taatcatcat taacatcagc aaaccgatac cgatggcagg
     4321 aataattttg cctgcaacat ttaatccggt aatcactttt gccggcagag cagagaccgc
     4381 ttgggcaata atgtccgccc cgtaatagac ggctaagaac gttggaatag cacgaataga
     4441 aaaggcaatt aacattggga tatagtgaat gcggaaaatc ttgtcaaaat caccgcttgc
     4501 cgcccagcgt tcagcaattg ggttcaatgc acatacgccg gagcggtaaa gaatgagtaa
     4561 ctgctgtgcc aagagtgagg tcggtactgc gagtgcaacc gcagtagaag cttcaccagc
     4621 agcaatacca agtgcggtgc caatagcggt tccggaaatc atatccggtg cagaatatgc
     4681 accaacattg ccgatcccca tccacatcac ttcaagcgta gcaccaataa tcaacgccgt
     4741 ttccaaatcc cccataatca atccgaccac cggtgcgatt aacaacggac ggcggatcat
     4801 ctgtgtgcca atatcatcta aggcacaaat acctgcccag caggcaacaa gtagtgcagt
     4861 cagcatagct agataatctc ctgtaagtta agtttttcat cattcggtac catctgtacc
     4921 gttacttcaa cacccttttc caataaggtt ttaaatgctt gacgctcttc tggcgtaact
     4981 gaaaccgctt tacttaactg ctcacgccta gcttgataac gcattccgcc gacattcaat
     5041 ttgtcaatcg atacacctag ttctacagtg cgtaacacat caatgctatt ggtaaacaac
     5101 aacatagtac ggcgggtaat ttgtgtcttc tgcaacactt caccaaattt ttcaatgcca
     5161 aacgcgacca ctttaattcc ctgcggtgct gccatcgtta aaatctgttt ttgggttgga
     5221 tccgctgcca ccgcatcatt taacacaata atttgttcaa tacggtgtaa attaacccaa
     5281 gtggtgacta cttgaccgtg aattaaacgg tcatcaatac ggctaaagca gatcatcatc
     5341 gtcctcctgt gaaacaaaat cttgttgtgt gcgtaggcta aatccgtttt ggtatgcaag
     5401 cggtagattt tcccgaattt cttgcaaatt gccgtcacgg ctcatcagca cttctagcaa
     5461 taaaggtaaa ttcaaacccg aacaggcaaa aacattaggg tgggttaatt gagaagaggc
     5521 aagattcatc ggcgtaccac caacaatatc ggtgagaata atcaagcctt tgtcggtgtt
     5581 taactcagca atggtttgct ccatctgccg tttaatgtcc gctacattat ccactgctac
     5641 tacgccgata gctgccacat tttcctgctg cccgacaatc agctcggcac tcgccaacgc
     5701 cgccctcgca aaactgccgt ggctcatcaa caataacgca atttgattag acataagtca
     5761 ctccttgatt tataagtcat tctattaaat aaaatgttat acagataaac aagggaagtt
     5821 attgcacgat atatcgtaca cataagaaga aatataaagt gacaacagat taaagtaggc
     5881 tactatataa tagtaataaa aaaacagtaa gaagatattc ctactgttta taataactca
     5941 agaatctttc aagacatcct ctaacactct gattccttgt tctatctgtt gttcagagat
     6001 catcagcggt gggagtagcc ttaacttgct tttagcggtt aaaaacagca cacctttgtt
     6061 gatacatttt gcaacaatat cagcggctaa aatgccttcc tcaaattcta cgccgagcat
     6121 taaacctaag cctgaaacgg atttaacttt tggtaagctc gctaagcgtt gctgtaacaa
     6181 ctgccctttt tgttgcactt gggcgagaaa ttcggcgttt attttatcga ttactacatt
     6241 tgcagcagca caggaaacag gattgccacc aaaggttgag ccgtggtcgc ttttgcctaa
     6301 tgtcatttcc actttttcgc ctaacaggaa agcaccaatc ggcaagccgc cgcccaagcc
     6361 tttagcgagc gtgactaaac caggagttaa atcaaattgt tgataagcaa aaagtgtgcc
     6421 cgttcgccca atgccggttt gcacctcatc aatcataaat aaaatatctt tttcttggca
     6481 caggctttgc acggcgtgca gataatccgc ctctaatggg caaacaccgc cctcgccctg
     6541 caccacctcc agcaaaatcc cgcaaacgtt ctcagtttcc aagcgagctt tcagtgcctc
     6601 aatgccattt acaggtaaat attcaaagcc ctctgtaaag gggaaaaaat gcttgtggaa
     6661 tacctcttgc ccagtggatg cgagggttga aatggttcgt ccgtgaaaag agttcacgag
     6721 ggttaaaacc gttgaacgac cggaaccgta tttgtcgaaa ctatatttgc gggcggtttt
     6781 aattgctcct tcatttgcct ctgcccctga attgcaaaaa aatgcccgtt ttagaccgct
     6841 tgcagccact aatttttggg ctaattggct tgccggttcg gtaaaaaaca ggtttgaggt
     6901 gtgagctaat ttgccggctt gtgtggtaac agcttgtagc caatcctcat ccgcccagcc
     6961 taaactattt accccaatgc cactggtaaa atcaagatac ttattgccct caaaatccca
     7021 cacttcacag ccttttccgt gcgacagtgc aaggtcaaat ctgccatagg tttgggcgat
     7081 ataatcctta tctaattgct taatcgtatt actgcttgtc atttcacttt cctgttattt
     7141 tttataaaac cgtgtgccgt ttttgccacc gaacatttct accaaaatgg cgtggtcgat
     7201 tcgcccgtca ataatatttg cctcagagcc accagctctg atgaaatcgg tacagcacgc
     7261 aattttgggg atcatcccac cggcaataat gccttgctca atcagggact gcacttcgct
     7321 tacttccact tccggaatta aggtgctttc atcaaagcga tctcgcaata aacctgcaat
     7381 atcggtcatc gagaccaatt tttccgcttg taacgcaatc gcaatctcgc tggcagcggt
     7441 gtctgcatta atgttataag cctgcccgtt ttcatcaacg cccaccgtgg aaacaaccgg
     7501 aatcaagccc gcattaagag caatttcaat cacagttgga tcgactttca caatatcgcc
     7561 cacaaagccg taatccacct ctgcctctaa ttttttgcat tgcaacatcg ccccatcaat
     7621 accacacagc ccaatgcctt tcccttttaa taaggcgaca aggcttttat taactttgcc
     7681 tgccaacatt tgcaaaacca cgttaatcgt atcgctatcg gtaacacgca acccgttgat
     7741 aaattgcggt tctttaccca ataatttcac gccttgtgaa atctccagcc cgccaccgtg
     7801 taccagtacc acttttacgc ctaaacgatg aagtaacagc agatctgcca tcactgattt
     7861 tttcagttcc tcattaatca ttgcgttacc gccatatttc accacaatga ttttaccctg
     7921 ccatttcacc aaacaagcgg tggatttttc taataaattt gcaaattgat tgatttcttg
     7981 ttgttgcata tttctttctc ttgtagggac gggtcctgtg cccgtccgaa tatgggcgat
     8041 gattatcgga caggcacagg acctgtccct acatttatat ttaaagctct aacccctcaa
     8101 cctcatctct tcccaacata atattcatac actgcactgc ggcacctgat gcccctttgc
     8161 ctaaattgtc aaaacgggca gcaagtaaaa gttgggtgct gttgccgtaa ataaaaatct
     8221 ctaagctgtc tttacctgca taagcattcg cggcaagcat tccgtcttcg ggtagagatt
     8281 ggaaagggtg aacgtgaatt agtcggctgg tttggtagta atcggcgagc aaatttgcaa
     8341 tttcttcgcc ggatttgacc gcttgtaagg cgaagatctg caatggcaca gtgactaaca
     8401 ttccgctgta ataatcagca accacagggg tgaaaatcgg tgggttttgc atttgggtaa
     8461 ctgcctgcat ttcaggcaaa tgtttgtgtt ggagagttaa accgtaaaca cgaggggcat
     8521 tgaaagcatt tgggctgttt tcattttcat agtcagcaat catcgctttg ccaccgcctg
     8581 aatagccggt taaggaatga caacttaaag ggtaatcggc gggcagaatc cctttttcca
     8641 ccagtggacg aaccaacgca atatagcccg tggcatggca acccggcacc gcaacacgct
     8701 tggcattttg gattttttca cgttgtccgc tcaattccgg aaaaccataa acccaattag
     8761 gattgacccg atgagcggtt gaagtatcgc aaattcgggt attttccggt gcatttgcta
     8821 ctaattcttt tgaggcttca tccggcaaac agaggaaagt taaatccgcc tctgcgactt
     8881 ttgccacacg ggcgttcaaa tctttccgct gctcttcggg caaggttaat aattcaatat
     8941 cgtccgcttg gcttaaacgt tcgtgaatgc gtagcccggt tgttcctact gccccatcaa
     9001 caaaaatctt gtatttgctc attgaaaatc cttctttgac tttttctgct cggtagtcta
     9061 aggctattta aggctaaact caagtttatt tttgaataat tattcacatt aattgatttt
     9121 atattcaaaa atccctaaca aaatgttagg gattaaaaag agtattaaaa tctattcata
     9181 tcaagcttca gggctttttg attcgctttt tggtaagcag ggtgattttc cacctgttct
     9241 aaatagcgtg caatattcgg gtaatttgcc atttcaacaa aattacgccc ccattgtagt
     9301 gggaaacaga gagaaaaatc cgcaccggtt agttcatcac ccacaatcca ttttttatct
     9361 gaaagtgttt gctcaatatg gttaaaatac agcggagtct gcgcttttgc gtagtcgcca
     9421 aaagctccga gatcagagcg attagccaac attgtcacaa ggtttgccga gaataatgaa
     9481 gcagaaatcg acaaccagta gtgatacatt gaataggctt cgctaccacg agtcggctca
     9541 aatttccctt cggcgtaacg ggcaatcaga tgctggataa tcgcattgcc ttcggcaagc
     9601 accaaatcgc catcttgcaa cacaggggct ttgccaagtg ggtgcaaggc ttttacctcc
     9661 ataggtgcaa aaccgctctc ttcacgatgg tagattttta gctcgtaatc caagcctaag
     9721 gcttccaaca accaaacgat gcggtgagag caggaactgt tcaggtaatg taacgtaatc
     9781 ataatttttc tccttcagat aattgaaaaa atgcggtcac ttaattgcaa atttttacaa
     9841 aaaaatgacc gcttgtctgt aatgattaaa tatccattgg ttgcccgttt tgccctttaa
     9901 gcggcggtaa ccaagcacca ccttgcacgc agtagcccca tagtctatcg ggaatgccgt
     9961 agtggtcggc ttgttgcggg tcgagttcgc tgacaatctc actgtctcga ttatctttca
    10021 acaaggtcgc cacgttcggg ttgagcatta ccgctttacc taaggcgata aattctgccc
    10081 agcctgttgc ataagcttta cggatctgtt caccggttaa taagttaccc acgccgatca
    10141 gcggtaaacg cccgttgatg tgttggtgta ccagttgcat acgggtgaag ttggtatctg
    10201 caccacggcg ggcttttttg ccgaaatccc agagtgaaat gtgcaagtat tgcaacggct
    10261 tttcgcacaa agcatcaatc agggcgtagg tatcggtcat ggttaagccg tgttcgcccg
    10321 gctcttccgg tgagaaacgg tagccgataa taaaatcagg gcgttggtgt ttttcacgca
    10381 cgctgaccgc tgcctcaacc accgctaacg ggaaacgcaa gcgtttttca aggctaccgc
    10441 cccattcatc agtgcgttga ttaaattcag tagagaaaaa ttgttgaatt aaatagccgt
    10501 tcgccccgtg aatttccaca ccatcaaaac cggcttgaat agctaaatcg gtggcattag
    10561 cgaaagcttg gatcatttgc ttcacttcgt ccgccgttag ggctttagca ccgttggcgt
    10621 gctcggacgg cgcaactgca ttcgccccgt caagcaaggc aggaatagct tgtgccccac
    10681 cgtggaaaat ttgcaaaatc gctttggtgc cttgattttt caagatattg gcagtttctg
    10741 tcaggcttgc caaatagcgt tcatcaagag cttccggctg accgtaaaac gctttgccgt
    10801 tacgcattac cccggttgct gcggtgataa ataagcccat atctgctgca cgattatgca
    10861 agaaatggcg ttcttgctcg ctaattgtgc cgtcatcgtt ggaggcggaa tgggtcattg
    10921 gggcaactac aaggcggttt ttaatttcta catcgttatt cagagtataa ggggtaaata
    10981 aatttatcat cgtattctcc taaaaaatac ggttgatttc gcaaattttt gcgaaaaatc
    11041 aaccgcttgt ttattaccaa tgtaaggtcg cactctcttc caccggcaca cgccctaaat
    11101 ggtgtttgtt ctgcatagcg tcccaatctg ggtgtccgaa agaaatggcg tggaggagct
    11161 tgtaatgttc aggaatgcct aactcttcac gcacatcttt agcaaacatc gcaagggcaa
    11221 gctgcggaat gccgccaaaa ccacgagcgg tgagtgagag caagaaagtt tgcgaataca
    11281 taccaacatc gctggcaata ttgacatcgt gtccgtcaat gcttggcata aataggaatg
    11341 ccatatgtgg cgcaccataa ccgacaatat tgtcatcata caccacttgg cgaccggctt
    11401 tatcttcacg gggaatgcca tagctggtgg taaaaacgtg gctgtattgg ttacgccaac
    11461 gtggttcgta gtcaccggta aatttcgttt gattgaactc aaaatccgca tcattaatgc
    11521 ccgcttcaaa agtcttttta aaacgagctt ttaagcgtgc tagcgtttca ccagaggcaa
    11581 cgtgtactaa ccacggctgt gtattacaag ccgaaggggc attttgtgca tcggcaagaa
    11641 tttgtttgat ttcagtttcc gtcatcggaa gcggtaaaaa cttgcggatt gattgtcgtg
    11701 tttttaccgt ggtttcaaaa tctaacattt tcatttcccc tatttatttt ttataagtca
    11761 aattcactca cgactttaac gtgtaaacgc acatctacat taccacgggt tgcatttgaa
    11821 tatgggcaaa cttcgtgtgc cttgctaatt aaagttttcg cttcttccgc actaatgcct
    11881 tccacagtaa tggtaatatc taaatctaag ccgaaagcac catcagcttt ttgaccaatc
    11941 ccaactgcaa cagtggtact ggatttggtt ggcttaatgc ctaaggttgg ggcaacgtga
    12001 ttcattgcac tgtcaaagca ggcagcatag cccattgcga ataattgttc cggattagtg
    12061 cctactttgc cactttcatt ttggaaaccg actaaatcaa aaccgataga accgtcatcc
    12121 acttgggttc tgccgtcacg accaccggtt gcagttgctg atgtgtgata aaaaattttc
    12181 atattttgct cctattaaat gctttatttg attggggata ttatccgctt tttgctattt
    12241 gtcgtcttgc ctgattttct ataaaatatg cctaattttc taaaagtgag attattatgc
    12301 aaactcatcg agctattatt gaatctattt ttgccctcgc tccgaaaaat gaactttggg
    12361 ctactcccat ttcagggcta accgttcacg ctgccgatcg ttctattaga tttaacggtt
    12421 atatccaaga cccaagttta tgtgtagtat tattaggcga gcggcaaatc tgtaccaatg
    12481 gacattgcca agtcttcggt aatcaggaaa tgatgttttg ccctgtgaat ttgccgattg
    12541 ttacccaaac cttatcagtt gcagaaaatc agccttatct tgcgatttca ctacgcttgg
    12601 attttgatct tattgccaaa attatcacgc agcttccccc acagaaaata agtgaaaaca
    12661 ttaatcaacg cactaaatgg gagctggaga atgaaattaa agactgtttg ttacgcttac
    12721 taaatttgct taattctcca aatcatattc attttcttgc accattgata ttaaacgaac
    12781 tctatttcta tttattacaa tctgagcaag gtggctatat acgctctcta ctctctcaag
    12841 atggcaatat tgctaaaatt gccaatgcaa caaaaatctt agaaagaaaa tttgccgata
    12901 cactaaatat gtcagcactg gctgaagagg taggaatgag cgtggcgggg ttttacgctc
    12961 attttaaaag cgtaacttca atgacaccac tgcaatatca gaaatcgtta agactaaatg
    13021 cggcaaggga aaaactacaa gcaggagtaa gcgtgagtga aaccgcctat caagtcggct
    13081 atgaaagccc aagccagttt agtcgagaat ataaaaggca gtttggcgaa agcccgaaag
    13141 gaagataaag gaagaatcaa aaataacaag cggtcaaatt ctgcaaattt tttgcaaaat
    13201 ttcaccgctt gtcaggttag aaattactgc ttatcgccaa ttaatactga ctctaacgca
    13261 atttcaatca taccattaaa ggttaattga cgttcttcag aggtagtttg ctcaccggtg
    13321 cggatatggt ctgaaacggt gcaaattgct aatgcttttg ctccatactc tgccgctacc
    13381 gcataaatgc ctgctgcttc catttctacg cctaaaatgc cgtatttttc cattacatca
    13441 aacatttcga catcaggtga gtagaataaa tcggctgaga ataaattacc gaaacgagct
    13501 tcaatgcctt tcgctttagc tgcttggtga gcagctaatg tcatatcaaa atcagcaatc
    13561 gccgcaaaat cgttatcacg gaagcgaata cggtttactt tagaatcggt acaagcccca
    13621 acaccgatga caatatcacg cactttgaca tcattacgta ccgcaccgca cgagccgaca
    13681 cggataattt tcttcacgcc atattcagta attaattctt tagcgtaaat cgagcaagat
    13741 ggaatcccca taccgtgccc cattactgaa atgcggcgac ctttataagt gccggtgtag
    13801 cctaacatat tgcgaacatt ggtcacttct tttgcatctt ctaaaaaggt ttcagcgata
    13861 tatttagcac gaagcggatc gcccggcata attacaacgt cagcgaaagc accttcaggt
    13921 gcgttaatgt gtggagtagc cattttatgt tcctctttat taattaataa ccttgaacag
    13981 cttgctgctg ttcatcattc aatgttgcta ataaattagc taataaactt gatgcaccga
    14041 agcgaaaatg tgatgcactc acccagtcat tgcctaaaat agattccgca agtgcaagat
    14101 attgggcggc ttcttccgag gtttttaccc cacctgcagc tttaaagcca acacggtctg
    14161 ccacacctaa atcacgaatg gtttcaagca taatgcgggc agattcaagg gtagcattca
    14221 ctgccacctt gccggttgag gttttaataa aatcagcccc tgcttgaatc gaaatttcgc
    14281 ttgctttgcg aataagctct gctgatttta actcgccggt ttcaataatc actttaagca
    14341 acacattatt ggcagcacaa actgctttgc attgttttac caagtcgaaa cctatttgct
    14401 cattacctgc aattaatgct ttataaggga ataccacatc tacctcatct gccccataag
    14461 caactgcggc tttggtctca gctaccgcaa tttcaatatc atcattaccg tgagggaaat
    14521 tcgtgactgt cgcaattttt acttgctcga taccttgctg tttcaatgct ttgcgggcaa
    14581 tcgggataaa acgtggataa atgcaaattg ctgccggtgt gccaaacttg gtgttcgctt
    14641 gttggcataa tgcgatgact ttctcatcag tatcattgtc atttaatgtg gtgagatcca
    14701 tcaacgaaag agcaatctca gcggattttt ttaaattcat agtgtctcct tttattaaat
    14761 gcgtggtggt tggtaaaatt ttataaaaat ctgaccgctt gtaaatagac aaaccaaaag
    14821 caaccgttta cgtcagataa aaaaagataa aaccactatt tctagtggtt ttatacaaac
    14881 tggattagag aactgctcca cccaagccga taaacaagcc ggcaatggtt gcactcatta
    14941 agttggcaag tgagccagca atgacggctt taatcccaag tcgggcaata tcaccacgac
    15001 ggcttggagc cattgccccg ataccaccga ttaaaatcgc aatcgagctg aagttcgcaa
    15061 agccacaaag tgcaaaggta ataatcgcaa cagttttatc cgttaaatgt acggttgact
    15121 caggagctaa gtatttagca aactctaaat aacccacgaa ttcatttacc gctaatttta
    15181 agccgatcat ctgccccgca atttctgctt cttcccaagg cacaccgatt acccacgcaa
    15241 gcggtttaaa tacccagccg aaaatttgac ctaagtttaa ggtatcataa ccgaaccagc
    15301 cgccaatacc tcctaaaata ccattcacta atgcaattaa cgccacgaat gcaattaaca
    15361 ttgcccctac gtttaatgcc agttgcatac ctgaagaagc acctgaagct gctgcatcaa
    15421 gaatatttgc cggtttttct aaatctaccg cttctagttc atcacggaat ttttcggttt
    15481 gtggcaccat aattttggcg aataataacc ctgccggagc cgccataaag gaggctgcga
    15541 ttaagtacgt taatggtacg cccattcctg cgtaaccagc cataacagaa cctgcaatag
    15601 aagctaagcc ccctgccata atcgcaaaga gttcagattc tgtcattttg ctgatataag
    15661 gttttactac caatggagct tcagtttggc caacgaaaat attagctgcc gcagacatag
    15721 attccgcttt agatgtacct aatgcttttt gtaataaacc acctaaaata cggattaccc
    15781 attgcatcac tccaatgtag taaagcaaag aaatgagtgc agagaagaaa ataatcaccg
    15841 gaagtacacg gaaagcgaac acaaagccgc cgccgccaaa tacttcaaac attttgtcgc
    15901 tgactaagcc accgaataaa aatgaaatcc cttcattacc gtaagaaatc acttttgaca
    15961 cacctgttgc catcgcattc aaggcatcac gccctgccgg cacataaagc accaatgcac
    16021 caatagctac ctgcaatgct aatgcgccta atacggtacg cacgtttatt gcacgtttat
    16081 tgctcgaaaa taaaaatgca atgaatagta aaacaataat gcctaaaaag
//
LOCUS       DANLRW010000055        16038 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.055, whole genome shotgun sequence.
ACCESSION   DANLRW010000055 DANLRW010000000
VERSION     DANLRW010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 16038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16038
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.055"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(368..1402)
                     /locus_tag="PXA71_001457"
     CDS             complement(368..1402)
                     /locus_tag="PXA71_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5105564.1"
                     /translation="MKTVIADNSAEFVNEISQLIQSSKQRMTVAVNAELTLLYWHIGK
                     RINDYILQGERAEYGQEVVKNLAQSLTEQFGKGWSKRHLNYTMQFATTFPNLEIVHAL
                     RAQLSWTHFKQIIHIDDPTKRGFYATMAAQERWSTRTLEDRIGSLLFERTAISKKPDE
                     TIIAELSLLREKGEYNQSMVLKDPYILDFLDLNDRYMERDLEDAILREIEQFLLELGA
                     GFTFVARQKRIQIDNDDFYIDLLFYNRKLKRLIAIELKTESFKHSHKSQMELYLAWLA
                     KYEQEADENPPLGMILCTGKKQEQVELLDLKNSDIHIAEYMTVLPSKAVLEQRLHLAV
                     ERAKERFLLK"
     gene            complement(1445..1705)
                     /locus_tag="PXA71_001458"
     CDS             complement(1445..1705)
                     /locus_tag="PXA71_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105565.1"
                     /translation="MKPILYFADWCPDTAPFVAELDRLGIEYEPCDITKGGSTLKPFL
                     KLRDTHSAFDHAKANGYIGIPALLIEGEKVVLDLAELEGIFG"
     gene            complement(1785..2693)
                     /gene="glyQ"
                     /locus_tag="PXA71_001459"
     CDS             complement(1785..2693)
                     /gene="glyQ"
                     /locus_tag="PXA71_001459"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HDL5105566.1"
                     /translation="MSTKFNVKTFQGMILALQDYWASKGCTIVQPFDLEVGAGTSHPM
                     TCLRALGPEPMAFAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLDS
                     LKMLGFDPTQNDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPV
                     TGEITYGLERLAMYIQGVDSVYDLVWSDGELGKTTYGDVFHQNEVEQSTYNFEYADVD
                     FLFQCFEQYEKEAQYLLGLEKPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILR
                     IRALTKGVAEAYYASREALGFPGCKK"
     gene            2888..3499
                     /locus_tag="PXA71_001460"
     CDS             2888..3499
                     /locus_tag="PXA71_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentahemic C cytochrome"
                     /protein_id="HDL5105567.1"
                     /translation="MKSLSKIAFCFLAFIMPTFCFAGSNSYTTETIPLFADENLTQKI
                     GQLEAGAEIKLVQTTAKAAEIELNLWRKSKGFGRIWYHSFSKNITDAVFEKSFISNNP
                     LLEIVESKEDPNTGLVWQKVKMNVWVENAEFTQDLTNFWANTKNTYKTECSVCHKQRD
                     PKMHDANEWIAVFNGMVGFTDMDEATQKKVLRYLQMNAASSSQ"
     gene            complement(3583..4200)
                     /locus_tag="PXA71_001461"
     CDS             complement(3583..4200)
                     /locus_tag="PXA71_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5105568.1"
                     /translation="MILVCGANGLLGRAICDKLPREKTIAVLRKDAMDTFFSERNIAV
                     EIADLLDLESCNALLQKTQPEILITVVGGKNEQGIRSDKTANINLIKAVEKYSPTTKV
                     VLVTSVGCAEQWDLISPLAQQALGEALKAKTEAEAYLQQTALNWLIIRPGGLNNDEVN
                     DEYQIVRDLPNERKMYVSRKSVATGIVRLLDSTENHQIFSIINRG"
     gene            complement(4203..6020)
                     /locus_tag="PXA71_001462"
     CDS             complement(4203..6020)
                     /locus_tag="PXA71_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme anaerobic degradation radical SAM
                     methyltransferase ChuW/HutW"
                     /protein_id="HDL5105569.1"
                     /translation="MIIKDTHWTSQQASPNAFPERQALMPIWGGKNIERNQWQSLWLE
                     QAPNALLQDGLAYFHIPFCASHCIFCGFYRNAWKENYSQIYTDRVISELRYESSLWRG
                     QGKIHAVYFGGGTPTALHTEDLVRLIRACYRYLPLAEDCEFTIEGRISHFDIDKAKAC
                     IEAGVNRISIGIQTFNSEIRKRLGRKHSGEEAQTYLKALSELNAVIVADLIFGLPNQT
                     DDIWQNDIEIATSLPISGLDIYAFNNYPFLPINRLIEHGKLPAPAGFDTQSLHYAYAV
                     EKLKAQGWQQVSNNHFAFPNRGERNRYNTLVKSNMPCLAFGSGAGGNFGGLSYQVQSD
                     LKTYLDSPLDQKSLSFLSKHGEHKALLGVIQHSMELGYLDTTPFEQNAKAEKLLQQWE
                     ALDLLKREKNQVYLNTSGRYWSPTLIRKLMLTLPQSSKDNNMITPLTKELENKLRTNL
                     KENPGQILEMLAGMNQCSLESVINCLPKEMVMQTGGERFVEIMQAIAGWNEAVTFIIH
                     TPDAIAEVTAKLPQGKIGRGFYNFEHGVDGGIHGHLRYENCAAIYLLDRPFMGKRTVA
                     LTFINQSGEAMFKIFVGRDEQGQLRENQIQAMRKLIGGC"
     gene            complement(6177..6866)
                     /locus_tag="PXA71_001463"
     CDS             complement(6177..6866)
                     /locus_tag="PXA71_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005577085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HDL5105570.1"
                     /translation="MFMYLSHPLDPKDLAWPGEPVVEVTRCTDVGEETPFSSFITKLP
                     NHCGTHMDAPRHFVKDGLSINELPIEYFCHKEVALIEIPKGEAEGITKEDLLPYVDIL
                     SKVSFAFLRTGFEKYRTENPAIYQNECPYISTGAGQYLSDTFPNLKGVGIDFLALGSP
                     SSRVPDAENPKNCHRAILGYYTGRFTTVIEDMHLAELPKNANIKQFFNAPWRIKGLDS
                     SQVTCIVELQQ"
     gene            complement(6878..8218)
                     /locus_tag="PXA71_001464"
     CDS             complement(6878..8218)
                     /locus_tag="PXA71_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase"
                     /protein_id="HDL5105571.1"
                     /translation="MLKKTLLFTLLLSHSLYAEDMIQENKSANITLLAEITAQGQKIN
                     GVALEYPDNVLSGSDLRQLYQVKTALDSAEKENRSVLKAYVNNEPKVTALPQAGKFVI
                     IELDTADKNAATYSVKDANKAPMKFKSKDENGNIVETEKVQAVKIPEFFANRLIYSVE
                     QKGLLKLTSGTTLGKTEWTQTAEPDKIKTPYLDDFVAKQVSLDQSGNKLNYRLYSPLQ
                     KNGEKYPLVIFLHGSGQVGSDNLAHLLSSKGAIATLPYAPSFVLAPQYDQVFDPFDNA
                     AKGQKGGIHWQTENRINLVLKMIDETLKANPQIDTTRIYINGLSRGAEGGLNLLLARP
                     NFFAGALLMSGREAYTNEWVDGNATKTNLAAIKHIPIWFFHSKEDKVSPVKGSRINYR
                     ILKDELNAPNVKYTEFTFEQAGDNGIVNNNPHNTWDAVYNSPEVIGWLLQQKRH"
     gene            complement(8280..9638)
                     /locus_tag="PXA71_001465"
     CDS             complement(8280..9638)
                     /locus_tag="PXA71_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntT protein"
                     /protein_id="HDL5105572.1"
                     /translation="MSNEMLILIGLASVVALLVIMIKGKVHPFLALGLVSIAVALTAG
                     IPMSKVIPTLISGMGSTLGSVALIVGLGAMLGKIIEKSHGADVLANWLLQRFGEKNAP
                     FALGMTGFIFGIPVFVDVGFIVLLPIIFSVARRLGGNILVYSLPIGLAMLLVHVLVPP
                     HPGIVAGAQNLNADIGFVLGIGLVAALPAYLIGQKFIPFFTKNNFVKVVTSIDLLQHQ
                     KDLIKEKGIELPSFGKVLAMISFPLILIMLGTVTATTLPKEHIVREVFSMVGSSPFAL
                     FVAVCLSAYVLGFRYGWTKHKLEEVLESALAPIAGIILITGAGGMFGKVLDASGVGKA
                     LADVLANTGLPLLVLSFILSALLRAAQGSATVATITTTTILAPAAVAAGYNDLQLALL
                     TAAIGAGSMTLSHVNDSLFWVWTKFFNVPVSVGLRTWTFLTTIFGVIAFAVVGIIWML
                     FV"
     gene            complement(9691..10467)
                     /locus_tag="PXA71_001466"
     CDS             complement(9691..10467)
                     /locus_tag="PXA71_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005547735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase family protein"
                     /protein_id="HDL5105573.1"
                     /translation="MPKFAANLTMMFNEVPFLDRFEAAANAGFKYVEYLWPYDYPAAE
                     LKAKLEQYGLKQVLFNTAAGDVAQGEWGVSAIPGREADSHRDIDLALEYALALGCENV
                     HVMAAVVPEGEDREAYKQTFIKNVQYAADKFKPHGINVLLEALSPEVKPNYLLKSQFD
                     TLEIVEAVNRDNVFVQLDYFHAQNVDGNLSRLTDKLKGKFAHIQIASVPDRHEPDEGE
                     INYQYIFNKLDEIGYEGYVGCEYKPRAETTSGLGWFEQYK"
     gene            complement(10469..11101)
                     /locus_tag="PXA71_001467"
     CDS             complement(10469..11101)
                     /locus_tag="PXA71_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HDL5105574.1"
                     /translation="MTEQEQKIEMVNLARSLFERGYTVGGAGNLSVRLDENRILVTPT
                     GSSLGRLEADRLSVLDMQGNVLSGDKPSKESVFHLAMYQKNPACQAIVHLHSTYLTAL
                     SCLENLDTDNAMRAFTPYYVMRVGKLPVIPYYRPGDINIARELGERALDGKAFLLANH
                     GVVVTGSDLRDAVDNTEELEETSKLYFILQGQKVRYLTDDEVNDLKNRGK"
     gene            complement(11098..12339)
                     /locus_tag="PXA71_001468"
     CDS             complement(11098..12339)
                     /locus_tag="PXA71_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005754893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL5105575.1"
                     /translation="MLGIIADDFTGASDIASFLTENGLKTVQMNGVPKTTLNSQVDAI
                     VISLKSRSNPVEEAIQQSLQALDWLKQNGCSQFYFKYCSTFDSTEKGNIGPVTDALMA
                     ALDTDFTVVTPALPVNGRTIFNGYLFVGDVLLNESGMRNHPITPMKDANLVRLMDAQS
                     QGKTGLVAYADVIQGAERVKARFAELKQQGYKYAVVDAADNSQLAVLAEAVADFQLVT
                     GGSGLGAYMAAYRSGGKKGTNAFVPSKGKTVVLSGSCSVMTNTQVAAYQQKAPSYFLE
                     AEKAIQDPNYVETLYQWVIANLDGDFAPMVYATVPPEKLKEIQTQFGGDKASHAIENT
                     FAKLAEKLQAAGVTNFITAGGETSSIVVQQLGFSGFHIGKQIAPGVPWLQAVEKPIFL
                     ALKSGNFGKEDFFSFAQEMFV"
     gene            complement(12341..13246)
                     /locus_tag="PXA71_001469"
     CDS             complement(12341..13246)
                     /locus_tag="PXA71_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL5105576.1"
                     /translation="MSQKYSVAVIGLGAMGMGAAKSCIAAGLDTYGVDLNPNYLETLK
                     AAGAKKVGTSAVDFAAELDAVLLLVVNANQVNAVLFGENGLAQHLKQGTVVMVSSTIS
                     AQDAKNISQKLTDLGLVMLDAPVSGGAAKAAQGEMTVMASGSSEAFEKLKPVLDAVAG
                     KVYNIGEEVGLGATVKIIHQLLAGVHIAAGAEAMALAARAGIPLDLMYDVVTNAAGNS
                     WMFENRMKHVVEGDYTPLSMVDIFVKDLGLVNDTAKSLRFPLHLASTAYSMFTEASNA
                     GYGKEDDSAVIKIFSGIELPKKEGK"
     gene            13420..14178
                     /locus_tag="PXA71_001470"
     CDS             13420..14178
                     /locus_tag="PXA71_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDL5105577.1"
                     /translation="MIPLERQREILRLINNNGVASINFLAEQLKVSHMTIRRDIQKLE
                     EQGKVSLVSGGVQSLERLIMELPHDDKSMLFQEQKSAIGSLASQLIPSNTTIYLDAGT
                     TTLEIAHRIIDRNDLLVVTNDFVIAHYLSNSGKCDLIHIGGSVCKENLSTTGSLAAEF
                     LKNLSIDMAFISTSSWNLKGLTTPNENKIPVKKAILEASKQNILVTDSSKYGKVATFF
                     VCPLTVFDQIICDKGLFENVRDALKGLSIKLDLG"
     gene            complement(14318..15709)
                     /gene="ffh"
                     /locus_tag="PXA71_001471"
     CDS             complement(14318..15709)
                     /gene="ffh"
                     /locus_tag="PXA71_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDL5105578.1"
                     /translation="MFENLSDRLSKTLRNITGKGRLTEDNIKDTLREVRMALLEADVA
                     LPVVRDFINKVKERALGVEVNKSLTPGQEFLKIVQSELETAMGEANEELNLAAQPPAV
                     ILMAGLQGAGKTTSVGKLAKFLKERHKKKVLVVSADVYRPAAIKQLQTLAEALKVDFF
                     PTETSQKPVAIAEAALKHAKLNFFDVLIVDTAGRLHVDGEMMEEIQQIHAVLNPIETL
                     FTVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRQITGKPIKFLGVG
                     EKTDALEPFHPDRVASRILGMGDVMSLIEDIQRSVDQEKAEKIAAKFKKGDEFTLEDF
                     REQLIEMKKMGGMMSMLDKLPGAKNLPDHVKSQVDDKMFMKMEAIINSMTLKERANPD
                     IIKGSRRRRIALGSGTQVQDVNKLLKQFDDMQRMMKKMRKGGMAKMMRGVKGMMGGGL
                     GGLGGLGSMFGKR"
BASE COUNT         4573 a         3563 c         3124 g         4778 t
ORIGIN      
        1 tattatatcc ttttctttgc ttttattgta cttatcaaga aatgagagca actttatgat
       61 taacttgcaa aaaagtacta gactaatcaa tctctcacta cgttttcact tctgccaaat
      121 ctcccctagc ccctctttgc taaaaagggg aatttgatct tcgtaaattt ataattcatc
      181 tttcttcatt aagattgtaa atagtcagat gaattaaaat tactcactaa atgatcgccc
      241 cctctttagc caaagagggg gaggggggag atttgaaaat ctctaaccac ccaccaacgg
      301 aatatgcaac caaatcgttt ccatcatact ttcattttgc aacatttccg ctgattttaa
      361 ccgcttgcta ttttagtaaa aaccgctctt tcgccctttc caccgccaaa tgcaaccgtt
      421 gttccaatac cgctttactc ggcaacacgg tcatatattc cgcaatatga atatcggaat
      481 ttttcaaatc caacaattcc acttgctcct gctttttacc ggtgcagaga atcattccaa
      541 gcggtgggtt ttcgtctgct tcttgctcgt atttcgccag ccacgccaaa tagagttcca
      601 tttgactttt gtgggaatgt ttgaagcttt cggtttttag ttcaatcgca atcaggcgtt
      661 tgagtttacg gttataaaac agcagatcga tatagaaatc atcattatca atctgaatcc
      721 ttttttggcg ggcgacaaag gtaaaacccg ccccaagttc cagtaaaaac tgttcgatct
      781 ctcgtagaat cgcatcttcg agatcacgtt ccatataacg gtcgttaagg tcgagaaaat
      841 ccaaaatata gggatctttc aacaccattg actgattata ttcgcctttt tcacgtagca
      901 aactcaattc agcaataatg gtttcatcgg gctttttgga aattgccgtg cgttcaaaca
      961 ataatgagcc aatgcgatct tctaatgtcc ttgtactcca acgctcctgt gcagccattg
     1021 ttgcatagaa ccctcgcttt gttggatcat caatatgaat aatctgctta aaatgtgtcc
     1081 agcttaattg tgcacgcagt gcgtgcacaa tttccaaatt agggaaagtt gtagcaaatt
     1141 gcattgtata atttaaatgg cgtttactcc aacctttacc aaattgctcc gtcagacttt
     1201 gagcaagatt tttcaccact tcttgcccat attccgcacg ttcaccctgc aaaatatagt
     1261 cattgatccg ttttccgata tgccaataaa gcaaggttaa ttctgcatta accgcaacgg
     1321 tcattcgttg cttactcgat tgaataagtt gtgaaatttc attcacaaat tcagccgaat
     1381 tatctgctat tactgtcttc attattggct cctttgcaac atttccgcca aattcaaccg
     1441 cttgttagcc gaaaataccc tctaattcag ccaaatccag cacgactttt tcgccttcga
     1501 tcagcaatgc cggaatgcca atatagccgt tggctttggc gtggtcaaag gcagaatgcg
     1561 tgtctcgcag tttcaaaaat ggtttaagtg ttgagcctcc tttggtgatg tcgcacggct
     1621 catattcaat gcccaagcgg tctagttctg ccacaaatgg ggcggtatcc ggacaccaat
     1681 cggcgaagta taaaatcggt ttcatcgtaa atccttgtag ggacacgatg cttcgtgtcc
     1741 gttttgtaat ttattgacgg acgccaagcg tggcgtccct acgattattt tttacacccc
     1801 gggaacccca acgcttcacg gctggcatag tacgcttcag caacgccttt ggttaaggca
     1861 cgaatgcgta gaatgtagcg ttggcgttca gttaccgaga tcgctttacg agcatctaat
     1921 aagttaaagc tgtgagcggc ttttaaaatg cgttcgtatg ccggcaatgg caatggtttt
     1981 tctaggccta acaggtattg ggcttctttt tcgtactgct cgaagcattg gaacaggaag
     2041 tccacatcag cgtattcaaa gttgtaggtg gattgctcca cttcgttttg gtggaatacg
     2101 tcgccgtagg tggttttacc gagttcgccg tcagaccaca cgaggtcgta cacgctgtcc
     2161 acgccttgaa tgtacatcgc caaacgctct aagccgtagg tgatttcgcc tgtcaccggt
     2221 ttacattcca agccgccgac ttgctggaag taggtgaatt gggtcacttc cattccgttc
     2281 agccacactt cccaacctaa gccccacgcc ccaagcgttg ggttttccca gttgtcttcc
     2341 acaaaacgaa tgtcgttttg ggttgggtcg aaaccgagca ttttcaggct gtcgaggtaa
     2401 agttcttgaa tgttatccgg cgaaggttta atcaccactt ggaactggta gtagtgctgt
     2461 aaacggttcg gattttcgcc gtagcgaccg tctgtcgggc ggcgagatgg ttgcacatag
     2521 gcaaacgcca ttggctcagg gccaagcgca cgcaggcagg tcattgggtg cgaggtgcct
     2581 gcccccactt ctaaatcgaa cggctgcaca atggtgcaac ctttgcttgc ccagtagtct
     2641 tgcagggcta aaatcattcc ttgaaaggtt tttacgttga attttgtact cattttattt
     2701 tctcttgaat ttgaaaaatg gtcgaaaaat actggttatt atagcttgta agcagtcatt
     2761 ttttgggatt tttttgcaaa aaattaagaa atcgacataa aatcagtttt atgatgtaaa
     2821 tcaacgcttt tttgctcaat ttgtgtaaca tataacctaa tttctcatct aatttgtggg
     2881 gtttatgatg aaatcattat cgaaaatcgc tttctgtttc ttggcattca tcatgccaac
     2941 attttgtttt gccggttcaa acagttacac cacggaaaca atccctttat ttgccgatga
     3001 aaatttgaca cagaaaatcg ggcagctaga agccggagca gaaattaaat tggtgcaaac
     3061 aaccgcaaaa gccgctgaaa ttgagctgaa tttatggcga aaaagcaaag gtttcgggcg
     3121 gatttggtat cattctttca gtaaaaatat taccgatgcg gtatttgaga aatcttttat
     3181 cagcaacaac ccactgttag agattgtaga gagcaaggaa gatccgaaca ccggcttggt
     3241 atggcaaaaa gtgaaaatga acgtgtgggt ggaaaatgcc gaatttaccc aagatctcac
     3301 taacttttgg gcgaacacca aaaataccta taaaacagaa tgcagcgtgt gccataaaca
     3361 acgtgatcct aaaatgcatg atgcaaacga atggattgca gtatttaacg gaatggtcgg
     3421 ttttaccgat atggacgaag ctacccagaa aaaggtgctt cgctacttgc agatgaatgc
     3481 ggcatccagt tctcaataaa atagaaaaag atctcacaag cggtctgttt tatagttgca
     3541 aaataaccat aaaatatgcc cgcttgcctt cgttgaaata tactatcccc tattaataat
     3601 agagaagatt tgatgatttt ccgtactatc cagtaaacgc actatgcctg ttgcgacaga
     3661 tttacggctt acatacattt tccgttcatt aggtaaatca cgcacaatct gatactcatc
     3721 atttacttca tcattattta acccaccggg tcgaataatc agccaattta atgctgtttg
     3781 ctgtaaataa gcttcagctt ccgtcttggc ttttagtgct tcacctaaag cttgctgtgc
     3841 taatgggcta attaaatccc attgttctgc acacccaaca ctagtaacta aaactacttt
     3901 cgtagttggt gaatattttt caactgcttt tatcaaatta atatttgctg ttttgtcgct
     3961 acgaatacct tgttcatttt ttcctcctac taccgtaatc aagatttccg gttgtgtttt
     4021 ttgtaacaag gcgttgcagg attccaaatc taataaatct gctatttcta ctgctatatt
     4081 tcgttcgctg aaaaacgtat ccatagcatc ttttcgtaag acggctatcg ttttctctct
     4141 aggtaatttg tcacagattg ctcgtcctaa caacccattt gccccacaaa ccaaaatcat
     4201 gactagcatc ctccaattaa tttccgcatg gcttgaatct gattttctcg taattgacct
     4261 tgttcatcac gcccaacaaa aatcttaaac atcgcctcac cgctttgatt gataaaagtt
     4321 aacgccaccg ttctttttcc cataaatggg cgatcaagta agtaaatagc agcacaattt
     4381 tcatagcgta aatgaccgtg aattcctcca tctacaccat gttcaaaatt ataaaaacct
     4441 cgcccaattt taccttgtgg caatttagca gttacctctg caatcgcatc aggcgtatga
     4501 ataataaaag tcacagcttc attccaacca gcaattgcct gcataatttc cacaaaacgc
     4561 tcaccacctg tttgcattac catttctttg ggcagacagt taattaccga ttccaagcta
     4621 cattgattca ttcctgccag catttctaaa atttgccctg ggttttcttt taaatttgtc
     4681 cgcaatttat tttctaattc tttagttaat ggcgttatca tgttgttatc cttacttgat
     4741 tgaggaagtg ttaacattag tttacgaatt aatgttggtg accagtaacg accactggta
     4801 ttgagatata cttgattttt ttcacgcttc agtaaatcaa gcgcttccca ttgttgcaat
     4861 aatttttcag ctttcgcatt ttgttcaaaa ggcgttgtat ctaagtaacc caattccatg
     4921 ctatgttgta tcacaccaag cagtgcttta tgttcaccat gtttactcaa aaaagaaagg
     4981 cttttctgat caagaggcga atctaagtag gtctttaaat cagattgtac ttggtaactc
     5041 agcccaccaa aatttccccc cgcaccggag ccaaatgcca aacaaggcat attcgattta
     5101 accaaagtat tatagcgatt gcgttcacct cgatttggaa aagcaaagtg gttattgctc
     5161 acttgctgcc aaccttgtgc ttttaacttc tctactgcat aagcatagtg taagctttgg
     5221 gtgtcaaacc ctgcgggcgc aggtaatttt ccatgttcaa ttaagcgatt aataggcagg
     5281 aaaggataat tattaaaggc gtaaatatct aagcctgaga tcggtaaact agtcgcaatt
     5341 tcaatatcgt tttgccagat atcatctgtt tggtttggca agccaaaaat taaatcagca
     5401 acaatcacag catttaattc cgataaggct tttaaataag tttgagcctc ttcgccacta
     5461 tgtttgcgcc ctaaacgttt gcgaatttcg gagttaaaag tctgaatacc aatagaaata
     5521 cggttcacgc ctgcttcaat acaagcctta gccttatcta tatcaaaatg gctaattcta
     5581 ccctcaatag taaattcaca gtcttcagcg agtggcaaat aacgataaca agctcgaatc
     5641 aatcgtacta aatcttctgt atgtaacgct gttggcgttc ctccaccaaa ataaacggca
     5701 tgaatcttac cttgtcctcg ccatagtgaa gattcatatc gaagttcact aatcacacga
     5761 tcagtataaa tctggctata attttccttc caagcattgc gataaaaacc acaaaaaata
     5821 caatgactag cgcaaaacgg aatatggaaa taagctaaac catcctgtaa taacgcattt
     5881 ggtgcttgtt ccagccataa agattgccat tgattgcgtt caatattttt cccaccccaa
     5941 ataggcataa gtgcctgtcg ttctgggaaa gcatttggag aggcttgttg agatgtccag
     6001 tgtgtatctt ttataatcat tatcgaaaca aaatagtgct ataaacaagg tcatatttat
     6061 aacaaaatta agttatgaat gacttgatta aaatcaaata ataattattt tcaattaatg
     6121 attgagttat gcttactata gtaaatagcc tctcctaaaa tgaatatatc tgtggtttat
     6181 tgctgtaatt ccacaataca agtcacttga ctggaatcta accctttaat tcgccacggt
     6241 gcattaaaaa actgcttaat gttggcattt ttagggagtt ccgctaagtg catatcttca
     6301 atcacagtgg taaacctgcc ggtatagtag cctaaaatcg ctcgatggca atttttaggg
     6361 ttttccgcat caggcactcg ggaagaagga gaccctagtg ccaagaaatc aatgcctact
     6421 cctttcaaat tcgggaaagt atcagataaa tactgcccgg caccggttga aatatagggg
     6481 cattcatttt gataaatagc agggttctcg gttctatatt tctcaaaccc cgttcgtaaa
     6541 aaggcaaaag acaccttgga gagaatatcg acataaggca ataaatcttc tttggtgatc
     6601 ccttctgcct ctcctttggg aatttcaatt aaagcgacct ctttatggca gaaatactct
     6661 atcggcaatt cattgatact taaaccgtct ttcacaaagt ggcgaggagc gtccatatgt
     6721 gtgccgcaat gattcggtag tttcgtgata aaactgctaa atggcgtttc ttcacctacg
     6781 tctgtgcagc gagtcacctc aacaacaggt tctcccggcc aagctaaatc tttaggatct
     6841 aacgggtgag acaaatacat aaacacagtg agcctcctta gtggcgtttt tgctgaagta
     6901 accacccaat cacctcaggg ctgttataca cagcgtccca agtattatga gggttattat
     6961 tgacaatgcc gttgtcgccg gcttgttcaa aagtgaattc ggtatatttc acattggggg
     7021 catttaactc atctttgaga atgcggtagt taatgcgaga accttttacc ggcgagactt
     7081 tgtcctcttt actatggaaa aaccaaatcg gtatatgttt aattgccgcc aaattcgttt
     7141 tggtggcatt gccgtccacc cattcgttgg tgtaggcttc acgaccgctc attaataatg
     7201 ctccggcaaa gaaattcggg cgagccaaca acagatttaa gcccccttca gcacctcgag
     7261 ataagccatt gatataaatg cgtgtggtat caatttgagg attggctttt agggtttcat
     7321 caatcatttt taacacgaga ttgatacgat tttccgtttg ccagtgaata ccgccttttt
     7381 gccctttggc ggcattatca aatgggtcga atacttggtc gtattgcgga gcaagtacaa
     7441 aacttggggc ataaggcagg gtggcaatcg cccctttact ggaaagcagg tgagcaaggt
     7501 tatccgaacc gacttgccct gaaccgtgta ggaaaatcac aagcgggtat ttttcaccat
     7561 ttttttgcaa aggcgaatag agacggtagt tcagtttatt tccagactgg tctaagctca
     7621 cttgttttgc gacaaaatca tcgagataag gggttttgat tttgtcgggt tcagcggttt
     7681 gtgtccattc agtcttgcct agagttgtgc cgctggttaa tttaagcaag cctttttgtt
     7741 ccaccgaata gattaggcga tttgcaaaaa actctggaat tttgaccgct tgtactttct
     7801 ctgtttctac aatgttgccg ttttcatctt tggatttaaa tttcatcggc gctttattag
     7861 catcttttac gctataagtt gccgcatttt tatctgccgt atccaattca ataatcacaa
     7921 atttaccggc ttgcggaagt gcggtcactt ttggctcatt attgacatag gctttgagca
     7981 ccgaacggtt ttctttctcc gcactatcta atgccgtttt gacctgatac agttggcgaa
     8041 gatcgctgcc tgataagaca ttatcaggat attccaatgc cacgccgtta attttttgac
     8101 cttgagcggt gatttcggca agcaacgtaa tattcgctga tttattttcc tgaatcatat
     8161 cctctgcata gagggagtga gaaagtaata gcgtaaataa aagtgttttt ttcagcatag
     8221 gtttctccta aaaaaatcca cctcataaga ggtggatttt aagcagtaac agagtgatat
     8281 taaacgaata acatccaaat aatgccaaca acggcaaagg ctattacacc gaaaatagtc
     8341 gttaaaaacg tccaagttct taagcctacg gatacaggaa cattgaagaa tttcgtccat
     8401 acccagaaga gtgaatcatt cacgtgggat aatgtcatag aacctgcacc aatagctgca
     8461 gtaagaagtg ctaattgcag atcattataa cctgctgcta cagctgcagg agctagaata
     8521 gttgtagtag taatagttgc caccgttgca gaaccttgtg ctgcacgcaa taatgcagaa
     8581 agtatgaaag aaagaaccaa taacggtaag cccgtgttgg ctaatacatc tgctaatgct
     8641 ttacctacgc cactggcatc taacacttta ccgaacatac cgcctgcacc ggtgattaaa
     8701 ataatccccg caatcggtgc taacgcagac tccagtactt cttctaattt atgcttagtc
     8761 caaccgtatc taaaacctaa tacataagca gaaagacaaa cagccacaaa taaggcaaac
     8821 ggagagcttc ctaccatact gaatacttca cgcacgatat gttctttcgg caaggttgtt
     8881 gccgttactg tacctaacat aatcaggatt agcgggaaag aaatcattgc taacacttta
     8941 ccaaaagaag gtagttcaat gcctttctct ttaatcaaat ctttttggtg ctgtaaaaga
     9001 tcgattgaag ttactacttt tacgaaatta ttttttgtaa agaacggaat aaatttttga
     9061 ccgattaaat atgcaggtag cgctgctact aagccaattc ccaatacaaa gccaatatct
     9121 gcgtttaagt tttgagcacc cgctacaata cctggatgag gtggaactaa aacgtgaaca
     9181 agtaacatcg caagcccgat tggcaaagaa taaacaagga tatttccccc taaacgtctc
     9241 gctacactaa aaataatcgg gagcaatacg ataaaaccaa catcaacgaa aacaggaata
     9301 ccgaatataa aacctgtcat acctaatgca aagggagcgt ttttctcacc aaaacgctgt
     9361 aacaaccaat ttgctaatac atccgcaccg tgagattttt caatgatttt ccctaacatt
     9421 gctcccaaac ctactatgag tgcaacgcta cctaaagtac ttcccatacc tgaaatcaag
     9481 gttgggatca ctttactcat tggaatacct gcagttaagg caactgcgat actcactaac
     9541 cccaatgcta agaatgggtg tactttacct ttaatcataa tgaccagaag agcaactacg
     9601 cttgctaatc caatcaaaat taacatttca tttgacataa agtttccttc taaatgttgt
     9661 attcacgtat ttatccgcta atcatcgtgg ttatttatac tgctcaaacc aacctagtcc
     9721 tgaggtggtt tccgctcgtg gtttatactc gcaacctaca tagccttcat acccgatttc
     9781 atcgagtttg ttgaagatat attggtagtt aatttcccct tcgtccggtt cgtggcgatc
     9841 tggcacagag gcaatttgaa tgtgggcaaa tttacccttg agtttgtcgg ttaggcgaga
     9901 taagttgccg tccacattct gtgcgtggaa gtagtcaagc tgtacaaaca cattgtctcg
     9961 gtttaccgct tccacaattt ctagcgtatc aaactggctt ttaagcagat aattcggttt
    10021 cacttcaggg cttagggctt caagcaagac gttaatgccg tgcggtttga atttatcggc
    10081 ggcatattgc acgtttttga taaaggtttg tttataggct tcacgatctt cgccttctgg
    10141 cacgaccgct gccataacgt gaacattctc acaacctaag gcgagggcat attccaacgc
    10201 taaatcaata tcacgatggc tatcagcttc acgccccgga atggcagaaa caccccattc
    10261 accttgagca acatctccgg ctgcggtatt gaacaacacc tgttttaagc catattgctc
    10321 aagtttggct ttcaattctg ctgccggata atcataaggc cataaatact cgacatattt
    10381 aaatccagcg ttggcagccg cttcaaaacg atctaaaaac ggcacttcgt taaacatcat
    10441 cgtaaggttt gctgcaaatt taggcatttt attttcctct gtttttcaga tcattgactt
    10501 cgtcatcggt gagataacgg actttttgac cttgtagaat aaaatagagc ttggaggttt
    10561 cttccaactc ttctgtgtta tccaccgcat cacgcaagtc tgaacctgtg actaccaccc
    10621 cgtgatttgc cagtaaaaag gctttgccgt ctaaggctcg ttcccccagc tctcgggcaa
    10681 tgttgatgtc gcccggacgg tagtaaggaa tgaccggcaa ttttcctacc cgcatcacat
    10741 agtaaggggt gaaagcacgc atagcgttgt cggtatccaa attttccaag caagaaagtg
    10801 cggttaaata agtggaatgc agatgcacta ttgcttggca agccggattt ttctgataca
    10861 tcgccaagtg gaataccgat tcttttgaag gtttatctcc tgaaagaaca ttaccctgca
    10921 tatccaatac ggaaaggcgg tctgcctcta aacgcccgag cgaagagccg gttggggtaa
    10981 ctaaaatgcg attttcatct aaacgcacgg agaggttgcc cgcaccgcca acggtatagc
    11041 cccgctcaaa cagcgagcgg gcaagattga ccatttcaat cttttgttct tgttctgtca
    11101 tacaaacatc tcctgagcaa aactgaagaa atcttcttta ccgaagttac ccgatttcaa
    11161 tgcaagaaaa atcggttttt cgaccgcttg taaccacggc acgcccggtg caatttgttt
    11221 gccgatgtgg aaaccgctga atccaagttg ctgaaccaca atgctcgaag tttcaccgcc
    11281 tgcggtaata aagttagtta cgcctgcggc ttgtaatttt tcggctaatt tggcaaaggt
    11341 attttcaatg gcgtggctgg ctttatcgcc gccgaattgg gtttgaatct ctttcaattt
    11401 ttcaggggga acggtggcat aaaccattgg ggcaaagtca ccgtctaggt ttgcaatcac
    11461 ccattgataa agcgtttcta catagttcgg atcctgaatg gctttttccg cttctaagaa
    11521 ataacttggg gctttttgct ggtaagccgc cacttgggta ttggtcatta ccgagcaaga
    11581 acccgaaagc acaacggttt tgcctttgct tggtacaaac gcattcgtgc cttttttgcc
    11641 gcctgaacgg taagccgcca tataagcccc taagcctgaa ccgcctgtga ctaattgaaa
    11701 atcggcaacc gcttcggcaa gcaccgcaag ttgtgaatta tcggcagcat ctactaccgc
    11761 atatttgtag ccttgctgtt tcaattcagc aaaacgggct ttcacacgct ctgccccttg
    11821 aatcacatca gcataggcaa ccaagccggt tttgccttga gattgtgcat ccattaaacg
    11881 caccaagttg gcatctttca tcggggtaat cgggtggtta cgcataccag attcattcag
    11941 tagcacatcg cccacaaaca aatagccgtt gaaaatggtt ctgccattga caggcagagc
    12001 cggtgtgact acggtaaaat cggtatctaa tgccgccatt agggcatcgg ttaccggccc
    12061 gatattgcct ttctccgtgc tgtcaaaagt ggaacaatat ttaaagtaga attgcgagca
    12121 accattttgt ttcagccaat ctaaggcttg taatgattgt tggattgctt cttccacagg
    12181 gttagagcga gatttcaggc taatcacaat cgcatcaact tgactgttaa gtgtagtttt
    12241 cggcacacca ttcatttgca ccgtttttag cccgttttcg gttaagaaac tggcgatgtc
    12301 actcgcaccg gtgaaatcgt ctgcaataat gcctaacatc ttatttcccc tcttttttag
    12361 gtaattcgat accactgaaa attttaatga ccgcactatc atcttccttg ccgtaacctg
    12421 cgttgctggc ttcggtaaac atagaataag cggtgctggc taagtgaagc gggaaacgca
    12481 aagattttgc ggtgtcgttc accaatccca aatctttcac aaaaatatcc accatagaga
    12541 gtggggtgta atcgccctca acaacgtgtt tcattcggtt ttcaaacatc caagaattgc
    12601 ctgccgcatt ggttacaacg tcatacatta aatcaagcgg aataccggca cgagccgcca
    12661 atgccattgc ttctgcacct gcggcaatat gcacaccggc aagtaattga tggataattt
    12721 ttaccgttgc acccaagccg acttcttcgc caatgttata cactttgcct gcaaccgcat
    12781 ctaataccgg ttttaatttc tcgaatgcct cgctggaacc tgatgccatc acagtcattt
    12841 caccttgtgc tgcttttgct gccccacccg aaaccggagc atctaacatc accaagccta
    12901 aatctgttaa cttctgtgaa atattttttg catcttgtgc agaaatggtg gaagatacca
    12961 tcaccaccgt accttgtttc aaatgttggg ctaagccgtt ttcaccgaat aacaccgcat
    13021 tcacttggtt ggcattaacc accaacaaca acaccgcatc taattcagcg gcaaaatcga
    13081 ccgcacttgt gccgactttc ttagcacctg ctgcttttaa ggtttccaga taattcgggt
    13141 taagatccac accgtatgtg tctaatccgg cagcgataca agattttgct gctcccatac
    13201 ccattgctcc taagccgatg acggctacgc tatatttttg actcattgtt tattccctca
    13261 aataaattaa tgaacttgat ggcggtatat taaccaatag aaaagataaa atctgtgatg
    13321 aagatcacaa atattaacaa taaatgtgaa tttttgtgat tttaattttg gaaactaaat
    13381 ctgatataat ctcttttaac aattaaaata ggttaaaaaa tgatcccctt agagagacaa
    13441 cgagaaatac tacgacttat taataataat ggtgtcgcaa gtattaattt tctggcagaa
    13501 cagctaaaag tatcacatat gacaattcgc cgtgatattc aaaagctgga agagcaaggt
    13561 aaggtatccc tagtatctgg tggagttcaa tctcttgaac gattaatcat ggaattacca
    13621 cacgatgata aatcaatgtt attccaagag cagaaatcag ctataggatc tttagcatca
    13681 cagctaattc cctcaaacac aactatttat cttgatgctg gaactactac attagaaata
    13741 gctcatcgga taatcgatag aaatgactta ctagttgtaa caaacgattt tgttattgct
    13801 cactatctta gtaattcagg aaaatgtgat ttaattcata taggaggaag tgtctgtaaa
    13861 gaaaacctat cgacaactgg ttcacttgca gcagaatttc tgaaaaacct atcaatcgat
    13921 atggcattta tatctacttc atcctggaat ttaaaaggtc taacaacgcc gaacgaaaat
    13981 aaaatccccg ttaaaaaagc aattttagag gcatccaagc aaaacatttt agtgacagac
    14041 tcttcaaaat atggaaaagt cgcaactttt tttgtttgcc ctcttactgt atttgaccag
    14101 attatttgtg ataaaggatt atttgagaat gtacgagacg cactgaaagg gctaagtatt
    14161 aaattagatt taggataatc ttcttaccaa ttttttctga gaacgacaag caatcaaaaa
    14221 gtattatttt tgcaaataag atattaatag ggaaagttaa caatcctagc aacggattgt
    14281 taactgattt tcggctggta ctaataaaat aggaatatta acgtttacca aacatactgc
    14341 ctaagccacc gagaccgcct agaccaccac ccatcatacc tttaacacca cgcatcattt
    14401 ttgccattcc gcctttacgc atttttttca tcatacgttg catatcatca aactgcttga
    14461 gcagcttatt tacatcttgc acctgtgtgc cggagccaag tgcgatacgg cggcggcgtg
    14521 agcctttaat aatatccgga tttgcccgct cttttaaggt catagaattg atgatggctt
    14581 ccattttcat gaacatttta tcatcaacct gacttttaac gtggtcaggc aggtttttcg
    14641 cccccggtag tttatcgagc atcgacatca ttccacccat ttttttcatt tcgataagct
    14701 gctcacggaa atcttccaag gtaaattcat cgcctttttt gaatttggcg gcaatttttt
    14761 ccgctttttc ttgatcaacc gagcgttgaa tatcttcaat taaagacatt acatcgccca
    14821 tacctaaaat gcgggaagcc acacggtcag ggtggaacgg ctcaagggca tcagtttttt
    14881 cacccacacc taagaattta atcggtttac cggtgatttg gcgaatagaa agtgccgcac
    14941 cgcctcgggc atcgccatcg actttggtaa gaataacacc ggtaagcggc aacgcttcgt
    15001 taaaggcttt tgcggtgttg gcggcgtctt gaccggtcat cgcatcaacc gtaaatagcg
    15061 tttcaatcgg attcagcaca gcgtggattt gttggatctc ttccatcatt tcgccatcaa
    15121 cgtgtaaacg accggcagta tccacaatca atacatcaaa gaaattaagc ttagcgtgct
    15181 tcagtgccgc ttctgcaatc gctaccggtt tttggctggt ttcggtcggg aagaagtcca
    15241 cttttaacgc ttcagcaagg gtctgtagct gcttgatagc ggcagggcgg taaacatcgg
    15301 cagaaactac caacaccttt ttcttgtggc gttctttcag gaattttgcc aatttgccga
    15361 cagaggtggt tttacccgca ccttgcaaac ctgccattaa aattaccgca ggcggttggg
    15421 ccgcaagatt cagctcctcg ttggcttctc ccattgccgt ttctaattcg ctttgtacga
    15481 tttttaagaa ctcttgcccc ggcgtgaggc ttttgtttac ctcaacccct aacgcacgct
    15541 ctttgacctt gttgatgaaa tcacgcacaa cagggagggc aacatccgcc tccaacaatg
    15601 ccatacgaac ttcacgcagg gtatctttaa tattatcttc cgttaggcga cctttgcccg
    15661 taatgttacg cagcgtttta gacagtctgt cagagaggtt ttcaaacata tcagctttct
    15721 caatttgcaa aattttagga aaaaagtacc gcttgtgagc ggaaagttgc cgccattata
    15781 caaaaaaaag cgttacggtt atagggaaat aaaaaaacgg catagcgatt aaactatgcc
    15841 gtaaaatttg acgatattcg aggaatcatt atttagttat attgtgcgat cataatactc
    15901 cgaattgcgt ataaaagtga agtgatattt tcaaatttat gttagaaatg agaggtaaat
    15961 tacaaaatta aaggggatat tattgtttga aaaaataaga gcgaaaagaa aaccctgatg
    16021 attgctcatc agggcttc
//
LOCUS       DANLRW010000056        15732 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.056, whole genome shotgun sequence.
ACCESSION   DANLRW010000056 DANLRW010000000
VERSION     DANLRW010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15732
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.056"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..516)
                     /locus_tag="PXA71_001472"
     CDS             complement(<1..516)
                     /locus_tag="PXA71_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5105579.1"
                     /translation="MLDSLKEVNQKLDKKADKVGGGTKEDALVTLDTLIASGTVKAET
                     AMSLLPTLQKGAVATGASSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGSFEL
                     AYMASWLPQQMAAAKQAGLSSIEGFERLLIANQQARVTAGTSDEAGNNLVNLLGKITA
                     KETNERFKNIEY"
     gene            615..866
                     /locus_tag="PXA71_001473"
     CDS             615..866
                     /locus_tag="PXA71_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5105580.1"
                     /translation="MAPTISDGDQMLVDFSKKEARGDDKIYLVQNGESVWVKRVRKVW
                     DYVELISDNESYRPIRITADEAQNLQIIGQVVHIGHSLV"
     gene            complement(1062..1262)
                     /locus_tag="PXA71_001474"
     CDS             complement(1062..1262)
                     /locus_tag="PXA71_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HDL5105581.1"
                     /translation="MQYVLDLTGYACPLPLLMAKKAMNDLKKGDSLEILLNQQSSLTD
                     FELLAKEQGWLCELQAVENVGY"
     gene            complement(1321..1833)
                     /locus_tag="PXA71_001475"
     CDS             complement(1321..1833)
                     /locus_tag="PXA71_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HDL5105582.1"
                     /translation="MQQLEPQTFASWAEPIDMLYACHSKVKSFCKQLQILPDYLEKNG
                     VNQAVKNDVQQILNYFNISAPLHHEDEEDDFFPELIKVQPQAQAEVDELERQHVHLHK
                     NWDYLSAQLEDLLAGKRENVDRDLIERFVAGYDVHIAIEEPLFELGREHLAQDKLSAM
                     GKVMADRRKL"
     gene            complement(1846..3000)
                     /gene="tgt"
                     /locus_tag="PXA71_001476"
     CDS             complement(1846..3000)
                     /gene="tgt"
                     /locus_tag="PXA71_001476"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDL5105583.1"
                     /translation="MKYELKTTSGNARRGRLTFNRPKGEFHVETPAFMPVGTYGTVKG
                     MTPEEVKATGAQILLGNTFHLWLRPGQEVMKMHGDLHDFMQWHGPILTDSGGFQVFSL
                     GKLRKIKEEGVTFQNPISGEKIFLSPEKSMEIQYDLGSDIVMIFDECTPYPATFDYAK
                     KSMEMSLRWAKRSRDRFDELENPNALFGIIQGGIYEELRKVSVEKLVEIGFDGYAVGG
                     LAVGEPKEDMHRILEYVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNA
                     RNGHLFVTNGIVKIRNAKYRADTTPLDPECDCYTCKNYTKAYLYHLDKCGEILGARLN
                     TIHNLRYYQRLMAEIRQAIEEDRFDDFVVEFYARIGKEVPPLQSEVKEQK"
     gene            complement(3059..3199)
                     /locus_tag="PXA71_001477"
     CDS             complement(3059..3199)
                     /locus_tag="PXA71_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105584.1"
                     /translation="MKKLLLCVGILVLAACSSTGVGGSIGAGGGSNGVGIGLGVGTDF
                     RF"
     gene            3293..3865
                     /locus_tag="PXA71_001478"
     CDS             3293..3865
                     /locus_tag="PXA71_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1439 domain-containing protein"
                     /protein_id="HDL5105585.1"
                     /translation="MKILRKFAAVCVVSMAMLSANANLLTISEQEINDYLATKLAEKI
                     PLKDKVGIPKLFELDYRLHSLTSQIGRTEEKKVAISGVVDGLLNAKGKKYAASIHLNM
                     DTTPYYDPQKGALFLKDVRLLSWSATPAKYQAELQMFLPVLADGLSSFLNSTPVYTLD
                     ENKTKEAMVKKFGKAIVVENGNIKLETTIF"
     gene            3967..4185
                     /gene="cspD"
                     /locus_tag="PXA71_001479"
     CDS             3967..4185
                     /gene="cspD"
                     /locus_tag="PXA71_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock domain-containing protein CspD"
                     /protein_id="HDL5105586.1"
                     /translation="MDIGIVKWFNNVKGFGFITSDVCEGDIFAHFSEIQAEGYRSLKV
                     GQKVQFELVQGERGASASNITPISEKTL"
     gene            4275..5189
                     /locus_tag="PXA71_001480"
     CDS             4275..5189
                     /locus_tag="PXA71_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5105587.1"
                     /translation="MPSSYQLVLINLLYIFGIGLNIVLLRFLSLHFDPLNNNGIRFLV
                     GGFTLLFFILWRFRTSLSQLIKTPKLIAISLFVGLMMSANMYFWLKGVKITNAVTVSI
                     FGVLAMPFGVIIAAIFFQDERERIKSKAFWFGSILTIIGSLGFIWHGKTLSIGEGFIL
                     GSVFLFLSIIIRNIQNLVVKFARELNVLTLSCVTSLTTSLSSLLLSQQAGKFNELFTA
                     PNWLLFSLMVAGIYAIMIGMVLTFHIIQTQGLITYQVLELLMPVSTAIIAYILLDERI
                     SIVQMGFACIVILGSSIALKLVKYPKHY"
     gene            5308..6168
                     /gene="araC"
                     /locus_tag="PXA71_001481"
     CDS             5308..6168
                     /gene="araC"
                     /locus_tag="PXA71_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HDL5105588.1"
                     /translation="MYKNLSLLSPTYPFDLEFIAGLTQCEKGNYLDSIVDRQQGMHGY
                     MLQLTTFGRGSVFDGKHVFTAHRGQLLLFTPNAVQHYHRHPESQYWHYKWVYFQPNPK
                     WNKWLNWSDMEEKIGRITISDDRYFQEISQLFSKIELELKSSKFFKEDIATSLLEYLL
                     MKCISAEKIEVIPVIDQRILTVCDLILTNLAKNESLEAMAEKVFLSPSRLSHLFKQSL
                     GISLVQWRELQRISESKKLLYFSNISISNIAKSLGYEDSLYFSKIFKKHTGLSPSEFR
                     TLERRKDSEM"
     gene            6355..7329
                     /locus_tag="PXA71_001482"
     CDS             6355..7329
                     /locus_tag="PXA71_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5105589.1"
                     /translation="MKKPTFKHALFSSILALACYGSAFANDVVNISKIDGMPWFNRMA
                     EGVVQAGKDNNINAYQVGPSNTDAPQQVKLIEDLIAKKVSAISIVPNDANALEPVLKK
                     AKQNGIVVLTNESVGQPSADWDIEIIDNAQFAADYVEEVAKAMGGKGGYVIYVGGLTV
                     PQHNLWADLFVKYQKEHYPDMFEVTSRMPVAENINDARRTTIDLVKAHSDLKAVVSFG
                     SQGPIGAGLAVKEKRLKNKLNVFGMMIPSQAANLIKSGDITMGITYDPANAGYALAAV
                     AAKVLKGEKIEDGLEIPTVGKAKVDSEKKLLQFHNVLKVTKENIDKLY"
     gene            7384..8874
                     /locus_tag="PXA71_001483"
     CDS             7384..8874
                     /locus_tag="PXA71_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5105590.1"
                     /translation="MAFISMRHISKTFHGIKALNQVNLSLDYGEALCLAGQNGCGKST
                     LIKILSGVYQPDKGAEIQIGATQYTKLTPQESIDKGIQVIYQDLALFPNLTVAENIAI
                     NLHRKFGWVSQDHIHQVALTAIQSINANLDLNAILEDLPIAQQQLVAICRALAQNARL
                     LIMDEPTASLTAKEVKDLLDVVIKLKSKGISIIFVSHKLQEVMSVSDSVLVLKDGNMV
                     GQYPIREMNEKRLGFLMTGLEIDYKRLDLPDFLQRKTVLEVRNLTLPHQYQEINFSLR
                     EGEIVALTGLLGSGRTELCLSLFGITQPQSGDILLNGEKVIFNTNRDAIAKGIAYVSE
                     DRMHTGLIMAESIHHNIISTIFHKITDKLQIIQSSKAYASSQALIDSLKIKVSDSDLP
                     VNTLSGGNAQRVSIAKWLAIDPKIIILDAPTIGVDIANKEGIFQIIKSLAQQGIAVIF
                     VTDEVEETYYNSHRVIVMKKGRIVDEILPAYSSEKSIAEVIYENQQ"
     gene            8858..9817
                     /locus_tag="PXA71_001484"
     CDS             8858..9817
                     /locus_tag="PXA71_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5105591.1"
                     /translation="MKISNNHILSSTLLILILLLTLFTRDFATIENLYDVVNNYAMLM
                     ILACGLFVVLLSGGIDISFPAITIISQYVMVTLIGKYDVGFAGVFVISSTIGILLGFI
                     NALFVNRLSVPSIIITISTLNIFYGGLLYFTKGVWLYEYPEWFTQEIVFFKQITAEGV
                     EFGLSFQALMAILAVILTGLITNKLTIGRKIYALGGNPDATSRIGFNLLFLHLFAYGY
                     MGFMAGLAGIVQSYTVQSVAPDSLLGYELTVLAAVVLGGASLSGGRGTLLGTVMGVML
                     LAIIQNGLNLMNVSSYWQTIITGIIIILSISATALSQRKKQGA"
     gene            9820..10770
                     /locus_tag="PXA71_001485"
     CDS             9820..10770
                     /locus_tag="PXA71_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5105592.1"
                     /translation="MKSKLDPTIFYLLALFAVAVIAFSIFIPDIFWSVSNFQSMASQI
                     PVLGILTLAMALPMLTGGINLSIIAGMNACSLIIAYFITQYTGISWLFIAILLSLCCA
                     LAIGLLNGTLIAIIRVSPILATLGTMTLINGINILVTNGSTIANFPETMLSINASAFL
                     WIPLPILIFLFLAGLIWFFLEKTAMGKAVYFIGNNEKATYYSGINTKKVLIWVYVISS
                     ILCVFAAILMMSKLNSAKASYGDSYLLISILAAVLGGINPDGGKGKLLGIMLALVLLQ
                     VIESGLNMLGISSYITMILWGSLLLFFIFLQKNRLFRLTQ"
     gene            10783..12378
                     /locus_tag="PXA71_001486"
     CDS             10783..12378
                     /locus_tag="PXA71_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FGGY-family carbohydrate kinase"
                     /protein_id="HDL5105593.1"
                     /translation="MQNEKQLIEQGNTVIGIELGSTRIKAVLISSDGTILATGGADWE
                     NRLIDGIWTYHQNEIWEKLQAAYMDLSKTVKEKYHTTIRTAKALGISAMMHGYLPFDK
                     HGNPLVAFRTWRNNITLTSSEKLTALFQYPIPQRWSIAHLHQALLNQEPHLPEIDYLT
                     TLSGYVHWQLTDHKVLGIGDASGMFPIDTELKSYNPTMLAQFDRAIADYRMPWKLEAI
                     LPQVRVAGEQAGKLTEKGAKLLDPTDNLQAGIPLCPPEGDAGTGMIATNCIKEKTGNI
                     SAGTSAFAMIVLEKALSKAYSELDIVTTPAGKLVAMAHANNCTSDINAWVNLFGECLS
                     VFGVNICTEELYEMLFLHALQGDADCGGLLSYGFHSGEHNVGLSEGCPVFLHPTNAHF
                     NLANFMRTHLYTAFGAMKLGMDILINQEKVEISRILGHGGIFKTEGVAQKILSSALNI
                     PLATASTASNGGAWGIALLADFLSVSDRYSLEEYLDNCIFNTTKLNLVQPDKTMSEGY
                     ERFMQRYKQGIPVVEKALFLNTD"
     gene            12608..13810
                     /gene="yedE"
                     /locus_tag="PXA71_001487"
                     /pseudo
     CDS             12608..13810
                     /gene="yedE"
                     /locus_tag="PXA71_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005824242.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
     gene            13846..14115
                     /gene="yedF"
                     /locus_tag="PXA71_001488"
     CDS             13846..14115
                     /gene="yedF"
                     /locus_tag="PXA71_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007241376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HDL5105594.1"
                     /translation="MAFTVVQKLDKDPKDITPDYTLDTLGEPCPYPAITMLETMPQLQ
                     KGEILELLSDCSQSINNIPIDTKNHGYTLLSVEQNGTKLRYLIQR"
     gene            14215..14559
                     /locus_tag="PXA71_001489"
     CDS             14215..14559
                     /locus_tag="PXA71_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HDL5105595.1"
                     /translation="MNKYALLAIFWFIIGIYALLFRESTNDIPPFPHFDKVSHFALFF
                     IQIWLSANAFIRSKKGIPYFGLIIFALLYAFTSEWAQATFTSTREGSWLDGLADMLGA
                     SLSLLLVKYCKK"
     gene            complement(14622..15569)
                     /locus_tag="PXA71_001490"
     CDS             complement(14622..15569)
                     /locus_tag="PXA71_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HDL5105596.1"
                     /translation="MNRITQILNIKHPIVQAPMSWLTDAHLVASVAEAGGLGFLAPHA
                     GQTTNPTSNEEVLDRMRNEIRKVKALTDKPFGVPFILSYDFSLIPLMVDLFIEERVPV
                     VLDNGWLDPEIYAKFKAAGIKIICRLPNPNLADALKAQALGADILVLTGFDEGGTLPM
                     KEVGSFNVLAEFVGKVDLPIMLAGGIADKKAVQAALTLGAEGVWIGTAFIATEECRAS
                     EKVKNWIVEANANDLLLFRTEPHYYRSLPTGLAKKCFEMSENGATRSEIAKVMNAGTG
                     MRLGMLEGDFDNGYVSVGNGISQINKIKSVKELIDELMA"
BASE COUNT         4571 a         3206 c         3060 g         4895 t
ORIGIN      
        1 atattcaata tttttaaaac gctcatttgt ttctttagct gtaatcttac caagcagatt
       61 taccagatta ttacctgcct catcgcttgt accggcagtg acacgagcct gttggtttgc
      121 aattaaaagt cgctcaaagc cctcaatact actcaaaccg gcttgttttg cagctgccat
      181 ttgttgaggc aaccaacttg ccatatatgc aagctcaaaa ctacctgctt gcccggctgc
      241 aacagccata tccaatgccc gcccaatatc ctcttctttg atgccaaatt gttgcataga
      301 ggagatcgca atttttgcca tatcctccga gcttgcccct gttgccaccg cccctttctg
      361 caaagtaggt aatagactca ttgcggtttc ggctttgact gtaccggagg caatgagcgt
      421 atcaagcgta actaacgcat cctcttttgt gccaccccca accttatccg cctttttatc
      481 aagtttttgg tttacttctt tgagcgagtc taaaatatcg tccagctttt ccttaagagc
      541 cttattcaga cagcctatta agcctaggcg taaaagccca taattgtggc gtattttggg
      601 ctaatggcac atcaatggcc ccgactatca gcgatggtga tcaaatgtta gtggatttca
      661 gcaaaaaaga agcccgtgga gacgataaga tttatcttgt gcaaaatggt gaaagcgttt
      721 gggtaaaacg tgtaagaaaa gtgtgggact acgttgaatt gattagcgat aatgagtcct
      781 accgcccaat ccgaattaca gcagacgaag ctcaaaactt acaaatcatc gggcaggtag
      841 tccacatcgg acactcttta gtttaaaaca gatttaaaat agttttaaaa ccgatcaaac
      901 ctatgcaaaa aatatcgcaa aaactgccca tttttttcta atcctgctca ttttgttttt
      961 tgcatagccc caaccaaaca ataacggcga acccttgtat tcacggggct cgccgttatt
     1021 tttccgccca aatttttttc tttctctcta tgcaaaaaag atcagtaccc cacattttca
     1081 accgcttgta gctcacaaag ccaaccttgc tctttggcaa gcagttcaaa atcggtaagg
     1141 ctactctgct gattgagtaa aatttccaag ctatcgccct ttttaagatc gttcatcgct
     1201 ttttttgcca ttaataacgg caaggggcag gcatagccgg ttaaatctaa aacatattgc
     1261 atagcgaaat agggaataaa gaaaaagggc gaatattgaa attcgcccaa tcacaaaaga
     1321 ttagagttta cggcggtctg ccatcacttt gcccatagcc gataatttgt cttgagctaa
     1381 atgctctcgc ccaagctcaa agagtggctc ttcaatcgca atatgcacat cataacctgc
     1441 cacaaaacgc tcaattaagt ctctatccac attttcacgt ttacctgcga gcagatcttc
     1501 aagctgtgcc gacaaatagt cccaattttt atgtaaatga acgtgctggc gttccagttc
     1561 gtctacctct gcttgagctt gtggttgcac cttaataagc tcagggaaga aatcatcttc
     1621 ttcatcttcg tgatgtaaag gggcagaaat gttgaagtag ttcaaaatct gctgcacgtc
     1681 attcttcact gcttggttta ccccgttttt ctcaaggtaa tccggcaaaa tttgcaactg
     1741 tttacagaaa ctttttactt tgctgtggca agcataaagc atatcaatcg gctctgccca
     1801 gcttgcaaag gtttgtggtt caagttgttg catatacact ccttgttatt tctgttcttt
     1861 tacttcagat tgtaaaggtg gcacttcttt gccaattcgg gcataaaatt ccactacaaa
     1921 atcatcaaaa cgatcttctt cgatggcctg gcgaatttct gccattaggc gttgatagta
     1981 gcgtaaatta tgaatggtgt ttagtcttgc ccctaaaatc tcgccacatt tgtctaagtg
     2041 atataaatag gctttggtgt agtttttgca agtgtaacaa tcacattcag gatcaagcgg
     2101 tgtggtgtct gcacgatatt tcgcattacg aatttttaca atgccgttgg tcacaaataa
     2161 atgtccgtta cgggcattgc gggttggcat tacgcagtca aacatatcaa taccacggcg
     2221 aaccccttcg actaaatctt ctggcttgcc tacacccatt aaatagcgtg gtttatctgc
     2281 cggaatttgc gggcaaacgt attctaaaat gcggtgcata tcttctttag gttcacctac
     2341 cgccaagcca ccgactgcat agccatcaaa gccgatttca actaattttt ccaccgagac
     2401 tttgcgaagt tcttcataaa taccaccttg aataatgcca aataacgcat tcgggttttc
     2461 aagttcatca aagcgatcac gagaacgttt cgcccaacgt agtgacattt ccatcgattt
     2521 ttttgcataa tcaaaggttg ccggataagg agtacattca tcaaaaatca ttacaatgtc
     2581 tgatccaaga tcgtattgga tctccattga tttttccggc gaaaggaaaa ttttctcacc
     2641 gctaatcggg ttttggaaag ttacgccttc ttctttaatt ttacgcagtt tacctaagct
     2701 aaaaacttgg aaaccgccgg agtcggttaa aatagggccg tgccattgca taaaatcgtg
     2761 caagtcaccg tgcatcttca tcacttcttg ccccggtctt aaccataaat ggaaagtgtt
     2821 gcctaataaa atttgcgccc ctgtcgcttt aacttcttca ggagtcattc cttttaccgt
     2881 gccataagtg ccaacaggca taaatgccgg tgtttcaacg tgaaattcgc ctttcgggcg
     2941 gttaaaagtt aaacgcccac gacgagcgtt accacttgtt gtttttaatt cgtacttcat
     3001 tttaatccac aaataaacag ttcgtgaaag cggtcaaaaa ccaccaaaaa tttaccaatt
     3061 agaatcgaaa gtcggtgccg acccctaagc cgattccaac gccgttagag ccaccaccgg
     3121 ctccaatact gccacccaca ccggttgatg agcaagcagc taacactaaa atgccaacgc
     3181 ataataagag ttttttcatt ttttgctgtc ctaaacgaaa aagagagtct atgatagacc
     3241 caatgtattc taacctgttt aatggattaa acctaatttt aaagggtaaa ttatgaaaat
     3301 tttacgtaaa ttcgctgctg tatgcgttgt ctcaatggct atgctctctg ctaacgctaa
     3361 tttgctcact attagcgagc aggaaatcaa cgactattta gccaccaaat tagctgaaaa
     3421 aattccttta aaagataaag tcggtattcc taaattattt gaattggatt atcgcctgca
     3481 ttcacttacc agccaaattg gcagaaccga ggaaaaaaaa gtagctattt ctggcgttgt
     3541 tgatggactt ttaaacgcaa aaggcaagaa atatgctgcc tctatccatt taaatatgga
     3601 taccacgcct tattatgatc cacaaaaagg ggcattattt cttaaagatg tcagattgtt
     3661 aagttggtct gcaacaccgg ctaaatatca agcagagctg caaatgtttt tgccggtgtt
     3721 ggctgatgga ttaagtagtt ttttaaacag tacgcctgtt tatactttag atgaaaataa
     3781 aacaaaagaa gcaatggtga aaaagttcgg caaagccatt gtagtagaaa atggtaatat
     3841 caagctagaa accactattt tttaaataat tttgtgatct tcgtctaatt tttacacttt
     3901 gatagttgag cttttacgcg ttttatttac aatccaaata tcgccattca ttatttggag
     3961 agttctatgg atatcggtat tgttaaatgg tttaacaatg taaaaggatt tggttttatt
     4021 acatcggatg tatgtgaagg agacattttt gctcattttt ctgaaattca agcagaaggt
     4081 tatcgctctt taaaagtcgg ccaaaaagta cagtttgaat tagttcaagg agagcgaggt
     4141 gcctcagcct caaatatcac gcctataagc gaaaaaacgt tataatccgt cgttaataaa
     4201 attattgtta taaccatact ttattagatt ttaaagctca gcttttacag ctgagccatt
     4261 tttgcttttt gaatatgcct tcctcttatc aattagtctt aattaaccta ctttatatct
     4321 tcggtattgg tctaaatatt gtactgctta ggtttctcag tttgcatttt gacccattaa
     4381 ataataacgg tatacgtttt cttgttggtg ggttcacctt attatttttc attttatgga
     4441 gattccgcac atcgctgtct cagctgatta aaactccaaa attgattgcg atttctctat
     4501 ttgtcgggtt aatgatgtcc gcaaatatgt atttttggct aaaaggggtc aaaattacaa
     4561 atgctgttac cgtctctatt tttggggtat tagctatgcc atttggtgtg attattgccg
     4621 ccatattctt tcaagatgaa agagaacgca ttaaaagcaa agctttctgg ttcggctcaa
     4681 ttttaacgat catcggttca ctcggattta tttggcacgg gaaaacactc tcgattggcg
     4741 aaggatttat tcttggttct gtgttcttat ttttgtcgat cattatccgt aatatacaaa
     4801 acctagttgt aaaatttgct cgagaactga acgtattaac cctaagttgt gtaacatctt
     4861 taactacttc actctcgagt ctattactta gccaacaagc aggtaaattt aatgagcttt
     4921 ttactgcacc aaactggcta ctattctctc tgatggttgc tggtatttat gcgattatga
     4981 tcggaatggt attaaccttt cacattatcc aaacccaagg actgataacc taccaagtat
     5041 tggaactatt aatgccggtt tcaacagcca tcattgctta tattttactg gacgaacgta
     5101 tttccattgt tcaaatgggc tttgcttgta ttgtgatttt aggctcaagt atcgccttaa
     5161 agttagtaaa atatcctaag cactattagg atctttgcta attaatattg gtaaaattac
     5221 atttggttta ctaatctgag cgttcattca ttagtaatga taaacaagcg gttatttttt
     5281 gttatttttt ggtaaatact gatagtcatg tataaaaacc tttctttgct ttcaccgact
     5341 tatccatttg accttgaatt catcgccggt cttactcaat gtgagaaagg taactatctt
     5401 gattctattg tcgataggca acaaggaatg cacggttata tgcttcaatt aaccactttt
     5461 ggtcgtggtt ctgtttttga tggtaagcac gtttttaccg ctcatcgagg gcagttactc
     5521 ctctttacac ccaatgccgt tcaacactac caccgtcacc cggaaagcca atattggcac
     5581 tacaaatggg tctattttca gccgaatcct aaatggaata aatggctgaa ttggtcagat
     5641 atggaagaaa aaataggacg tatcaccatt agcgatgatc gttactttca ggaaattagc
     5701 caacttttca gtaaaattga attagaactt aaatccagta aattttttaa agaagatatt
     5761 gcaacaagtt tgttggaata cttacttatg aaatgtattt ccgccgagaa aattgaggtt
     5821 attcctgtca ttgatcaacg cattttgaca gtttgtgatt taatcttaac gaatttggct
     5881 aaaaatgaga gcttagaagc aatggcagaa aaagtatttt tatcgccatc tcgcctctca
     5941 catcttttca agcaatcgct ggggatcagc ttagtgcaat ggcgggaatt acaacgcatt
     6001 tccgaatcca aaaaattgct ttatttctct aacatctcta tctctaatat tgcgaaatcc
     6061 ttaggctatg aggattctct ctacttttcc aaaattttca aaaagcatac cgggctgtca
     6121 ccctctgagt ttagaacctt agaacggcgt aaagacagtg aaatgtgatc ttgatctcac
     6181 tttactttgc atagcagaat tttccatatc gataacaaaa agttacctgt ttttctctca
     6241 ttcaaaagca taagatacaa acagctttaa tagtgctgtt tctattagag aagggatatc
     6301 aagctctgtg agtgatattc agtgaaataa cttcttatgt atgagggaag aacaatgaaa
     6361 aaaccaacgt tcaagcacgc attattttca agtattttag ctttagcctg ttacggctcg
     6421 gcatttgcca atgatgttgt taatatctcc aaaattgacg gtatgccgtg gtttaatcgt
     6481 atggcagagg gtgttgtgca agcaggcaaa gataacaata tcaatgctta tcaagttggt
     6541 ccatcaaata ccgatgcacc acaacaagta aagttaattg aagatttaat tgcgaaaaaa
     6601 gttagtgcta tttccatcgt ccctaacgat gcaaatgcct tagaaccggt actgaaaaaa
     6661 gcgaaacaga acggtattgt ggtattaacc aatgagtcag tcggacaacc tagtgccgat
     6721 tgggatattg aaattatcga taatgcacaa tttgcagcag actatgtaga agaagtagca
     6781 aaagctatgg gcggaaaagg cggctatgtg atttatgttg gtggtttaac cgtgcctcaa
     6841 cataatctgt gggctgattt attcgtgaaa taccagaaag agcattatcc ggatatgttt
     6901 gaagtgacca gcagaatgcc tgttgccgaa aatattaatg atgcacgccg taccaccatt
     6961 gatttagtga aagcccattc cgatcttaaa gcggtcgttt cttttggttc acaaggtcct
     7021 attggtgcag ggttggcagt gaaagaaaaa cgcttaaaaa ataaattaaa tgtcttcgga
     7081 atgatgattc cttcccaagc agccaattta attaaaagcg gtgatattac aatgggaatt
     7141 acctatgacc cggccaatgc aggttatgct ttagctgctg tcgctgccaa agtattaaaa
     7201 ggcgaaaaaa ttgaggatgg attagagatc ccaacggtcg gtaaagccaa agtagatagt
     7261 gagaaaaaac tacttcaatt ccacaatgtg ctgaaagtca ccaaggaaaa tatcgataaa
     7321 ttatattaat ttgcttgaaa tatgggctga tagccagccc atattttccc tcaggaggca
     7381 cttatggcat ttatttcgat gcggcatatc agtaaaacat tccacggcat aaaagcatta
     7441 aatcaagtca atctctcatt agattatggc gaagcacttt gtcttgccgg tcaaaatggc
     7501 tgtggaaaat caaccttgat caaaattctt tccggcgttt atcaaccgga taaaggggct
     7561 gaaattcaaa ttggtgcaac ccaatatacc aagctgacac cacaggaatc gattgataaa
     7621 ggtattcaag tgatttatca agatttagcc ctcttcccca atttaaccgt ggcagaaaat
     7681 attgccatta acctgcaccg aaaatttggc tgggtgagtc aagatcacat tcatcaggtt
     7741 gccctcactg ctattcaaag cattaatgca aatctagacc tgaatgcaat attagaagat
     7801 ttaccgatcg ctcaacaaca gttagtcgct atttgtcgag cgttagcaca aaatgccaga
     7861 ttattgatta tggacgagcc gactgcctca cttactgcaa aagaggtcaa agatctgtta
     7921 gatgtcgtca tcaaacttaa aagcaaaggc attagcatca tctttgtcag tcataaattg
     7981 caagaagtaa tgagtgtttc cgatagcgta ttagtgctga aagatggcaa tatggttggg
     8041 caatatccta tccgtgaaat gaatgaaaaa cgccttggtt tcctaatgac tgggctggaa
     8101 atcgattaca agcggttaga tttgccggat tttttgcaaa gaaaaaccgt attggaagtc
     8161 cgcaatttaa cgctgcctca tcagtatcaa gagattaact tttcgctacg agaaggggaa
     8221 attgttgccc ttacaggatt gctcggttca gggcgtactg agctttgcct aagtttattc
     8281 ggcattactc aaccacaatc cggcgatatt ttattaaacg gtgaaaaagt gatatttaac
     8341 actaaccgtg atgccattgc caaagggatt gcttatgtat cggaagatag aatgcacacc
     8401 gggctgatta tggcagagtc gattcatcac aatattattt cgactatttt tcacaaaatc
     8461 accgataaat tacagattat tcaatcctcg aaggcttatg caagtagcca agccttgatt
     8521 gattcattaa agattaaagt atccgattca gatttgcctg ttaataccct ttccggaggg
     8581 aacgcacagc gagtttcgat tgcaaaatgg ctggcaatcg accccaaaat tattatttta
     8641 gatgccccga ctattggggt cgatatcgcc aataaagaag ggatcttcca aattattaaa
     8701 tcattggctc agcaaggcat tgcagttatt tttgtgactg atgaagtgga agagacctac
     8761 tacaacagcc atcgggtaat tgtaatgaaa aaaggtcgca ttgttgatga aatcttgccg
     8821 gcatattcca gtgaaaaatc gattgcggag gttatttatg aaaatcagca ataatcatat
     8881 tctttccagt acgttactga ttttaatcct attattaacc ctatttactc gtgattttgc
     8941 aactattgag aacctttatg atgttgtaaa taattacgca atgttaatga ttttagcttg
     9001 tggtttattt gtggtattgc tgtctggcgg cattgatatt tctttccctg ctatcactat
     9061 tatttcccaa tatgttatgg tcactctgat cggtaaatat gatgtaggat ttgccggcgt
     9121 ttttgttatt tcttccacca tcggcatatt attaggtttt attaatgctc tatttgttaa
     9181 tcggcttagt gtcccttcca ttattattac gatctcaaca ctcaatattt tttatggcgg
     9241 actactctat tttaccaaag gtgtatggct ttatgagtat cccgaatggt ttacccaaga
     9301 aatcgtgttc tttaaacaga taactgctga gggagtggaa tttggattat cgtttcaagc
     9361 attaatggct attttggcgg tgatattaac cggcttaatt accaataaac tcactattgg
     9421 tcgaaaaatt tacgctcttg gtggtaatcc ggatgcaacc tcccgtattg ggtttaatct
     9481 cttatttctc catctatttg catacggtta tatgggcttt atggcaggct tggcaggcat
     9541 agtgcaatct tataccgtac aatctgtcgc accggattca ctactgggtt atgaattaac
     9601 cgtcctagct gccgttgtat taggtggtgc tagtttatca ggtggtagag gcaccctgct
     9661 tggtacagta atgggcgtaa tgttactggc gattattcaa aacgggctaa atttaatgaa
     9721 tgtatcgtct tactggcaaa ccattattac cggtatcatc attatcttaa gtattagtgc
     9781 aacagcctta agtcagcgga aaaaacaagg agcataacga tgaaaagtaa actggatcca
     9841 acgattttct atctcttagc actcttcgca gttgcagtta tcgcctttag tattttcatt
     9901 ccggatattt tttggtctgt cagtaacttt caatctatgg catcacaaat tccagtatta
     9961 ggtattttaa ccctagcaat ggcattaccg atgttaacag gtggaataaa tctttccatt
    10021 attgccggaa tgaatgcttg ctcattaatt attgcctact ttattacgca atataccggt
    10081 atttcttggt tatttattgc tattttatta agcctttgct gtgccttagc cattggatta
    10141 ctcaacggca cattaattgc cattattcgt gtttcaccaa ttttggcaac cttaggcaca
    10201 atgactttaa ttaacggcat taatattcta gtcactaacg gttcaaccat tgcgaacttt
    10261 ccggaaacaa tgttgagtat taatgcttca gcctttttat ggattccgct acccattcta
    10321 atctttctct ttcttgctgg gctgatttgg tttttcttag aaaaaactgc aatgggtaaa
    10381 gcggtttatt tcatcggcaa taatgaaaaa gccacctatt attcgggtat taataccaaa
    10441 aaagtgctga tttgggttta tgttatctcc tcaattcttt gtgtatttgc agctattttg
    10501 atgatgtcta aactcaattc tgcaaaagcc tcttatggtg attcctattt gttgatctcc
    10561 attttagccg cagtattggg cggtattaac cctgatggag gtaaagggaa actattaggg
    10621 attatgctcg ccttagtttt attacaagtg attgaaagtg gcttaaatat gctcggcatt
    10681 agcagttaca ttacaatgat tttatgggga agcttattgt tattctttat cttcctccaa
    10741 aaaaatcgcc ttttccgact aacacagtaa tggtggtaga ttatgcaaaa tgaaaaacaa
    10801 ctcattgaac aaggtaatac tgttattggt attgaattgg gctcaacccg aattaaagcg
    10861 gtgttaatta gctcagatgg gacgatttta gcaaccggtg gggcggattg ggaaaatcga
    10921 ctgattgacg gtatttggac ctatcatcaa aatgaaatat gggaaaaact acaagctgct
    10981 tatatggatt taagcaagac agtcaaagaa aaatatcaca caaccattcg cacagccaaa
    11041 gcattgggaa ttagtgcgat gatgcacggc tacttacctt tcgataaaca cggaaatccg
    11101 ctggttgcct ttagaacttg gcgaaacaac attaccctaa cctcatcgga aaaattgacc
    11161 gcactctttc aatacccaat tccgcaacgt tggagtattg ctcatttaca ccaagcattg
    11221 cttaaccaag agcctcactt gccggaaatt gattacctga caaccctctc aggttatgtg
    11281 cattggcaac tgaccgatca caaagtgtta gggattggcg atgcttccgg catgttcccg
    11341 atagatactg agttgaaatc ctacaatcca acaatgctgg ctcaatttga tcgagccatt
    11401 gccgactacc gtatgccttg gaaattggaa gcgattttgc cacaagttcg tgttgctggt
    11461 gaacaagcgg gcaaattaac cgaaaaaggt gcaaaattgt tagatccaac cgataatttg
    11521 caagctggca ttccactttg tccacctgag ggtgatgccg gaacaggtat gattgcaacc
    11581 aactgtatca aagaaaaaac cggtaatatt tctgccggca cctccgcatt tgcaatgatt
    11641 gtgttagaaa aagccctatc caaagcctat tcagagctgg atattgtgac gaccccggca
    11701 ggtaaattag tggcaatggc tcacgctaat aattgcacct ctgatattaa tgcgtgggtg
    11761 aatttattcg gcgaatgctt atcggttttt ggcgtaaata tctgcaccga agaactttat
    11821 gaaatgttat ttctccatgc cttgcaaggc gatgcagatt gtggagggct attatcctac
    11881 ggcttccact ccggtgaaca taatgtcggt ttatccgaag gctgtccggt tttcttgcat
    11941 ccaacgaatg cccattttaa cttagcaaac tttatgcgaa cccatctcta taccgctttt
    12001 ggtgcaatga aattaggaat ggacattctc attaaccaag aaaaagtgga aatttcccgt
    12061 attctcggtc acggtggtat atttaaaaca gaaggtgttg cacaaaaaat tctgtcttcc
    12121 gcactgaata ttccattggc taccgcaagt actgcttcaa atggcggagc ttggggaatt
    12181 gcattactgg cagactttct cagcgtatca gaccgttaca gtttagaaga atatttagat
    12241 aattgcattt tcaacaccac caaactcaat ctggttcaac cggataaaac aatgagtgaa
    12301 ggttatgaac gctttatgca acgttataag caaggcattc ctgtggtaga aaaagcgttg
    12361 tttttaaata cagattaaat aattataatt taagtatcac aagcggttat ttttgcaaaa
    12421 aacgaccgct tgttatttac atttgtacaa aaaataccta ctataaagac gcatttgtaa
    12481 aatgtgcatt gatatatcgc aagttttgtg tataggaaat gaactaatta ctgtgtcaat
    12541 cagtcccttt cttcatcgtt ataccctctt gcaaatccga ttaatctatc cttagttaag
    12601 gtgttttatg ttagcgattt ggcaaagttt taaacaaaat tatctaatca aatattggaa
    12661 tcctgttgca gcagtgatcg cagctggtat tatttcagct tattatttcg gcattactgg
    12721 cacttattgg gcggttacag gggaatttac ccgttggggc ggtcatctgt taaatgcttt
    12781 gggtgttgat gtttcgaact ggagctattt tcaactcatc ggcttagacg gcaccatctt
    12841 tacccgcatt gacggtgtga tgattctcgg tatgtttgcc ggctgtcttt ctgccgcatt
    12901 atgggcgaac aacgtcaaat ggcataatca gccacataaa aaacggatta tccaagcctt
    12961 gattggcggt gcgttagccg gtttcggagc ccgtttagca atgggctgta acctcgcctc
    13021 tctttttacc ggtattccgc aattctccgt ccacgcttgg tttttcacct ttgcgaccgc
    13081 catcggcact tactttgggg taaaagtgac tttattaccg atgtttagag tgaaattaga
    13141 gctgaaaaaa ggggcagcaa aaatcaaaga aaacgatccg aaacaagcta atcgccgttt
    13201 ttgggttggt atgctcattt ttatcactta tctttctgct tccctttatg taatgcaatc
    13261 ctcaatcaaa cttggttttg caatgctttg cggcttagcc tttggcttat tgattgaacg
    13321 agcccaaatt tgctttacct ccgctttccg tgacttatgg attaccggac gggcttatat
    13381 ggcaaaagca attattttcg gcattattgc cggcacaatc ggcgtgttct cttatattca
    13441 attaggtgtt tcacctaaaa ttttgtgggc tggcccaaat gccattatcg gcggattatt
    13501 attcggattt ggcattgtgc ttgccggcgg ctgtgaaacc ggctggatgt accgttcaat
    13561 ggaaggacag gttcatttta tgtgggtcgg cgtaggcaat gtagtcggtt caaccctgct
    13621 ggcttactac tgaggcgact tagctccggt gcttaccctt gattatgaaa aaatcaacct
    13681 actcaaagaa tttgggccgg ttggcggatt attcatcaat tatggcttat taattctttg
    13741 cttaatcgct gtagtttggt gggaaaaacg cttccttgcc aaagcgaaag caaaattagc
    13801 aactgcgtaa tctttttaac ttcaaccaac aagaggaaaa tgactatggc attcaccgtt
    13861 gtacaaaaac tagataaaga tccaaaagac atcacgcctg attacacctt agatacctta
    13921 ggcgaacctt gcccttaccc tgcgattacg atgttagaaa caatgccaca gctgcaaaaa
    13981 ggagagatat tggaactgtt aagcgattgt tcccaatcga ttaataatat tccgattgat
    14041 actaaaaatc acggctatac cctattaagc gtggaacaaa acggcactaa attacgctat
    14101 ttaattcagc gttaattgca aaaaattcgc acaaaacgac cgcttgtcgt aaaatagcaa
    14161 ctatttaaga gccttgtaac gcaaggctct tttattctaa gaggtaaaag aaaaatgaat
    14221 aaatacgctt tacttgcaat attttggttt attattggca tttatgcttt actttttcgt
    14281 gaaagcacta atgatatacc gccttttcca cattttgata aagtaagcca ttttgcctta
    14341 ttctttatcc agatctggtt atctgcaaac gcctttatcc gttcaaagaa agggatacct
    14401 tattttgggc taataatttt tgccttactc tatgctttca ccagcgaatg ggctcaggca
    14461 accttcacct caacccgaga aggttcttgg cttgatgggc tagcagatat gctaggagcc
    14521 tcactttcat tattgctggt aaaatattgc aaaaaataaa gcataaaaga ccgcttgtta
    14581 tatggtttag ccatactaca agcggtcatt ttttaccaaa attatgccat caactcatca
    14641 atcaattctt tcacactttt gattttgttg atttgtgaaa tgccattgcc caccgacaca
    14701 tagccattgt caaaatcccc ttctaacata cccaaacgca ttcctgtacc agcgttcatt
    14761 accttagcaa tctcactacg agttgcccca ttttcgctca tttcaaagca ttttttcgct
    14821 aatccagtcg gcagtgaacg gtagtaatgt ggttcggtac ggaataacag cagatcattg
    14881 gcatttgcct ccacaatcca gtttttcact ttttcgcttg cacggcattc ttcggtggcg
    14941 ataaatgccg tgccaatcca cacgccttca gccccaagcg ttaaggcagc ctgcaccgct
    15001 tttttatcgg caataccacc agccagcatt atcggcaaat ccaccttgcc cacaaattcc
    15061 gccagcacat taaaactgcc tacctctttc atcggcaaag taccgccctc atcaaaaccc
    15121 gtcagcacca aaatatctgc tcccaatgct tgggctttta aagcgtccgc caaattggga
    15181 ttaggcaaac ggcagatgat tttaatgcca gcagctttga atttggcgta aatctctggg
    15241 tcaagccagc cgttatccag caccacaggc acacgctctt caatgaataa atccaccatt
    15301 aacggaatca gcgaaaaatc ataagacaaa ataaatggta cgccaaaagg cttatcggtc
    15361 aatgccttaa ccttacgaat ctcgttacgc atacggtcaa gtacttcttc gttggaagtt
    15421 ggattggtgg tttgccctgc gtgtggggct aaaaaaccaa gcccaccagc ctcggcaacg
    15481 cttgctacca gatgagcgtc cgtcagccaa gacattggcg cttggacgat agggtgcttg
    15541 atatttaaga tttgggtaat gcggttcatt ggattttcct gtttgaataa aaagaattgg
    15601 acgtagttta atggttttgg atttgagagg gaatgcgtga aaatgggaag gtggttttcg
    15661 gatttggaaa attatcaatg ctaaaatact tgaaatacac acgccaatcc tcatatcaac
    15721 aaaattgaat at
//
LOCUS       DANLRW010000057        15603 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.057, whole genome shotgun sequence.
ACCESSION   DANLRW010000057 DANLRW010000000
VERSION     DANLRW010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15603
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.057"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            331..1521
                     /gene="malE"
                     /locus_tag="PXA71_001491"
     CDS             331..1521
                     /gene="malE"
                     /locus_tag="PXA71_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose/maltodextrin ABC transporter
                     substrate-binding protein MalE"
                     /protein_id="HDL5105597.1"
                     /translation="MKNKCVKFTLATLATLVLSGTVMAKMTEGKLVIWINGDKGYNGL
                     AEVGKKFEKDTGVQVLVEHPDRLEEKFAQVASTGDGPDIMFWAHDRFGGYAQSGLLAE
                     VNVSKEFKDKFVDFAWDAETYNGKIIGYPVAIEAISLIYNKDLVKEAPKSWEEIIELD
                     KKLKKEGKNAIMWNLSEPYFTWPIAASNGAYAFKFANGKYDPKDIGVNNEGAVKALQF
                     VVDMVKNKHISADMDYAVAEASFNKGQSALTINGPWSWGNIDKSGIKYGVTLLPTLNG
                     QASKPFVGVLSAGVNSSSPNKDLAKEFLENYLLTDDGLDAVNKDKPLGAVALKSYQEK
                     LAADPRIAATMANAKNGEIMPNIPQMSSFWYAEKSAINNAVTGRQSVKEALDDAHSRI
                     QKQQ"
     gene            1640..3178
                     /gene="malF"
                     /locus_tag="PXA71_001492"
     CDS             1640..3178
                     /gene="malF"
                     /locus_tag="PXA71_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalF"
                     /protein_id="HDL5105598.1"
                     /translation="MLTQTQSKSTHWLKYLLAGLVLLLDFYLVVLMYSQGEYLFAILT
                     LIILTSGVYIFTNKNTYAWRYVYPGITGMAIFILFPLVATIAIAFTNYSGSNQLSFER
                     AVSVLTEQRYFAGDKYQFTLYPQADNKYQIALTNPTTEQTFVSEPISLATGTNVVVTE
                     QNRPTGEVAPLKVITQNRAALQSMKVVLPNNNELTMSSLRQFSEQKPRYQFDEENKIL
                     LNNETGKRYQANDETGFFQSIDENGHWQSETLEPGYTVTSGFNNFIKIFTDEGIQKPF
                     VQIFIWTVIFSLLTVVFTVILGMVLACLVQWEALKGKAVYRVLLILPYAVPSFISILI
                     FKGLFNQSFGEINMILNQLFGISPEWFNDPLLAKVMILIVNTWLGYPYMMILCMGLLK
                     AIPADLYEASAMDGASTWQNFSKITFPLLLKPLTPLMIASFAFNFNNFVLIQLLTNGR
                     PDMIGTTTPAGYTDLLVSYTYRIAFEGSGTQDFGLAAAIATIIFLLVGGLALLNIKAT
                     KMEL"
     gene            3231..4121
                     /gene="malG"
                     /locus_tag="PXA71_001493"
     CDS             3231..4121
                     /gene="malG"
                     /locus_tag="PXA71_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001252048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter permease MalG"
                     /protein_id="HDL5105599.1"
                     /translation="MAIVQSKSVRYRVWATHFILICFLALIIFPLLMVIGISLRPGNL
                     AIGDIIPSQISWEHWQAALGFDVTHADGTVTPPPFPVLRWLWNSIKVATITSIGIVTL
                     STTCAYAFARMKFKGKKTILQGMLIFQMFPAVLSLVALYALFDRLGQYVPFLGLNTHG
                     GVIFAYLGGIALHVWTIKGYFETIDGSLEEAASLDGATPWQAFRLILLPLSVPILAVV
                     FILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLYPQNYLWGDFAAAAVLSAIPITL
                     VFLLAQRWLIGGLTAGGVKG"
     gene            4196..6253
                     /locus_tag="PXA71_001494"
     CDS             4196..6253
                     /locus_tag="PXA71_001494"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HDL5105600.1"
                     /translation="MKNALPYLCLFYTSSLFAQSWQHSHFSDFNDDLEKHFFQSQVQL
                     EKGSYPLRFKFGEQCYQPQQAIKLNQSVALVPCINEAPQLRLFRQGNYLAQIDLRSGT
                     PTPTISVEQQLQHNEAMFQSCPNWDKKPIEIDVSSTFAEGESVSDFYSGNTAIVKNGK
                     VTLMPNENASGLILLEKSNTENTATFDWKNATVYFVLTDRFYNGDPTNDHSYHRQKDG
                     MQEIGTFHGGDLKGLTEKLDYLQQLGVNVLWISSPLEQMHGWVGGGDKGDFPHYGYHG
                     YYHLDWTKLDANMGTEDDLSRFVQQAHQRGIRVLFDVVMNHTGYATLADMQEFNFGGF
                     YLTPDEISRTLGEKWTHWKPKSGQNWHSFNDFIRFNDNQAWQNWWGKEWVRADIADYD
                     SPKFDDLKMSLAALPDLKTESEQAVKLPEFFANKNTNAKTLPNAKVRDYLIGWLSDWV
                     RKYGIDGFRVDTAKHVEKSTWLVLKQSAQQALNEWQKANPNAGFNDRFWMTGEAWGHG
                     VFKSDYYQNGFDAMINFDFQDQAKQGLNCFAHIEPIYAEMNRKLSDFNVLSYLSSHDT
                     RLFFHSDSEQNIEKHKTAANLLLLSPGAVQIYYGDESGRTFGATGSDLIQGTRSDMNW
                     QELQQDPQKQALHQHWQKLTQFRQRHPAIGAGVHQLIKNDSYFAFKRVLNEDKVMVVW
                     AGN"
     gene            complement(6367..9093)
                     /gene="malT"
                     /locus_tag="PXA71_001495"
     CDS             complement(6367..9093)
                     /gene="malT"
                     /locus_tag="PXA71_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
                     /protein_id="HDL5105601.1"
                     /translation="MLIPSKLVCSFRLQNSIPRKRLIQELDKSCSYPVVLINAPAGYG
                     KTTLVSQWIENKKNIGWYALDEGDNNSDRFATYFSAALHSAINEEIDVLLEENRKANL
                     LALFNQLLIKAAAFSEHFYLAIDDYHIIENDEIHEALKYWIKHQPSNMTLILISRSIP
                     PLSIASLRVQEQLLEIDINQLMFDHQESTAFFQARLGSELNQQDVIALCNEVEGWPTA
                     LQLISLFAKNKSHTLQVPLQDIAKRLAKSNHFHINEYLADEVLNKVDEETRLFILRCS
                     VLHSMNESLVQAVTGEQNSRTKLESLEKQGLFLQQMANSKWQSSDDSWWKFHPLFASF
                     LNLCCQNELYAELPQLHQKAANAWLQLGYVTEALHHAMQLSDTGLLLNILSKHAWTVF
                     HQGELKLLEESLNCLDYAHLTEHTNLVLLKAWLVQSQHRHIEVGGILADFSRALTENK
                     IELSKTANAEFNVLRAQVAINSGDENTALQLASEALNDLSENAYYAHIVATSIIGEAH
                     HCHGNLAEALAMLQKAERMARQHHTYHNILWSQLQQSEILLAQGFSQAAYEMLDKASE
                     FVKENHLQKVPMYEFLLRSKGKILWEWYNLDKAESMAVAGMNALSKFEDKLQCLTLLT
                     KISLARGNLDNTARLLGEVEQLEHSHSYHHDWIANADQVRIFYWQMTNDVSAVRNWLI
                     QNPSPVSDKNHFTQVQWRNIARSRILLEEYHEAKAILDNLIETAEKFSLISDLNRALI
                     VRNRLYFLQGEKELAQQDLIQALKLTRQTNFISAFVIEGDVMAQQIRHLLQLNVLDEL
                     VLHKAQFILRNINQFYRQKFAHFDENFVNQLLKNPKVPELLKISPLTQREWQVLGLIY
                     SGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAISYTKELLMLMGYH"
     gene            9257..11626
                     /gene="malP"
                     /locus_tag="PXA71_001496"
     CDS             9257..11626
                     /gene="malP"
                     /locus_tag="PXA71_001496"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HDL5105602.1"
                     /translation="MTFNSIVEKYCRYFDVTDPKHFTLQQWYQVVAEGSLELIYSQPA
                     TKPTESRHVNYLSMEFLIGRLTGNNLMNLGYYEQIRDYLKQYQVELVDVLEQERDPAL
                     GNGGLGRLAACFLDSMATVGQNATGYGLHYQYGLFKQSFKEGMQKEAADTWARDSYPW
                     HRFNPSKTRHIGFGGKIKHIQADQYEWQPKLTIQGKAFDLPIVGYKNNIIQPLRLWQA
                     DSDQSFDFDAFNEGKFLSADKTIVNAAALTQVLYPNDNHQAGQKLRLMQQYFHCACSV
                     ADILDRHISEGYSLEDLAKRQVIQLNDTHPTLAIPELMRVLLDEHQFTWEQAWDICSN
                     TFAYTNHTLLPEALEQWDQRLFKQLLPRHYQIVEKINDIFHDKVQAEFGDDAKIWEKL
                     AVLFDYRVRMANLCVVTCFRVNGVAEIHSDLLVTDLFPEYHKLFPTKFCNVTNGITPR
                     RWIRQANPQLSDLLDRTLKQDWTHNLELLKGVEQYADDTGFREEYQRIKRNNKVVLAN
                     EIHKTLGLNVNPNAIFDVQIKRFHEYKRQHLNLLNIIATYQSLKANPNQDYTPRLFLF
                     SGKAAPGYYLAKNIIHAINNVADIINNDKQVNDRLQVAFLPDYRVSLAEKIIPAADVS
                     EQISMAGKEASGTGNMKLALNGALTLGTLDGANVEIADMVGEENVFIFGHTVESVREL
                     LAKGYQPKAYYNQDPILKNAVDFLATGKASNGDKEAFKLMLDSLLERDPFLVFADFDS
                     YRQAQEKIGVAYLDQETWLRSAILNTARLGAFSSDRSIKDYQQRIWLNR"
     gene            11708..13786
                     /gene="malQ"
                     /locus_tag="PXA71_001497"
     CDS             11708..13786
                     /gene="malQ"
                     /locus_tag="PXA71_001497"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL5105603.1"
                     /translation="MKITAKQYYRAGIMPYFFDERGVKKTASEKIKHSLFKAFNGNTQ
                     ARETPIPTVNIFYQHQPCFLPFHLADKKHPLTGTWQLQLENSNQIISGKIKARGITLP
                     QDLPLGYHQLQLKTVDKTFNCTIIIAPERCYQPQAVIEQKRLWGTFLQLYTLKSAHNW
                     GIGDFGDLKDFIQQIAPYQADFIGLNPIHSLFPANPNSASPYSPSSRRWLNIAYIDIN
                     QLAEFQQSDEAQTWFHSAEIQQQLSELRTQDWLNYEQIIPLKLKGLRFAFAKFQQNMT
                     ACAAPAFIEFVQKGGESLQVQATFDALHQHLSAQFADQWGWDFWEKAYQDYHSAAVQQ
                     FRETHKTDIEFYLWLQFVADQQLAECDAICRQQNMRIGMYRDLAVGVSPNGAETWNDK
                     QLYCLNASVGAPPDVLGPQGQNWGLTPMNPHVLKQQAYRPFIELVRANMSHCGALRLD
                     HIMSLLRLWWIPKGDSAVNGAYIRYPVDDLIAILALESQRHQCLIIGEDLGTVPKEIV
                     SKLKNAGILSYKIFYFEFDEQGKSRDLQHYPYQAMTTLSTHDLPTINGYWRGYDFELG
                     EKFGVYPNSNILAILKQDRVNAKAKILQRLQEHNVEIAPEISEQLNSPVNTAFIHCLQ
                     TYVANVSSGLFGFQPEDWLGMTEPVNIPGTSTQYANWRRRLSVNLEEIFTDKDIQALL
                     KEVNLIRKNQ"
     gene            complement(13851..15512)
                     /locus_tag="PXA71_001498"
     CDS             complement(13851..15512)
                     /locus_tag="PXA71_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HDL5105604.1"
                     /translation="MSEIALTVSLLSLVAVLGLWIGHIKIRGVGLGIGGVLFGGLFVS
                     HFMAQFDVKLDAHTLHFIQEFGLILFVYSIGIQVGPGFFASLKHSGLKLNGFAVLIVL
                     ISGILVILIHKFFNVPLPVILGIFSGAVTNTPSLGAGQQVLAELSAESVTEIMGMSYA
                     IAYPFGIIGILLSMWLIRILFRINIEAEAEAFNKQQNRSKDQLSTLNVRLTNPNIHGL
                     TLKQIPDFNLHEVAYSRLKRGNELSIPRVDTILQIGDILHLVGEESSLRKMQIILGEA
                     VDVSVSTKGTIYRSERAVVTNEKVFGKQIRQLMLKGKYDVVISRLNRAGVELVPTGDM
                     TLQFGDVLNLVGRQADIEMVMTIIGNAHSKLQQVQMLPIFIGIGLGVLLGSVPIYLPG
                     FPVALKLGLAGGPLVVALILARIGSFSKLYWFMPPSANLALREIGIVLFLAVVGLKSG
                     GRFLETLLSSEGVEWICYGAIITFVPLMIAGLIARMYNKVNYLTICGLLAGSMTDPPA
                     LAFANEIKEGNGAAALSYATVYPLVMFLRIMLPQVLAIMLWVSGG"
BASE COUNT         4817 a         3225 c         3001 g         4560 t
ORIGIN      
        1 tttttttagg ctgaatagtc gcctttttat ctaaagaaga aatcatccta aaatactttt
       61 ttttagggtt agagccatag ccataattat ttaaaaaacg ccaattcaga aaaattaaat
      121 aaattttgtg atcaacctct catttttaat gcctattttt gtgaagcaga tcacaaaatg
      181 ataaaaaatg ttacttagat catactttta gcttgggggg cgtagagcaa agggtgatct
      241 caaatagatt gtatagccca taatttgcca taatttaata aatgggttgt ttcatatccg
      301 tttcttttat ttaacttcaa ggagtttttt atgaaaaaca aatgtgtcaa attcacctta
      361 gctactcttg ctaccttagt tctttcagga acagtaatgg caaaaatgac ggaaggtaaa
      421 ctcgttatct ggattaacgg tgataaaggg tacaatgggc ttgccgaagt cggtaagaaa
      481 tttgaaaaag ataccggtgt tcaagtttta gttgaacacc cggatagact tgaagaaaaa
      541 tttgcacagg ttgcctcaac tggtgacggt ccggatatta tgttctgggc tcacgaccgc
      601 tttggtggtt atgcacaatc cggtttattg gctgaagtga atgtaagcaa agaatttaaa
      661 gataaatttg tcgattttgc ttgggatgct gaaacttaca acggcaaaat tatcggttat
      721 ccggttgcga ttgaagcgat ttcattaatt tataataaag atttagtgaa agaagcacca
      781 aaatcttggg aagaaattat tgagttagat aaaaaactca aaaaagaggg caaaaatgcc
      841 attatgtgga acttatccga gccctatttc acgtggccga ttgcggcttc aaacggagct
      901 tatgcattca aatttgctaa cggcaaatac gatccaaaag atattggtgt gaacaatgaa
      961 ggggcagtaa aagcactaca atttgtagtc gatatggtga aaaataaaca tattagtgcg
     1021 gatatggact atgccgttgc cgaagcctcc tttaataaag gacaaagtgc cttaaccatc
     1081 aatggtcctt ggtcttgggg caatattgat aaaagcggta ttaaatatgg tgtaacttta
     1141 ctcccaacat taaacggtca agcttctaaa ccattcgtag gggtgttaag tgccggtgta
     1201 aacagctcaa gcccaaataa agatttagcc aaagaattct tagagaatta tttactcacc
     1261 gacgacggtt tagatgcagt caataaagat aaacctttag gtgcggtggc gttaaaatct
     1321 taccaagaga aattagcggc tgatcctcgt attgctgcaa cgatggcaaa tgcgaaaaac
     1381 ggtgaaatta tgccaaatat tccgcaaatg tcttctttct ggtatgccga aaaatctgct
     1441 atcaataatg cagtgaccgg tcgtcaatcg gtgaaagaag cattagatga tgcacattca
     1501 cgcattcaaa aacaacaata attcttcatc attctgagtg ggttattatg acccactcta
     1561 tttttagatt caccctaaat acaataaaag tacagtaaaa gtaccgtaac aaaatgcagt
     1621 aaaaattcga ggtgctgtta tgctaactca aactcaatcc aaatccactc attggctcaa
     1681 atatctctta gccggattag tcttgctcct tgacttctat cttgttgtct taatgtactc
     1741 acaaggtgaa tatctttttg ctattttaac gctgattatt ctaacttccg gtgtctatat
     1801 ttttaccaat aaaaatacct atgcttggcg gtatgtttac cctggcatta ccggaatggc
     1861 aatttttatt ttgtttccgc tggttgcgac tattgcaatt gcgtttacca actatagtgg
     1921 ttctaatcaa ttatcctttg aacgagcggt atccgtctta actgaacaac gctattttgc
     1981 cggagataaa tatcaattca ccctttatcc gcaagcagat aataaatatc aaattgcatt
     2041 aaccaatccg acgacagagc aaacttttgt gtcagagccg atttcattgg ctaccggaac
     2101 gaatgtggtt gtaaccgagc aaaacagacc aactggcgaa gtcgctcccc ttaaagtgat
     2161 tacgcaaaat cgggccgcac ttcaatcaat gaaagtggtt ttaccgaata ataatgaact
     2221 gacaatgagc tcattacgtc aattctccga gcaaaaacca cgctatcaat ttgatgaaga
     2281 aaataaaata ttactcaata atgagactgg caaacgttat caagcaaatg acgaaaccgg
     2341 tttcttccaa tcgattgatg aaaacggtca ttggcaaagc gaaacacttg aaccaggtta
     2401 tactgtcaca tcaggcttta ataacttcat taaaattttt accgatgaag gtattcaaaa
     2461 accttttgtc caaatattta tttggacggt gatcttctct ttattaaccg ttgtctttac
     2521 cgttattctc ggtatggttc ttgcctgttt ggtacaatgg gaggcattaa aaggtaaagc
     2581 agtctatcgt gtcttattga ttttacctta tgccgtacca tcatttattt cgattctgat
     2641 ttttaaagga ctatttaacc aaagttttgg tgagatcaat atgattttaa accaactatt
     2701 cggcatcagc cctgaatggt ttaacgatcc gctccttgcc aaagtgatga tcttaattgt
     2761 caatacgtgg ttaggttatc cttatatgat gattttatgt atggggttac tcaaagctat
     2821 tccggctgat ttatatgaag cctccgcaat ggacggtgct tccacttggc aaaacttcag
     2881 taaaatcact ttcccattac tgttaaaacc acttactccg ttaatgattg cttcgtttgc
     2941 atttaacttt aataactttg tattaattca actattaaca aacggtcgcc cggatatgat
     3001 tggaacaacc actccagccg gttataccga tttattagtc agctacacct atcgtattgc
     3061 ctttgaagga agtggtacgc aagatttcgg cttagcagcc gccatcgcaa ccattatttt
     3121 cttattagtc ggtggcttgg cactcttaaa tatcaaagca accaaaatgg aattataaaa
     3181 gcgggaggga tttaacaatc ccgaccccaa actaacttta ggagttatat atggcaattg
     3241 ttcaatctaa atctgtgcgt tatcgggtat gggcaaccca tttcatctta atctgtttcc
     3301 ttgccttaat tattttccct ttattaatgg tgattggcat ttcgttacga ccgggaaatc
     3361 tggctatcgg tgatattatt ccaagccaaa tttcgtggga acattggcaa gccgctcttg
     3421 gttttgatgt tacacacgcc gatggtacag tcacaccgcc gccattcccg gtgctacgct
     3481 ggttatggaa ctccatcaaa gtggcaacaa ttacctctat cggcattgta accttatcta
     3541 cgacctgtgc ttatgcattt gcccgaatga aatttaaagg caaaaaaacc attctacaag
     3601 gtatgctgat tttccaaatg ttcccggcag tgctttcctt agttgcctta tatgcgttgt
     3661 ttgatcgtct tgggcagtat gtaccgtttc ttggtttaaa cacacacggt ggtgttattt
     3721 ttgcctactt aggcggaatt gccttacacg tttggacaat caaaggctac tttgaaacga
     3781 ttgatggttc attggaagaa gccgcttccc ttgatggtgc aaccccgtgg caagcgttcc
     3841 gattaatctt attaccgctt tcagtgccga ttttggcggt agttttcatt ctttcattta
     3901 ttgccgccat taccgaagta ccggttgcct cactcctatt gcgtgatgta aacagctaca
     3961 ccctagccgt tggtatgcaa caatacctct atccgcaaaa ctatttatgg ggtgacttcg
     4021 cagcagcggc ggtcttatcc gcaattccga ttacgctggt cttcttattg gcacaacgct
     4081 ggttaatcgg tggtttaact gccggcggcg tgaaaggcta gtttgcaaaa aattctctaa
     4141 aaacgaccgc ttgtcgagct gatactgcgg tcgtcaatct ttattagggc tgtctatgaa
     4201 aaatgcgtta ccttatctct gcttattcta tacctcaagc ctttttgccc aatcttggca
     4261 acattcccat ttttctgatt ttaacgatga tctcgaaaaa catttttttc aatcccaagt
     4321 tcaattggaa aaagggagct atccgcttag gttcaaattt ggcgaacaat gttatcaacc
     4381 ccaacaagcg ataaaattaa atcaatcggt tgcgttagtc ccttgtataa atgaagctcc
     4441 acaactgcgg ttgtttcgtc aaggcaacta tctggcacaa attgatctgc gaagcggcac
     4501 tccgacaccc acaatcagcg tagaacagca gctacagcac aatgaagcga tgtttcaaag
     4561 ttgcccgaat tgggataaaa aaccgattga aattgatgtt tcttccactt ttgccgaagg
     4621 cgaatcggtt agcgattttt attcaggcaa caccgctatc gttaaaaacg gcaaagtcac
     4681 cttaatgccc aatgaaaacg caagcggtct gattttgctg gaaaaaagca ataccgaaaa
     4741 tacggcaacg tttgattgga aaaatgccac cgtctatttt gtgctgaccg accgctttta
     4801 taacggcgat ccgaccaatg accacagcta ccaccgccaa aaagacggaa tgcaagaaat
     4861 cggcaccttt cacggtggtg atttaaaagg attaaccgaa aagctcgatt acctacaaca
     4921 acttggggta aacgtattgt ggattagctc tccgttagaa caaatgcacg gctgggttgg
     4981 cggcggtgat aagggggatt ttccgcatta tggctatcac ggttactatc atttagattg
     5041 gacgaaatta gatgccaata tgggtactga agacgattta agtcgctttg ttcaacaagc
     5101 ccaccagcgt ggtattcggg tgctatttga tgtggtgatg aaccataccg gctacgcgac
     5161 gcttgccgat atgcaggagt ttaactttgg cggattttac ttaacaccgg acgaaattag
     5221 ccgcacatta ggcgaaaaat ggacacactg gaagccgaaa tcaggacaaa attggcacag
     5281 tttcaatgat ttcattcgct ttaacgataa tcaggcttgg caaaattggt ggggaaaaga
     5341 atgggttaga gctgatattg ccgattacga cagccctaaa tttgatgatt taaaaatgtc
     5401 gctcgctgcc cttcctgatc taaaaaccga gagcgaacaa gcggtcaaat tacctgaatt
     5461 ttttgcaaat aaaaatacca atgccaaaac attaccaaac gccaaagtgc gtgattattt
     5521 aattggttgg ttatccgatt gggtcagaaa atatggcatt gacggttttc gggttgatac
     5581 cgccaaacac gttgaaaaat ccacgtggct ggtattaaaa caatcggcac aacaagcctt
     5641 aaacgaatgg caaaaagcca atccgaacgc cggttttaac gatcgctttt ggatgacagg
     5701 agaagcgtgg ggacacggcg tgttcaaaag tgactattat caaaacggtt ttgatgcaat
     5761 gatcaatttc gattttcaag atcaggctaa acaagggtta aattgctttg cccatattga
     5821 gccgatttat gccgaaatga atcgcaaatt aagcgacttc aatgtgttga gctatttatc
     5881 ttcacacgat actcgattat ttttccattc ggatagtgaa caaaatatcg aaaaacacaa
     5941 aaccgccgca aatttgctgt tgctttcacc cggtgcagtg caaatctatt atggtgatga
     6001 aagtgggcgg acatttggtg cgaccggttc agacctgata caaggcaccc ggtcggatat
     6061 gaattggcaa gagttgcagc aagatcctca gaaacaggca ttgcatcaac attggcaaaa
     6121 attgacacaa ttccgccaac gccatccggc tattggcgca ggtgtccatc aactcatcaa
     6181 aaatgatagc tactttgcat ttaagcgtgt gttgaatgaa gataaagtga tggtggtttg
     6241 ggccggaaat taaatctact ttagcttcaa gttttctctc ttctggggaa aacttgaagc
     6301 cggttcgggg aaacaagttg caaaaaatta ctaaaaatag accgcttgtt ccccatgagc
     6361 ttgtgatcaa tgatacccca tcaacatcag cagttctttc gtatagctga ttgcttcgtt
     6421 acgattcgtc acaccgattt tctgataaag atttcggata tgggttttaa tcgtggttgc
     6481 agccacttgc aattcatctg aaatttgttc attgctatat ccggagtaaa tcaaacccaa
     6541 tacttgccat tcccgctgag tgagcggact aatttttaag agttccggca ctttcggatt
     6601 tttcaataat tgattcacaa agttttcatc aaaatgggca aatttttggc gataaaattg
     6661 attgatgttg cgtaaaataa actgtgcttt gtgcaatacc agttcatcta gcacattaag
     6721 ttgcaataaa tggcggatct gctgtgccat tacatcccct tcaatcacaa acgcactgat
     6781 aaaattcgtt tggcgggtga gttttagtgc ctgaattaaa tcttgctgag ccaattcttt
     6841 ctcgccttgt aaaaaataaa gccggttacg aacaattaat gcgcgattta aatcgctaat
     6901 cagagaaaat ttttcagccg tttcaattaa attatctaaa atggctttcg cctcgtgata
     6961 ttcctcaagc aagattcgag accgtgcaat atttcgccat tgcacttggg taaaatgatt
     7021 tttatctgaa accggtgagg ggttttgaat taaccagttc ctcaccgcag aaacgtcatt
     7081 ggtcatctgc caataaaata tacgtacctg atcggcgttg gcaatccaat cgtggtgata
     7141 agaatgagaa tgttctaatt gttcgacctc gcctaataat cgggcagtgt tatccaaatt
     7201 gcctcgagcc aacgagatct tcgtgagtaa agttaagcat tgtaacttat cttcaaattt
     7261 agataaggca ttcattccgg caactgccat tgattcagct ttatctaagt tataccattc
     7321 ccataaaatc ttgcctttag aacgtagcaa aaattcatac atcggcactt tttgtagatg
     7381 gttttctttc acaaactcgc ttgctttatc taacatttca taggctgctt gtgaaaaccc
     7441 ttgggcaagc aaaatttcag attgttgaag ctgtgaccac aaaatattgt ggtaagtatg
     7501 atgctgacgt gccatacgct ctgctttttg caacattgct aatgcttctg ccagattgcc
     7561 gtggcaatga tgagcttcgc caataataga cgttgcaaca atatgagcat aataggcatt
     7621 ttctgaaaga tcgtttaacg cttcagacgc taattgaagt gcggtattct catcaccgga
     7681 attgatagca acttgtgccc gtagcacatt aaattccgca ttggcagttt tgctcaattc
     7741 aattttattt tcagttaatg cacgagaaaa atccgctaaa ataccaccta cttcaatatg
     7801 gcggtgctgg ctttgtacca accaggcttt gagtaacacc aaattagtat gttcggttaa
     7861 atgggcgtaa tctaagcaat ttaagctctc ttccaataat ttgagttctc cttgatgaaa
     7921 caccgtccaa gcgtgtttgc tcaaaatatt gagtagtaat ccggtatccg ataactgcat
     7981 tgcgtgatgt aaggcttctg taacatagcc taattgtaac cacgcattcg ccgccttttg
     8041 atgcagttgc ggtaattcag catataactc attttggcaa cataaattta aaaaggaagc
     8101 aaaaagcgga tggaatttcc accagctatc atcactactc tgccacttac tgtttgccat
     8161 ttgttgtaaa aacaaacctt gcttttcgag agactctaat ttggtgcgac tgttttgctc
     8221 ccctgtaaca gcctgcacta aagactcatt cattgaatgc aaaaccgaac aacgcaaaat
     8281 aaacaaacga gtctcttcat cgactttatt aagcacttca tcggctaaat attcgttaat
     8341 atgaaaatgg tttgatttgg ctaaacgttt ggcaatatct tgcagtggta cttgtagcgt
     8401 gtgtgattta ttttttgcaa aaaggctaat tagctgaagg gctgtgggcc acccttcaac
     8461 ttcgttacac agtgcgataa catcttgctg atttaactcc gaacctaatc ttgcttgaaa
     8521 aaaagcggta ctttcttggt gatcaaacat taactggtta atatcaattt ccaataattg
     8581 ttcttgcact cttaaactgg caatacttaa cgggggaatt gatcgagaaa tcaagataag
     8641 cgtcatatta gacggttgat gtttaatcca atattttaat gcttcgtgaa tttcatcatt
     8701 ttcaataata tgataatcat caatagcaag ataaaaatgc tctgaaaatg ccgcggcttt
     8761 aatcaataat tgattaaata aagctaataa attagcttta cgattttcct ctaacaatac
     8821 gtctatttct tcattgattg ctgaatgcaa tgccgcacta aaataagtgg caaaacgatc
     8881 tgaattatta tcgccttcat ctaacgcata ccagccgata ttctttttat tttcaatcca
     8941 ttgggaaacc agagtggttt tgccataacc tgccggtgca tttatcaata cgaccggata
     9001 actgcaagat ttgtctaatt cttgaattaa acgttttcga ggaatgctgt tttgtaatcg
     9061 aaaagaacaa acaagttttg atggtattaa cataataaat tcaattttct ctcataacaa
     9121 aatagggatg atatatccac catttgtgtt ctcactactt ccttataatc ataccataca
     9181 agatgattat tgggatgatt tgattttatt tggattttac ataatagcga cattcatctt
     9241 taaccggggg tttcctatga catttaattc tattgtagaa aaatactgtc gctactttga
     9301 tgtgacagat ccaaaacact ttaccttaca gcagtggtat caagttgttg ctgaaggttc
     9361 ccttgagcta atttatagcc agcctgcaac caaaccgaca gaatcacgcc acgtgaacta
     9421 cctctcaatg gagttcttaa tcggtcggtt aaccggcaat aatttaatga atttaggtta
     9481 ttacgaacaa attcgtgact atcttaaaca atatcaagtt gaattagtag atgttttaga
     9541 acaagagcgt gatccggcat tgggtaatgg cggattaggt cgtcttgctg cctgcttttt
     9601 agattcgatg gcaactgtcg gacaaaatgc aaccggctat gggcttcatt atcaatatgg
     9661 tctgtttaaa caaagcttca aagagggaat gcagaaagaa gcagcggata cttgggctcg
     9721 tgacagctac ccgtggcatc gttttaatcc gtctaaaacc cgccatatcg ggtttggtgg
     9781 aaaaatcaaa catatccaag ccgatcaata tgaatggcag cctaaattga ccattcaagg
     9841 caaagccttt gacttgccga ttgtaggtta taaaaacaac atcattcaac cattacgttt
     9901 atggcaagca gatagtgacc aatcttttga ttttgatgcc tttaatgagg gtaaattttt
     9961 aagtgccgat aaaacgattg tcaatgcagc cgcactaact caagtgctgt atccaaacga
    10021 caaccatcaa gccggacaaa aattacgctt aatgcagcaa tacttccatt gtgcctgctc
    10081 ggttgccgat attttagatc gtcacattag cgaaggttat tcgttagaag atttagcaaa
    10141 acgccaagtt attcaactca atgataccca tccaacgctc gctatacctg aattgatgcg
    10201 tgtactgtta gatgaacatc aattcacttg ggagcaggct tgggatattt gcagcaatac
    10261 ctttgcttac actaaccata ccttattacc tgaagcactt gaacaatggg atcaacgcct
    10321 atttaagcag ctattacctc gccattatca aattgtggaa aaaatcaatg atattttcca
    10381 cgacaaagta caggcagaat ttggtgatga tgcaaaaatt tgggaaaaat tagccgtgct
    10441 atttgattac cgtgtgcgta tggcaaacct ctgcgttgtc acctgcttcc gtgtaaacgg
    10501 cgttgcggaa attcactccg atctcttagt gaccgatcta ttcccggaat accacaaatt
    10561 attcccaaca aaattctgca atgttactaa cggcatcaca cctcgccgct ggattcgaca
    10621 agctaatcca caattaagtg atttattgga tcgtacctta aaacaagatt ggacacacaa
    10681 tctggaatta ttaaaaggcg ttgaacaata tgcggatgac accggtttcc gtgaagaata
    10741 tcaacgcatt aaacgcaata acaaagtggt tttagccaat gaaatccata aaacattagg
    10801 gttaaatgtc aatcctaatg cgatttttga tgtgcaaatt aagcgtttcc acgaatataa
    10861 acgccaacat ttgaatttgt taaacattat tgcgacctat caatcgctaa aagctaaccc
    10921 gaaccaagac tacacaccac gtctattcct attctcgggc aaagctgcac cgggttatta
    10981 tttagcaaaa aatattattc acgctattaa taatgtggca gatattatta ataacgacaa
    11041 gcaggtaaat gatcgactac aagtggcatt cttaccggat tatcgagtca gtcttgcgga
    11101 aaaaattatt ccagcagctg atgtatcaga acagatttca atggcaggta aagaagcctc
    11161 cggtaccggt aatatgaaat tggcactcaa cggcgcatta accttaggta cgctagacgg
    11221 tgccaatgtt gaaattgctg atatggtcgg tgaggagaat gtctttatct tcggtcacac
    11281 cgtagaaagc gtgagggaat tattagcaaa aggctaccaa ccgaaagcct actataacca
    11341 agatccgatt ctgaaaaatg cggttgattt cttagccaca ggaaaagcct ctaacggaga
    11401 taaagaggca ttcaagctga tgttagatag cctgttggaa cgagatcctt tcttagtctt
    11461 tgccgacttt gatagctatc gccaagcaca agagaaaatt ggtgtagcct atttagatca
    11521 agaaacttgg ctgcgtagtg caattttaaa tactgctcgt ttgggtgcat ttagctcaga
    11581 ccgctcaatt aaagattatc aacaacgtat ttggttgaat agataataaa ttcgggcgac
    11641 ttctacaata aaggaagtcg cctattttct gctgtatttc atatgtattt atatatggag
    11701 agaaatgatg aaaataactg ccaaacaata ttatcgggct ggaattatgc cctatttttt
    11761 cgatgagcgt ggtgtaaaaa aaacagcatc tgaaaaaata aaacattcgt tattcaaagc
    11821 ctttaacggc aatactcaag caagagaaac acctatccct acggtcaaca ttttttacca
    11881 gcaccaaccc tgttttttac cttttcattt agcggataaa aaacatccgt taaccggtac
    11941 ttggcagcta caactagaaa attcaaacca aattatttcc ggcaaaatta aagcaagggg
    12001 aattacatta cctcaagatt tgcccttagg ttatcaccaa ttacagctaa aaacggtaga
    12061 taaaaccttt aattgcacca ttattatcgc tccggaacgc tgctaccaac cacaagccgt
    12121 cattgaacaa aaaagattgt ggggaacctt cctacaacta tacaccttaa aatcagccca
    12181 caactggggg attggcgatt ttggcgattt aaaagacttc attcaacaga ttgcccctta
    12241 ccaagcagat tttatcggct tgaacccgat tcactcactt tttccggcaa acccgaattc
    12301 tgccagccca tacagtccat cctctcgccg atggctgaat attgcttaca ttgatatcaa
    12361 tcagctagcg gaatttcaac aaagtgatga agcacaaact tggtttcatt ctgctgaaat
    12421 ccaacaacaa ttatcagaat tacgcactca ggattggttg aattacgagc aaatcattcc
    12481 gttgaaattg aaagggctac gctttgcttt cgcaaaattt cagcaaaata tgaccgcttg
    12541 cgctgcccct gcttttatcg aatttgtaca aaaaggtggt gaaagcttac aagttcaagc
    12601 cacatttgat gcccttcatc agcatctatc ggcacaattt gccgaccaat ggggctggga
    12661 tttctgggag aaagcctacc aagactacca ctccgcagcc gtgcagcaat ttagagaaac
    12721 gcataaaacc gacatagaat tttacctttg gttacaattc gttgccgatc aacagctagc
    12781 agaatgtgat gctatctgcc gtcagcaaaa tatgcgtatt ggtatgtatc gcgatctcgc
    12841 cgttggcgtc agcccgaatg gtgcagaaac gtggaatgac aaacaacttt attgcttaaa
    12901 tgcctctgtc ggcgctccgc ctgatgtatt aggtccgcaa ggacaaaact ggggcttaac
    12961 cccaatgaat ccgcatgtat taaagcaaca agcctaccgt ccgtttattg agttagtcag
    13021 agctaatatg agtcattgcg gtgcattacg ccttgaccat attatgtctt tactccgttt
    13081 atggtggatc cccaaaggcg atagtgcggt taatggtgct tatattcgtt atccagttga
    13141 tgatttaatc gcaattttgg cacttgaaag ccaacgccac caatgcctaa ttatcggtga
    13201 agatttaggt actgtgccaa aagaaattgt gagcaagctc aaaaatgcgg ggattttatc
    13261 ttacaaaatt ttctattttg aatttgatga acaagggaag agtcgagact tacagcatta
    13321 cccttaccaa gcaatgacca cattaagcac ccacgattta ccgactatca atggttattg
    13381 gcgtggctat gattttgaat taggcgaaaa attcggcgtc tatcctaatt cgaatatttt
    13441 ggcaatcctt aagcaagatc gagtcaatgc caaagccaaa atcttacaac gcttacaaga
    13501 acataacgta gagatcgcac ctgaaattag cgagcaactt aattctccgg tgaataccgc
    13561 atttattcac tgtttacaaa cctatgttgc aaatgtaagc agcggattat tcggcttcca
    13621 acccgaagac tggttgggta tgactgagcc ggttaacatt ccgggaacca gtacacaata
    13681 tgcaaactgg cgacgtcggc ttagtgttaa cctcgaggag atcttcacag ataaagatat
    13741 tcaagcctta ttaaaagaag ttaatttaat ccgtaaaaat caataaaagt tagataagaa
    13801 aaaaggcgac tttccgtcgc cttttgggct tatatgcttg atgtctatct ttatccacct
    13861 gaaacccaca acataatcgc tagcacttga ggtagcataa tacgcaaaaa cattactagt
    13921 gggtaaacag ttgcatagga taacgctgca gcgccatttc cctctttaat ttcattggca
    13981 aaagcaagcg ctggaggatc agtcattgag ccggcaagta atccacaaat cgttaaatag
    14041 tttactttgt tatacattct ggcaatcaat cctgctatca tcaatggaac aaaagtaata
    14101 atcgccccat agcatatcca ctcaacgccc tcactgctta atagcgtttc gagaaatcta
    14161 ccgccagatt ttaaaccaac taccgctaaa aacagtacaa taccgatttc acgcaatgca
    14221 agattggcac ttggtggcat aaaccagtag agtttactga aactaccaat tcttgcaaga
    14281 ataagagcaa ccaccagtgg tccaccagcc aagcccagct ttaacgcaac agggaaaccc
    14341 ggtaaataaa tcggtacaga accaagtaat actcccaaac cgatcccgat aaatattggc
    14401 aacatttgga cttgttgcaa ctttgagtgc gcattgccga taatcgtcat taccatttca
    14461 atatcagctt gccgccctac taaattgaga acatcaccaa attgtaacgt catatcacct
    14521 gttggtacta attctacacc ggctcgattt aaacgagaaa tgacaacatc gtatttgcct
    14581 ttaagcatta gctgacgaat ttgtttcccg aagacttttt cattcgtcac tacagcacgt
    14641 tcagaacggt aaatcgtgcc tttggttgag acagatacat ctactgcctc acctaaaata
    14701 atctgcattt ttcgtaatga ggattcttca cctactaagt gtaaaatatc tcctatctgt
    14761 agaatcgtat ctacacgtgg aatagaaagc tcattccccc gttttaagcg tgaataagct
    14821 acttcgtgca aattaaaatc aggaatttgt ttcaacgtta aaccgtgaat atttggatta
    14881 gtcagacgga catttaaggt actaagttga tctttacttc tattttgctg tttgttaaaa
    14941 gcctctgctt ccgcctcaat attgattcga aataaaatcc gaatcagcca cattgaaagt
    15001 agaattccga taatgccgaa cgggtaagca atcgcataac tcattcccat aatttcagtt
    15061 acactctcag cgcttaactc agccaatacc tgttgacctg ctcctaaaga aggggtattg
    15121 gttacagccc cggagaaaat gcctaaaatc acaggcaaag gaacattgaa gaatttatga
    15181 ataagaataa ctaaaatacc gctaatcagt acaatcagta ccgcaaaacc attgagtttt
    15241 aagccagaat gttttagtga ggcaaagaat ccaggtccta cttgaattcc aattgaataa
    15301 acaaataaaa tcagcccgaa ctcttgaata aaatgaagcg tatgggcatc gagcttcaca
    15361 tcgaattgcg ccataaaatg ggagacaaac agcccaccaa ataacactcc ccctatacct
    15421 agccccacgc ctctgatttt aatatggcca atccataagc ctagaacggc cactaaagat
    15481 aataaactga cagtaagtgc aatttcgctc attacagcct ctctttaata tgaaatacct
    15541 caaaaatggt atccaattct accaaatctc aaaaacgaaa aatgagatct atgtcaaaaa
    15601 aat
//
LOCUS       DANLRW010000058        15320 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.058, whole genome shotgun sequence.
ACCESSION   DANLRW010000058 DANLRW010000000
VERSION     DANLRW010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15320
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.058"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            121..969
                     /locus_tag="PXA71_001499"
     CDS             121..969
                     /locus_tag="PXA71_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL5105605.1"
                     /translation="MEKKALFRGFLLSTVALAVAACGNLSKVSDEGTTENPVFPKISE
                     SEFNHDGSQFGSWPNWENVRQIEKGMNKDQLYNLIGRPHFEEGLYGVREWDYAFNYRE
                     NGVHKICQFKILFDKNMNAQSFFWYPNGCNGNSSFALTGDFLFDFDKATLTTKGKEVV
                     DNVAQQLKASKAQQVKVAGYTDRLGSAAYNLDLSQRRSNTVKARLVQQGVTAQIEAVG
                     YGKANQVKACDGETGQALKDCLRPNRRVEISANCGVMKQNEGGNVAGPNGPAPLYQTP
                     AYDGSK"
     gene            1057..1875
                     /locus_tag="PXA71_001500"
     CDS             1057..1875
                     /locus_tag="PXA71_001500"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HDL5105606.1"
                     /translation="MNYQAIAFDLDGTLLSSNATILESSKEAIKKVREKGIKVYFVTG
                     RHHTAVRPYYVELGLDTPVVCCNGTYVYDFKNEKVLSGNPLSAEIASKLVNDAQAQGI
                     HTAVYFEDAMTYESLNIHFTKFQKWVESCAPEVRPNVYQVENFQQEIDKGVTVWKVLI
                     SDPDLAKMQKFVEKLPPDQVSPEWSWVDRVDITSVGNSKGARLAEVLKTEGIDLQKVI
                     AFGDNFNDVSMLETVGLGIAMGNSEPDIQQKAKKTIGSNNEDSIANELKAQFNL"
     gene            1878..3569
                     /gene="narQ"
                     /locus_tag="PXA71_001501"
     CDS             1878..3569
                     /gene="narQ"
                     /locus_tag="PXA71_001501"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HDL5105607.1"
                     /translation="MIKAKYSIARRIGLYFLIMIGFASIISGISLGIMWSNKSDASLI
                     NVSGSLRMQSYRLLSEMDSKKALLPERLLEYHRTLHATELSSLKQSVLLPDSVIESYQ
                     QLLKDWYEMQSYVAQGDKVNYASHIEDYVQRVDDFVFRLQEFAELKLKIATGVIAIAM
                     LLIIALAYIGVWYTRKKIIGPLRQLVKASWQIQNKDFDHVKLAVNEPNELGLLSSTFT
                     EMSNELLKLYTSLEDKVQDKTRRLLAVNRSLLVLYQCSQLLTAKPINKEVLNQVLKTV
                     FDNEHLLGIDLQVYGAEYWNVSIDNKPSLDWVSAEIAIENEKLGILSWKPSLVCPGER
                     LIQNVSEMIGRSLYVVQMQKQQQQLVLMEERAIIARELHDSLAQSLTFFKIQVSLLKL
                     AKTDEKRNEILTVFEKALNDAYSQLRELLTTFRLTIQEANLQQALEKILESLRPKTSA
                     QIRLSCKLPSHMFNAQQQVHVLQIVREAVINAIKHSQATEINVIAETNDDGEHCLTIQ
                     DNGVGLAAHTQPEGHYGLTIMQERAAELKAEFSIENVESGGVKVQVLLPSMISKR"
     gene            3620..4138
                     /locus_tag="PXA71_001502"
     CDS             3620..4138
                     /locus_tag="PXA71_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL5105608.1"
                     /translation="MQFRKAVEADFETILAIYNQAIPTHQITADLELATTQNRRKWFD
                     FHLETAQYPIWVVEDEKGIAGWFSFSPFYERPAFLHTSEISIYLDRYSKGKGYGSKII
                     EFMQAEMLNHNIHTLMAYVFELNTVSQNLMRKHGFEQWGRFPNIANMGKDEKGEDKWR
                     TLLMMSYQKGIE"
     gene            4181..4780
                     /gene="rdgB"
                     /locus_tag="PXA71_001503"
     CDS             4181..4780
                     /gene="rdgB"
                     /locus_tag="PXA71_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HDL5105609.1"
                     /translation="MEKTKIVLATSNADKVKEMADVLSQFGFEVVAQSEFGIESPEET
                     GLTFVENALIKARFAAKMTGLPAIADDSGLSVMALGGEPGLYSARYAGEQATDADNRQ
                     KLLAKMQGQENRLAKFVSCIVFLKHETDPTPYIASGECFGEILTEERGENGFGYDSLF
                     FYPPKACTFAELETKEKKAISHRAIALEQLKQQLAGENK"
     gene            4777..5097
                     /locus_tag="PXA71_001504"
     CDS             4777..5097
                     /locus_tag="PXA71_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjQ family protein"
                     /protein_id="HDL5105610.1"
                     /translation="MIITTTPTIEGKQIVEYKGLVFGEVVSGANFIRDFLAGITDIIG
                     GRSGAYESKLNGARKEALAELAKEAQKVGANAVVGVSMEYQSMGGDKGMFIVVATGTA
                     VVIR"
     gene            5101..5553
                     /locus_tag="PXA71_001505"
     CDS             5101..5553
                     /locus_tag="PXA71_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HDL5105611.1"
                     /translation="MQFEQHFEANFWQNKSLLEMNDAEWEALCDGCGKCCYRKYIQGR
                     GRRERLYYTSVACNLLDVNTGRCMNYSNRFKIESDCTKLTKKNLPDFGWLPKTCAYRL
                     LYEGKPLFDWHPLISKDPDSVKNAGMLIANGIHEKDVIDWFEFVIDEV"
     gene            complement(5594..6175)
                     /gene="lpcA"
                     /locus_tag="PXA71_001506"
     CDS             complement(5594..6175)
                     /gene="lpcA"
                     /locus_tag="PXA71_001506"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HDL5105612.1"
                     /translation="MYLEQIKAELQEAADVLDKFMSDEKNIKLIQDAAMLIANSFKQG
                     GKVISCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFS
                     RYLEAVGQKGDVLFGLSTSGNSKNVLNAIKVAKEKGMKVIAMTGKDGGQMAGLADVEI
                     RVPHFRYADRIQEIHIKVIHILMMLIEFEMEKA"
     gene            6484..7443
                     /locus_tag="PXA71_001507"
     CDS             6484..7443
                     /locus_tag="PXA71_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HDL5105613.1"
                     /translation="MVVNPESFEQIIGQSVKIKEVVEQAKKFANLDAPLLIQGETGTG
                     KDLFAKSCHHFGSRRMQKFIAVNCAGLPAEEAESEMFGHRGNGVESVGFFEYAHGGTV
                     LLDSISELSLEMQAKLLRFLNDGSFRRVGEDQEIQVNVRVICTSLQPLSLLVEKGKVR
                     EDLFHRLNVLTLNLPPLRDRKEDIPLLADYFIAQISNQLGVSKLEYDNVFLQALQNYH
                     WRGNLRELYNALYRACTLSHSYRLAVKDLHLPRDMEAMIEVREEATLEEMMSQYEAQL
                     LHQFYAEYPSTRKLAQRLGLSHTAVANKLRQYGLTKNGNSKDE"
     gene            7436..9187
                     /locus_tag="PXA71_001508"
     CDS             7436..9187
                     /locus_tag="PXA71_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5105614.1"
                     /translation="MNKLAVIFSVCFANLGLNSTAYAAPSIPQELLENSLVYCTTSSG
                     FSFNPQKSDVSSNMNVVTEQIYDKLVEFNPKKNRLEPALAESYSISDDGLVITLRLRK
                     NVAFHTTPWFTPSRKLNAEDVVFSLKRMIGKESDLPEVKSEPESVLHHQRQSYIYQKT
                     AGQIYFPYFESVDLANKIASIHSPSNDIVKIELVRPDSALLAHLASQYAVILSKEYAL
                     QLNADDNLVQLDLLPVGTGVYQLESYENNDYVRLKPNMNYWGKKAYIQNMVVDFSTEA
                     TGRMAKFLNNECDVVAFPEPSQLSVLNNRQLISSKGANLVYLAFNMQRGIGQDLALRQ
                     RIARGINRKRIAEKLFYGTGEVADNLLPTALWSKKNNGSYPYQPHQNSGEQAVEMHDS
                     IINRSLDSKTETEEVNQKQRLKLWVIDEKRVYNQHPLKMAEMIRADLATQNLEVEIRA
                     VSRAYLVQQLANKSADYDLILGGWLANNLDPNSFLEALLSCKAAETVTNLSNWCNEDF
                     DFWLQTARLSDDPASANLLYEFAQKLLEEQLPILPLMNANRVLVIKDGVKQADISPFG
                     QVKLSELRLGLGHKKGN"
     gene            9190..10155
                     /locus_tag="PXA71_001509"
     CDS             9190..10155
                     /locus_tag="PXA71_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5105615.1"
                     /translation="MLIVFFRKIFLTLITLIFLSLISFNILLRDPLNHLAELGWFEAY
                     CYYVKSLLNGDFGISFSNGEPLTAQILQVFPATITLCLSALIVSLIIGLPLGFFAATQ
                     QKNMVGRLLNTLGSLSLAVPVFWLALVLMYYASLNQWEVSAIGEIHSLYPKQMVTGFL
                     LLDIWLSDVPYKLKMMQSALHHLALPTLVLAVPATLEVMHITQARAGYVMKQNYIKIA
                     KTRGWTPFRVWRTHIICNTLPALLPMIARTFILIFAFGMLIENIFSWGGIGRWLINAL
                     AIQDYNAISAGVVAIGVFVLLVDMVTGFVRVMLDPSDKKDWYGSY"
     gene            10142..11035
                     /locus_tag="PXA71_001510"
     CDS             10142..11035
                     /locus_tag="PXA71_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDL5105616.1"
                     /translation="MAVIKEPEQFRETNAFKAFWFHFRQDKLALGSFYLFLLLLALIF
                     VGSLLAPYNYNEQFVGLELMPPSWDDKGQISHFLGTDDLGRDILSRIMYGFYYTLGSA
                     LMITLLIAIIGGMIGIYAGLKKGRSFWLISHLFDTFLFMPILLIAIIIATLMEASLVN
                     AMLAIFLAMLPHFIHKIYQATEKQLKKEYIITLKLDGASCWYLIREVIIPNLTGVAIK
                     ALSHIFVIAILDISALSFIMLGAKSPTPEWGAMIRESMELIYIAPWTVILPGLAIIFS
                     IFTVTILGTRLSVIFEKYRKE"
     gene            11106..12158
                     /locus_tag="PXA71_001511"
     CDS             11106..12158
                     /locus_tag="PXA71_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5105617.1"
                     /translation="MALLDIRHLSIEIDMPKGRVKMVDNINLTVDEGEICGLVGESGS
                     GKSLIAKVICGMIKDEWIVSADRFRFDDIELLKLSPAERRKLVGDHISMVFQDPLTSL
                     DPSQQIGKQLMQTIQFRGKWWQRFGWKKKKAIELLHRVGIRDHQDIMKSYPSDITEGE
                     AQKVMIAMAVANQPRLLVADEPTNIMESTTQLQVYRLLSSMNQNLGTSILLVSNDMRS
                     IQNWVDSYNVLYCGQTVEIADKESILESSYHPYTRVLLNSSPDFSQPLAFKSSLNTLR
                     GSVPMLQEMPIGCRLGPRCPFAQKKCINKPPLVKVKQHEFACHFPINFREQNLLKNKT
                     ENTPFVVAEIAEKEAF"
     gene            complement(12167..12397)
                     /locus_tag="PXA71_001512"
     CDS             complement(12167..12397)
                     /locus_tag="PXA71_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HDL5105618.1"
                     /translation="MKLTACKLVFLLYLMFNLTACGTVLSLVEQDYRVYAGVIKDFQV
                     MQEGGIFAVLAVIDLPLSFVLDTLMLPVTLSQ"
     gene            12527..13609
                     /gene="leuB"
                     /locus_tag="PXA71_001513"
     CDS             12527..13609
                     /gene="leuB"
                     /locus_tag="PXA71_001513"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDL5105619.1"
                     /translation="MQTYNIAVLAGDGIGPEVMAEAIKVLEATQQKFGFKLNFNQYNI
                     GGAAIDAQGKALPENTLKGCEEADAILFGSVGGPKWTHLLPDEQPERGSLLPLRKHFS
                     LFCNLRPAALYQGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKGRDGEGAQTRA
                     FDTEVYYKYEIERITRVAFESAMKRKKHVTSVDKANVLQSSILWRETVTEVAKEFPEV
                     TLEHMYIDNATMQLIKAPESFDILLCSNIFGDIISDEAAMITGSMGMLPSASLNEQGF
                     GLYEPAGGSAPDIAGKNIANPIAQILSAAMMLRYSFNLGDAADAIETAIQKALADGYR
                     TADLADDSKPLSTSEMGDIIAKNILA"
     gene            complement(13696..14091)
                     /gene="msrB"
                     /locus_tag="PXA71_001514"
     CDS             complement(13696..14091)
                     /gene="msrB"
                     /locus_tag="PXA71_001514"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDL5105620.1"
                     /translation="MIKPIHALTEQQVDILINHGTERPFTGKFLNEHRVGIYRCARCH
                     NDLFHSDTKFDAGCGWPSFYQTISESSLRYLDDYSLGRHRIEIRCGNCDSHMGHVFPD
                     GPPPTGLRFCLNSAALNFKWEETGEEIDG"
     gene            14316..15320
                     /gene="gap"
                     /locus_tag="PXA71_001515"
     CDS             14316..15320
                     /gene="gap"
                     /locus_tag="PXA71_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010129843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDL5105621.1"
                     /translation="MAIKIGINGFGRIGRIVFRAAQHRDDIEVVGINDLIDVDYMAYM
                     LKYDSTHGRFDGTVEVKDGQLVVNGKAIRVTAERDPANLKWNEIGVDIAVEATGLFLD
                     DETARKHITAGAKKVVLTGPSKDATPMFVNGVNFDTYAGQDIVSNASCTTNCLAPLAK
                     VIHEKFGIKEGLMTTVHATTATQKTVDGPSAKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPALNGKLTGMAFRVPTTNVSVVDLTVNLEKPATYAEICAEIKRASENEMKGVLGYTE
                     DAVVSTDFNGATETSVFDAAAGIALTDTFVKLVSWYDNEVGYSNKVLDLVAHVYNYKG
                     "
BASE COUNT         4820 a         2617 c         3269 g         4614 t
ORIGIN      
        1 ttttatgtaa atttaataga attaattata tttgtattgt agaatccgtc cgaatgcaac
       61 tttaataggt tgtgaagcta tttttttata cagattacta taaggaaact taatatgaaa
      121 atggaaaaaa aagccctttt ccgtggattt ttattatcga cagtggcatt agcagtggct
      181 gcttgtggta acttaagtaa agtgagtgat gaaggaacaa ctgaaaaccc ggtattcccg
      241 aaaatctcag aatctgaatt taaccacgat ggttcacaat ttggttcatg gccaaactgg
      301 gaaaacgttc gtcaaattga aaaagggatg aacaaagatc aattatataa tctaattggt
      361 cgtcctcatt ttgaagaagg cttatatggt gttcgtgaat gggactatgc attcaattac
      421 cgtgaaaatg gcgtacataa aatttgccaa tttaaaattt tattcgataa aaatatgaat
      481 gcacaaagtt tcttctggta tccaaatgga tgtaatggaa actcatcatt tgctttaact
      541 ggcgatttct tattcgattt cgataaagcg actttaacta caaaaggtaa agaagttgtt
      601 gataatgttg ctcaacaatt aaaagcatct aaagcacaac aagttaaagt agcaggctat
      661 acagaccgtt taggctctgc tgcttataac ttagacttat cacagcgtcg ttctaataca
      721 gttaaagctc gtttagtaca acaaggcgtt acagcacaaa ttgaagcggt aggttatggt
      781 aaagcgaatc aagtaaaagc ttgtgatggt gaaactggtc aagcattaaa agattgttta
      841 cgccctaacc gtcgtgttga aatttctgca aattgtggtg taatgaaaca aaatgaaggt
      901 ggcaatgttg caggtcctaa tggtccggct ccactttatc aaaccccagc atatgatggc
      961 agtaaataat ttctagtttt gactaactta gagtagaata ttaaggcaac caaatggttg
     1021 ccttttcttt tatctattta tttatagggg aatactatga actaccaagc tattgcattt
     1081 gatttagacg gaacactact ttcatcgaac gcaacaattt tagaatccag taaagaggct
     1141 attaaaaagg taagagaaaa gggaattaaa gtctactttg ttaccggtag gcaccatact
     1201 gcggttcgcc cttattatgt agaactaggg ctggatacgc cagttgtgtg ttgcaatggc
     1261 acttatgtgt atgattttaa aaatgaaaaa gtattaagcg gtaatccgtt atcagcagaa
     1321 attgcttcaa aattagttaa tgatgcacaa gctcaaggga ttcatactgc ggtttatttt
     1381 gaagatgcaa tgacttatga gtctttgaat attcacttca ctaaattcca aaaatgggtt
     1441 gagtcttgcg caccagaagt tcgtccgaat gtttatcagg tagaaaattt ccaacaagaa
     1501 attgataaag gtgtaaccgt atggaaagtg cttattagcg atccagatct tgccaaaatg
     1561 caaaaatttg ttgaaaaatt accgcctgat caagtaagcc cggaatggtc ttgggttgat
     1621 agggttgata ttaccagtgt tggtaacagc aaaggggcaa gattagcgga agtattaaaa
     1681 acagaaggta ttgatttaca aaaggtgatt gcctttggcg ataatttcaa tgatgtttct
     1741 atgctagaaa ccgttggatt aggcattgca atgggaaatt cagaaccaga tattcagcaa
     1801 aaagcgaaga aaactatagg ttcaaataat gaagatagta ttgctaatga attgaaagct
     1861 caatttaatc tttaattatg ataaaagcaa aatactctat tgctaggcgg ataggactct
     1921 attttttaat tatgatcgga tttgcttcga ttatcagtgg aatctcactt ggtattatgt
     1981 ggagcaataa atctgatgcg agcctgatta atgtttcagg ctcacttcgt atgcaaagtt
     2041 atcgattgtt atcagaaatg gattcaaaaa aagcgctgct acctgagcga ttgttggaat
     2101 atcatcgaac gctacatgct acagagctta gttcattaaa gcaaagtgtt ttattgccag
     2161 atagcgtgat agaaagctat caacaattac ttaaagattg gtatgaaatg caatcttatg
     2221 tcgctcaggg agataaagtt aattatgctt cgcacattga agattatgtg cagagagttg
     2281 atgattttgt tttccgctta caagagttcg ctgagttaaa attaaagatt gcaacaggcg
     2341 tgattgcgat tgcaatgtta ctgattattg cccttgctta tattggcgtt tggtatactc
     2401 gaaaaaagat tattggacct ttaaggcaat tggtaaaagc gagttggcaa attcaaaata
     2461 aagattttga ccacgtaaaa ttagcggtta atgaacccaa tgaattaggg ctactttcct
     2521 ctacttttac tgagatgtct aatgaattat taaaattata tacttcatta gaagataaag
     2581 ttcaggataa aacacgtcgt ttattggcgg taaatcgttc tttactggta ttatatcaat
     2641 gctctcaatt attaactgct aagccgatta ataaagaagt gttaaatcaa gtacttaaaa
     2701 cggtatttga taatgaacat ttgctaggga ttgatttaca agtatatggg gctgaatatt
     2761 ggaatgtatc aatagacaat aaaccaagtt tagattgggt ttctgctgaa attgcaatag
     2821 aaaatgaaaa attgggtatc ttaagctgga aaccctcact ggtttgtcct ggtgaacgat
     2881 tgatccaaaa tgtgtcggaa atgattggtc gtagccttta tgtagtgcag atgcaaaagc
     2941 aacagcaaca attggtactc atggaggagc gtgcaattat tgctcgtgag ttacacgatt
     3001 ccttagccca atctcttacg tttttcaaaa ttcaggttag cctgcttaag cttgctaaaa
     3061 cagatgaaaa gcgtaatgaa attttaactg tatttgaaaa agcgttaaat gatgcttaca
     3121 gccaattaag ggagctgttg acgacgttta ggctaacgat tcaagaagcg aatttacaac
     3181 aagcgttaga aaaaatttta gaaagcttaa gaccgaaaac ctcagcacag attcgcttaa
     3241 gttgcaaatt accttcgcat atgtttaatg ctcagcagca agttcacgta ttgcaaattg
     3301 tacgagaagc tgtgattaat gctattaagc attcgcaagc cactgaaatt aatgtgattg
     3361 ctgaaacaaa tgatgatggt gaacattgtt tgactattca agataatggc gtagggcttg
     3421 ctgcccatac gcaaccagaa gggcattatg gactgacgat tatgcaagaa cgggcggctg
     3481 aactcaaagc cgaattttcg attgaaaatg tggaaagtgg cggagtaaaa gtacaggttt
     3541 tattgccgag tatgattagc aagcggtaat aaaatattaa ttttttgcgt attattggca
     3601 acgaataaaa ggataacaaa tgcaattccg aaaagcagta gaagcggatt ttgagacaat
     3661 attggcaatt tataatcaag caattcccac tcaccaaatt accgccgatt tagaactggc
     3721 aactacgcaa aatcggcgga agtggttcga ttttcacctt gaaacagccc aatatcctat
     3781 ttgggtggtc gaagatgaaa aaggcattgc tggctggttt agtttttcac cattttatga
     3841 aagaccggca tttttacata cttcggaaat cagtatctat ttagaccgct attccaaagg
     3901 aaaaggctat ggctcaaaaa ttattgagtt tatgcaagct gaaatgctta atcacaatat
     3961 tcatacgttg atggcgtatg tgtttgaatt aaatacagtg agccaaaatc taatgagaaa
     4021 acacggcttt gaacaatggg gaagatttcc gaatattgct aatatgggaa aagatgagaa
     4081 aggtgaggat aaatggcgaa cgttgctgat gatgtcttac caaaaaggta tcgaataaca
     4141 agcggtgatt ttttagaata tttttgcaaa taaggacaat atggaaaaga caaaaattgt
     4201 acttgcaaca agtaatgcag ataaagttaa agaaatggca gatgtactct cacaatttgg
     4261 ttttgaggtg gtggctcaaa gtgaatttgg gattgaatca ccggaagaaa ccggtttgac
     4321 ttttgttgaa aatgcgctga ttaaagcacg atttgctgct aaaatgacag gtttaccggc
     4381 gattgccgat gattcaggtt tatcggttat ggcacttggt ggtgaaccgg ggctatattc
     4441 tgcacgttat gccggagagc aggcaaccga tgccgataat cgccaaaaat tactagccaa
     4501 aatgcaaggg caagagaatc gtctggcgaa atttgtcagt tgtatcgtgt ttttaaaaca
     4561 cgaaactgac ccaacacctt atattgcgtc gggtgaatgt ttcggtgaaa ttttgacgga
     4621 agaaagaggt gaaaatggtt tcggctacga ttccctgttt ttctacccac cgaaagcttg
     4681 cacttttgcc gaattagaaa ccaaagagaa aaaagcgatt tcacaccgtg caatcgcact
     4741 agagcaatta aaacagcaat tagcaggaga gaataaatga ttattacaac tacacctacg
     4801 atagagggta aacaaattgt agaatacaaa gggttagtat ttggcgaagt agtttctggg
     4861 gctaatttta tccgtgattt cttagccggt atcaccgata ttattggcgg acgttcaggt
     4921 gcttatgaaa gcaaattaaa cggtgcaaga aaagaggcat tagctgaatt agctaaggag
     4981 gcacaaaaag tgggggcaaa tgcggtggtt ggcgtttcta tggagtatca atcaatgggc
     5041 ggcgataaag gaatgttcat cgtggtagcg actggtactg cggttgtaat acgttaattt
     5101 atgcagtttg aacaacactt tgaagcaaat ttctggcaga acaaatcgct acttgaaatg
     5161 aatgatgctg aatgggaagc attatgtgac ggttgtggta agtgctgcta ccggaaatat
     5221 attcagggaa gagggcggcg tgaacggctt tactatacct cggttgcctg taatttatta
     5281 gatgtgaata caggccgttg tatgaattac tcgaaccgtt ttaaaattga gtcggattgt
     5341 acaaaattaa ctaaaaagaa cttacctgat tttggctggt tgccaaaaac ctgtgcttat
     5401 cgtttacttt atgaaggaaa gcctcttttt gattggcacc ctttaatctc taaagatcct
     5461 gattctgtaa aaaatgccgg aatgctgatt gctaacggta ttcacgaaaa agatgtgatt
     5521 gattggtttg agtttgttat tgatgaagta tgagaaaaag gcgtttggtg caaacgcctt
     5581 tttgttatag agattaggct ttttccatct caaattcaat taacatcatc aaaatatgaa
     5641 tcactttaat gtgaatttct tggatgcggt ctgcgtaacg gaaatgaggt actcggattt
     5701 ccacatcggc taatcctgcc atttgcccgc catctttgcc ggtcattgca atcactttca
     5761 tgcctttttc tttggcaact ttgatcgcat ttaacacatt tttagagtta ccagaggttg
     5821 atagaccaaa gagtacatcg cctttttgcc caacggcctc tagataacga gagaagacat
     5881 attcataacc gaagtcatta cttacacagc ttaaatggct gacatcggaa atagcgattg
     5941 ccgggtatcc gggacggttt tcacggtaac gacctgttaa ttcttcggca aagtgcatcg
     6001 catcacagtg cgaaccgcca ttaccgcaag aaatcacctt accaccttgc ttgaaactat
     6061 ttgcaatcag catggcggca tcttgaatta atttaatatt tttttcatca gacataaatt
     6121 tgtctaatac atctgcagct tcttgaagct cagctttaat ttgttctaaa tacatcattt
     6181 gctcctttgt ttgcaaaacg cttaccttta aacatcggct ttaccaatgg gggtagcgag
     6241 taaaaaattc gttttttatg accgcttgag gcataaaaag tgcaataagt ttagaagatc
     6301 tatgctgtat tgtaaaccta ataacttaaa taatctgaat agggttgtaa acaaaagttt
     6361 ccaaaagaga aaaatagcgg tatgatcgcc tcacaatccc tctcgcattg ttaactctag
     6421 tagctaatat caggctttaa gcgtattaaa caatgcacaa atttgctatt tataggagac
     6481 tatatggtcg taaatccaga atcttttgaa cagataattg gacaatctgt aaagataaaa
     6541 gaggttgttg aacaagcaaa aaaatttgcc aaccttgatg caccattatt gattcaaggt
     6601 gagacgggaa caggaaaaga tttatttgcc aaatcttgtc accattttgg atctcgtcga
     6661 atgcaaaaat ttattgccgt gaactgtgcc ggtttaccgg ctgaagaagc agaatcggaa
     6721 atgttcggac atcgtggcaa tggcgttgag tccgtcggtt tctttgaata tgctcacggt
     6781 ggtacagtat tattagactc tatttctgag ttatcgctgg aaatgcaagc caaattattg
     6841 cgctttttaa atgatggctc ttttcgtcga gtgggcgaag atcaagagat tcaagtcaat
     6901 gttagggtga tctgtacttc attacagcct ttgtcattat tagttgaaaa aggcaaagta
     6961 agagaagatc tgtttcatcg tttaaatgtt ctcactttaa atttaccacc tttgcgagat
     7021 cgaaaagagg atattccatt attagctgat tactttatcg cccaaattag caatcagttg
     7081 ggggtgagca aattagagta tgataatgtt tttttgcaag cattgcagaa ttatcactgg
     7141 cgaggcaact taagagagct ttataacgca ctttatcgag cttgtacact ttcgcatagc
     7201 taccgtttag cggtaaaaga tcttcattta cccagagata tggaggcgat gattgaagta
     7261 cgtgaggagg cgacacttga ggaaatgatg agccagtatg aagcccaatt attgcaccaa
     7321 ttttatgcag aatatccgag tacccgaaaa ttagcacaac ggctcggact ttcacatact
     7381 gcggtggcaa acaaattgcg tcaatatggg ttaacaaaaa atggaaacag taaagatgaa
     7441 taaactagcg gtcatttttt cagtatgttt tgcaaattta gggctaaatt cgaccgctta
     7501 cgcagcgcca agtattcctc aagagctact tgaaaatagc cttgtgtatt gcactacttc
     7561 atcgggattc tcttttaacc cacaaaaatc cgatgtgagt tcgaatatga atgtggtaac
     7621 agagcagatc tacgataaat tagttgagtt taatccgaaa aaaaatcgac tagagcctgc
     7681 tttagctgaa agttattcaa tcagcgacga tggtttagtg attacattac gtttaagaaa
     7741 aaatgtcgct tttcatacaa ctccatggtt tactccgagt cgtaaattaa acgcagaaga
     7801 tgtggtgttt tcgctaaaac gaatgattgg taaagaaagt gatttacctg aagtgaaaag
     7861 tgagcctgaa agtgtattac accaccagcg acaaagctat atttaccaaa aaacagcggg
     7921 gcagatttat tttccttatt ttgaaagtgt tgatttagcg aataaaattg ccagcattca
     7981 ttctccgtca aatgacattg taaaaattga attagtccgt cctgattcag cattgttggc
     8041 gcatttagcc agccaatatg cagttattct gtctaaagaa tatgctttac agctcaatgc
     8101 agatgataac ttagttcaac tggatttatt accggtagga acaggcgtat atcaacttga
     8161 aagttatgaa aataatgatt atgtgcgttt aaaaccaaat atgaattact ggggcaaaaa
     8221 agcatatatt caaaatatgg tcgtagattt ttccacagaa gcgaccggca ggatggcaaa
     8281 atttttaaat aatgaatgtg atgtggttgc ttttccggaa cctagccaat tatcagtgtt
     8341 aaataatcgg cagcttatta gtagtaaagg tgctaatttg gtttatttag cattcaatat
     8401 gcaacggggt attgggcagg atttggcatt acgccaacgt attgcacgcg gcataaatcg
     8461 caaacgtatt gcagagaaat tattttatgg tacaggtgaa gtagcggata acctattacc
     8521 aacagctttg tggtcgaaaa aaaataatgg aagctaccct tatcaaccac accaaaattc
     8581 aggtgagcaa gcggttgaaa tgcatgacag tattataaat cggtctttag atagcaaaac
     8641 agagaccgaa gaagtaaacc aaaaacagcg cttaaaactg tgggtaattg atgaaaaacg
     8701 agtttataat caacacccat taaaaatggc agaaatgata cgtgctgatt tagctacgca
     8761 aaatttagag gtcgaaattc gcgcagtaag tcgagcttat ttggtgcaac agcttgctaa
     8821 taaaagtgcg gattatgatt tgattttagg tggttggtta gcaaataatc ttgatcctaa
     8881 cagttttttg gaggccttac tcagttgtaa agctgcggaa acggtgacta atttatcaaa
     8941 ttggtgcaat gaagattttg atttttggtt acaaacagcc cgtctaagtg atgatccggc
     9001 atcagctaat ttattgtatg aatttgcaca aaaattatta gaagagcaat tgcctattct
     9061 ccctttaatg aatgctaatc gtgtattagt cataaaagat ggagtgaaac aggcagatat
     9121 ttcccctttc ggccaggtaa aattatcaga gttacgtttg ggcttggggc ataaaaaagg
     9181 aaactaatta tgctgattgt cttttttcga aaaatttttc taaccttgat tacgttgatt
     9241 tttttgtcac ttatcagttt taatattctg ttacgagatc cattaaacca cttagccgag
     9301 ttaggctggt ttgaggctta ttgttattat gtaaaatctc tgctaaatgg tgattttggt
     9361 attagtttca gtaatggaga accgctcaca gcgcaaattt tacaggtgtt cccggctaca
     9421 attacgcttt gtttatcggc tctcattgtt tctttaatta ttggtttgcc tcttggtttt
     9481 tttgcggcta ctcagcaaaa aaatatggtt gggcgattat taaatacact aggttcattg
     9541 agtttagccg tgccggtatt ttggctggca ttagtgctaa tgtattacgc ttctctcaat
     9601 cagtgggaag tgtcagcaat tggagaaatc cattcgcttt atccgaaaca gatggtaacc
     9661 ggctttttgc tattagatat ttggttatct gatgtacctt ataaattaaa aatgatgcag
     9721 agtgctttac atcacttagc tttgccgaca ttagtcttgg ctgtgccagc tacattagaa
     9781 gttatgcata ttactcaagc tagagcaggt tatgtaatga aacaaaatta cattaaaata
     9841 gcgaaaacgc gtggctggac accgtttaga gtttggagaa cgcatattat ttgtaatact
     9901 ttacctgcat tattacctat gattgcccgt acctttattt taatttttgc cttcggtatg
     9961 ttaattgaga acatatttag ctggggagga attggacgtt ggctgataaa tgcccttgct
    10021 attcaagact ataatgcgat ttcagcggga gtagttgcaa tcggggtgtt tgtgttatta
    10081 gtagatatgg ttacaggctt tgtgcgggtg atgttagacc catcagataa aaaggattgg
    10141 tatggcagtt attaaagaac ccgagcaatt tagagaaacc aacgcattta aggcattttg
    10201 gtttcatttc cgacaagata aacttgcact tggcagtttt tatctttttt tgctattact
    10261 ggctctcatt tttgttggta gtttgcttgc tccttacaat tataatgaac aatttgttgg
    10321 tttagaatta atgcctccct cttgggacga caaaggtcaa atcagccatt ttttaggcac
    10381 tgacgattta ggacgggata ttttaagccg tattatgtat ggtttttact acacgcttgg
    10441 ttccgcactg atgattacct tattaattgc gattatcggc ggtatgatcg ggatttatgc
    10501 cgggctgaaa aaaggacgtt cattttggtt gattagccat ttgttcgata cctttttatt
    10561 tatgccgatt ttattgattg cgatcatcat tgcaacctta atggaagcga gtttggtcaa
    10621 tgcaatgttg gcgattttct tagcgatgtt gccgcatttt atccataaaa tttatcaagc
    10681 aaccgaaaaa caactcaaaa aagagtacat cattacctta aagctagacg gtgcaagctg
    10741 ctggtattta attcgagaag tgattattcc taatcttacc ggcgtggcaa ttaaagcact
    10801 ttcacatatt tttgtgatcg ccatattaga tattagtgcg ttaagtttta ttatgctggg
    10861 ggctaaaagc ccgacccctg aatggggagc gatgattcgt gaatccatgg aactgattta
    10921 tatagctcct tggacggtga tattacctgg cttagcaatt atttttagta tttttaccgt
    10981 tacaatactt ggtacacgct taagcgtgat ttttgaaaaa taccgtaaag aatagtattt
    11041 aaataggata ctgacacata acaagcggtc atttttaagt aaaattttac agattaagga
    11101 atagtatggc attacttgat attcgccatt taagtattga aattgatatg ccaaaaggca
    11161 gagtaaaaat ggtggataac atcaacctga ctgttgatga gggcgaaatt tgtggcttgg
    11221 tgggagaatc tggttcggga aaaagcctca tagccaaagt gatttgcggt atgattaaag
    11281 atgaatggat tgtgagtgca gatcgctttc gctttgacga tattgaatta ctgaaacttt
    11341 cgccagcgga acgccgaaaa ttggtaggcg atcatatttc aatggtattc caagatccgc
    11401 ttactagcct tgacccaagc cagcaaattg gtaaacaact gatgcaaacc attcaattta
    11461 gagggaagtg gtggcaacga tttgggtgga aaaagaaaaa agcaatcgag ctactacacc
    11521 gtgttggtat tcgtgatcat caagatatta tgaaaagtta cccaagcgat attaccgaag
    11581 gcgaagctca gaaagtgatg attgcaatgg cggtggcaaa tcagccccga ttattggtgg
    11641 cagatgagcc gactaatatt atggaatcaa ccacgcagtt gcaggtttat cgcttgcttt
    11701 ccagtatgaa tcagaatttg ggaacctcaa tcttgctggt gagtaatgac atgcgtagca
    11761 ttcaaaattg ggttgattct tacaatgtgc tttattgtgg acaaaccgtt gaaattgcgg
    11821 ataaagagag cattcttgaa tcgtcttacc acccctatac tcgagtgtta ctcaatagtt
    11881 cgccggactt ttctcagcct ttagccttta aaagtagctt aaatacgcta cgaggctcag
    11941 tcccgatgtt acaagaaatg ccgattggtt gtcgtttagg ccctcgttgc ccttttgcac
    12001 aaaaaaaatg tatcaacaaa ccgccattag tgaaagtaaa acagcacgag tttgcctgcc
    12061 attttccgat taactttaga gaacaaaatt tgcttaaaaa taaaacggaa aatacgccgt
    12121 ttgtggtggc tgaaatagcg gaaaaagagg cgttttaatg tggttattat tggctaagtg
    12181 taacgggtaa cattaaagta tctaatacga aactcaaggg taaatcgatc accgcaagca
    12241 ccgcgaatat accgccttct tgcattactt ggaaatcttt tattacgccg gcataaacac
    12301 ggtaatcctg ttcaaccaag cttagtactg tgccacaagc ggtgaggtta aacatcaaat
    12361 agagtagaaa aacgagttta caagcggtca atttcatcaa aaaatctcca aatacgcttt
    12421 tattttacgc tatttttatc gggttggcgt aaaattcgtt ttaaaaacag ctattttcag
    12481 gcagaatgta gccgaatcga cattaaatat actaagagga tcttatatgc aaacttacaa
    12541 cattgcagtg cttgccggtg acggcattgg gccggaagtg atggcagaag ctatcaaagt
    12601 gcttgaagcg actcaacaaa aatttggctt taaactaaat tttaatcaat ataacattgg
    12661 tggagcagcg attgatgctc aaggtaaagc gttacccgaa aataccttaa aaggctgtga
    12721 agaggcagat gcgattttgt ttggctcggt aggtggcccg aaatggacgc atttactacc
    12781 tgatgagcaa cctgaacgag gttcgctatt accactgcgt aaacatttct cgctattctg
    12841 taatttacgc cctgctgcat tgtatcaagg gctggaaaaa ttctgcccat tacgtgccga
    12901 tattgctgct aaaggttttg atatggtggt ggtgcgtgaa ttaaccggcg ggatttattt
    12961 tggacagccg aaaggccgtg atggtgaagg tgcgcaaacg agagcgtttg acaccgaagt
    13021 atactacaaa tatgaaatcg agcgtattac ccgtgtggcg tttgaatctg caatgaaacg
    13081 taaaaaacac gtaacctctg tggataaagc caatgtgtta caaagctcga ttttatggcg
    13141 tgaaaccgtc acggaagtag ctaaagagtt cccagaagtc acgcttgagc atatgtatat
    13201 tgataatgcg acaatgcagc taatcaaagc acctgaatcg ttcgatattt tattatgctc
    13261 aaacatcttc ggcgatatta tttccgatga ggctgcaatg attacaggtt ctatgggcat
    13321 gttgccttca gccagcctca atgagcaagg tttcggctta tatgaaccgg caggcggttc
    13381 agcaccggat attgccggta aaaatattgc gaatccgatt gcgcaaattt tatcagccgc
    13441 aatgatgttg cgttatagct ttaacttagg tgatgctgct gatgcgattg aaacagcgat
    13501 ccaaaaagcc cttgctgatg gctaccgtac cgctgattta gctgatgaca gcaaaccgct
    13561 ttctacctca gaaatgggcg atattattgc gaaaaatatt ctcgcttaag gctagaagtt
    13621 aaatagcaca agcggtcatt attcgccaaa tttttgcaaa ttttccgcta ataatgaccg
    13681 cttgtttatt actcgttagc cgtcaatctc ttcgcctgtt tcttcccact taaaattcaa
    13741 tgccgcagag ttgaggcaaa aacgcaaccc tgttggtggt gggccgtccg gaaaaacgtg
    13801 tcccatatgc gaatcacaat tcccacaacg aatttcgata cgatgacgtc ctaaactgta
    13861 atcatctaag taacgtagtg acgattctga aatcgtttgg taaaaacttg gccagccaca
    13921 accggcatca aatttagtat ctgagtgaaa taaatcgtta tggcatctgg cacaacgata
    13981 aattcctacc cgatgttcat tcaaaaattt tccggtaaac ggacgttccg taccgtggtt
    14041 gattaaaata tcaacttgtt gttctgtcag ggcgtgaata ggtttaatca tcagcaattc
    14101 tcctaagata gtagcgaagt cattgtagct ttttttgacc tgaaaatcgt tataaatttc
    14161 aaaatttgac atagatcaca aaaaatttat ctgttatatt ggaagggttc ttttggcttg
    14221 tcaggaaagt gaaaagatgt gctataattc aagcatcttt agtgtagtac ataaagaaca
    14281 aattttgttt aactttaata taggtagaaa aatctatggc aattaaaatt ggtattaacg
    14341 gctttggccg tatcggtcgt atcgttttcc gtgcagcaca acaccgtgat gacatcgaag
    14401 tggtaggtat caacgactta atcgatgttg attatatggc ttatatgctg aaatatgatt
    14461 caactcacgg tcgttttgac ggtactgttg aagttaaaga cggtcaatta gtagttaacg
    14521 gtaaagcgat ccgcgtaaca gctgagcgtg acccggctaa cttaaaatgg aatgagatcg
    14581 gtgttgatat cgcagttgaa gcaacaggtt tattcttaga tgatgaaact gctcgcaaac
    14641 acatcaccgc aggtgcgaag aaagttgttt taaccggtcc gtctaaagat gcaacaccta
    14701 tgttcgtaaa cggcgtaaac tttgatactt acgcaggtca agacatcgtg tctaacgctt
    14761 cttgtacaac taactgttta gcaccattag cgaaagttat tcacgaaaaa ttcggtatca
    14821 aagaaggttt aatgacaact gttcacgcaa ctactgcaac gcaaaaaaca gtagatggtc
    14881 catcagcgaa agactggcgt ggtggtcgtg gcgcgtcaca aaacatcatt ccttcatcaa
    14941 caggtgcagc gaaagcagta ggtaaggtat tacctgcatt aaacggtaaa ttaaccggta
    15001 tggctttccg tgttccaacc actaacgttt ctgttgttga tttaactgta aacttagaaa
    15061 aaccagcaac ttatgcagaa atctgtgctg aaatcaaacg tgcttcagaa aacgaaatga
    15121 aaggcgtatt aggctacaca gaagatgcag ttgtttcaac agacttcaat ggtgcaactg
    15181 aaacttcagt atttgatgca gcagcaggta tcgcattaac tgatactttc gttaaattag
    15241 tatcttggta cgataacgaa gttggctact caaacaaagt attagactta gttgctcacg
    15301 tatataacta caaaggttaa
//
LOCUS       DANLRW010000059        15316 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.059, whole genome shotgun sequence.
ACCESSION   DANLRW010000059 DANLRW010000000
VERSION     DANLRW010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15316
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.059"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..1218)
                     /locus_tag="PXA71_001516"
     CDS             complement(<1..1218)
                     /locus_tag="PXA71_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
                     /protein_id="HDL5105622.1"
                     /translation="MKETLLVIADDLTGANDTAVMFAESGFDTVLKTKVSALAQIHPD
                     KAQVISVSTDSRAIGEKAKELTQIAISNAIQNSIGQIYLKIDSTMRGSVKYQIEGAIK
                     AWAGLYPDVKAIICPAYPEMGRTIEAGHLYVNGVPVNETASGKDPICPVHSSSMQKLL
                     PDAQVIPCDTVDNLQASIENSEYKQIVIDAKTHEDLSMIAQVINHIGNKIIPVGSAGL
                     AQKLKNIQNQQQPERNLKLGRALIVVTSIHETSQLQVDEYISTLGGKSIVFNPSPSQL
                     INYSQSEHSLKLQLNALIRFSRDHVIIRANPAKVVNAKSANITETSKEISQHLADLSK
                     FCLDNEKFDSLILFGGDGAAALLDQMNVTEMNVQYAVVPGVPLCSIEKGNYSGITVMT
                     KSGGFGNNTLLSNI"
     gene            complement(1215..2213)
                     /locus_tag="PXA71_001517"
     CDS             complement(1215..2213)
                     /locus_tag="PXA71_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate permease"
                     /protein_id="HDL5105623.1"
                     /translation="MSTQTSKSIVPIYDGMNKIPGGAMVIPLILGSIIGTFFPEFLNL
                     GSFTTALFKSSAGPLIALLIFATGMQITVRSSGPVLAHTGVVLLFKTIIPALLVVILG
                     LWVGNDGVMGVSLLAMLTVVANSNGGIWLAFTGKYGDYRDKGAYVASAVNDGPFFVLL
                     FLGVSGLADIPLSLMLAAVIPLIIGMVIGNLDPKWTELMKPTGAIVIPFFAFALGTGI
                     NLQSIITGGATGIILGIVASLFTGFLVFIGYKTILRRGNQSGIGFAAGTTAGNAIITP
                     EIVAQADPTLAPFVQTATAQIAAAVLVSAILAPLFAAWVLKRQGGLEQDTIKGENL"
     gene            complement(2224..3225)
                     /gene="pdxA"
                     /locus_tag="PXA71_001518"
     CDS             complement(2224..3225)
                     /gene="pdxA"
                     /locus_tag="PXA71_001518"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HDL5105624.1"
                     /translation="MKPILGITMGDAAGIGPEVIIKALANQRIYELAHPVVIGDRKII
                     QRALPIVHSELKLRILNNLDNFVAEYGVIDILDLNNLPEDLPFAQVDPRAGKAAYEYI
                     EEAVNLAMGGKIHAIVTAPLNKEALHAGGKPFPGHTEILATLSNTKDYSMMLTSEKLN
                     VIHVTTHVQLRKACDLITKERVATVIDLAEENARILGFKEPRIAVAGLNPHSGENGMF
                     GDEDQKEIVPAIQEAQAKGFNVTGPVPPDTLFHRAANLNEFDIVVVMYHDQGHIPIKL
                     LGFDTGVNVTVGLPFIRTSVDHGTAFPIAGKGTADSRSMTEALYLGAKMANIKYATH"
     gene            3659..5023
                     /locus_tag="PXA71_001519"
     CDS             3659..5023
                     /locus_tag="PXA71_001519"
                     /EC_number="2.6.1.76"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005820549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminobutyrate--2-oxoglutarate transaminase"
                     /protein_id="HDL5105625.1"
                     /translation="MTIKTPIQAVLASNQYFLDRQDAMESNVRSYPRKLPFAYQKAQG
                     VWVTDVEGNEYLDFLAGAGTLALGHNHPKLIQAVKDVLDSGLPLHSLDITTPLKDAFT
                     EELLSFFPKDKYILQFTGPSGADANEAAIKLAKTYTGRGNVIAFSGGFHGMTHGALSL
                     TGNLSAKNAVQGLMPGVQFMPYPHEYRCPFGIGGEAGAKAVEHYFENFIEDVESGVVK
                     PAAVILEAIQGEGGVVPAPISFLQKVREVTQKHGILMIVDEVQAGFCRSGKMFAFEHA
                     GIEPDIVVMSKAIGGSLPLAVLAIKKEFDAWQPAGHTGTFRGNQLAMATGYVSLKIMR
                     EENLAKNAQERGEYLTNALRELSKELPCIGNVRGKGLMMGIDIVDERQPKDATGAYPR
                     DCDLAVAIQKYCFKNKLLLERGGRGGNVVRVLCAVNITQAECEEFIKRFKQSVAEAVK
                     AVRG"
     gene            5113..6648
                     /gene="ddc"
                     /locus_tag="PXA71_001520"
     CDS             5113..6648
                     /gene="ddc"
                     /locus_tag="PXA71_001520"
                     /EC_number="4.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2,4-diaminobutyrate decarboxylase"
                     /protein_id="HDL5105626.1"
                     /translation="MSNLEKHRQSLFCSDPKSIADYESAMNNAVKAVSDWLKEEKMYT
                     GGSIKELRAKINGFNPTQAGVGVQKSLEHLVEIFLKPSLKVHHPHSLAHLHCPTMVTS
                     QIAEVLINATNQSMDSWDQSPAGSIMEEHLIDWLRQKVGYGKGTSGVFTSGGTQSNLM
                     GVLLARDWAIANHWKKADGSEWSVQADGIPADAMQKVKVVCSENAHFSVQKNMAMMGM
                     GFQSVVTVPSNANAQMDVEALAKTLADLKAEGKIVACIVATAGTTDAGAIDDLKAIRK
                     LADEHQAWVHVDAAWGGALLLSKDFRHFLDGIELTDSITLDFHKHFFQSISCGAFLLK
                     DEANYRFIDYKADYLNSEYDEEHGVPNLVSKSLQTTRRFDALKLWFTVEALGEELYAS
                     MIDHGVYLSKEVEAYINATDGLEMLVPAQFASVLFRVVPQGYPAEFVDTLNQNVADEL
                     FARGEANIGVTKVGEHQSLKMTTLSPIATLENVRALLAQVLAEADRIKDSIVNGTYVP
                     PID"
     gene            6751..7113
                     /locus_tag="PXA71_001521"
     CDS             6751..7113
                     /locus_tag="PXA71_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NirD/YgiW/YdeI family stress tolerance protein"
                     /protein_id="HDL5105627.1"
                     /translation="MKKVLGLTLMAMALSACNSTASNGSSQANTGVAPANVISVKQAL
                     AAADDSYVTVEGTLLNKVGDETYLFKDATGQIRVEIDDEVWAGQHVGSEGNKVRLYGE
                     IDKGFNKTELDVKTLTVL"
     gene            complement(7203..7790)
                     /locus_tag="PXA71_001522"
     CDS             complement(7203..7790)
                     /locus_tag="PXA71_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5105628.1"
                     /translation="MNHLIIYAHPNPSSFNHAILEKTIAASVPNKVVVRDLYQLNFKP
                     ILDWAEFQGTLSKHYEADVAIEHQYWLEADVITLIYPLWWMGFPAILKGYLDRVLSYD
                     FAYRNGEIESIGLLTGKKMQQFVTLGNSNEKYERKGFLAAFEHTLGKGLFEFCGIRDV
                     KMHYFGNIGLKETDYTAILQQITASCSTILKEQAV"
     gene            7966..8514
                     /gene="napF"
                     /locus_tag="PXA71_001523"
     CDS             7966..8514
                     /gene="napF"
                     /locus_tag="PXA71_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HDL5105629.1"
                     /translation="MTDYPNQSLPRRSFLRGQFLDSLKSQKVSQQGYEPIRPPWANLA
                     NFLEKCTACGNCIQACETQIIVKGAAGYPEIDFSRGECTFCEKCVHSCEAEVFRAVSE
                     QPWSHKIEIQAGCLLKLGTECRSCGDSCEMRVIRFRPSLGGIAEMVLNLESCNGCGAC
                     LSVCPTSAIKIQPLQTQANRDE"
     gene            8507..8773
                     /locus_tag="PXA71_001524"
     CDS             8507..8773
                     /locus_tag="PXA71_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HDL5105630.1"
                     /translation="MSEKLSEQENWYVCSLVVQAKPEKLEEVKAEILKIPHTEIHGEK
                     TDEGKLVVTIESNVHLALSDRIDQVRDIKGVIVVSLISNYIDEQ"
     gene            8812..11310
                     /gene="napA"
                     /locus_tag="PXA71_001525"
     CDS             8812..11310
                     /gene="napA"
                     /locus_tag="PXA71_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005566990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase catalytic subunit NapA"
                     /protein_id="HDL5105631.1"
                     /translation="MELNRRDFMKANAAVAAAAAAGIMIPVKNVQADDTGIRWDKAPC
                     RYCGTGCSVLVGTKDGKVVATQGDPDAEVNRGLNCIKGYFLSKMMYGADRMQEPMLRM
                     KDGKFDKNGDFTPVSWDQAFSIMAEKIKTTIKNDGPNAVGMFSSGQTTIFEGYAKVKL
                     WKGGFRSNTIDPNARHCMASAAVAFMRTFGMDEPMGCYNDIEKTDAFVLWGSNMAEMH
                     PILWSRISDRRLSDNKVKVVVMSTYEHRSFELADTPIIFKPHSDLAILNYIANYIIQN
                     DKVNWDFVNKHTKFKRGETNIGYGLRPEHKLQQNTNAKTAGKMYDSDFEEFKKIVAPY
                     TLEEAHRISGVPKDQLETLAKLYADPNQKLVSFWTMGFNQHTRGVWVNHMMYNVHLLT
                     GKIALEGCGPFSLTGQPSACGTAREVGTFIHRLPADMVVTNPKHREIVENSWKLPAGA
                     IPDVPGFHATAQSRALKDGKMKFLWQMCTNNMQGGPNINEEIFPGWRNPETFIVVSDP
                     YPSVSAVAADLILPTCMWVEKEGAYGNAERRTQFWRQQVKGPANARSDTWQLVEFSKY
                     FKVEEVWPEELLAKAPELRGKTLYEILYRNGKVDSYQVPTNIPGYMNDEADHFGYYIQ
                     KGLFEEYAEFGRGHGHDLADFDTYHKVRGLRWPVVKDEKTGEYKETLWRYREGYDPYV
                     KAGEEVAFYGNADKKAVILGVPYEPPAEAPDEEYDLWFCTGRVLEHWHTGTMTRRVPE
                     LHKAFPTNLVWMHPNDAKKRGLRHGDKVKVISRRGEYVSNLDTRGRNKCPEGLIYSTF
                     FDAGQLINKVTLDATDPISFETDFKKCAVKVVKA"
     gene            11399..12304
                     /gene="napG"
                     /locus_tag="PXA71_001526"
     CDS             11399..12304
                     /gene="napG"
                     /locus_tag="PXA71_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HDL5105632.1"
                     /translation="MKMDPNRRQFLKNATRTAAGVCGVGMILGLQQQQSFARQGVALR
                     PPGALPEQDFLSACTRCGQCVQACPYDMLHLASLISPVEAGTPYFIARDKPCEMCLDI
                     PCMNACPTGALSEELKDIDDARMGLAVLLDHETCLNWQGLRCDVCYRVCPLIDKAITL
                     EKVHNDRTSIHAKLIPTVHSDACTGCGKCEQACVLEEAAIKVLPMDLAKGLLGRHYRL
                     GWQEKQNAGKSLIEDVHPEGLRPAYDARMPEGLHEPVYQHMEVKPDVKVATPSRATQN
                     YVPNSTTVEAPEHFPDLDLNLKGVK"
     gene            12304..13182
                     /gene="napH"
                     /locus_tag="PXA71_001527"
     CDS             12304..13182
                     /gene="napH"
                     /locus_tag="PXA71_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HDL5105633.1"
                     /translation="MAANSPKNAGLEARQKLGWWHAYRFLILRRLSQLSIILMFLSGP
                     LWNVWILKGNYSGSLLLDTVPMTDPLMTAEVLATGYRPEWTVLVGALIMVAFYGIVGS
                     KLFCSWVCPMNMVTDTAAWLRRKLGIRQTAKIPRNLRYVILAVILVGSAISGTLLWEW
                     INPVAALGRVFVFGLGATLWLVLVVFLFDLLVAEHGWCGHLCPIGATYALIGAKSLIK
                     VKVVDRNRCDNCMDCYNVCPEPQVLRVPLHGKPEESTVILSKDCITCGRCIDVCAENV
                     FAFGMRFQGSIDVKNI"
     gene            13228..13656
                     /locus_tag="PXA71_001528"
     CDS             13228..13656
                     /locus_tag="PXA71_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HDL5105634.1"
                     /translation="MRKYLAFILAVMSGFAMAEAPKLSGSIDETTESVAPGFHNPQKD
                     VGTIPTTFPFQPPLVPHSIRGLQVSKNVNHCLGCHAIEPSKTTGATRLPPSHFTDRDG
                     KVYENESPRRYFCLQCHVQQTDVNPIIQNKFESVRESQAK"
     gene            13667..14275
                     /locus_tag="PXA71_001529"
     CDS             13667..14275
                     /locus_tag="PXA71_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL5105635.1"
                     /translation="MLRRFCNWLRSPSKMAIGAVILISALGGIFAWSGFNAGLAMTNT
                     EEFCSDCHMNDVVPEYRASAHYSNRSGVKAICSDCHVPHEFFPKWQRKIIAAKEVYAH
                     FTGKVDTKEKFEAHRGEMAEREWARMKANSSQECRNCHNFDDMDFTQQKNIAQQMHAL
                     AQEQGKTCIDCHKGIAHNLPHMEAIQKNFIPDDLLKKAEEKK"
     gene            complement(14337..15179)
                     /gene="cpdA"
                     /locus_tag="PXA71_001530"
     CDS             complement(14337..15179)
                     /gene="cpdA"
                     /locus_tag="PXA71_001530"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HDL5105636.1"
                     /translation="MDAKRMHEYIKLPVTGVIKLLQITDPHLFSNPEETLLNVKTVKS
                     FSAVIEQINKQAKQYFDLVLATGDLIQDNNIAGYHYFAQITNSLNSPIVWLEGNHDVQ
                     PSMSEILAQYKHILPHKQILLGEQWQLLMLNTQVVGMPYGELSYSQLKWLEEKLAQYP
                     QRFTLVALHHNILPTNSAWLDQHSLKNSNELSEIFAKFKNVKAIVHGHIHQQVDDIWH
                     GIPIYATPSTCIQFKPNCDQFTLDLQPQGWREIELHENGTIETVVKRLNSNDFLPNVN
                     AIGY"
BASE COUNT         4554 a         3013 c         3370 g         4379 t
ORIGIN      
        1 tatattgctt aagagtgtgt tgtttccaaa tcctccagat ttagtcatta cagtgatgcc
       61 tgagtagttg cccttttcaa tggagcataa aggaacgccc ggtactaccg catattgtac
      121 attcatctct gttacattca tttgatctaa taatgctgct gcaccatctc caccaaataa
      181 tataaggcta tcaaattttt cattatcaag gcagaattta cttaaatcag ctaaatgttg
      241 agaaatttct ttagaagttt ccgtgatatt ggcagatttt gcatttacaa cttttgcagg
      301 gtttgcccga ataataacat gatctctact aaaacgtatt agagcgttta attgtagttt
      361 cagtgaatgt tctgattgcg agtagttaat caactgtgaa ggcgaaggat taaatacaat
      421 agattttcct cctaaagttg aaatatattc atcaacttgc agttggcttg tttcgtgaat
      481 tgaggttacg acaattaatg ctctacctaa tttaagattt cgctctggtt gttgttgatt
      541 ttggatattt ttcaacttct gtgccaatcc ggctgagcca acaggaataa ttttattacc
      601 tatgtgattt atgacttggg caatcattga gagatcttcg tgcgttttag catcaataac
      661 gatctgttta tattcactat tttcaataga tgcctgcaaa ttatcgaccg tatcacacgg
      721 gattacttga gcatcaggca atagtttttg catagaagat gaatgcacag ggcagatagg
      781 atcttttcct gaagcagttt catttacagg aacaccatta acatataaat gaccagcttc
      841 tatagttctt cccatttctg gatatgcagg acaaataatt gctttaacat cgggatataa
      901 accagcccaa gctttaatag caccttcaat ctgatattta acagagcctc tcattgtgga
      961 atcaatttta aggtaaattt gcccgatact attttgaata gcattgctaa ttgcaatttg
     1021 agtcagctct tttgctttct ctccaattgc tcttgaatct gtagaaacag aaattacttg
     1081 ggctttatca ggatgaattt gggctaatgc cgaaacttta gtttttaaga cagtgtcaaa
     1141 tcctgattca gcaaacataa ccgcggtatc atttgcacca gtaaggtcat cagcaataac
     1201 taagagtgtc tctttcatag attttctcct tttatagtgt cttgttctaa gccaccttga
     1261 cgttttaaaa cccacgctgc aaataatgga gctaagattg ctgaaactaa tacagctgcg
     1321 gcaatctgtg cagtcgcagt ttgaacaaaa ggtgctaatg tagggtctgc ttgagcaaca
     1381 atttcaggtg taataatggc atttccagca gtagttcctg ctgcaaaccc gattcctgat
     1441 tgattaccac gtcttaaaat tgttttgtaa ccgataaata caagaaaacc tgtaaagaga
     1501 gaagctacga tacctaaaat aattcctgtt gctcctccag taataataga ttgcagattg
     1561 attcctgttc ctaatgcaaa agcaaagaaa ggaatgacta ttgcacctgt tggtttcatt
     1621 aactctgtcc atttaggatc taagttacca ataaccatac caataataag aggaataaca
     1681 gctgcaagca ttaatgaaag aggaatatct gctaatcctg atacacctaa aaatagtaaa
     1741 acaaagaaag gtccatcatt aacagccgaa gcgacataag ctcctttatc tctataatca
     1801 ccatatttcc ctgtaaacgc taaccaaata ccaccatttg aatttgcaac aacagttagc
     1861 atagctaata aagaaacgcc cataacacca tcattaccta cccataatcc taaaatcaca
     1921 actaaaagag cgggaataat agttttaaat agtaatacaa caccggtatg ggcaagtaca
     1981 ggtccagaac ttctcacggt aatttgcata cctgtagcga aaattaatag tgcaataagt
     2041 ggtcctgctg atgatttgaa taaagccgtc gtaaatgaac ctaaatttaa aaattcagga
     2101 aagaatgtac caataataga accaagaatt agcggtatta ccattgcacc gccaggaatt
     2161 ttattcatac catcatatat cgggacgatg gatttagatg tttgagtaga catattaatc
     2221 tccttagtgt gtcgcatatt tgatatttgc catttttgca cccaaataga gtgcttcagt
     2281 catactacga ctatctgctg ttcctttgcc tgctattggg aaagcagttc cgtgatcgac
     2341 agatgttcga ataaatggaa gaccgacagt aacgtttaca cctgtatcaa agcctaataa
     2401 tttgataggg atatgccctt gatcgtgata catcacaaca acaatatcga attcatttag
     2461 gttagctgca cggtgaaata aagtatccgg agggacaggc cctgtaacat taaacccttt
     2521 ggcttgagcc tcttgaattg cgggaacaat ttctttttga tcttcatcgc caaacattcc
     2581 attttcacct gaatgaggat ttaaaccagc gactgcaata cgaggttctt taaacccaag
     2641 aatgcgagca ttttcttctg ctaaatcaat aactgtagca actcgttctt tggtaattaa
     2701 atcacaggct ttacgaagtt ggacgtgagt agtaacgtga ataacattga gtttttcact
     2761 ggttagcatc attgagtaat ctttagtatt actgagggtt gcaaggatct ctgtatggcc
     2821 aggaaatggt ttaccacctg cgtgtagggc ttctttattc agtggtgctg taacaatagc
     2881 gtggattttt cctcccattg ctaaattaac tgcctcttca atatattcat aagctgcttt
     2941 tccagcacgc ggatcaactt gagcaaaagg caaatcttca ggcaggttat tcaaatctaa
     3001 aatatcaata acgccatatt cggctacaaa gttatctaga ttattgagaa ttcttaattt
     3061 caattctgaa tgaacaatag gtaaggctcg ttgtataatt tttcgatcac cgatcacaac
     3121 agggtgtgct aactcataaa tccgttgatt agctaatgct ttaataataa cttctggtcc
     3181 gataccggcg gcatctccca tcgtaattcc caatataggt ttcatattta ctccttgatt
     3241 gaaattaatc attttgaacg aagtatagct tatatgaaat cataaaagtg tgataaacat
     3301 cacaaaagtg aactttttta atcttattga tttaatttaa tcaattttaa ggtggtaaat
     3361 tggatagggt atgaaagtga aaggcattta ttgctagata aaagcttccc ttttcaataa
     3421 aaaagagtat catacgctct cttaaacgta accctacatt taagtctgtt tccaacctat
     3481 cccaatttct ttattcctta ggggcatata gggtaaaaac aaaaaagctg aaacgctttt
     3541 tttaataagt agcgagtcaa atgccccatg gcatctattc ttttaggaat agaaagctta
     3601 ggctttccgc aaggcacccg acttattttt ttcacctctt gtagaaggtt tattttcaat
     3661 gacaattaaa actcctattc aagccgttct tgcttcaaac caatattttt tagatcgcca
     3721 agatgcaatg gaatcaaacg tgcgtagcta cccacgtaaa ttaccttttg cttaccaaaa
     3781 agcacaaggc gtttgggtaa ctgatgttga aggcaatgaa tacctcgatt tcctagcagg
     3841 tgcaggaacg cttgcattag gtcataacca ccctaaatta atccaagcag ttaaagatgt
     3901 attagacagt ggtttacctt tacactcgtt agatattacg actccgttaa aagatgcttt
     3961 tacggaagaa ttactctctt tctttccaaa agataaatat atcctccaat ttactggccc
     4021 gtctggtgca gatgctaacg aagcggcaat taaattagcc aaaacctaca ctggtcgtgg
     4081 caacgtaatt gctttctccg gtggtttcca cggaatgacc catggtgcgt tatcgctcac
     4141 cggtaattta agtgcgaaaa atgcagtaca aggcttaatg ccgggcgtac agtttatgcc
     4201 ttatccgcac gaataccgct gtccgtttgg cattggtggc gaagccggtg caaaagcagt
     4261 tgaacattat tttgagaact ttattgaaga tgttgaaagt ggtgtggtaa aaccggcagc
     4321 ggtgatcctt gaagccattc aaggtgaagg cggtgtggtt ccggctccaa tcagcttctt
     4381 acaaaaagtg cgtgaagtca ctcaaaaaca cggcatctta atgattgtgg acgaagttca
     4441 agctggtttc tgccgttcag ggaaaatgtt tgcctttgaa cacgcaggca ttgagccgga
     4501 tatcgtagta atgtcaaaag cgattggtgg tagcttaccg cttgcggtat tagcgatcaa
     4561 aaaagagttt gacgcttggc aaccggcagg tcataccggt acattccgtg gtaaccaatt
     4621 agcaatggca accggctatg tatcgcttaa aattatgcgt gaagagaatt tagcgaaaaa
     4681 cgcacaagag cgtggcgaat acttaactaa cgcattacgt gaattaagca aagaattacc
     4741 ttgtattggc aatgtgcgtg gtaaaggctt aatgatggga attgatattg ttgatgaacg
     4801 tcagccaaaa gatgcaacag gtgcataccc gcgtgattgc gatttagccg ttgcaattca
     4861 aaaatactgc tttaaaaaca aattgttatt agagcgtggc ggacgtggcg gtaatgtggt
     4921 gcgtgttctt tgtgccgtga atattaccca agcagaatgt gaagagttta ttaaacgctt
     4981 taaacaatct gttgctgaag cagtgaaagc ggtgcgtggt taatagttag aatggtagga
     5041 gcgaaacatt tttcgcccta atgtaaaaag gggcgaatat ttattcgccc ctacaccaat
     5101 aggatagaaa taatgtcaaa cctagaaaaa cacagacaat ccctgttttg tagcgatcca
     5161 aaatcgattg cggattatga atcggcaatg aataacgctg tgaaagcggt ttcagactgg
     5221 ctgaaagaag aaaaaatgta caccggtggc tcaattaaag agttgcgtgc caaaatcaac
     5281 ggttttaacc caacccaagc tggtgtgggc gtgcaaaaat cactggagca tttggtggaa
     5341 attttcttaa agccaagcct caaagttcac caccctcatt ctttggccca cttacattgc
     5401 ccgacaatgg taaccagcca aattgcagaa gtgttaatta atgccaccaa ccaatcaatg
     5461 gactcttggg atcaaagccc ggcaggttcg attatggaag agcatttaat tgactggcta
     5521 cgtcaaaaag tcggctatgg caaaggaact tcaggagtct ttacctcagg tggtacgcaa
     5581 tcaaacctga tgggcgtatt attggctcgt gactgggcga tagcgaacca ttggaaaaag
     5641 gcagacggtt cagagtggtc ggtgcaagcc gacggtattc ctgccgatgc aatgcaaaaa
     5701 gtgaaagtgg tttgttccga aaacgctcac ttctcggtgc agaaaaatat ggcaatgatg
     5761 ggaatgggtt tccaatcggt agtgactgta ccgtcaaatg ccaatgcaca aatggacgtt
     5821 gaagctcttg cgaaaacgtt ggcggattta aaagccgaag gcaaaattgt ggcttgtatc
     5881 gtcgcaaccg cagggacgac cgatgccggt gcgattgatg atttaaaagc gatccgtaaa
     5941 ttagccgatg aacatcaggc ttgggttcac gttgatgctg cttggggtgg tgcattatta
     6001 ctgtcgaaag atttccgcca cttcttagac ggcattgaat taaccgattc cattaccctt
     6061 gatttccaca agcatttctt ccaatcaatt tcgtgtgggg cattcttgct aaaagatgaa
     6121 gcgaattacc gctttattga ttacaaggca gactacctga attcagaata tgacgaagaa
     6181 cacggcgtgc cgaatttagt gtcaaaatca ttgcaaacta cccgccgttt tgatgcgtta
     6241 aaattatggt ttaccgttga agccttgggt gaggagctat acgcttcaat gatcgaccac
     6301 ggggtttatc tttctaaaga agtggaagcc tacattaatg ccaccgatgg cttggaaatg
     6361 ttagtgccgg cacaatttgc ctcagtctta ttccgtgtcg taccacaagg ttacccggca
     6421 gaatttgtgg ataccttaaa ccaaaatgtg gcagatgagt tatttgctcg tggcgaagct
     6481 aacattggtg tgaccaaagt cggtgagcat caatcactga aaatgactac tttaagcccg
     6541 attgcaacgc ttgaaaacgt aagagcatta ttagctcagg tgttggcaga agcagatcgg
     6601 attaaagatt cgattgtaaa tggaacttat gttccgccaa ttgattaaac tgcgttaaaa
     6661 ataaaaaggt gttttcgaca tttatttgtg ttttaatgtt tgcattcggt agtctttatc
     6721 gaatgcaaat ttttttaaca aggagttttt atgaaaaaag tcctgggttt aacattgatg
     6781 gcaatggcgt tatcggcgtg taattcaact gcttccaacg gttcttcaca agcaaataca
     6841 ggtgttgcac cggcgaatgt gattagcgtg aaacaggcgt tagcggcagc agatgacagc
     6901 tacgtgacgg tagaaggcac actcttaaac aaagtcggtg acgaaactta cttatttaaa
     6961 gatgcgacag ggcaaatccg tgttgagatt gacgatgaag tatgggcagg tcagcacgtt
     7021 ggtagcgaag gcaataaagt ccgtttatac ggagagattg acaaaggttt caataaaacc
     7081 gagttagatg ttaaaacact cactgttctg tagaagatca aaccttaatt tggttccccg
     7141 ccttgtttgg cggggttttt acgttaatta atcaaaccat ccttttgcaa aaaaacgcaa
     7201 aattataccg cttgttcctt caatattgtg ctacaagatg ctgtgatttg ctgcaaaata
     7261 gcggtgtaat cagtctcttt taaaccaata ttaccgaaat agtgcatttt tacatcacga
     7321 atcccacaga actcaaacag cccttttccc agcgtatgtt caaatgctgc taaaaagcct
     7381 tttcgttcat atttttcatt ggaattaccg agcgttacaa attgttgcat ttttttgccg
     7441 gtcagcaagc cgatactttc aatttccccg ttacgatagg caaaatcata acttaacacc
     7501 ctgtctaaat agccttttaa aattgccgga aagcccatcc accaaagcgg gtaaattaac
     7561 gtaatcacat cagcttcaag ccaatattga tgctcaattg ccacatctgc ttcatagtgt
     7621 ttactgagtg tgccttgaaa ttccgcccag tctaatatcg gcttgaagtt gagttggtag
     7681 agatctcgta caaccacctt atttggaacg gaagctgcta tcgttttttc caaaatcgca
     7741 tggttaaagc tggagggatt cgggtgtgcg taaataatca ggtgattcat agcgttttcc
     7801 tttactgtgt cgaggcagct actagaagat tttagcgaaa ctttctttga tgaaaatcaa
     7861 tattttggcg aatataccgg caaatacccc gtttgaggaa tgaacggttt taagtgaaca
     7921 ttagataatt tagcctatta tagtgatgag taaaaaggtg ttttcttgac tgattatcct
     7981 aatcaatcac ttcctcgccg tagctttttg cgagggcaat ttttagactc gttaaaaagc
     8041 caaaaagtca gtcagcaagg gtatgagccg attcgtccgc cttgggctaa tttagcaaat
     8101 tttttagaaa aatgcaccgc ttgcggtaac tgcattcagg cttgcgaaac ccagattatt
     8161 gtaaaaggtg ctgcgggcta ccctgaaatt gattttagcc gtggtgaatg cactttttgt
     8221 gaaaaatgtg tgcattcttg cgaggcagag gtattccgag cagtttcaga acagccttgg
     8281 agccataaaa ttgagattca agccggctgt ttattaaagc tcggaacgga atgccgaagc
     8341 tgtggcgata gctgtgagat gagagtgatt cgtttccgcc cgagtttagg tggcattgcc
     8401 gaaatggtat taaatttgga aagctgtaat ggctgtgggg cttgtttgag cgtttgtccg
     8461 acaagtgcga taaaaattca gccattacaa acacaggcaa acagagatga gtgaaaaatt
     8521 atccgaacag gaaaactggt atgtgtgcag tctcgtggtg caagcaaaac cggaaaaatt
     8581 ggaagaagta aaagccgaga ttctgaagat tcctcatacc gaaattcacg gtgagaaaac
     8641 agatgaaggc aaattggtcg tgacgattga aagcaatgtg catttagccc tttccgatcg
     8701 aatcgatcaa gtaagagata ttaaaggcgt gattgtggtg tctttaattt ctaattacat
     8761 tgatgaacag tgattaatga ttatttttga agccaaacgt gggacatagt tatggaactc
     8821 aatcgtagag attttatgaa agcgaacgcc gctgtggcag ctgctgcagc cgcaggaatt
     8881 atgattcctg tgaaaaacgt tcaggcagat gacaccggta ttcgttggga taaagcccct
     8941 tgtcgttact gtggtacagg ttgtagcgtg ctagtcggta ctaaagacgg taaagtagtg
     9001 gcaacccaag gtgacccgga tgcagaagta aaccgtggtt taaactgtat taaaggttat
     9061 ttcttatcca aaatgatgta cggtgcagac cgtatgcaag agccaatgtt gcgtatgaaa
     9121 gacggtaagt tcgacaagaa cggcgatttc acgccggttt cttgggatca agcctttagc
     9181 attatggcgg agaagattaa aaccactatt aaaaatgacg gcccgaatgc tgtaggtatg
     9241 ttctcatcag gtcaaacaac catttttgaa ggttatgcga aagtgaaact ttggaaaggt
     9301 ggtttccgtt caaatacgat tgacccgaat gcccgccact gtatggcgtc cgctgcggtt
     9361 gcctttatgc gtacctttgg tatggacgag ccgatgggct gctataacga catcgaaaaa
     9421 accgatgcgt tcgtgctttg gggttcaaat atggcagaaa tgcacccgat tttatggtct
     9481 cgtatttctg atcgccgttt atcagacaat aaagtgaaag tggtggtaat gtccacttac
     9541 gaacaccgtt cgtttgaatt agccgataca ccgattatct tcaaaccaca ctcagattta
     9601 gcaattttaa actacattgc gaactacatt atccaaaacg ataaagtaaa ttgggatttt
     9661 gttaacaaac acaccaaatt taaacggggt gaaaccaata tcggttacgg tttacgtcct
     9721 gaacacaaat tacaacaaaa taccaatgcg aaaactgccg gtaaaatgta tgacagcgat
     9781 tttgaagagt ttaagaaaat cgttgcccct tatacattag aagaagctca ccgtatttca
     9841 ggcgtgccga aagatcagct tgaaacatta gcgaaattat atgcagatcc taaccaaaaa
     9901 ttagtgtcgt tctggacgat gggctttaac caacataccc gtggtgtgtg ggtaaaccat
     9961 atgatgtaca acgtccattt attaaccggt aagatcgcat tagaaggttg tgggccgttc
    10021 tcactcacgg gtcagccgtc cgcttgtggt actgcccgtg aagtgggtac atttattcac
    10081 cgcttaccgg cagatatggt ggtcacaaat ccgaaacacc gtgagattgt agagaattct
    10141 tggaaattac cggctggagc aattcctgat gtaccgggct ttcacgctac agctcaaagc
    10201 cgtgccttaa aagacggcaa aatgaaattc ttatggcaga tgtgtaccaa caatatgcag
    10261 ggcggcccga atatcaatga agagatcttc ccgggctggc gtaatcctga aacctttatt
    10321 gtggtttcag atccgtaccc atctgtttca gcagtggctg ctgacttaat tcttccaacc
    10381 tgtatgtggg tggaaaaaga aggggcttac ggtaacgcag aacgccgtac ccaattctgg
    10441 cgtcagcaag ttaaagggcc ggcaaatgcc cgttcagata cttggcagtt agtagagttc
    10501 tctaaatact tcaaagtaga agaagtatgg ccggaagagt tattagctaa agcaccggaa
    10561 ttgcgtggta aaactctata cgaaatcctt taccgcaacg gcaaagtaga tagctaccaa
    10621 gtgccaacta acattccggg ctatatgaat gacgaagcag atcacttcgg ttactacatt
    10681 caaaaaggct tatttgaaga gtatgcggaa tttggccgtg gtcacggtca cgatttagcc
    10741 gactttgaca cctaccacaa agtacgtggc ttacgttggc cggtggtaaa agacgagaaa
    10801 accggcgaat acaaagaaac tttatggcgt taccgtgaag gctatgaccc atacgttaaa
    10861 gccggtgaag aagtggcatt ctatggcaat gcggacaaaa aagcagtgat tttaggtgtg
    10921 ccatacgaac cacctgcgga agcaccggac gaagaatatg acttatggtt ctgtaccggt
    10981 cgtgtactag aacattggca caccggtacg atgacccgcc gtgtgccgga gttacataaa
    11041 gcattcccaa ccaacttggt ttggatgcac ccgaatgatg cgaaaaaacg aggcttacgt
    11101 cacggtgata aagtgaaagt gatttcacgc cgtggtgaat atgtatcgaa cttagatacc
    11161 cgtggacgta ataaatgtcc ggaaggtttg atttactcga ctttcttcga tgccggtcag
    11221 ttaatcaaca aagtgacact tgatgcgact gatccaattt catttgaaac cgacttcaaa
    11281 aaatgtgcgg ttaaagtggt gaaagcttaa ttgtaggggc aaattatttg cctcagacaa
    11341 gcggtcaaat ttgcaaattt ttttacaaaa acgaccgctt acctaagagg aacccacaat
    11401 gaaaatggat ccaaatcgtc gccagttttt aaaaaatgca acccgtaccg cagccggtgt
    11461 ttgcggtgta ggaatgattt tagggctaca gcaacaacaa agttttgccc gtcaaggggt
    11521 agcactacgc ccaccgggtg cattgccgga gcaagatttc ctgagtgctt gcacccgttg
    11581 cggacaatgt gtgcaggctt gtccttacga tatgttgcat ttggcatcgc ttatttcacc
    11641 agtggaagcc ggcacgccat actttattgc acgggataaa ccttgcgaaa tgtgcttgga
    11701 tattccctgt atgaatgctt gcccaaccgg ggcattaagc gaagagctaa aagacattga
    11761 cgatgcacga atggggcttg cggtgttgct cgaccacgaa acttgtctta actggcaagg
    11821 cttgcgttgt gacgtgtgtt accgtgtttg tccgttaatc gacaaagcga ttactcttga
    11881 gaaagtgcat aacgaccgta cctcgattca cgccaaactg attccgaccg tgcattctga
    11941 tgcttgcacc ggttgcggta aatgtgaaca ggcttgcgta ttggaagagg cagcgatcaa
    12001 agtgttaccg atggatttag ccaaaggctt gctcggtcgt cactatcgtt taggctggca
    12061 agagaaacaa aatgccggta aatcgctgat tgaagatgtt cacccagagg gtttacgccc
    12121 agcttatgat gccagaatgc cggaaggctt acacgagccg gtgtatcagc atatggaagt
    12181 aaaacctgat gtgaaagtgg ctacgccaag tcgggcgaca caaaactatg tgccgaactc
    12241 tacgacggtg gaagctccgg agcatttccc tgatttagac ttgaatctca agggggtgaa
    12301 ataatggcag ccaattctcc aaaaaatgcg ggcttagagg ctcgtcagaa actaggttgg
    12361 tggcacgctt accgcttttt gattttaaga cgcttaagcc aactcagcat tattttgatg
    12421 tttttaagcg gcccactttg gaatgtctgg attttaaaag gaaactacag cggtagctta
    12481 ttactagata ccgtgccgat gacagaccca ttaatgaccg ctgaagtgct ggcaaccggc
    12541 tatcgccctg aatggacggt attggttggg gcgttaatta tggtggcgtt ttacggcatt
    12601 gtcggcagca agctgttttg tagttgggtc tgcccgatga atatggtaac agatactgct
    12661 gcttggttaa gacgcaaact cggtattcgc caaactgcta aaattccacg caatttacgc
    12721 tatgtgattt tggcggtgat tttagtcggt agtgcgattt ccggaacact attgtgggag
    12781 tggatcaacc cggttgcggc tctcggtcgg gtgtttgtat tcggtttagg ggcaacgctt
    12841 tggctggttt tagtggtgtt cttgtttgac ttattggtgg cagaacatgg ctggtgtggt
    12901 catctttgcc cgattggtgc aacgtatgcc ttaattgggg cgaaaagcct gattaaagtc
    12961 aaagtggtag atcgtaaccg ttgcgataat tgtatggatt gttacaacgt ttgtccggaa
    13021 cctcaagtgt tgcgtgtgcc gctacacggt aaaccggagg aaagcacggt tatcttatct
    13081 aaagattgca ttacctgcgg acgttgtatt gacgtttgtg ccgaaaatgt atttgccttc
    13141 ggaatgcgtt ttcaaggcag tattgatgtg aaaaatattt aatttttatc tttttgaaaa
    13201 caagaatttt aatggagtga acctcaaatg agaaaatatc tcgccttcat tttagccgtg
    13261 atgtccggct ttgcaatggc ggaagcccct aagttatccg gatcaattga tgagacaacc
    13321 gaaagtgttg caccgggatt tcataaccca caaaaagatg tgggcacgat tccaaccact
    13381 ttccctttcc aaccaccgct tgttccacat agtattcgtg gcttacaagt gagcaaaaac
    13441 gtaaaccatt gtttaggttg ccacgctatt gaaccatcta aaaccacagg tgcgacccgt
    13501 ttaccgccaa gccattttac cgaccgtgat ggcaaggtgt acgaaaacga atctcctcgt
    13561 cgttatttct gtttgcaatg ccacgtgcaa caaactgatg taaacccgat tattcaaaat
    13621 aaatttgaat ctgtacgtga atctcaagct aaataaggag taagtaatgt tgagaagatt
    13681 ttgtaactgg ttacgtagcc caagcaaaat ggcaattggt gctgtaatcc ttatttctgc
    13741 attaggtggt attttcgctt ggagtggttt taatgcaggg ttagcaatga caaatactga
    13801 agagttttgt tcagattgcc atatgaacga tgttgtgccg gaataccgtg cctctgctca
    13861 ctattcaaac cgcagcggtg tgaaagcgat ttgttcagat tgccacgtac cgcacgaatt
    13921 ctttccaaaa tggcaacgta aaatcatagc cgcaaaagaa gtttatgcac actttaccgg
    13981 taaagtagat accaaagaga aatttgaagc tcatcgtggc gaaatggcag aacgtgaatg
    14041 ggcacgtatg aaagcgaaca gctctcaaga gtgccgtaac tgtcataatt ttgatgatat
    14101 ggacttcact caacaaaaaa acattgcgca gcaaatgcac gcattggcac aagagcaagg
    14161 taaaacctgt attgactgcc acaaagggat tgcacacaat ctcccacata tggaagcgat
    14221 ccagaaaaac tttatccctg atgatttgct gaaaaaagca gaagagaaga aataacttaa
    14281 cgtgtttcaa tagaaaaccc tcaatttcca ttgagggttt ctttttagta gccaagttag
    14341 taaccaatgg cattgacatt tggtaaaaaa tcgttggaat ttaaccgctt gacgaccgtt
    14401 tctatcgtgc cgttttcgtg caattcaatt tcacgccagc cttgtggttg taagtctaag
    14461 gtaaactggt cgcaattcgg cttaaattga atgcaagtag atggggtggc ataaatcgga
    14521 ataccatgcc aaatatcatc aacctgctga tgaatatgac catgcacaat cgcttttaca
    14581 ttcttaaatt ttgcgaaaat ctcggataat tcattgctgt tttttaagct atgctgatcc
    14641 agccacgctg agtttgtcgg caaaatattg tggtgcagag caaccaaggt aaaccgttgc
    14701 ggatattgtg ccaatttttc ttctaaccat ttaagctgtg agtaagagag ttcgccataa
    14761 ggcataccta ccacctgggt atttagcatc agaagctgcc attgctcacc gagtaaaatt
    14821 tgtttatggg gaaggatatg tttatattgc gccaaaattt ctgacatact cggctgaaca
    14881 tcgtgattcc cctctagcca cactatcggc gagtttagcg aattagttat ctgtgcaaaa
    14941 tagtgataac cagcaatatt gttatcttga atcaaatcac ctgtggcaag aactagatca
    15001 aaatattgct tcgcttgttt gtttatttgc tcaataactg ccgaaaaact ttttactgtt
    15061 ttgacattaa gtagagtttc ctccggattg gagaaaaggt gagggtcagt tatttgtaat
    15121 aacttaatta cccctgttac gggtaactta atatattcgt gcattcgttt tgcatccatt
    15181 caaattctag taatttttaa ctggtgagat tctatcagta agctaaaagt aaaaatgtgg
    15241 actatgccgc atttttgaaa aaaagtgaga ttaatcaaaa aaaatttatt attttcgata
    15301 gctaagacaa tggtaa
//
LOCUS       DANLRW010000060        15234 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.060, whole genome shotgun sequence.
ACCESSION   DANLRW010000060 DANLRW010000000
VERSION     DANLRW010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15234
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.060"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            143..490
                     /locus_tag="PXA71_001531"
     CDS             143..490
                     /locus_tag="PXA71_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105637.1"
                     /translation="MFREEAIEYQSKKWKSTAVLFSRVPALVVFSISFFIFTAFILFI
                     VFGNYTRRETVVGELVMQSHPILLSAPKSGYISENYIQPHQQVKKRAIRWLKLRWIEL
                     RIAKILMLILFFR"
     gene            487..1404
                     /locus_tag="PXA71_001532"
     CDS             487..1404
                     /locus_tag="PXA71_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family efflux transporter periplasmic
                     adaptor subunit"
                     /protein_id="HDL5105638.1"
                     /translation="MKSQIQATEQAITALYKNKSETINSLEKQIKNSQKIYQDKQSYL
                     VEIEKSMNDYAELVKRYEKLLKVGHSSHDEVNIQKSRYFQQKSLFNELKQELIQLKST
                     QLSLENEIETRKTEFNNQIIRYEMQKSDLNIRLMEFESVSDIIVNASLDGKIESTSVT
                     VGQIIKENDPLAQILPQNKGNYQLVMWVPNSAISFIKQGDEVNIRYEAFPFEKFGQFK
                     GKITSISTLPASLQELSFYKNLPVNLEQGIPLYKILIELADQNVKYNDTSLYFMSGMK
                     AEATLFLEKRKLYEWIFFPMYQLRKNMEQ"
     gene            1404..2195
                     /locus_tag="PXA71_001533"
     CDS             1404..2195
                     /locus_tag="PXA71_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase C39"
                     /protein_id="HDL5105639.1"
                     /translation="MTGIKQLKFDFRRRIPVILQTETAECGLACLAMMLGYYDKNTNL
                     FELRSQYGTSSRGVTLHTLISIANDCGLITRPLSLELDEVPQLRLPCILHWDFNHFVV
                     LTHASEKQFIIHDPAFGKRKLSRAEFSNHFTGVALEVWSEVKFEKSNNENTISLYETL
                     KHISGIKGALVKIFALSMLIELIALLMPIGTQLVMDHVMQAKDQSLLLIICIGLFLFT
                     LFRTMVSMFRAWVSLKMNYLIDFQWTASFFSHLLKLPLDFFENAK"
     gene            2573..3490
                     /locus_tag="PXA71_001534"
                     /pseudo
     CDS             2573..3490
                     /locus_tag="PXA71_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014167835.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(3492..4160)
                     /locus_tag="PXA71_001535"
     CDS             complement(3492..4160)
                     /locus_tag="PXA71_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDL5105640.1"
                     /translation="MKYLYALIFSLFFSSVYAAERQLQCKVVGISDGDTLTCLVNKTP
                     LKIRLQHIDAPEQAQPYGNKAKQALAQFVFQQNITAIVSGYDRYQRLLATLYLNDKNI
                     NLALVENGMAWAYTTKREYIEAQDQAQQAKIGLWQDKFPINPSQWRKTHTSTLPQAVK
                     KPENIANQPPTIDCQIKLSCNQIGNYAQAKRYFQQCGWKELDGNNDSIPCNKLYRQEQ
                     KNRN"
     gene            complement(4204..5571)
                     /locus_tag="PXA71_001536"
     CDS             complement(4204..5571)
                     /locus_tag="PXA71_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDL5105641.1"
                     /translation="MSIDTILNQINSFVWGPPLLILISGVGLYLTFSLKGIQLSQLGQ
                     AFRYMFKPEKGKGQSGDISAFAALSTALAATIGTGNIVGVATAIHSGGPGALFWMWLI
                     ALFGMATKYAEGLLAIKYRTKDRAGFVAGGPMYYIELGMGKKWRWLAKAFAFFGVLVA
                     LLGIGTFPQVNGITHALESTFDVPIIFSAIILTLIVTAIILGGVQRISKIATIVVPFM
                     AIGYVIAALSVILLNMEKVPQAIITIVHAAFNPQAALGGAVGFTVMQAIQLGVARGIF
                     SNESGLGSAPIAAAAAQTKEPVRQGLISMTGTFLDTIIVCTMTGLVIVISGAWAGDVK
                     GAELTTTAFTQGLNSSFGAIIVTVGLVFFAFTTILGWCYYGERCFVYLTRGRTQYIKL
                     YRLLFIALIASAPFLQLDTIWTLADIVNGLMAFPNLIALIALRKVIISETKDFFARLK
                     TGKAE"
     regulatory      complement(5690..5785)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            complement(5956..7008)
                     /locus_tag="PXA71_001537"
     CDS             complement(5956..7008)
                     /locus_tag="PXA71_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDL5105642.1"
                     /translation="MTHSTKTLVAIASIIIILAGIKLSNEIVVPFLLSLFIAIICSPM
                     IKFMTKRKVPLWLAITILLIVFILGFSFLAGIINNTLQEFTNAIPQYKIQLSSRIQVI
                     LELAHRWHIPLTLSQEEIMSKFDPSSIMNLVSKLLMGLSGALSNIFVIFLVVIFMLLE
                     MPVAKYKLALALSPDDDLSNEKEYINQVLEGVIGYLGVKTFVSLLTGGLVWILLEILG
                     VEYAILWAILTFLLNYVPNIGSILAGIPIVIQALVLNGFSIGLGTLIGIVVINMVVGN
                     ALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMACKVALESNKATQKYA
                     VLFSDLEEVPKEQKYR"
     gene            complement(7055..7480)
                     /gene="ruvX"
                     /locus_tag="PXA71_001538"
     CDS             complement(7055..7480)
                     /gene="ruvX"
                     /locus_tag="PXA71_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDL5105643.1"
                     /translation="MTETTTKTVIAFDFGTNSIGCAVGQSITGTAQGLTTFKAQDGIP
                     NWEEIGKLLQDWKPDMLVVGLPLNMDGTEQPLTQRARKFANRLNGRFNLPVELQDERL
                     TTVEAKAEIFSRGGYKALKKDKVDSISACLILESWFENH"
     gene            complement(7480..8040)
                     /locus_tag="PXA71_001539"
     CDS             complement(7480..8040)
                     /locus_tag="PXA71_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HDL5105644.1"
                     /translation="MLENLQGKFLIATPEMDDDYFERTVVYICEHNPQGAMGVVINTP
                     TDLSVLELITRMDFQMANQRDYKKDQMVLSGGPVNQDRGFIIHTKTANDFIHTYPITD
                     KITLTTSGDVLDSFGTLASPEKFIVCLGCSTWRGSQLEQEIAQNYWIVSDANEKTLFE
                     TGYLERWAEAYEMMGLSSIPSRAGRA"
     gene            complement(8040..8771)
                     /gene="rsmE"
                     /locus_tag="PXA71_001540"
     CDS             complement(8040..8771)
                     /gene="rsmE"
                     /locus_tag="PXA71_001540"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007524366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDL5105645.1"
                     /translation="MRIPRIYQPQPLAGLQSCVLSEDAANHVGRVLRMKQGEQIILFD
                     GSNHVFHATLQAVEKKQIIAKIDSSELDDRESNLPIHLGQVISRGDRMEFTIQKSVEL
                     GVKTITPLWSERCGVKLNDERQDKKLQQWQKIAIAACEQCGRNEIPEIRPIMKLTDWC
                     KEQDDMLKLNLHPRAKYTIRELPNVPKAGVRLLIGSEGGLSAEEIAMTESEGFTEVLL
                     GKRVLRTETASLAAITALQVCFGDI"
     gene            complement(8831..9121)
                     /locus_tag="PXA71_001541"
     CDS             complement(8831..9121)
                     /locus_tag="PXA71_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5105646.1"
                     /translation="MPKKLHNIYYTEEALIDLENIAISVSEFTGYASSGIRILEELEN
                     SINNLAIFPTMGVKGAIINTRELYHNGYRIVCEVKENEISIITIVHCSRLYP"
     gene            complement(9102..9275)
                     /locus_tag="PXA71_001542"
     CDS             complement(9102..9275)
                     /locus_tag="PXA71_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105647.1"
                     /translation="MNNPYHNVSQEYLDYLAKKVKQGKEDIKNGRIYSPEEVRKRVIA
                     AAFRGAENAKKVA"
     gene            complement(9447..10034)
                     /locus_tag="PXA71_001543"
     CDS             complement(9447..10034)
                     /locus_tag="PXA71_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105648.1"
                     /translation="MKRSKKTLVLATTFVAALLAGCQSQSNTLTFSTPTPTAVFNTNN
                     QTAAVNVMTQDLRTSREIASYTKNGEVIRLTAVPEVAAMFQQAVQQDLNAKGFQIVQG
                     AANANVVVNIRKFFATVEQGNLRYKADAQVSVKVAVQGSKGNFSKNFNATRGYEGAFG
                     ASNDEIKKVLDQAYSDVVKAIYNDNEIANAIHQFK"
     gene            10126..10437
                     /locus_tag="PXA71_001544"
     CDS             10126..10437
                     /locus_tag="PXA71_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA/IbaG family iron-sulfur metabolism protein"
                     /protein_id="HDL5105649.1"
                     /translation="MSVEQTIIQKIKTEFQPIFFNVENESYMHSSGRGAESHFKLTLV
                     SDKFEGQRTVARHRAVYACLAEELANGVHALALHLYTQGEWEATGGLVPKSLNCLGVG
                     Q"
     gene            10529..10618
                     /locus_tag="PXA71_001545"
     tRNA            10529..10618
                     /locus_tag="PXA71_001545"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10563..10565,aa:Ser,seq:gga)
     gene            complement(10794..11168)
                     /locus_tag="PXA71_001546"
     CDS             complement(10794..11168)
                     /locus_tag="PXA71_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein NlpE N-terminal
                     domain-containing protein"
                     /protein_id="HDL5105650.1"
                     /translation="MKKIALIGFTTAMLGACSLLPQKSVSGTYAGELPCADCEKIQAQ
                     LTLNADKTYQYDTVYFKDKKEYTYRDKGTYSWEPNKPNVIRLEKASGNLAFQVSEQHV
                     ELCDPNGNTVKNSNNYKLGKVR"
     gene            complement(11193..11495)
                     /locus_tag="PXA71_001547"
     CDS             complement(11193..11495)
                     /locus_tag="PXA71_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF721 domain-containing protein"
                     /protein_id="HDL5105651.1"
                     /translation="MKNSAPKKINDILQNSSLSRIVEKANFINDLNQKIQKRWPESYR
                     GLYRVVNLVDNQLIVSVKNATVRQGLILQQNMLLKQIQTDLPEITQLEFRVNPSVT"
     gene            11616..11936
                     /locus_tag="PXA71_001548"
     CDS             11616..11936
                     /locus_tag="PXA71_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2547 family protein"
                     /protein_id="HDL5105652.1"
                     /translation="MSLFLKHFHRTPFWSQLFLGMVAILALPEIQVAYANESEQETVL
                     NQSFLQYAQSANDIEQQSLFIAELIHKIVEIKPQAVHFCEFFANSYRLDRQNAYPIRA
                     GPQT"
     gene            11995..14721
                     /gene="secA"
                     /locus_tag="PXA71_001549"
     CDS             11995..14721
                     /gene="secA"
                     /locus_tag="PXA71_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDL5105653.1"
                     /translation="MISKLLTSIFGSSNDRTLKRLRKRVAQINKLEPTFEQLSDEALK
                     DKTAEFKQRLADGVSLDSLLPEAFATVREASKRVLGMRPFDVQLIGGMVLTGRNIAEM
                     RTGEGKTLTATLSCYLNALTGKGVHVVTVNDYLARRDAETNRPLFEFLGLTVGVNIPG
                     LPSDAKRAAYQADITYSTNSELGFDYLRDNLAHDKNERFQRELHYALVDEVDSILIDE
                     ARTPLIISGPAEDATQIYQAVDQIIPHLIAQDKEDSEEYTGEGDFTLDLKNKQAHLTE
                     RGMVKVEDFLTQMGLMEEGESLYHPARISLLHHVSAALRAHKLFERNVDYIVKDGEIV
                     IIDEHTGRTMAGRRWSDGLHQAIEAKERVAIQGENQTVASITYQNYFRLYEKLAGMTG
                     TADTEAFEFQQIYGLNTVVIPTNRPVIRDDRTDLMFKSEAEKFAAIITEIRDCIERKQ
                     PVLVGTASVEKSELLSAELTKAGIAHNVLNAKFHAQEAEIVAEAGAPGAVTIATNMAG
                     RGTDIVLGGNWKMEVAKLENPTQEQIDAIKAAWQERYDIVMQAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDPGSSRFYLSLDDALMRIYLNEGKLNMMRKAFTEEGEAMESKLLT
                     KVIASAQAKVEAHNFDGRKHLLQYDDVANEQRKVIYEQRNHLLETDNIASMIESIRQD
                     VFESTINQYIPPQSIEEMWNVPGLEERLRREFGLDLPISHWLETEKDLHEETLRERIL
                     NIAIAEYNAKEEIVGAEVMRNFEKGVMLQNLDELWKEHLASMDYLRKGIHLRGYAQKD
                     PKQEYKKESFAMFTNMLDTLKLNVISILSRIQVRSKEEVEEAQRQQAEMDAASTPVTQ
                     ATDSAAGSREENSAESLSEEELANLNIGRNDPCPCGSGKKYKHCHGNKARYS"
     gene            14808..15206
                     /gene="mutT"
                     /locus_tag="PXA71_001550"
     CDS             14808..15206
                     /gene="mutT"
                     /locus_tag="PXA71_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HDL5105654.1"
                     /translation="MSKPIIQVSAGIIRNEFGQIYLTQRLEGQDFAQSLEFPGGKVDP
                     NETPEEALKRELEEEIGIQVLSAFPYENFCFEYPTKIIEFFFYLVEEWVNEPYGREGQ
                     EGFWIAQSDLDEGAFPPANAQLIKRLKEHA"
BASE COUNT         4578 a         2839 c         3085 g         4732 t
ORIGIN      
        1 gtgtaataca gaagtttatg atatagtgtt gttttgcttt ttgtttactt attctcttct
       61 taagaagtaa catgtttata agattagctt ttaatgtata taaaataaat gtgctaatgt
      121 agtagtgtaa aattggtatt atatgttcag agaagaagct attgaatatc aatcgaaaaa
      181 atggaaaagc acagctgtac tatttagcag agttccagct ttggttgtct tttccatttc
      241 tttctttatc tttactgcct ttattctatt tattgtgttt ggtaattata cccgccgtga
      301 aacggttgtg ggtgaattag tgatgcaatc tcatccgatt ttattatctg ccccaaaatc
      361 cggctatata tccgaaaatt atattcaacc acatcagcag gtaaaaaaaa gggcgatccg
      421 ctggttaaaa ttacgctgga tagaattacg catagcgaaa atattaatgt taattctatt
      481 ctttcgttga aatcacaaat tcaagcaaca gaacaagcga taactgcttt atataagaat
      541 aaatcagaaa ctattaatag ccttgaaaag cagatcaaaa acagtcaaaa aatttatcaa
      601 gataagcaga gttatttagt ggaaattgaa aaaagtatga atgactatgc ggagttggtt
      661 aaacgctatg agaaattatt aaaagtaggg cattccagcc acgatgaagt gaatattcag
      721 aaaagccgtt atttccaaca aaaatcactg tttaatgagc taaagcaaga attaattcaa
      781 ttaaaatcca cccaacttag cttggaaaat gaaattgaaa cccgtaaaac cgaatttaat
      841 aatcagatta ttcgctatga aatgcaaaaa agcgatttaa acattcgttt aatggaattt
      901 gaatctgttt cagatattat tgttaatgcc tctttagatg gaaaaattga aagtaccagc
      961 gtaacagttg ggcaaattat taaagaaaat gacccgcttg cacaaattct gccacagaat
     1021 aaaggaaatt atcagctagt gatgtgggta ccgaatagtg ccatttcatt tattaaacaa
     1081 ggcgatgagg tgaatattcg ctatgaggct tttccgtttg aaaaattcgg gcagtttaag
     1141 ggcaaaatta cgtcaatttc aaccttacca gcttctttgc aagaacttag tttttataaa
     1201 aatctccctg taaatttaga gcaaggtatt ccgctttata aaattctgat tgagcttgcc
     1261 gatcaaaacg taaaatataa tgatacctcc ctttatttta tgagtggaat gaaagccgaa
     1321 gccacgttat ttttagaaaa acgtaaactg tatgagtgga tatttttccc tatgtatcaa
     1381 ttacgcaaaa atatggagca ataatgacag gaattaagca gttaaaattt gattttcgga
     1441 gaagaatacc tgttattttg caaactgaaa cagctgaatg tggcttagcc tgtttagcga
     1501 tgatgttggg ctattacgat aaaaacacca atttatttga attgcgaagt caatatggta
     1561 cttcctctcg tggcgtaacg ctgcatactt taatttctat tgcaaatgac tgtggtttaa
     1621 taactcgccc tctttctcta gagttagatg aagtaccaca acttcgtctg ccttgtattc
     1681 ttcattggga ttttaatcat tttgtagtat taactcacgc aagtgaaaaa cagtttatta
     1741 tccacgatcc tgctttcggt aaacgtaaat tatcccgtgc tgaattttcc aaccatttta
     1801 ccggagtcgc tttagaagtt tggtctgaag ttaaatttga gaaaagcaac aatgaaaata
     1861 ccattagttt gtatgaaacc ttaaagcata tttctggcat aaaaggtgca ttagtgaaaa
     1921 tttttgccct ttcaatgctc attgaactca ttgccttatt gatgccaatt ggaacacagt
     1981 tagtgatgga tcacgttatg caagcgaaag atcaatcatt acttttaatt atctgtattg
     2041 ggctattttt atttaccctt tttcgcacaa tggtcagtat gtttagggct tgggtttcct
     2101 tgaaaatgaa ttatttaatt gattttcaat ggacagccag tttcttttct catctcttaa
     2161 aattaccgct tgatttcttt gaaaacgcca agtaggtgat attcattccc gatttagttc
     2221 attaaaaacc attcagaaaa ctctaacttc aagcattatt accacgatta ttgatacgat
     2281 tatgataatc agtttaatta ttatgatggt gttatatggc ggttggctct tttgggtagt
     2341 attagctttt tcctttatct attttattct tcgaatggtt acttatttag tttatcgtca
     2401 actgaatgaa gagcagatta ttaaaggagc aaaagcccat tcgcatttta tggaaacttt
     2461 atatggtatt acaacgttaa aatcattagg attggaaaat aaacgacaag aacagtggat
     2521 gtcgctcaat gcggatgctt ttaacacatc aattaaggta actaaatttg atatgctgtt
     2581 ttccggtatt cataccttta tttctaccat cgaacagatt ttaattcttt ggattggggc
     2641 gacaatgatg attgaaaatg tgatgacatt aggaatgttt gtcgctttta atgcctatcg
     2701 aggctctttc tcttcacgaa tggggaattt aattgatatt atttttagcc taaaaattct
     2761 ttcattacat agagagcgga ttgcagacat tgctttaaat gaagtcgaag atgaaagtaa
     2821 atatcaagaa ctcagatttg aacataacca aacagatata gaagttaaag acctttgttt
     2881 caaatacgat cctttttcta aaaatgtgct tgaaaatgtc aatttagtga tcagaagtgg
     2941 ggaaagtgtt gctattaccg caccatcagg ttatggcaaa acaacgttat taaaattaat
     3001 tgcaggttta ttaaaaccaa cctcaggttc tgtgtatttt aacggcattg atatttatca
     3061 gttaggatta agtcaatatc ggagccaaat tgcttgcgta ttacaggaag ataaattctt
     3121 ttctggttcc attttagaga atattgttag ttttgaaagt aattatgatc gagaatgggc
     3181 tatcgaatgt agcaaacttg cgaatattca caatgatatt atggcaatgc cgatgaatta
     3241 tgaaacctta ttaggagaat taggaaataa tttgtctggc ggacaaagat aacgattgtt
     3301 tattgctcga gctttatata aaaagcctaa aattcttttg atggatgagg cgactagcca
     3361 tttagatgaa gaaaatgaga agcttgtcaa tcaagctatt tcacgaatga agataacaag
     3421 gattattatt gctcatagac aatcgactat tcagtcggcg gatagaatta ttgccctgaa
     3481 tgacaggtaa attaattcct atttttctgt tcttgccgat aaagtttatt gcacggaatg
     3541 ctgtcgttgt tgccgtctag ctctttccag ccgcattgtt gaaagtagcg ttttgcctgt
     3601 gcgtaattgc cgatttggtt gcagcttaat ttaatttggc aatcaatcgt tggtggctgg
     3661 tttgcaatat tttccggttt tttgaccgct tgtggtaagg ttgaggtgtg tgtttttcgc
     3721 cattggctcg ggttaatcgg gaatttgtcc tgccataagc cgattttagc ttgctgtgct
     3781 tgatcttgtg cttcgatata ttcccgcttt gtggtgtaag cccacgccat accgttttcc
     3841 actaaggcta agttgatgtt tttatcgttt aagtagaggg tggcaagtaa tcgttggtaa
     3901 cgatcatagc ctgaaactat ggcagtaatg ttttgttgaa acacgaattg agccagagct
     3961 tgtttggctt tgttgccgta aggctgcgct tgttcggggg catcaatatg ttgtagcctt
     4021 atttttagtg gtgttttatt gaccaaacaa gtgagggtgt cgccatcgct aatgccaacg
     4081 actttgcatt gtagttggcg ttcggcggca tataccgatg agaaaaataa gctaaaaatc
     4141 agggcgtaaa gatatttcat tattaaaaaa gagagggcta ataagccctc attctatcat
     4201 tttttattcg gctttacctg ttttaaggcg agcgaagaaa tcttttgttt cactaataat
     4261 cactttgcgt aacgcaatca atgcgattaa attcgggaat gccattaagc cgttcacgat
     4321 gtctgccagc gtccaaattg tatcgagttg taaaaatgga gcagaggcga tgagtgcaat
     4381 aaacagcaag cggtataatt taatgtattg ggtgcgacct cgagtgagat agacaaaaca
     4441 gcgttcaccg tagtagcacc agcctaaaat ggtggtaaag gcaaagaaga ctaaaccaac
     4501 tgtcacaatt atcgcaccga atgagctgtt taaaccttga gtaaaagcgg ttgtggtgag
     4561 ttctgcgcct tttacatcgc ctgcccaagc ccctgaaatc acaattacta agccggtcat
     4621 tgtgcagacg ataatagtgt ctaagaacgt gccggtcatt gaaattaggc cttgacgtac
     4681 cggctctttg gtttgggcgg cagcggcggc gatgggggca gagcctaatc ctgattcatt
     4741 cgagaaaata ccacgtgcaa cccctaattg aatcgcttgc atgacggtga atccgactgc
     4801 tccgcctaat gccgcttgtg ggttgaaagc tgcgtgtaca atagtaataa ttgcttgtgg
     4861 gactttttcc atattcagta gaatgacgga taaagcggcg atgacatacc caatagccat
     4921 aaacggtaca acaatggttg caattttaga aatccgctgc acgccaccta aaataatagc
     4981 ggtaacgata agggttaaaa tgatcgcact gaagataatc ggcacatcaa aggtgctttc
     5041 taaggcgtgg gtaatgccat tcacttgggg gaacgtgcca ataccaagca aagcgaccaa
     5101 tacgccaaaa aacgcaaagg ctttagcaag ccaacgccat ttttttccca ttcccagttc
     5161 gatatagtac atcggaccac cagccacaaa tccggctcta tctttagttc gatatttaat
     5221 tgccaataag ccttcggcat atttcgtagc cataccgaat aaggcaatca gccacatcca
     5281 aaataatgct ccaggcccgc ccgaatgaat agcggttgcc acgccgacaa tattccccgt
     5341 gccgatagta gctgctaggg cagtggaaag ggctgcaaaa gcggaaatat cgcccgattg
     5401 ccctttgcct ttttccggtt tgaacatata gcgaaaggct tgccctagtt ggcttaattg
     5461 aatacctttg agtgaaaagg ttaaatataa ccctacgcct gaaattaaaa tcaggagtgg
     5521 cgggccccaa acaaaactgt tgatttgatt aagaatagtg tcgatagaca tttgatgttc
     5581 ctcgtaaaaa ctgcttacaa ggaaagaaaa ggaatgcaag agacaagcgg tcaaaaaacg
     5641 gaaatttttt gcaaagaatt agcaaaaaaa caccgcttgt atcgtataac ttttctcccc
     5701 tgtccttttg cctgagcgtt tcacacattg ctgtattttc gccttcggcg gcggatttta
     5761 atccgctctc tccaagggtt cgtccagtaa cagtccccgc agtgttcact gcacctgaaa
     5821 gagtttacct cgtcggtgaa atgttaattc atttctctcc agctaccttc atccgaacaa
     5881 tctaatttat tttataatgt aaaataaaaa agatttgcca aattctagca actcttttgc
     5941 ttccgtcaag tgaatttaac gatatttttg ttctttcggt acttcttcta aatcgctaaa
     6001 taatacggca tatttttggg tggctttatt ggattctaat gccactttac acgccatcgt
     6061 aagtggaaca gaaagtaaca ttcctacggt gccaagtaac cacccccaaa atagaagtga
     6121 gaggaacact acaagggtag aaagcccgag tttcttgccc attaatttag gttcaagcgc
     6181 attacccaca accatattaa tcacgacaat gccgattaaa gtgcctaatc ctatagaaaa
     6241 gccattgagt accaaggctt gaatcacaat tggaattccc gccaaaatag agccgatatt
     6301 cgggacgtag ttaagcagga aggttagaat tgcccataaa atcgcatatt ctacgcctag
     6361 aatttctagt aagatccaaa ctaaccctcc ggtgagtagg ctcacaaagg ttttaactcc
     6421 aaggtaacca atcacccctt caagtacttg gttgatatac tctttttcgt tgcttaaatc
     6481 atcatctggg ctaagtgcga gggctaattt atatttggca accggcattt ccaatagcat
     6541 aaaaatgacg actaagaaaa tcacaaaaat attcgataat gcaccggata gccccattag
     6601 cagtttgctg accaaattca ttattgagct tgggtcaaat ttgctcataa tctcttcttg
     6661 tgagagggta agtggaatat gccatctatg ggcgagttct agaatcacct ggattctaga
     6721 tgaaagctga attttgtatt gcggaatagc attagtaaat tcttgcaagg tgttattaat
     6781 aatgcctgct aagaaactga atcctaagat aaaaacaata agtaaaatgg taatggctaa
     6841 ccataatggc actttacgct tagtcataaa tttgatcatt ggtgaacaaa taatggcaat
     6901 aaatagcgaa agtaaaaatg gcacaacaat ttcattggat aatttaatcc ctgccagaat
     6961 aatgataatg gaggctatcg ccacgagagt tttggtggaa tgtgtcataa tttttccttt
     7021 tacaagcggt taaaaatcag caatttttta caaattagtg attctcaaac caactttcta
     7081 aaattaaaca agcggaaatg gaatccactt tatccttttt taatgctttg taaccaccac
     7141 gagaaaaaat ttccgctttt gcttcaacag tagtgaggcg ttcatcttgt agctcaaccg
     7201 gcagattaaa gcgtccgttt aagcgattgg caaattttct ggcacgctga gttaaaggct
     7261 gctctgtgcc gtccatattc aagggtagcc caacaaccag catatctggt ttccaatctt
     7321 gcaagagttt tccgatctct tcccagtttg gaataccgtc ttgggcttta aatgtagtta
     7381 aaccttgagc tgtgccggta atactttgtc caactgcaca gccgatgcta tttgtgccaa
     7441 aatcaaaggc aatcacggtt tttgttgtgg tttctgtcat taagctctcc cagctcttga
     7501 cggtatgctt gaaagcccca tcatttcata ggcttctgcc caacgctcta aataaccggt
     7561 ttcaaacagc gttttttcat tcgcatcaga cacaatccaa taattttgag caatttcttg
     7621 ctcaagctgg ctgccacgcc aagtggaaca acctaaacac acaataaatt tttcaggtga
     7681 agccagtgtg ccaaaggagt ctaacacatc accggaggta gtgagcgtaa ttttatcggt
     7741 gatcggataa gtgtgaataa aatcattggc ggttttggtg tgaataataa agccacgatc
     7801 ttgatttacc ggcccaccgc ttaacaccat ttggtctttt ttgtaatcac gctggttcgc
     7861 catttggaaa tccattcggg taatcagctc tagaaccgac agatcggtag gagtgttaat
     7921 tactactccc attgcacctt gcggattatg ttcgcaaata tagaccaccg tacgctcgaa
     7981 atagtcatcg tccatttccg gcgtggcaat taaaaattta ccttgtaaat tctctaacat
     8041 taaatatctc caaaacaaac ttgtaacgca gtaattgccg caagtgaggc ggtttctgtg
     8101 cgtaacactc gtttacccag taatacttca gtaaaacctt cgctctcggt catggcgatt
     8161 tcttcggcag ataatccgcc ctcagagcca atcagtaaac gaacaccagc tttcggcaca
     8221 ttcggcagtt cacgaatggt atatttggct cttgggtgca aattcagttt caacatatcg
     8281 tcttgttctt tgcaccagtc ggtgagtttc ataatcgggc gaatttcagg gatttcattt
     8341 cgtccgcatt gttcacaggc ggcaatcgca attttctgcc attgctgtaa ttttttatct
     8401 tgccgttcat cattgagttt cacgccacaa cgttccgacc aaagtggggt aatagttttt
     8461 acccccagct ccaccgattt ttgaatggta aattccattc tatcgcctcg ggaaatcact
     8521 tgccctaaat ggatcggcag gttggattct cggtcatcta attcacttga atcaattttt
     8581 gcaataattt gctttttttc gaccgcttgt aacgtagcgt ggaaaacgtg gtttgaacca
     8641 tcaaataaaa tgatttgctc tccttgtttc attcgtagca ctcgcccaac gtggttagcg
     8701 gcatcttcac ttaacacgca actttgaaga ccagctaacg gctgtggttg gtaaattctt
     8761 gggattctca taattatcta gttataaatt aaaggcagac gattgtctgc cataggtaag
     8821 ttaaaacggg ttaaggataa agtcttgaac aatgcacaat agtaataatc gaaatttcat
     8881 tctctttaac ttcacacact attctatagc cgttatgata tagttctctc gtattaataa
     8941 ttgcaccttt tacacccatt gtaggaaaaa tggctaaatt attaatacta ttttccaatt
     9001 cttctagtat cctaattcca ctacttgcat aaccggtaaa ttcactaact gagatggcaa
     9061 tattctctaa atctattaag gcctcttcag tataataaat attatgcaac ttttttggca
     9121 ttttcagcac ctctaaaagc ggcagcaata actctttttc tgacctcttc gggtgaataa
     9181 atccgaccgt ttttaatatc ttcctttcct tgctttactt ttttagcaag ataatcaaga
     9241 tattcttggc taacattatg ataaggatta ttcatatttt tcctccctgc gatgagtctc
     9301 tattgtgggg gctactgatc gtttaatcaa gttaatttat cttatttttc gagccacatc
     9361 acaaaacgag aaaacaacaa gcggtcattt ttccacgttt tttgcaaaaa atcgaagaaa
     9421 gatgaccgct tgccagaaaa aattaattat ttgaactggt gaattgcatt ggcgatttca
     9481 ttatcgttgt aaatagcttt caccacatca gaataggctt ggtctaacac tttcttgatt
     9541 tcatcattgc ttgcaccaaa tgcaccttcg taaccacggg tagcgttgaa gtttttgcta
     9601 aagtttcctt tagaaccttg cactgccact tttacactca cttgtgcatc ggctttgtag
     9661 cgtaagtttc cttgttctac tgtggcaaag aatttacgaa tattcactac cacattggca
     9721 ttcgctgcac cttgtacaat ttggaaacct tttgcattca ggtcttgttg gacggcttgt
     9781 tggaacattg cagcaacttc aggcactgcg gttaaacgaa tgacctctcc gtttttagtg
     9841 tagcttgcga tttcacgcga ggtgcgtaaa tcttgtgtca ttacattcac cgcagccgtt
     9901 tgattgtttg tgttaaatac agcagttggc gttggggtag agaatgttaa tgtgttggat
     9961 tggctttggc agccggctag taatgcggca acaaaagtag tggctaacac taacgttttt
    10021 ttagagcgtt tcatagtaaa tccttctata ttgaataaat ttcgagaaaa tttctgctta
    10081 gtatagtatt atttcgtttt gattttcaat gaacgagagc aaaaaatgtc ggtagaacag
    10141 acaattattc aaaaaattaa gacagaattt cagccgattt tctttaatgt cgaaaacgaa
    10201 agctatatgc acagctcagg tagaggagca gaatcgcatt ttaaattaac tttggtgtca
    10261 gataaatttg aagggcagag aacagttgca cgtcatcgtg ctgtctatgc ttgcttagct
    10321 gaggaattag ctaatggcgt tcacgcactt gctttgcacc tatataccca aggtgaatgg
    10381 gaagcgactg gcggacttgt acctaaatcg ctaaattgct taggtgttgg gcaataagtg
    10441 gataaaaatg atttatttta ttttgtgaag aaaatacttg aaagagccgt gtaaaattgc
    10501 tatatttacg ccatcttttt gttgattcgg tgagatgtcc gagtggttga aggagcacgc
    10561 ctggaaagcg tgtatatggg aaactgtatc gggggttcga atccccctct caccgccatt
    10621 catactgaaa gattccttac tgttttcata gatatttcct tggttaagtt aaagtagata
    10681 atactttttc atttttaggt tatccccgag caaacattgc ttgggggttt ttttatgcga
    10741 tcggcgatag attacaaaga aaaaggattc ctaagaatcc tttttatctg cttttaacgt
    10801 actttaccta gtttatagtt attgctgttt tttaccgtgt tgccatttgg gtcgcaaagt
    10861 tcaacgtgtt gttcagacac ttggaaggca agattgcctg atgctttttc cagacgaatc
    10921 acatttggct tattgggttc ccaactgtat gtgcctttgt ctcggtaagt gtattctttt
    10981 ttatctttaa aatataccgt atcatattgg taggttttat ctgcatttaa ggttagctgg
    11041 gcttggattt tctcacagtc agcacacggt aattcacctg cataagtacc gctaacgctt
    11101 ttttgtggta gcaatgagca agcccctagc attgcggtgg taaaaccaat gagtgcgatt
    11161 tttttcatac tattttcctc ttcaaaatta aattatgtaa cactcggatt tactctaaat
    11221 tcaagttggg ttatttcagg taaatcggtt tgtatctgtt ttagtaacat attttgttgc
    11281 aagattaaac cttgccgtac ggttgcattc ttaacgctca caataagctg attatcaact
    11341 aaattcacta ctcggtaaag cccacgataa gattctggcc atcttttctg aattttttgg
    11401 tttaaatcgt taatgaagtt tgctttttcg acaatacggc ttaagcttga gttctgtaaa
    11461 atgtcattaa tctttttagg tgctgaattt ttcatctgtt tctttacatt tcgtcttatt
    11521 ttaggcttga ttttacgata cttgacccaa taatttactc attcggcttt actttagcgt
    11581 ataattagcc caattttttc atttatctta atttaatgag cttattttta aaacactttc
    11641 atcgaacgcc tttttggtcg caactctttt tgggaatggt tgcgatactt gctttacctg
    11701 aaattcaggt tgcgtacgcc aatgaaagtg aacaggaaac cgttcttaat caatcttttc
    11761 ttcaatatgc tcaatccgct aatgatattg agcaacaatc gctttttatt gcagagttaa
    11821 tccataaaat tgtggaaatt aaaccacaag cggtgcattt ttgcgaattt tttgcaaact
    11881 cctaccgctt ggatagacaa aatgcttacc ccattcgagc cgggccacaa acctaaatat
    11941 aatttaattt taccattaat tgattaaccc atttttatat ttaggaataa cacaatgatt
    12001 tcaaaattac tgacttctat ttttggctca agcaacgatc gcactttaaa acgtttaaga
    12061 aagcgagtgg cacaaattaa taagcttgaa ccaaccttcg agcaattatc tgatgaggcg
    12121 ttaaaggata aaacagcgga gtttaagcaa cgccttgcag atggtgtatc gctagatagc
    12181 ctattacctg aagcttttgc gacagtgaga gaagcaagca aacgagtatt aggtatgcga
    12241 ccatttgatg tacagctgat cggcggtatg gtgctaacgg ggcgtaatat tgcagaaatg
    12301 cgtactgggg aaggtaaaac cctaactgca actttatctt gttatttgaa tgctttgacc
    12361 ggtaaaggtg ttcatgttgt tacggtgaat gattacctcg cccgccgtga tgcggaaacc
    12421 aaccgtccgt tatttgagtt tttaggctta accgttggag tgaatattcc ggggttacct
    12481 tccgatgcaa aacgtgctgc ataccaagca gatattacct attcgactaa cagcgaatta
    12541 ggttttgatt acttgcgtga taacttagct cacgataaaa acgaacgttt ccaacgtgag
    12601 ttacactacg cattagttga tgaagtagac tctattttaa ttgatgaagc tcgtacgccg
    12661 ttaattattt cagggcctgc ggaagatgcg acccaaattt atcaagcggt agatcaaatc
    12721 attccgcatt tgattgctca agataaagaa gacagtgaag agtacaccgg tgagggcgat
    12781 tttaccttag atctgaaaaa caaacaggct catttaaccg agcgtggtat ggtgaaagta
    12841 gaggatttct taactcaaat ggggttaatg gaagagggcg aaagtttata tcaccctgct
    12901 cgtatttcgc tgttacacca tgtgagtgca gcattgcgtg cccataaatt atttgaacgc
    12961 aacgtagatt acattgtaaa agacggtgaa attgtgatta ttgatgagca caccggtcgt
    13021 acaatggctg gacgtcgttg gtctgacggc ttacaccaag cgattgaagc taaagagcgt
    13081 gtggctattc agggcgaaaa ccaaactgtt gcctcaatta cttaccaaaa ctatttccgt
    13141 ttgtacgaaa aattagccgg tatgactggt acggcagaca ccgaagcctt tgaattccag
    13201 caaatttatg gcttaaatac ggtggtgatt ccaaccaaca gaccggtgat ccgtgatgac
    13261 cgtacagact taatgtttaa aagcgaagcg gagaaatttg cggcgattat tactgaaatt
    13321 agagactgta tcgagcgtaa acagcctgtt ttggttggca cagcatcggt ggaaaaatca
    13381 gagttattat cggcagaatt aaccaaagcc ggtattgctc ataacgtatt aaatgcgaaa
    13441 ttccacgctc aagaggctga aattgtagcg gaagcgggag ctccgggggc ggttactatc
    13501 gcaaccaata tggctggtcg tggtacggat attgtgcttg gcggtaactg gaaaatggaa
    13561 gtagccaagc ttgagaaccc gacacaagaa caaattgatg cgattaaagc tgcgtggcaa
    13621 gagcgttatg acatcgtaat gcaagccggt ggtttacata ttattggtac agaacgccac
    13681 gaatcccgcc gtatcgacaa ccagttgcga ggtcgttctg gtcgtcaagg tgacccgggg
    13741 tcatcacgtt tctatctctc tttagatgat gccctaatga gaatttacct caatgaaggt
    13801 aaattaaata tgatgcgtaa agcctttacc gaagaaggtg aagcgatgga gtctaaactg
    13861 ttaaccaaag tgattgcctc tgcacaggcg aaagtagaag cgcataactt tgatgggcgt
    13921 aagcatttat tacaatatga tgatgttgcc aatgaacagc gtaaagtaat ttacgaacaa
    13981 cgcaatcatc tattagaaac agataatatt gcctcaatga tcgaaagcat tcgccaagat
    14041 gtatttgaaa gcacgattaa ccaatatatt ccgcctcaat ctatcgagga aatgtggaat
    14101 gtgccgggct tagaagagcg tttacgccgt gaatttgggt tggatttacc gatttctcac
    14161 tggcttgaaa ctgaaaaaga cttgcacgaa gagactttgc gtgaacgtat cttaaatatt
    14221 gcgattgcag agtacaatgc gaaggaagaa atagtaggcg cagaggtaat gcgtaatttt
    14281 gaaaaaggtg taatgctaca aaacttagat gagctttgga aagagcatct agcctcaatg
    14341 gattatttac gcaaaggtat tcacttgcgt ggttatgcac aaaaagatcc gaagcaagag
    14401 tataaaaagg aatcttttgc gatgtttacc aatatgcttg ataccttaaa attgaatgta
    14461 attagcattt taagccgtat tcaagtgcgt agcaaagaag aggtggaaga agcgcaacgc
    14521 cagcaagctg aaatggacgc tgcaagtacg ccagttacac aagctaccga ttctgctgct
    14581 ggtagtagag aagaaaatag cgcagagagc ttaagtgaag aagagttggc aaacttaaat
    14641 attggtcgaa atgacccttg cccttgtggt tcgggcaaaa aatataagca ttgccatggt
    14701 aacaaagcga gatattcgta attaacaagc ggtcatattc agtcaggaat ttgcaaattt
    14761 tctgcttaat atgaccgctt gaatttatag aaagagtgaa ggaaactatg tcaaaaccga
    14821 ttattcaagt ctcagcaggg attattcgta acgaatttgg gcaaatttac ttaacccaac
    14881 gtttagaagg gcaagatttt gctcagtctc ttgaatttcc cggggggaaa gtcgatccca
    14941 atgaaacccc tgaagaagca ctaaaacgag aattagaaga agaaattggt attcaagtgt
    15001 taagcgcttt tccgtatgaa aatttttgct ttgaatatcc aacaaaaatc attgaatttt
    15061 tcttttattt ggtggaagag tgggtaaatg aaccttacgg aagagaaggg caagaaggtt
    15121 tttggatcgc acaatcggat ttagatgagg gagctttccc accggcaaat gcccaattaa
    15181 ttaaacgctt aaaagaacac gcataatttg tattgagaac tgtatctaaa gtaa
//
LOCUS       DANLRW010000061        15018 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.061, whole genome shotgun sequence.
ACCESSION   DANLRW010000061 DANLRW010000000
VERSION     DANLRW010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 15018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15018
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.061"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            38..457
                     /locus_tag="PXA71_001551"
     CDS             38..457
                     /locus_tag="PXA71_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS sensor domain-containing protein"
                     /protein_id="HDL5105655.1"
                     /translation="MVPSNEAVLKAVHDTLVISTTDLQGVITYANDLFCKLTGFTREE
                     LIGQPHNIVRHPAVPKEVYKDMWDTIQAGKIWTGIVPNCGKGGVVYVVDTTVQPMFDE
                     TGKITGYISVRRVINDLMTNFEAVESAKEIFDDFYGE"
     gene            528..2084
                     /locus_tag="PXA71_001552"
     CDS             528..2084
                     /locus_tag="PXA71_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite reductase flavoprotein subunit alpha"
                     /protein_id="HDL5105656.1"
                     /translation="MSLIPHIHIAYGSESGNAEKLAQQLAIQPFLLPYSPTLSTLNET
                     DLSQLSAESLLLIVTSSFGDGEPPENADEFAEKLENLTACNLQYAIFGLGDITYDKFC
                     GYSKQLDSLLQQKQAKAVIARVDADLNYQEIFKQWLPLVEQALHSTNKETIQHSLSVQ
                     AYGEEMAYQAEVLEIKHLANSSPAVYHIRLSLKESGIFYQAGDLIYVKVQQPDRLLNE
                     YAEWFNDQNAVALLRHKELRLLSKNVLRDIQKICGSNELKDLTKISNKKALEQYVYGR
                     DLLDVLRDFDPNKSVTLADLEPILSNLAARAYSISSCGKTHPDYVDLCIRHVSYHLNG
                     RDYQGTASGYLSELQAGDFVSIFANANPNFRLPETLTAPVVMIGSGTGIAPHIAFLQA
                     LEQQYQGVESYLFFGERYRDKDFLYQTELENYLAKGTLTQLFTAFSRDQAEKFYVQDA
                     LSQQAELVWHLIQQGAYFYICGSKAMSKAIDAELIKIADQIGGDPYIDDFNNIIAKLV
                     AEGRLMRDVY"
     gene            complement(2142..2399)
                     /gene="rpsQ"
                     /locus_tag="PXA71_001553"
     CDS             complement(2142..2399)
                     /gene="rpsQ"
                     /locus_tag="PXA71_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005759643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDL5105657.1"
                     /translation="MTDKIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKL
                     HVHDENNEAKLGDVVEIKECRPISKTKSWTLVRVVEKAVVA"
     gene            complement(2399..2590)
                     /gene="rpmC"
                     /locus_tag="PXA71_001554"
     CDS             complement(2399..2590)
                     /gene="rpmC"
                     /locus_tag="PXA71_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDL5105658.1"
                     /translation="MKAQELRNKSVEELNGELVNLLGEQFKLRMQAATGQLQQTHQLK
                     QVRRSIAQVKTVLTEKAGE"
     gene            complement(2590..3000)
                     /gene="rplP"
                     /locus_tag="PXA71_001555"
     CDS             complement(2590..3000)
                     /gene="rplP"
                     /locus_tag="PXA71_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDL5105659.1"
                     /translation="MLQPKRTKFRKVHKGRNRGIAGGTEVSFGSFGLKAIGRGRLTAR
                     QIEAARRAMSRAVKRQGKIWIRVFPDKPITEKPLEVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVSEEVARNAFALAAAKLPFKTTFVTKTVM"
     gene            complement(3014..3721)
                     /gene="rpsC"
                     /locus_tag="PXA71_001556"
     CDS             complement(3014..3721)
                     /gene="rpsC"
                     /locus_tag="PXA71_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDL5105660.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLN
                     KELANASVSRITIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQIN
                     IAEVKKPELDAKLVADSIASQLERRVMFRRAMKKAVQNAMKLGAKGIKVEVSGRLGGA
                     EIARSEWYREGRVPLHTLRADIDYSTAEAHTTYGVIGVKVWIFKGEILGGMAAVIESE
                     KEPAAQPKKAPRGKGRK"
     gene            complement(3741..4073)
                     /gene="rplV"
                     /locus_tag="PXA71_001557"
     CDS             complement(3741..4073)
                     /gene="rplV"
                     /locus_tag="PXA71_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDL5105661.1"
                     /translation="METIAKHRYARTSAQKARLVADLIRGKKVSVALEILTFTNKKAA
                     TLVKKVLESAIANAEHNDGADVDDLKVAKIFVDEGPSMKRVMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            complement(4084..4359)
                     /gene="rpsS"
                     /locus_tag="PXA71_001558"
     CDS             complement(4084..4359)
                     /gene="rpsS"
                     /locus_tag="PXA71_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDL5105662.1"
                     /translation="MPRSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSM
                     IGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHAADKKAKK"
     gene            complement(4390..5211)
                     /gene="rplB"
                     /locus_tag="PXA71_001559"
     CDS             complement(4390..5211)
                     /gene="rplB"
                     /locus_tag="PXA71_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDL5105663.1"
                     /translation="MAIVKCKPTSAGRRHVVKVVNAELHKGKPFAALLDTKSKTGGRN
                     NLGRITTRHIGGGHKQHYRLIDFKRNKLDIPGVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLTAGDQIQAGASAPIKVGNALPMRNIPVGTTVHNVELKPGKGGQIARSAGA
                     YVQIIAREGNYVTLRLRSGEMRKVLAECTATIGEVGNSEHMLRVLGKAGANRWRGIRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRHNKRTDKFIVRRRGK"
     gene            complement(5230..5535)
                     /gene="rplW"
                     /locus_tag="PXA71_001560"
     CDS             complement(5230..5535)
                     /gene="rplW"
                     /locus_tag="PXA71_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDL5105664.1"
                     /translation="MIQQERLLNVLKAPHISEKATNNAEKGNTIVFKVALDANKVEIA
                     NAVEELFEVKVDSVRTVVVKGKTKRRGAKVGRRSDWKKAYVTLQEGQSLDFVEGAAE"
     gene            complement(5532..6134)
                     /gene="rplD"
                     /locus_tag="PXA71_001561"
     CDS             complement(5532..6134)
                     /gene="rplD"
                     /locus_tag="PXA71_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDL5105665.1"
                     /translation="MELQVVGANALTVSETTFGREFNEALIHQVVVAYAAGARQGSRA
                     QKTRAEVSGSGKKPWRQKGTGRARSGDIKSPIWRSGSVTFAAKPQDHSQKVNKRMYRG
                     AIKSILSELVRQDRLVVVEKFEIDAPKTKVLAQKLKDMALNDALIITANVDENLFLAA
                     RNLYKVDVRDVQGIDPVSLIAFDKVVVTVDAVKQIEEMLA"
     gene            complement(6150..6779)
                     /gene="rplC"
                     /locus_tag="PXA71_001562"
     CDS             complement(6150..6779)
                     /gene="rplC"
                     /locus_tag="PXA71_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDL5105666.1"
                     /translation="MIGLIGRKVGMTRVFTEDGVSIPVTVIEIEANRVTQVKTLENDG
                     YSAIQVTTGSKKASRVTKPEAGHFVKAGVEAGRGLWEFRTTEGEEFTLGQEINVDIFT
                     DVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKK
                     MAGHLGAERVTVQSLEVVRVDVERKLLLVKGAVPGATNGDVIVKPAVKA"
     gene            complement(6805..7116)
                     /gene="rpsJ"
                     /locus_tag="PXA71_001563"
     CDS             complement(6805..7116)
                     /gene="rpsJ"
                     /locus_tag="PXA71_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDL5105667.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
     gene            7560..8060
                     /locus_tag="PXA71_001564"
     CDS             7560..8060
                     /locus_tag="PXA71_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HDL5105668.1"
                     /translation="MQTINEIKEEIYPIFEPIIGTIRLKTYFSYYAVFKDGLMIALYQ
                     NGATYLRIAKKDIEYIRQYPKTCILCDEKIGIQSRKFHYIPQVLIDDTPKFSSLLFGI
                     IEELRTEKYKISQKRATQIRNLPNMNLKLERMLKKIGIHSIHDFTQEGYMSTFIKLIL
                     HRRLTV"
     gene            8348..9742
                     /gene="fumC"
                     /locus_tag="PXA71_001565"
     CDS             8348..9742
                     /gene="fumC"
                     /locus_tag="PXA71_001565"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDL5105669.1"
                     /translation="MEFRIEKDTMGEVQVPADKYWAAQTERSRNNFKIGPEASMPAEI
                     IEAFGYLKKAAAYANHDLGVLAVEKRDLIAKACDEILANKLDDQFPLVIWQTGSGTQS
                     NMNVNEVVANRAHVLNGGKLGEKSIIHPNDDVNKSQSSNDTYPTAMHIAAYKKVVEHT
                     LPCVKRLQKTLAEKAEAFKDVVKIGRTHLMDATPLTLGQEFSAYAAQLAFGIKALENT
                     LPHLRELALGGTAVGTGLNTPQGYDVKVAEYIAKFTGLPFVTAQNKFEALATHDAIVE
                     THGALKQLAVSLYKIANDVRLLASGPRSGIGEILIPENEPGSSIMPGKVNPTQCEAMT
                     MVCAQVLGNDVTISFAGTQGHFQLNVYKPVMAYNFLQSAQLLGDACVSFDEHCAVGIE
                     PNYPRIKQQLDQSLMLVTALNTHIGYENAAKIAKTAHKNGTTLKEEAINLGLVTAEQF
                     DEWVRPEDMVGSLK"
     gene            9869..9979
                     /locus_tag="PXA71_001566"
     CDS             9869..9979
                     /locus_tag="PXA71_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005696979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HDL5105670.1"
                     /translation="MKKLILIALVTTLGLSACGVKGPLYFPEQAPKHEQK"
     gene            10084..11334
                     /gene="lysA"
                     /locus_tag="PXA71_001567"
     CDS             10084..11334
                     /gene="lysA"
                     /locus_tag="PXA71_001567"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDL5105671.1"
                     /translation="MNHFEYKNNQLFAEEVAIADIIEQYGTPAYVYSRSTLERHWHAF
                     NNAFGSHPHLVCFAVKSNSNIALLNVMARLGSGFDIVSQGELERVLAAGGEASKVVFS
                     GVAKSHSEIKRALEVGIRCFNIESVSELHRINQVAGELGKIAPISLRVNPDVDAHTHP
                     YISTGLKENKFGVSVTQAREVYRLAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLI
                     ILMEQLREDGIELHHLDLGGGLGVPYNGEEPPHPTEYAKALLEKLKGYENLEIIIEPG
                     RAITANAGILVTKVEYLKQNEDRNFAIVDTGMNDMIRPALYEAYMQITEVDKTLNRDK
                     AVYDVVGPICETSDFLGKQRELAISEGDLIAIRSAGAYGAAMSSTYNSRPQAAEIMVD
                     GNQAHLIKARATFADLWRLEKLLP"
     gene            11348..11977
                     /locus_tag="PXA71_001568"
     CDS             11348..11977
                     /locus_tag="PXA71_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase N-terminal
                     domain-containing protein"
                     /protein_id="HDL5105672.1"
                     /translation="MKLYGLTGACSFVPHVALEWVKLRANQDYAFQAVSREFIKSAEY
                     LALNPRGNVPLLVDGDLALTQNQAIVHYLDELYPEAKLFGSKTARDKAKAARWLAFFN
                     SDVHKSFVPLFRLPSYAEGNETLTKTIRQQSAEQILEQLAFANAHLENHIFFGEEISV
                     ADAYLYIMLNWCRLLGLDFSHLSQLSAFMQRVEADQGVDNVREQEGLKG"
     gene            12048..13493
                     /gene="tldD"
                     /locus_tag="PXA71_001569"
     CDS             12048..13493
                     /gene="tldD"
                     /locus_tag="PXA71_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HDL5105673.1"
                     /translation="MLNQVSNSLLAPSGLELSHLTQVLDHFSGRHIDYADLYFQLSQD
                     ESWSLEDSIIKEGGFYIDRGFGVRAISGEKTGFAYADQITLKQLEQCAAAARSISPTS
                     GQLSVKNFKKTTACSRYPAINPLETISREQKVELLHLVDKTARMADPRVIQVNANLSA
                     VYEEMLVAATDGTLAADIRPLVRLSVSVLVEQNGKRERGSAGAGGRFGLDWFLAPSET
                     GFSRAESLTKEAVRQALVNLTAIPAPAGTMPIVLGAGWPGILLHEAVGHGLEGDFNRK
                     ESSLFSGKIGQMVTSELCTIVDDGTVPNMRGSITVDDEGVPSQRNVLIENGILKGYMQ
                     DKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYLTEGNHEFEEMIESVEYGLYAPHFS
                     GGQVDITSGKFVFSTAEAYLIEKGKITKPVTGATLIGSGIEAMQQVSMVGKKMELDPG
                     IGTCGKEGQSVPVGVGQPTVKLDKITVGGRG"
     gene            13557..14438
                     /gene="prmA"
                     /locus_tag="PXA71_001570"
     CDS             13557..14438
                     /gene="prmA"
                     /locus_tag="PXA71_001570"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDL5105674.1"
                     /translation="MAWVQIRLNSTDKQAEEISDFLTEIGAVSVTFMDSQDTPIFEPL
                     PGETRLWGNTDVVGLFDAETDMNLIVEALKTSKLVDENFAHKIEQIEDKDWEREWMDN
                     FHPMQFGKRLWICPSWREVPDPNAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLEGK
                     TVIDFGCGSGILAIAALKLGAKQAIGIDIDPQAILASQNNAEANGVAEKLQLFLAKDQ
                     PRELQADVVVANILAGPLKELAPNIITLVKPNGNLGLSGILATQAESVCEAYSEAFTL
                     DPVVEKEEWCRITGRKI"
     gene            complement(14613..14688)
                     /locus_tag="PXA71_001571"
     tRNA            complement(14613..14688)
                     /locus_tag="PXA71_001571"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14653..14655),aa:Trp,seq:cca)
     gene            complement(14754..14830)
                     /locus_tag="PXA71_001572"
     tRNA            complement(14754..14830)
                     /locus_tag="PXA71_001572"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14794..14796),aa:Asp,seq:gtc)
     gene            complement(14841..14956)
                     /gene="rrf"
                     /locus_tag="PXA71_001573"
     rRNA            complement(14841..14956)
                     /gene="rrf"
                     /locus_tag="PXA71_001573"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         4435 a         3258 c         3030 g         4295 t
ORIGIN      
        1 tcatttatat taatggagat tcaacacggc tgaacaaatt gttccttcaa atgaagctgt
       61 tttaaaagca gtccacgata ctttagttat ttcaacaact gatttacaag gtgttattac
      121 ttacgctaac gaccttttct gcaaattaac cggttttacc cgtgaagaat taattggaca
      181 accgcataat atcgtacgcc acccagctgt accaaaagaa gtttataaag atatgtggga
      241 tacaatccaa gccggtaaaa tctggacagg tatcgtacca aactgcggta aaggcggtgt
      301 agtttatgtg gttgatacca ccgttcaacc aatgtttgat gaaacaggca aaattacagg
      361 ctatatcagc gttcgccgtg taattaatga tttaatgacc aactttgaag cagtagaatc
      421 agcaaaagaa atctttgatg acttctacgg tgaataatta aaaaacaatg attgcgtgta
      481 aaagatgatc tcttttacac gcaatttttt attttcgagg agtttgtatg tctctcattc
      541 cccatatcca cattgcttat ggttcggagt ctggtaacgc agaaaagctt gcccaacaat
      601 tagctatcca acccttttta cttccctact cacccacact ttctacatta aacgaaaccg
      661 atttaagcca attatctgcc gagagtttat tgcttattgt aaccagctcc tttggtgatg
      721 gcgaaccacc tgaaaacgcc gatgaatttg cagaaaaatt ggaaaatttg accgcttgta
      781 atctgcaata tgcgatattc gggctaggtg atattactta tgataaattc tgtggctata
      841 gcaaacaact agattcatta ttacaacaaa aacaagctaa agctgtgatt gcaagggttg
      901 atgccgattt aaactatcaa gaaattttta aacaatggct acccctagtg gagcaggcat
      961 tacattcaac aaacaaagaa acgatccaac attccctttc tgttcaagct tacggcgagg
     1021 aaatggcata ccaagcagaa gtgttggaaa ttaagcattt ggcaaactca agccctgcgg
     1081 tgtatcacat tcgtttatca ttaaaagaga gcggtatttt ctatcaagca ggggatttaa
     1141 tttatgtcaa agtgcagcaa ccagacagac tattaaatga atatgcagaa tggtttaacg
     1201 atcaaaatgc agttgcatta ctacgccata aagaactccg actactaagt aaaaatgtac
     1261 tgcgtgatat tcaaaaaatt tgcggcagta atgaactcaa agatttaact aaaatttcca
     1321 ataaaaaagc attggaacaa tatgtctatg ggcgggattt attagacgta ttacgcgatt
     1381 ttgacccaaa caaaagcgtg acattagccg atttagagcc aattttatct aacttagccg
     1441 cacgagccta ttcaattagc tcttgcggta aaactcaccc tgattatgtt gatttatgta
     1501 tccgccacgt ttcgtatcat ttaaacggta gagattatca agggactgca agtgggtatt
     1561 tatccgaatt acaagcgggc gattttgtct cgatttttgc aaatgccaat ccgaatttcc
     1621 gtttacccga aacattaacc gctccggtgg tgatgattgg ctcaggtact ggcattgctc
     1681 cgcatatcgc atttttacaa gcgttagagc agcaatatca gggggttgaa agctatttat
     1741 tcttcggcga gcgttatcgt gataaagatt ttctgtatca aacggaactg gaaaattact
     1801 tagcaaaagg caccttaact cagctgttta ctgctttttc acgtgatcag gcagagaagt
     1861 tttatgtgca agatgcccta tcgcaacaag cagagttagt ttggcattta attcagcaag
     1921 gggcttattt ctatatttgt ggtagcaaag caatgagtaa agcaatagat gcggaactca
     1981 tcaaaattgc agatcaaatt ggaggcgatc cttatattga tgatttcaat aatattattg
     2041 caaaattggt cgcagaaggc cgattaatgc gagatgtata ttagcaaatg aaaaaaacta
     2101 aaaacccagc aaaagctggg tttttattta atcatagttc attaagcaac aactgctttc
     2161 tcaactacac gaactaaagt ccaagattta gtttttgaaa taggacgaca ttccttaatt
     2221 tcaacaacat cacctaattt agcttcattg ttttcatcgt gtacatgaag tttagtagta
     2281 cgacggataa acttaccgta taacggatgt ttaactgtac gttcgatagc aacaacaaat
     2341 gatttatcca ttttgtcgct aaccacttta ccttgtactg tacgaatttt atcagtcatt
     2401 attcacccgc cttttcggtt aatacagttt taacttgtgc aatactacga cgcacttgtt
     2461 ttaactggtg ggtttgttga agctgaccgg tggctgcttg catacgcaat ttgaattgtt
     2521 cacctaaaag gttcactaac tcaccattca gctcttcaac acttttatta cgtagttctt
     2581 gagctttcat tacatcaccg tcttagttac aaatgtggtt ttgaacggaa gtttagctgc
     2641 cgctaatgca aacgcattgc gtgcaacttc ttcagaaaca ccatccattt catagagaac
     2701 tttacccggt tggattaagg ctacccagta ctcaacgtta cctttacctt tacccatacg
     2761 gacttctaat ggtttttcag taattggttt gtctgggaac acacggatcc agattttacc
     2821 ttgacgttta accgcacggc tcatcgcacg acgagcagct tcaatttgac gagctgttaa
     2881 acgaccacgg ccaatagctt ttaaaccaaa tgaaccgaag ctcacttctg tgccacccgc
     2941 gataccacgg ttacggcctt tgtgtacttt acggaatttt gtgcgttttg gttgtaacat
     3001 tcagtgattc tccttattta cgacctttgc cacgtggcgc ctttttaggc tgtgccgctg
     3061 gttctttttc agattcaatc actgcagcca ttccaccaag aatttcacct ttgaagatcc
     3121 acacttttac gccgattacg ccgtaagtag tgtgagcttc agcagtacta taatcgatgt
     3181 ctgcacgaag cgtatgtaga ggtacacgac cttcacgata ccattctgag cgagcaattt
     3241 ctgcaccacc taaacgaccg ctaacttcaa ctttgatacc tttagcacct aatttcatcg
     3301 cgttttgaac tgcttttttc attgcacgac ggaacatcac acgacgttca agttgagaag
     3361 cgatgctatc tgcgactaat ttcgcatcta gctctggttt tttcacttca gcgatgttga
     3421 tttgagctgg aacgccagcg attttcgcaa ctgcgttgcg taatttttca acatcttcac
     3481 cttttttacc gataacgata cccgggcgag ctgtgtgaat agttacacga atgctttttg
     3541 caggacgctc aatagtgatg cgtgatacag aagcgttcgc taactctttg tttaaaaatt
     3601 tacgtacttt gaagtcgccg tctaagttat cagcgaaatc ttgtgtattc gcgaaccaag
     3661 tagagttcca aggtttaaca atacctaggc gaataccatt aggatgtact ttctgaccca
     3721 tttgttattc tcctacttaa ttaacgatct gacacaacca cagtgatgtg gcttgtacgt
     3781 tttaaaatac gatctgcacg accttttgca cgtggcatta cacgtttcat gcttggacct
     3841 tcatcaacga agattttagc aactttaaga tcatcgacat ctgcaccgtc attatgctct
     3901 gcgtttgcaa tagctgactc taatactttc ttaacaagcg tcgctgcttt tttgttagtg
     3961 aaagttaaga tttctaatgc tacagaaact tttttaccgc gaattaaatc agcaactaag
     4021 cgagcttttt gggcagaagt acgagcgtaa cgatgtttag caatagtttc catcttttac
     4081 ctcttatttc ttagctttct tatctgcggc gtgaccgcgg tatgtacgag tcggtgcaaa
     4141 ttcacctaat ttatgaccga tcatttcgtc ggaaacataa acaggaacgt gctgacgacc
     4201 attatggact gcgatggtca aaccaatcat tgatggaatg atcattgaac gacgggacca
     4261 agttttaatt ggttttttat ccccgctttc caccgccttc tctaccttct tcaacaagtg
     4321 taggtcaagg aaaggacctt tcttgaggga acgtggcatt ggtgtttacc ttttagttaa
     4381 tgaattaaat tatttgccac gacgacgtac gatgaattta tcagtacgtt tgttgtgacg
     4441 agttttctta cctttggttt gaacgcccca aggtgtaaca ggatgtttac cgaagttacg
     4501 accttcacca ccaccgtgtg ggtgatctac cgggttcatt gcagtaccac gaacagttgg
     4561 acgaatacct ctccaacggt ttgcacctgc tttaccaaga acgcgaagca tatgctctga
     4621 gttacctact tcaccaatgg ttgcagtaca ctcagctaat actttacgca tttcgcctga
     4681 acgaagacgt aaagttacat agttaccttc acgggcaatg atttgaacgt aagcaccagc
     4741 agaacgtgca atttgaccac ctttaccagg ttttaattca acgttgtgta cagttgtacc
     4801 tactgggatg ttacgcattg gtaatgcgtt acctacttta atcggagctg aagcacccgc
     4861 ttgaatttga tcaccagcag ttaaaccttt tggtgctaaa atatagcgac gttcaccatc
     4921 tttataaagt actaatgcga tattcgcaga acgatttgga tcgtattcta aacgctcaac
     4981 aacacccgga atgtctaatt tattacgttt aaaatcaatt aaacggtagt gttgtttgtg
     5041 accgccacca atgtgacgag ttgtgatacg acctaagttg ttacgaccac cagttttaga
     5101 tttagtatct aaaagtgctg caaaaggttt acctttgtga agctcagcgt ttacaacttt
     5161 aacaacgtga cgacgaccag cggaggtcgg cttacattta acgatagcca tttattttat
     5221 ctcctctgat tactctgccg caccttcaac gaagtcaagc gattgacctt cttgaagagt
     5281 tacataagct tttttccagt cactacgacg accaacttta gcaccacggc gtttagtttt
     5341 acctttaact actacggtac gaacagaatc aacttttact tcaaaaagtt cttcaactgc
     5401 atttgcaatc tcaactttgt ttgcatctaa tgcaactttg aatacgattg tattgccttt
     5461 ttctgcgttg tttgtcgctt tttcagagat atgtggtgct ttaagcacgt ttagcaaacg
     5521 ttcttgttga atcatgctaa catctcctca atttgtttta ctgcatctac ggttacaacc
     5581 actttatcga aagcaattaa gctaactggg tcaatacctt gcacatcacg cacatcaact
     5641 ttatataagt tgcgtgctgc taagaataaa ttctcatcta cgtttgcagt aatgataaga
     5701 gcgtcattta acgccatatc ttttaatttt tgtgctaata ctttagtttt tggtgcatcg
     5761 atttcgaatt tctcaacaac cactaaacgg tcttgacgaa ctaattcaga aagaatgctt
     5821 ttgattgcac cacggtacat tcttttgttc actttttggc tgtgatcttg tggtttcgca
     5881 gcaaaagtta cactacccga acgccaaatt ggtgatttaa tatcaccaga acgtgcacgg
     5941 cctgtacctt tttgacgcca aggtttttta cctgaaccag acacttcagc acgagttttt
     6001 tgagcacgag atccttgacg agcacctgct gcataagcaa caactacttg gtggattaat
     6061 gcttcattga actcacgtcc gaaggtagtt tcagaaacag ttagtgcgtt tgcacctaca
     6121 acttgtaatt ccatctctat ctcctagact tatgctttaa ctgccggttt tacgataaca
     6181 tcaccattag ttgcaccagg aacggcacct ttaactaata ataatttacg ctcaacatct
     6241 acacgaacaa cttcaagtga ttgaacggtt acacgctctg cacctaagtg tcctgccatt
     6301 tttttacctt taaacacacg acctggagtt tggttttgac caatagaacc aagtacacga
     6361 tgtgataaag agttaccgtg agttgcatct tgagtacgga agttccaacg tttaacacca
     6421 ccttggaagc ctttaccttt tgatgtacca gtaacatcga cttttttaac atcagtaaag
     6481 atgtcaacat tgatttcttg acctaaagtg aattcttcac cttcagtagt acgaaattcc
     6541 cataaaccgc gtccagcttc aacacctgct ttcacgaaat gacctgcttc tggtttagtt
     6601 acacggctag cttttttaga gccagtagta acttgaattg cagagtagcc atcgttttca
     6661 agggttttaa cttgagtaac acggttggct tcgatttcga taacggtaac tggaatagac
     6721 acgccgtctt cagtgaaaac gcgggtcata ccaactttac gaccgattaa accaatcatt
     6781 gtaataacct cttaaaattc ccaattaacc tagactaatc tgaacgtcaa cgccagcagc
     6841 tagatctaaa cgcattaatg catcaacagt tttttctgtt ggttcaacaa tatcaactaa
     6901 acgtttgtga gtacggattt catattggtc acgtgcatct ttattcacgt gtggagaaat
     6961 caatacagtg aaacgttctt tacgagttgg taaaggaatt ggaccacgaa cttgtgcacc
     7021 agtacgttta gctgtttcta cgatctccgc agtagattga tcaattaaac gatgatcaaa
     7081 tgcttttaag cggatacgga ttctttggtt ctgcattaga ccagagctcc aattaaaaaa
     7141 tttagctaat aaaaaaacca aactaccact taacaaatta gttaagggag ctcagttaaa
     7201 cctatatagt tccaaaatta ggaacattgt atacactaca atatctgtag tgccatttga
     7261 taaatgatta catcaaatgt ctttagatac ctaaagcttt gctatcatac tcgtttcatt
     7321 tcccttatgc aagtaatttt tgttttttat attgacaata atttgattcg ataaaacttc
     7381 taaagataca caatatttcc aatacttcat ttgaagtggc tcaaataaat tgtatttatg
     7441 cattttttta ttcaaacttt tcgagccact tcacaaatct aaaaaatcct agttgaaatt
     7501 taatccataa gagtatttat tattaaataa gtttcatgac cttacatcgg agtacatata
     7561 tgcaaacaat caatgaaatt aaagaagaaa tctaccctat atttgagcct atcattggaa
     7621 caattcggct aaaaacctac ttttcctact acgcagtttt taaggatgga ttgatgattg
     7681 cattgtatca aaatggagca acttatttac gtattgcgaa aaaagatatt gaatacattc
     7741 gtcagtatcc taaaacctgt atcttatgcg atgaaaaaat tggtatacaa agtagaaaat
     7801 ttcattatat tccgcaagtt ctcatagatg atacaccaaa atttagctcg ctactctttg
     7861 gaattataga ggaactccga acggagaagt acaaaataag ccaaaagcga gctacacaaa
     7921 tccgaaacct accaaatatg aatttaaagt tagaaagaat gttgaaaaaa atagggattc
     7981 attccattca tgattttact caagaagggt atatgtcaac ttttatcaaa ctgattctcc
     8041 accgaagact tactgtttaa gctaaacgga gctttaaatc accaatatat ttacaccttc
     8101 acagatcaac aaaaaaggga actaatgcaa gaagcaaatc aagcgctata taattcaggc
     8161 ctaagaaaaa gatttaacgc cctgtagtta aataatgtga tccaaatcat aaaatataaa
     8221 aaaaccaata aggaattgca attcgcagtt cctttctttt tcttttatat gctagtatca
     8281 ccttatacct ctaaattatt agtgcctact gattttcaat taatccaaca atttaggaga
     8341 gcgcatcatg gaattccgta tcgaaaaaga cacaatgggc gaagtgcaag ttcctgccga
     8401 taaatactgg gcggcgcaaa ccgagcgttc acgcaataac ttcaaaatcg ggccggaggc
     8461 atcaatgccg gcggaaatta tcgaggcgtt tggctatctg aaaaaagcgg ctgcctatgc
     8521 taatcacgat ttaggcgtac tagcggtcga aaaacgggat ttaattgcaa aagcctgtga
     8581 tgaaattttg gcgaacaaac tcgatgatca attcccgctg gtgatttggc aaaccggctc
     8641 gggtacgcag tcaaatatga acgtgaatga agtcgtggca aaccgtgcac acgtgttaaa
     8701 cggcggcaag ctgggtgaaa aatcgattat tcacccgaat gatgatgtga ataaatccca
     8761 atcttctaac gacacctacc caactgcaat gcacatcgct gcttacaaaa aagtggtgga
     8821 acacacccta ccttgtgtga aacgtctgca aaaaacctta gcggaaaaag ccgaagcctt
     8881 taaagatgtg gtcaaaatag ggcgtactca cttaatggat gctaccccgc tcacgctcgg
     8941 tcaagagttc tctgcctatg cagcacagtt agcattcggc atcaaagcat tggaaaacac
     9001 cctgccacac ctgcgtgagc tggcactcgg cggcacagca gtcggcaccg gcttgaatac
     9061 cccgcaaggt tacgatgtga aagtggcgga atacattgcg aaattcaccg gtttaccgtt
     9121 cgttaccgcc caaaacaaat ttgaggcatt agcgactcac gatgcgattg tcgaaaccca
     9181 cggtgcatta aaacagcttg cggtgtcgct ctacaaaatt gccaacgatg tccgtttatt
     9241 agcctccggt cctcgttcag gcattggcga aattctgatt ccggaaaacg agccgggttc
     9301 atcaattatg ccgggtaaag taaacccaac ccaatgcgaa gcaatgacaa tggtatgtgc
     9361 ccaagtatta ggcaacgatg taaccatctc ttttgccggc acgcaagggc atttccaact
     9421 gaatgtctat aaaccggtga tggcgtacaa cttcctgcaa tcggctcaac tgctaggcga
     9481 tgcgtgcgtg tcgtttgacg aacactgtgc agtcggcatt gaaccgaact accctcgcat
     9541 taaacaacag ctcgaccaat cgctgatgtt agtgaccgca ttaaatactc acattggtta
     9601 tgaaaatgca gcgaaaatcg ccaaaactgc ccacaaaaac ggcacaacac tgaaagaaga
     9661 ggcgattaac ttaggcttag tcacggcaga acagttcgat gaatgggttc gtccggaaga
     9721 tatggttggc agcttgaaat aagcccaacc cttctcttgt aatctgattt acacctcaat
     9781 ctaccggtaa gattgaggtg taatttttta tagcgagggt actgattttg ttttagaatg
     9841 aagcatcatt ttttaagcgg aaaaacctat gaaaaaactc attttaatcg cattagttac
     9901 tactttaggc ttaagtgctt gtggggtcaa aggcccactc tacttccctg agcaagcccc
     9961 taaacatgaa caaaaataag cattgcaagc ggtctgtttt ggctaaaatt ttgcaaattt
    10021 ttgtgaaaaa atgaccgctt gttgcctctt ttctttcaaa atcccaaaca caacggactt
    10081 tcaatgaacc attttgaata taaaaacaac caactttttg ctgaagaagt cgctattgcc
    10141 gatattatcg agcaatacgg cacgccagct tatgtttact ccagatctac ccttgaacgc
    10201 cactggcacg cattcaataa tgcgtttggc tcgcacccac atttagtttg ctttgcagtc
    10261 aaatccaact ctaacattgc cttgttaaat gtaatggctc gtctcggttc aggctttgat
    10321 attgtctctc aaggcgagtt ggagcgtgtc ttagctgccg gcggcgaagc ctctaaagtt
    10381 gtcttttccg gtgtggcaaa atcgcacagc gaaatcaaac gagcattgga agtcgggatt
    10441 cgttgcttta acattgaatc ggtttccgaa cttcaccgca ttaaccaagt tgccggtgaa
    10501 ctaggcaaaa tcgcaccgat ttcactgcgg gtaaacccgg atgtggacgc ccacactcac
    10561 ccatacattt ccaccggttt aaaagaaaac aaattcggcg tgagcgttac tcaagcccgt
    10621 gaagtgtatc gcttagccaa aaccttaccg aatgtgaaaa ttaccggtat ggattgtcac
    10681 atcggttcgc aattaaccga attgcaacct tttttagatg caacggatcg cttaatcatc
    10741 ttaatggagc aactgcgtga agacggcatt gagctacacc acttagactt aggtggcggt
    10801 ttaggcgtgc cttacaacgg cgaagagcct ccgcatccga ccgaatatgc caaagccttg
    10861 ctggaaaagc tcaaaggcta tgaaaactta gaaatcatta ttgaaccggg gcgtgccatt
    10921 accgcaaatg ccggtatttt agtgacgaag gtggaatact tgaaacaaaa tgaagatcgt
    10981 aattttgcga ttgtcgatac cggtatgaac gatatgattc gcccggctct gtatgaagcc
    11041 tatatgcaaa ttacggaagt ggataaaacc ttaaaccgtg acaaagctgt ttacgatgtg
    11101 gtcggtccga tttgcgaaac ctcggatttc ttaggcaaac aaagagaatt ggcaatttct
    11161 gaaggggatt taatcgctat tcgttctgcc ggtgcttatg gggcggcgat gtcttcaacc
    11221 tacaactctc gcccacaagc ggcagaaatt atggttgatg gcaaccaagc ccatttaatt
    11281 aaagcccgag ccacttttgc tgatttatgg cgtttagaaa aattattacc ttaatgagga
    11341 agaaaagatg aaattatatg gattaaccgg tgcttgttca tttgtaccac acgttgccct
    11401 agagtgggtg aaattgcgtg ccaatcaaga ttatgcgttt caagctgtta gccgtgaatt
    11461 tattaaatcg gcggaatatc tggctttaaa ccctcgtggt aacgtaccat tgttggttga
    11521 tggcgacttg gccctcacgc aaaaccaagc tatcgtccac tatttagacg agctttatcc
    11581 ggaagctaaa ttattcggca gcaaaaccgc tcgtgataaa gccaaagcgg ctcgttggtt
    11641 agcttttttc aattcagatg tgcataaatc attcgtgcca ctgttccgct tgccaagtta
    11701 tgcggaaggc aatgaaacgc tcaccaaaac tattcgccaa caatcggctg agcaaatttt
    11761 agaacaactg gcttttgcga atgctcattt agaaaatcat attttctttg gcgaagaaat
    11821 ttcggttgcc gatgcgtatc tctacattat gctcaactgg tgtcgcctac tagggttgga
    11881 tttctctcat ctttcccaac tttctgcctt tatgcaacga gtggaggcag accaaggcgt
    11941 agataatgtg cgtgagcaag aaggcttaaa aggttaattc accattgttc atttaagacg
    12001 gtagatttta tgttaaaatc taccgtcttt tatttttagg aatcaccatg ctaaatcagg
    12061 tttcaaacag cttgcttgct ccaagtgggc ttgaattatc gcacttaact caagtgttag
    12121 atcacttctc cggccgtcat attgattatg ccgatctcta cttccaactc agccaagacg
    12181 aaagctggag cttggaagac agcatcatca aagaaggcgg tttttatatc gaccgagggt
    12241 tcggtgtgcg agccatatca ggcgaaaaaa ccggctttgc ctacgccgat caaatcacgt
    12301 taaaacagct tgagcaatgt gccgctgccg cacgttcaat cagcccaaca agcggtcaat
    12361 tatcggtaaa aaatttcaaa aaaacgaccg cttgttctcg ctacccggca atcaacccgc
    12421 tagagaccat cagccgtgaa caaaaggtcg aattgctcca tttggtggat aaaaccgctc
    12481 gaatggcaga tccgagagtg attcaagtga atgcgaatct ctcagcggta tatgaagaaa
    12541 tgttagtggc agcgactgac ggcacactgg ctgcggatat tcgcccgtta gtgcgtttat
    12601 ctgtgtcggt actggtggaa caaaatggca agcgtgaacg aggttcagca ggtgccggtg
    12661 gtcgctttgg tttagattgg ttcttagcac caagcgaaac cggctttagc cgtgcggaat
    12721 cgcttaccaa agaagccgtt cgccaagccc tcgttaatct cacagccatt cctgcaccgg
    12781 caggcacgat gccgattgtt ctcggtgctg gctggccggg cattttgctc cacgaagcag
    12841 tcggacacgg cttggagggt gattttaacc gtaaggaatc ttcgctcttc agtggtaaaa
    12901 tcgggcaaat ggtcacctct gagctttgca ccattgttga tgacggtacg gtgccgaata
    12961 tgcgaggctc aatcacggta gatgacgaag gcgtgccttc gcaacgtaat gtgttaattg
    13021 aaaacggcat tctaaaaggc tatatgcaag acaaactcaa tgcccgcctg atgggagttg
    13081 ccccaaccgg caacggcaga cgggaatctt acgctcattt gccgatgcca cgaatgacca
    13141 acacctacct caccgaaggc aatcacgaat ttgaagagat gattgaatcg gtcgaatacg
    13201 gtttatatgc tcctcacttc agtggtggac aagtggatat tacctccggc aaatttgtgt
    13261 tctccaccgc cgaagcctac ttaatcgaaa aaggcaaaat caccaaacct gttaccggtg
    13321 caaccctgat cggcagcggc atagaagcaa tgcaacaagt ttcaatggtc ggcaaaaaaa
    13381 tggaactcga ccccggcatc ggcacttgtg gcaaagaagg gcaatccgta ccagtcggcg
    13441 tagggcagcc tacagtgaag ttggataaaa ttacggtggg gggaagaggg taatctctcc
    13501 ccgtttgcaa aatataaaga aaatatcacc gcttgtagcg ataaaaggaa aacaaaatgg
    13561 cttgggtaca aattcgttta aacagtacag ataaacaggc tgaggaaatc agcgattttt
    13621 taaccgagat tggagcggtg tcagtgactt ttatggatag tcaagatacc ccaatttttg
    13681 aacctcttcc gggggaaacc cgtctttggg gaaataccga tgtggttggg cttttcgatg
    13741 cggaaactga tatgaatctt atcgtagaag cactaaaaac cagcaaattg gtggacgaaa
    13801 actttgctca caaaatcgag caaatcgaag acaaagactg ggaacgggag tggatggata
    13861 atttccaccc aatgcagttt ggcaaacggt tatggatctg cccaagctgg cgtgaagtac
    13921 cagacccgaa tgcagtgaat gttatgttag accctggttt agcatttggc accggcacac
    13981 acccaacgac ctcgctttgc ttacaatggt tagatagctt agatttagaa ggcaaaacgg
    14041 ttatcgactt cggctgtggc tccggtattt tagctatcgc tgcacttaaa ctcggtgcaa
    14101 aacaagccat cgggattgat atcgacccac aggcgatttt agctagtcaa aacaatgctg
    14161 aggcgaacgg cgtagcagaa aaactacaac tattcttagc caaagatcag ccaagagagt
    14221 tacaagccga tgtcgttgtt gcgaatattc tagccggccc actcaaagag ttagcaccga
    14281 atatcatcac gctggttaaa ccaaacggca atttaggctt atccggcatt cttgctactc
    14341 aggctgaaag tgtgtgtgag gcttatagcg aagcctttac gctagaccct gttgtagaaa
    14401 aagaagaatg gtgtcgtatt acaggccgca aaatctaata taagaagccc tgttttaaac
    14461 agggcttact ttttgataaa ttctactact ctttacctgt cttgggaatc gttctcccta
    14521 aattaattaa cacaagcggt agaaataaca ggaaaattta caaattacat aaatgaaaaa
    14581 agccgactga aatcagtcgg ctttctaaat aatggcaggg gcggagaggc tcgaactccc
    14641 aacacccggt tttggagacc ggtgctctac caattgaact acgcccctat tgataggtat
    14701 tcattttgca cttatagggg cgaattacta ttcgcccctg cattaaagat tattggcgga
    14761 acggacggga ctcgaacccg cgaccccctg cgtgacaggc aggtattcta accagctgaa
    14821 ctaccgctcc taaattaata gattgataat gccctactct cacatggcga atcaccacac
    14881 taccatcggc gttactgcgt tttacttctg agttcggtat ggagtcaggt agagccacag
    14941 cactctggtt atcaatcaaa ttctttcatt tagtcagttt actaaaatat agtttatact
    15001 ttctaataaa ctcactaa
//
LOCUS       DANLRW010000062        14937 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.062, whole genome shotgun sequence.
ACCESSION   DANLRW010000062 DANLRW010000000
VERSION     DANLRW010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14937)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14937)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14937
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.062"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            264..458
                     /locus_tag="PXA71_001574"
     CDS             264..458
                     /locus_tag="PXA71_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105675.1"
                     /translation="MTKFFETIAFVMLFGIIPSCLLAINTTLMNMNIKNAPWFMVIIQ
                     LGFNITCYWLWFISVMRNVI"
     gene            586..1155
                     /locus_tag="PXA71_001575"
     CDS             586..1155
                     /locus_tag="PXA71_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein NinG"
                     /protein_id="HDL5105676.1"
                     /translation="MANKPPKQHKCKECGSYYIKFQSTQQVCSVKCAMAMGKRKTEAK
                     RKKSAKIDRLEQRKRLEKLKSRRDFEKDLQKIFNKFIRLRDKDLPCISCGRYHQGKYD
                     AGHYKTVGGNPELRFNEDNCHSQCVPCNRHLHGNIVNYRVNLIEKIGLERVEFLERKD
                     HPPLKLTIEQIKDLIKVYKAKCKELERVT"
     gene            1145..1618
                     /locus_tag="PXA71_001576"
     CDS             1145..1618
                     /locus_tag="PXA71_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105677.1"
                     /translation="MLPRKIKNKWLEPEKQKWIEELLRLWGAWEFGGLDLESRVNMIY
                     RLMKSAEGVKSLSSREVCNDSLGTLINEIFTVVTKRDVMLADILKQKYWFGRSERQIA
                     IYYQLRDSEGRKERRWQEIIQDKCKKAERIIADILESKISSSNSTDKLKKYQFSP"
     gene            1846..1921
                     /locus_tag="PXA71_001577"
     tRNA            1846..1921
                     /locus_tag="PXA71_001577"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1879..1881,aa:Trp,seq:cca)
     gene            1938..2123
                     /locus_tag="PXA71_001578"
     CDS             1938..2123
                     /locus_tag="PXA71_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105678.1"
                     /translation="MYNLDDAIQECREKFGEDKPYFSEAGTLTFAGCKALSRLRDEKL
                     GIKAPPNFPFPRVEDLS"
     gene            2149..2319
                     /locus_tag="PXA71_001579"
     CDS             2149..2319
                     /locus_tag="PXA71_001579"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105679.1"
                     /translation="MTEQLNTQSKSGEEDQEKSQDRYAVGWPSRRISDCVQHFRSRKI
                     YPFASNNDVKQG"
     gene            2462..2707
                     /locus_tag="PXA71_001580"
     CDS             2462..2707
                     /locus_tag="PXA71_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105680.1"
                     /translation="MKLMKDMGTQSYIWSGFSTWLAWLGEQQNLMLLSLAIGIVTAIA
                     GLIQRFDEWRRRKREDERAEELHQAKMARLRKGLSDE"
     gene            2700..3269
                     /locus_tag="PXA71_001581"
     CDS             2700..3269
                     /locus_tag="PXA71_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HDL5105681.1"
                     /translation="MSKSLKYGSGIVCGIAAIITLVQYQHPEIRTNQAGLEIIGNAEG
                     CRRDPYKCPADVITVGIGSTEFGGEKIDPNRIYSDKEIAERWAKDLKIAESCVNRHFN
                     GKDMNDNQFSGMTSAVFNMGCYNMRFYRNKQGQYVQTTIHKLAVNKQFEEMCHRLPDF
                     IRASGKVLNGLVIRREKEKALCLTGLVAR"
     gene            3242..3592
                     /locus_tag="PXA71_001582"
     CDS             3242..3592
                     /locus_tag="PXA71_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HDL5105682.1"
                     /translation="MLNWISGTIAIVILGLCVWLWGQSQMIDSLRAENRAQAQTIEQQ
                     QKANQRLTDSLEQERQAVEKIQKIANELRNKVEMAKNEITSILAQDSCAKADLPNGVA
                     DSIKRLHQQNNHKH"
     gene            3597..3770
                     /locus_tag="PXA71_001583"
     CDS             3597..3770
                     /locus_tag="PXA71_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105683.1"
                     /translation="MYPPAAYLVPCGRTEFSGRTYGDTVEYLVKVMGERDLCANQIDR
                     IREWQAQTKQGFK"
     gene            4162..4686
                     /locus_tag="PXA71_001584"
     CDS             4162..4686
                     /locus_tag="PXA71_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDL5105684.1"
                     /translation="MTKKGEVKATSKGVGKLTDKQKRFVEEYLIDLNATQAAIRAGYS
                     EKTAYSIGEENLRKPEIRSAIQEAQNKRSERTQITQDDVLNGLLEVIAMSTGKKIVTE
                     TDVAKNDNGELVGFDIAKTKFEPAAANKALELLGKHLGMFKDKVDLINSDGSLNRPMV
                     IELIAPSLDDESTD"
     gene            4670..5890
                     /locus_tag="PXA71_001585"
     CDS             4670..5890
                     /locus_tag="PXA71_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HDL5105685.1"
                     /translation="MKAQIELPPKLLPVFAKDYRYKGAYGGRGSGKTRAFAKMSAVSA
                     YKRAMRGESGVILCGREFMNSLEESSLEEVKQAIKSEPFLANFFDVGEKYVRTKDGRI
                     SYVFSGLRHNLDSIKSKARILIAWIDEAETVSETAWRKLIPTVRENNSEIWVTWNPEN
                     RGSATDTRFRQNPPENSCIIEMSYQDNPWFPDVLEQERLNDKQRLDDATYRWIWEGAY
                     LEASEAQIFRGKYQEMEFVPNPDFDGPYYGLDFGFAQDPTAAVKCWVFNGDLYIEFEA
                     GKVGLELDDTADFIAKGVPQIADHVVRADSARPESISYLKRHGLPRIIGVEKWKGSVE
                     DGIEHIKSYGKVFIHPRCQQTLNEFRLYSYKTDRLSGDVLPVVIDAHNHFIDALRYAL
                     TPLMQVKSAKGVLL"
     gene            5887..7263
                     /locus_tag="PXA71_001586"
     CDS             5887..7263
                     /locus_tag="PXA71_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HDL5105686.1"
                     /translation="MSLEQDRLAFLAEALGLGNIKRRTLWKEFGYPNTLTFNHFLKAY
                     KRNSIAFAAINRLLDGCWVDCPVIVEGEQKNESKQTTEWESKVERFMKRYWSAIKEAD
                     RRNLVGNYSALLLQVRDGQQWDQPILQGALSSIGEFGLVKLIPVWQSQLSVTEFQEDV
                     TADNYGEPLMYQFSESAFGKKSVSRNIKVHASRVILLNEGGDFNSPHSGVPLLEAGYN
                     KLVDLEKTSGGSAEGFLKNASRQLGIKLTKDVDLRQLEDSAKALGFSSFSDALNDKIK
                     KINSGTDSALITHEGDASVLSVAPADPKPTWEISANEFAASVQIPFTILFGQQTGRLA
                     SDEDKTDWANRCNGRRNGFLTDVITQLLNRLWFIGVLPMPKNSDVTVSWSDLLAPSEK
                     EKIANAQALASVATTSQSAFGFAAVTANEIRESLGFEPLPDNLIPPTIDDENEDQDEN
                     QATADSDK"
     gene            7217..8155
                     /locus_tag="PXA71_001587"
     CDS             7217..8155
                     /locus_tag="PXA71_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017357793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head morphogenesis protein"
                     /protein_id="HDL5105687.1"
                     /translation="MKIKTKIKPLRIPTNKADPLNMGVSVAKLFRHIDVIYSQIKRSI
                     KQQILQKMSLRLQANNFEYFPSYLTATELADLLETLQKIIDKEILSNGSQGENLWFDS
                     YIDEAALKGTQSAVTDLGLQSEAYRSQRNLSSIVFSPAYFNRLAIAHMASYSEWQGLS
                     DELRKSLAGVITEAVLNGKNVKETAREIRQKLDVSSKRAKRIAQSSQLAAYRRAEWQE
                     AEEAKEELGLNTKLLHFSALKATTRLAHAQRHGKYFDVAEVREWYSRDGNQFNCYCKQ
                     SVVVVNADGKTDIEPLLVGLAKERKQWVGALKNVKK"
     gene            8142..9512
                     /locus_tag="PXA71_001588"
     CDS             8142..9512
                     /locus_tag="PXA71_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HDL5105688.1"
                     /translation="MSKNNVNIVTVINSKNISTESIDGDQHLIIRGVVPIVDDVVMND
                     GLYPADEINKSYNSLEGNFMPLGHPKIEGKYVSAQDVRAVNKHHVGAWAKNVRKESGK
                     VLVDMYINRRFAEGSEQGKTLLERLDGMVTNTNAEPIHVSTGLILNKVKQSGKSKGKK
                     YSWIATNMSFDHIAILLDVPGAATPDDGVGIFVNQDGSEMGVENVNLTQAADYRTEKL
                     FDKVRFYLMANSDLSFEEIHRALREAIRPEGKDKWSFWVEAVYPKYFIYSDDNSGKKY
                     KRSYFIDENDNVQLTSEPVEVVKKIGYEEITTNEEHNPMKTKILAVLNAANVKTEGLN
                     DDQLLEAYNKLQADKGKEPEKPKNEDDSEIDEKIKKAVNAAIEPLQQALQANTDKEQA
                     AMRAAVKAKFNMSDAAVNALQGEVLTELYAQTQQSVGLNNNSANGNGDNQWDGYSLNQ
                     EEKGNE"
     gene            9505..9939
                     /locus_tag="PXA71_001589"
     CDS             9505..9939
                     /locus_tag="PXA71_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105689.1"
                     /translation="MSNVIYRGSVKREPQTVNIVINDTSAPGAVVKLHNGKLEAAADL
                     KGRRFLLGNNRFKGQTIEQAYAKGDTATAFRLEPEQEYYAQIADGTYNFGDELTVKQA
                     GGKLTKAETGDVVLFFFDEESQRVISGGKGYADVVVANAYTK"
     gene            9954..10943
                     /locus_tag="PXA71_001590"
     CDS             9954..10943
                     /locus_tag="PXA71_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="encapsulin"
                     /protein_id="HDL5105690.1"
                     /translation="MLKFTKEQERFVINERINYDKKHALMAANSAGLLGNAMTLPKDV
                     WAEWDRDAVQIQREELVVFNDLAGISKSMPIGKLIHHFQTVSDSGSVNISLDGRSSAK
                     TDNVVLNYHGTPLPIIDSTFSFGWRDMSAAQSEGYQIDGAARANSLRKVAEKMEDLAL
                     NGDSSIVVGNAKLYGLRTAPNRMTNTHNLDLATATPKEIYDVFRDLISKFHAKNYYSP
                     VTLYVNYGDYFAMSTRDYSEQKSEGSILNKVMTIPQIAKIVPASRVPQNEILGLCKRS
                     DVYQVLNGMPLVTRPIARHNETDDYSFQIMAAVAVEFKFDDKGNAGYIQYTKS"
     gene            10955..11188
                     /locus_tag="PXA71_001591"
     CDS             10955..11188
                     /locus_tag="PXA71_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105691.1"
                     /translation="MKWLLTHDSHELKKGDVYEGETLPLWLVGKAIEIEEKSFEVATP
                     SDHADGETGETGETGETGETGETGQKGKKDKGK"
     gene            11191..11568
                     /locus_tag="PXA71_001592"
     CDS             11191..11568
                     /locus_tag="PXA71_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105692.1"
                     /translation="MAAEIELSEARTTLDELGFTSPNSLLELYVQQTNTLDQALNKSG
                     YSEETQKLIKLYLVAILAISSGARRIKSEGAPSGASRTFEYDPNALDNLKSAIRSIDP
                     KGCAESLLPKDKVVGFFDVVGGC"
     gene            11568..11912
                     /locus_tag="PXA71_001593"
     CDS             11568..11912
                     /locus_tag="PXA71_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105693.1"
                     /translation="MSNLSNWSYTAKATLWQAKGKNDDGVLVFSTPQIISCDYGADRK
                     RARFEIGREQAVKNVIWTEFAHAKLGDYVLIGESEQADPILAGAEEIIHIQRFADTFD
                     RNRDDFALITGG"
     gene            11914..12282
                     /locus_tag="PXA71_001594"
     CDS             11914..12282
                     /locus_tag="PXA71_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDL5105694.1"
                     /translation="MGIKVKGIRQVKQRLNQVVGEVQSQKATRAMFRILNAVAPLAAH
                     YTPVDTSTLINSQFTEMEVNGTRLIGRVGYSANYAAYVHDPNIKQNFRKPSAKKEFLT
                     SALNESKATIKSIVKEELSL"
     gene            12279..12659
                     /locus_tag="PXA71_001595"
     CDS             12279..12659
                     /locus_tag="PXA71_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105695.1"
                     /translation="MISYVKAFKQWLEAHSLADGYVVQLYQWEDTQKAKPVIVIQPNS
                     GSPQVSDLSSEHYLLISLVAGKNSGYTIEERARAIMSKILVEPFASFGYIESMGGLPA
                     PIFTEDNRMIFRLPLRIISTNQEE"
     gene            12663..13145
                     /locus_tag="PXA71_001596"
     CDS             12663..13145
                     /locus_tag="PXA71_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5105696.1"
                     /translation="MGSPSPQNNAENLVVGRAVVLEYGTTDAKPQESEWKVAGAMTTK
                     SWDFSPNSVTSEADDAGGFPETLITNSDFSISGDGEWRKRPKSKELGIKDLVVLYANA
                     VKNRTQPYIWVRLKYAGLTILGKMVITALSSEAPTNDLVKFSIEFKVGDSSTIEIAAA
                     "
     gene            complement(13185..13601)
                     /locus_tag="PXA71_001597"
     CDS             complement(13185..13601)
                     /locus_tag="PXA71_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5105697.1"
                     /translation="MFYPALFTPAEEGGFVVTFPDLPEAITQGDTFEEAMEMAEDVLL
                     SCVEIYFDEDRRFPLTRPVNTDEVPVFMPESIYAKVLLHNTMQEQAVSKAEIARLTNI
                     RPPEVQRILAPRHITKIDTIGRILASLGKPLQLSLG"
     gene            complement(13657..13833)
                     /locus_tag="PXA71_001598"
     CDS             complement(13657..13833)
                     /locus_tag="PXA71_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010848235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5105698.1"
                     /translation="MKQSEFLRWLKANGVEVENGSKHLKLYYKGKRSHLPKHPSQELK
                     TGLVEGVKKQLGLK"
     gene            13929..14600
                     /locus_tag="PXA71_001599"
     CDS             13929..14600
                     /locus_tag="PXA71_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105699.1"
                     /translation="MKMVSYPITEIGEMLIATDGRDFLFRPSFKNIYKIGSPQEIVKI
                     YALLHGCEIREILPHILTKSESHQSYFWSVLNSPVFGRKILQNAMIVMSCCCDDDISL
                     LIGEWLPSKSGVRYKLGKMPPETIINFAKNLMGHGVIGCCELPKKEQSAKNEFSESFD
                     AVEYISLARTHFNMSREDAENLTMTELQQLLKSQMPAENNSYGQFTEEEYDRIMAEYE
                     KRRAA"
     gene            complement(14615..14848)
                     /locus_tag="PXA71_001600"
     CDS             complement(14615..14848)
                     /locus_tag="PXA71_001600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105700.1"
                     /translation="MKKDCTKQDFANWLNENQEVCWIKEVSIERILSCVDDYVAICNA
                     RSKDEFELLNDIRELFYSAHYKDFTPVLSGRFF"
BASE COUNT         4527 a         2891 c         3574 g         3945 t
ORIGIN      
        1 ttaaaatgaa aaagaatgtt attagatatt ggcttagcgt gccattcaga attattgcag
       61 tgcttttttt cttagtcatt cttactgtta gatatgtagg ttatttattg atttatccat
      121 tagcattctt tgcagcagtc ggtagtttta ttgttttctg tcaatggaca tatcaagaat
      181 ggctttatta ttttaagcgc ggttttgctc cgatttagtg tgtgtttatt aattccctcg
      241 aattcggggg aaggagaagt aagatgacaa aattttttga aactatcgca ttcgtgatgt
      301 tatttggcat tattccaagc tgtttgttgg cgattaatac tactttaatg aatatgaata
      361 ttaaaaacgc accgtggttt atggtgatta ttcagttagg ttttaatatc acttgttatt
      421 ggttgtggtt tatttctgtt atgcggaatg ttatttaagg agattaataa gtgagccagt
      481 gcaatgaact gactgtaatt ttaatcgcca tcgctattct tagtgtatgt gccggttcac
      541 tcttttttat tgagtggttt gataagagag atggtgaggg ttggaatggc taacaaacca
      601 cctaaacaac acaaatgcaa agagtgcggc agttattaca tcaaatttca aagcacgcag
      661 caggtctgct ctgttaagtg tgctatggca atgggtaagc gtaagacaga ggcgaaacgc
      721 aaaaaaagtg caaaaatcga ccgcttggag caacggaagc ggctggaaaa attgaaaagc
      781 cgtagagatt ttgagaaaga tttacaaaag atatttaata aattcattcg cttgcgtgat
      841 aaagatttac cctgtatttc ctgtggccgc tatcatcagg ggaaatatga tgcagggcat
      901 tataaaaccg ttggtggtaa tcctgagcta cgttttaatg aagataattg ccacagtcaa
      961 tgtgtgccgt gtaaccgaca tctgcacggc aatattgtga attatcgagt aaatctgatt
     1021 gagaaaatcg ggcttgagcg tgtggaattt ttagagcgta aagaccaccc accattaaaa
     1081 cttactatcg aacaaatcaa agatttaatc aaagtctata aagcgaagtg caaggagctt
     1141 gagcgtgtta cctagaaaaa ttaaaaacaa gtggttagag cctgaaaagc agaaatggat
     1201 cgaagagttg ctaaggttat ggggggcgtg ggaatttggc ggattggatt tagaaagtcg
     1261 ggtaaatatg atttaccggc tgatgaaatc tgcggagggg gttaaaagtc tttcatctag
     1321 agaggtttgt aacgatagcc tcggcacgct gatcaatgag atttttacgg tagtcaccaa
     1381 aagagacgta atgttagccg atatactcaa acaaaaatac tggttcgggc gttcggagcg
     1441 gcaaatcgct atttattatc aactaaggga cagcgagggt agaaaagaaa gacgatggca
     1501 agaaattatt caagataaat gcaaaaaagc ggaaagaatt attgcagata ttcttgaaag
     1561 caagatttca tccagtaatt ctacagataa actgaaaaaa tatcaatttt ccccttgatt
     1621 ttagtgcgta acaagtgtat attttgtgct aatggtggac gtagtataaa tgatgtttac
     1681 caatgttagt taaagacgca gcctgaagta atattcagtt cggaggagaa taactagaaa
     1741 cgacgtcgag tatagttatt tcagcgtttg cgtggcagta tgccgaccga attagtttaa
     1801 cagccctgag cagaaatgct tggggctttt ttgtttacgg attttaaggg tgtagctcag
     1861 ttggtagagc agcggtctcc aaaatcgttg gttgttggtt tgagtccaac caccctttcc
     1921 aaatgcgagt aaatgttatg tataaccttg atgatgcaat tcaagaatgc agagaaaaat
     1981 ttggtgaaga taagccttat ttttctgaag ctggaacact tacttttgct ggttgcaaag
     2041 ccctctctcg attaagagat gaaaagttag gaattaaggc tccgccaaat ttccctttcc
     2101 caagggttga agatctatct tagctacaaa aatcaatgag ggattgctat gacggaacaa
     2161 ctaaatactc agtcaaaaag cggtgaagaa gatcaagaaa aatctcaaga tcgctatgcc
     2221 gtgggctggc catctcgacg tatatcagat tgcgttcagc acttccgaag taggaaaatt
     2281 tatccatttg ccagtaataa tgacgtgaag caaggttaaa tgcttctggt ggtacagagt
     2341 aaattcaatc atttttaccc tctgctagtt tatttgttgg ggaacagtat tctagcagaa
     2401 tttttaacca aagctcagtc tcacgactgg gcttttttat tgcctcgaaa cggggtggag
     2461 tatgaagtta atgaaagata tgggaacgca gagctatatt tggtcgggat ttagcacttg
     2521 gctggcgtgg ctcggcgaac agcagaattt aatgttactt agtcttgcta tcggtattgt
     2581 tactgccatt gcagggctta ttcagcgatt tgatgaatgg cgtaggcgta agcgtgaaga
     2641 tgagcgagcg gaagagcttc atcaagcgaa aatggcaaga ttgagaaagg ggttaagtga
     2701 tgagtaaaag ccttaaatat ggcagtggta tcgtttgtgg tatcgctgcc attattacat
     2761 tagtccaata tcaacatccc gaaatccgca ctaaccaagc tggattagag attatcggta
     2821 atgctgaggg ttgcagacgt gatccgtata aatgccctgc cgatgtaatc acggttggca
     2881 ttggctcaac ggagtttggc ggtgaaaaga ttgacccaaa tcgtatttat tctgacaaag
     2941 aaattgctga gcgttgggca aaagatttga agattgcgga gagttgtgtc aatcgtcatt
     3001 ttaatggtaa agacatgaac gataatcaat tttcgggaat gacgtccgct gtatttaata
     3061 tgggttgtta taacatgaga ttttatcgga ataaacaagg tcaatatgtg cagactacca
     3121 tccataaact cgcagtgaat aaacaatttg aggagatgtg tcatcgacta cctgacttta
     3181 ttcgtgccag tggtaaggta ttgaacggat tggttatccg ccgtgaaaag gagaaagcat
     3241 tatgcttaac tggattagtg gcacgatagc cattgtgatt ttgggcttgt gtgtatggtt
     3301 atggggtcag tcacagatga tagatagctt aagagctgag aaccgcgcac aagcccaaac
     3361 cattgagcag cagcaaaaag ccaatcaacg gctaaccgat agcttagagc aagagcgaca
     3421 agcggtcgaa aaaatccaaa aaattgcaaa tgagctgcgg aataaagtgg agatggccaa
     3481 gaatgaaatt acatcaatac tggcacaaga cagttgtgct aaagctgatt tgcctaatgg
     3541 cgttgctgat agcattaagc ggctgcacca gcagaacaat cacaagcact gagtatttgt
     3601 atccgccggc agcttacctt gtgccgtgtg ggcgaacaga atttagcggt agaacctatg
     3661 gcgatacggt tgagtatctc gtcaaagtga tgggagagcg tgatttgtgt gctaatcaaa
     3721 ttgaccgtat cagagaatgg caagcacaaa ccaaacaagg gtttaaatag ctaattatct
     3781 aattaaccgc tattgaaaat gggagcgtaa cagctccctt tttgttttga tggaaagtaa
     3841 atattacata atttagctat ggtttcgggg ttggttggat aaaacaccga ggaaatacct
     3901 aagtgatgtg atttatataa aacaaaaccc cgaacatttg cggtgttcga ggttttttta
     3961 ttacccattg aaacggaatg agtaacaagt tatggaaatt attacatttt taaccgtaac
     4021 catcaaggag attcttatgg aatatggttt atggcaaata agcctagcag taacagtccc
     4081 tattttggcg ttcgtgtcgc caaagctgat taatgctatt gctaatctat taaatgcaat
     4141 gaagtaaagg aatttaaccc aatgactaaa aaaggcgagg ttaaagccac gtctaaaggc
     4201 gtgggtaaat taaccgataa acagaaacga tttgtagaag agtatctgat tgacttgaat
     4261 gcgactcaag ctgcgattag agctgggtac agcgaaaaaa cagcatactc aatcggagaa
     4321 gagaacctga gaaaacctga aatcagaagt gcaattcagg aggctcaaaa taaacgctcg
     4381 gagagaaccc aaattacaca agatgatgtg ctaaatgggt tgcttgaagt gattgcaatg
     4441 agtactggta aaaaaattgt gacagaaact gatgttgcaa aaaatgacaa tggtgagttg
     4501 gtcggttttg atattgcaaa aacaaaattc gaacctgccg ccgcaaataa agctcttgag
     4561 ttactcggta aacatttagg aatgtttaaa gacaaggttg atttaattaa ttctgatggt
     4621 tcactgaatc gaccgatggt gattgaatta attgctccga gtttagacga tgaaagcaca
     4681 gattgaacta ccacctaaac tgttgcctgt ttttgccaaa gattatcgtt acaaaggtgc
     4741 ttatggtggg cgaggttcag gcaagactcg ggcatttgcc aaaatgtcgg cagtgtctgc
     4801 ttataaaaga gcaatgcgag gggaaagtgg cgttattctt tgcggtcgtg agtttatgaa
     4861 ctcattggaa gaaagctctc ttgaagaagt taaacaggcg atcaagtctg agcctttttt
     4921 agcaaatttt tttgatgtcg gcgagaagta tgttcgcact aaagatgggc ggatttctta
     4981 tgtgttttcc ggacttcggc ataacttaga tagcatcaaa tctaaagccc gtattttgat
     5041 tgcgtggata gatgaagcag aaacagtaag cgaaactgct tggcggaaat taattccaac
     5101 cgtgcgtgag aataattccg aaatatgggt aacttggaac ccggaaaata gagggagcgc
     5161 aacagatact cgcttcaggc aaaatccacc tgaaaacagc tgcataattg aaatgagtta
     5221 ccaagataat ccttggtttc ctgatgtgct cgagcaagag cggctaaatg acaaacagcg
     5281 gcttgatgat gcgacttatc gctggatttg ggaaggtgct tatttggaag cgagcgaagc
     5341 gcaaatcttt cgcggtaaat atcaagaaat ggaatttgtg ccgaaccctg attttgatgg
     5401 cccatattac ggcttagatt ttggtttcgc gcaagatccg acggcggcgg tcaaatgctg
     5461 ggtatttaat ggcgatctgt acatcgagtt tgaagcaggc aaagtgggct tagaacttga
     5521 cgacaccgca gactttattg ccaaaggcgt gccacaaatt gccgatcacg ttgtgcgtgc
     5581 agattcggcg cgtcctgagt caattagtta cctcaaacgt cacggcttac cgcgcattat
     5641 cggtgtggag aagtggaaag gctcggtgga agacggcatt gagcatatta agtcctacgg
     5701 caaagtcttt attcacccac gctgtcagca aacgctcaac gaatttcgcc tttattcgta
     5761 caaaaccgac cgcttatcgg gcgatgtatt gcctgtcgtg attgatgccc ataaccactt
     5821 tattgatgcg ctacgctacg cattaacgcc gttgatgcaa gttaaaagtg ccaaaggagt
     5881 tttactatga gcctagagca agacagactg gcttttttag ccgaagccct agggcttggc
     5941 aatatcaaac gaagaacgtt atggaaggag tttggctacc ctaatacctt aacattcaac
     6001 catttcttaa aagcctataa gcgcaatagt atcgcttttg cagcgattaa ccgcttactt
     6061 gacggttgtt gggttgactg ccccgtaatc gttgagggtg agcaaaagaa cgaatcaaag
     6121 cagacaaccg aatgggagtc caaagttgaa cgttttatga aacgctactg gtcggcaatc
     6181 aaagaggcag atagacgaaa ccttgtcggt aactattcgg cgttattact tcaagtaaga
     6241 gatggtcaac aatgggatca gcctattttg caaggcgcgc tatctagcat tggagagttc
     6301 ggactggtta aactgatccc cgtgtggcag tcacagcttt cagtgacaga gtttcaagag
     6361 gatgtgaccg ccgataatta cggcgaaccg ctgatgtatc aattcagcga atctgccttt
     6421 ggcaaaaaaa gcgtgtcacg aaatatcaag gttcacgcaa gtcgtgtaat tttgctcaat
     6481 gagggtggcg actttaattc ccctcattct ggagttcctc tgcttgaggc gggttacaac
     6541 aagctagttg atctcgaaaa aacatcgggc ggcagcgccg aaggttttct gaaaaacgca
     6601 agccgacaat tagggatcaa attaacaaaa gatgttgatt tgagacagct cgaagacagc
     6661 gcaaaagccc ttgggttttc ttcattttct gatgcgttga acgacaagat caagaaaatc
     6721 aactcaggaa cagactcagc cttgattact cacgaaggtg atgcctctgt gttgtcagtc
     6781 gcaccagcag atccgaagcc aacgtgggaa atttctgcaa atgagtttgc cgcctcagta
     6841 caaatccctt tcacgatttt gttcggacag caaacagggc gattggcaag tgacgaggac
     6901 aaaaccgact gggcaaaccg ttgcaacggt cgtcgaaatg gttttctcac cgatgtgata
     6961 acacaactac ttaatcgctt gtggttcatc ggtgtgctac ctatgccaaa aaatagcgat
     7021 gtcacagtgt cttggtctga cttacttgca ccaagcgaaa aagagaaaat cgcaaacgca
     7081 caggctttgg cttcagttgc aactacatcg cagtctgcct ttggttttgc cgcggtaaca
     7141 gcgaacgaaa tccgcgaatc tttagggttt gaacctctgc ctgataatct gattccgcca
     7201 acaattgacg acgaaaatga agatcaagac gaaaatcaag ccactgcgga ttccgacaaa
     7261 taaagccgat ccgctcaata tgggagtgtc ggttgccaag ctatttcgtc acattgatgt
     7321 catttactca caaattaagc gctccattaa gcaacaaatc ttgcaaaaga tgtcactgcg
     7381 actgcaagca aataattttg agtattttcc ttcgtatctt actgcgactg agttggcgga
     7441 tttgcttgaa accttgcaaa agattatcga caaagagatt ttgtcgaatg gttctcaagg
     7501 cgaaaatctc tggtttgact cctatatcga cgaagcagca ctaaaaggca ctcagtctgc
     7561 ggtcactgat ttaggtctgc aatcagaggc ttatcgcagt cagcgaaact tatcatcaat
     7621 cgttttcagt cctgcgtact tcaaccgatt ggcgattgca cacatggcaa gttatagcga
     7681 gtggcaaggt ttaagcgacg agttgcgaaa atctttggcg ggggtgatca cggaggcggt
     7741 tttaaacggc aaaaacgtga aagaaactgc ccgtgagatt cggcaaaaac ttgatgtgtc
     7801 atcaaaacgg gcgaagcgaa tagcgcaatc aagccagttg gcggcatatc gtcgggcaga
     7861 atggcaagag gcggaagagg caaaagaaga acttgggcta aacaccaagc tcttacattt
     7921 ttcagcgctc aaagctacta cgcgattagc acacgcccaa cgccacggca aatacttcga
     7981 tgttgcagag gtgcgcgaat ggtatagccg agacggcaac caattcaact gttactgcaa
     8041 gcagtctgtg gttgtggtca acgccgacgg taaaacagat attgagcctc tccttgttgg
     8101 gttggctaaa gaacgtaaac aatgggtagg agcattaaaa aatgtcaaaa aataacgtga
     8161 acatcgtcac cgtcattaac agcaaaaata tcagcacaga atctattgac ggagatcaac
     8221 acctgattat ccgcggcgtt gtgccgattg ttgatgatgt tgtgatgaac gacggacttt
     8281 atcctgcgga tgaaatcaat aaaagctaca acagcttaga gggcaacttt atgccgcttg
     8341 ggcatccaaa aatcgaaggt aaatacgttt cagcccaaga tgttcgagcg gtgaacaaac
     8401 atcacgtcgg tgcgtgggcg aagaacgtac gcaaggaaag tggcaaagtg ctggtcgata
     8461 tgtatatcaa ccgccgcttt gcggaaggtt cagaacaggg caaaaccttg cttgaacgac
     8521 ttgacggaat ggtgacaaac accaacgctg aacctattca cgtttccaca gggctgattc
     8581 taaacaaagt caagcaatcg ggtaaatcca aaggcaagaa atatagctgg attgcgacaa
     8641 atatgtcgtt cgatcatatt gcaatattgc ttgatgtgcc gggcgcggcg acacctgatg
     8701 atggcgtggg gatttttgta aaccaagacg gaagcgaaat gggggtggaa aatgtaaacc
     8761 taacacaagc ggcggattac cgcacagaaa agctgtttga caaagtacga ttttacctga
     8821 tggcgaactc agatttatcg tttgaagaaa ttcatcgcgc gctgcgtgaa gctattcgcc
     8881 ccgaaggcaa agataagtgg tcattttggg tcgaagctgt ttacccgaaa tacttcatct
     8941 attcggacga taacagcggc aagaaataca agcggagcta ttttattgac gaaaatgaca
     9001 atgtgcagct cactagcgaa cctgtcgaag ttgtcaagaa gattggctac gaagaaatta
     9061 caaccaatga ggaacataat ccaatgaaaa ccaaaatctt agccgtgttg aatgcggcaa
     9121 acgtgaaaac ggaaggctta aatgacgatc agctcttgga agcctacaac aagctgcaag
     9181 cggataaggg taaagagcct gaaaagccta aaaatgaaga tgacagcgaa attgatgaga
     9241 aaatcaagaa agcagtcaat gccgcgattg agccactcca gcaagccttg caagctaata
     9301 ctgacaaaga gcaagcagca atgcgtgcgg cggtgaaagc caagttcaat atgagcgatg
     9361 ccgcagtcaa tgctttgcaa ggcgaggtat taactgagtt gtatgcgcaa acgcaacaat
     9421 cggtcggatt aaacaataat tcggcaaacg gcaacggcga caatcaatgg gatggttact
     9481 cactcaacca agaggagaaa ggcaatgagt aatgtaattt atcgcggttc ggtcaagcgt
     9541 gaacctcaaa cggtgaatat cgtgatcaac gatacttcgg caccgggtgc agtagttaaa
     9601 ctccacaacg gcaaattaga ggcggcggct gatttaaaag gtcgccgttt tttattgggc
     9661 aacaaccgct ttaaggggca gacaatcgaa caagcgtatg cgaagggcga tactgcaacg
     9721 gcgtttcgtt tagagcctga acaggagtat tacgcgcaaa ttgccgacgg cacttataac
     9781 tttggcgatg aactcacggt aaaacaagcg ggcggcaaac tgaccaaagc ggagacgggc
     9841 gatgtagtgc tatttttctt cgacgaagaa tcgcagcgtg taatcagtgg cggcaaaggc
     9901 tatgccgatg tcgtggtggc aaacgcctac actaaataag aggtaacaaa gcaatgttga
     9961 aattcacaaa agaacaagaa cgcttcgtga ttaacgagcg gatcaattac gacaaaaaac
    10021 acgcgctaat ggcagcaaat tcggcggggt tattgggcaa cgcgatgact ttgccgaaag
    10081 atgtctgggc ggaatgggat cgtgatgcag tgcaaattca gcgcgaagaa ttggtggtgt
    10141 ttaacgattt agcgggcatt tcaaaatcaa tgccgattgg caaacttatt caccatttcc
    10201 aaacggtatc tgatagcggt tcggttaata tctcattaga cggtcgttca tcagcgaaaa
    10261 ccgataacgt ggtgcttaac taccacggta caccgttgcc gattattgat tccactttct
    10321 cttttggctg gcgcgatatg tcggcagctc aaagcgaagg gtatcagatc gacggtgcag
    10381 cacgcgcgaa cagtctccgc aaggtggctg aaaaaatgga agatctcgct ttaaatggtg
    10441 attcctctat tgtggttggc aatgccaagc tttacggctt gcgtactgcg ccaaatcgta
    10501 tgactaacac acacaatctg gatttagcca ctgcgacacc gaaagaaatt tacgatgtgt
    10561 tccgtgactt gattagcaaa ttccacgcga agaactacta ctctcctgta acgctttatg
    10621 tgaactatgg cgactatttc gcaatgagta cacgtgatta ctccgagcag aaatccgaag
    10681 gatctatctt gaacaaagtg atgacgattc cgcaaattgc gaaaatcgtg ccagcaagcc
    10741 gtgtaccgca aaatgaaatt ctcggcttgt gcaagcgttc ggatgtgtac caagtgctta
    10801 acggtatgcc gttagtgact cgtccgattg cgcgccataa tgaaaccgat gattactcgt
    10861 tccaaattat ggcagccgtt gccgtggagt tcaaattcga cgataaaggc aatgctggct
    10921 atatccagta cactaaatcc taaggcggtg caaaatgaag tggctattaa cacacgatag
    10981 ccacgagttg aagaaaggcg atgtttacga aggcgaaaca ttaccgcttt ggcttgtggg
    11041 caaagctatc gaaatcgaag aaaaatcctt tgaagttgca acgccttctg atcacgctga
    11101 cggcgaaact ggcgaaactg gcgaaactgg cgaaactggc gaaactggcg aaactggtca
    11161 gaaaggcaaa aaagataaag gcaaataact atggcagcag aaatagagct atccgaagcg
    11221 cgaacaacgc ttgacgaact gggtttcact tcgccgaact ctctgcttga gctttacgtt
    11281 cagcaaacga acaccttaga ccaggcgttg aacaaatcgg ggtacagcga agaaacacag
    11341 aaactgatca agctctatct ggttgctatt cttgcaattt catctggggc gcgccgtata
    11401 aagtcagaag gtgcgcctag cggtgcaagc cgaacgtttg agtatgatcc aaacgcgcta
    11461 gacaacctta agtcggcgat tcgctcaatt gatccgaaag gttgcgctga aagtttgcta
    11521 cccaaagata aagttgtcgg ctttttcgat gtggtcggag gctgctaatg tcaaatttat
    11581 cgaattggtc ctacaccgca aaagccacgc tttggcaggc taaaggaaag aacgatgacg
    11641 gcgttttagt tttttctacg ccacaaatca tttcctgtga ctacggtgca gatagaaagc
    11701 gcgcacgttt tgagattggg cgtgaacaag cggtcaaaaa tgtgatctgg acggagttcg
    11761 cccacgccaa attaggcgat tatgttctga ttggcgaaag cgagcaagcc gatccgattt
    11821 tggctggcgc agaggaaatt attcatatac agcgctttgc tgatacgttc gaccgcaatc
    11881 gtgatgattt tgcgctgata acaggcgggt aaaatgggga tcaaagtaaa aggcataaga
    11941 caggtcaagc agcggctgaa tcaggttgtt ggcgaggttc agagccaaaa agcaactcgg
    12001 gcaatgtttc gcattttgaa tgcggttgcc cctcttgcgg cgcactatac gcctgttgat
    12061 acctcaacgt tgatcaacag tcaattcact gaaatggaag tgaacggcac acgcttgatt
    12121 ggaagagtgg gttattctgc taattatgcg gcttacgttc acgatcctaa tatcaagcaa
    12181 aacttccgca agccttcagc gaagaaagag tttttgactt ccgcgctgaa cgaatcaaag
    12241 gctacgatca aatccattgt taaagaggag ttgtcactat gatttcttat gtcaaagcct
    12301 tcaaacaatg gttagaggct cactctcttg cagacggcta tgttgtgcag ctttaccagt
    12361 gggaggatac gcaaaaagcc aagcctgtta ttgttattca gccaaatagt ggttcgccgc
    12421 aagtttctga cctgagcagc gaacactatc tgctaattag ccttgttgca ggtaaaaatt
    12481 caggttacac aatcgaagag cgagcaaggg cgattatgtc aaagatttta gttgagcctt
    12541 tcgcttcctt tggttacatc gaatcaatgg gcggattacc cgccccaatt ttcaccgaag
    12601 ataatcgaat gatttttcgc ttaccacttc ggattatttc aacaaatcaa gaggagtagt
    12661 ttatgggttc tccatctcca caaaataacg cagaaaatct cgtggtgggg cgtgccgtag
    12721 ttttagagta cggtacgact gatgcaaagc cacaagaaag cgaatggaag gttgcgggcg
    12781 caatgacgac aaagagttgg gattttagcc caaattcggt tacatcagag gctgatgatg
    12841 ctggcggctt ccctgaaacc ttaattacaa actcagactt tagtatttct ggtgacggtg
    12901 agtggcgcaa acgaccaaaa tcgaaagaac taggcatcaa agatctagtt gtgttatacg
    12961 caaatgcggt aaaaaatcgc acccaacctt acatttgggt tcgtttgaaa tacgcaggct
    13021 taacaattct cggaaaaatg gttatcactg cattaagtag cgaagcccca accaatgact
    13081 tagtgaaatt ctctatagag ttcaaggttg gcgattcaag cactatcgaa attgctgcag
    13141 cgtaaaaaat cccaccctct ataacaagag cggtgggatt atcattatcc tagggatagt
    13201 tgtaggggct ttcctaagct agccaaaata cgaccaatag tgtcgatttt tgtaatatgg
    13261 cgaggggcta aaattcgctg tacttctggc ggacggatat tagttaatcg ggcaatttct
    13321 gccttgctta ccgcttgttc ttgcattgta ttatgcaaaa gcacttttgc gtagatgctc
    13381 tctggcataa acacaggcac ttcgtcggta tttactgggc gagtgagcgg aaagcgtcta
    13441 tcttcatcga aataaatttc aacacaagat agtagcacgt cttctgccat ttccattgct
    13501 tcttcaaatg tatcgccttg ggtgatagct tctggcaaat caggaaatgt cactacaaag
    13561 cccccttctt cagcgggggt aaataacgct ggataaaaca tattttctcc ttattcaagg
    13621 gtgtagtgaa agccccttaa catcaggggc tttatattat tttaagccta gttgcttttt
    13681 aaccccttcc actaagcctg tttttaactc ttggcttggg tgtttgggga ggtggcttct
    13741 tttgcccttg tagtagagtt tcaaatgctt tgatccattt tcaacctcta ccccattagc
    13801 ctttagccac cttaggaatt cgctttgctt cactacctcc tcctatttgt ttaacttggg
    13861 ttcattatat gcaaaaatgc taactttgtc aacagaaagt tagcaaaaat gctaattttt
    13921 ttgttgaggt gaaaatggtt agctatccaa ttactgaaat tggtgaaatg cttattgcaa
    13981 ccgatgggcg agacttttta ttcagaccga gtttcaaaaa tatctacaaa attggaagcc
    14041 cacaagaaat tgtaaaaatc tatgcactat tgcacggctg tgagattcga gagatattgc
    14101 cgcacatttt aaccaaatcg gagtctcatc aatcttactt ttggtcagtg ctgaattcgc
    14161 ctgtttttgg cagaaaaatt ctgcaaaacg caatgatcgt gatgtcgtgc tgttgcgatg
    14221 atgatatttc cctgttgatt ggcgagtggt tgccgtcaaa gtctggcgtt aggtacaagt
    14281 tgggtaaaat gccacctgag acaattatca attttgcaaa aaatttaatg ggtcacggag
    14341 tgattggttg ctgcgaattg ccaaagaaag aacaatctgc aaaaaatgaa ttttcagaaa
    14401 gttttgatgc tgttgagtac ataagtttag cccgaactca tttcaatatg agccgcgaag
    14461 acgctgaaaa tctcacgatg accgaattgc agcaacttct aaaaagtcaa atgcctgccg
    14521 aaaataatag ctatggacag ttcaccgaag aagagtacga cagaattatg gcggaatatg
    14581 agaaaagaag agcggcttaa atagccgcta acatttaaaa gaacctacct gatagaacgg
    14641 gagtgaaatc cttgtaatgt gctgaataaa aaagctctct tatgtcattg agtagctcaa
    14701 attcatcttt ggatcttgcg ttgcagattg ccacatagtc atctacgcag gataaaatac
    14761 gttcaatact gacttctttt atccagcata cttcttggtt ttcattcagc cagttggcaa
    14821 agtcttgttt agtgcagtct tttttcataa gttctccttt ttgattattt gcaaaaaaaa
    14881 tcatatcaaa tcatccgttg ttatctattg gcgaaaataa tttttgcgac acagatc
//
LOCUS       DANLRW010000063        14630 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.063, whole genome shotgun sequence.
ACCESSION   DANLRW010000063 DANLRW010000000
VERSION     DANLRW010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14630
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.063"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            153..1661
                     /locus_tag="PXA71_001601"
     CDS             153..1661
                     /locus_tag="PXA71_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDL5105701.1"
                     /translation="MSNQSSNAPQRETFSGRGAFIMAAIGSAVGLGNIWRFPYTTYEN
                     GGGAFILPYIIALLTAGLPLLFLDYSIGHKYRGGAPLAFRRFSSKFETFGWWQVLINV
                     IIGIYYAVVLGWAASYTYFSFSGAWGDKPVDFFIGEFLKMGDITQGVSFEFVGMVTGP
                     LIAVWLIAIAVLAMGIKKGISAASNLLMPQLIVMFLVLVGYSLTLPGAAKGLDALFTP
                     NWEKLADPSVWIAAYGQIFFSLSICFGIMITYASYLKKETDLTGSGLVVGFANSGFEL
                     LAGIGVFAALGFMATAAGQEVNEVAKGGIGLAFFAFPTIINQAPMGALVGVLFFGSLT
                     FAALTSFISVIEVIISAVQDKLNSGRVKATLLVGIPMMVVSVLLFGTTTGLPMLDVMD
                     KFVNQFGIVAVAFVSLIAIVTSEKLSTLEKHLNEVSSFKVGFIWRLCIVITSGVLAFM
                     LFSEIAKVYREGYEGYPSWFVNTFGWGMAIGLVVVAYLLSKMAWKNEPKGDE"
     gene            1661..1759
                     /locus_tag="PXA71_001602"
     CDS             1661..1759
                     /locus_tag="PXA71_001602"
                     /inference="COORDINATES: protein motif:HMM:NF028261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine/alanine import family NSS transporter
                     small subunit"
                     /protein_id="HDL5105702.1"
                     /translation="MSSAAIITMVVAMTIIWGGLLFAIKRLPKEEQ"
     gene            complement(1807..2070)
                     /locus_tag="PXA71_001603"
     CDS             complement(1807..2070)
                     /locus_tag="PXA71_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrxA family glutaredoxin"
                     /protein_id="HDL5105703.1"
                     /translation="MFVEIYGRLSCPYCVRAKTLAEKMKQELSDFDFKFIDMIAENIS
                     KQDLEPRVGKPVATVPQIFVDNNHVGGCTDFQAFVEEKFGITV"
     gene            2230..3564
                     /gene="srmB"
                     /locus_tag="PXA71_001604"
     CDS             2230..3564
                     /gene="srmB"
                     /locus_tag="PXA71_001604"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HDL5105704.1"
                     /translation="MTQLMTFEELDLSPQLLKALAHKGYNRPTAIQQATIPAALEGRD
                     LLGSAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEQAQALAK
                     FTQLSIATITGGVAYQNHGEVFNKNQDIVVATPGRLMQYIKEENFDCRAVEVLIFDEA
                     DRMLQMGFGQDAEKIAAETRWRKHTWLFSATLEGELLEDFAERLLNDPIKVDAEPSRR
                     ERKKIQQWYYHADNVEHKTKLLARIISEFSVERAIVFVRRREDVRELSETLRKRGIRS
                     TYLEGEMAQTQRNQAINRLKEGVVNVLVATDVAARGIDIDDIDFVLNYDLPYSADTYL
                     HRIGRTARAGKKGSAISLVEAHDYKLLGKIKRYTEEVLKPRIIEGLEPRTKAPKDGEL
                     NVTSKKEKARIKKKKEAKKEAAKPKVKVRHKDTKNIGKRRKPSSESAAVKQA"
     gene            complement(3633..3926)
                     /locus_tag="PXA71_001605"
     CDS             complement(3633..3926)
                     /locus_tag="PXA71_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5105705.1"
                     /translation="MSKTMQQKAAEAHNMCRLKGDSMLDNADRQIAFEAVYESEELAQ
                     QAVEFFAQKAKSVETEPCEIQSEITQIAEGFLMKMWITFSCQAEVILFQMAVR"
     gene            complement(3928..4590)
                     /locus_tag="PXA71_001606"
     CDS             complement(3928..4590)
                     /locus_tag="PXA71_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL5105706.1"
                     /translation="MPFPDEISELKGYFDGTNPVSAYPAQGLNVPFYILGSSPESAYL
                     AAERGLPYAFASHFAPRFMDDAIRIYRSHFKPSDVLDKPYVILGVNAIVAETDEEATQ
                     LATTQTQFFLNVVTNAQQNLQPPLESDDKVWENFVKAEIVPHFGPVAFEQNALYRQEK
                     TVVRQMTECSLIGSPQSVEQQLKALKARVEIDEIMAVNYIFDEQKQHQSYTWLKQITD
                     KV"
     gene            complement(4574..5026)
                     /locus_tag="PXA71_001607"
     CDS             complement(4574..5026)
                     /locus_tag="PXA71_001607"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MsnO8 family LLM class oxidoreductase"
                     /protein_id="HDL5105707.1"
                     /translation="MVLQVLNSKAIQPFLYANSENKMTNLSILNLVPIREGQTAKQAV
                     DSMVKLAKHAENIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLP
                     NHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTASALRPEFAFPR"
     gene            complement(5046..5684)
                     /locus_tag="PXA71_001608"
     CDS             complement(5046..5684)
                     /locus_tag="PXA71_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL5105708.1"
                     /translation="MKKFALKTVLVALSALFAFNATAVAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELNYKIPSQIKAKLPADSKLVQYHVNFLGRQSENLTRAWAL
                     AMALGAEDKVKTALFEAAQKDAFKSMDDIRAVFIANSISAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFSDSSSTNDFIQRYIDAVVFLSKK"
     gene            complement(5728..5997)
                     /locus_tag="PXA71_001609"
     CDS             complement(5728..5997)
                     /locus_tag="PXA71_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HDL5105709.1"
                     /translation="MKCKRLEELLELLGEHWRKNPDLHLIDILQQLSVEVSEPDNFHA
                     LRDEVLIYQLKMRNADKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            6089..7198
                     /gene="mobA"
                     /locus_tag="PXA71_001610"
     CDS             6089..7198
                     /gene="mobA"
                     /locus_tag="PXA71_001610"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL5105710.1"
                     /translation="MEEKISAVILAGGLARRMNGAEKGLQLLDQKPLISHLLARLSPQ
                     IEDIWLNINRSVEQYQQLYPELPYYQDSLPDFQGPLSGMLSGFEQIESDYLLFVPCDT
                     PFIPTQLLHKLHTALRINQAQIAYAHDGDRPHPTVALVHRSVAENLRAYLASGERRLL
                     WFFQTQKSVAVDFSAYKAAFRNFNCLEDLTAFNPYPIKTLAITGYSGTGKTTLLEKLI
                     PKLTACGIRVGLIKHSHHNVDIDKKGKDSYRLREAGANPTMVVCDERWALMTETKQAA
                     ETKQAVEFSQLIAKFDPETVDLVLVEGFKHETMPKIQLHRKEIEKPLPALDQWTIATA
                     TDYPLERENRLDINDVEQLADFIRQWLEASKEPAN"
     gene            complement(7253..11764)
                     /locus_tag="PXA71_001611"
     CDS             complement(7253..11764)
                     /locus_tag="PXA71_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5105711.1"
                     /translation="MINKNFPLSYLASFVAFAVSLSATASVFRDDIDLQYYRDFAENK
                     GKFTVGASNIEIKDKSGNTLDALFPNVPMPDFSAANRNLGIATLVAPQYLVSVAHNTQ
                     YNTVEFGAPGTNADAHHYTYKVVDRNDYGIVEGGQHQDYQVPRLNKLVTEVAPATVTD
                     LGNNASAYQDSSRFTHFARLGSGRQIVKNTEHKDNQISTSYQYLTGGVHLPIAVHNSD
                     YWLDFRGNALNNSPYGALTAFGTRGDSGSGVYGYDQKTKRWLLLATYTFGTPANNYYN
                     RAGIIRQDYHDKQFAEDIAGTLTNAQQNAVFEWSAQGKDSSIGNKGKNLTVSLADRSI
                     KDNSASPLGYGGTPQLQLPQDNTGKTLNIEGQDSTIVLKTDIDQGAGALNFNANATVR
                     PENDQSWVGAGIVVAKGKQVNWQVKNPQGDRLSKLGEGTLHINGKGENLGDISVGQGT
                     VILTQQAGENGKKSAFNQVGIVSGRSTVVLNSADQVDPNKIYFGFRGGRLDLNGNNIA
                     FNRIQNSDDGARIVNNHLQKAATLTINGPKPPEATDLKWGTWKENSADIYEYINPHAN
                     NRTDYFTLKGNPNQYMPTNGASNAHWTFLSSNKDAAVKQVLAQKGLEHRYNSFNGFIG
                     ETDNTQHNGRLNVVYDPKASTPPATASEVTWGKGLVAGADIYLFTNPKTKIREYFALK
                     GDPKQPVPRGGLSSEHWEFLAADRNQAINKVLARKNAPIEQEKLNSIYTFSGGLNLNG
                     DLTVKGGKVLLSGRPTPHAYDAINKQDVVYADDWQNRQFKADNMQLNQYAQLYVGRNV
                     SNLQANLSANDHAQLHLGFINEQTPSCYYSEYTGKTSCDTQAVVSNEIFATLPTTQIN
                     GDVSLAEQSQLHIGKANLIGTIQAAATTSIRLANQASWTNTGDSRTGNLVAENGSTIN
                     LNEKFVTGEIPTRFNTLIIDGNFQGNAKINYLTDIAAGKGDHLQVNGLAEGTFTLALR
                     NSGKEAEVVSPLSLLTLTHQAQADKAKVSLENGYVDLGAYRYVLANRSNGYRLYNPLK
                     DAKDRNQSIATAKAELDHAIAEADKQKQEISRLNAEAEKERQAEKNAKQAAANAQSQL
                     SQANSELTRLQQYADYYRRYYPTYYRQIQGQITVAKQKVTQASAALTTAENNAKASAA
                     QIANVEQAVETAQNIAKQVEAKLATLRITAGNSEAILNAEALKLCQENGANCEHLQAH
                     ADTDSSNIQQSDWVSQYANTALSELSAQANSALQIGQDLDRQLFAKHDKFHVWSSIEH
                     QKTEHQSDLYRPYEQQTNLTQLGIELPLANGINAGVMLSRNHANAEFDEGVNGKSNLL
                     MASLYGKWHSENGTFVSLDGSYGKAKNRIDLFGENRFNRHIMAIGANLGHNFDLAGVQ
                     VQPAVGTRYYRFSAQNYKLGEVEVRSPKAHFMAYQAGVKVSKAFDLSSWKVEPSLAAH
                     YVDASSKRLSVAVNDNTFSQRFGRYLKTEVGVGVTKGQWQLSSHLGLLKGNEIGKQHF
                     AGFKLGYSW"
     gene            complement(11948..12952)
                     /gene="fbp"
                     /locus_tag="PXA71_001612"
     CDS             complement(11948..12952)
                     /gene="fbp"
                     /locus_tag="PXA71_001612"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HDL5105712.1"
                     /translation="MKTLGEFIIEKQAEYPGAKGELSGILSSIRLAAKIIHREINRAG
                     LSQDILGTAGSENVQGEAQMKLDVFANETMKKALLAREDVAGFASEEDDNFVAFDNER
                     GRNAKYILMTDPLDGSSNIEVNVSVGTIFSIYRRVSPIGTPVTQEDFLQEGRKQVAAG
                     YVTYGSSTMLVYTTGNGVNGFTYDPSLGLFILSHPDLKTPTEGKYYSINEGQYVTFPQ
                     GVKRFIKYCQETDEAIKRPYSSRYIGSLVSDFHRNLLKGGIYIYPTSTVYPKGKLRLL
                     YECNPIAFLAEQAGGMATDGINPILDIKPTELHQRVPFFVGSTSMVKQAGEFMQEFAK
                     "
     gene            13076..13867
                     /locus_tag="PXA71_001613"
     CDS             13076..13867
                     /locus_tag="PXA71_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL5105713.1"
                     /translation="MNNLRIKMISPEIALAKYNELDVLEINHSKVKAKIALQGAQLLS
                     WQPKNTQQDVLWLSEIEPFQTGVAIRGGIPICHPWFGTDKKPAHGTARIQAWNLLEHT
                     SSADGIRVVLGLENQAKLEMILGEVCELYFTHLAPEPAQAALHTYFQVGDITKTEVQG
                     LATQCFDKLTNQEIEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETV
                     LWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRILVR"
     gene            complement(13935..14624)
                     /locus_tag="PXA71_001614"
     CDS             complement(13935..14624)
                     /locus_tag="PXA71_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HDL5105714.1"
                     /translation="MLQLRKANERGDGSFSWLKSYHTFSFANYYDLKHIHFSHLRVIN
                     EDFIAPNHGFGKHPHDNMEILTYMLKGRVAHEDSMGNKTEVKAGEFQIMSAGTGVFHS
                     EINPDPNETLHLYQIWIIPNQKDVTPRYNQDRFAPKEGATLILSPNAEEGSFKIYQDM
                     KLWRYQYPTAKSEQLALEPNRSYWLQVVKGNLNINGVELSTSDALGIRQEKALEINTQ
                     DDVEFLLFDLV"
BASE COUNT         3933 a         2995 c         3253 g         4449 t
ORIGIN      
        1 attgaaaatt gagcgttttt tatctgtttt tctatatttt tctactttac attcaacctg
       61 aaattgggca tattccgcac ttaaagtgtg attaatttac atttaactca attctttttt
      121 atataaaact ttatcagttt gaggtattta ccgtgtctaa tcaatcatca aacgcaccgc
      181 aaagagaaac gttctccgga cgtggtgcat ttattatggc ggctattggt tccgctgtcg
      241 gcttagggaa catctggcgt ttcccttata ctacttatga aaacggcggt ggggctttta
      301 ttctgccgta tatcattgcc cttttgaccg caggtttacc gctgctgttc ttagattatt
      361 ctatcgggca taaatatcgt ggtggtgcac cgctcgcttt ccgccgtttc agctcgaaat
      421 ttgaaacctt cggttggtgg caagtgctga tcaacgtgat catcgggatt tattatgcgg
      481 tggtactcgg ctgggcagca agttacacct acttctcatt cagcggagcg tggggcgata
      541 aaccggtgga tttctttatc ggtgaattct taaaaatggg cgatattact caaggcgtga
      601 gctttgaatt tgtcggtatg gttacagggc cgttaattgc ggtatggctg attgctattg
      661 ctgtgttggc tatggggatc aaaaaaggga tttctgctgc ctcaaacctg ctaatgccgc
      721 agttgatcgt gatgttctta gtgttggtcg gctattcatt aaccctaccg ggtgctgcga
      781 aaggcttaga tgcgttattt accccaaact gggaaaaatt ggctgatcca agtgtgtgga
      841 ttgccgctta cggtcaaatc ttcttctcac tctctatctg cttcgggatt atgattacct
      901 atgcttcata cctgaaaaaa gaaaccgatt taaccggttc aggcttagtg gtgggttttg
      961 cgaacagtgg ttttgaatta ttagcgggta ttggcgtatt tgcggcactc ggctttatgg
     1021 caacggctgc agggcaagaa gtgaacgagg tagcaaaagg cggtatcggc ttggcattct
     1081 tcgctttccc aaccattatt aaccaagcac caatgggggc attagttggc gtgctgttct
     1141 ttggttcact cacctttgcg gcattaacct catttatctc ggtaattgaa gtgattattt
     1201 cagcggtgca agacaaactc aattcaggtc gtgtgaaagc cacgctacta gtcggcattc
     1261 cgatgatggt ggtatctgtc ttgctattcg gtacaaccac cggtttacca atgcttgatg
     1321 tgatggataa attcgtaaac caattcggta ttgttgcggt ggcgtttgtt tccttgattg
     1381 cgattgtcac cagcgagaaa ttaagcaccc ttgaaaaaca cctgaacgaa gtttcttcat
     1441 tcaaagtcgg ctttatctgg cgtttatgta tcgttattac ctccggcgta ctggcattta
     1501 tgttattcag cgaaatcgcc aaagtgtatc gtgaaggtta tgaaggctac ccaagctggt
     1561 ttgtaaacac cttcggctgg ggaatggcaa tcggcttagt ggtggtggct tatttgctat
     1621 caaaaatggc gtggaaaaat gaaccaaaag gagatgagta atgagttcag cagcaattat
     1681 taccatggtg gtggcaatga cgattatctg gggcggttta ctttttgcga ttaaacgtct
     1741 gccgaaagaa gaacaataat ttgcaaattt ttgtataaaa aagcccgctt gttagcgggc
     1801 ttttggctat acggtaatcc caaatttctc ttccacaaag gcttggaaat cggtgcaacc
     1861 gccaacgtgg ttattatcca caaaaatttg tggtacagtt gcaaccggct tgccaacacg
     1921 aggctctagg tcttgttttg aaatattttc agcgatcata tcaataaatt taaaatcaaa
     1981 atcgcttaat tcttgtttca ttttctcggc taatgttttt gcacgcacgc agtatgggca
     2041 agataaacgt ccataaattt caacaaacat ataatgttcc ttctataaag taaaagtgag
     2101 cgaattgtcc gttaaacggc tctgtgtaag tgtaacaatt ttttcaacct tttaggataa
     2161 atttcttcac catcacggca agcagttaat gtgatatact ggggcaaatt tacaagtaga
     2221 gaaacagaga tgacccaatt aatgacgttt gaggagcttg atttaagccc tcaattactt
     2281 aaagccttag cacacaaagg ctataaccgc ccaaccgcta ttcaacaagc cacgattccg
     2341 gctgcgttag aaggacgtga tctgctcggt tcagccccta ccggtaccgg caaaaccgcc
     2401 gcttttttac tgccggcaat tcagcattta ttagattatc ctcgccgcaa accaggggct
     2461 cctcgcattt taattcttac cccaacccga gagctggcaa tgcaggtggc ggagcaagcc
     2521 caagcactgg ctaaatttac tcagttgagc attgcgacta ttaccggtgg ggtggcgtat
     2581 caaaatcacg gtgaagtctt taataaaaat caagatattg tggttgctac cccgggtcgt
     2641 ttaatgcaat acattaaaga ggaaaatttt gactgccgag cggtggaagt gctgattttt
     2701 gatgaagcag atagaatgtt gcaaatgggc ttcgggcaag atgcggagaa aattgcggca
     2761 gaaacccgtt ggcgtaagca tacttggttg ttttcagcga ccctcgaggg cgagttatta
     2821 gaggattttg ccgagcgatt attaaatgat ccgattaaag tcgatgccga accaagtcgc
     2881 cgtgagcgta aaaaaattca gcaatggtat taccacgccg ataatgtaga gcataaaacc
     2941 aaattattag ctcgtattat cagcgaattt tcggtggaaa gagcgattgt gtttgtccgc
     3001 cgccgagaag atgtgcgaga actcagcgaa accttgcgta agcggggaat tcgttctact
     3061 tatctcgaag gtgaaatggc tcagacccaa cgtaaccaag ctattaaccg tttaaaagaa
     3121 ggcgtagtga atgtgttagt ggcaaccgat gtggcggctc gaggcattga tatagacgat
     3181 attgatttcg tgctgaacta cgatttacct tatagtgcgg atacttactt gcaccgtatt
     3241 gggcgtaccg ctcgtgctgg caaaaaaggt tcggcaattt cattggtgga agctcacgat
     3301 tataaattac tcggcaaaat taaacgttac accgaagaag tactaaaacc tcgcattatc
     3361 gagggcttag agcctcgcac caaagccccg aaagatggcg agctaaatgt gaccagcaag
     3421 aaagaaaaag cacgcattaa gaagaaaaaa gaggcgaaaa aagaagcggc aaaaccaaaa
     3481 gtaaaagtcc gccacaaaga taccaaaaat atcggtaaac ggcgtaaacc aagtagtgaa
     3541 tcggctgcgg ttaaacaggc ataatgatac aagcggttat tttctgaaga ttttttgcaa
     3601 aaatttcatc aaaaataacc gcttgtttat atctacctta ctgccatttg gaacagaatc
     3661 acttctgctt ggcagctgaa agtgatccac attttcatca gaaacccttc tgcaatttgt
     3721 gtaatttcgc tttgaatttc acaaggttcg gtttcgaccg attttgcttt ttgtgcgaaa
     3781 aattcgaccg cttgttgagc cagttcttcg ctctcataca ccgcttcaaa ggcaatttgg
     3841 cggtctgcat tatccaacat agaatcgcct tttagccggc acatattatg tgcctcagcc
     3901 gctttttgtt gcatcgtttt gctcatatta caccttatcc gtaatttgtt ttaaccaagt
     3961 gtaggattga tgctgttttt gctcatcgaa aatgtagttt accgccataa tttcatcaat
     4021 ttccactcgt gcttttaggg ctttaagttg ttgttcaacg ctttgcgggc taccaattaa
     4081 ggagcattcg gtcatttggc ggacaacggt tttctcttgt cggtatagag cattttgctc
     4141 aaaggcaacc ggcccgaaat gcggcacaat ttctgctttc acaaaatttt cccacacttt
     4201 gtcgtcagat tcgagcggtg gttgcagatt ttgttgggca ttggtcacta catttaagaa
     4261 aaactgggtt tgggtggtcg ccagttgtgt tgcttcttca tcggtttctg ccacaatggc
     4321 attcacacct aaaatcacat aaggtttatc taacacatca gagggcttaa aatgtgagcg
     4381 gtaaatgcgg attgcatcgt ccataaagcg aggggcaaag tgtgaagcga aggcgtaagg
     4441 caagcctcgt tcagccgcta aataggcact ttcagggctt gagcctagaa tataaaacgg
     4501 cacatttagc ccttgtgccg gataggcgga aacagggttt gtaccgtcaa agtagccttt
     4561 taattcgctg atttcatcgg ggaaaggcaa actctgggcg taaggcagag gcggttcgca
     4621 tatcggtgcc gggggctcgc ccaagcccca gttctactcg gtttgggtag agtgtttcaa
     4681 gcgtgccgta ttgttctgcc acaatataag ggctgtggtt gggtaacatc acgccaccgg
     4741 agccgactct taatttttcg gtgtgggaga gggcgtgttg aatcaataat tgcgtggcgg
     4801 aactggcaag atttttcata ttatggtgtt cggcaatcca atagcgttca atgccgatat
     4861 tttctgcgtg ttttgctaat ttcaccatag aatcgaccgc ttgtttggca gtttgccctt
     4921 cacgaatcgg cacaaggttg agaatggata agtttgtcat tttgttctcc gagtttgcat
     4981 ataaaaaagg ctgaatagct ttactattca gcacttgtaa aaccatctcc ttaatatggg
     5041 gacgattatt tcttactcaa gaagaccaca gcgtcaatat agcgttggat aaaatcattg
     5101 gtcgagcttg aatcggaaaa tccttctaga ttaagctggt attgaccatt cacgaaaaac
     5161 gccggtacac cacgaatttg gaagtcttca gctaattgaa cttgtttatt gactaaaccg
     5221 tttactgcaa agctgttgat accgctgtca aactgttctg cactaatgct gttagcgatg
     5281 aagaccgcac gaatatcgtc cattgattta aacgcatctt tttgagcggc ttcaaacaag
     5341 gcggttttta ctttatcttc cgctcctaat gccattgcca atgcccaagc acgggttaag
     5401 ttttcagatt ggcgacctaa gaaattgacg tgatattgca ctaatttgct gtctgcaggc
     5461 aatttcgctt tgatttggct tggaattttg taatttagct caaaatcgta acagtggggg
     5521 cagtagaatg agaaaaattc caccacttct ttttgagccg atggggcttt acgcacctca
     5581 atatactctt tgccggcagt tggatctgct gcaactgcgg ttgcgttaaa tgcaaaaagg
     5641 gcagaaagag caaccagtac ggtttttaat gcaaattttt tcataatgat tccttcaaaa
     5701 atatgataag tgagaaataa gacaaactta atcgtttaaa attccacgag ctcggagcaa
     5761 tgcggtttta aaatcatctt cataatcttt tttaatgccc ggaatcggct caaatttatc
     5821 ggcgtttcgc attttgagct gataaatcaa aacctcgtca cgcagggcat gaaaattatc
     5881 cggctcgctt acttccaccg aaagctgttg cagaatatca attaagtgaa gatcggggtt
     5941 tttccgccaa tgttcgccaa gcagttccaa tagctcttct aaacgtttgc atttcatagt
     6001 atgcctctta aaaaacttgt tgaatagtaa gcggaataat atacttttag ccctcatttg
     6061 gcaaaaaaat tcaggtttgg agagggaaat ggaagagaaa atttcagcgg taattttagc
     6121 cggaggtttg gctcggcgaa tgaatggagc ggaaaaaggg ttgcaactgt tagatcaaaa
     6181 accgttgatt tcgcacctgt tagcccgact ttcgccacaa atcgaggata tttggctcaa
     6241 tatcaatcgt tcggtggaac aatatcaaca actttaccct gaattacctt attaccaaga
     6301 cagcttgccc gattttcaag gcccactaag tggaatgctt tccgggttcg agcagattga
     6361 gagcgactat ttactgtttg tgccttgtga cacgccgttt attccaaccc aactattgca
     6421 caagttacac acggcattac gcattaatca ggctcaaatt gcctatgctc acgatggcga
     6481 ccgcccacac ccaacggttg ccttggtgca tcgttcggtg gcggaaaatt taagagcgta
     6541 tttagcctcc ggcgaacgcc gattattgtg gttttttcaa acccaaaaaa gtgtggcagt
     6601 ggatttctcg gcatataaag ccgcatttcg caattttaat tgtttagaag atttaacggc
     6661 tttcaatcca tatcccatca aaaccctggc gattactggc tatagcggca caggcaaaac
     6721 caccttattg gaaaaattaa tcccaaaatt gaccgcttgc ggtattcggg ttggcttgat
     6781 taagcattcc caccacaatg ttgatattga taaaaaagga aaagacagct atcgcttgcg
     6841 agaagcagga gcaaacccga ctatggtcgt gtgtgatgaa cgttgggcat taatgacgga
     6901 aactaagcag gcagcagaaa ctaaacaagc ggtcgaattt tcacaattaa ttgcaaaatt
     6961 tgacccagag acggtagatt tagttttagt ggaaggcttt aagcacgaaa caatgccgaa
     7021 aattcaacta caccgtaaag aaattgaaaa accgttgccg gcgttagacc agtggacaat
     7081 cgcgaccgca accgattatc cgcttgagcg ggaaaatcgg ttggatatta atgatgttga
     7141 acagcttgct gattttattc ggcagtggct agaggcaagc aaagagccgg ctaattaatt
     7201 gactaaaaag cccctaaagt aagcgattgc ttagtttagg ggctaatagc aattaccagc
     7261 tatatcccag tttgaagccg gcaaaatgtt gtttgccgat ttcgttacct ttcaatagac
     7321 caaggtgaga gcttaattgc cattgacctt ttgtaacacc cacgcccact tcagttttca
     7381 gataacgtcc gaaacgttgg ctaaaggtat tgtcattgac tgccacactc aagcgtttgc
     7441 tgctggcatc gacataatgt gcggcaaggc taggctcaac tttccagctg gagaggtcaa
     7501 aggccttgct gactttcaca cctgcttggt aggccataaa gtgtgctttc gggctgcgga
     7561 cttctacttc acccagtttg taattttgtg cgctgaagcg atagtaacgt gtaccaacag
     7621 caggctgaac ttgtacgccg gctaagtcga agttatgtcc aagatttgcc ccaatcgcca
     7681 taatatgacg gttaaagcgg ttctccccga acaggtcgat acggtttttc gctttaccgt
     7741 agctaccgtc taggctgacg aaagtgccgt tttccgaatg ccatttacca tataggcttg
     7801 ccatcagtaa gttggattta ccgttcactc cctcatcaaa ttccgcatta gcgtggttgc
     7861 gggatagcat cacaccggca ttgataccgt ttgcaagcgg taattctatg cctaactgag
     7921 tgaggttggt ttgttgctca tacgggcgat ataaatccga ttggtgttcg gttttttgat
     7981 gttcgatact gctccaaacg tggaatttat cgtgttttgc gaacagttgg cgatctaagt
     8041 cttgcccgat ttgcaacgca gaatttgcct gtgccgatag ctcggaaaga gcggtattgg
     8101 catattggct tacccagtcg ctttgttgaa tattactact gtcagtgtct gcgtgtgctt
     8161 gtagatgctc acaatttgca ccattctctt ggcaaagttt tagtgcctca gcgtttaaaa
     8221 ttgcttcact atttccagca gttatacgta aggtagctaa ttttgcttct acttgttttg
     8281 caatattttg tgcagtttca accgcttgtt ctacgttagc aatttgcgca gcggatgctt
     8341 tagcattgtt ttctgctgta gtgagtgcag cactcgcttg tgtgactttc tgttttgcta
     8401 ccgtaatttg cccttggatt tggcggtaat acgttggata gtaacggcgg tagtaatcag
     8461 catattgttg caaacgggtt aattcgctat ttgcttggct aagctgagat tgtgcgtttg
     8521 cagcggcttg tttagcattt ttctctgctt ggcgctcttt ctcggcttct gcgttcaaac
     8581 ggctgatttc ctgtttttgt ttatccgctt ctgcaatagc atggtctaat tccgctttcg
     8641 ccgttgcaat cgactgattc cgatctttag catcttttaa cggattgtat aagcgatagc
     8701 cgttgcttcg atttgccagc acataacgat atgcacctaa atcaacataa ccgttttcca
     8761 gtgaaacttt agctttatca gcctgagcct gatgggttaa ggttaataaa cttaacgggc
     8821 taaccacttc agcttctttg ccactgttgc gtaatgcaag agtgaaagtc ccctcggcga
     8881 gaccatttac ttgtaggtga tcgcctttgc cagcagcaat atcggttaag tagttgattt
     8941 tggcattacc ttggaaatta ccgtcaataa tcaacgtatt aaaacgagtc ggtatctcgc
     9001 ctgttacaaa tttttcattc aggttgatgg ttgaaccgtt ttctgccact aaattgccag
     9061 tacggctatc cccagtgttt gtccagcttg cttggttagc taaacgaatg ctcgttgttg
     9121 ctgctgcttg aatggtgcca atcaggttcg ctttgccgat gtgtaattgg ctctgttctg
     9181 ccaagctgac atcaccatta atttgtgttg tgggcagtgt tgcaaaaatt tcattagaaa
     9241 cgaccgcttg tgtatcacag cttgttttac cagtgtactc agaatagtag caacttggag
     9301 tttgctcgtt gataaagcct aaatgtagct gagcatggtc attcgctgac aagtttgctt
     9361 gcaggtttga gacattacga ccaacataaa gctgagcgta ttggtttagc tgcatattat
     9421 cagccttaaa ttgacgattt tgccaatcat cggcataaac tacatcttgc ttattgatcg
     9481 catcataagc gtgaggggtc ggtctgccgg aaagtagcac tttacctcct ttcacagtta
     9541 gatcgccgtt taagttcaaa ccaccagaga aggtataaat actattgagc ttttcttgct
     9601 ctattggtgc gtttttacgg gctaatactt tgttgatcgc ttgattgcga tctgcagcta
     9661 aaaattccca atgctcgctg cttaagccac cgcgaggaac aggttgtttt ggatcacctt
     9721 ttaatgcaaa gtattcccga attttcgttt tcggattggt gaacagataa atatctgcac
     9781 cagctactag ccccttaccc caagttactt cagaggcagt tgccggtggt gtagaggctt
     9841 ttggatcata caccacattc aaacgaccgt tatgctgggt gttatctgtt tcgccaataa
     9901 aaccattaaa gctattgtag cgatgctcca gacctttttg cgcgagtact tgttttactg
     9961 ctgcatcctt gttagaagac aggaaggtcc aatgggcatt acttgcgcca ttcgttggca
    10021 tatattggtt tggattgcct ttgagcgtaa agtaatcggt acggttatta gcatgtgggt
    10081 tgatatattc ataaatatca gcactgtttt ctttccacgt tccccatttt aagtccgttg
    10141 cttcaggggg cttcgggcca ttaatggtga gtgttgcagc tttttgtagg tgattattaa
    10201 caatacgcgc accatcatca ctattttgaa tacgattaaa cgcaatgttg ttgccgttga
    10261 gatctaaacg accaccacgg aagccaaagt aaatcttatt tggatcgact tgatcagcac
    10321 tgtttaatac aacggttgaa cggccgctca caataccaac ttggttaaat gcagattttt
    10381 tgccattttc acccgcttgt tgggtcaaaa tgacagtgcc ttgtccaaca ctaatgtcac
    10441 caaggttttc gcctttaccg ttaatatgta gtgtcccttc gcccaattta gataaacggt
    10501 caccttgtgg gtttttgact tgccaattaa cttgtttacc ttttgccact acaattccag
    10561 ctcctaccca gctttgatca ttttcagggc gaactgttgc attagcattg aaatttaatg
    10621 cgccagcacc ttggtcaata tcggttttta atacgatagt gctatcttgt ccttcaatgt
    10681 ttagggtttt tccggtgtta tcttgcggaa gttgtagctg aggtgtgcca ccatagccta
    10741 atggagaagc gctattgtct ttaattgaac gatcagcaag cgaaaccgtt aagtttttcc
    10801 ctttattacc aatgctactg tctttaccct gtgcagacca ttcaaaaacg gcattttgtt
    10861 gcgcattggt taatgtgccg gcaatatctt cggcaaattg tttatcgtga taatcctgac
    10921 ggataatacc ggcacggttg tagtagttgt ttgcaggcgt accaaaggtg taagtagcca
    10981 gtagtagcca gcgtttcgtt ttctgatcgt agccatacac acctgaaccg ctatcaccac
    11041 gagtaccaaa tgcagttaat gctccatatg ggctattgtt taatgcattt cctctaaaat
    11101 ctagccagta atcggaatta tgtaccgcga ttggtaaatg aactcccccg gttaaatatt
    11161 ggtaagatgt tgaaatttgg ttgtctttat gctcggtatt tttgactatt tgacgaccag
    11221 agcctaagcg agcaaagtga gtaaaacgac tactatcttg gtaggctgaa gcattattac
    11281 ccagatcagt cactgttgca ggtgcgacct cagtgactaa tttattgaga cgtggcactt
    11341 gataatcttg atgttgccca ccttcaacaa ttccatagtc gttacgatca acgactttgt
    11401 aagtgtagtg gtgtgcatcg gcattagtgc ctggggcgcc aaattccaca gtattgtatt
    11461 gtgtattatg ggcaacgctg actaaatatt gcggtgcaac tagagttgct atccctaagt
    11521 tacggtttgc agcactaaaa tctggcatcg gtacatttgg gaagagtgca tctaatgtat
    11581 tgccactttt atctttaatt tcaatattgc ttgcacctac ggtgaattta cccttattct
    11641 ccgcaaaatc acggtagtat tgaagatcga tatcatctct gaaaacagag gctgttgcag
    11701 ataaactaac agcaaatgcc acaaagctgg caaggtaaga aagtggaaag tttttattta
    11761 tcataaaatg ttaataaatt gctaatatta atggagtaaa aaggtggggt attctataga
    11821 taattattta tttggcaaga ggtcttacct gttttttata caaatttaca atcttaagat
    11881 aggcaaaagc agctacggaa tacgcagctg ctttgttgaa agttttattg agtgataagc
    11941 aggagcatta ttttgcaaat tcttgcataa attcgcccgc ttgtttgacc attgaggttg
    12001 aaccgacaaa gaacggtaca cgctggtgta gctctgttgg cttaatatct aaaatcggat
    12061 taataccatc tgtcgccatt cctccggctt gttcggcaag aaacgcaatc gggttgcatt
    12121 catagagtaa acgcaatttc ccttttggat atacggtgga ggttgggtaa atataaatac
    12181 cgccttttaa taaattgcgg tggaaatcgg acaccagcga gccgatatag cgtgaagagt
    12241 atggacgttt gatggcttca tcggtttctt ggcaatactt aataaagcgt ttcacacctt
    12301 gtgggaaagt aacatactgc ccttcattga tggagtaata ttttccttcg gtaggggttt
    12361 ttagatcagg gtgtgaaaga ataaataagc ctaatgacgg atcataggta aaaccgttca
    12421 cgccattgcc tgtggtgtaa accagcatgg ttgaagaacc ataagtaaca taaccggcgg
    12481 caacttgttt acgcccttcc tgcaagaaat cttcttgtgt tactggggtg ccgatagggg
    12541 agacacggcg gtaaatagag aagattgttc ccacagaaac attcacttca atattggagg
    12601 agccatcaag cggatcggtc attaaaatat attttgcatt tctcccacgc tcattatcaa
    12661 aggcaacaaa attatcatct tcttccgatg caaagccggc aacatcttca cgtgcaagta
    12721 acgctttttt catcgtttcg ttggcgaata catcaagttt catttgggct tcaccctgta
    12781 cattttcaga acctgcagta cctaaaatat cttgacttaa accggcacgg ttgatttctc
    12841 gatgaataat tttagcggct aaacgaatag aagataaaat cccacttaat tccccttttg
    12901 cccctgggta ttctgcttgt ttttcaataa taaattcgcc gagtgttttc atttttttct
    12961 ccttcgctat gttagaatgc ccttattata acgattacct ttaaagaggt agcggtttaa
    13021 gctttaattc tgtgatccac ttcacatttt atctttcaag atgaggagca atacgatgaa
    13081 taatctacga atcaaaatga tcagccctga aatagcatta gcaaaatata atgaattgga
    13141 tgttttagag attaatcact ccaaagtgaa ggctaaaatt gcattgcaag gtgcgcagtt
    13201 actgagttgg caacctaaaa atactcagca agatgtatta tggttaagtg aaattgaacc
    13261 tttccaaaca ggtgtggcga ttcgtggcgg cattccgatt tgccaccctt ggtttggtac
    13321 agacaaaaag cctgctcacg gcacagcccg tattcaagcg tggaatttgc tggaacatac
    13381 ttcctcagca gatgggattc gtgttgtttt ggggttagaa aatcaggcaa aactcgagat
    13441 gatactaggc gaagtctgtg agttgtattt tactcactta gcaccggagc cggcacaggc
    13501 tgcattgcat acttattttc aggtcggtga tattacgaaa acggaagtac aaggcttagc
    13561 aacacaatgt tttgataaat tgacaaatca agaaattgaa gtgccatcac ctcgcaagat
    13621 aagtgaaaat gtggattgta tttatccggc acaagcggtg aattttattc aagattttgc
    13681 aaatcagcgc accattaaag ttgagcatat taatgctacc gaaaccgtac tttggaatcc
    13741 ttggcataat accgttagtg cgatgacaga aacggcgtat caaaatatgg tatgtgtgga
    13801 aacagcacgg ataaatacct tacttcaaca aaatgaaacg ctaggagtga gaattttggt
    13861 gcgataatgt ttaatgagag caagcagctg aattagtaat attttttaca aatttaaccg
    13921 cttgtctctt gtatttacac tagatcaaac agtaaaaatt ccacgtcatc ttgagtgttt
    13981 atttcaagtg ctttctcttg acgaatgcct aaggcatcgc tggtggaaag ttcaacgcca
    14041 ttgatgttta gattcccttt caccacttgt agccagtaac tgcggtttgg ctctaatgcc
    14101 agttgctctg atttggctgt tgggtattga taacgccaca gcttcatatc ttggtaaatt
    14161 ttaaatgaac cttcttctgc gtttggcgaa agaatcaagg ttgctccctc tttcggggca
    14221 aatctatctt ggttgtagcg aggggtcaca tctttttggt ttgggataat ccaaatctgg
    14281 taaaggtgta aggtttcatt cggatctgga ttaatttctg aatggaaaac cccggttccg
    14341 gcagacataa tttgaaattc gccagctttt acttcggttt tattacccat actgtcttcg
    14401 tgagccacac gtccttttaa catataagtt aaaatttcca tattatcgtg cgggtgcttg
    14461 ccaaaaccgt gattaggtgc aatgaaatct tcgttaatta cccgtaaatg tgaaaaatgg
    14521 atatgtttta ggtcgtaata attggcaaag gaaaaagtgt ggtagctttt aagccagcta
    14581 aaagaaccat cgcctcgttc attggctttt ctcagttgta acattatcta
//
LOCUS       DANLRW010000064        14606 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.064, whole genome shotgun sequence.
ACCESSION   DANLRW010000064 DANLRW010000000
VERSION     DANLRW010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14606
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.064"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            42..314
                     /locus_tag="PXA71_001615"
     CDS             42..314
                     /locus_tag="PXA71_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005709555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HDL5105715.1"
                     /translation="MKKGIHPENYREVLFYDASVQQGWVIRSCAATNKTMVWEDGKEY
                     PLYTLDTSSASHPVYTGKRREVNTEGRASQFKDRFKGFASTLSNQK"
     gene            323..448
                     /gene="ykgO"
                     /locus_tag="PXA71_001616"
     CDS             323..448
                     /gene="ykgO"
                     /locus_tag="PXA71_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002222621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L36"
                     /protein_id="HDL5105716.1"
                     /translation="MKILNSLKTAKSRHPDCQIVRRKGKLYVICKTNPRFKARQR"
     gene            628..1401
                     /locus_tag="PXA71_001617"
     CDS             628..1401
                     /locus_tag="PXA71_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5105717.1"
                     /translation="MLKKLSIAALALTLSVSAFAKESLLERINNKGTITVGTEGTYAP
                     YTYHDASGKLTGYDVEVTRAVAEKLDVKVEFKETQWDAMLAGLKGERFDLVANQVALT
                     SPERRATFDKSESYSWDGAALLVREDETKIKTPADVKGVKTAQTLSSNYGEIARENGA
                     DIVPIDGMAQGLLLIQQKRADATFNSHLSLLDYLKKNPNSGLKIVWEKEEKVGAGLIA
                     NKGNDEALAKISKAIVELREDGTLKKLGEQFFGKDISVQ"
     gene            1484..2200
                     /locus_tag="PXA71_001618"
     CDS             1484..2200
                     /locus_tag="PXA71_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDL5105718.1"
                     /translation="MLNDLLLSIPFMTQARVDLVLSGFWPMVQAAFLVSIPLAIASFI
                     IGMLIAVAVALVRISPATGFFHRLLLWLVKGYISIIRGTPMLVQICIVFYGLPAIGIF
                     IDPIPAAIIGFSLNIGAYGSETIRAAISSVPKGQWEAGYTIGMTYMQTFRRIIAPQAF
                     RVAVPPLSNTFIGLFKDTSLASVVTVTEMFRVAQQVANMSYDFLPVYIEAGLIYWCFC
                     WVLFLIQARLEVRFNRFVAK"
     gene            2210..2962
                     /locus_tag="PXA71_001619"
     CDS             2210..2962
                     /locus_tag="PXA71_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDL5105719.1"
                     /translation="MLKIRNIHKTFGNNAILRGIDLDIQKGQVVVILGPSGSGKTTFL
                     RCLNALEMPEQGTLEFSGNAPLKIDFAVKQSKKEILALRRKSGMVFQNYNLFPHKTAL
                     ENVMEGPVFVQQQAVEIAQKNAKALLEKVGLADKAELYPFQLSGGQQQRVGIARALAI
                     QPELMLFDEPTSALDPELVQDVLNTMKELANEGWTMVVVTHEIKFALDVADVVVVMDG
                     GEIVEQGSPQQLFNHPQHERTKRFLNQIRADK"
     gene            complement(3178..3711)
                     /locus_tag="PXA71_001620"
     CDS             complement(3178..3711)
                     /locus_tag="PXA71_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDL5105720.1"
                     /translation="MEFLAPVISLIVGFLSFVLVLRTWLQFCRVDPRLPISQTLLKIT
                     EPMVSPVGKLIPTVKNICFPALLIAAALVTLQFILFGVDLPRAVLIGLLSVVKTFGQI
                     LFFTTLIRALMSWVTQGNHPLDYTVAQITEPVLGFIRKLLPRTGMLDFSVMVLGFGLL
                     LLNSLFYQIFGGLWAAA"
     gene            complement(3817..4158)
                     /locus_tag="PXA71_001621"
     CDS             complement(3817..4158)
                     /locus_tag="PXA71_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggL family protein"
                     /protein_id="HDL5105721.1"
                     /translation="MAIQRNARQRKKMHLGEYQELGFLIKFTFAEGTGIDQIDETVDR
                     FIDEVIRPNGLALEANGYLNWEGLVCLEKLGKCDESHRQLVKTWLETNGLKEVQVSEL
                     FDIWWDYPAQA"
     gene            complement(4182..4931)
                     /gene="trmB"
                     /locus_tag="PXA71_001622"
     CDS             complement(4182..4931)
                     /gene="trmB"
                     /locus_tag="PXA71_001622"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDL5105722.1"
                     /translation="MSEKQTFADKKRKTVEQAEFTEDGRYLRKVRSFVLRTGRLSDYQ
                     RDMMNNNWANLGLDYQPMPFNFEQIFGNNNPVVLEIGFGMGKSLVEMAEQNPNRNYIG
                     IEVHTPGVGACIAYALEKGVKNLRVICHDATEILRDSIADGTLGGLQLYFPDPWQKAK
                     HHKRRIVQPEFISRVIRKLSPNGFIHFATDWENYAEHMLEVLRQFESELQNTSATNDF
                     IPRPNFRPLTKFEERGHRLGHGVWDLYFTKK"
     gene            complement(4941..5891)
                     /locus_tag="PXA71_001623"
     CDS             complement(4941..5891)
                     /locus_tag="PXA71_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000288132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDL5105723.1"
                     /translation="MNSRILATGSYLPTKVRTNADLEKMVDTSDEWIVTRSGIRERRI
                     AEPDETVATMGAKAAQQALEMAGIEANDIDLIVVGTTTNSHAYPSAACQIQGLLQIED
                     AIAFDVAAACTGFVYALTVADQFVRNGQVKKALVIGSDINSRMLDETDRSTVVLFGDG
                     AGAVILEASEELGIISTHLHASPDLENNLTLRSQKRGEERSGFIEMQGNATFKIAVNQ
                     LSSVVEETLEANNLQKSDLDWLIPHQANLRIITATAKKLEMEMDQVVVTLDKYANTSG
                     ATVPVALDEAVRDGRIQRGQLLLLEAFGGGWTWGSVLVKF"
     gene            complement(6037..7056)
                     /gene="hemB"
                     /locus_tag="PXA71_001624"
     CDS             complement(6037..7056)
                     /gene="hemB"
                     /locus_tag="PXA71_001624"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDL5105724.1"
                     /translation="MQVIQSQYPLRRMRRLRKHDFSRRLVAENQLTVNDLIYPVFVIE
                     GENQRVQVPSMPGVERLTIDQLLVEAAELVKYGVPAVALFPVVGDVKKSLMAEEAYNP
                     QGLAQRAVRALKAQFPELGVITDVALDPFTTHGQDGIIDETGYVLNDVTTEVLVKQAL
                     SHAEAGADIVAPSDMMDGRIGKIREALEQNGFINTQIMAYSAKYASNYYGPFRDAVGS
                     AGNLKGGNKYTYQVDPANGNEGLHEVAMDIQEGADMVMVKPGMPYLDMVWRVKENFGV
                     PTFAYQVSGEYAMHMAAIQNGWLKERECIMEGLLCFKRAGADGILTYFAKRVAKWLYE
                     EAQAK"
     gene            complement(7137..7892)
                     /gene="tatC"
                     /locus_tag="PXA71_001625"
     CDS             complement(7137..7892)
                     /gene="tatC"
                     /locus_tag="PXA71_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDL5105725.1"
                     /translation="MSQVDESQPLITHLIELRNRLLRSFICVLLVFCGLVYWANDIYT
                     LLATPLTDNLPDGATMIATNVATPFFTPIKLTIVVSVFLSVPFILYQIWAFVAPALYK
                     QEKRLVYPLLVSSTLLFYCGVAFAYYVVFPLVFGFLTSTAPEGVTMATDISSYLDFVL
                     TIFMAFGICFEVPVAIILLCWAGVTTPEDLKAKRPYIIVAAFVIGMLLTPPDIFSQTL
                     LAIPMCLLFEVGVLFARFYRPKDDDEPSEQVAQ"
     gene            complement(7879..8523)
                     /gene="tatB"
                     /locus_tag="PXA71_001626"
     CDS             complement(7879..8523)
                     /gene="tatB"
                     /locus_tag="PXA71_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HDL5105726.1"
                     /translation="MFDIGFSELVLIMIVGLVVLGPKRMPIAIRTVMGWVSTIRGLAA
                     NVQNELAQELKLQELKESIKKAEELNLSSLSPELNKTVEDLKMSATQLQDSLNSAKNE
                     LEKTAAESSTIPKLTDEQVAEIQQKIEQESQVLEAQELQKNAQNKPLEVDSLSEQLNV
                     TRTEKPLSADELAEQAEMDESLLTLESYYPPDDDLATPQSSESAQKSEANNVAS"
     gene            complement(8527..8748)
                     /gene="tatA"
                     /locus_tag="PXA71_001627"
     CDS             complement(8527..8748)
                     /gene="tatA"
                     /locus_tag="PXA71_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HDL5105727.1"
                     /translation="MGGISIWQLLIVVAIIVLLFGTKKLRTLGSDLGESVKGFKKAMA
                     DEKKDAEFEKVEAKDAISAEQKAKEKEQA"
     gene            complement(8859..10496)
                     /gene="ubiB"
                     /locus_tag="PXA71_001628"
     CDS             complement(8859..10496)
                     /gene="ubiB"
                     /locus_tag="PXA71_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HDL5105728.1"
                     /translation="MNIKNLNRFYHIIRTFLRYGIDEAIPNLPITRKIKLGRKALFWV
                     KNQHSDKPYGVRLRLALQELGPVWIKLGQMLATRRDLFAPELADQLALLQDNVEPFDG
                     KIARQIIEQALGGKLETWFENFDETALASASIAQVHTAKFNQNQPLAGKDVVLKVIRP
                     GIEPVIKADLELMYEIAHFIPKLSNDGKRLRAVEVVREYEKTILDELDLRKEMHNAIR
                     LRANFENSEMLYVPEMYQDFCHKNLIAMERIYGIPVSNIAELEANSTDMKLLAERGVQ
                     VFFTQVFRDSFFHADMHAGNIFVNREHPENPQYIGIDCGIVGTLNHNDKRYLAESFVA
                     FFNRDYRRVALMHVESGWTPPDTDIDKFEQAFREVCEPIFAKPLSEISFGHVLLNLFN
                     VAREFNMEVQPQLVLLQKTLLYIEGLGRQVYPQLDLWQTAKPFLQNWLNEQVGVKAMV
                     RDIKQRLPQYREHFAEFPEALFKALQEQKQINFRLAEINESLKAQNSNANSRFLVLSI
                     SAIVICGAFWKFESLPIWLSVPLLTLFPLVLILSQRK"
     gene            complement(10570..11547)
                     /locus_tag="PXA71_001629"
     CDS             complement(10570..11547)
                     /locus_tag="PXA71_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HDL5105729.1"
                     /translation="MKQIIAQARENAVRAVDFQRVLMYWHIGKRIFEQEQQGQERADY
                     GTYLIKMLAKELEPEFGSGFCSRQLERYRQFYRAFPIATALRSQLNWTQYRRLIQISD
                     SDKREFYLAESCKNNWSSRQLERQINSSLYERLLLSNDKESVLAVARNEQQPVDPKQL
                     IKDPMVLEFLGLKRESAYYEKDLEQAIITHLQDFLLELGNGFSFIARQKRLHLDGDDF
                     FVDLVCYNRLLQCFVIFEIKTHKLTHQDLGQLQMYVNYFDRVEKLPHENATIGVLLCA
                     DKNDAVVKFSLPENQNKIFASQYQLYLPSEQTLIAEVQKEIENFEQKYP"
     gene            complement(11708..12355)
                     /locus_tag="PXA71_001630"
     CDS             complement(11708..12355)
                     /locus_tag="PXA71_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 sterol-binding domain-containing protein"
                     /protein_id="HDL5105730.1"
                     /translation="MLNNVKQQLMLPQFTFGLIETAFNALLKRSPHIEPNLRKLSGKV
                     LKIALTSPKIDFFVLFSESRTDWLGNYEGEADCTVQLAFDTLPKLADKQKLTELINNK
                     SLVLTGDIQVLQHFTALLEQLEKDPAELLSPFVGDVVAQTSTDLAKKLLGKVKAQFEQ
                     NNQHLVENLIQERPVLVHRLQAVHFYDQVEELAQQALKLEQKFTHYVRSSSHQQS"
     gene            complement(12546..13298)
                     /gene="ubiE"
                     /locus_tag="PXA71_001631"
     CDS             complement(12546..13298)
                     /gene="ubiE"
                     /locus_tag="PXA71_001631"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HDL5105731.1"
                     /translation="MQQSAETTHFGFKTVAKEEKQQLVANVFHSVAGKYDLMNDLLSF
                     GIHRVWKRFTIDCSGVRKGQKVLDLAGGTGDFTAKFSRIVGESGEVILADINSSMLEV
                     GREKLRNLGVVGNVSYVQANAECLPFADNTFDCIVISFGLRNVTDKDKALRSMFRVLK
                     PGGRLLVLEFSKPIIDPISQLYNFYSFNILPKVGEVVVNDAESYRYLAESIRMHPKQD
                     ELKAMMEQTGFESVNYYNLSAGIVALHRGYKF"
     gene            13643..14596
                     /gene="corA"
                     /locus_tag="PXA71_001632"
     CDS             13643..14596
                     /gene="corA"
                     /locus_tag="PXA71_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HDL5105732.1"
                     /translation="MIRAFGLDNACLISVDETNPTLLNDAIWIDLIDPSEAERTVLEN
                     RLDQTLAEERELEDLEASARFFEDEDGLHLHSFFYCLDDDDYADIATVAFTIRDGRLF
                     TLRDRDLPAFRLYRMRSRREKLIDSNAYELLLDLFETKIEQLADVIEEVYADLEKLSR
                     VILNGQQENENFNDALSRLTEFEDASSKVRLCLMDTQRALSFLLRKTRLPNNQLEQAR
                     DIMRDIESLQPHNESLFQKVNFLMQAAMGYINIEQNRIMKFFSVVSVMFLPATLVAST
                     YGMNFEFMPELHFQYGYPMAIGLMIVAASAPYLYFKRKGWL"
BASE COUNT         4163 a         3262 c         2856 g         4325 t
ORIGIN      
        1 ttaattatgg ttaatgacct tatctaaatt ctggagaaaa tatgaaaaaa gggattcatc
       61 ctgaaaatta tcgtgaagtg ttgttctatg atgcctcagt gcaacaaggc tgggttatcc
      121 gttcttgtgc ggcaaccaac aaaacaatgg tatgggaaga tggcaaagaa tacccacttt
      181 acaccttaga tacctcatcg gcgtctcacc ctgtttacac aggtaaacgc cgtgaagtga
      241 atacagaagg tcgtgcaagt caatttaaag atagatttaa aggctttgct tcaacgcttt
      301 caaatcaaaa atagaggata aaatgaaaat cttaaactca cttaaaaccg caaaatcacg
      361 ccacccggat tgccaaattg tcagacgcaa aggcaaactt tatgtgattt gcaaaaccaa
      421 cccgagattt aaagctcgtc agcgttaaaa accagcacct taataagcta atttattaag
      481 gtgtttttta tttcatcttc tcaatattac ctattttaac cacatcaacg attttattat
      541 ttcttattcc atttagttat ttgcaagcgg tcaattttcc ccttaaattt gcaaaaaatt
      601 tattttacca attaaaagga aatgattatg ttgaaaaaat tatcaattgc tgcattagct
      661 cttacccttt ctgtttctgc atttgctaaa gagagcctac ttgagcgtat aaacaacaaa
      721 gggactatta ctgtgggtac ggaaggaact tatgcccctt acacctatca cgatgcgagc
      781 ggtaaattaa ccggttacga tgtagaagta acccgtgcgg tggctgaaaa attagacgta
      841 aaagtggaat ttaaagagac acaatgggac gctatgttag ccggtttaaa aggtgagcgt
      901 tttgacttag tggcaaacca agtggcttta accagcccgg aacgtcgagc gacatttgat
      961 aaatccgaat cttacagctg ggacggtgcc gccttattag tgcgtgaaga tgaaactaaa
     1021 atcaaaaccc ctgctgatgt aaaaggcgtg aaaactgccc aaaccttgag ctcaaactat
     1081 ggcgagattg cccgtgaaaa cggtgcagac atcgtgccaa ttgacggtat ggctcaaggc
     1141 ttactgttaa ttcaacaaaa acgcgccgat gcaactttca atagccactt atcgctatta
     1201 gattacttga aaaagaaccc gaattccggc ttaaaaattg tgtgggaaaa agaagaaaaa
     1261 gtgggtgcag gcttaattgc gaataaaggc aatgacgaag cattagcgaa aatcagcaaa
     1321 gcaatcgtag aattacgtga agacggcacg ttaaaaaaat tgggcgagca gttcttcggt
     1381 aaagatatta gtgtacaata atccatattg gattaggctt ggggcgaatt cgcccctttt
     1441 atttttaaat ctccctcaaa acgggagatt ttaggttttt cagatgttaa acgatctact
     1501 tctctcaatc ccctttatga cccaagctcg ggtcgattta gtgctaagcg gtttttggcc
     1561 gatggtacaa gcggcatttt tagtctctat tccgctggca atcgcctcat ttattatcgg
     1621 tatgttaatt gccgttgcag ttgcattagt gcgaattagc cctgcaacag gcttttttca
     1681 ccgcttgcta ctgtggctgg taaaaggtta tatctcgatt attcgcggca cgccgatgtt
     1741 ggttcagatc tgtattgtgt tttatggttt gcctgcaatc ggcattttta tcgatccgat
     1801 tccggcggca attatcgggt tttcactcaa tatcggggct tatggctcgg aaacgatccg
     1861 tgctgcgatc tcctccgtgc caaaaggaca atgggaagcc ggttatacta tcggtatgac
     1921 ttatatgcaa acttttcgcc gtatcattgc cccgcaagcg tttcgagttg ctgttccgcc
     1981 acttagcaac acctttatcg gtctgtttaa agatacctct cttgcctccg ttgttaccgt
     2041 aaccgaaatg ttccgggttg ctcaacaggt agcaaatatg tcttatgact tcctacctgt
     2101 ttatattgaa gccggtttga tttattggtg cttctgctgg gtgctatttt taattcaggc
     2161 gagattggaa gtccgcttta accgatttgt ggcgaaataa ggaggaattg tgcttaaaat
     2221 tcgcaatatt cataaaacct ttggcaacaa cgctattcta cgcggcattg atttagatat
     2281 tcaaaaaggg caagtggtag taattttagg cccttccggt tcaggcaaaa ccacctttct
     2341 tcgttgctta aatgcactgg aaatgcccga gcaaggcaca ttggaattta gtggtaatgc
     2401 tccgctgaaa attgattttg ccgtaaaaca gagcaaaaaa gagattttag cgctacgccg
     2461 caaatccggt atggtgttcc aaaactacaa cctgttcccg cataaaaccg cattggaaaa
     2521 tgtgatggaa ggaccggtat ttgtgcaaca acaagcggtc gaaattgctc aaaaaaatgc
     2581 aaaagccctg ttagaaaaag tcggactggc ggataaagca gaactctacc cgtttcaact
     2641 gtcaggcggg caacagcaac gggttggcat tgcacgagca ttagcaattc agccggagct
     2701 gatgttattt gatgaaccaa cttcggcact tgatcctgag ttagtgcaag acgtgctaaa
     2761 tacgatgaaa gaactggcaa atgaaggctg gacaatggtc gtggttactc acgaaatcaa
     2821 atttgccctt gatgttgccg atgtagtggt ggtaatggac ggcggtgaaa tcgttgaaca
     2881 aggctcgcca cagcaactgt ttaaccaccc acaacacgaa cgaactaaac gttttttaaa
     2941 tcaaatcaga gcggataaat aagaaacgat agcgctagcg tccacgctag tgctatctaa
     3001 taaatggtac aagcggttaa ttatgtataa attgttatac tgttttggca cgagcgtgga
     3061 cgctcgcgcc atcgtacagt aaaatcagct aacaaggttc cccataaagg ataaataaga
     3121 caaggctcct taatctttta gattaaggag cttattttta gattttagaa atccgattta
     3181 agccgcagcc catagtccac caaaaatttg gtagaacaag ctatttagta gcaataagcc
     3241 gaaacctagc accattaccg agaaatctaa cattcccgtt cttggcagga gcttgcggat
     3301 aaaacctaac accggttcgg taatttgtgc taccgtgtag tctaatgggt ggttgccttg
     3361 agtgacccag ctcattaatg cacgaatcaa ggtggtgaaa aatagaattt gtccgaaggt
     3421 tttgaccaca cttaataagc cgattaatac tgctctgggt aaatctacgc caaacagaat
     3481 aaactgtaac gttaccaaag cggcggcaat taatagtgcc ggaaagcaaa tatttttaac
     3541 ggttggaatc agcttgccaa ccggtgaaac catcggttcg gtaattttaa gtaaggtttg
     3601 tgaaatcggt aaacgaggat caacccgaca aaattgcagc caagttctta gcaccagcac
     3661 aaaacttaaa aagccaacaa taagcgaaat aacaggagct aaaaattcca tctctttttc
     3721 tctttctata caaaacaagc ggtcgttttt tagaaaaaat ttgcaaattt tcagtaaaat
     3781 ctgaccgctt gtatcttatt aaattaacta ggcaaattaa gcttgtgctg ggtagtccca
     3841 ccaaatatca aataattcgc tcacttgaac ctcttttaag ccgttagttt ctaaccaagt
     3901 tttcactaat tggcggtgag attcatcaca tttgcctaat ttttctaagc agactaaacc
     3961 ttcccagttt aagtagccgt tcgcttcaag ggctaaaccg tttggtcgaa tcacttcatc
     4021 gataaaacga tctacggttt catcaatttg gtcaatgcct gtgccttcag caaaggtgaa
     4081 tttaattaag aaacctaatt cttggtattc acctaagtgc atttttttac gttggcgtgc
     4141 gttacgttga atagccattt tttctctcct ctatgaataa atcatttctt tgtaaaatat
     4201 aaatcccaca ccccgtgtcc taaacgatgc cctcgctctt caaatttggt tagcgggcgg
     4261 aaattcggac gtggaataaa atcattagtt gctgatgtat tttgcaactc gctctcaaat
     4321 tggcgtaata cttcaagcat atgttctgcg taattttccc agtcggtggc aaaatgaata
     4381 aagccgttag ggcttaattt tctgatcaca cggctgataa attcaggctg cacaatacgg
     4441 cgtttgtggt gttttgcttt ttgccaaggg tctgggaagt aaagctgtaa gccacctaat
     4501 gtaccgtcag caatgctgtc tcgcaaaatt tcggtggcat cgtggcaaat tactcttaaa
     4561 ttcttcacgc ctttttctaa cgcataagcg atacaagccc ccaccccggg cgtgtgcacc
     4621 tcaatgccga tatagttgcg attcgggttt tgctctgcca tttccaccag cgattttccc
     4681 attccgaagc cgatttctaa cactaccggg ttgttattgc cgaaaatctg ctcaaaatta
     4741 aagggcattg gctggtaatc taagcctaaa tttgcccagt tgttgttcat catatcacgt
     4801 tgataatcgc tcaaacgacc ggtacgcaat acaaaactcc gcacttttcg taaataacgc
     4861 ccatcttcgg taaactcggc ttgctcaacg gttttacgtt ttttatctgc aaaagtctgt
     4921 ttttctgaca ttttcttgcc ttaaaacttc actaataccg aaccccaagt ccagccaccg
     4981 ccgaatgctt caaggagtag taattgccca cgttgaattc gcccgtcacg caccgcttca
     5041 tctaatgcca ccggcactgt tgctccactg gtattggcat atttatcaag ggtaaccacc
     5101 acttgatcca tttccatctc taattttttc gccgttgcgg tgataatgcg taaattcgct
     5161 tggtgcggaa tcagccaatc taaatcggat ttttgtagat tattcgcttc taaggtttct
     5221 tctaccacgc ttgaaagttg gtttactgca attttaaagg tggcattgcc ctgcatttca
     5281 ataaagccgg aacgctcttc gccacgcttt tggcttctta aggttaagtt attttctaaa
     5341 tccggtgagg cgtgcaagtg ggttgaaata atacccagct cttcactcgc ctctaaaatc
     5401 accgccccag ctccgtcacc aaataatact actgtgctgc ggtcggtttc gtctaacatt
     5461 ctggaattga tgtctgaacc aataaccaat gcctttttca cttgcccgtt acgcacgaat
     5521 tgatcggcaa cagttaaagc atacacaaat cctgtacaag ccgctgccac atcaaaagca
     5581 atcgcgtctt caatctgaag caagccttga atttggcaag ctgcacttgg gtaagcgtgg
     5641 gagttggtag ttgttcccac cacaattaaa tcaatgtcat ttgcctcaat tcctgccatt
     5701 tccagtgctt gttgagcggc ttttgccccc attgttgcca ctgtttcgtc aggctcggca
     5761 atacggcgtt cacgaatgcc ggaacgggtt acgatccatt catcagaggt atcgaccatt
     5821 ttttctaaat cagcattggt acgcaccttt gtcggtaaat agcttcccgt tgctaaaatt
     5881 ctactattca tatttttatt attctcaatc aattaaatga taatccgtta ttatagcttg
     5941 aaaaccaaca aatatatagg ctttacaagc ggtcattttt agcaaaaaag ttgcattcac
     6001 gaacgatttt gcactagaac caccgcttgc tagtatttat ttcgcttgag cctcttcgta
     6061 tagccacttc gctactcgct tggcgaaata agttagaata ccgtctgctc ctgcccgttt
     6121 aaagcagagt aatccctcca taatgcactc acgctctttc agccagccgt tttggattgc
     6181 cgccatatgc atcgcgtatt cgcccgaaac ttggtaggcg aaggttggca cgccaaaatt
     6241 ctctttcaca cgccacacca tatccaaata aggcataccc ggtttcacca tcaccatatc
     6301 tgccccttct tgaatatcca tcgccacttc gtgcaagcct tcgttgccgt tagccggatc
     6361 gacttggtaa gtgtatttat taccgccttt taagttgccg gcagaaccta ctgcatcacg
     6421 gaacggtccg taataattag acgcatattt agccgaatac gccataattt gcgtattgat
     6481 aaaaccgttt tgctcaaggg cttcacgaat tttgccgatt cgaccgtcca tcatatcgct
     6541 cggggcaaca atatccgccc ccgcttctgc gtgcgataac gcctgtttta ccaatacttc
     6601 agtagtcaca tcattcagta catagcctgt ttcatcaata atgccgtctt gtccgtgcgt
     6661 ggtaaacggg tctaacgcca catcagtaat cacgcctaat tccggaaatt gagcttttaa
     6721 agctcgcacg gcacgctgtg ccaacccttg cgggttatag gcctcttctg ccatcagtga
     6781 ttttttcaca tcacccacca cagggaaaag agccaccgca ggcacgccat atttaaccag
     6841 ttctgcggct tcaactaaaa gctggtcgat agttaaacgc tctacacccg gcatagaagg
     6901 cacttgtact cgctgatttt ccccttcgat gacaaaaaca gggtaaatca aatcattaac
     6961 ggtaagttga ttttctgcca ctaagcggcg gctgaaatcg tgcttgcgta aacgacgcat
     7021 acggcgtaaa ggatattggg attgaattac ttgcattttt aatttcctaa ttcttaaaat
     7081 acctattctt gaaataagaa aggcatagca aacaggtgct atgccttttc aaaatattac
     7141 tgtgcaacct gctctgatgg ttcatcatca tctttggggc gataaaaccg agcaaatagc
     7201 acaccaactt caaacaataa acacattgga attgccaata atgtttgcga gaaaatatct
     7261 ggtggggtga gcaacatacc aattacaaat gctgccacaa taatataagg gcgttttgcc
     7321 tttaaatctt cgggtgtggt tacgcctgcc caacataaca agataatcgc aaccggcact
     7381 tcaaagcaga tcccgaatgc cataaaaatg gttaaaacga aatcaagata gctactaata
     7441 tccgttgcca ttgttacccc ttccggagcg gtagaggtta aaaagccaaa tacaagcgga
     7501 aatacaacat aataggcaaa agcgacacca caataaaaca gcaatgtgct agataccaat
     7561 aatgggtaaa ccaaacgctt ttcctgcttg tataaagcag gggcgacaaa cgcccaaatt
     7621 tggtacaaaa taaaaggaac tgataaaaac accgaaacca caatggttaa tttaattggg
     7681 gtaaaaaacg gagtggctac attggttgca atcattgttg caccgtctgg taaattgtcc
     7741 gttaaaggtg ttgccaataa ggtgtaaata tcattggccc agtaaaccaa tccgcaaaac
     7801 accaagagca cacagataaa actacgcagt aatcggtttc tcagctcaat taaatgtgta
     7861 atcagaggtt gagactcatc aacttgcgac attatttgcc tccgatttct gcgctgattc
     7921 tgatgattga ggcgtagcta aatcatcatc tggcggatag taagattcca acgttaaaag
     7981 cgattcgtcc atttctgctt gttcagccag ctcatcagcc gaaagtggct tttctgtccg
     8041 cgtaacatta agttgctcag ataaactatc cacttcaagc ggtttatttt gcgcattttt
     8101 ttgcaattct tgcgcctcta acacctggct ttcttgctcg attttttgct gaatttctgc
     8161 gacttgctca tcggttaatt taggaattgt gctgctttcc gcagccgttt tttccaactc
     8221 attttttgca gaattaagcg aatcttgcaa ctgggtggct gacattttca gatcttccac
     8281 cgttttattt aattctggcg aaagggagct taaattcaac tcttctgcct ttttaatgct
     8341 ctcttttaat tcttgcagtt tcagctcttg agccagttca ttttgtacgt ttgcggctaa
     8401 acctcgaatt gtactcaccc agcccattac ggtacgaatc gcaatcggca tacgtttcgg
     8461 gcctagcacc accaagccca caatcataat cagtactaat tcagaaaaac ctatatcaaa
     8521 cacggattaa gcctgctctt tctcttttgc tttctgctct gctgaaattg catcttttgc
     8581 ttccactttt tcaaattcag catctttttt ctcatctgcc attgcttttt tgaagccttt
     8641 tacagattcg cccaaatccg aacctaaagt acgtaatttc ttcgtaccga aaagtaatac
     8701 gatgattgca accacaatca gaagctgcca aatactaata ccgcccataa aaactccttt
     8761 catttaatag ggaatagata aaataaaacg ctgtttatta tatgttactt tgacatataa
     8821 aaaagtaatt ttgcaaaaaa tttgtcaaaa acaaccgctt atttgcgttg actcaaaatc
     8881 aataccagtg gaaataaagt taataacggc acacttagcc atatcggcaa agattcaaat
     8941 ttccaaaatg cgccacagat cacaatcgct gaaattgaca gcacaagaaa acggctattt
     9001 gcgtttgaat tctgtgcttt taaactttcg ttaatttccg ctaaacggaa attaatttgc
     9061 ttttgctctt gtaaggcttt aaacaatgcc tccggaaact ccgcaaaatg ctcccgatat
     9121 tgcggtaaac gttgcttaat gtctcgaacc atcgctttca cacctacctg ctcattcagc
     9181 cagttttgta aaaacggttt tgcggtttgc cataaatcca actgtggata aacctgcctg
     9241 cccaaacctt caatataaag aagtgttttt tgcaacaaca ccaactgcgg ctgcacttcc
     9301 atattaaatt ctcttgccac attaaacagg ttgagcaaaa cgtgtccgaa tgaaatttcc
     9361 gataacggct tagcaaaaat cggctcacat acctcacgaa aggcttgctc aaatttatca
     9421 atatcggtat ccggcggcgt ccagcccgat tccacgtgca ttaaggcaac acggcggtaa
     9481 tctcggttga aaaatgcgac aaaactttcg gctaaatagc gtttgtcatt gtggttcaac
     9541 gtgccgacaa tcccgcagtc aatgccgata tattgcggat tttccgggtg ttctctgttc
     9601 acaaaaatat tgccggcgtg catatcggcg tggaaaaaac tgtcacggaa tacttgggta
     9661 aaaaatacct gcacaccacg ctctgccagc aatttcatat cggtgctgtt cgcttccaac
     9721 tcggcaatgt tagacactgg aatgccataa atccgctcca tcgcaatcaa gtttttatgg
     9781 caaaaatctt gatacatttc aggcacatac agcatttcgc tattttcaaa attcgcccga
     9841 agccgaatgg cattgtgcat ttctttgcgt aaatccagct cgtctaaaat agttttttcg
     9901 tactctcgca ccacttcaac cgcccgtagc cgtttgccgt cattcgataa tttcgggata
     9961 aagtgagcaa tttcatacat caactctaaa tccgccttaa tcaccggctc aatgcccggg
    10021 cgaatcactt ttaacaccac atctttgcct gcaagcggtt gattttggtt aaattttgcc
    10081 gtgtgaacct gtgcaatcga agcagaagct aaggcagttt catcaaagtt ttcaaaccaa
    10141 gtttcaagct ttccgcccaa agcctgctcg ataatttgac gagcgatttt gccgtcaaac
    10201 ggttcaacat tatcttgtag caaggcgagc tggtcggcaa gctccggtgc aaacagatca
    10261 cgtctggtag ctaacatttg cccgagcttg atccaaaccg gtccaagctc ttgcaaagcc
    10321 aaacgtaaac gtacaccgta aggtttgtct gaatgttgat tcttcaccca aaacaaagcc
    10381 ttacgcccta gctttatttt gcgggtaatt ggcagattcg gaatggcttc atcaatacca
    10441 tagcgaagaa aagtgcggat aatatggtaa aagcggttga gatttttgat gttcattgaa
    10501 atatatattt aatggtaatt aggaagattt tagcaaaatt ctgtaaaaat ttaaccgctt
    10561 gttgggctac tatgggtatt tctgctcaaa attctcaatt tctttctgta cttccgcaat
    10621 aagtgtttgt tcagagggga ggtaaagttg gtattggctg gcaaaaattt tattctgatt
    10681 ttccggtagc gaaaatttta ccaccgcatc atttttatcg gcacaaagca agacaccaat
    10741 agtggcattt tcgtgcggca gtttttcaac tcggtcaaaa taattgacgt acatctgtaa
    10801 ttgccccaaa tcttgatggg tgagcttgtg ggttttaatt tcaaaaatca caaaacattg
    10861 aagtaaacgg ttgtaacaaa ccaaatcgac aaaaaaatca tcaccgtcta ggtgcaaacg
    10921 cttttggcgt gcgataaacg agaaaccgtt acccaattct agtagaaaat cctgcaaatg
    10981 cgtaatgatg gcttgctcta aatccttttc gtaataagca ctttcccgtt ttagtccgag
    11041 aaattccaat accatcgggt ctttaatgag ctgtttcgga tcaaccggct gctgctcatt
    11101 tctggcaaca gcaagcacac tttccttatc attactgagc aataatcgct cgtatagact
    11161 actattaatt tgccgttcca gctggcgtga actccaatta ttcttacaac tttcagccaa
    11221 ataaaattcc cttttgtcag aatcggagat ttgaattaga cgacgatatt gtgtccaatt
    11281 caattgcgac cgcagtgcgg tcgcaattgg aaacgcacga taaaactggc gataacgctc
    11341 taattgacgg ctacaaaaac cacttccaaa ttctggctca agctcttttg cgagcatttt
    11401 aatcaggtat gttccataat cagcacgctc ttgcccttgt tgctcctgtt caaaaatccg
    11461 ttttccgatg tgccaataca tcagcacacg ttggaaatct accgcacgaa ccgcattttc
    11521 acgagcttga gcaataattt gtttaatatc ttagatcatc gttgtttcta ttaacataaa
    11581 agcctccgtt ttggattaag tttatgctta atctatccgg aggcaatttc tttcactcaa
    11641 cttttcgagt catatcacaa ttttattttg ttaaatttaa ttttgcacaa acgcttgcgt
    11701 ttgaacatca gctttgctga tggctcgaag agcgaacgta gtgagtaaat ttttgctcta
    11761 atttgagcgc ttgttgggca agttcttcga cttggtcata gaaatgcacc gcctgtaaac
    11821 gatgcaccaa caccggtctt tcttggatta aattctcaac caaatgttga ttattttgct
    11881 caaattgagc ttttacttta cctagcaatt ttttagcaag atcggtgcta gtttgagcca
    11941 ctacatcgcc aacaaaaggg gaaagcagtt cggcagggtc tttttcgagc tgttcaagta
    12001 atgcagtgaa atgttgcaac acttgaatat cgcccgtcag caccaacgat ttattattaa
    12061 tcagctcggt taatttttgc ttatccgcta gtttcggcag ggtgtcaaat gccagttgca
    12121 ccgtacaatc tgcttccccc tcgtagttgc caagccaatc ggttcggctt tcgctaaaca
    12181 acacaaaaaa gtcgatttta ggcgaagtta gggcgatttt tagcactttt ccggacaatt
    12241 tacgcaaatt cggctcaata tgaggcgagc gtttaagtaa cgcattaaaa gcggtttcaa
    12301 tcagaccaaa ggtaaattgc gggagcatta attgttgttt tacattattt aacattcgta
    12361 cctacttacc ctcttcactt ttgggagaag gatagattgt tcttcattaa gaagcaaaat
    12421 cagggagagg ggtatttgca aaatattgaa taaatatgac cgcttgcccc ctctctctgc
    12481 ttatttcgct aaacgctcat aagcggtctc tctcccacaa agggagagag tcatttaaga
    12541 gaaaactaaa atttataacc tctgtgtaat gccacaatgc cggcacttaa gttgtagtaa
    12601 ttcacgcttt caaagccagt ttgttccatc attgctttta gctcgtcttg tttcgggtgc
    12661 attcggatcg attcagctaa atagcggtaa ctttcggcgt catttaccac cacttcgccc
    12721 actttcggca aaatattgaa tgagtagaaa ttataaagct ggctgattgg gtcgataatc
    12781 ggttttgaga attccaacac aagtaagcga ccgcccggtt ttagcacgcg gaacattgaa
    12841 cgtagggctt tgtctttgtc ggtaacatta cgcaagccaa aactaatcac aatacaatca
    12901 aaagtgttat cagcaaaagg caagcattcg gcattcgctt gaacgtagct cacatttcca
    12961 accacgccta aattgcgtaa tttttcccgc ccgacttcca acattgagct gttaatatcg
    13021 gctaaaatca cctcaccact ttcaccaaca atgcgagaga attttgcggt aaaatcaccc
    13081 gtgccgccgg caagatccag cactttttgc cctttacgca cgccactgca atcaatggta
    13141 aagcgtttcc acactcgatg aatgccgaaa gaaagcaaat cgttcattag gtcatatttg
    13201 cctgccaccg agtgaaacac atttgcgacc agttgctgtt tttcttcttt cgctacggtt
    13261 ttaaacccaa agtgggtggt ttctgccgat tgttgcactt cttgttgcac ttcatcttta
    13321 ggtgctaatt gttctacatc gctcattttc ttgtctctag ttgcaaaatt taggcgtaac
    13381 catagcaaaa aagcggtcgt ttttctttaa ctttttgcaa attttcttaa gtaaataacc
    13441 gctttcttga ctagaaaagc caaattctgt aacattcgca cactattttt tcttgaggat
    13501 tacacatttt ggacagtcat agtcgatact tacccgttta acctatcttg tctaacctca
    13561 atgttaccga caaggtcggt aatgctcgcc tagtatcttt gttccttttt gttccaagcc
    13621 tcctaactat ttggagctaa acatgatccg tgcttttgga ctagataacg catgtttaat
    13681 cagcgttgat gaaactaacc caactttatt aaatgatgcg atttggattg atctcatcga
    13741 tccatcagaa gctgaacgaa ccgtattaga aaaccgctta gaccaaacac tcgctgaaga
    13801 acgtgaattg gaagacttag aggcgtctgc ccgtttcttt gaagatgaag acggtttgca
    13861 cctgcactcg ttcttttact gcttagatga tgacgattac gccgatattg ccactgtcgc
    13921 cttcactatt cgtgacgggc gtttgtttac cttgcgtgat cgggatttac ccgcatttcg
    13981 cttgtatcga atgcgttccc gccgtgagaa attgattgac agcaacgcct atgaactctt
    14041 actcgattta tttgagacca aaatcgagca gcttgcagac gtaattgaag aagtctatgc
    14101 tgacttagaa aaattaagtc gggttattct aaacggtcag caagaaaatg agaatttcaa
    14161 tgatgccctt tctcgcttaa ctgaatttga agatgcaagt tcaaaagtgc gtttatgttt
    14221 gatggatacg caacgggcgt taagtttctt actgcgtaaa acccgtttgc cgaataatca
    14281 gctagaacaa gcccgtgaca ttatgcgaga tattgaatct ctgcaaccgc acaatgaatc
    14341 cttgttccaa aaagtgaatt ttttaatgca agcggcaatg ggttatatca atattgagca
    14401 gaaccgaatt atgaaattct tctcggtggt gtcagtgatg ttcctacctg ctacgctggt
    14461 tgcttctact tacggtatga actttgaatt tatgccggaa cttcatttcc aatatggcta
    14521 ccctatggcg attggtttaa tgattgttgc cgcctccgcc ccttatcttt attttaaacg
    14581 taaaggttgg ttataattta ttttta
//
LOCUS       DANLRW010000065        14280 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.065, whole genome shotgun sequence.
ACCESSION   DANLRW010000065 DANLRW010000000
VERSION     DANLRW010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14280
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.065"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            166..597
                     /locus_tag="PXA71_001633"
     CDS             166..597
                     /locus_tag="PXA71_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL5105733.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLNDIRLVEPKKGNPFYACRIAAL
                     VGESDSPEYRYFDMNVVGKETETLIKRCQKAVSEEKKVLVSFVMADLWFDTFTYSTDS
                     KFHKKGDTGVSVKGRLIRIKMIKIDGEIAYQEKPKSDEQSE"
     gene            615..1607
                     /locus_tag="PXA71_001634"
     CDS             615..1607
                     /locus_tag="PXA71_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005588345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5105734.1"
                     /translation="MLCWALLLDVQDLRVTFKTPDGDVTAVNDLTFSLNAGETLGIVG
                     ESGSGKSQTAFALMGLLADNGRISGSAKFNGQEILNLPETQLNRLRAEQIAMIFQDPM
                     TSLNPYMKIGEQLMEVLMLHKGMDHKTAFEESVRMLDAVKMPESRKRMNMYPHEFSGG
                     MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKSEFNTAIIMITHDLG
                     VVAGICDNVLVMYVGRTMEYGTAEQIFYTPSHPYSIGLIGAVPRVDGQEEELITIPGN
                     PPNLLRLPSGCPFQPRCVHATKQCLKAPALTLLNDQRLRACFVPAEQLIRGNAS"
     gene            1604..2593
                     /gene="oppF"
                     /locus_tag="PXA71_001635"
     CDS             1604..2593
                     /gene="oppF"
                     /locus_tag="PXA71_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000994906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HDL5105735.1"
                     /translation="MNTEKKVILEVKDLSVHFNIKDTKSLFFAKHQTLKAVNHVSFQL
                     YEGETLGVVGESGCGKSTLARAIIGLVESSGGNILWLGKELTQQSAKEWKTIRSDIQM
                     IFQDPLASLNPRMTIGSIIAEPLKIYQPHLTAEEVKEKVRAMMMKVGLLPNLINRYPH
                     EFSGGQCQRIGIARALIVEPKLIICDEPVSALDVSIQAQVVNLLKSLQREMGLSLIFI
                     AHDLAVVKHISDRVLVMYLGNAVELGDYEQVYHDTKHPYTKALMSAVPIPDPQLERNK
                     QIQLLEGDLPSPINPPSGCVFRTRCPLADQHCIADKPLLKGRDNHVVACFKAE"
     gene            complement(2697..3455)
                     /locus_tag="PXA71_001636"
                     /pseudo
     CDS             complement(2697..3455)
                     /locus_tag="PXA71_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014326384.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
     gene            complement(3585..4226)
                     /gene="bioD"
                     /locus_tag="PXA71_001637"
     CDS             complement(3585..4226)
                     /gene="bioD"
                     /locus_tag="PXA71_001637"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HDL5105736.1"
                     /translation="MAKVFFITGIDTDIGKTIATGWYAKKLMQQGASVITQKMIQTGC
                     RGIAEDLLIHRKIQGIELTEEDKQGITCPYVFDYPCSPHLAAKLEPRTIERKKIETCT
                     ALLCEKYDYVLLEGAGGLCVPYNEEETTLDYLCQHQYPVILVTSGKLGSINHTLLSLQ
                     VLNSKRVSVHAVIYNLYPETDQVISQETQHFLRRYLEKYSPNTLFEIMDLISV"
     gene            complement(4244..4999)
                     /gene="bioC"
                     /locus_tag="PXA71_001638"
     CDS             complement(4244..4999)
                     /gene="bioC"
                     /locus_tag="PXA71_001638"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HDL5105737.1"
                     /translation="MDRIDKGRIKQRFSAAVSNYDQQARAQQQIHQRLLSLLSYIDRQ
                     AFQRALEIGCGTGGLTKQLMSQLQVEHWELNDLCDMREHLQSVLPQPFHFHCGDAEQL
                     PFPQQYDLIASASVVQWFEDKAGFIARCKVRLKKHGFLLFSTFTPENLTQIKHLTGVG
                     LTYPRLEDWQKWLVPEFEILALEHEEIVLHFDDPLAVLKHLKQTGVTATQQQRWTKGQ
                     LHAFCQQYQQHYRNAQHKVELTYTPMYVLARLT"
     gene            complement(5003..5650)
                     /locus_tag="PXA71_001639"
     CDS             complement(5003..5650)
                     /locus_tag="PXA71_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005758126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HDL5105738.1"
                     /translation="MKTQHISQQGDNLIVYFAGWGTPPSVVEHLILPENYDLCLCYDY
                     RDLHCDVDFSAYQHIRVVAWSMGVWVAERVMQGYPLLSATAINGTGLPCDDQYGIPEA
                     IFAGTLSGLNEDNRTKFERRICGSKTLLRDYQHYSMRPTLQEIHAELTALYTFLQQDH
                     RTDLISWSKAIVGSKDKIFPAQNQRAYWQDRCAITEIAGEHLLFPHFTHWETCWL"
     gene            complement(5647..6810)
                     /gene="bioF"
                     /locus_tag="PXA71_001640"
     CDS             complement(5647..6810)
                     /gene="bioF"
                     /locus_tag="PXA71_001640"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HDL5105739.1"
                     /translation="MIRYYQQQLADLKAQNQFRQLPQLIHRGRFIQREDNTMLNMSSN
                     DYLGLANNEALRQAFFTQYQDQLPALTSSSSRLLTGSFPIYDELESLMAQAFGRETAL
                     LFNSGYHANIGILPALADKKTLIVADKLVHASMIDGIRLAQCEFVRFRHHDYVHLEQI
                     LQKNDRTFERIIVVTESVFSMDGDCADLTQLVALKQRYPQVMLYVDEAHAIGVLGEKG
                     LGLAEQQGCINQIDILVGTFGKALGSMGAYVICDQVIRDYLVNKMRPLIFSTALPPFN
                     VAWTHFVFQQLPHLQAERAHLAQLSQHLRQAIVDIFQVPMPSESCIVPYILGDNELTV
                     RTAQRLQQQGYYCLPIRPPTVPKGTSRIRFSLTADMQVAEVEQFIACLRELAE"
     gene            complement(6807..8108)
                     /locus_tag="PXA71_001641"
     CDS             complement(6807..8108)
                     /locus_tag="PXA71_001641"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016533607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDL5105740.1"
                     /translation="MNEQQLLECDRQHIWHPYAALNADFPLFAVERAEGVYIQLKNGQ
                     QLIDGMSSWWSAIHGYNHPRLNHAATQQLSQMSHVMFGGLTHQPAVELAQQLVNILPE
                     SLDKIFFADSGSVAVEVAMKMAVQYQHAKGETQRYKFATIRSGYHGDTWHAMSVCDPV
                     TGMHSLFAKGLPVQYFLPQPPVKFGQAWQPEAMQPLQDLLAQHGDEIAGLILEPVVQG
                     AGGMYFYSPEYLVQAKALCEPYGILLIFDEIATGFGRTGKLFACEHANVVPDVMCIGK
                     ALTGGYLTLSATITNQAVADVICSGEAKCFMHGPTFMANPLACAVAAESIKLLLASPW
                     QQRIQQIEQQLRQELRQAEALDCVAEMRVLGAIGVIEMKAPVNMASLPPRFVQNGVWV
                     RPFGKLVYLMPPYIISSDQLSQLIHGTIRTLQEEYAHKESL"
     gene            8250..9137
                     /gene="psd"
                     /locus_tag="PXA71_001642"
     CDS             8250..9137
                     /gene="psd"
                     /locus_tag="PXA71_001642"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755522.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HDL5105741.1"
                     /translation="MNILEKKAQLSYWQRIKIAFQYVMPQLYLTRLAGWFAKQQWGAV
                     THFVIKLFAKKYHVDMSEAAKPNFSDYASFNEFFIRPLADNARPINQNPTALCLPADG
                     RISQLGHIEQDLLLQAKGHYFSLNDLLAGDEALAHHFKDGEFATTYLSPRDYHRVHMP
                     CDATLCKMIYVPGDLFSVNPFLAEHVPNLFARNERVICVFDTEFGKMVQILVGATITA
                     SMSTVWAGVINPPRPEKITTWTYEGESAVKLLKGQEMGAFQLGSTVINLFEKDRVQLA
                     SHLQVDSPVRMGEILAHQK"
     gene            9162..9716
                     /locus_tag="PXA71_001643"
     CDS             9162..9716
                     /locus_tag="PXA71_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5105742.1"
                     /translation="MSQQFFDQVSLESQLEVSAEAVAKGIFDVLNQNPPALELNEVSH
                     ALQTLQQQAKFKEIEAVGAQFLAENAQKAGVNTTESGLQYEVLVAGEGQIPAREDKVR
                     VHYTGTLIDGTVFDSSVKRGQPAEFPVNGVIAGWIEALSMMPVGSKWRLTIPHNLAYG
                     ERGAGASIPPFSTLVFEVELLAIL"
     gene            complement(9776..10099)
                     /locus_tag="PXA71_001644"
     CDS             complement(9776..10099)
                     /locus_tag="PXA71_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005755520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105743.1"
                     /translation="MNWKAVLIFSVLGSLVSCASYSEHAVQRIEAGKSFAVTGNTKRI
                     NTMACQDNDDWYLDGYRVGKSFREHQQKMLIQRTAYCEEQTGKAVPDKFRHSWNSGYQ
                     QGLKR"
     gene            complement(10123..11226)
                     /gene="proB"
                     /locus_tag="PXA71_001645"
     CDS             complement(10123..11226)
                     /gene="proB"
                     /locus_tag="PXA71_001645"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005719361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HDL5105744.1"
                     /translation="MKIDKTLVVKFGTSTLTQGSAKLNLPHMIDIVRQLAQLHQAGFR
                     LVIVTSGAIAAGRHYLNHPQLPPTIASKQLLAAVGQSQLIQTWEKLFAIYDIHIGQIL
                     LTRADIEDRERFLNARDTLRALLDNQIIPVINENDAVATSEIKVGDNDNLSALVAILV
                     QAEQLYLLTDQQGLFDRDPRKHPDAKLIADVDKITDHIRAIAGGSGTSLGTGGMSTKI
                     SAADVATRSGIETIIAPGNRPNVIVDLAYGQAIGTKFSVQADRLESRKQWLYAAPSAG
                     IITIDAGAENAMLIQHKSLLPAGIVNVEGRFSRGEVVKIRTQQGKDVALGMPRYNSDA
                     LHLIQGKHSQDIEQVLGYEYGAVAVHRDDMIVL"
     gene            11392..12380
                     /locus_tag="PXA71_001646"
                     /pseudo
     CDS             11392..12380
                     /locus_tag="PXA71_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252470.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
     gene            12455..13102
                     /locus_tag="PXA71_001647"
     CDS             12455..13102
                     /locus_tag="PXA71_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL5105745.1"
                     /translation="MTINTYAKFAPTVFVAKCSESHTKGEIITLTSKYGNETEVQVHN
                     LVKQDGEHYFYSFTRCDGMDSQSFAQQKAERYQGYADNAAKRSQDWVNAANEGCDFLS
                     LGEPIKIGHHSEKRHRNLIERNARRMDNAVAEMNKAASYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKTKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            13126..13533
                     /locus_tag="PXA71_001648"
     CDS             13126..13533
                     /locus_tag="PXA71_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL5105746.1"
                     /translation="MNRQGIYINGKQVFDSQGEDIQSIGFFGCNIQTVVGINKGSILV
                     SSNSNQLLVNGQSIELGSEPVLKIEVLGNVQKLSAGAADVSITGDAGSVDTVSGDVSI
                     KGNVASYVKTVSGDVRCRAITGSVETVSGDIYR"
     gene            13631..13981
                     /locus_tag="PXA71_001649"
     CDS             13631..13981
                     /locus_tag="PXA71_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105747.1"
                     /translation="MTTINLSQQERELVEFVWNNRNTPWFFHCSVSNVSRNNTSRQIA
                     VCVIKDNQLISLDELIAKLCGYKLRQNGLYVTVHNMDAVFDTLYRFMCKLNDEMEANE
                     NVCPYLSLAHYEVF"
BASE COUNT         4115 a         3117 c         2962 g         4086 t
ORIGIN      
        1 agcattctga aagggaacgc cacttttgtg ggaatgccac ctaaaccctc taccatctca
       61 gtgaagcatc attgagattt cattttactt ccacctcgcg gggaacattt ttcccgtgtt
      121 gggcaaggat gtttctccgc ttttttacat ttggagaaac aaactatgac aactcaaact
      181 tctactcaaa aaaattactt caaccttcat acaacaggca ttggctatct aaacgatatt
      241 cgtttggtag agcctaaaaa aggaaatcct ttttatgcct gccgtatagc agctctggtt
      301 ggcgaatctg actctcctga gtacagatat tttgatatga atgtagtcgg taaagagact
      361 gaaacactta tcaaaagatg ccaaaaagca gttagtgaag agaaaaaagt gcttgtgtca
      421 tttgtaatgg ctgatttgtg gttcgataca tttacttact caacagatag taaattccac
      481 aaaaaaggcg ataccggtgt atctgtaaaa ggtcgcttaa tccgcatcaa aatgattaaa
      541 attgatgggg aaatagccta ccaagaaaag ccaaaatcag atgagcaatc tgagtaattt
      601 tacctaagcc cgacatttta tgttgggctt tattactcga tgtacaagat ttgcgcgtaa
      661 cttttaagac cccagatggc gatgttactg ccgtcaatga tctgactttt tctttaaatg
      721 ccggtgaaac cctcggcatt gtcggcgaat ctggctcagg aaaatcgcaa accgcttttg
      781 ctctaatggg gctattagca gataacgggc gaatttcagg atcagcaaaa tttaatggac
      841 aagaaattct caacttgcct gaaacacaac ttaaccgctt gcgtgctgaa caaattgcga
      901 tgatcttcca agatccaatg acctcgctga acccttatat gaaaatcggc gaacagctaa
      961 tggaagtact gatgttgcat aaaggcatgg atcataaaac tgcgtttgaa gaatcggtac
     1021 ggatgttaga tgcggtgaaa atgccggagt cacgtaaacg tatgaatatg tatccgcatg
     1081 aattttccgg cggtatgcgt cagcgtgtga tgattgcgat ggcattactt tgccgtccga
     1141 aactcctcat tgcggatgaa cccacaactg cgctcgatgt gacggtgcaa gctcaaatca
     1201 tgaccttatt aaacgaatta aaaagcgagt ttaataccgc cattatcatg attactcacg
     1261 atctcggtgt ggtcgcagga atttgcgata atgtgttggt gatgtatgta ggcagaacca
     1321 tggaatacgg caccgctgag caaattttct ataccccaag ccacccttat tctatcggct
     1381 taattggtgc agtgcctcgc gttgacggac aggaagaaga actcattact attccgggta
     1441 atccacctaa cttattacgc ttaccgagtg gctgtccttt ccaaccacgt tgcgttcatg
     1501 caactaaaca gtgcctcaaa gcaccggcgt taaccttgtt aaatgatcaa cgtttacgcg
     1561 cttgttttgt ccctgccgag caattaatcc gaggtaacgc atcatgaaca cagagaaaaa
     1621 agtgatccta gaagtgaagg atttaagcgt tcatttcaac atcaaagata cgaaatcttt
     1681 attctttgct aaacaccaaa ctttaaaggc cgtcaatcat gtctcttttc agttatacga
     1741 aggcgaaacc ttaggtgtgg tcggtgaatc gggctgtgga aaatcaactc tcgcacgcgc
     1801 gattattggc ttagtggaaa gctctggcgg taatatttta tggctaggta aggagttaac
     1861 tcaacaaagt gcgaaagaat ggaaaacgat ccgtagcgat attcaaatga ttttccaaga
     1921 tcctttagcc tccctgaatc cacggatgac cattggcagt atcattgccg aaccattaaa
     1981 aatttaccaa ccccatttaa ccgcggaaga agtgaaagaa aaagtacgcg cgatgatgat
     2041 gaaagtgggc ttattaccta acttaatcaa tcgctatcca catgaatttt cgggtggaca
     2101 atgtcagcgt atcgggattg cgcgcgcctt gattgtggaa ccaaaactca ttatttgcga
     2161 tgagccagtg tccgccttag atgtttcaat ccaagcacaa gtagtgaatt tattgaaatc
     2221 tttacaacgc gaaatggggc tatcattgat tttcattgca cacgaccttg ctgtggtgaa
     2281 acacatttcc gatcgtgttt tggtcatgta tcttggtaac gcggtggaat taggtgacta
     2341 tgaacaagtc tatcacgata ctaagcatcc ttataccaaa gctttgatgt ctgcggtacc
     2401 gattcctgat ccgcaattag aacgcaataa acaaattcaa ttgcttgaag gcgatctccc
     2461 ttccccgatt aatccgccgt cgggctgtgt gttccgcacc cgttgcccac tggcagatca
     2521 acactgtatt gcagacaaac cgctcctcaa aggacgagat aatcacgttg ttgcttgttt
     2581 taaagccgag taatacacac aaccgcacaa aaaagtgcgg ttgttttttt gcgaatattc
     2641 acagtcagac tttcgtgata ctttcgctct gagataagga ttacgataca gagaagttat
     2701 tcaacaatca cacgtgcatt gatcggttgc actggacgat tattgtgtcc tttcatcaag
     2761 gtcgcaaacg cctcaacttg agattggcta atgttgtcat agtgttttaa cactaaccaa
     2821 tttacacctt cagaacaagg tggtgtagtt aatgacccgc tgaaacgata gtaatcgcgt
     2881 tttttcggaa ttaatgttgc tgggtcaaaa gcggtactaa gcgtatattt ctcccctgct
     2941 ttttgcggga agttttgcca aattggggct aaccattggt tttcacttga taatacatag
     3001 agcacgccaa gcacagcaag attcccttca ttgtctgcgt gtacaaaatg tgcttccatc
     3061 gggaaggatt tacctcaaat taagttttca ctcggcacat ggaaatggaa ttgtttaagg
     3121 gtaaaagtct ttccattaag ctgcatgcga ttacttgcct ctttgaaatc cacttgaata
     3181 gtatgcccat tattgacaat ctccacattg gaaggtcgat aatccagctt aatcggcgct
     3241 aacttaccat caatcgtatg cttgatatct attggtgttt ggtttttacc ttcgccacaa
     3301 atacggaatt tgggtgaaag ttcagcccaa tgttctggcg attcgtgtcc ggtgtatccc
     3361 caatgcgtgt gcgtttcttc tttcttaagg gggcttgtac acgctgtcaa tgctaatgca
     3421 cctaacgtaa gcacaaaaag gtttgatttt ttcatagcct agctcctgat taaaagagat
     3481 gaattgatga gacaacctaa actcaatgat gccttaatcc gagacgcttt catcttaggc
     3541 aaaacaacac tccatttcaa gtataacttg ctcaagaata tatcttagac cgaaatcaaa
     3601 tccattattt caaataaggt attaggcgag tatttctcta aataacgacg taaaaaatgt
     3661 tgtgtttctt ggctaatgac ttgatctgtt tccggataca agttgtatat cacagcatgc
     3721 acacttactc ttttggagtt gagtacttgt aaactcaata aggtatgatt aatactacct
     3781 agcttgccag aggtaactaa aatcacgggg tattgatgct gacaaagata atcaagggtg
     3841 gtttcttcct cattataagg tacacacaag ccgcccgccc cttccaataa tacataatca
     3901 tatttttcac acaaaagtgc ggtgcaggtt tcaatttttt tacgttcgat cgtgcgcggt
     3961 tctaatttcg cggctaaatg cggtgagcaa ggataatcaa acacgtaagg acaagtgata
     4021 ccttgcttat cttcttctgt aagctcaata ccttgtattt ttcggtgtat gagtaaatct
     4081 tcggcaattc ctcggcagcc tgtttggatc atcttttgcg tgatgacact tgcgccttgt
     4141 tgcatcagtt tcttggcgta ccaacctgtg gcgatggttt tgccaatatc ggtgtcgatg
     4201 ccagtgataa aaaaaacctt tgccatactt tttccttcta agattaagtt aaacgcgcca
     4261 gcacatacat cggcgtgtaa gtgagttcta ctttgtgttg tgcgttacgg taatgttgtt
     4321 gatattgttg gcaaaaggcg tgcaattgcc cttttgtcca cctttgctgc tgtgtggcag
     4381 taacgcctgt ttgtttcaaa tgttttaaca ccgctaaggg atcatcaaag tgcaacacaa
     4441 tctcctcgtg ttcgagggct aaaatctcaa attcaggcac tagccacttt tgccagtcct
     4501 caagacgtgg ataagttaac cccacaccgg tgaggtgttt gatctgtgtt aaattctcgg
     4561 gcgtgaaagt actgaataac aaaaatccgt gcttttttaa gcgcacttta caacgcgcaa
     4621 taaaacccgc tttatcttca aaccattgca ccacggaagc actggcaatc aaatcatact
     4681 gctgcggaaa gggaagttgt tccgcatcgc cacaatggaa gtgaaaaggt tggggcaaca
     4741 ctgattgcag atgctctcgc atatcgcaaa ggtcattcag ctcccagtgt tcaacctgca
     4801 actgtgacat taattgcttc gttaatccac cagtaccaca tccaatctct aatgcacgtt
     4861 ggaatgcttg tctgtcgata tacgacaata aactaagcaa acgttggtga atctgctgtt
     4921 gtgctctcgc ttgctgatca tagttcgata cagcggcaga aaaacgctgt ttaatgcgtc
     4981 ctttatcaat acgatccatg tgctacaacc aacaagtttc ccaatgggtg aagtgaggaa
     5041 acaacaaatg ctcccctgcg atttctgtta ttgcacaacg atcctgccaa taagcccgct
     5101 gattttgtgc agggaaaatt ttatcttttg agccgacaat cgccttgctc cacgagatta
     5161 aatctgtacg gtgatcttgt tgtaaaaagg tataaagtgc ggtcagttca gcatgaattt
     5221 cctgtaatgt gggacgcatg gaatagtgct gataatctct taacagcgtt tttgaaccac
     5281 aaatacgacg ttcaaattta gtccgattat cttcatttaa accagataac gtgccagcaa
     5341 aaatggcttc gggaatacca tattggtcat cacaaggtaa gcccgtgcca ttgatcgccg
     5401 tagcagatag cagtggataa ccttgcatca cacgctccgc tacccacacg cccattgacc
     5461 atgccaccac gcgaatatgt tgataagcgg aaaaatcaac atcgcaatgc agatctcgat
     5521 aatcatagca aaggcataaa tcataatttt ccggcagaat caggtgctcg accacgctcg
     5581 gcggtgtgcc ccaccctgca aaatagacga tcagattgtc gccttgctgt gaaatatgtt
     5641 gtgttttcat tcagcaagct cccgtaaaca agcaataaat tgttccactt ccgccacttg
     5701 catatctgca gtcagtgaaa aacgaatacg agaggttcct tttgggactg tcggcgggcg
     5761 aatcggtaag caataatagc cttgttgttg caaacgttgc gccgttctta ctgtcagttc
     5821 gttatcgccc aaaatataag gtacgataca actttcactt ggcatcggga cttgaaaaat
     5881 gtcaacaatc gcttggcgta aatgttgact aagctgagca agatgtgcgc gttcggcttg
     5941 caaatgtggt aattgttgaa agacaaaatg cgtccatgcc acattaaacg gcggaagtgc
     6001 cgtggaaaaa atcaatgggc gcattttatt aaccaaataa tctcggatca cttgatcgca
     6061 aatcacataa gcccccatag agcccaacgc cttgccaaac gtaccgacta aaatatcaat
     6121 ttggttgata cagccttgtt gttctgctaa ccctagcccc ttctccccca atacgcctat
     6181 cgcatgggct tcatctacat ataacatcac ttgcggatag cgctgtttta atgcgaccaa
     6241 ctgggtgagg tctgcacagt caccatccat actaaacacg gattccgtga ccacgataat
     6301 ccgctcaaaa gtgcgatcat ttttttgcaa aatttgttca aggtggacgt aatcatgatg
     6361 acgaaaacgc acaaactcac attgtgccaa gcgaatgcca tcaatcatac tggcatgtac
     6421 cagtttatcc gccacaatca gcgttttttt gtccgctaaa gcaggcaaaa tcccaatatt
     6481 agcatgataa ccgctattaa atagcaaggc agtttctcgt ccaaatgcct gcgccattaa
     6541 gctttctagc tcatcataaa tcggaaaaga gcctgttaat aaacgggagg aagaagaagt
     6601 caatgcaggg agttgatctt ggtattgcgt gaaaaatgcc tgacgcaagg cttcgttatt
     6661 ggctaaacct aaataatcat tggaggacat attcagcatc gtattgtcct cacgttgaat
     6721 aaaacgccct cggtgaatta gttggggcag ttggcgaaat tgattctgcg cctttaaatc
     6781 agctaactgc tgctgataat acctgatcat agagattcct tatgtgcata ttcttcttga
     6841 agggtgcgaa ttgtgccatg aattaattga gacaattgat ccgatgagat gatatacggt
     6901 ggcatcaaat acactaattt gccaaatgga cgcacccaaa cgccattttg cacaaagcgt
     6961 ggtggtaaac ttgccatatt gacaggcgcc ttcatttcaa tcaccccaat cgctccaagt
     7021 actctcattt cagcgacaca atctaaggct tccgcttggc gcaattcttg acgtaattgc
     7081 tgttcaatct gttgaatacg ttgttgccaa gggcttgcca ataacaattt gatactttct
     7141 gctgctaccg cacacgccag tggatttgcc ataaacgtcg gaccgtgcat aaaacatttt
     7201 gcctcgccag aacaaatcac gtctgctacc gcttggttgg taatggtagc ggatagagtt
     7261 aaataccccc ccgttaaagc tttaccgata cacatcacat ccggcacgac attggcatgt
     7321 tcacaagcaa ataatttgcc tgtacgccca aatcctgtgg caatttcatc aaaaatcagc
     7381 aaaatgccgt acggttcgca taaggctttt gcttgcacca aatactcagg ggaataaaaa
     7441 tacataccac ccgccccttg cactaccggt tctaaaatta aacccgcaat ctcatcacca
     7501 tgttgtgcca ataaatcctg taacggttgc atcgcttcgg gttgccaagc ttgcccaaat
     7561 tttaccgggg gttgcggtaa aaaatattgc acgggtagcc ctttggcaaa caagctgtgc
     7621 atgccggtca cgggatcaca cacggacatc gcatgccaag tatcaccatg atagcccgaa
     7681 cgaatcgtag caaatttata gcgctgtgtt tcgcctttag catgttgata ttgcactgcc
     7741 attttcatcg ccacttccac ggcgaccgaa ccactatcgg caaagaaaat tttatccaaa
     7801 ctttccggca agatgttgac cagttgctgc gccagttcta ccgctggttg gtgcgttaat
     7861 ccaccaaaca tcacatgact catttgactc agttgttgcg tggcagcgtg gtttaaacgg
     7921 gggtgattat agccatgaat cgctgaccac cacgatgaca tgccatcaat caactgctga
     7981 ccgtttttta actggatata cacaccttcg gcacgttcta ctgcaaataa gggaaaatcc
     8041 gcatttaacg ccgcataagg gtgccaaata tgttgtcgat cacattctaa aagttgctgc
     8101 tcattcatcg tttcacctcg gttgtgaatc gccctttcaa ctggcgtaaa ttcacgcaaa
     8161 tacttacata aacggaataa cttgttataa tcgccaagca tttggctttt caagcccatt
     8221 attctaactt aaaaagatga tttattacta tgaatatatt agaaaaaaaa gcacaactga
     8281 gttactggca acggattaaa attgcctttc aatatgtgat gccacaactt tatttaacac
     8341 gtcttgcagg ctggtttgca aaacagcaat ggggtgctgt cacacatttt gtgattaaat
     8401 tattcgcgaa aaaataccat gtggatatga gtgaagctgc aaaaccaaat ttcagcgact
     8461 atgcgagctt taatgaattt tttatccgtc cattagcgga caatgcccgt ccaattaatc
     8521 aaaatcctac cgcactttgt ttaccggcag atggtcgtat tagtcagtta ggacacattg
     8581 agcaggattt attgctacaa gccaaaggac attatttcag cttgaacgat ttgttagctg
     8641 gcgacgaggc gctcgctcat cattttaaag atggcgaatt tgccaccacc tacctctcac
     8701 cacgcgatta ccaccgtgtg catatgcctt gtgatgccac cttatgcaaa atgatttatg
     8761 tgccaggtga cttattctca gtcaatccat ttttagccga acacgtgcca aacttatttg
     8821 cacgtaatga acgcgtgatc tgcgtattcg ataccgaatt tggtaaaatg gtccaaattt
     8881 tagtcggcgc aaccattacc gcgagtatga gcaccgtgtg ggcaggtgtg atcaacccgc
     8941 ctcgtccaga aaaaatcacc acctggacct atgaaggaga aagtgcggtc aaattactga
     9001 aaggacaaga aatgggagcc tttcaattgg gctcgacggt gatcaattta tttgaaaaag
     9061 atcgtgtgca actggcatct catttacaag tggatagccc ggtacgtatg ggtgaaattc
     9121 ttgcccacca aaaataattt ttaaccacaa taggaaaaac aatgagtcaa caatttttcg
     9181 accaagtgtc attagaaagc caacttgaag tgagcgccga agccgtcgcg aaagggatct
     9241 ttgatgtgtt aaatcaaaat ccaccagcac ttgagttaaa tgaagtgagt catgccctac
     9301 agactttgca acaacaagcg aaattcaaag aaattgaagc cgttggtgca caattcttag
     9361 ctgaaaacgc gcaaaaagcg ggggtaaata ctacggaatc tggtttacag tatgaagtgt
     9421 tagtggctgg tgaagggcaa attccggcac gcgaagacaa agtgcgtgtg cattacactg
     9481 ggacattaat cgacggtacc gtctttgaca gctcagtaaa acgtggtcaa cctgcagaat
     9541 tcccagtaaa tggcgtgatc gctggttgga ttgaagcctt gtccatgatg ccagtgggtt
     9601 caaaatggcg tttaaccatt cctcacaacc tcgcttatgg cgaacgtggt gctggtgcct
     9661 ccattccgcc attcagtacc ttagtgtttg aagtcgaatt attagccatt ctttaaagct
     9721 aaacgctaga cataaaaaag tgcggtcatt ttccgcactt ttttatgtct agcgtttatc
     9781 gtttcaagcc ttgctgatag ccgctgttcc acgaatggcg gaacttgtcc ggcacagcct
     9841 tgcccgtttg ttcttcacag taagccgttc gttgaatcaa cattttttgt tggtgttctc
     9901 gaaatgattt tcccacacga tagccgtcca aataccaatc atcattatct tgacatgcca
     9961 tggtattaat ccgttttgta ttccccgtca ctgcaaaaga tttgcctgcc tcaatacgtt
    10021 gcaccgcatg ttcagagtat gaagcacagc tcaccagcga acctagtaca ctgaatatca
    10081 atactgcttt ccaattcatc ttgttacctt tctttttctg atttataaca caatcatatc
    10141 gtctcggtgt accgcaaccg ccccatattc ataaccgaga acctgttcga tatcttgcga
    10201 atgtttgcct tgaattaaat ggagcgcatc gctgttataa cgtggcatcc ctaaggcaac
    10261 atccttgcct tgctgagtac gaatttttac cacttcaccg cgtgaaaagc gcccttccac
    10321 gtttacaatc ccagcaggca ataacgattt atgttgtatt aacatcgcgt tttccgcccc
    10381 cgcatcaatg gtaataatac cggctgacgg cgccgcatat agccattgtt tacgactttc
    10441 taagcgatct gcttgcacac taaatttggt gccaatggct tgcccataag ctaagtccac
    10501 aatcacattc gggcgattac ccggtgcaat aatggtttca atgccggagc gggttgccac
    10561 atccgcggca ctgattttgg tggacatgcc acctgtgcct aacgaggtgc cacttccgcc
    10621 cgcaatcgcg cgaatatgat cggtaatttt gtccacgtcg gcgatcaatt tggcgtctgg
    10681 atgtttgcgc ggatcacgat caaataaacc ttgctgatca gtaagcaaat acaactgttc
    10741 tgcttgcacc aaaattgcca ctaacgcgga taaattatcg ttatcgccta ctttaatttc
    10801 tgacgtagcg acagcgtcat tttcattaat cactggaata atctgattgt ctaataaggc
    10861 gcgcaaagta tctctggcat ttaaaaaacg ttcacgatct tcaatgtcgg cacgggtcaa
    10921 taaaatctgc ccaatatgaa tatcataaat ggcaaacaat ttttcccacg tttgaatgag
    10981 ctgactttgt cctaccgcag ccaataattg tttcgaggca atcgtcggtg gcaattgcgg
    11041 gtgatttaaa taatgacgac ctgccgcaat cgcccctgag gtaacaatca ctaaacgaaa
    11101 gcccgcttga tgaagctgtg cgagctgacg cacaatatct atcatatgag gtaaatttaa
    11161 cttcgccgat ccttgcgtaa gcgtactggt tccaaatttt acaacgagtg ttttgtcgat
    11221 tttcatcttc tctatcttct tatttttgtc gcacaaaatt gaagctaact taccattaat
    11281 catcagaaaa atcatctcgt ttacttgcta ttttctatga tttagcacaa attttttctc
    11341 actaaaaggc atataataaa gcttcttgat ttttcagcta ggaacccgat tatgacctca
    11401 acctcttcac aagaaacgga gcggcaacga gaaatcactc gcctttgtgt tcaagttgcc
    11461 caactcttat acaacatggt gcagaaagtg ccatcgttgt gcaaatggca catcgcttag
    11521 gcttagccct cggtgtagat agcgtagaat gtgccctcac gccaaatgcc attattctta
    11581 ctacattagc ccaagaccat tgcatcacga cagtccgtaa aaaccaagac aaaggaatta
    11641 atatgcaagt ggttaccgaa gtgcaacgta ttgtgattac agcagaacgt aaaatctatg
    11701 atatgcaaca agtgcatgcc aaactggctc gcattaaacc gcttaaatac aatcgctatt
    11761 ttgtgatgtt gatgattggc gtatcctgtg ccagttttgc tcatttatct ggtggggacg
    11821 cactagtttc attggttaca tttctcgccg caacactcgc catgtatgtt cgccaatcac
    11881 ttgccgcaag acactataac cccttaattg tatttgcggt gaccgccttt gtcgcctcac
    11941 taattgcggg tatcgcgttg aaatataaca tcggcaatca gccccaaatt gccttggcat
    12001 ccagcgtatt attgctcgtt cccggctttc cactgattaa tgcactcgcc gatattttaa
    12061 aagggcatat caatatgggg attgcccgtt gggcactcgc gacaatcctc acatttgggg
    12121 catgcttagg cattgtattt gcgctgagtt tattcttaga ggaaatctgt atgctaaata
    12181 aattcattca agatgaattt ctacggctag atcaacgtta tgcagcttgg tatcaaagtg
    12241 aagaaacgga tgaagttgcc agaatgggga ttcaagaaag tgagcggatt ttgaaaattc
    12301 tgtatgcact gaaatataac gaagacccta tgcaaaatgg tttaggctat attgcattta
    12361 tggcatcaaa aggccaataa tttacttatc tcaacaattt acccaccggg gaaactcctc
    12421 gatggcgttt cccctacttt ataggagaaa cgctatgact attaacactt atgcaaaatt
    12481 tgcacctacc gtttttgttg caaaatgctc tgaatcacat accaaaggtg aaattattac
    12541 gctaaccagc aaatatggta atgaaaccga ggttcaagta cataatcttg ttaaacaaga
    12601 tggcgagcat tatttttatt catttactcg ttgtgatggg atggatagtc agtcatttgc
    12661 tcaacaaaaa gcagaacgct atcaaggcta tgcagataat gcagccaaac gtagtcaaga
    12721 ttgggtaaat gccgctaatg aggggtgtga ttttttgagt ttaggtgagc caataaaaat
    12781 tggtcatcac agcgaaaaga gacaccgtaa ccttattgaa cgtaatgctc gccgtatgga
    12841 caatgcggtt gcagaaatga acaaagctgc aagttatgaa tctcgtatcg catattggga
    12901 aaaaatggca ggaaaaattg acctgtctat gccggaaagt ctggaatact ttaagtttga
    12961 attggataaa gccaaaacaa agcacaaaga attgaaggac aaccccgaga aacgagagca
    13021 tggttattca ctgacttatg ctaaaaaagc agttaatgaa cttgagaaaa aagtaaaatt
    13081 agctgaatta ctttgggcat aattatttac aaaggagatg acgatatgaa tcgacaaggt
    13141 atttatatta atggcaaaca ggtgtttgat tcacaaggcg aagatattca aagcattgga
    13201 ttttttggct gcaatattca aacggtcgta ggcataaaca aaggaagtat tttagtctcg
    13261 tccaatagta atcaattatt ggtgaatgga cagtcgattg aattaggttc tgagccagtc
    13321 ctcaaaattg aggttttggg caatgtgcag aaactgagtg ccggtgccgc agatgtctct
    13381 attacaggag atgccggcag tgttgacaca gttagcggtg atgtctctat taagggaaat
    13441 gttgcctctt atgtgaaaac cgtgagtggt gatgttcgct gtcgtgctat taccggttcg
    13501 gtggaaaccg tctccggtga tatttatcgc tgatatttac tcatcttatt atttaccacc
    13561 ctattgggaa gcaattttcc caaggtgggc agattgtttc ccatttttat tttgaatttg
    13621 gagaaacatg atgaccacta ttaacctttc acaacaagaa cgtgagttag ttgaatttgt
    13681 ctggaataac cgtaatacac cttggttttt tcactgtagt gtatcgaatg tgtcgagaaa
    13741 taatacctct cggcaaattg ctgtatgtgt cattaaggat aatcaattga ttagccttga
    13801 tgaattgata gcaaaattat gtggttataa actcagacaa aacggattat acgttactgt
    13861 tcataatatg gatgctgttt ttgatacctt atatcgcttt atgtgcaagc taaatgatga
    13921 gatggaggca aatgaaaatg tttgccctta tttatcatta gctcactatg aagtgttttg
    13981 attggtatca gaactatcca ccctgtcggg aaacaatttt tccgataggg cagattgttt
    14041 cccactttta ttttgaattt ggagaaacat aatgatagac accttttttg accttgacga
    14101 cacctcatgc tatttaggta actgggagga tatactgaaa gaatatgatg attgtctttc
    14161 agttgaagat ttttggcatt ccgctaaaga atttgatacc gtacctcatt ttggcaacct
    14221 ataccaggag cgtgtcatcc ttaagttgat tgctcgattc tgtattgagc tgaatattga
//
LOCUS       DANLRW010000066        14203 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.066, whole genome shotgun sequence.
ACCESSION   DANLRW010000066 DANLRW010000000
VERSION     DANLRW010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14203
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.066"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            6..227
                     /locus_tag="PXA71_001650"
     CDS             6..227
                     /locus_tag="PXA71_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1414 domain-containing protein"
                     /protein_id="HDL5105748.1"
                     /translation="MATKSKYHTKQFEQLLADLIATIEKHKAPVDLSLMALGNMITNI
                     LIENIQSPAQREALADAFADALKQSLKTK"
     gene            232..1965
                     /locus_tag="PXA71_001651"
     CDS             232..1965
                     /locus_tag="PXA71_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3413 domain-containing protein"
                     /protein_id="HDL5105749.1"
                     /translation="MFARLRSLLPTNSRQYREETSQKITWGHWFALFNIVLALLISSR
                     YAFNADWPNTLVGKLYFFVSLFGHFSFVVFAGFLLILFPLSFIVKNHRTYRGLSVILA
                     TIGQTVLLVDTEVFKQFYLHLSPLVWDLLVNPEEGELTRKWQLLFVPMPLLLLAEMLY
                     SRWCWQKLRSFSRQKWGKYVALFFVISFTATHLIYAWADMNAYRPITAQRANYPLSYP
                     MTARNFLEKHGFIDRVEFNQEIEESGRLDTFYLNYPKSPLIATKTPSTNILLINLSGL
                     SKQIINAETMPKLTEISQQSHRFMQHYSSGDSASAGALGLFYSLSGKYLDSVLADKTV
                     SPLIEIARKSDYQLGLFSHNGFADPIYHQAIFSGILLPTAHSNVGAIGQWKNWISSRS
                     LENPFFSYLDLRMPFAHTAQEQAKLLDWQFAEIWQHLTQNALLANTLVIITADISNEV
                     GAENSFDKQHIQVPMMFYWQGESKEYHFLSSHLDIMPTLLSQFFGVQNPLNDYAQGMD
                     LSTQNQRLWVSSSNHKWNVAIMPNGDQYQIDRKGNFKHFNSNGEHEKDARPPLALFLQ
                     MIQQSNQFIEK"
     gene            complement(2032..2733)
                     /locus_tag="PXA71_001652"
     CDS             complement(2032..2733)
                     /locus_tag="PXA71_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5105750.1"
                     /translation="MIGQALGWRATFGIIGIIALIVLMMIWRLLPYLPSKNAGSIKSL
                     PLLFKRPMLIGIYLLVALIVSGHFTAYSYIEPFMIKISSVSVENTTFILLVFGLAGVV
                     ASFLFGRLYGKAPNKFILSGIAIIMCSQLCLLFLSDSTVAMFMVAFVWGIGITGMSIA
                     LQMKVLELAPDATDVATAIFSGTYNLGIGGGALLGSIAIQQLGLANIGFAGGSIAFVA
                     MVWFVFVSLKYRQLR"
     gene            complement(2730..3110)
                     /locus_tag="PXA71_001653"
     CDS             complement(2730..3110)
                     /locus_tag="PXA71_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5105751.1"
                     /translation="METLAIFLFSEIWKFDFVFTFIFKILKINVFFSDLINMKLARKA
                     QRRLSFLRVFSLAFAAFIVNTTEFIPIALLSDIASSFQMEPSSAGIMMTVYAWVVFLL
                     SLPLMLLTANMERKRLLLMLFMGE"
     gene            complement(3152..7612)
                     /gene="mukB"
                     /locus_tag="PXA71_001654"
     CDS             complement(3152..7612)
                     /gene="mukB"
                     /locus_tag="PXA71_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HDL5105752.1"
                     /translation="MIDTTELQNNPQIAPLARPNDVQRGKFLSLTLINWNGFFARTFD
                     LDDLVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTAGSRDKGLYGKLK
                     AGVCYAVLESFNSRGQRIITGVRLQQIVGRDKKVDIRSFSLQNIPQEQSIISLLTEQV
                     GNKARVLALNELKDQFENSEVQFKQYHSITDYHSFMFDLGVIPKRLRSAADRSKFYKL
                     IEASLYGGISSVITKSLRDYLLPENTGVRQAFQDMESALRENRMTLEAIKVTQSDRDM
                     FKRLITESTNYVSADYMRNANERRGNVQQALEQRKEWYAAKSKILLEQQRFVEFSRES
                     ADIAEAELALEADYNSANDHLNLVMNALRHQEKIERYQDEVEELNIKLEEQQEALEEI
                     AEIAENAQARADEADDHVEELRSQMADYQQALDAQQTRALQYQQAVNALEKAKQLTGL
                     VNLDLNNIEDYHAEFVAQAEDLTDQVFELEQRLSVSDMAKTQFEKAFELVCKISGEID
                     RLQAWEEARALLSAFPEQKMQAQQAVSLRQKLNDLEQRLQQQQNAQRLVAEFNQKSQQ
                     QLNSAEELDAYFEEQQARLEDLEAELSDFVEQRSTQRQQREQLNQQYQQLAKNAPAWH
                     TAQSALTRLEEQCGEKFEASQSVMQFMQNMLSKEREATLARDELARKEQMLDEQINRL
                     SQPDGSEDARLNQLAERFGGVLLSELYDDVSIEDAPYFSALYGEARHAIVVRDLEAVK
                     TQLEKLDDCPSDLYLIEGDPSAFDDAVFSAEELGEGVVVKVSDRQWRYSKFPEVPLFG
                     RAAREKHLATLKAERDETAEKHAERAFDVQKCQRLHQHLSQFIGTHLNLAFQENPEML
                     MQEIAAERAEIERELAQSAGNEQQLRHQLESVKAQLQMLNKILPLANLLADETLEARA
                     EECREQLELAEEDEMFIRQFGATLSQLEPIAAALKSDPALFEQLEADYRRSVAEQKVL
                     QQKVFSLADVMNRRLHFSYQETVGTEGSALTEQLRQRLENAQREREQARDQLRQAQAQ
                     LSQYNQVLTGLRSSYEAKNQMLQELIREIDDLGVRGDSGAEERARFRRDELQQRLSQQ
                     RSRKGYLDKQIAVIEAEMDNLNRTLRKAERDYHTQRELVVQAKASWCIVQRLSRNSDV
                     EKRLNRRELAYQSAEELRSISDKALGALRTAVADNEYLRDSLRASEDSRKPENKVAFF
                     IAVYQHLRERIRQDIIKTDDPIDAIEQMEIELSRLTNELTGREKKLAISAESVANILR
                     KTIQREQQRILQLNQGLQNIAFGQVKGVRLVVNIRDTHAILLNALSNNREEHKDLFDS
                     QKLSFSEALAMLYKRVNPHIEMGQRTPQTIGEELLDYRNYLDLEVETFRGADGWMRAE
                     SSALSTGEAIGTGMSILLMVVQSWEEEARRMRAKDILPARLLFLDEAARLDATSINTL
                     FELCERLDMQLLIAAPENISPERGTTYKLVRKITNNQEYVHVVGLKGFAK"
     gene            complement(7788..8504)
                     /gene="mukE"
                     /locus_tag="PXA71_001655"
     CDS             complement(7788..8504)
                     /gene="mukE"
                     /locus_tag="PXA71_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HDL5105753.1"
                     /translation="MTENIQDFISPKLALAIANPIFPELDSQLRAGRHINTEQLDQHV
                     FLMDFQAELESFYRRYHVELIRAPEGFFYLRPKASTLIARSAMSEMEMLVGKVLCYLY
                     LSPERLAQQGIFSQDDVYEELLSLADESKLLKAVNPRSTGSDLDRAKLAEKAGGALRR
                     LARIGIITRVGEQNSKKFVISESVFRFGADVRTGDDPREAQLRLIRDGEATTPALLNE
                     QAVEIDENIADEAPFDGENE"
     gene            complement(8553..9896)
                     /gene="mukF"
                     /locus_tag="PXA71_001656"
     CDS             complement(8553..9896)
                     /gene="mukF"
                     /locus_tag="PXA71_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HDL5105754.1"
                     /translation="MQNELAQTIPELISWTKDREFSLSLSSDRLAFLLAISIYNQEQT
                     DGELLESDLIDLFRYVSNSFEQSDATFTQRANNAINDLVRQRLLNRFSSEFTEGLAIY
                     RVTPLGVGISNYYVRQREFSTLRLSIQLSIVADEIQRASVAAEEGIEQAQDERFWRNN
                     VFAPLKYSVAEIFDSIDLSQRIMDENQHQIRERIAELLSQNWHEAIMSCEQLLDETSG
                     NLRELQDTLNAAGDKLQAQLLRIQSCLMARNDLDFIDQLIVNLQNKLDRIISWGQQAI
                     DLWIGYDRHVHKFIRTAIDMDKNRVFGQRLRQSIQDYYNSPWLLYTAKADSLLDLRDD
                     EAMLNEAESVGELPSELEYESLSDVQEQIVSAMQAHLAPFRAEGKPIDLGVILREQLA
                     RFPESRHFDVARIIVDQAVKLGMASQDSQAVYPQWQPINEQGAEVQANVIDQYNK"
     gene            complement(10161..11048)
                     /gene="galU"
                     /locus_tag="PXA71_001657"
     CDS             complement(10161..11048)
                     /gene="galU"
                     /locus_tag="PXA71_001657"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDL5105755.1"
                     /translation="MKVIIPVAGLGTRMLPATKAIPKEMLILADKPLIQYIVNECVAA
                     GFKEIVLVTHSSKNAIENHFDTSFELETMLEKRVKRQLLDDVRSIVPKDVTLIHVRQG
                     QAKGLGHAVLCGRTVVGDEPFAVVLPDVLLGEFTANQKTENLAAMVKRFQETGYSQIM
                     VAPVPMENVSSYGVADCHGVDIPLGGAAPIAKMVEKPSIEEAPSNLAVVGRYVFSSNI
                     WNLLEKTPVGVGDEIQLTDAIDMLIHQETVEAFHMTGRSFDCGYKVGYMKAFVEYSLN
                     HDKCGKEFKAFIKELAKSL"
     gene            complement(11184..11369)
                     /gene="csrA"
                     /locus_tag="PXA71_001658"
     CDS             complement(11184..11369)
                     /gene="csrA"
                     /locus_tag="PXA71_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HDL5105756.1"
                     /translation="MLILTRKIGEVLLVGDDVEITVLSIRGNQVKLGVNAPKEISVHR
                     REIYERIKASVEEENAE"
     gene            complement(11459..14086)
                     /gene="alaS"
                     /locus_tag="PXA71_001659"
     CDS             complement(11459..14086)
                     /gene="alaS"
                     /locus_tag="PXA71_001659"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDL5105757.1"
                     /translation="MKTTSDIRQSFLEFFQTKGHTIVPSSSLVPENDPTLLFTNAGMN
                     QFKDVFLGLEKRPYSRATTAQRCVRAGGKHNDLENVGYTARHHTFFEMMGNFSFGDYF
                     KQDAIKFGWEFLTSPQWLGLPKEKLYVTVYETDDEAYDIWHKEVGVPSEHIIRIGDNK
                     GAPYASDNFWAMGDTGPCGPCTEIFYDHGPEHWGGLPGSPEEDGDRYIEVWNIVFMQF
                     NRLADGTMEKLPKPSVDTGMGLERMTAVMQHVNSNYETDIFQTLIKEVATLLNVKDLD
                     NKSLRVVADHIRACSYLIADGVLPSNEGRGYVLRRIIRRAVRHGNILGAKEAFFYKLV
                     PTLATVMGQAGEVLTQKQAHIQKTLKAEEEQFARTLERGLNLLEEALAKVENNTLSGE
                     VAFKLYDTYGFPLDLTADVCRERDIKIDEDGFNAEMTAQRERAKASSSFGTDYNNVIK
                     VDSKTCFSGYTETSLNDATVIGLFSNGKSVESIQSGENAVVILDKTPFYAEMGGQVGD
                     SGQISAEICNFEVVDTQKYGQVFGHIGQLTSGSLSVGDKVNTIVDRERRHAITLNHSA
                     THLLHSALRQVLGDHVAQKGSLVSENILRFDISQPEAITKSQLEEVERIVNAKVRENI
                     QVIIEEMDIESAKAKGAMALFGEKYGEVVRVVEMSDFSIELCGGTHVKQTGDIGLFKI
                     TSEGAVAAGVRRIEAVTGENAIAWLHTLQQAVQQSAELLKADSHSFVEKIVQLQEKAK
                     RTEKELQQLKDKLAAQAGSDLAKQATQINGVNVVIQQLENVEPKALRTMVDDLKNQLG
                     SAVVVFATTAEDKVNLIVGVTKDLTDKVNAGQLVGAMAEKVGGKGGGRPDMAMAGGSE
                     PQHLLQALSLAQEWITAKL"
BASE COUNT         3978 a         3285 c         2689 g         4251 t
ORIGIN      
        1 tcaatatggc aacgaaatct aaataccaca ccaaacaatt tgagcagcta ttggctgacc
       61 tcatcgccac catagaaaag cataaagcac cggtggattt atcgttaatg gcattaggca
      121 atatgataac taacatttta attgaaaata ttcaaagccc ggcacaaaga gaagctctcg
      181 ctgatgcctt tgccgatgca ttaaaacaat cactaaaaac caaataagat gatgtttgca
      241 cgcctacgca gtttattgcc gaccaattct cgccaatatc gagaagaaac ctcacagaaa
      301 atcacgtggg ggcattggtt tgcactattt aatattgtgt tggcactact catttcctct
      361 cgttacgcat ttaatgcaga ctggccgaac acgcttgtag gcaaacttta tttctttgtc
      421 agcctgttcg ggcatttcag ctttgtggtc tttgcaggat ttctattaat tctgtttccg
      481 ctcagtttta ttgttaagaa tcatcgcacc tatcgtgggc tttccgtgat tttagccacc
      541 atcgggcaaa ccgtgttatt ggtggatact gaagtcttca agcaatttta tctgcattta
      601 tcaccgcttg tatgggatct gttagttaat ccggaagaag gggaactgac ccgtaaatgg
      661 caactgctgt ttgtaccaat gccactcctt ttgctggcag aaatgctcta ctctcgctgg
      721 tgctggcaga aactgcgtag ttttagccgc caaaaatggg gcaaatatgt cgctctcttt
      781 ttcgtgatca gctttaccgc tactcattta atctatgcgt gggcagatat gaatgcctac
      841 cgcccgatta ccgctcaacg agcaaactac ccactttctt acccgatgac ggctcgtaat
      901 ttcttagaaa aacacggttt tattgaccga gtagaattta atcaagaaat tgaagaaagt
      961 ggcagactag atactttcta tctgaattat ccaaaatctc ccttgattgc gaccaaaacg
     1021 ccctcaacta atattttact gattaattta tcaggtttat ctaaacagat aataaatgcc
     1081 gaaacaatgc ctaagctgac agaaatcagc caacaaagcc accgctttat gcagcattac
     1141 agtagtggtg attcagcctc tgccggtgca ttaggtctat tttacagttt aagcggtaaa
     1201 tatttggatt ccgttttagc cgataaaacc gtgtcaccgc ttatcgaaat cgctagaaaa
     1261 tcggactatc aattagggct gttttcacat aatggttttg ccgacccgat ttatcatcag
     1321 gcgatcttct ctggtatttt attgcctacg gcgcacagta atgtaggggc gattgggcaa
     1381 tggaaaaact ggatcagctc tcgctcattg gaaaatccgt tctttagcta tttagactta
     1441 agaatgccct tcgcccacac cgctcaagag caggcaaaat tattagattg gcaattcgct
     1501 gaaatctggc aacatttgac ccaaaatgca ctattggcga atacgctggt aatcattacc
     1561 gccgatatta gtaatgaagt tggagcagaa aatagcttcg ataaacaaca cattcaagtg
     1621 ccgatgatgt tctactggca aggcgaaagc aaagagtacc atttcctttc aagccattta
     1681 gatattatgc caaccttact gagccaattc ttcggcgtgc aaaatccgct gaatgattat
     1741 gcacaaggta tggatttaag cacccagaac caacgtttat gggtatccag ttctaatcac
     1801 aaatggaatg tggcgattat gccgaatggc gatcaatatc aaattgatcg taaaggcaac
     1861 tttaagcact ttaacagcaa tggcgaacac gagaaagatg ctcgaccacc attagcgttg
     1921 ttcttacaaa tgattcaaca aagcaatcaa tttattgaaa agtaatgttc aacaagcggt
     1981 catttttgca ggaaaatttg caaaatttca gcaaaatatg accgcttgtc actatctgag
     2041 ctgtctatat ttcaagctaa caaatacaaa ccaaaccatt gctacaaaag caatactccc
     2101 accggcaaat ccgatattgg ctaatcccag ttgctgaata gcgatgctcc ccagtaatgc
     2161 tccaccgcca atgcctaaat tataagtgcc ggaaaaaatt gcagttgcga catcagtcgc
     2221 atcaggggca agttcaagca ccttcatttg caacgcaatg ctcattccgg taatgccaat
     2281 tccccagaca aaagcgacca taaacattgc cactgttgag tcactcaaaa acagtaaaca
     2341 aagctggctg cacataataa tggcgatccc gcttaagata aatttattcg gggctttgcc
     2401 atataaccga ccaaataaaa aacttgccac cacacctgcc aagccaaaaa ccagcaaaat
     2461 aaaggtggtg ttttccacac tcaccgaact gattttaatc ataaacggct caatatagct
     2521 gtaagcggta aaatgtcctg aaacgatcaa tgccaccagc aaataaatgc cgattaacat
     2581 cgggcgttta aataacaaag gcaaactttt tatcgagcct gcatttttgc ttggtaaata
     2641 aggcagcaac cgccaaatca tcattagcac aatcaaagcg ataatcccaa taatgccaaa
     2701 ggttgcccgc cagcctaagg cttgcccgat cattcgccca taaataacat cagcaacagc
     2761 cgttttcttt ccatattcgc cgtgagtaac atcaacggta acgataataa aaataccacc
     2821 cacgcataaa ccgtcatcat aatgcctgcc gatgaaggct ccatttggaa actgcttgca
     2881 atgtctgaaa gcaatgcaat aggaataaat tcggtggtgt ttactataaa agccgcaaag
     2941 gcaagactaa atactctaag gaacgataat ctccgttgag cttttcgagc aagtttcata
     3001 ttaattaaat ccgagaaaaa cacatttatt ttcaaaattt taaaaataaa tgtaaaaaca
     3061 aaatcaaatt tccaaatttc tgaaaataaa aagattgcca atgtttccat caacaatctt
     3121 tttatacata tttagattaa agtgctaagt tttatttagc aaagcctttt aaaccaacaa
     3181 cgtgaacata ctcttggtta ttggtgattt tacgcaccaa tttataagtt gtgcctcgtt
     3241 cagggctaat attttcaggg gctgcaatta ataactgcat atccaaacgt tcgcagagtt
     3301 caaatagcgt attaattgag gtagcatcta atcgagccgc ttcatctaag aacaataagc
     3361 gagccggtag aatatctttg gcacgcatac ggcgagcttc ttcttcccag ctttgaacta
     3421 ccattaagag aatcgacata cctgtaccga tcgcctcacc ggtcgataat gcactacttt
     3481 ctgcacgcat ccagccgtct gcaccacgga aggtttccac ttctaaatct aagtagttac
     3541 ggtaatccaa taactcttca ccaatggtct gtggtgtacg ttgccccatc tcaatatgag
     3601 ggttcacccg tttatacaac atcgctaagg cttcggagaa gctcagtttt tggctgtcga
     3661 ataaatcttt gtgttcctca cgattattgg ataacgcatt gagtaaaata gcgtgcgtat
     3721 ctcggatatt caccaccaaa cgcacccctt ttacctgacc gaatgcaata ttttgtaaac
     3781 cttggttcag ttgcaaaatg cgttgttgtt cacgctgaat ggttttacgt aaaatatttg
     3841 ccacactttc cgcactgatc gccagttttt tctcacgacc ggttaattca ttggttaagc
     3901 gtgaaagctc gatttccatc tgctcaatcg catcaatcgg atcatcggtt ttgataatgt
     3961 cttggcgaat ccgctcacgc aaatgctgat aaaccgcaat aaagaacgcc actttgtttt
     4021 ccggcttgcg actatcttca gaagcccgca agctatcacg caggtattca ttatccgcca
     4081 cggcggtgcg taatgccccg agagctttat ccgaaatcga acgtaattct tcagccgatt
     4141 gataagccaa ttcacggcga tttaaacgtt tttccacatc gctgttacga gataaacgtt
     4201 gcacaataca ccagctggct tttgcctgca ccaccaattc acgttgtgta tgataatcac
     4261 gttcggcttt acgtaaggtg cggttaaggt tatccatttc cgcctcgatc accgcaattt
     4321 gtttatctaa ataacctttg cgggaacgtt gctggcttaa acgttgttgc aattcatcac
     4381 ggcggaatct ggctcgctct tccgctccgc tatcaccacg cacgcccaaa tcgtcaattt
     4441 cacgaattaa ctcttgtagc atttggtttt tcgcctcata agaactgcgt aagccggtca
     4501 atacttggtt atattgtgaa agttgagctt gagcttgacg cagctgatca cgagcctgtt
     4561 cacgctcacg ttgtgcattt tccaaacgtt ggcgtagctg ttcggttaat gcagagcctt
     4621 ctgtacccac cgtttcttga tagctaaaat ggaggcggcg attcattaca tcagccaagc
     4681 tgaacacttt ttgctgtaac actttttgct cggcaactga acggcggtaa tcggcttcca
     4741 actgttcaaa taaagccgga tcacttttta atgcggctgc aatcggctca agttggctta
     4801 atgttgctcc aaattggcgg ataaacattt catcttcttc tgccaattct aattgctcac
     4861 gacattcctc cgctcgtgct tccagcgttt catcggctaa taaattcgca agcggtagaa
     4921 ttttattcaa catttgcaac tgggctttta cgctttctaa ttggtgacgt aattgctgtt
     4981 cgttaccggc tgattgtgcc aattcacgtt caatttctgc ccgttctgcc gcaatctctt
     5041 gcattaacat ttcagggttt tcttggaacg ctaaatttaa gtgcgtgccg ataaattggc
     5101 ttaagtgttg atgtaaacgc tggcatttct gcacatcaaa ggcacgttca gcgtgttttt
     5161 ctgcggtttc atcacgctct gcttttaaag tcgctaaatg tttttcacga gcagcacgtc
     5221 cgaataacgg cacttcaggg aatttagaat aacgccattg gcgatcggag actttcacca
     5281 ccacgccttc gcctaattcc tcggcactaa ataccgcatc gtcaaaggcg gacggatcac
     5341 cttcaattaa ataaagatca cttgggcaat cgtctaattt ctctagctgt gttttaaccg
     5401 cctctaaatc acgcactaca atagcgtggc gagcctcgcc gtataaggcg gagaaataag
     5461 gcgcatcttc aattgataca tcatcatata actcagagag taacactcca ccaaaacgtt
     5521 ctgccaactg gtttaagcgg gcgtcttccg agccgtccgg ctggcttaag cgattaattt
     5581 gctcatcaag catttgttct ttacgagcca attcatcacg agcaagggtg gcttcacgct
     5641 ctttgctcag catattttgc ataaactgca tcactgattg gctggcttca aacttctcgc
     5701 cacattgctc ttctaaacga gtcagagccg attgtgccgt atgccaagcc ggtgcattct
     5761 tcgctaattg ctgatattgt tgattaagct gttcacgttg ttggcgttgg gttgaacgtt
     5821 gttctacaaa gtccgaaagc tctgcctcta aatcttctag gcgagcttgc tgctcttcaa
     5881 aataggcgtc taattcttcc gctgaattga gttgttgttg cgatttttgg ttaaattccg
     5941 ccactaaacg ctgggcattt tgctgttgtt gcaaacgctg ttctaaatcg ttgagttttt
     6001 gacgtaaact caccgcttgc tgagcttgca ttttttgctc agggaaggca gaaagtaacg
     6061 cacgagcctc ttcccacgct tgcaagcggt caatttcacc ggaaattttg caaaccaatt
     6121 caaacgcttt ttcaaattgg gttttcgcca tatccgacac gcttaaacgt tgttccagct
     6181 caaatacttg atcggtaaga tcttcggctt gagccacaaa ttctgcgtgg taatcttcaa
     6241 tattatttaa atctaaattc actaagccgg ttagctgttt ggctttttct aacgcattca
     6301 ccgcttgttg gtattgcaat gcacgagttt gctgtgcatc taaggcttgt tggtaatccg
     6361 ccatttgaga acgcaattct tcaacgtgat catctgcctc atccgcacga gcctgagcat
     6421 tttcggcaat ttccgcaatt tcttccaatg cctcttgctg ttcttccagc ttaatattca
     6481 gctcttcaac ttcgtcttgg tagcgttcga ttttctcttg gtggcgtaac gcattcatca
     6541 ctaaatttag atgatcgttc gcactattgt aatccgcctc taacgccagc tctgcttcgg
     6601 caatatccgc actttcacgg ctaaattcca caaagcgttg ctgttcgagc aaaattttgg
     6661 attttgccgc ataccactct ttgcgttgct ctaaggcttg ttgtacattg ccacggcgtt
     6721 cattcgcatt acgcatataa tccgccgaca cataattggt cgattcggta attaagcgtt
     6781 tgaacatatc ccgatccgat tgcgtgacct taatcgcctc taaggtcata cggttttcac
     6841 gcagagcgga ttccatatct tggaacgctt ggcgaacgcc cgtattttcc ggcaacaagt
     6901 aatcacgcaa ggatttggta atcacacttg aaataccacc ataaagcgag gcttcgatta
     6961 atttgtagaa tttgctacgg tcggctgccg aacgaaggcg ttttgggatt acgcccaaat
     7021 cgaacataaa actgtggtaa tcagtaatcg aatggtactg tttgaattgg acttcgctgt
     7081 tctcaaattg atctttgagt tcatttaacg ccagcactcg agccttattc cccacttgtt
     7141 cggtcagtag gctgataatg ctttgctctt gaggaatatt ctggagcgag aacgaacgaa
     7201 tatcgacttt tttatcccgt ccgacaattt gttgcaaacg cacgccggta ataatccgtt
     7261 gcccacggga attgaatgac tctaacaccg catagcaaac acccgctttt aacttaccgt
     7321 ataagccttt atcacgagaa ccggcggttg agcctgcttc agtcgtatta cggaaattaa
     7381 gcaaggttaa atctgggatc aaggcggtca caaaccctgc cattgtggtg gacttacctg
     7441 ccccgttacc gcctgaaagc gtggtcacta agtcatctaa atcaaaggtt cgagcaaaaa
     7501 aaccgttcca gttaatcagc gttaaagaga gaaatttacc gcgttgtaca tcattcgggc
     7561 gtgcaagcgg tgcaatttga ggattatttt gcaattctgt ggtatcaatc attatgtttt
     7621 ctcactaatt gtcctagcac gctaaagcgt actaggttag gtataggtga gtagctccgc
     7681 tactctaatc gcaacctcag ccttggaggg ctgctttatg cttaacctag ttcggcttta
     7741 ccgtgtctag ggcagactca ttaaatgctg aatctattcg aatgaaatca ctcattttct
     7801 ccgtcaaagg gggcttcatc tgcaatattt tcatctattt caaccgcttg ttcgtttaac
     7861 aacgcagggg ttgtcgcttc accatcacga attaagcgaa gctgtgcctc tcttgggtca
     7921 tcaccggtac gcacatcagc cccaaaacgg aagaccgatt ctgaaatcac aaattttttg
     7981 ctgttttgct cgcctactcg ggtaataatg ccgatacggg ctaatctgcg taacgctccg
     8041 ccggcttttt ctgccagctt ggcacggtct aaatcggaac cggtcgaacg tgggtttacc
     8101 gcttttaata atttgctttc atcggcaaga ctgagtaatt cttcatacac atcatcttgg
     8161 ctgaaaatcc cctgctgagc caaacgttcc ggacttaaat agaggtagca caacacctta
     8221 cccactaaca tttccatttc tgacattgcc gaacgggcaa ttagtgtcga ggctttcggg
     8281 cgtaggtaga aaaagccttc cggtgctcga atcaactcaa cgtgataacg gcggtaaaaa
     8341 ctctctagtt ccgcttgaaa atccatcaaa aagacgtgtt ggtcaagctg ctcggtattg
     8401 atatggcgac cggctcgtaa ttggctgtct agctccggaa aaatcgggtt ggcaatcgca
     8461 agtgccagtt tcggggaaat gaaatcttgg atattctctg tcattgtcat tctcttcaat
     8521 tttgcaaaat tctgggtaaa aacgaccgct tgttatttat tgtattggtc gataacattc
     8581 gcctgcactt ccgccccttg ctcgttaatc ggctgccatt gtgggtaaac ggcttggcta
     8641 tcttggcttg ccatacctaa cttaacagct tgatcgacaa taatacgagc cacgtcaaaa
     8701 tggcgggatt ccgggaatcg ggcaagctgt tcacgcaaga taacgcctaa atctatcggt
     8761 ttaccttcag cacggaacgg cgctaaatga gcttgcattg ccgaaacaat ttgctcttgc
     8821 acatctgaaa gcgactcata ctctaactca cttggcaact cgcccaccga ttctgcctca
     8881 tttaacattg cttcatcatc acgcaagtcc agtaacgaat cggcttttgc agtataaagc
     8941 aaccaagggc tgttgtaata atcttgaatc gattggcgta accgttgccc gaatacacgg
     9001 tttttgtcca tatcaatcgc tgtacgaata aatttatgca catggcggtc atagccgatc
     9061 caaagatcga tagcttgttg tccccagctg ataatacggt ctaacttatt ttgtagattc
     9121 acaatcagct gatcgataaa atccaaatca ttacgagcca tcaggcaact ttgaatccgc
     9181 aataattgag cttgcagttt atcaccagcg gcatttaagg tatcttgcaa ctcacgcaaa
     9241 ttccccgagg tttcgtctaa caattgctca caactcataa ttgcttcgtg ccagttttgg
     9301 ctaagcagtt cggctattcg ttcacggatt tggtgctgat tttcgtccat aatccgttgt
     9361 gaaagatcga tgctgtcaaa gatttccgcc accgaatatt tcaatggggc aaacacatta
     9421 tttcgccaaa aacgttcatc ttgtgcctgc tctattccct cttccgctgc tactgaagct
     9481 cgctgaattt catctgccac aatcgaaagt tgaatcgata aacgcagggt agaaaattcc
     9541 cgctggcgaa cgtaataatt tgaaattccc acccctaacg gcgtaacacg ataaatcgcc
     9601 aaaccttccg taaattcgct actaaaacgg tttaacaacc gttgtctgac taaatcatta
     9661 atcgcattat tggcacgctg ggtaaaagtg gcatcagatt gctcaaacga atttgaaaca
     9721 taacggaaaa gatcaataag atcactttct aacaattcac catctgtctg ttcttggtta
     9781 taaatagaga tagcaagtag aaacgctaag cggtcggaag aaagcgaaag tgaaaattca
     9841 cgatctttcg tccaagagat gagttctgga atagtctgtg ccaattcgtt ctgcatacgg
     9901 gcttaatctt taatttctat acaaaaatgg tatttattgt aactgaatgt aatcaaaatg
     9961 ggaatggata aaacgcagac aagagaaatg aacaatataa gcggtcaaat atgggtgatt
    10021 ttttgcaaaa agtattttaa aggtaaatga atccgaaaat ttattatcac tacgctaatt
    10081 tatgatacca taaatagaaa agactggatc caatagaata tcagacacag ccccttagat
    10141 catagtctaa actctaaggc ttagagtgat ttagctaact ctttaataaa tgctttaaat
    10201 tcttttccgc atttgtcatg atttaaacta tattctacaa atgctttcat atagccgact
    10261 ttataaccac aatcaaatga gcgccctgtc atatgaaaag cttcaaccgt ttcttggtga
    10321 atcaacatat caattgcatc cgtcagctgg atttcatcac ctacgcctac tggcgttttt
    10381 tctaataaat tccaaatatt tgaggaaaat acataacgtc ctactaccgc taaattagaa
    10441 ggcgcctctt caatacttgg tttttcaacc attttcgcaa taggcgctgc ccccccgaga
    10501 gggatatcta caccatggca gtcagcaacc ccatagctac ttacattttc cattggaacc
    10561 ggcgcaacca taatttggct atatccggtt tcttggaaac gcttcaccat cgcagctaaa
    10621 ttttccgttt tttggtttgc tgtaaattca ccaagtaata catctggtaa tacaaccgca
    10681 aacggttcat cgccaaccac tgttcgtcca catagaaccg catgacctaa acctttggct
    10741 tgcccttggc gaacgtgaat taaggtaaca tcttttggta caatagaacg tacatcatct
    10801 aataattgac gttttactcg tttctccagc atcgtttcca attcaaaaga ggtatcaaaa
    10861 tggttttcga tagcattctt tgaagagtga gtaaccaata caatttcttt aaaacctgca
    10921 gccacacatt catttacaat gtattgaata agaggtttat ctgcaaggat aagcatttct
    10981 tttggaatag ctttggttgc gggtaacatg cgcgttccca atccagcaac aggaataatg
    11041 actttcattt ggaatccttt gatgacttaa catattagat ataactgaaa taaaccgctt
    11101 agacataaca ggcggtcaat tttcagaaaa ttttgcattg cctgcttcgc tgttatcatc
    11161 tagcagcttt acagttaaaa tgcttattcc gcattttcct cttctactga ggcttttatt
    11221 ctttcataaa tctctcggcg gtgtacagag atttcttttg gtgcattcac acctaattta
    11281 acttgatttc ctcggatgct gagtaccgta atctcaacat catctcctac gagtaaaact
    11341 tccccaatct tacgagttag aataagcata attgtctcct aaaaagtgaa aaactctata
    11401 aatacttaaa tatagagtaa agttttaaag gcgagttcag ctcgccttgt tattattttt
    11461 aaagttttgc tgtaatccat tcttgagcaa gtgacaatgc ttgcaataaa tgttgtggtt
    11521 ctgagcctcc ggccattgcc atatcaggac gtccgccccc tttacctccc actttttcag
    11581 ccattgcacc aactaattga ccagcattga ctttatcggt taaatctttg gtcacaccta
    11641 caatcaaatt gactttatct tccgccgtag tcgcaaatac aacaactgca ctgcctaatt
    11701 gattttttag gtcatcaacc atcgttctca atgcttttgg ttcaacattc tctaattgtt
    11761 gaatcactac attcacgcca ttgatttggg tagcttgttt ggctaaatct gaacctgctt
    11821 gtgctgcaag tttatctttt agctgttgaa gctctttttc tgtacgttta gccttctctt
    11881 gtaattgaac aattttctca acgaatgaat gactgtctgc ttttaacaat tcagcacttt
    11941 gttgaacggc ttgttgtaag gtatgcaacc aagcaatcgc attttcacca gtgacagcct
    12001 ctatacggcg tacacctgct gctaccgcac cttcagaggt aattttgaat aagccaatat
    12061 caccggtttg tttaacgtgt gtgccgccac aaagttcaat cgagaaatct gacatttcca
    12121 ctacacgcac tacttcgcca tatttttcac caaataacgc cattgcacct ttcgcttttg
    12181 cagattcaat atccatttct tcaatgatta cctgaatatt ttcacgcact ttagcattca
    12241 cgatacgttc aacttcttca agttgtgatt tagtaattgc ttccggctga gaaatatcaa
    12301 aacgtaaaat attttctgac actaatgagc ctttttgagc aacgtggtcg cctagcactt
    12361 ggcgtaacgc agaatgcagt aagtgggtag cactgtggtt taatgtaata gcatgacgac
    12421 gctctctatc tacgatcgta ttaactttgt cgccaacaga aagtgagccg gaagttaatt
    12481 gcccaatatg cccgaatact tgaccatatt tttgcgtatc tactacctca aaattgcaaa
    12541 tttctgcgga aatttgaccg ctatctccca cttgtccgcc catttctgca tagaatgggg
    12601 ttttatctaa aatcactacc gcattttcac ccgattgaat agactcaacc gattttccat
    12661 tactaaataa cccaattaca gtagcatcat ttaagctggt ttcagtatat ccactaaagc
    12721 atgttttact gtccacttta atcacattgt tataatctgt gccaaagcta ctgctggctt
    12781 tcgcacgctc acgttgtgcg gtcatttctg cattgaagcc gtcttcgtca attttaatat
    12841 cacgttcacg gcaaacatct gcggttaaat ctaacgggaa gccataagta tcataaagtt
    12901 tgaacgcaac ttcgccagat aaggtgttat tttcaacctt cgctaatgct tcttctaata
    12961 aattcaatcc acgctcaaga gtacgggcaa attgctcttc ttctgctttg agtgtctttt
    13021 gaatatgcgc ttgtttttgg gtcagcacct caccagcttg ccccattacc gttgcaagtg
    13081 ttggcaccaa tttatagaaa aaggcttctt ttgcacccaa aatattaccg tgacgaaccg
    13141 cccggcggat aatacggcgt aatacatagc ctcttccttc atttgaaggt aaaacaccat
    13201 cggcaatcag ataggaacaa gcacgaatat ggtctgccac tacacgtaaa gatttattat
    13261 ctaaatcttt cacattaagc aaagtagcga cttctttaat taaagtttgg aaaatatccg
    13321 tttcgtagtt ggagtttacg tgttgcatta ccgcagtcat acgttctaac cccatccctg
    13381 tatctacaga aggcttaggc agtttttcca tcgtaccgtc tgctaaacga ttgaactgca
    13441 taaatacaat attccatacc tcaatatagc ggtcgccatc ttcttctggg ctacccggta
    13501 agccacccca atgttcaggc ccgtgatcat agaaaatctc ggtacaaggg ccacaagggc
    13561 cggtatcgcc catcgcccag aagttatctg aagcataagg tgcgccttta ttatcgccaa
    13621 tgcgaataat atgttccgat ggtacaccta cttctttatg ccaaatatcg taggcttcat
    13681 catcagtttc atacacagtt acatataatt tttcttttgg taagccaagc cattgtggag
    13741 aagttaaaaa ctcccaaccg aatttgattg catcttgctt gaagtaatca ccaaagctga
    13801 aattccccat catttcaaaa aaagtatgat ggcgagcggt ataacctacg ttttctaaat
    13861 cattgtgttt accacctgca cgtacacaac gttgtgccgt agtcgctctg ctataagggc
    13921 gtttttctaa cccaagaaaa acatctttga attggttcat gcccgcattg gtaaataata
    13981 atgtcggatc attctcggga acaagagagc tgcttggaac aatcgtatgt cctttagttt
    14041 ggaaaaactc tagaaaagat tgtctgatat ctgaagttgt tttcattaaa aatcactctt
    14101 tttgtaaata gaagttaaac atttagttat cttgctattt tacacatttt ttatgctatt
    14161 gggggagcta tatgctactt attttttcaa ttaaataatt ttt
//
LOCUS       DANLRW010000067        14162 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.067, whole genome shotgun sequence.
ACCESSION   DANLRW010000067 DANLRW010000000
VERSION     DANLRW010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14162
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.067"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            108..2000
                     /gene="mnmG"
                     /locus_tag="PXA71_001660"
     CDS             108..2000
                     /gene="mnmG"
                     /locus_tag="PXA71_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDL5105758.1"
                     /translation="MIYNQIYDVIVVGGGHAGTEAALAPARMGLKTLILTHNVDTLGQ
                     MSCNPAIGGIGKGHLVKEIDAMGGLMAKATDVAGIQFRTLNNSKGPAVRATRAQADRV
                     LYRNAVRTALENQPNLDIFQQEVVDILVENNRAVGAVTKMGLTFKARAVVLTAGTFLA
                     GKIHIGLDNYAGGRAGDPAATMLADRLRDLNLRVDRLKTGTPPRLDARTINFDVLAKQ
                     HGDEVLPVFSFMGDVSQHPRQIPCYITHTNDQTHDLIRNSLDRSPMYTGIIEGVGPRY
                     CPSIEDKVMRFADRNSHQIYLEPEGLNTIEVYPNGISTSLPFDVQMGIVNSMKGLENT
                     RIIKPGYAIEYDYFDPRDLKPTLETKAIDGLFFAGQINGTTGYEEAGAQGLLAGINAA
                     LQVQGKEAWYPTRDQAYTGVLVDDLCTLGTKEPYRVFTSRAEYRLLLREDNADIRLTP
                     KAHELGLIDEARWVRFNQKMEAIEQERARLKSTWAHLQMPNLDELNALLANPLAREAS
                     GEDLIRRPEMSYEKLTQIALFAPAIEDKQVAEQVEIAIKYQGYIEHQYNEIERHKRHE
                     NTLIPVEFDYDKVESLSNEVRAKLMQHRPVSIGQASRISGITPAAISILLVNLKKQGM
                     LKRGEL"
     gene            2095..2319
                     /locus_tag="PXA71_001661"
     CDS             2095..2319
                     /locus_tag="PXA71_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105759.1"
                     /translation="MIYLRKLGFSPFDHQMFAQPSWYFCNALVHTNYENLRQGVFVTK
                     AYLVMFLENLLFEKSHSLSNRALRINENND"
     gene            2332..2946
                     /gene="rsmG"
                     /locus_tag="PXA71_001662"
     CDS             2332..2946
                     /gene="rsmG"
                     /locus_tag="PXA71_001662"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDL5105760.1"
                     /translation="MLAKLNRLLAQAEINLTDQQKEQLVGFVRLLDKWNKAYNLTSVR
                     NPDEMLVKHILDSLVVSRHLQGETFIDVGTGPGLPGIPLAIANPDKQFVLLDSLGKRI
                     TFIKNALRELGIKNVTPVQSRVEEYTESQFDGVLSRAFASLNDMIDWCYHLPTENGKF
                     YALKGVYDEQEIIEIKQPIQLVEVIKLEVPELVGERHLVVLKKP"
     gene            3214..4662
                     /locus_tag="PXA71_001663"
     CDS             3214..4662
                     /locus_tag="PXA71_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5105761.1"
                     /translation="MNRVTNKADEFAKLSTFERIAYGSGDLAQNLVFGTVGGFLLTYL
                     TTVNGISAVAGATIFLIVKWGNVFWDPFVGAFIDKSKPSAQGKYRPYLLKFGIPLVVL
                     ASLLFLPLESVRGSVIYAFLSYFATAMVYSFVNIPYGSLSASLTRDTDEIAKLTTTRM
                     TMANIANLFVYTLFPLFVQLLAPHAELKNTGFFGIELYLGDYMSAAAGPAWFKVYAVY
                     MVIGFVALMLSYFGTKERIIPTAEETDKVKYSDLVNELKRNRPLQILGLFFLIGFTFM
                     FFGNTVWPFYLKYNIGHSEWIASVGLLGSIPGIFLVFLWPKLRRTIGKKNFFYLFLGI
                     FVLGQLCLWVWQFDSFKYSPTLGYIGRFLQQWGLTSATGFMWALVPEVVTFGEFKSKK
                     RVAGIINALMGLFFKIGLALGGIIPGYINAVYGFNGSLLAQTEEALFGINLSMIWAPI
                     ILAIIAGFVMSRYPLSDTDIDHINEKITAYSK"
     gene            4685..5731
                     /locus_tag="PXA71_001664"
     CDS             4685..5731
                     /locus_tag="PXA71_001664"
                     /inference="COORDINATES: protein motif:HMM:NF016497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 43 protein"
                     /protein_id="HDL5105762.1"
                     /translation="MQIQNPVLPGFNPDPSIVRVGDTYYIATSTFEWFPGVRIHESKD
                     LVHWNLVKNVLDTTTLLDMRGNPSSGGIWAPDLSYAEGKFWLVYTDVKITDGAFKDMT
                     NYLTTAKEIQGPWSAPIKLNGIGFDASLFHDDDGRKYLVQQTWDHREYHHPFDGITLT
                     EFDVATMKLKPETQRTIFEGTEVKLVEGPHIYKINGEYYLFAAEGGTVFTHQEVVARS
                     KTLEAHSFQLAPNTPFITNFDTPNSYLQKQGHGSLVDTPSGEWYYASLTARPWNHATE
                     SATDPRGWSTLGREAAIQKVEFDQDGWPYIVGGHGGKTFVEAPKDAIFTEAPIDHSQH
                     DEFDSSTLDINWNT"
     gene            5734..6372
                     /locus_tag="PXA71_001665"
     CDS             5734..6372
                     /locus_tag="PXA71_001665"
                     /inference="COORDINATES: protein motif:HMM:NF036826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-xylosidase"
                     /protein_id="HDL5105763.1"
                     /translation="MPFSKEMGEVGNGVLKLIGRGSLANTHDLSLIARRWQAFYFDAE
                     TKVKFTPFSYQSMAGLTNYYNHSHWSWIFITKNDQGQQVIEVAENKGGLRNGQYTSYL
                     KDKAIVIPDGTEYVWFKTKVRKETYRYEYSFDGKQWHTIPVELDAAVLSDDYVLRSYG
                     GFFTGAFVGLAAVDYSSYESTAEFSYFDYKELGDKQLTDGSFSWEKSESCFG"
     gene            6391..7371
                     /locus_tag="PXA71_001666"
     CDS             6391..7371
                     /locus_tag="PXA71_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDL5105764.1"
                     /translation="MKQRRFGKTNKMVSEIGLGTWQLGTKWGEPFNHQEAMAILETAY
                     EQGINFIDTADVYNNGQSEKAIGDILKKYPDFFYVVTKCGRALNPHTAEMYTPQAIEK
                     FVDGSLSHLGTEKLDMILLHCPPTLVYRNDEIFTKLEQLKAGGKLIDYGVSIETAEEG
                     LLAMEYDIAAMEVIFNMFRLKPLEQLFPTAQQKNVGIIARVLLASGLLTGRYNACTQF
                     GKDDHRTFNRNGEAFDKGETFSGVDYQLGLQAVEELKALFGTEDLIPYALRWVLMNEA
                     VSTVIPGASKVSQVITNAAVDNFPPLTENEMQKVEDIYNRLIRPSVHHLW"
     gene            complement(7433..8773)
                     /locus_tag="PXA71_001667"
     CDS             complement(7433..8773)
                     /locus_tag="PXA71_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5105765.1"
                     /translation="MFSFLKASPPAEQKVEASRVDAEYRKLRWQVFAGVFIGYAAYYL
                     IRKNFSLAMPYLIDEYGFTKADLGTVGVALSLAYGFSKFIMGNVSDRSNPKYFITIGL
                     LGSAIVSLVFGLVPGVLSSIPIMIILAALNGWFQGMGYPPGAKTMTNWFSTSERGVWW
                     SWWNVSHNLGGGLIGPLAILGLSIFGVWQSLFYLPALIAIVLAFVMFYLMRDTPESQG
                     LPPIDEYKGEKVVEKVESAHTLSSKDIFYKYILNNKFLWAIAIANVFVYFIRYGIIDW
                     APTYLKEVKHFSVDKQSWAYFLYEYAGIFGMLASGYLSDKVFKGHRAPPMLLFLAGVL
                     IAIVVYWKNPAGNPLIDNICLVAIGFLIYGPVMMIGLQAADLVPRVATGTATGLTGLF
                     GYLLGSASAGYVMGKLVDMFGWDGGFYALILSCFLAFAFIALTLFKKTSKQLEV"
     gene            complement(8963..10036)
                     /gene="glpQ"
                     /locus_tag="PXA71_001668"
     CDS             complement(8963..10036)
                     /gene="glpQ"
                     /locus_tag="PXA71_001668"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDL5105766.1"
                     /translation="MKFKFKTLVAALALSATALGAYAQQSDKLVIAHRGASGYLPEHT
                     LESKALAFGQQADYLEQDLAMTKDNRLIVIHDHFLDGLTDVAKKFPERKRADGRYYVV
                     DFTLDEIKTLEMTENFEVKDGKQAQVYPNRFPMWQSHFTIHTLEEELEFIQGLEKSTG
                     KKIGIYPEIKAPWLHHKEGKDIALETLKVLKKYGYDSKTSPIYLQTFDFNELKRIKTE
                     LLPKLGMDVKLVQLVAYTDWHETEEKDKNGNWVNYDYDWMFKDGAMAEVAKYADGVGP
                     GWYMLVDKEKSKVGNIVYTPLVKELAKYKMELHPYTVRKDALPDFFQNVDEMYDALLN
                     KAGATGVFTDFPDTGVEFLKKQK"
     gene            complement(10106..11551)
                     /gene="glpT"
                     /locus_tag="PXA71_001669"
     CDS             complement(10106..11551)
                     /gene="glpT"
                     /locus_tag="PXA71_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HDL5105767.1"
                     /translation="MFGPFKPAPHIAELPADKVDARYKFLRWQVFAGIFFGYAAYYFV
                     RANFDLAQKGLIEAGMYTKTDLGVIGTAAGLAYGLSKFVMAGMSDRSNPKVFLPTGLL
                     LSGLCMTLMGLMPWATSSILVMWVMIFLNGWFQGMGWPPCGRTMVHWWSKSERGTIVS
                     IWNTAHNLGGMVPGAMVLLASALYFSEYGVEATAKDVWQQALYFPGIAAMIAAIPIYL
                     VMKDTPQSCGLPPVEKWRNDYPDDYNEKTYEHDLSTKEIFVTYVLKNKLLWYIAIANV
                     FVYLIRYGVLKWSPVYLGEVKHFNIKGTAWAYTIYELAAIPGTLLCGWVSDKLFKGKR
                     GLTGFIFMILTTAAVVAFWLNPATPESEIAQYAGHAWYENPYQLMDFIWMTTIGFLIY
                     GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGTVAASAVVGWAADKFGWDGGFYVM
                     IGGGVLAILLTFIVMVEEGKHKAKLEDHYGK"
     gene            11909..13504
                     /locus_tag="PXA71_001670"
     CDS             11909..13504
                     /locus_tag="PXA71_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HDL5105768.1"
                     /translation="MQRHEQLAQVQQTQKWDFIIIGGGASGLGIAVDAASRGYKTLLL
                     ESHDFAKGTSSRSTKLVHGGVRYLANGDVALVREALRERGRLAKNAAHLFKNQSFIIP
                     NYKFKDCVMYRVGLGLYDMLSGNLSLGKTENISKTEAKRRLPTLNDTGLRTGTVYQDG
                     QFDDSRLAVNMAQTVVEHGGTVLNHAKVTSLHKTPQGKIDGVTFYDELNQQEHTVFGT
                     AVINATGVFMNDILSMDHGSTKKFVVPSQGIHLVLDKSFLPSNDALMIPKTSDGRVLF
                     AVPWHEVLVVGTTDTLIENPSYEPIPLEQEVNFILETAAQYLTKKPTRDDVKAVFAGQ
                     RPLAAPEKEGQSTKEVSRSHKVLTDATSGLITITGGKWTTYRQMAEDTVEEALKVHSE
                     LGNKPCVTVNLPIHGNIPAAQVNLQDHLYVYGSDIPQLRALMTETPEYAQKIHPRLDY
                     TVAEVIWAVRHEMAQTVEDVLARRVRLLFTDARAAIDSAAKVAAIMAKELGKDEMWQQ
                     QQVIQFLDVAKHYLLVDYQPQPI"
     gene            complement(13591..13890)
                     /locus_tag="PXA71_001671"
     CDS             complement(13591..13890)
                     /locus_tag="PXA71_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105769.1"
                     /translation="MENIKMEELKLTEKELLVLKGNALRMRFKAETNKTKNEIMQPFK
                     QVKQTGLALVNSPAVKTIALDFLVKRLLSMKGISFSVLGLTAFFLLQQKHKRDDS"
     gene            complement(13877..>14162)
                     /locus_tag="PXA71_001672"
     CDS             complement(13877..>14162)
                     /locus_tag="PXA71_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HDL5105770.1"
                     /translation="LISVLIFILLAFVFLLVSFVSLLFGLDNYLLPEQKVKVFFSIAI
                     IMFIAVTICGMMILSALKKQRHFMQSTLTELKLDIAAFKSALTLKQNGEH"
BASE COUNT         4216 a         2909 c         2975 g         4062 t
ORIGIN      
        1 cgcatttaga tcttaacctc tctaaaaatc tatttcccag atgatccctt tttacgctaa
       61 aatatgcgtt catttttcag cagaatttgt aagatagtag aagagatatg atttacaacc
      121 aaatttacga tgtgatcgtg gtcggcggtg gtcacgccgg cacagaagcg gccctagcac
      181 cggcacgaat gggcttaaaa accctgattt taacccacaa tgttgatacc ttagggcaaa
      241 tgtcgtgcaa cccggctatc ggagggatcg gcaaaggcca tctggttaaa gagatcgatg
      301 cgatgggcgg tttaatggca aaagcaacag acgttgccgg gatccaattc cgtaccctaa
      361 acaactcaaa agggcctgcg gtgcgtgcca cccgtgccca agctgaccgt gtgctttacc
      421 gtaatgcggt acgcactgcg ttagaaaatc aaccaaattt agatattttc cagcaagaag
      481 tagtggatat tttggtggaa aacaaccgtg cagtgggtgc agttaccaaa atgggcttaa
      541 cgtttaaagc ccgtgcggta gttttaaccg ctggtacgtt cttagcgggt aagatccaca
      601 ttgggttgga taactatgca ggtggtcgtg ccggcgatcc tgctgcaaca atgttggcag
      661 atcgtctgcg tgatctgaat ttgcgtgttg atcgccttaa aacaggtaca ccacctcgcc
      721 tcgatgcccg taccatcaac tttgacgtac ttgccaaaca gcacggcgat gaggtgttac
      781 ctgtcttctc ttttatgggc gatgtctcac agcacccacg ccaaattccg tgctacatca
      841 cccacactaa cgatcaaacc cacgatttaa ttcgcaacag tcttgatcgc agcccgatgt
      901 acaccggtat tatcgaaggg gttggtccac gttactgccc gtctattgaa gataaagtaa
      961 tgcgttttgc cgatcgtaat agccaccaga tctaccttga accggaaggc ttaaatacga
     1021 ttgaggttta cccgaacggg atctccacca gcttgccgtt tgatgtgcaa atggggatcg
     1081 tcaactcaat gaaaggcttg gaaaacaccc gcatcatcaa accgggctat gcgattgagt
     1141 acgactactt cgacccgcgt gatttaaaac caacccttga aaccaaagcg attgacggtt
     1201 tattctttgc cggacaaatt aacggcacga ccggttacga agaggcaggt gcgcaaggtt
     1261 tgctggcagg gattaacgca gcgttacagg ttcaaggtaa agaggcgtgg tatccaaccc
     1321 gtgatcaagc ctacaccggc gtgttggtgg acgacctctg tacattaggc accaaagagc
     1381 cataccgtgt gtttacctct cgtgccgaat accgtctgtt gctgcgtgaa gacaatgcgg
     1441 acattcgttt aacaccaaaa gcccacgaac taggattaat tgacgaggca cgttgggtgc
     1501 gtttcaacca aaaaatggaa gcgattgagc aagaaagagc tcgtttgaaa tccacttggg
     1561 cacatttgca aatgccaaat ctggacgaat tgaacgcgtt attggctaat cctttagccc
     1621 gtgaagcaag cggtgaagac ttaatccgcc gtcctgaaat gagttacgaa aagctgaccc
     1681 aaatcgccct atttgcccct gctattgaag acaagcaagt ggcagaacag gtggaaattg
     1741 cgatcaaata tcagggctat attgagcatc aatacaacga aatcgaacgc cataaacgcc
     1801 acgaaaacac cctgattccg gtagagtttg actacgacaa agtcgaaagc ctctccaacg
     1861 aagtgcgagc taaattgatg caacaccgcc ctgtctctat cgggcaggca agccgcattt
     1921 ccggcatcac accggcagcg atttccattc tgttggtgaa tttgaagaag caaggaatgt
     1981 tgaaacgggg tgagctgtaa atactacaag cggttggttt tgcagaaatt tttgcaaaat
     2041 tgaccgcttg tattctttgg agaaggaaat acccgaacta ccgccgtatt tttaatgata
     2101 tatctgcgta aactcggttt ttcgccgttc gatcaccaaa tgtttgccca accttcgtgg
     2161 tatttctgca atgcacttgt tcataccaat tatgaaaatc tgcgacaagg tgtatttgtg
     2221 actaaagcgt atttagtgat gtttcttgaa aatttattgt ttgaaaaaag tcattcgtta
     2281 agtaatcggg cattgcgtat taatgaaaat aatgattaag gaatttgcaa aatgttagct
     2341 aaattaaacc gcttgcttgc tcaagccgaa ataaatttga ccgatcaaca aaaagagcag
     2401 ttagttggtt ttgtgagatt attggataaa tggaataagg cgtataacct cacttccgtt
     2461 cgcaaccctg atgaaatgtt ggttaaacat attttggaca gccttgttgt tagtcgtcat
     2521 ttacaaggcg aaacgtttat tgatgtcggc acggggccgg ggctaccggg cattccgctg
     2581 gcgattgcta accctgataa acagttcgtg ctactagaca gcttaggcaa acgcatcact
     2641 tttatcaaaa atgcgttgcg tgagcttggt attaaaaacg ttaccccagt gcaaagtcga
     2701 gtggaggaat acactgaaag ccagtttgac ggcgtattaa gccgagcctt tgcctcgctt
     2761 aatgatatga tcgactggtg ttatcattta ccgactgaaa acggtaaatt ttatgcatta
     2821 aaaggcgtgt atgatgagca ggaaataatt gaaatcaaac aaccgattca gctagtggaa
     2881 gtgattaagc ttgaagtacc tgagttggta ggagaacggc atttagtagt gttgaaaaag
     2941 ccctaataca ttggaagttt aatgatacaa gcggtcgaat ttgtaaattt ttttgcaaat
     3001 ctgcctgctt gtgttaacta tttttcataa agcatacctg gttaataagg tgtgcttttt
     3061 ttataaccta ttatttcatc tgatttattt ctattttgtg atgtgcttca caaaaacaaa
     3121 aaaacataat gtagtaaaaa atattcgtaa ttgaagccct tatttcttta cctgaaaata
     3181 agcgaactta attatataac gaggaggttc gtaatgaaca gggtaacaaa taaggcagat
     3241 gagtttgcta aactcagtac gtttgaacgt attgcttatg gtagtggcga cttagcccaa
     3301 aatttagttt ttggtacagt tggtggtttc ttactcactt acttaactac tgtaaacggc
     3361 atttctgccg tagcaggagc aacgattttc ttaattgtaa aatggggaaa tgtgttttgg
     3421 gatccgtttg tcggtgcctt tattgacaaa agcaagccct cagcacaggg taaataccgc
     3481 ccgtatttac tgaaatttgg gattcctctt gtggttttag cttcactact atttcttcct
     3541 cttgaatcag tacgtggctc agtgatttat gctttccttt cttattttgc cactgcgatg
     3601 gtttattctt ttgttaatat tccttatggc tcgctttctg cttctcttac tcgagacaca
     3661 gacgaaattg ctaaattaac cacaacccgt atgacaatgg caaatatcgc taatttgttt
     3721 gtttatacct tattcccact ttttgtgcag ttacttgcac cacatgccga attaaaaaac
     3781 accggctttt tcggtattga gctctattta ggtgattata tgtctgctgc tgcaggccct
     3841 gcttggttta aggtttatgc ggtctatatg gtaattggat ttgtggcgtt aatgctctct
     3901 tattttggta ctaaagagcg gattattcca acagcggaag aaacagataa agtcaagtat
     3961 tcagatttag ttaatgaact caaacgcaat cgtccattac agattttagg gttattcttc
     4021 ttaataggtt ttacttttat gttcttcgga aatacggtgt ggccttttta cctaaaatat
     4081 aatattgggc attctgagtg gattgcctcc gtcggtttat taggctctat ccctgggatt
     4141 ttccttgtat tcttatggcc gaaactacgt cgcactatcg gtaaaaagaa ctttttctat
     4201 ctatttttag ggattttcgt tctagggcaa ctttgtctat gggtatggca atttgactcc
     4261 ttcaaatact ctccaacctt aggctatatc ggtcgtttct tacaacaatg gggattaact
     4321 tctgctaccg gttttatgtg ggcgttagtg cctgaggttg ttacctttgg agagtttaag
     4381 tcgaaaaaac gtgtagcagg tattattaat gcgttaatgg gcttgttctt taaaatcggc
     4441 ttggcgttag gcggtattat tccgggttat attaatgcgg tttatggttt taacggctcg
     4501 cttttggctc aaaccgaaga ggctttattt ggtatcaatc tttcaatgat ttgggctcca
     4561 attattttag cgattattgc aggatttgtg atgagtcgct atccgttaag cgatactgat
     4621 attgatcata tcaacgaaaa aattactgct tattccaaat aatttgagta taggagaata
     4681 gattatgcaa attcaaaatc cagttttacc cggtttcaat ccagatccat ctattgtgcg
     4741 tgtgggtgat acttactaca ttgcaacttc tacttttgaa tggtttccgg gagtgagaat
     4801 tcacgaatcg aaagatttag tgcattggaa tttagttaaa aatgtcttag atacaaccac
     4861 gttgttagat atgcgaggca atccctcttc aggtggtatc tgggctcctg atctttctta
     4921 tgcggaaggt aaattttggt tggtttatac cgatgtaaaa attacagacg gtgcattcaa
     4981 agatatgact aactatctaa ctactgccaa agaaattcaa ggtccttggt cagctccgat
     5041 taaattgaat ggtattgggt ttgatgcttc gttgtttcac gatgatgatg ggcgaaaata
     5101 tttagtgcaa cagacttggg atcaccgtga atatcatcac ccctttgacg gtattacgtt
     5161 aacggaattt gatgttgcca caatgaaact caaacctgaa acccagcgta cgatttttga
     5221 aggtacagaa gtgaaattgg tggaaggtcc acatatttat aaaattaatg gcgaatatta
     5281 tctgtttgcg gcggaaggcg gcacagtatt tacgcatcaa gaagtagtgg ctcgttctaa
     5341 aacattggag gctcactctt tccaactggc tccaaataca ccgtttatta ctaattttga
     5401 tacacctaat tcttacctac aaaaacaagg gcacggttca ttagttgata ccccaagtgg
     5461 tgaatggtat tacgcttccc tcacagcaag accttggaat catgcaacag aatccgcaac
     5521 cgatcctcgt ggttggtcaa cattagggcg tgaagccgcc attcaaaaag tagaatttga
     5581 tcaagacggc tggccttata ttgtgggtgg acacggtgga aaaacctttg tagaagcccc
     5641 aaaagatgca atttttaccg aagctcctat tgatcattct caacacgatg agtttgatag
     5701 ctcaacgtta gatattaact ggaacactta agagtgcctt ttagtaaaga gatgggcgaa
     5761 gttggtaatg gtgttttaaa attgattggg cgaggctctc ttgcaaatac acacgattta
     5821 tcgctaatcg cacgccgttg gcaagccttc tattttgatg cggaaaccaa agtgaaattt
     5881 acaccgtttt cttatcaatc tatggcaggt ttaactaact attacaatca ctcacactgg
     5941 tcttggattt tcatcaccaa aaatgatcaa ggacaacagg tgattgaagt tgcagaaaat
     6001 aaaggtggac tcagaaatgg gcaatatact tcttacctta aagataaagc aattgtcatt
     6061 cctgatggaa cggagtatgt ttggtttaag actaaagttc ggaaagaaac ttaccgttat
     6121 gaatattcat tcgatggcaa acaatggcac actattccgg ttgaattaga tgcggcagtg
     6181 ctttcagatg attatgtgtt acgcagttat ggcggtttct tcacaggagc ttttgtcggg
     6241 ctggctgcag tggattactc cagttatgaa tctacagcag aatttagcta ctttgactat
     6301 aaagagttag gcgataagca acttacagac ggctcattct cttgggaaaa atctgaaagt
     6361 tgctttggct aaaatgagga gaatatcaca atgaaacaac gcagatttgg taaaaccaac
     6421 aaaatggtgt cagaaattgg gttaggcact tggcagcttg ggacgaaatg gggtgaaccg
     6481 ttcaatcatc aagaggcgat ggcaatttta gaaaccgctt atgagcaagg catcaatttt
     6541 attgataccg ctgatgtgta taacaacggg caaagcgaga aagccattgg tgatattttg
     6601 aaaaaatacc ctgacttttt ctatgtcgtt accaaatgtg gacgtgcgtt aaacccgcat
     6661 actgctgaaa tgtacacgcc acaggcaatc gaaaaatttg ttgatggtag tttaagccat
     6721 cttggcacgg aaaagttgga tatgattttg ctccactgcc cgccaacgtt ggtttatcgc
     6781 aatgatgaga tttttacgaa attggaacag cttaaagccg gcggaaaatt aatagactac
     6841 ggtgtgagta tcgaaacggc agaggaaggc ttgttggcaa tggagtatga cattgcggca
     6901 atggaagtta tcttcaatat gttccgctta aaaccattgg agcaactctt cccaaccgct
     6961 cagcaaaaaa atgtgggtat tatcgcccgt gtactgttgg caagtggttt gcttacaggc
     7021 agatataatg cctgcaccca atttggcaaa gacgaccacc gcacatttaa ccgcaatggt
     7081 gaagccttcg ataaaggcga aaccttttcg ggtgtggatt atcaactcgg tttacaagcg
     7141 gtggaagaat tgaaagccct attcggcacg gaagatttaa ttccttacgc cctacgttgg
     7201 gtattgatga atgaagctgt gagtacagta atcccgggag caagtaaggt ttcacaagta
     7261 attactaacg cagcggtgga taatttccct ccactcactg aaaatgaaat gcaaaaagtg
     7321 gaagatattt acaaccgctt aattcgccca agtgtgcatc atttgtggta atttatccaa
     7381 cgctataaaa aatggaactc taacttgagt tccatttttg tcaattttag ccttaaacct
     7441 ctaactgttt agaggttttc ttaaacagag tcaatgcaat aaacgcaaag gctaagaaac
     7501 aggaaaggat cagggcatag aaaccaccgt cccagccgaa catatcaacc agtttaccca
     7561 tcacataacc tgcacttgca gagcctaaca agtagccgaa taaaccggtt aaacctgttg
     7621 ctgtaccggt ggcaacacga ggcactaaat ccgctgcttg taaaccgatc atcatcaccg
     7681 gcccgtagat taagaaacca atcgccacta agcagatgtt gtcgattaac gggttgccgg
     7741 ctgggttttt ccagtacacc acaatcgcaa ttaacacacc agcaaggaat aacaacatcg
     7801 gcggcgcacg gtgacctttg aatactttgt cgcttaaata accgcttgca agcataccga
     7861 agataccggc atattcatac aagaagtacg cccagctctg tttatccaca gagaaatgtt
     7921 tcacttcttt taagtaagtc ggtgcccagt cgataatgcc gtagcgaatg aaatagacaa
     7981 acacgttggc aatcgcaatt gcccacagga atttgttgtt taaaatatat ttgtagaaaa
     8041 tgtctttgga agagagtgtg tgggcagact ccactttttc caccactttc tcgcctttgt
     8101 actcatcaat cggcggtaag ccttgagatt ccggcgtatc acgcatcaaa tagaacatca
     8161 caaacgccag tacaatcgca atcaacgccg gcagatagaa cagggattgc cacacgccaa
     8221 aaatagataa gcctaaaatc gccaacggcc cgattaaacc gccgcccaag ttgtgcgaca
     8281 cgttccacca gctccaccac acgccacgtt cagaggttga gaaccagttg gtcatcgttt
     8341 tcgcccccgg cggatagccc attccttgga accagccgtt taacgccgcc aaaatgatca
     8401 taattggaat agacgaaagc acgcccggta ctaaaccgaa caccagactc acaatcgctg
     8461 aaccgagcaa gccgatagtg ataaagtatt tcgggttaga acggtcggaa acgttaccca
     8521 taataaattt actgaagccg taagcgagtg ataatgccac gcccaccgta cctaagtctg
     8581 ctttggtgaa gccatattca tcaatcaaat acggcattgc caacgagaag tttttacgaa
     8641 ttaaataata tgccgcatag ccgataaaga cgcctgcaaa cacttgccaa cgtaatttgc
     8701 gatattccgc atcaactctg ctggcttcca ctttttgttc tgctggtgga gaggctttta
     8761 gaaaggaaaa cattttacta ctcctttaag aatgaaatcc tatggctact ataatctttc
     8821 atttggagca gaaaaagtgg atttttgaaa atttgtgagc aagattaaaa ttattttgag
     8881 cgaaaacgaa aagcggttga atttccttct ttttttgcaa aaaatttgag aaatctaacc
     8941 gcttgtttca cttaaaaatc agctatttct gctttttcaa aaattccacg cccgtatcag
     9001 ggaagtcagt aaagacgcct gttgcacccg ctttattcag cagggcatcg tacatttcat
     9061 cgacattttg gaaaaagtcc ggcagagcat ctttgcgcac ggtgtatggg tgaagttcca
     9121 ttttgtactt cgccaactct ttcactaatg gcgtgtaaac aatgttgccg actttagatt
     9181 tttctttatc caccaacata taccagcccg ggccgacacc atcggcatat tttgccactt
     9241 ctgccatcgc accgtctttg aacatccagt cgtagtcgta attaacccag ttgccgtttt
     9301 tatctttctc ttcggtttcg tgccaatcgg tgtaggcaac taactgcacc aattttacgt
     9361 ccatacccag tttcggtagt aattcggttt tgatccgttt cagctcgttg aaatcgaagg
     9421 tttgcaggta aattggtgag gttttgctgt cgtagccata ttttttcaac actttcaggg
     9481 tttcgagtgc aatgtcttta ccctctttat ggtgcaacca aggggcttta atttcaggat
     9541 agatcccaat ttttttgccg gttgatttct ctaatccttg aataaattcc agctcttctt
     9601 ccaaagtgtg aatggtgaaa tgggactgcc acatcgggaa gcggttcggg taaacttgtg
     9661 cctgcttgcc gtctttcacc tcaaaattct cggtcatttc aagggtttta atctcatcaa
     9721 gggtgaaatc caccacataa taacgaccgt ctgctcgttt acgctcaggg aattttttcg
     9781 ccacatcagt taaaccgtct aaaaagtggt cgtgaatcac aatcaggcgg ttatctttgg
     9841 tcatagcaag atcttgctct aaatagtccg cttgttgccc gaatgctaga gctttagatt
     9901 caagcgtatg ctcaggtaaa taaccgcttg caccacggtg ggcaatcact aatttatcag
     9961 attgttgtgc ataggcaccc aatgctgtcg cggacaatgc taatgcagca accaatgttt
    10021 tgaatttaaa tttcatagaa ttacctcata taatgtaaaa ataaaaggaa gaacaaaaat
    10081 gtccttcctt ttgataagtt atttattatt taccatagtg atcttctaat tttgctttgt
    10141 gcttgccttc ttcaaccatc acaatgaagg ttaagagaat ggctaataca ccaccaccga
    10201 tcatcacgta gaaaccgccg tcccagccaa atttatctgc tgcccagcca actactgcag
    10261 aggctgccac tgtaccacct aagtaaccga ataaaccggt gaaacctgct gctgtacctg
    10321 ctgctttttt cggtgcaagt tcaagggcgt gtaagccaat caacattacc gggccgtaga
    10381 ttaagaaacc gatagtggtc atccaaatga agtccattaa ttgatatggg ttttcatacc
    10441 aagcatggcc tgcatattgt gcaatttcag attccggtgt cgcagggttg agccagaacg
    10501 caaccactgc tgcggtggta agaatcataa agatgaaacc ggttaaacca cgtttgcctt
    10561 tgaacagttt gtcagagacc caaccacaga gtaatgtacc tggaatcgca gctaattcat
    10621 aaatggtata tgcccatgct gtacctttaa tgttgaagtg ttttacttcg cctaagtaca
    10681 ccggcgacca tttcaatacg ccatagcgga ttaagtaaac gaagacattc gcaatggcaa
    10741 tgtaccataa cagtttgttt ttcagcacat aagtcacgaa aatctctttg gtgcttaaat
    10801 cgtgttcata ggttttttcg ttatagtcgt cagggtagtc gttacgccat ttttcaactg
    10861 gcggtaaacc gcaagattgt ggagtatctt tcatcacaag gtagattgga atagctgcga
    10921 tcattgctgc aattcccggg aaataaaggg cttgttgcca tacatctttt gccgttgctt
    10981 ctacaccata ctcactgaaa tagagcgcac ttgctaatag caccatcgcc cccggcacca
    11041 taccgcctaa gttgtgagcg gtattccaga tagaaacgat agtaccacgc tcagatttag
    11101 accaccagtg aaccattgtt cgtccacacg gtggccaacc cataccttga aaccagccgt
    11161 ttaagaagat cattacccac attactaaaa tgcttgatgt tgcccaaggc attaagccca
    11221 taagggtcat acatagacct gaaagtaaca atccggtcgg taaaaatact ttcgggttag
    11281 agcggtcgga cattcctgcc atcacgaatt ttgataaacc gtaggccagg ccggcagctg
    11341 taccaatcac accgagatcg gtttttgtat acataccagc ttcaatcaag cctttttgtg
    11401 ctaagtcgaa gtttgcacgc acaaaatagt aagcggcata gccgaagaaa attcctgcaa
    11461 acacttgcca acgcaagaat ttatatcttg catcgacttt gtccgccggt aattccgcaa
    11521 tgtgcggagc gggtttaaat ggaccaaaca tagtattctc caatattact tagtaaaacc
    11581 tctgagtaat tcctttttag gaaattaggg aagcaataat aaatgaaaat aaaaaatgac
    11641 aaagttattt tttataaaaa tgtgattcat ttcacaaaaa atttacctta aaccacaaaa
    11701 aatgattgaa aaagaaaatc aaacatcagt atctctagcg ataaaactct cttcttatgt
    11761 acagagaaag aaccataaaa agtacaatat agaaatattt tgtgacatag atctaatttt
    11821 taaacaaatg tctttgaagt cattttattt tcgtttatgc taattaagta atgattaaat
    11881 gttttaattc gagcaaaagg agcaaaaaat gcaaagacat gaacagctag ctcaagtaca
    11941 acaaacgcaa aaatgggatt ttattattat cggtggtggc gcaagtggtt tggggattgc
    12001 ggtagatgca gcttcccgtg gctataaaac cttattatta gaaagccatg actttgcgaa
    12061 aggtacatcg agccgaagca caaaattagt ccacggtggc gttcgctatc ttgcaaatgg
    12121 cgatgttgca ctcgtgagag aagcattgcg tgaacgaggt cgtttagcta aaaatgcagc
    12181 tcatttattt aaaaaccaaa gctttattat tccaaactac aaattcaaag actgtgtaat
    12241 gtatcgtgtt ggtttaggct tatacgatat gctttcaggc aacctgagtt taggaaagac
    12301 tgaaaacatc agtaaaactg aagcgaaaag acgtttacca accttaaatg atactggttt
    12361 acgtacaggc actgtttatc aagatgggca atttgatgac tcacgtcttg cagtgaatat
    12421 ggcacaaacg gtagtagagc acggcggtac agtactaaat cacgccaaag tgacttcact
    12481 gcacaaaacg ccacaaggca aaattgatgg ggtgactttc tacgatgaac tcaatcaaca
    12541 agaacatact gttttcggca ctgcggtgat taacgcaacc ggcgtattta tgaatgatat
    12601 tttaagtatg gatcacggta gcacgaaaaa atttgtcgta ccaagccaag ggattcactt
    12661 agtattagat aaatcattct taccaagtaa tgatgcgtta atgattccaa aaacctctga
    12721 cggacgagtg ttatttgctg taccttggca cgaagtgtta gtcgtaggga caacagatac
    12781 tctgattgaa aatccttctt atgagccaat tccattggaa caagaggtga actttatttt
    12841 agagacagcc gcacaatatc tgacaaaaaa accaactcgt gatgatgtaa aagcagtctt
    12901 tgccggtcaa cgtccgcttg cggcaccgga aaaagaaggt caaagcacta aagaagtatc
    12961 tcgtagtcac aaagttctca ctgatgcaac cagcggtttg attacgatta caggtggtaa
    13021 atggacaact tatcgtcaaa tggcagaaga taccgtagaa gaagcgttaa aagtccactc
    13081 tgaactaggc aataaacctt gtgtgaccgt caacttaccg attcacggta atattccggc
    13141 agcacaagtg aatctacaag atcatctata tgtatatggc tcagatattc cacagttacg
    13201 cgccttaatg actgagaccc cggaatatgc acaaaaaatc catccgagac tagattatac
    13261 cgttgcagaa gtgatctggg cagttcgcca cgaaatggca caaacggttg aggatgtatt
    13321 agctcgccgt gttcgtttgc tcttcactga tgcgagagcg gcgattgata gtgcagcaaa
    13381 agtggctgct attatggcga aagaattagg taaagatgaa atgtggcaac aacagcaagt
    13441 tatccagttc cttgatgttg cgaagcacta tttattggta gattatcagc cacagccaat
    13501 ctaatacgct aaaagcaagc ggttaaaatc gataaaaata ttgcaattac gttatttgca
    13561 actttttaaa ccattttaac cgcttgtata ttagctatca tctcttttat gtttctgttg
    13621 taataaaaag aatgctgtta accccaatac agaaaagcta attcctttca tactcaataa
    13681 tctttttacc aaaaaatcta atgcaatggt tttaactgcc ggtgaattga ccagtgcaag
    13741 ccctgtttgt ttcacttgtt taaaaggctg cataatctca tttttggttt tattggtttc
    13801 cgctttaaat cgcattctaa gtgcattacc ttttagaact agaagttcct tttcggttaa
    13861 tttaagctct tccattttaa tgttctccat tctgtttcaa agttaaagca ctcttaaatg
    13921 cggcaatatc taattttagc tcggttaatg tactttgcat aaaatggcgt tgttttttca
    13981 aggcagaaag tatcatcatt ccgcaaatag tcacagcaat aaacataata atggcaatag
    14041 aaaagaatac tttaactttc tgttcgggta acaaataatt atctaaacca aataataaac
    14101 tcacaaaaga aactaataaa aatacaaaag ccaataagat aaatataagt actgaaatta
    14161 at
//
LOCUS       DANLRW010000068        14051 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.068, whole genome shotgun sequence.
ACCESSION   DANLRW010000068 DANLRW010000000
VERSION     DANLRW010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 14051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14051
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.068"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(167..883)
                     /gene="rph"
                     /locus_tag="PXA71_001673"
     CDS             complement(167..883)
                     /gene="rph"
                     /locus_tag="PXA71_001673"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001261764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HDL5105771.1"
                     /translation="MRPNNRANNQVREIKITRNYTRYAEGSVLIEFGETKVLCNATVE
                     ESVPRFLKGQQQGWVTAEYGMLPRATHSRTQREAAKGKQGGRTMEIQRLIARSLRAVV
                     DLKALGERTVTVDCDVIQADGGTRTASITGACVALYDAMNKLVANGTLKTNPMKGLVA
                     AISVGIVAGEAVCDLEYLEDSNAETDMNVVMVEDGRLVEVQGTAEGEPFSHQELLTLL
                     DLAKQGISQLVEAQRKALAE"
     gene            1164..2027
                     /locus_tag="PXA71_001674"
     CDS             1164..2027
                     /locus_tag="PXA71_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HDL5105772.1"
                     /translation="MIYSMTAFAHLEMKKEWGNAVWEIRSVNQRFLETYFRLPEQFRN
                     LEMTLRERLRSALTRGKVECSLRIDLSKTQNSEIALNKEYAAQVVQSLKWLKETANEG
                     EINLVDVLRFPGVVDNESQDLDQIAQDLLAGFEQILADFIAMRAREGENVQALILQRL
                     EAISVEAAKVQAQMPEILQWQKDRLQQRFDELNLQLDPQRLEQEMVLLAQRVDVAEEL
                     DRLQLHVKETTNILKKGGAVGRKLDFMMQELNRESNTLASKSINADVTNSAVELKVLI
                     EQMREQIQNLE"
     gene            2036..2926
                     /locus_tag="PXA71_001675"
     CDS             2036..2926
                     /locus_tag="PXA71_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="folate-binding protein YgfZ"
                     /protein_id="HDL5105773.1"
                     /translation="MAMNFKQVSQSYPNLCVPLSQYCLIEIAGVDAEKYLQGQLTCDV
                     AKISVGEHTLTSHCDPKGKMSALLRLYRAENEKFMAIIHRSLLPEALTQLKKYAVFSK
                     VTFTELDTPLYGMAGEAAFAKLSENMTALRLTTGQPRAIVWGEELETTADEQLWTLMD
                     IQDGIPVLLQQNQFELIPQATNLQALESAISFTKGCYIGQETVARAKYRGANKRALFT
                     LAGNFESEISLPEVASAIEMQLGENWRATGTVLTSATDENTLWVQVVLNKDVEPNTKF
                     RANGVALEMVELPYSLAENE"
     gene            complement(2958..3218)
                     /locus_tag="PXA71_001676"
     CDS             complement(2958..3218)
                     /locus_tag="PXA71_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001196283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HDL5105774.1"
                     /translation="MALLITHKCTNCDMCLPECPNEAISVGDDIYIIDPVLCTECVGH
                     YEKPTCQKVCPITNCIIKDPDNIETEEQLWERFVMIHHPDQI"
     gene            3448..3867
                     /gene="rbsD"
                     /locus_tag="PXA71_001677"
     CDS             3448..3867
                     /gene="rbsD"
                     /locus_tag="PXA71_001677"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDL5105775.1"
                     /translation="MKKTLNLNAQLSHSIATLGHTDSLTVCDAGLPIPNTIERIDLAL
                     TAGVPSFLQTFDVVVSELFVERVLLAEEIKHKNPQVLAALLERLTQLEQTQQNKIQID
                     YVNHEIFKEQTHYSKAVVRSGECSPYANIILYSGVPF"
     gene            3877..5373
                     /gene="rbsA"
                     /locus_tag="PXA71_001678"
     CDS             3877..5373
                     /gene="rbsA"
                     /locus_tag="PXA71_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
                     /protein_id="HDL5105776.1"
                     /translation="METLLKMSGIDKEFPGVKALSNACLSVYGGRVMALMGENGAGKS
                     TLMKVLTGIYSKDAGSISYLGKEVTFKGPKDSQEAGISIIHQELNLVGNLTIAENIFL
                     GRESKTAWGAIDWKKMYAEADKLLARLGVKHSSHQLCAELSIGEQQMVEIAKALSFES
                     QVIIMDEPTDALTDTETASLFKVIRELKAENRGIVYISHRLKEIFEICDDVTVLRDGQ
                     FIGERVIADIDEDQLIEMMVGRRLEEQYPHLHQERGELLLEVKNLSGSGVNNVSFQLH
                     KGEIVGISGLMGAGRTELMKVLYGALPKTAGSIELNGKAISNHCPQDGLNNGIVYISE
                     DRKGDGLILGMSVKENMSLTSLDHFSKAGSIRHDAEKLAVDDFIEMFNIKTPSREQQI
                     GLLSGGNQQKVAIAKGLMTRPNVLILDEPTRGVDVGAKKEIYQLINEFKKDGLSILMV
                     SSDMPEVLGMSDRILVMHEGQISAEFSRAEATQEKLLAAAIGKSTGLN"
     gene            5383..6351
                     /gene="rbsC"
                     /locus_tag="PXA71_001679"
     CDS             5383..6351
                     /gene="rbsC"
                     /locus_tag="PXA71_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005753457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
                     /protein_id="HDL5105777.1"
                     /translation="MATQTKQFQLGRFLIEQRSFVALFILIVSVSMINPDFFSVDNIL
                     NILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALTGAVAATLVGSELPILLVIPLVL
                     LLGTAFGGISGAIVAKGKVQAFIATLVTMTLLRGITMVYTDGRPISTGFSDQADAFAF
                     IGTGYLFGIPVPIWIMAVVFGLAWYILKHTPIGRYIYALGGNESATQLSGINVNKIKI
                     FVFAVSGFLSALAGLIVTSRLSSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTL
                     VGALIIGFLNNALNLLDISSYYQMIAKALVILAAVLADNYLGTKKV"
     gene            6374..7252
                     /gene="rbsB"
                     /locus_tag="PXA71_001680"
     CDS             6374..7252
                     /gene="rbsB"
                     /locus_tag="PXA71_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006995182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
                     /protein_id="HDL5105778.1"
                     /translation="MKKLTTIASAVMLSLSVAATASAKETIALAVSTLDNPFFVSLKD
                     GAQKKADELGYKLVVLDSQNDPAKELSNVEDLTVRGAKVLLINPTDSEAVGNAVAIAN
                     RNKIPVITLDRGAAKGEVVSHIASDNVAGGKMAGDFIAQKLGSGAKVIQLEGIAGTSA
                     ARERGEGFKQAIEAHKFNVLASQPADFDRTKGLNVTENLLSSKGDVQAIFAQNDEMAL
                     GALRAVSSAKKEVVIVGFDGTDDGVKAVESGKLAATIAQQPELIGSLGVETADKVLKG
                     EKVEAKIPVDLKVISK"
     gene            7373..8302
                     /gene="rbsK"
                     /locus_tag="PXA71_001681"
     CDS             7373..8302
                     /gene="rbsK"
                     /locus_tag="PXA71_001681"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HDL5105779.1"
                     /translation="MKKLTVLGSINADHVISVPYFAKPGETLTGHSCHIAYGGKGANQ
                     AVAAARLGAKVSFIGCIGSDDIGKAMKSAFEQDGIDTRSIKTIPNEMTGIAMIQVAES
                     GENSIVISAGANGHLDETVVAKCAAEITQADYLLMQLETPLPAIVQAAKLAQQNGTKV
                     ILNPAPARALPDELLNLLDMITPNETEAEILTGVKVVDEASAIQAAQVFHQKGIEKVL
                     ITLGSKGVFVSENGVGKIVAGFRVQAVDTTAAGDTFNGALVTAMLEDKPLDQAIRFAH
                     AAAAISVTRKGAQPSIPTRQETLDFLSQQAVSF"
     gene            8316..9326
                     /locus_tag="PXA71_001682"
     CDS             8316..9326
                     /locus_tag="PXA71_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HDL5105780.1"
                     /translation="MATMKDIARLAQVSTSTVSHVINNSRFVSEEIRERVQRVVKELN
                     YTPSALARSLKVNETKTIGMLVTATGNPFFAEVMAGVEQYCQQHQYNLIIATTNGDTE
                     RLQHHLQMLMQRKVDGLLLMCGDTRLNADESLNIPLPLVVLDWWFTELNADKIFENSI
                     SGGYLATKTLIEAGHSKIAIITGNLKKSLAKNRLEGYKKALAEANIPLNPNWVFESHF
                     DFAGGVNGMNALLAQSEKPTAVFACSDTIALGAYQAIWQQGLRIPQDISIIGYDDIEL
                     AKYLSPPLSTISQPKAELGRLAVETLLKRIRFKSTDFQTIMLEPELVLRHSIQTINKN
                     AE"
     gene            complement(9362..9991)
                     /locus_tag="PXA71_001683"
     CDS             complement(9362..9991)
                     /locus_tag="PXA71_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5105781.1"
                     /translation="MTAPTQILLIDDHPLMRQGMRQLLELDHQFSVVGEASNGTDGIK
                     LALRLEPDVIILDLNMKGLSGLDTLRSLRAQGIDARIIVLTVSDEQSDVFALMDAGVD
                     GYLLKDTDTPELLDNIRKAAAGEVVLSETVRQHLLNRQPENDPLSCLTDRELDVLQWL
                     ATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLEQQKG"
     gene            10189..12348
                     /gene="rlmKL"
                     /locus_tag="PXA71_001684"
     CDS             10189..12348
                     /gene="rlmKL"
                     /locus_tag="PXA71_001684"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HDL5105782.1"
                     /translation="MTNQTTYFATAARGFEEILKTELEQICAAECKVAQGGVHFTTTQ
                     KGAYQALLHSRLASRILLPLISTKIFSDSDLYASIVSFNWADLFDPRDTFYIDFSGTN
                     REIRNTQFGAMRVKDGIVDYFERKGFARPTVDKDNPDVRIHVYLDRENVVVSLDLSGD
                     ALHIRGYREETGKAPLRETLAAAIILRSGWKVGTPLVDPMCGSGTLLIEAAQMAANIA
                     PQLHRKHWGFNAWKGHQQAMWKAVLDEAFRNVELGAVGENCNSSLQKMFFGFDLDHRV
                     LTKAKQNAKNAGVDHLIQWQQGDVAALKNPIPEKIGTVVCNPPYGERLGTTPALIALY
                     SVFGQRLKQQFAGWNASIFSGEPELLNCLRLRSARQFKAKNGPLDCVQKNYSISEHNK
                     RSDLDENLQFEQNAQVAPDFANRLTKNIKKIEKWAKQQGIDAYRLYDADLPEYNLAVD
                     RYGDHIVVQEYQAPKNIDEQKARQRLLDAVSATLYVTGVETNKLVLKVRQKQKGTNQY
                     EKLANKGEYFYVNEYGAKLWVNLTDYLDTGLFLDHRLTRKMVGEMAKGKTFLNLFAYT
                     GSATVHAALNGAKSTTTVDMSNTYLNWAEQNLELNNLSLRHHRLFQADCLQWLAECRE
                     RFELIFVDPPTFSNSKRMENSWDVQRDHIELMKQLKRILTADGTIVFSNNKRGFKMDF
                     DGLAALGLTAENISHKTLPLDFERNPQIHNCWIVKNV"
     gene            12525..13004
                     /gene="trmL"
                     /locus_tag="PXA71_001685"
     CDS             12525..13004
                     /gene="trmL"
                     /locus_tag="PXA71_001685"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HDL5105783.1"
                     /translation="MLDIVLYEPEIPQNSGNIIRLCANCGFRLHMIEPFGFGWDDKKL
                     RRSGLDYHEFVDIQKYKNFEDFLERAKPKRLFALTTRGEQNHSDVKYELGDFLMFGPE
                     SRGIPKPLLAEMPMSQKIRIPMCKDSRSMNLSNSVAVVVYEAWRQFGYQNAVAAQSI"
     gene            complement(13098..13916)
                     /locus_tag="PXA71_001686"
     CDS             complement(13098..13916)
                     /locus_tag="PXA71_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
                     /protein_id="HDL5105784.1"
                     /translation="MQEIKLFEQKSVRSHYDEEKDKWYFSIIDVIAILTESLDPSAYW
                     RKLKQRLKAEGNETVTNCHGLKMPSADGKMRLTDVADTEQLFRLIQSIPSPKAEPFKQ
                     WLAKVGYERLQEINDPSQSLDRARENWQKMGRSEKWIQQRMMGQETRNKLTDYWKSSG
                     VEQPQDFAFLTNVIHQEWSGLSVQKHKSLKGLKSQNLRDHMSEAELLFTALAELSSRQ
                     IAESMQAVGVDENAQAGKQGGNIAKNARQELENKTGKSVVTGENFLPPAKNEEE"
BASE COUNT         4076 a         2734 c         3244 g         3997 t
ORIGIN      
        1 gatattttgt aagaagtgca atatttccat aaaaaaataa ttgttatttt atgattgagt
       61 gtattttgaa aagggaaata aaaaaatcta catctgaatc agaacggtta ttctgttttg
      121 tcagatgtag attttattta aaaagaaaat caaaaagaga agtgaattat tcagctaacg
      181 ctttacgttg agcttcaact agctggctaa tgccttgctt cgctaaatct agcaatgtca
      241 gtaattcttg gtgcgagaac ggttcgcctt ctgccgtgcc ttgtacttcc actaaacgac
      301 catcttcgac catcaccacg ttcatatcag tttcagcgtt ggaatcttcc agatattcta
      361 aatcgcacac cgcttcgcct gctacaatac cgacagaaat tgctgcgact aaacctttca
      421 ttgggttagt ttttagtgtt ccattagcta ctaacttatt cattgcatcg tacaatgcta
      481 cgcacgcacc ggtaattgag gcggtgcgag tgcctccatc ggcttgaata acatcacaat
      541 ctacggtaac ggtacgttcg cctaaggctt ttaaatctac caccgcacgc agagaacggg
      601 caatcaagcg ttggatttcc attgtgcgtc cgccttgttt gccttttgcc gcttcacgct
      661 gagtgcgaga gtgggtggct cgtggcaaca taccatattc tgcggtaacc caaccttgtt
      721 gctgaccttt taaaaagcgt ggcacgcttt cttctaccgt agcgttacac aatactttgg
      781 tttcgccaaa ctcaattaat accgagcctt cggcatagcg agtgtagtta cgggtaattt
      841 taatttctct aacttggttg tttgctcgat tatttggacg cattttcttt tccttttgct
      901 aaaattttta ccattttagc aaagaacaca gtaaaatgtg atttttcttt agcaaagaat
      961 ttacatagcc ctcgcccctt gtgggagagg gacggatttt tcttcgttca gaagaaaaat
     1021 cagggagagg ggtaagcggt tatttttatc tcaaatttta caaattcctc cctctctctg
     1081 aaaaatattt ctgaacgaaa tatttttcgg tctctctccc tcaaggggag agagctttac
     1141 ttataaaaac acaaggaata ccaatgattt atagtatgac agcatttgcc catttagaaa
     1201 tgaaaaaaga gtggggcaat gcggtgtggg aaattcgctc ggtaaatcaa cgctttttag
     1261 aaacctattt tcgtttgccg gagcagtttc gcaacctaga aatgaccttg cgtgagcgtt
     1321 tacgttctgc actgacacga ggcaaagtag agtgtagctt acgcattgat ttaagcaaaa
     1381 cccaaaacag tgaaattgcg ttaaacaaag aatatgccgc acaggtggtt caatcattaa
     1441 aatggttaaa agaaaccgca aatgaaggcg aaatcaacct tgttgatgtg ctacgtttcc
     1501 cgggcgtggt ggataatgaa agccaagatt tagaccaaat tgctcaagat ttattagccg
     1561 gctttgaaca aattctggca gattttatcg caatgcgagc cagagagggc gagaacgtgc
     1621 aagccctgat cttacaacgt ttagaagcaa tttcagttga ggctgcaaag gtacaagccc
     1681 aaatgccgga aattctgcaa tggcagaaag atcgtttaca acaacggttc gatgaactga
     1741 atttacagct tgatccacaa cgcttagaac aagaaatggt gttacttgcc caacgtgttg
     1801 atgtggcgga ggaattagac cgcttgcaat tacacgttaa agaaaccacc aatatcctga
     1861 aaaaaggcgg tgcggttggg cgtaaactgg attttatgat gcaagaacta aaccgtgaat
     1921 ccaacacgct cgcctcaaaa tcgattaatg cggacgtgac caattcggcg gtggagctga
     1981 aagtgttgat cgaacagatg cgtgaacaaa ttcagaattt agaataggac agattatggc
     2041 aatgaatttc aagcaagtga gccagagcta tccaaatctc tgcgtgccgc tttctcagta
     2101 ttgtttaatt gaaatcgcag gggtagatgc tgagaaatat cttcaagggc aattaacctg
     2161 cgatgtggca aaaatttcgg tgggcgaaca tacgctaacc agccattgtg atccgaaagg
     2221 caaaatgagt gcgttactgc gtttgtatcg tgcagaaaat gagaaattta tggcgatcat
     2281 tcaccgcagc ttattgcctg aagccctgac gcaacttaaa aaatatgcgg ttttttcaaa
     2341 agtgaccttc acggaattag acaccccact ttatggtatg gcaggtgaag cagcatttgc
     2401 aaaattaagc gaaaatatga ccgctttgcg tttaaccaca ggacagcctc gggccattgt
     2461 ttggggcgaa gagcttgaaa cgactgccga tgaacagctc tggacattaa tggatattca
     2521 agacggcatt cctgttctct tgcaacaaaa ccagtttgag ctgattccac aggcaaccaa
     2581 tttacaggca cttgaatctg cgatttcatt caccaaaggt tgctacatcg ggcaagaaac
     2641 ggtagcgaga gcgaaatatc gtggggcgaa taaacgtgct ttatttaccc ttgccggcaa
     2701 ctttgaaagc gaaatcagct taccggaagt tgcttctgcg attgaaatgc aactgggcga
     2761 aaattggcga gcaaccggca ctgtgttgac cagtgcgact gatgaaaata ccctgtgggt
     2821 gcaagtggtg ctgaataaag atgttgaacc taacaccaag tttagagcca atggtgtagc
     2881 gttggaaatg gtcgagttac cttatagttt ggcagaaaat gagtaaaacg aacggtcatc
     2941 agggtatgac cgttttttta tatctgatca gggtgatgaa tcatcacaaa acgttcccac
     3001 aactgctctt cggtttcgat attatcagga tctttgataa tgcagttggt aatcgggcaa
     3061 actttctggc aagtcggctt ttcataatgc ccgacacatt cggtacataa caccggatcg
     3121 atgatataaa tatcatcgcc caccgaaatc gcctcgttcg ggcattccgg caagcacata
     3181 tcacagttgg tacatttgtg ggtaattaat aaagccatag tttatattga gaaaataaaa
     3241 attaaacaag cggtcgattt tgcaaaaaaa tttgcaaatc ttaccgcttg tcactaaatg
     3301 ctacctatta taaagcaaaa taatttgaac tacttcacat ttttgcaatt tggttgttta
     3361 tccgattaag aaaatttttt atgatgccat cgaaacgttt cgatggagta ttttccaacg
     3421 tgatggagcg aaaataaagg ggttagtatg aaaaaaacgc taaatctaaa tgcacaactt
     3481 tcgcacagta ttgcgacact cgggcatacc gatagtttaa cggtttgcga tgccggtttg
     3541 ccgattccaa acacaataga gcggatcgat ttggctttaa ccgccggtgt gccaagtttt
     3601 ttacaaacat ttgatgtagt agttagtgaa ttatttgttg aacgagtgct acttgctgaa
     3661 gaaattaaac ataaaaatcc gcaagtgtta gcagctcttt tggagcgttt aacccaatta
     3721 gaacaaactc aacagaataa aattcaaatt gattatgtga accacgaaat ctttaaagag
     3781 cagacacatt acagtaaagc tgttgtgcgt tcgggtgagt gttcaccgta tgccaatatt
     3841 attttatatt cgggcgtgcc gttttagggt ggaatgatgg aaaccttatt aaaaatgagc
     3901 gggatagata aagaatttcc cggcgtgaaa gccttgagca atgcgtgctt atctgtttac
     3961 ggtgggcgag taatggcatt aatgggcgaa aatggggcag gtaaatccac cttgatgaaa
     4021 gtattgacgg ggatttatag caaagatgcc ggctctatta gctatttagg caaagaagtt
     4081 acctttaaag gcccgaaaga ttcacaagaa gccggtatta gcattattca ccaagagctg
     4141 aatttagtcg gtaatttaac cattgctgaa aatatttttt tgggccgtga gtccaaaacc
     4201 gcttggggag ctattgattg gaaaaaaatg tatgccgagg cggataaact gcttgcccga
     4261 cttggggtaa aacacagtag ccatcagctt tgtgcggagt tatccattgg cgagcagcaa
     4321 atggtggaaa ttgcgaaagc cctgagtttt gagtctcaag taattattat ggacgaaccg
     4381 accgatgctt taaccgatac agaaacagca tcgttgttta aagttattcg agagttaaaa
     4441 gcggaaaatc gaggcattgt ttatatttcc catcgtttaa aagagatttt tgaaatttgt
     4501 gatgatgtga cggtgctaag agacgggcaa tttatcggcg agcgagtaat tgccgatatt
     4561 gatgaagatc agttaattga aatgatggtt ggtcgccgtt tggaagagca atatccgcat
     4621 ttacaccaag agcgtggcga gttattactt gaagtgaaga atttaagtgg aagtggggtg
     4681 aataatgtgt cattccaatt acacaaaggt gaaattgtgg gtatttccgg cttaatgggg
     4741 gcagggcgta cagaattaat gaaggtgctt tatggtgcat tgccgaaaac agccggctcg
     4801 atagagttaa atggaaaagc gatttccaac cattgtccgc aagatgggtt gaataacggc
     4861 attgtgtata tttcagaaga tcgtaaaggc gatggtctga ttttgggaat gtcggtaaaa
     4921 gaaaatatgt ctttgacctc tctcgatcat ttctccaaag ccggcagtat tcgccacgat
     4981 gcagaaaaat tggcggtcga tgattttatt gagatgttta acattaaaac cccaagtcgg
     5041 gagcaacaaa tcgggctgct ttccggtggt aatcagcaaa aagtggcgat cgctaaaggg
     5101 ttgatgaccc gcccgaatgt gctgatttta gacgagccga cacggggtgt tgatgtgggg
     5161 gcgaaaaaag agatctatca attaattaat gaatttaaaa aagatgggct tagtattttg
     5221 atggtttcgt ccgatatgcc ggaagtgttg ggaatgagcg accgcatttt agtgatgcac
     5281 gaagggcaaa tcagtgcaga attttcacga gcagaagcga cacaagaaaa gctactggca
     5341 gcagctattg gcaaaagtac aggattaaat taaggtgtgt ttatggcaac tcaaacaaag
     5401 cagtttcaac ttggcagatt tttaatcgag caacgttctt ttgtagcgtt atttatttta
     5461 attgtcagtg tttcaatgat taaccctgat tttttcagcg tggataatat tttaaatatt
     5521 ctacgccaaa cctcggtgaa tgcgattatt gcggtcggaa tgacctttgt gattttaatt
     5581 gcaggcattg atttatcggt cggttcggtt ttagccttaa ccggtgcggt tgcagcgacc
     5641 ttagtcggtt ctgaattgcc gattttgttg gtgattccgc tggttttatt attagggacg
     5701 gcatttggtg gtattagtgg ggcgattgtt gctaaaggta aagtgcaggc atttattgcg
     5761 actttggtca caatgacctt attgcgtggg attacgatgg tttataccga tggcagaccg
     5821 attagcaccg gcttttctga ccaagcagac gcctttgcgt ttattgggac aggctattta
     5881 tttggtattc ctgtgccgat ttggattatg gcggtagtgt ttgggttagc ttggtatatt
     5941 ttgaaacaca ccccgattgg gcgttacatt tacgctttag gtggcaacga atcggcaacc
     6001 cagctttcag gcatcaatgt gaataaaatt aagatcttcg tatttgccgt gagtggtttt
     6061 ttatctgctc ttgccggctt aattgtgact tcacgtctct cttctgctca gccaacggca
     6121 ggtgtgtcct atgagttaga cgcaattgca gcggtagttg ttggtggaac cagtctaatg
     6181 ggcggtaaag ggcgtgtaat gggaacgctt gtcggggcat taattatcgg tttcttaaac
     6241 aatgccctta atttattgga tatttcttca tattatcaga tgattgctaa agcgttggtt
     6301 attttagcag ctgtattagc tgataattat ctaggcacta aaaaagttta atctatcttt
     6361 aaaggagatt tctatgaaaa aattaactac gattgcatca gcggttatgt taagtttatc
     6421 ggttgcagcc actgcttcgg caaaagagac tatcgctctt gcagtatcga ctttagataa
     6481 cccattcttt gtgagcctta aagacggtgc acagaaaaaa gcagatgaat taggctacaa
     6541 attagtggtg cttgattccc aaaatgaccc ggctaaagag ctttccaatg tggaagactt
     6601 aacggtgcgt ggggcaaaag tgttattgat taacccaacc gattcggaag cggtcggaaa
     6661 tgcggtggct attgcaaatc gcaacaaaat tccggttatt acacttgacc gtggtgcagc
     6721 aaaaggcgaa gtggttagcc atatcgcttc cgataacgtt gccggcggca aaatggcggg
     6781 agatttcatt gctcagaaat taggctcagg ggcgaaagtg attcaattag aaggcattgc
     6841 cggcacttcc gccgctcgtg aacgtggtga aggctttaaa caagcgattg aagcacataa
     6901 attcaatgta ttagccagtc aaccggctga ttttgaccgc actaaaggct taaatgtgac
     6961 tgaaaacttg ctctcaagca aaggggacgt acaagctatt tttgctcaaa atgatgaaat
     7021 ggcactagga gctttgcgtg cagtgagttc agcgaagaaa gaggttgtaa ttgtgggctt
     7081 tgacggcaca gatgatggcg taaaagccgt tgaaagcggt aaacttgccg caacgattgc
     7141 tcaacaacct gaactgattg gctcattagg cgtagaaact gccgataaag tgctaaaagg
     7201 cgaaaaagtg gaagcaaaaa ttccggttga tttaaaggtt atttcaaaat aattatactt
     7261 gaagatagcg ttcgtctctg acgaacgctt tgaattaata aaatagcact cgtcagagac
     7321 tagtgctatc agaatcctag ttttgttgta ctaggtaatt tgagggctta atatgaaaaa
     7381 actcaccgtt ctcggtagca ttaacgctga tcacgtgatt tccgttccct attttgccaa
     7441 accgggggaa acgctcaccg gacatagctg ccacattgct tatggcggta aaggggcaaa
     7501 tcaggcggtg gcggcagcac gtttgggagc taaggtttct ttcatcggtt gtattggcag
     7561 tgatgacatc ggcaaagcaa tgaaatcagc ctttgagcaa gatggcattg acactcgctc
     7621 gattaaaacg attccgaatg aaatgaccgg cattgcaatg attcaagtgg cggaatcggg
     7681 cgagaacagt attgtgattt cagccggagc gaacggtcat ttggatgaaa cggttgtggc
     7741 aaagtgtgca gccgaaatca cacaggcgga ttatttgcta atgcagctag aaacaccgtt
     7801 gccggcgatt gtgcaagcag caaaattggc tcagcaaaac ggcacgaaag taatattaaa
     7861 ccctgcgcct gctcgagcgt tacccgatga actgttaaac ttactggata tgattacccc
     7921 aaatgaaacg gaagcggaaa tattaaccgg tgtgaaagtt gttgatgaag ccagtgcgat
     7981 tcaagccgca caagtgtttc accaaaaggg catcgaaaaa gtgttgatta cacttggctc
     8041 aaaaggggta tttgtaagcg aaaacggtgt aggcaaaatc gttgcaggct tccgtgttca
     8101 agcggtggat accactgccg caggggatac ttttaacgga gcattagtga ctgcaatgtt
     8161 agaagataaa ccgctggatc aagccattcg ttttgctcac gcagcggcag cgattagtgt
     8221 gactcgcaaa ggggctcaac cttctattcc gacccgtcag gaaacactgg attttctaag
     8281 ccaacaagcg gtgagttttt aggaaaattt tgcaaatggc aacaatgaag gatattgcac
     8341 ggcttgcaca ggtttccacc tcgaccgttt ctcacgttat caacaatagc cgatttgtca
     8401 gcgaggaaat tcgggaaaga gtgcagaggg tggtgaaaga actgaattac acgccttctg
     8461 cattggctcg tagcctcaaa gtgaatgaaa ctaaaaccat cggaatgctg gtaacggcaa
     8521 ccggcaatcc gttttttgcg gaggtgatgg cgggggtgga gcaatattgc cagcaacatc
     8581 aatataacct gattattgcc actaccaacg gtgacaccga gcgtttgcaa caccatttgc
     8641 aaatgctgat gcaacgaaaa gtagatggct tgttactgat gtgtggcgat accagattga
     8701 atgccgatga gagcttgaat attccgctgc cattggtggt gttagactgg tggtttaccg
     8761 agctcaatgc agataaaatc tttgaaaatt caatatccgg cggctatctc gcaacaaaaa
     8821 ccttaattga agcagggcat tctaagattg cgattattac tggaaaccta aaaaaatcat
     8881 tggcaaaaaa tcgtttagaa ggctacaaaa aagcacttgc cgaggcgaat attccactca
     8941 atccaaactg ggtgttcgaa agccattttg attttgccgg cggggttaat ggaatgaatg
     9001 ctttgcttgc ccaaagcgaa aagccgacag cggtatttgc ctgtagcgac accattgctc
     9061 taggggctta ccaagcaatc tggcaacaag gtttacgaat accgcaagat atttcgatta
     9121 tcggctatga cgatattgaa ctggcaaaat acctttcccc accgctgagt accattagcc
     9181 agcccaaagc ggaactcggg cggcttgcgg tggaaacttt gctaaaacga attcgtttta
     9241 aatccactga ttttcaaacc ataatgcttg aacctgaatt agttttaagg cattcaatcc
     9301 aaacaataaa caaaaacgct gaataatgtg aagttattca gcgtttttta tccgatttca
     9361 attagccttt ttgctgttcc aaataaagca cggtggcggc aactcgggaa tgcacgttta
     9421 atttacgcag taaattgcgg atatgcactt ttacggtttc ttcggaaata aagagctgag
     9481 ccgcaatttg tttgttcgac ataccggttg cgagccattg taaaacatcc agttcacgat
     9541 ctgttaagca acttaaagga tcattttctg gctggcggtt gagtaaatgt tggcgaacgg
     9601 tttcgcttaa taccacttca ccggcagccg ctttacggat attatctagt agttccgggg
     9661 tgtcggtatc ttttaataaa tagccgtcca caccagcatc cattaatgca aatacatcgg
     9721 attgctcgtc tgacactgtt aaaacaatga ttctggcatc tataccttga gcgcgcaatg
     9781 agcgtaaagt atctagccct gaaagccctt tcatatttaa atccagaata atcacatccg
     9841 gctcaagtcg taatgcaagt ttgataccgt cggtgccgtt gcttgcttca cccactacac
     9901 taaattggtg atctaattcc aatagttgac gcattccctg acgcattaat gggtggtcgt
     9961 caatgagtaa aatttgagtt ggagctgtca tttatttctc ctttcctttc tcttaatcgg
    10021 ttaattttgc aattattaat tcaaaatagc aagtttaggg atttactaaa tgccgctttt
    10081 ttgatcttag ctaattttta actaaaaaag aaattgcaaa actttgcaag aaaaagaccg
    10141 cttgttcggc tataattact gccaattttt atttcaagtg tgaaaagaat gacaaatcaa
    10201 acaacctatt ttgccacggc agcccgtggt tttgaggaaa tactaaaaac cgaactggag
    10261 cagatttgtg cggcagaatg caaagtcgct caaggcggtg tgcattttac caccacgcaa
    10321 aaaggggctt atcaggcatt attacacagc cgtttagcct ctcggatctt actgccgctc
    10381 atcagcacca aaatttttag tgatagcgat ttatatgctt ccatcgtgtc atttaactgg
    10441 gcggatttat tcgatccccg tgataccttt tacattgatt tcagcggcac taaccgagaa
    10501 atccgcaaca cccaatttgg ggcaatgcga gtgaaagacg gcattgtgga ttactttgaa
    10561 cgcaaaggtt ttgcccgccc aacagtagat aaagataatc cggatgttcg cattcatgtt
    10621 tatttggatc gtgaaaatgt tgtggtttcg cttgatttaa gtggagatgc cttacatatt
    10681 cggggctatc gggaagaaac cggtaaagct ccgttgcgtg aaacattggc ggcagccatt
    10741 attttgcgtt ccggctggaa agtcggcacg ccattggttg atccgatgtg tggttcaggc
    10801 acgttactga ttgaagcagc acaaatggca gcgaatattg cccctcaact tcaccgtaaa
    10861 cattggggct ttaatgcgtg gaaagggcat caacaagcga tgtggaaagc cgtgttagat
    10921 gaggcattcc gaaatgttga attgggtgcg gtaggggaga attgcaattc gtccctacaa
    10981 aaaatgttct tcggttttga tctcgatcat cgtgtgctga ctaaagcaaa gcaaaatgcg
    11041 aaaaatgcag gggtagatca tctcattcaa tggcaacaag gtgatgtggc tgcgttaaaa
    11101 aatccgattc cggaaaaaat cggcacggtg gtgtgtaacc ccccttatgg tgaacgttta
    11161 ggcacaacgc cggcgttaat tgctctttat tcggtgttcg ggcaacgcct aaaacagcaa
    11221 tttgccggtt ggaatgcctc aatttttagc ggcgagcctg aattgttaaa ttgcctgcgt
    11281 ttacgttcag cccgtcaatt caaagcgaaa aacggtccgt tggattgtgt gcagaaaaat
    11341 tactccatca gcgagcataa caagcggtca gatttagatg aaaatttaca atttgaacag
    11401 aatgctcaag tcgctccgga ttttgcaaat cgcttaacca aaaatatcaa aaagatcgaa
    11461 aaatgggcga aacaacaagg cattgatgcc taccgtttat acgatgccga tctgcctgaa
    11521 tataatttag cggtggacag atatggcgac cacattgttg tgcaggaata ccaagccccg
    11581 aaaaatattg atgagcaaaa agcccgccaa cgcttgttag atgcagtctc tgctacgctt
    11641 tatgtgacag gtgttgaaac taataaatta gtgttgaaag ttcgccaaaa acaaaaaggc
    11701 acgaatcagt acgaaaaact tgccaataaa ggcgagtatt tctatgtgaa cgagtatggg
    11761 gcgaaactgt gggtgaattt aaccgattac ttggatacgg gtttgttcct agaccatcgc
    11821 ttaacccgta aaatggtggg cgaaatggca aaaggcaaaa cattcctgaa tctgtttgcc
    11881 tacacgggtt cagctacggt tcacgctgct cttaatgggg caaaatcgac cactacagtg
    11941 gatatgtcga acacctattt gaactgggcg gagcaaaatt tagagctgaa taatttatca
    12001 cttcgccatc atcgtttgtt ccaagccgat tgcttgcaat ggctggcaga atgccgtgag
    12061 cgatttgagc tgatttttgt cgatccgccg actttctcca actcaaaacg aatggaaaac
    12121 agttgggacg tgcaacgaga ccatattgag ttaatgaaac agcttaaacg tattttaacc
    12181 gctgatggta ccattgtgtt ctcgaacaat aagcgtggct ttaaaatgga ttttgacggt
    12241 ttggcagcat taggcttaac ggcggaaaat atttcgcata aaaccttacc gttggatttt
    12301 gaacgcaatc cgcaaatcca taattgttgg attgtgaaga atgtatagat aataccctcg
    12361 acccttgtgg gagagggata gatttttctt cgttcagaag aaaaatcagg gagagggtaa
    12421 gaagttactg atgaaagagt tatttccccc tctctctgaa aaatatttct gaacgaaata
    12481 tttttcggtc tctctcccac aaggggagag agtaaggcta aaaaatgtta gatattgttt
    12541 tatacgaacc tgaaattccg caaaacagcg gaaatattat ccgcctttgt gccaactgtg
    12601 gctttcgttt gcatatgatt gaaccgttcg gctttggttg ggacgataaa aagctccgcc
    12661 gttcggggct ggattatcac gaatttgtgg atattcaaaa atataaaaat tttgaagatt
    12721 tccttgagcg tgctaagcct aaacgcttgt tcgccttaac caccagaggg gagcagaacc
    12781 acagtgatgt gaaatatgaa cttggcgatt ttttaatgtt cgggccggaa agcagaggca
    12841 ttccaaagcc attattagcg gaaatgccga tgtcgcaaaa aatccgcatt ccgatgtgca
    12901 aagacagccg cagtatgaat ttatctaact cggtggcggt ggttgtgtat gaggcgtggc
    12961 gacaattcgg ctaccaaaat gcggtagcgg cacaatctat ttaacttgca agcggtgtga
    13021 ttttggctat tttttgcaag tttgtggtca aggttggggg aggctcgacc ttgactaatt
    13081 aagaacatct attgtgtcta ttcttcttca tttttagctg gaggtaaaaa attctctccg
    13141 gtaacaactg atttacctgt tttattctcc aattcctgac gggcattttt ggcaatattg
    13201 ccaccttgtt ttcctgcttg ggcattttca tcaaccccaa ctgcctgcat actttctgca
    13261 atttgccgac tggaaagttc agcaagtgct gtaaataaca attcagcttc gctcatatga
    13321 tctcgcagat tttggctttt taaaccttta agcgatttat gcttttgtac agatagtccg
    13381 ctccattctt gatgaatcac attggttaaa aatgcaaaat cttgtggctg ttcaacccct
    13441 gacgatttcc aataatcggt cagtttattt cgggtttctt gtcccatcat tctttgctga
    13501 atccattttt cacttcgtcc catcttctgc caattctccc ttgctcgatc tagactttga
    13561 cttggatcgt ttatttcctg taagcgttca taacctactt ttgctaacca ttgtttgaag
    13621 ggctctgctt tcggactagg gatagattga ataagtcgga aaagttgttc ggtatctgct
    13681 acatcagtca aacgcatttt tccgtcagca gagggcattt tcaacccgtg acaatttgtc
    13741 acggtttcat tgccttctgc ctttagcctc tgttttagct tacgccaata agcagaggga
    13801 tctaggcttt cggttaaaat agcaatcaca tcaataatag aaaaatacca tttatctttt
    13861 tcttcatcgt aatgactgcg tacagatttc tgttcaaaaa gtttaatttc ttgcataata
    13921 aaaatactgt atataaaaac aagaaaagta taacagttgt cagcttttca gcaagtagca
    13981 aaagtgattt tttcgatctc gatcccaaaa atgatttttg ggtattgatt tttcaatcga
    14041 taaattttct g
//
LOCUS       DANLRW010000069        13853 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.069, whole genome shotgun sequence.
ACCESSION   DANLRW010000069 DANLRW010000000
VERSION     DANLRW010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13853
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.069"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..1447)
                     /gene="hrpA"
                     /locus_tag="PXA71_001687"
     CDS             complement(<1..1447)
                     /gene="hrpA"
                     /locus_tag="PXA71_001687"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HDL5105785.1"
                     /translation="METPLQKNHKKPPLVKLENITTADFRRLLGRLKGAENIKNIDHK
                     RSVLAEISQDLTACQARFFARTQHAQNLKIDYPDLPVSARREEILKLISENQVVVIAG
                     ETGSGKTTQLPKMCLELGRGVKGLIGHTQPRRIAARSVATRIAEELKSELGETVGYKV
                     RFNDQVSENSLIKLMTDGILLAEIQHDSYLNQYDTLIIDEAHERSLNNDFILGYLKQI
                     LHKRPDLKVIITSATIDVERFSKHFNNAPIIEVSGRTFPVEVRYRPIVEDQDQLQGIL
                     NAVDELQAEGRGDILIFMNGEREIRDTAEALQKQELRHSEILPLYARLSAAEQQRIFQ
                     PSGGLNRIILATNVAETSLTIPNIKYVIDTGTARISRYSYRTKVQRLPIEPISQASAN
                     QRKGRCGRTSEGICIRLYSEEDFNSRPQFTDPEILRTNLAAVILQMTSLGLSDIANFP
                     FVDAPDSRQIQDGIRLLEELQAIIPNEKIPST"
     gene            complement(1551..2003)
                     /locus_tag="PXA71_001688"
     CDS             complement(1551..2003)
                     /locus_tag="PXA71_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HDL5105786.1"
                     /translation="MTLQFNAVALLLVVLIILGLISQNSAVTISAAVLLIMQQTLLSK
                     FIPFVDQYGLKIGIIILTIGVLSPLVSGRITLPELAQLLNWKMALSIIAGVLVAWLGG
                     RGVNLMGSQPVLVTGLLIGTVIGVAFLKGVPVGPLIAAGILSLIVGKT"
     gene            complement(2066..2335)
                     /locus_tag="PXA71_001689"
     CDS             complement(2066..2335)
                     /locus_tag="PXA71_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105787.1"
                     /translation="MDAAMSLRFDKLRFVKRLQEANQTPEMAEAFANALDEALEQSQS
                     PLATKADLQLELEKLKNEINTTIFKAITLNITILGFLMAIMKFIN"
     gene            complement(2433..3029)
                     /gene="grpE"
                     /locus_tag="PXA71_001690"
     CDS             complement(2433..3029)
                     /gene="grpE"
                     /locus_tag="PXA71_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDL5105788.1"
                     /translation="MTTQNEHLQEEVKQEEIQPEVVTEETQAEEQNTPQEEPLALAQA
                     RIAELEAYIAEADKREQDIQLRAQAEIQNIRRRAEQDVEKAHKFALEKFSKELLTVVD
                     NLERGLDALDKAVTDETTQALVDGVEMTHKEFINTLAKFGVVAIGEVGEAFNPELHEA
                     ISMQPAEGIEANHVSTVLQKGYTLHGRVIRPAMVMVAN"
     gene            3251..4345
                     /locus_tag="PXA71_001691"
     CDS             3251..4345
                     /locus_tag="PXA71_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDL5105789.1"
                     /translation="MKKLAGLFAAGLATVALTACNEEKAAEPKATAAEAKPQATNQTV
                     HLYTWTEYVPEGLLDEFTKETGIKVEVSSLESNETMYAKLKLQGKDGGYDVIAPSNYF
                     VSKMAKEGMLAELDHAQLPVIKELNQDWLNKPYDQGNKYSLPQLLGAPGIAFNTADYK
                     GETFTSWGDLWKPEFAGKVQLLDDAREVFNIALLKLGKNPNTTNPDEIKEAFEELKKL
                     RPNVLSFTSDNPANSFIAGEVSVGQLWNGSVRIAKKENAPVDMVFPKEGPVLWVDTLA
                     IPANAKNKENAHKLINYLLSAKVAEKLTLAIGYPTSNVEALKVLPKEITEDTAIYPSA
                     EVLQKSQWQDDVGDAIELYEKYYQELKAAK"
     gene            4481..5872
                     /locus_tag="PXA71_001692"
     CDS             4481..5872
                     /locus_tag="PXA71_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HDL5105790.1"
                     /translation="MNLRWQEYPENARKLFKLSLPIFISQLSASGMGLADIVMAGLVS
                     DDDVSAIAVSNSIYFPLFLFVSGLLNAITPTVSYLNGSSNRHLIANQVRQGYWIVFAM
                     SIPLMAIFLNSHLILDLMQTPAEFSIKSQQYLAVMAVGLIPALLAVSLRCMNDGLSNP
                     KPAMRITFFGLLLNIPLNYIFIFGKFGLPEMGAVGCGVATAIVNLIMFFMLLHYCYTN
                     SAQKDIRLFEKWIDAPSGQILLKLCKLGLPIAFAIFTEVMLFSTSSLFLSPLGSQVVA
                     SHQAALQTSSLFFMIPMSFGIATTIMIGQTLGQKNVEGAKILSYHALITATALAIIAA
                     IIIILLKNFIPFAFTNNPISIAITAHLLIFAAVYQIPDAIQAVANGILRGYKHTQPIL
                     YVTLFCYWGVSMPLGYILARTDWIVQPMAAQGFWLVFCIGLSLAGGLLLWQMRKIQAV
                     PKAQLIAKLERIK"
     gene            5931..9455
                     /gene="recB"
                     /locus_tag="PXA71_001693"
     CDS             5931..9455
                     /gene="recB"
                     /locus_tag="PXA71_001693"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HDL5105791.1"
                     /translation="MKNLNPIQLPLNKSVLIEASAGTGKTFTIANLYLRLLLGIGCNP
                     LTVEQILVVTFTKAATEELKNRIRKNIQQCADFLKDQADGLEVESTKSYRNNLDFLAQ
                     IYPLIPNIHEALLRLSIAEREIDTASVFTIHGFCQKMLVQFAFESGVRFDLDLQPNQS
                     DLLKKLSEEVWREQFYPQDLAITYAVAEQLGTPEYALNAVRRYLSTELPEPNASLNQD
                     IAEHLAQYQQFINEVKSYWKTHSDELVETIRHDLKHKITLHGGWYRATTFEAGVEVMN
                     QWANSQHNHFPAGLYLFTTEKIAAGTKKSCEPIDSPHLAKNQAFLTAYKERFENSLSA
                     MLQYQFLIALKAKLAEYKQSHPQRSFDDLLTMLNQALKNLHTGEALSQKIRAMYPFAM
                     IDEFQDTDLTQYEIFSQIFMAENAENGFIMIGDPKQSIYKFRGADIFTYLRAAKQADE
                     QFTLGKNWRSLPEVVQAVNNLFSFANDNSPFLYEDIGFHPVEADSQKGQLVSEQGHFV
                     GYITENSKLDDLAEMCAYQIHQQLEAMAQGKFGVEKNGEFQSFAAKDIAILVRKGSQA
                     KRIKKALAKRNIKSVYLAESASVFGSEIATELCWLLQAALNPYHYKALLSALGSTLWG
                     LTAAEIHRYKENEQLWDLKVNQFVEYSNIWKEQGVLPMLHKIYLEQGIIERLKGLENA
                     DRLITDLLHLTEILQETSQALESEAELLRWYEKQVNSPDFNDEQQLRLESEEELIKIV
                     TIHGSKGLQYPIVWLPFVSQKSEGDTQTALSLYRNSQGALDWCLGSEEASFSLQYEAY
                     AEDLRLLYVALTRAESQLNLVLPKEISGWSPLHYLLADGEIPTGKVPVSDYFSQKRIA
                     ANLVEVAGELPFSLWEGEQSSDDYQAKTFSGNIRVVGQITSFTSLYAQHERFSEGKSE
                     RVMDLAQDRDVHIETIEAGYSSETAAFSPFQFPHGIKVGTVLHHFFEHCQFNEQIDRE
                     AVAKVCEQLGLSEEWIEPTALWFERILTTPLAEANFCLKAIDETKRLNEWQFYLRLKN
                     DKALHQLNALLKQHSPLAKTLPELQLPQLEGFVRGFVDCIVQVEEKFYLIDYKSNFLG
                     YLPQNYAKEHIQREMGRQRYDLQYLLYTLALHRYLTARLGEKYDYERDFGGVAYLFLR
                     AMNGENDNGVYFDKPTKQLIEEMDRLFG"
     gene            complement(9497..9979)
                     /gene="greB"
                     /locus_tag="PXA71_001694"
     CDS             complement(9497..9979)
                     /gene="greB"
                     /locus_tag="PXA71_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HDL5105792.1"
                     /translation="MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRS
                     ENAEYIYGKRRLREIDRRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGEAK
                     QYRIVGCDEFDPAKNWISIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWYEQAS
                     "
     gene            complement(10030..11310)
                     /gene="pepB"
                     /locus_tag="PXA71_001695"
     CDS             complement(10030..11310)
                     /gene="pepB"
                     /locus_tag="PXA71_001695"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HDL5105793.1"
                     /translation="MTAMKISLSTQNAPEIWGKNAILSANDAGFTVHNPNNDLATIQK
                     AARKIKNQGISTVELTGDSWDLESCWAFHQGFHSVKNQGSVQYPDLDEQQAEFDNRVK
                     CATFVRELINKPSDKLTPEKLAEQAVEFIQKMAKPNTVSYQIIRGEALQEQGYHGIWT
                     VGKGSANPPAFLVLDFNPTNDENAQVLACLVGKGITFDTGGYSLKPSDSMSTMRTDMG
                     GAALLTGSLAFAIARGLNKRVKLYLCCAENMVSHNAFKLGDIITYRNGVTVEVLNTDA
                     EGRLVLADGLIDACKQNPQFIIDAATLTGAAKVAVGNDYHSVLSMDDNLTEALFKSAK
                     TENEPFWRLPFEEFHRGQIASSFADIANIGSVPVGAGASTATAFLSYFVENYQQNWLH
                     IDASATFRKTASDLWAAGATGLGIRTVANLLLSK"
     gene            complement(11449..12270)
                     /locus_tag="PXA71_001696"
     CDS             complement(11449..12270)
                     /locus_tag="PXA71_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase, lipoprotein e(P4) family"
                     /protein_id="HDL5105794.1"
                     /translation="MKNIKLSAMSLTALFVLTACSHTHKNSDEHHQMVLQEQATLGIN
                     WMQQSGEYQALAHQAFNAAKVAFDQAKVKKGKKKAVVVDLDETMVDNSLYAGWQVKNH
                     KPFDGESWTRWVNARQTGAIAGAVEFNNYVNSHKGTMFYVSNRKDSSEKAGTIDDMNK
                     LGFSGVSEQTLLLKKDKSNKTPRFEEIEKQGYEIVLYIGDNLNDFGDATYRKSNAERR
                     AFVAENSQQFGKKFIMLPNPNYGDWEGGLDKDYYKGNAESRVKIRHNAIKAWDGK"
     gene            12418..13361
                     /locus_tag="PXA71_001697"
                     /pseudo
     CDS             12418..13361
                     /locus_tag="PXA71_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251085.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
     gene            complement(13474..>13853)
                     /locus_tag="PXA71_001698"
     CDS             complement(13474..>13853)
                     /locus_tag="PXA71_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="efflux transporter periplasmic adaptor subunit"
                     /protein_id="HDL5105795.1"
                     /translation="ALTTLTDNNYTEQSGNTEAVYYYANVSVDNADNSLRIGMTTQAQ
                     ITIDKREQVLVVPTSVIKKRGKENYVLVLENEQSVERKIQIGISDTQNTEVLAGLNEG
                     DQVIVTQRADDEKISTARGPRMF"
BASE COUNT         3834 a         2798 c         2996 g         4225 t
ORIGIN      
        1 cggtggaggg gattttttca tttggaataa tcgcctgtaa ttcttccaac aaccgaatcc
       61 cgtcctgaat ttgtcggctg tcaggggcat caacaaacgg gaaattggca atatcactca
      121 atccaagcga agtcatttgt aaaataaccg ctgcaaggtt agttcgtaga atttcaggat
      181 cggtaaattg tggacggctg ttgaaatcct cttctgaata gaggcggata cagatccctt
      241 ccgaggttcg cccacaacgc cctttccgct ggttggcgga ggcttgcgaa atcggctcaa
      301 tcggcaagcg ttgcactttg gtgcggtagc tataacgaga aatacgagcc gtgccggtgt
      361 cgatcacata tttaatattc ggaatagtga gggaggtttc tgccacgttg gtcgccagaa
      421 taattcggtt tagcccaccg cttggctgga aaatccgttg ttgttcggca gccgataagc
      481 gggcgtaaag gggtaaaatt tcgctatgtc gcagttcctg cttttgcaag gcttcggcag
      541 tgtcacgaat ttcccgttca ccgttcataa aaatcagaat atcgccacgc ccttcggctt
      601 gcagttcgtc caccgcattt agaatacctt gcagttgatc ttgatcttcc actatcgggc
      661 gataacgcac ttccaccggg aatgtccgac cagagacttc aataatcggg gcgttgttga
      721 aatgtttgga aaaacgttct acatcaatag ttgccgaggt gatgatcact ttcagatcgg
      781 ggcgtttgtg cagaatttgt ttcagataac ccaaaataaa atcgttgttc agcgaacgct
      841 cgtgagcttc gtcaataatc agcgtatcgt actgatttaa atagctgtcg tgctggattt
      901 ccgccagcag aataccgtcc gtcattagct tgattaagct gttttcactg acttgatcgt
      961 taaagcggac tttgtaaccg accgtctcgc ccagttccga tttcagctct tcggcaatgc
     1021 gagtcgccac cgaacgtgcg gcaattcggc ggggctgggt atgcccaatc aagcccttca
     1081 ccccacgccc gagttctaag cacattttcg gtaactgggt ggttttgccc gaaccggttt
     1141 cccctgcgat caccaccacc tgattttcgc taatcagttt taaaatttcc tcacggcgag
     1201 cggaaacagg cagatcaggg tagtcaattt tcaggttttg ggcgtgctga gttcgtgcga
     1261 aaaaacgtgc ctgacaagcg gtgagatctt gcgaaatttc tgccaaaact gaccgcttgt
     1321 gatcgatgtt tttaatattt tccgcccctt ttaagcgacc gagcaggcgg cggaaatcgg
     1381 cggtggtgat attttccagc ttcacaagcg gtggtttctt atgatttttt tgcaaaggtg
     1441 tttccattta atttctcttt tgcattaaga ccttgtgatt tattgtaggg tgggcgtaag
     1501 cccacgtaac agaataggga ttttatgcgt ggacttacgt ccaccctaca ttaggtttta
     1561 ccaacaatca gtgacaaaat ccctgccgca atcaacggcc cgaccggtac gccttttaag
     1621 aacgccacgc cgatcaccgt gccgattaaa agcccagtta ccaacaccgg ctggctgccc
     1681 attaaattca cgcccctgcc acctagccac gctaccagca cgccagcaat tattgagagt
     1741 gccattttcc agttcaatag ttgggcaagt tcgggaagcg taattcgccc tgaaaccaag
     1801 gggctaagta cgccgatggt taaaatgata atcccgattt ttaagccgta ttgatcgaca
     1861 aaggggataa atttagaaag taaggtttgt tgcataatca gcaatacggc ggctgaaata
     1921 gtaaccgcac tgttttggct gatcagccct aaaataatca gcaccacaag tagaagtgcc
     1981 actgcgttaa attgtaaagt cataggatta aaacgtaaaa acccttactt catagaagta
     2041 agggagtggt taattaaacg ttgagctagt taataaattt cattattgcc attaaaaagc
     2101 caagaattgt gatatttaag gtaattgctt taaatatcgt ggtattgatt tcatttttta
     2161 gcttttcaag ttcaagttgc aaatcagctt ttgttgctag tgggctttga ctttgctcta
     2221 aggcttcatc gagagcatta gcaaatgcct cagccatttc aggtgtttga ttggcttctt
     2281 gcaagcgttt tacaaaacgt aatttgtcaa atcgtaggct catagctgca tccatttcaa
     2341 ttatcctctt gtggttaagt tataaactaa tttagcataa tcacaagcag gaattttagg
     2401 agattttgtg atcttcgtcg aaaatcgaca atttagtttg ccaccatcac cattgccggg
     2461 cgaatcactc gtccgtgaag cgtgtagcct ttttgtagca ctgtgctgac atggttggct
     2521 tcaattcctt cggcaggttg cattgaaata gcttcgtgca attcagggtt aaatgcctcg
     2581 cctacttcgc caattgccac cacaccaaat ttagccagtg tattgatgaa ttctttatga
     2641 gtcatttcaa cgccgtcaac taacgcttga gtggtttcat cggtcacggc tttatcaagg
     2701 gcatctaatc cacgttcaag gttatcaacc actgttaaca attctttgga gaatttttct
     2761 aaagcgaatt tgtgagcttt ttcaacatct tgctctgcac ggcggcggat attttgaatt
     2821 tctgcttgag ccctaagctg aatatcttgc tcacgtttgt cggcttctgc aatataggct
     2881 tctaactcgg caattcgagc ttgagcgaga gctaacggtt cttcttgagg tgtattttgt
     2941 tcttccgctt gagtttcttc agttacaact tcaggttgaa tttcttcttg ttttacttct
     3001 tcttgtaagt gttcattttg agtggtcatt ttttatcctt taaaagacta atctggaaat
     3061 gtaaatcttc cttaatatag cgataaatta agggatttca agcatatctc tttctttttg
     3121 cgaaaataat tcacttttta atcagaaaag gcttgcaaaa tacggggggg ggcttaaaat
     3181 gccctagtct tttccgccct taggcaaggc tatatttttt aatcactttt ctttaacgga
     3241 gaaaacttaa atgaaaaaat tagcgggttt atttgcagca ggtttagcaa cagttgcatt
     3301 aacagcgtgt aatgaagaaa aagcggcaga gccaaaagca actgcggctg aagcaaaacc
     3361 tcaagcaaca aatcaaacag ttcaccttta tacttggact gaatatgtgc ctgaaggttt
     3421 gttagatgaa tttacgaaag aaaccggcat taaagttgaa gtttcaagtc ttgaatctaa
     3481 cgaaacaatg tacgctaaat taaaattaca aggcaaagat ggcggttatg atgtaattgc
     3541 tccatcaaac tactttgtat ctaaaatggc gaaagaagga atgttagcgg aattagatca
     3601 cgcacaactt ccggttatta aagaattaaa ccaagattgg ttaaataaac cttacgatca
     3661 aggaaacaaa tattcattac ctcaattatt aggtgcgccg ggtattgcat ttaatacggc
     3721 agattacaaa ggtgaaacat tcacttcttg gggtgatttg tggaaacctg aatttgcagg
     3781 taaagtacaa ttattagatg atgctcgtga agtattcaac attgcgttat taaaattagg
     3841 taaaaaccca aatacaacta atccggatga aatcaaagaa gcctttgaag agttgaaaaa
     3901 attacgtcca aatgtgcttt catttacctc tgataacccg gcaaactcat ttattgctgg
     3961 tgaggtttct gtaggtcagt tatggaacgg ttctgtacgt attgcgaaga aagaaaacgc
     4021 accggttgat atggtattcc cgaaagaagg tcctgtgctt tgggtcgata ctttagccat
     4081 tccggcaaat gcgaaaaaca aagaaaatgc acataaatta atcaactact tattaagtgc
     4141 aaaagtagct gaaaaattaa cgttagcgat tggttaccca acttcaaacg tagaagcatt
     4201 aaaagtatta ccgaaagaaa ttactgaaga tacagcaatt tacccatctg cagaggtttt
     4261 acaaaaatct caatggcaag atgatgttgg tgatgcaatt gagctttacg aaaaatacta
     4321 ccaagagtta aaagcagcaa aataatagct gattaattct gaagcctcta gggagcaatc
     4381 tttagaggct ttctcttttg agttgcaaaa aatttggcaa aaacgaccgc tttctaaggt
     4441 acaatcataa aaacatactt agattttgag agattaaacc atgaacttaa gatggcaaga
     4501 atatcctgaa aatgcccgca aattatttaa actatcccta cccattttta tttctcagct
     4561 ttcagcttcc ggaatggggc tggcggatat tgtaatggct ggcttggtga gtgatgatga
     4621 tgtctcggcg attgcggtaa gtaattcgat ttactttccg ctctttctgt ttgtgtcagg
     4681 gttgctgaat gcaattaccc caaccgtttc ttacttaaac ggctcgagca atcgccattt
     4741 aattgctaac caagtaaggc agggctattg gattgtgttt gcaatgtcta ttccattaat
     4801 ggcaattttc ctaaacagcc atctgatttt agacttaatg caaacaccgg ctgagttttc
     4861 aatcaaatcg caacaatatt tagcagtaat ggcagttggg cttattcctg ctttgctggc
     4921 ggtgagttta cgttgtatga acgatggatt atctaaccct aaacctgcga tgcggattac
     4981 ctttttcggt ttattgctga acattccgct aaactatatt ttcattttcg gcaaatttgg
     5041 cttgcctgaa atgggagcgg taggctgtgg tgtagcaacc gcaattgtga acttgattat
     5101 gttttttatg ttgttgcatt attgctacac caattctgcc caaaaagata ttcgtttgtt
     5161 tgagaaatgg attgatgctc caagcggtca aattttgcta aaactttgca aattagggct
     5221 gccgattgcc tttgcgattt ttaccgaagt gatgctgttt tcgacctcat cgctgtttct
     5281 gtcaccactt ggttcacagg tggtggctag ccaccaagct gcattgcaaa ccagctcgct
     5341 attttttatg attccgatgt cgtttggcat tgcaaccacc attatgatcg gacaaacact
     5401 tgggcagaaa aatgtggagg gggcgaaaat cttaagttac cacgcactga ttaccgcaac
     5461 cgctttagct attattgccg ccatcattat tattttgttg aaaaatttta tcccttttgc
     5521 gtttaccaac aacccgattt cgattgcgat taccgctcat ttattgattt ttgcggcggt
     5581 ttatcaaata ccggatgcca ttcaagcggt agcaaacggc attctgcgtg gttataaaca
     5641 tacccaaccg attttatacg ttactctgtt ttgttattgg ggggtgagta tgccgctggg
     5701 ctacattttg gcaagaaccg attggattgt acaaccaatg gctgctcaag gtttttggtt
     5761 agtcttttgt atcggcttaa gtttggctgg tggcttgtta ttatggcaaa tgcgaaaaat
     5821 acaagcggtg ccaaaagcac aattaattgc aaaattagaa cggattaaat aacagattct
     5881 ctgctatgga acatagcagt gctttttact tttagaagat aactttgctg atgaaaaacc
     5941 taaatcctat ccaactacct ttgaataaat ccgttttaat cgaagcgtcg gcaggtacag
     6001 ggaaaacctt taccattgcc aacctgtatt tgcgtttatt gctcggcatt ggttgcaacc
     6061 cgttaacggt ggaacaaatt ttggtggtga catttaccaa agcagcaacc gaagagttga
     6121 aaaaccgtat ccgtaaaaat attcagcaat gtgccgactt tttaaaagat caagctgatg
     6181 gtttggaagt ggaaagtaca aaatcctatc gaaacaacct tgattttttg gcacagattt
     6241 atccgctcat tccgaatatt cacgaagcat tgttacgttt aagtattgcc gaacgggaaa
     6301 ttgataccgc cagcgtgttt accattcacg gcttttgtca aaaaatgctg gttcagtttg
     6361 cgtttgagtc gggcgtgcgg tttgacttgg atttacagcc aaaccaaagt gatctactta
     6421 aaaaattaag tgaagaagtc tggcgagagc aattctatcc gcaagattta gccatcactt
     6481 atgcggttgc cgaacaactt ggtacgccgg aatatgccct caatgcggta aggcgttatt
     6541 tatctactga attacctgaa ccaaatgcct ctttaaatca agatattgcc gagcatttgg
     6601 ctcaatatca gcagtttatt aatgaggtga aatcctattg gaaaacgcat tcagatgaac
     6661 tggttgaaac tatccgccac gatttaaagc ataaaattac gctgcacgga ggttggtatc
     6721 gagcgaccac ttttgaagcc ggtgtggaag tgatgaacca gtgggctaat tcgcaacata
     6781 accatttccc ggcagggctt tatttattca ctacagagaa aattgcggct ggcacgaaaa
     6841 agagctgtga gccgatagat tcccctcatc ttgcaaaaaa tcaggctttt ttgaccgctt
     6901 acaaggaacg ttttgaaaac agcttgtcag caatgttgca gtatcaattt ttaattgctc
     6961 tcaaagcaaa attggcagag tacaaacaat cgcacccaca acgcagtttt gatgatttac
     7021 tcacaatgct aaaccaagcg ttgaaaaatc tacacacggg cgaagccttg tctcagaaaa
     7081 ttcgggcgat gtatcctttt gcgatgatcg atgagttcca agataccgat ttaacccaat
     7141 atgaaatttt cagccaaatt tttatggcag agaatgcaga gaacggcttt attatgattg
     7201 gcgacccgaa acagtcgatc tataaattcc gtggggcgga tattttcacg tatttgcgag
     7261 cagcaaagca ggctgatgaa caattcacat tgggcaaaaa ctggcgttcg ttgcctgaag
     7321 tggtgcaagc ggtcaataat ttgttttctt ttgcaaatga taactctccg tttctttatg
     7381 aggatattgg ctttcaccca gtggaggctg atagccaaaa aggtcagtta gttagtgagc
     7441 aagggcattt tgtaggctac atcacggaaa acagtaaatt agatgatttg gctgaaatgt
     7501 gtgcttatca aattcatcaa cagcttgagg cgatggctca aggcaaattc ggagttgaaa
     7561 aaaacggcga atttcaatcc tttgctgcaa aagatattgc gattttagtc cgaaaaggtt
     7621 cacaagctaa gcgaatcaaa aaggcgttgg caaaacgtaa tatcaaatcc gtctatttag
     7681 ctgaatcagc ttctgtattt ggttcggaaa ttgcaacaga attgtgttgg ttattgcaag
     7741 ccgcactgaa tccgtatcat tacaaggcat tattatcggc gttaggctca accttgtggg
     7801 gcttaacggc ggcagagatc caccgctata aggaaaatga gcaactttgg gatctgaaag
     7861 tcaatcagtt tgtggaatac agcaacattt ggaaagagca gggcgttctg ccgatgttgc
     7921 ataaaatcta cttggagcag ggcattatcg aacgtttgaa aggtttggaa aatgcggatc
     7981 gcttgattac ggatttattg catttaaccg aaattttgca ggaaacctcg caagcgttag
     8041 agtctgaagc tgaactgttg cggtggtatg aaaagcaagt taattcgccc gattttaatg
     8101 acgagcaaca acttcggttg gaaagtgaag aggagctaat caaaattgtg acgattcacg
     8161 gctcgaaagg cttgcaatat ccaattgttt ggttaccttt tgtttcacaa aaaagtgagg
     8221 gagacacgca gacagcatta agtttatatc gcaattctca aggtgcgctg gattggtgtt
     8281 taggctcaga agaggcaagt ttttcgctac agtatgaggc ttatgcggaa gatttacgtt
     8341 tgctgtatgt ggcattaacc cgcgcggaat ctcagcttaa cttagtgttg ccgaaagaga
     8401 tttccggctg gtctccactc cattacttgt tagcagacgg ggaaatacct acaggaaaag
     8461 tgcctgtttc agattatttt agccaaaaac ggattgctgc taatttggtt gaagtagccg
     8521 gggaattacc tttctcactg tgggaaggag aacaatcttc agacgattac caagcaaaaa
     8581 cctttagtgg caatatccgt gtggttggtc aaattaccag ctttacttca ctttatgccc
     8641 aacacgagcg ttttagtgaa gggaaatcag aaagggtaat ggatttagcc caagatcgag
     8701 atgtacatat agaaaccatt gaggcaggtt attcaagtga aactgccgct ttctcgccat
     8761 tccaattccc acacggtatt aaagtgggca cggtgttaca tcactttttt gagcattgcc
     8821 aatttaacga acaaattgat agagaggctg ttgctaaagt atgcgagcaa ttagggctaa
     8881 gcgaggaatg gattgaacca acagcattat ggtttgagcg tattctaact acccctttgg
     8941 cagaggcaaa tttctgctta aaagcgattg atgaaaccaa acgattaaac gagtggcaat
     9001 tctatttacg cttaaaaaat gataaagcct tacatcaatt aaatgcgtta ttaaagcaac
     9061 atagcccttt agcaaaaact ttacctgaat tgcaattacc gcaattagaa ggttttgtgc
     9121 gaggctttgt agattgtatc gtgcaagtgg aggagaaatt ctacttaatt gattacaaat
     9181 cgaatttctt aggctatctg ccacaaaatt atgcgaaaga acacattcaa cgggaaatgg
     9241 gcagacaacg ctatgatttg caatatctgc tttacactct cgccttacac cgttatctaa
     9301 ctgcccgttt aggtgaaaaa tacgattatg aacgagactt cggcggagtg gcttacttgt
     9361 tcttaagggc aatgaacggc gaaaatgata acggcgttta ttttgacaag ccgactaagc
     9421 agttgattga agaaatggat cggttgtttg ggtaaatatg tgtaggggcg aaaatttttc
     9481 gcccctttat gggtaattaa ctcgcttgct cataccaaat cttattgata taaagcaaca
     9541 ctttaccaag cggagtttct accctaattt catcatcaac ctgtttgccg attaaggctc
     9601 gggcgacagg ggagtcaatc gaaatccagt tttttgctgg gtcgaactca tcgcaaccaa
     9661 caatacggta ctgttttgcc tcgccctctt cattttctaa ttccacccaa gcgccgaaaa
     9721 agactttgcc ttcttgttta gggtgataat caacaatttg tagcacctct agccgcttag
     9781 ataaaaaacg cacacggcgg tcgatttctc tcaaacggcg tttgccgtaa atatattcgg
     9841 cattttcgct tcgatcaccc aatgcggcag catcagacac cgcttgagtc actttcgggc
     9901 gttcttcccg ccatagaaat tttaattcct gatctaaggc ttgccagcct gaacgggtaa
     9961 tgtaatttga tttagccata gttatttaat tgtttatgga gcaaatagtg atttgcccct
    10021 acgaagtttc tattttgaaa gcaataaatt cgctactgtt cttattccca gtccggttgc
    10081 tcctgccgcc cataaatcgc tcgccgtttt gcggaatgtg gcagaggcgt caatatgtag
    10141 ccagttttgc tggtagtttt ctacaaagta agataaaaat gcggtggcgg tacttgcccc
    10201 agcccccacc ggcacagagc cgatattggc gatgtctgca aaggaagaag caatttgccc
    10261 acggtgaaat tcttcaaacg gtaaacgcca gaacggttca ttttccgttt tggcagactt
    10321 aaatagtgct tcggttaggt tgtcgtccat tgaaagcacc gagtggtagt cattgccgac
    10381 tgcgactttt gctgctcctg tgagggttgc agcatcaata ataaattgtg gattttgctt
    10441 gcacgcatca attaaaccat cggcaagcac taaacgccct tcagcatcgg tgtttaaaac
    10501 ttcaacagtt acgccattgc ggtaagtgat aatatcgcct aatttgaacg cattgtggct
    10561 gaccatattt tccgcacagc agaggtagag tttcactcgt ttattcaagc ctcgagcaat
    10621 ggcaaaagca agtgagccgg ttaaaagtgc cgctccgccc atatcggttc gcattgtgct
    10681 catactatcg cttggtttta gactataacc gccggtgtca aaggtaatgc ctttgccgac
    10741 caagcaagcc agtacctgtg cgttttcatc gttggttggg ttgaagtcta atactaagaa
    10801 tgcaggcgga ttggcagagc cttttccaac tgtccaaatg ccgtgatagc cttgttcttg
    10861 taatgcttcg ccacgaatga tctggtaaga aaccgtattc ggttttgcca ttttttggat
    10921 aaactcgacc gcttgttcgg ctaatttttc aggggttaat ttatctgatg gcttattaat
    10981 taattcacgc acgaaagtgg cacattttac acggttatca aattcggctt gctgttcgtc
    11041 taagtctggg tattgtaccg agccttgatt ttttaccgaa tgaaatcctt gatgaaacgc
    11101 ccagcaggat tctaaatccc aactatcgcc ggtcagctcc acggttgaaa taccttgatt
    11161 tttaattttg cgggcggctt tttgaatagt ggctaaatcg ttgttcggat tatgtacggt
    11221 aaaccccgca tcatttgcgg aaagaatagc atttttaccc caaatttcag gggcgttttg
    11281 agtagaaagt gaaattttca ttgctgtcat tatcggtttc cttagaaaat ggattttgct
    11341 ttatcctaac aaacttttgc aaagttttat acaaaaatga ccgcttgcag agcatagcct
    11401 tgacaagcgg tcattgtttc gtgtttttac aacctgatta aggacggatt atttgccgtc
    11461 ccaagcttta attgcattgt ggcggatttt aacacggctt tcagcattgc ctttgtagta
    11521 atctttatct aaaccgcctt cccagtcgcc atagttcggg ttcggtaaca taatgaattt
    11581 tttaccgaat tgttggctgt tttcggctac gaatgcacgg cgttccgcgt ttgatttacg
    11641 gtaagtcgca tcgccgaaat cgtttaagtt gtcgccaata tagagcacga tttcatagcc
    11701 ttgtttttcg atttcttcaa agcgaggggt tttgttcgat ttgtcttttt tcaacaagag
    11761 tgtttgttcg ctcacaccac taaagcctaa tttgttcata tcatcaatag taccggcttt
    11821 ttcactgctg tctttacggt ttgaaacata gaacatagtt cctttgtggc tattaacgta
    11881 gttgttaaat tccactgcac cggcaatcgc tccggtttgg cgggcattta cccaacgagt
    11941 ccagctttca ccatcaaacg gcttgtggtt tttaacctgc cagccggcat aaaggctgtt
    12001 gtccaccata gtttcatcta aatctactac cacggctttt ttcttgcctt ttttcacttt
    12061 ggcttggtcg aatgccactt tcgctgcatt gaatgcttga tgggcaagag cttggtattc
    12121 gccggattgt tgcatccagt ttatccctaa tgtagcttgc tcttgcaaca ccatttgatg
    12181 atgctcatcg ctgtttttat gcgtgtgcga acaagcagtt aatacaaata aagctgtgag
    12241 gctcatagca gaaagtttga tgtttttcat acgtatatcc ttagttttat tgttgataaa
    12301 cagagcgatt atacctaaaa agagttgctt atggctaata gtttattgct cctattcact
    12361 tttaaagcaa actaaggtag cctagtaacc tttttataac aattacacag aggctatatg
    12421 caaacattat taaaatttac acaatttatc agcaaaacct tcgccatttg ggtggtgttt
    12481 tttgctttta tcgcagcaca atttccggaa acctttaagc aattcctgcc ttggattcct
    12541 tatctgttag ggattgtgat gttgggaatg gggttaacct taactttcaa agattttgcc
    12601 gaggtaacga aaaatccgaa atcagtgatt atcggcgtga tcgctcaatt cgtggtatgc
    12661 cgagtgtagc ttatggattg gcaaaagcat ttaacttacc cgcagattta gccattggtg
    12721 tgattttagt tggttgttgc ccgggcggta cttcttcaaa cgtgatgacc tatttggctc
    12781 gtggcaacac agcgttatcg gtagcttgta ccactatttc aactttactt gccccagtgc
    12841 tcacgccggc aattttctat ttatttgcca gccaatggtt agaaattaat gcaacggcaa
    12901 tgtttatttc ggtgttgcaa atggtgctat tgccaatttt tgtgggcgtg gtgattcgta
    12961 ctattttcaa acaaaaagta gagcaattta gccaaacaat gccattaatt tcagtgattg
    13021 caatcgtatt aattgtcacg gcggtggtgt cagttagccg agatcgtatt attgaatccg
    13081 gtttattaat ttttgcggta gtagcattac acaacggttt aggttattta atcggttatt
    13141 tggcgagccg tttattaaaa ttaccgattg cagacagcaa agcggtggcg attgaagtgg
    13201 ggatgcaaaa ctcaggattg ggggcagcac ttgccgcatt acactttaaa gccaacccta
    13261 tcattgcggt gccaagtgcg gtatttagct tctggcacaa tatttcaggc ccgattttgg
    13321 cgatgatttt cgctaaaatg aaaaacgata acgaaaaata aaattcgttt taatacagac
    13381 gttttaatgt tttaataaag aatagacaaa cggttaaatt tttctaattt tttgcaaaat
    13441 gttcagaaaa tttaaccgct tgttgtttag aatttagaac attcttggtc cacgtgcagt
    13501 gctgattttt tcatcatccg ctctttgggt aacaatcact tgatcaccct catttaagcc
    13561 tgctaatact tcggtatttt gcgtatccga aatgccaatt tggatttttc tttcaaccga
    13621 ctgctcattt tccagcacca acacataatt ctctttacca cgttttttga ttacgctggt
    13681 gggtacaact aaaacctgtt cccgtttatc aatagtaatt tgggcttgag tagtcattcc
    13741 gatgcgtaaa ctgttatcgg cattatcaac ggaaacatta gcgtagtaat aaaccgcttc
    13801 ggtattaccc gattgttcgg tgtagttatt atcggtcagc gtggtgagtg ccg
//
LOCUS       DANLRW010000070        13652 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.070, whole genome shotgun sequence.
ACCESSION   DANLRW010000070 DANLRW010000000
VERSION     DANLRW010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13652
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.070"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..186
                     /locus_tag="PXA71_001699"
     CDS             <1..186
                     /locus_tag="PXA71_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDL5105796.1"
                     /translation="DQRGKCALCGLPITKETGWHDHHIVYKMLGGSDALSNRCLVHPT
                     CHIKIHTLNLEVVKPAI"
     gene            375..1151
                     /gene="yaaA"
                     /locus_tag="PXA71_001700"
     CDS             375..1151
                     /gene="yaaA"
                     /locus_tag="PXA71_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005622827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HDL5105797.1"
                     /translation="MLAIISPAKTLDFKTNIDGFAFSQPNLTACSQELIDICKQLSPA
                     ELGSLMSISDKLAALNVARFAEWQLEHNEQNAKAALFAFKGDVYTGLEAETLSKAQVE
                     YAQQHLRMLSGLYGLLKPLDLMQPYRLEMGTKLANPKGKDLYAFWGNIITENLQQAID
                     EQGDDILVNLASDEYYGAVKPQNLNATIIKPVFLDEKNGKYKVISFYAKKARGMMVRF
                     ILDTQPTSIEQLKQFNYGGYWFDADSSSESELVFKREEQA"
     gene            1151..1714
                     /locus_tag="PXA71_001701"
     CDS             1151..1714
                     /locus_tag="PXA71_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATPase"
                     /protein_id="HDL5105798.1"
                     /translation="MSAIKKGITLVALSLAGCVSQSPQFAVPDAIHFGQDTFVKVTHS
                     QIDEMQHLLYLPEKSEKNPENWQKGILFFLDKNSKNQTLEQRAAFRQASFAKKPELEA
                     KVEIQQNELHSSVIYPPIERFNNVMLEVTRGRNLACGYGQIQFADKREVGKTVAKKSP
                     NLTAYSQEIARLSLELNQLGWQVQCSK"
     gene            1723..2628
                     /locus_tag="PXA71_001702"
     CDS             1723..2628
                     /locus_tag="PXA71_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HDL5105799.1"
                     /translation="MNEKYSKLVKNAANLAIIVAILLIVIKAFAWWKTGSISILAAMT
                     DSVVDLFASLTNILVLRFALQPADENHAFGHGKAESLAALAQSAFISGSAVFLLLQGF
                     HKLTNPELIAQSSIGVIVSIVSIVITALLVFYQRYVVTLTKSPAIEADSLHYQTDLLM
                     NAAILVAMLLNSAGFVYADAVFAIGIALYIAFNAVKMFWCAVQTLLDQALPDEEIERI
                     KEIASQHPNILGIHDILTRRAGAVRFIQLHLELDDHLTLLVAHEITDSLEQKLLAAFP
                     MSHVIIHQEPTTVVKQEFQDMAENI"
     gene            2628..3380
                     /locus_tag="PXA71_001703"
     CDS             2628..3380
                     /locus_tag="PXA71_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-ribbon-containing protein"
                     /protein_id="HDL5105800.1"
                     /translation="MYQAIVHFSYHNFEQDPVTAISQILNQWLYNGQVIGREMPITFH
                     QNEFQARVCVPTQESLLPQYNSDEVNEALQQAVEIGVIFASFELVGRDYQGEESSHNR
                     SPAFQILYTTHLDTCSPLYDGEQFAPIPLYSLQDQSLSEAILEWQQNWQACDLLQMNG
                     NLLECHALVQISDETSDLAMIGRDLCQQIEQKTHIPTFYYLYRLGRDESEYQRKCPCC
                     GGEWKLTEPLHDIFHFRCEPCRLISNLSWELL"
     gene            3481..4806
                     /locus_tag="PXA71_001704"
     CDS             3481..4806
                     /locus_tag="PXA71_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HDL5105801.1"
                     /translation="MLIFNLIVFAAILFLLAKIYKSTQKLGQTVFIGLFLGLASGAFL
                     QTFYEKATVDATLDWINLIGNGYVRLLQMIVMPLVFVSILSAITRLKEAGSLGKISFS
                     VLSVLLVTTAIAAAIGIALVYLFDLSAEGLVAGSRELAAQEKVVGRVEQVSNLSVPSM
                     LLSFIPKNPFLELTGANPTSIINTVIFSALLGIAALSLGKEDKALGERIAQGVETLNK
                     LVMRLVRFVIRLTPYGVFALMIKMAATSQWSDIVNLGSFIVASYIAIGLMFIVHGILL
                     FVAKINPLDYYKKVLPTLSFAFTSRSSAATIPLNIETQTNKLGNNSVIANFSATFGAT
                     IGQNGCAGIYPAMLAVMVAPTVGMDPFSLNYILTLILVVAISSFGIAGVGGGATFAAI
                     VVLSTLNLPIELVGLLISVEPIIDMARTALNVNGAMVAGTLTNKWVKAE"
     gene            complement(4866..5525)
                     /locus_tag="PXA71_001705"
     CDS             complement(4866..5525)
                     /locus_tag="PXA71_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDL5105802.1"
                     /translation="MFNISKQQVLDAFHFRSACRSYDPNKKINKEDMDYILELGRLSP
                     SSVGSEPWKFLVLQNPETRQKIAPVSWGIKHPMEEMSHLVVILTKKNVRYDSVYMRDM
                     LAKRGLTYEQIEASLVRYKSFQEEDMKLLSERELFDWSTKQTYIALGNMMTGAALIGI
                     DSCPIEGFHYDTVNQILSDEGLFDLNEYGVSCMITFGYRNKEIKKKSRKPTEEVIAWI
                     E"
     gene            5754..6740
                     /gene="pheS"
                     /locus_tag="PXA71_001706"
     CDS             5754..6740
                     /gene="pheS"
                     /locus_tag="PXA71_001706"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDL5105803.1"
                     /translation="MQHLKDLTNKAREALDKIDQNLEALEEFRVEYFGKKGHFTTLMQ
                     ELRNIAAEERPAIGAKINEAKQVVLDVLNAKKEEWEQAVLNAKLANESIDVSLPGRKT
                     ELGGLHPVSITIERVVKFFSELGFTVANGPEIETDYYNFDALNIPDHHPARADHDTFW
                     FDANRLLRTQTSGVQIRTMENVKPPIRIVAPGRVYRNDYDQTHTPMFHQIELLYVDKE
                     ANFTELKGLIHDFLKAFFEEDLQVRFRPSFFPFTEPSAEVDVMRQNGKWLEVLGCGMV
                     HPNVLRNVGIDPEEYSGFAVGMGVERLTMLRYNVTDLRSFFENDLRFLKQFK"
     gene            6788..9175
                     /gene="pheT"
                     /locus_tag="PXA71_001707"
     CDS             6788..9175
                     /gene="pheT"
                     /locus_tag="PXA71_001707"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDL5105804.1"
                     /translation="MKFNESWLREWVNPAISTEQLCDQITMLGLEVDDVEPVAGAFSG
                     VVVGEVVECAQHPDADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVACAVEGAVLPGD
                     FKIKKTKLRGQPSEGMLCSYSELGIKEDHSGIIELPADAPIGQDFREYLNLNDVAIEI
                     SLTPNRADCLSIAGIAREVGVINRVDVKAPTITDVKATISDKVSVELQAPEACPRYLA
                     RVVKNVNVKATSPLWLQEKLRRCGIRSIDPIVDITNLSLLELGQPMHAFDAAKIEGGI
                     QVRMAKEGEELVLLDGTNAKLQSNTLVIADSKGALAMAGIFGGEASGVSENTKDVVLE
                     SAFFAPLAITGRARQYGLHTDASHRFERGVDPELTRQAMERATALLLEICGGEAGEIV
                     EAVSQENLPKRNTVTLRRSKLDSVIGHHIDDATVTDILTRLGLNVTFADNSWTAIAPS
                     WRFDIEIEEDLIEEIARIYGYNSIPNNSPLAHLTMKGTPEKLLEANRIRMALVDSDYQ
                     EVITYSFVDPKKQSLLHPQQEALILPNPISSEMSAMRVSLLTGLLDTIVYNQSRQQNR
                     VRIFEAGLRFIPDSNAESGVRQEFVFGAAIVGDKRPVHWENKSEAADFFDLKGDIERI
                     LSLTSIRHDLQFVAKQFPALHPGQSAAIMLDGKEIGFIGTVHPSIVQKFGIKGKPIVC
                     EILASAIAERPVTQAGEISKFPANNRDIAVVVDESVPAGEVLEACRKAGGNKLVAVNL
                     FDVYRGSNLESGKKSLAISLTVQDNEKTLEENEINAVIQAVLAELATRFNAVLRD"
     gene            9233..9529
                     /locus_tag="PXA71_001708"
     CDS             9233..9529
                     /locus_tag="PXA71_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HDL5105805.1"
                     /translation="MALTKIEIAENLIEKFGLEKRVAKQFVELFFEEIRSSLENGEEV
                     KLSGFGNFSLREKKARPGRNPKTGENVAVSARRVVVFKAGQKLRERVEQASSQS"
     gene            9568..10089
                     /locus_tag="PXA71_001709"
     CDS             9568..10089
                     /locus_tag="PXA71_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5105806.1"
                     /translation="MKLTKRWLSLGCLLAITAMLVACSSSDTTSKSQVKSKVYRSIYQ
                     SDLSDPIMAISRLSEHQHEWKGTRYRLGGNSKAGIDCSGFMQVTFKDLFGIDLPRTTT
                     EQAKAGERISKDELRTGDLVFFKTGRGPNGKHVGVYVKNGQFLHASTKGGVIYSDLDS
                     PYWSKAFWQARRL"
     gene            10105..11148
                     /gene="degS"
                     /locus_tag="PXA71_001710"
     CDS             10105..11148
                     /gene="degS"
                     /locus_tag="PXA71_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HDL5105807.1"
                     /translation="MLKKIGQAVIFGLFCAILILFVAPIIQSKGSSFSLSAFTQKEIV
                     SYNAAVKIASPAVVNVYSRNFSSENETFEVKNLGSGVIMSSDGYILTNRHVIEDADQI
                     VIALQNGAISTNVKLVGDDSLTDLAVLKIEGENLPTIPQNPERKLQIGDVVLAIGNPL
                     NLGQSITQGIVSAIGRKTLTESGRQNFIQTDVSINQGNSGGALINTAGELIGINTLRF
                     GKNTNELSEGLNFAIPINLANQIMSKIIKDGRVIRGYFGVSTDLLDTAKMQGYEKGVI
                     IVNVDKNGPAAKAGIQAGDLVLKVGDIEAFSPSQMMEELAEMKPYTTVKVLVQRDEQL
                     LNFDVTITELQTQ"
     gene            11157..11831
                     /gene="cmk"
                     /locus_tag="PXA71_001711"
     CDS             11157..11831
                     /gene="cmk"
                     /locus_tag="PXA71_001711"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HDL5105808.1"
                     /translation="MKKIVITVDGPSGAGKGTLCHALAEKLGFDFLDSGALYRITALS
                     AIKKEVPLDDEEKLAEVGRNLDIQFLPENGEIQVILEGENVGDLIRTAEAGQNASKVA
                     AFPLVREALLERQRAFSSEKGLIADGRDMGTVVFPDAQIKLFLDASAEERTKRRVKQL
                     QEKGFNANFDEILAEIKERDFRDRNRSVAPLVPAKDALLLDSTHLSIEDVINQALNHI
                     AQYIKF"
     gene            11923..13590
                     /gene="rpsA"
                     /locus_tag="PXA71_001712"
     CDS             11923..13590
                     /gene="rpsA"
                     /locus_tag="PXA71_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDL5105809.1"
                     /translation="MSELSFAQLLEESFAATPRLGDVVKGTVVAIQKGLVIVDTGFKS
                     ESAIDASEFTNAQGELEVQVGDEVDVVLKAVEDGFGATVVSRGDAKRNEAWIALEKAF
                     EEQATVIGFVNGKVKGGFTVELNGVRAFLPGSLVDTRPVRDSLNLEGKEYEFKVIKLD
                     QKRNNVVVSRRAVIETESNQDRDAVLANLVEGSEVKGTVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEVVNVGDEVTVKVLKFDKDKTRVSLGLKQLGQDPWAVIAENHPV
                     NSKLTGKVTNLTDYGCFVEILDGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLE
                     VDEERRRISLGLKQCKANPWEQFAATHSKNDKVSGKIKSITDFGIFIGLEGGIDGLVH
                     LSDISWNVSGEEAVRNYKKGDEVEAVVLQVDAVKERISLGIKQLESDPFTNFVDGTKK
                     GAILTGKVVEVDAKGVKVELEGGVEAFIRANEATAERVEDITSVISVGDSIEAKYTGV
                     DRKSRVVNLSVRAKNEAEESAAIAQVNKEEVVVPNAFAEAFKAAKGE"
BASE COUNT         4105 a         2368 c         3110 g         4069 t
ORIGIN      
        1 gaccagcgtg gaaaatgtgc attatgtggg ttgccaataa ccaaagaaac aggctggcac
       61 gatcatcata tcgtgtacaa aatgttagga ggaagcgatg cattaagcaa tcgttgtttg
      121 gtacatccga cttgtcacat aaagattcat actttgaact tggaggtcgt gaagccggct
      181 atatagctga tgaaaggctt gagctgtatg cagagaaatt tgcttgtaca gttcttaggg
      241 ggcggaggtg cagtaatgta ctttcgctac ccgacttttc ttttcgtttt caagaaggca
      301 gggtttcctg ccttttttgt ctttatgact gtggtagaat aaccgccctg attaactatt
      361 tgatagaggc atttatgtta gccattattt cccctgccaa aacccttgat tttaaaacca
      421 atattgacgg ttttgcattt tctcaaccaa atttgaccgc ttgtagccaa gaattaattg
      481 atatttgtaa acagctttca cctgctgaat taggtagttt gatgtcaatt agcgataaat
      541 tagccgcttt aaatgtggct cgctttgccg agtggcagct tgagcataac gaacaaaatg
      601 ccaaagccgc cctctttgcc tttaaaggtg atgtttatac cggactagag gcagaaacgt
      661 taagcaaagc acaagttgaa tatgctcaac aacatttgcg tatgctttca ggcttgtatg
      721 gtttattaaa gccgttagat ttaatgcagc cttatcgttt agaaatgggc actaagttag
      781 ccaatccgaa aggcaaagat ctttatgctt tctggggcaa tattattact gaaaatttgc
      841 agcaagcgat tgatgaacaa ggcgatgata ttttagttaa tcttgcctct gatgaatatt
      901 atggtgcggt taagccacaa aatctaaatg cgactattat caagccggtg tttttagatg
      961 agaaaaacgg taaatataaa gtgatcagct tctatgccaa aaaagcccgt ggaatgatgg
     1021 ttcgctttat attagacacc caaccgacta gcatcgaaca gctcaaacag tttaactacg
     1081 ggggctattg gtttgatgca gacagttcta gtgaaagcga gctagtcttt aaacgtgagg
     1141 agcaggcata atgtcggcta tcaaaaaggg aataactttg gttgcgttat cattggcagg
     1201 ttgtgtcagc caaagcccac aatttgcagt gcctgatgct attcactttg ggcaggatac
     1261 ttttgtaaaa gtcacccaca gccaaattga tgaaatgcaa catttacttt atttgccaga
     1321 aaagagtgag aaaaatccgg aaaattggca aaaaggcatt ttatttttct tagataaaaa
     1381 cagtaaaaat caaaccttag agcaacgagc tgcattccgc caagcaagtt ttgcgaaaaa
     1441 gccggagctt gaggcgaaag tggaaattca gcaaaatgaa ttacacagca gtgtgattta
     1501 tccacctata gaacgtttta acaatgtgat gttagaagta acccgtgggc ggaatttagc
     1561 ttgtggttac gggcagattc aatttgcaga taagcgggaa gttggcaaga cagttgcaaa
     1621 aaaatcgccg aatttgaccg cttacagcca agaaattgct agactttctc ttgaattaaa
     1681 ccaactgggt tggcaagtcc aatgcagtaa ataatgtagt aaatgaacga aaaatacagc
     1741 aaattagtca aaaatgcagc gaatttagcg attattgttg cgatcttact gattgtgatt
     1801 aaagcctttg catggtggaa aaccggttcg atttcaatct tggcagcaat gacggattcg
     1861 gtagtggatc tgtttgcttc gctaaccaat attttagtgc tgcgttttgc actacaaccg
     1921 gcagatgaga atcacgcgtt tgggcacggc aaagcggagt ctttggcggc acttgcccaa
     1981 agtgcgttta tttccggctc ggcggttttc ctactgctac aaggtttcca taaactcacc
     2041 aatccggaat taattgctca atcgagtatt ggggtaattg tcagtattgt atcaattgtg
     2101 attactgcac ttttagtctt ttatcagcgt tatgttgtca cgcttacgaa aagtccggcg
     2161 attgaagcgg attcgttaca ttaccaaact gatttattaa tgaatgcggc aattttagtg
     2221 gcaatgttgc ttaatagtgc cggttttgtg tacgccgatg cagtttttgc aataggtatt
     2281 gccctctaca ttgctttcaa tgcagtaaaa atgttttggt gtgcggtgca aaccttgcta
     2341 gaccaagctt tgcccgatga agaaattgag cggattaaag agattgcttc gcaacatccg
     2401 aacattttag ggattcacga tattctaacc cgccgtgcag gtgcagtgcg ttttatccaa
     2461 ttacatttgg aattagacga tcacttaacg ctgctagtag ctcacgaaat aactgatagc
     2521 cttgagcaga aattgctggc ggcatttccg atgtctcacg tgattattca tcaagagccg
     2581 actacggtgg tcaaacaaga atttcaagat atggcggaga atatttaatg tatcaggcga
     2641 tagtgcattt cagctatcat aattttgagc aagatccggt gacggcaatt agccaaatct
     2701 taaatcaatg gttatataac gggcaagtca ttggcagaga aatgccgatt acttttcatc
     2761 aaaacgagtt tcaagctcgg gtttgtgtgc ctacacaaga aagccttttg ccacaatata
     2821 atagtgatga agtaaatgaa gcgttgcaac aagcggtcga aatcggcgta atttttgcaa
     2881 gttttgagct tgtcgggcga gattatcagg gcgaagaaag cagtcataac cgctcgccag
     2941 cgtttcaaat attatatacc acccatttag atacctgctc gccactttat gatggagagc
     3001 agtttgcccc aattccgctt tattctttac aggatcagtc tcttagcgaa gcgatattgg
     3061 aatggcagca aaattggcaa gcgtgcgatc tgctacaaat gaacggcaat ctgctggagt
     3121 gccacgcact tgttcaaatt agtgatgaaa caagcgatct tgcaatgatc ggtcgagatc
     3181 tatgtcagca aattgagcag aaaactcaca ttcccacctt ttattacctc taccgtttag
     3241 ggcgtgatga aagtgaatat caacgcaaat gcccttgttg tggcggagaa tggaaattaa
     3301 ctgagccgtt gcacgatatt ttccatttta gatgtgagcc ttgccgtttg atctctaatc
     3361 taagctggga attattataa cttttagtta taccaaagta ataaatcatc ttgaatgaat
     3421 gccgcaagcg taataccctt gcggcatttt tataataagc ggttttactt tggaggttct
     3481 gtgcttattt tcaacttaat tgtctttgcg gcaatattat ttttattggc taaaatttat
     3541 aaatctacgc aaaaactcgg tcaaacagtg tttattgggt tatttttagg gcttgcaagc
     3601 ggtgcttttt tgcaaacttt ttacgaaaaa gctactgttg atgcaactct tgattggatt
     3661 aacttaattg gtaacggtta tgttcgcttg ctacaaatga tcgtaatgcc attggtgttt
     3721 gtctctattt tatcggcaat tacccgctta aaagaggcag gatctttagg caaaattagt
     3781 tttagtgtgc tatcagtgtt attagtgacc accgcgattg ccgcagcgat tggtattgct
     3841 ttagtgtatc tgtttgattt atctgccgag ggtttagtcg ccggctcccg tgagcttgcc
     3901 gctcaagaga aagtggtagg gcgtgtggag caggtgagca acttatctgt gccttcaatg
     3961 ttgctttctt tcattccgaa aaatccgttt ttagaattaa ccggtgcaaa cccaacgtcg
     4021 atcatcaaca cggttatttt ctcggctctg ctaggcattg ctgcactgag cttaggcaaa
     4081 gaagataaag cgttgggcga acgtatcgca caaggtgtag agaccttaaa taaactggtt
     4141 atgcgtttag tacgttttgt gattcgccta accccttatg gcgtatttgc gttgatgatc
     4201 aaaatggcgg caacttctca atggagcgat attgtaaatt taggtagctt tattgtggca
     4261 tcatacattg cgattggttt gatgtttatt gtgcacggta ttttactctt tgtggctaaa
     4321 atcaacccgt tggattacta caaaaaagtg ttgccgacat taagttttgc ttttacgtct
     4381 cgttccagtg cggcaaccat tccgttgaat attgagacgc aaaccaataa attaggtaat
     4441 aacagtgtga ttgccaactt ttctgcaacc tttggggcaa ccatcgggca aaatggctgt
     4501 gcgggaattt atccggcaat gttggcggtg atggtcgctc caacagtggg aatggatccg
     4561 tttagcttaa actatatttt aaccttgatt ttggtggtgg caatttcctc atttggcatt
     4621 gccggtgtag gtggtggtgc aacttttgcg gcgattgtgg tgctatcaac cttgaatctg
     4681 ccgattgagt tagtaggctt gctcatttca gttgagccga ttattgatat ggctcgcacc
     4741 gccttaaacg tgaatggtgc aatggtggcg ggcacattaa ccaataaatg ggtgaaagcc
     4801 gagtagtcaa aactaaagat ataaaaatgg gcgattaatt cgcccgtttt tataagttaa
     4861 ggtgattatt caatccacgc aatcacttct tcggtaggtt tgcgggattt tttcttaatt
     4921 tctttgttgc gatagccaaa agttatcata caagacacac catattcgtt taggtcaaat
     4981 aagccttcgt ccgataaaat ttggtttacg gtatcgtaat gaaaaccttc aatcgggcaa
     5041 gagtcaatac caatcagagc cgcaccggtc atcatattgc ctaatgcaat ataggtttgc
     5101 ttggtactcc aatcgaataa ttcacgttca ctaagcaatt tcatatcctc ttcttggaac
     5161 gacttatagc gtaccagcga ggcttcaatc tgctcatagg ttaagcctcg tttggctaac
     5221 atatcacgca tatagacaga atcataacgg acattctttt tggttaaaat caccactaaa
     5281 tggctcattt cttccattgg gtgtttaatt ccccacgaaa ccggggcgat tttctgacgg
     5341 gtttccgggt tttgtagcac taaaaatttc cacggttcag aaccgacaga gcttggtgag
     5401 agacgcccga gttccaaaat ataatccata tcttctttgt tgattttttt gtttggatcg
     5461 taactgcgac aggccgaacg gaagtgaaaa gcgtctaaaa cttgctgttt gctaatatta
     5521 aacatcgttt ttccttttat aagtgaaata agtagattaa tgataacttg atttagagca
     5581 gaatgcgaat ttcacgcctg ttaatttgca aaaaattagg aaaaaatgac cgcttgttta
     5641 aaattgcttt accttaaaaa tcaatcattt aacgaatcgg ttgatttact ttttctggct
     5701 aaagtattat tattcatgaa attttttatt tcattgagtt tagaggatag gtaatgcaac
     5761 acctaaaaga tttaactaat aaagcacgtg aagctttaga taagattgat caaaatttag
     5821 aggctttaga agagtttaga gtcgaatatt ttggtaaaaa agggcatttt acaacgttaa
     5881 tgcaagaatt acgcaatatt gcagcggaag aaagaccggc aatcggagca aaaattaatg
     5941 aagcaaagca agttgtgctt gatgtgttaa atgccaaaaa agaagaatgg gaacaagctg
     6001 tattaaatgc aaaattagct aatgagagca ttgatgtttc actgccgggg cgtaaaactg
     6061 aattaggtgg tttgcaccct gtttctatca ctattgagcg tgtggtgaaa tttttctctg
     6121 aattaggttt taccgtagca aacggacctg aaattgaaac cgattactat aacttcgatg
     6181 cgttaaacat tccggatcat catccggctc gagcggatca cgatacgttt tggtttgatg
     6241 ccaatcgttt attaagaacc caaacctcgg gtgtgcaaat ccgtacaatg gaaaatgtaa
     6301 aaccgcctat ccgtattgtg gcaccggggc gtgtatatcg taatgactac gaccaaaccc
     6361 acacaccgat gtttcaccaa atcgaattgt tatatgtgga taaagaagca aactttaccg
     6421 agttaaaagg cttaattcac gattttctca aagcattctt tgaagaagat ttacaagtgc
     6481 gtttccgccc gtcattcttc ccattcactg agccttctgc agaagtagat gtaatgcgtc
     6541 aaaacggcaa atggttagaa gtgttaggtt gcggtatggt acacccgaat gtgttacgca
     6601 atgtagggat tgaccctgaa gaatatagcg gttttgctgt gggaatgggc gtcgagcgtt
     6661 taacgatgtt acgctacaat gtcacggatt tacgttcatt ctttgaaaat gacttacgtt
     6721 tcttaaaaca atttaagtaa tacaagcggt taaaaattta gaaaatttta caaataggat
     6781 agaaataatg aaattcaatg aatcttggtt gcgtgaatgg gtaaacccag caattagcac
     6841 agaacagtta tgcgaccaaa ttacaatgtt agggttagaa gttgacgatg tagagccggt
     6901 agctggtgcg ttttcgggtg tagttgtggg tgaagtggtg gaatgcgccc agcacccgga
     6961 tgctgacaaa ttgcgtgtca ctaaagtgaa tgttggtggc gaacgtttat tagatattgt
     7021 ttgtggtgca ccaaactgcc gtcaaggttt aaaagtggct tgcgctgttg aaggtgcagt
     7081 gctaccgggc gatttcaaaa ttaagaaaac caaattgcgt ggtcagcctt cagaggggat
     7141 gttatgttct tactcagaac ttgggattaa agaagatcat agcggtatta ttgaattacc
     7201 tgctgatgca cctattggtc aagatttccg tgaatattta aatttaaatg atgtggcgat
     7261 tgaaatcagc cttacgccaa accgtgccga ctgcttaagc attgccggca ttgctcgtga
     7321 agtgggggtg attaaccgtg tcgatgtgaa agctccaact attacagatg taaaagccac
     7381 gatttcagat aaagtttcag tggaattaca agcaccggag gcttgccctc gctatttagc
     7441 ccgtgtggtg aaaaatgtga atgtcaaagc gacatcgcca ctttggttac aagaaaaatt
     7501 acgccgttgt gggattcgct caatcgatcc aatcgttgat attactaact tgagcctttt
     7561 agaattaggg cagccaatgc acgcctttga tgcagcgaaa attgaaggtg gcattcaagt
     7621 gcgtatggca aaagaaggcg aagaattggt attgctagat ggcacaaacg ctaaattaca
     7681 atcgaatacc ttagtgattg ctgatagcaa aggggcattg gctatggcag gtattttcgg
     7741 tggcgaagcc agcggggtga gcgagaatac gaaagatgtg gtgttagagt ctgcattttt
     7801 tgctccatta gcgattaccg gtcgcgctcg tcaatatggg ttacataccg acgcatcaca
     7861 ccgttttgag cgtggggttg atccagaatt aactcgtcaa gcaatggagc gtgcaacggc
     7921 attattactg gaaatttgcg gcggtgaagc aggtgaaatt gtggaagccg tgagccaaga
     7981 aaacctacca aaacgcaata ctgtcacgct tagacgcagt aaattagatt cggtgattgg
     8041 tcatcatatt gacgatgcaa cggtaaccga tattttaacc cgcttaggct tgaacgtaac
     8101 atttgcggat aatagttgga cggcaattgc tccaagttgg cgttttgata ttgaaattga
     8161 agaagattta attgaagaaa tcgcgcgaat ttatggctac aacagtatcc caaataattc
     8221 gccacttgct catttaacga tgaaaggtac gccggaaaaa ttactggaag caaaccgtat
     8281 tcgtatggca ttggtagata gtgattacca agaagtgatt acttatagct ttgttgatcc
     8341 gaaaaaacaa tcattattgc acccacagca agaagccttg attttaccaa acccgatttc
     8401 aagtgaaatg tcggcaatgc gtgtttctct tttaaccggt ttgttggaca ctatcgtgta
     8461 taaccaaagc cgtcagcaaa accgtgtgcg tatttttgaa gcaggtctac gttttattcc
     8521 ggatagcaat gcggaatcag gcgtgcgtca agaatttgtt tttggtgcgg cgattgtagg
     8581 cgataaacgt ccggtacatt gggaaaacaa atcagaagca gccgatttct ttgatttaaa
     8641 aggcgatatt gagcgtattc tttctttaac ctctatccgc cacgatctgc aatttgtcgc
     8701 aaaacagttc ccagcattac acccggggca atcggctgcg attatgcttg atggcaaaga
     8761 aattggtttt atcggaactg ttcacccgtc aattgtgcaa aagtttggca ttaaaggcaa
     8821 accgattgta tgtgaaattc tagcatcagc tattgcagag cgtccggtta cacaagcggg
     8881 cgaaatttct aaatttcctg caaataaccg tgatattgcg gtagtggttg atgaatctgt
     8941 tcctgcaggt gaggtgttag aggcttgtcg taaagctggt ggtaataaat tagtggcagt
     9001 aaatttattt gacgtttacc gtggttcgaa tttagaaagt ggtaagaaga gtttagccat
     9061 tagcttaacg gttcaagata atgaaaaaac attagaagaa aatgaaatca atgcggtaat
     9121 tcaagcggta ttagctgaat tagcaacacg tttcaatgcg gtacttcgtg attaatcagt
     9181 aaaatatggc tgatttattt tatcagccat aacaataaac taaggataaa tgatggcgct
     9241 taccaagatt gaaattgcag aaaacctgat tgaaaaattt gggttagaaa agcgtgtagc
     9301 gaagcaattt gttgaattgt tctttgaaga gatccgatcc tccctcgaaa atggtgaaga
     9361 agtgaaatta tctggttttg gtaatttttc actgagagaa aaaaaagctc gtccaggaag
     9421 aaatcctaaa acgggggaaa atgtggctgt ttcagcccgt cgagtagtag tttttaaagc
     9481 tgggcaaaaa ttacgagaac gtgttgagca agctagctcc caatcatagg ggcagttata
     9541 ttagttagat ttaatgtgga gtaataaatg aaattaacca aacggtggct ttccttaggt
     9601 tgtttgttag ctattacagc gatgttagtg gcttgttcaa gttcagatac aacctctaag
     9661 tctcaagtaa aaagtaaagt ttatcgttca atataccaat cagacctttc tgatcctatt
     9721 atggcaatta gtcgattaag tgaacatcaa cacgaatgga aaggcactcg ctatcgttta
     9781 ggtggcaata gcaaggctgg catcgactgt tctggtttta tgcaagtcac ttttaaagat
     9841 ctttttggga tagatttgcc gagaaccacc acagagcagg ctaaggctgg tgagcgtata
     9901 tccaaagacg aattgcgtac aggtgattta gtttttttca agacagggcg tggtccaaat
     9961 gggaaacacg ttggtgttta tgtaaaaaat gggcaatttc ttcacgcctc aacaaaggga
    10021 ggggtgattt attctgattt ggattcgcca tattggtcta aggctttctg gcaggctcgt
    10081 cgtttataat ttagggtaac atacatgctg aaaaaaatcg gacaagcggt catatttgga
    10141 cttttttgtg caattttaat tttgtttgta gctccaatta ttcagagtaa agggagttcg
    10201 ttttcattat cagcattcac tcaaaaagag attgtaagct acaatgcagc ggttaaaata
    10261 gcctcccccg cagtcgttaa cgtatatagc cgaaatttta gttctgaaaa tgaaacattt
    10321 gaagttaaga atttaggttc gggtgtgatt atgagtagcg atggctatat tttaactaac
    10381 aggcatgtga ttgaagatgc ggatcaaatc gtgattgctt tgcaaaacgg tgctatttcg
    10441 actaatgtaa aattagtcgg cgatgattct ttaactgatt tagctgtttt aaaaattgag
    10501 ggtgagaatt tacctactat tccacaaaat ccggagcgca aactacaaat tggcgatgtg
    10561 gtgttggcaa ttggtaatcc tttgaattta ggacagagca ttacgcaagg gatagtcagt
    10621 gctattgggc gaaaaacctt aacagaaagt ggtagacaaa attttattca gacagatgtt
    10681 tccattaatc aagggaactc aggtggtgct ttaattaata ctgctggtga gctaataggt
    10741 attaacactt tgcgttttgg gaaaaatacg aatgaattgt cagagggcct aaattttgcg
    10801 attcccatta atctggcgaa tcaaattatg agtaagatca ttaaagatgg ccgagttatt
    10861 cgtggctatt ttggggtaag tacagatttg cttgacaccg caaaaatgca aggttatgaa
    10921 aaaggggtga tcattgttaa tgtagataaa aatgggccag ccgcaaaagc ggggattcaa
    10981 gcaggtgact tagtgcttaa agtcggagat attgaggcat tctctccttc tcaaatgatg
    11041 gaagagcttg ctgaaatgaa accttatact acagtaaaag tattggttca acgtgatgaa
    11101 caattactta actttgatgt aactattact gagttacaga ctcaataggg tagaaaatga
    11161 aaaaaatagt gattacagtt gatgggccga gtggtgcagg taaaggaacg ttatgtcatg
    11221 cattggctga aaaattaggg tttgattttt tagattctgg agccttatac cggattactg
    11281 cattaagcgc aattaaaaaa gaggttcccc ttgatgatga ggaaaaacta gcggaagttg
    11341 ggcgtaatct tgatattcaa tttttgccag aaaatggcga gattcaggtg attttggaag
    11401 gagaaaatgt aggcgactta atccgaacgg cagaagcagg tcaaaatgcc tctaaagtcg
    11461 ctgctttccc tttggtacgt gaagcacttt tagaacgcca aagagccttt agtagcgaaa
    11521 aaggtctgat tgcagatgga cgagatatgg ggacagttgt gtttcctgat gcacaaatta
    11581 agctgttttt agatgcaagt gccgaagaac gcacaaaaag acgtgtaaaa cagttgcaag
    11641 aaaagggatt taatgctaac tttgacgaga ttttagccga gataaaagaa cgtgattttc
    11701 gcgatagaaa tcgatcagtc gcgccacttg ttccggctaa agatgcgttg ctgttagatt
    11761 caacgcattt atcaattgaa gatgtgatta accaagcatt aaatcatatc gctcaataca
    11821 ttaaatttta gtttgttgct tcacatagga tttgtgtagc ttttattatc aaccccgttt
    11881 aacaggacgt tagatggatg tttattttta agaagattta ttatgtcaga attatcgttt
    11941 gctcaactac ttgaagaatc atttgcagct acaccacgtt taggtgatgt tgttaaaggt
    12001 actgttgttg ctatccaaaa aggcttagtt attgttgata caggtttcaa atctgaatct
    12061 gcaatcgatg cctcagaatt tactaacgca caaggtgaat tagaagttca agtgggtgat
    12121 gaagtagatg ttgttcttaa agctgtagaa gacggttttg gtgcaacagt agtttctcgt
    12181 ggtgatgcaa aacgtaacga agcttggatt gctttagaga aagcatttga agaacaagct
    12241 acagttatcg gtttcgtaaa tggtaaagta aaaggcggtt tcactgttga attaaacggt
    12301 gttcgtgcat tcttacctgg ttcattagtt gatactcgtc cggttcgtga ttctttaaac
    12361 ctagaaggta aagagtacga attcaaagta atcaaattag atcaaaaacg taacaacgta
    12421 gtagtatctc gtcgtgctgt tatcgaaaca gaaagcaacc aagatcgtga tgcggtatta
    12481 gcaaacttag ttgaaggttc tgaagttaaa ggtacagtta aaaacttaac tgactacggt
    12541 gcattcgtag atttaggtgg cgttgacggt ttattacata tcacagatat ggcttggaaa
    12601 cgtgttaaac acccaagtga agtggttaat gtaggcgatg aagttactgt taaagtatta
    12661 aaatttgaca aagacaaaac tcgtgtatca ttaggcttaa aacaattagg tcaagatcct
    12721 tgggctgtaa ttgctgaaaa ccacccggta aacagcaaat taactggtaa agtaactaac
    12781 ttaactgact acggttgctt cgttgagatt ttagacggtg ttgaaggttt agttcacgtt
    12841 tcagaaatgg attggacaaa caaaaacatt cacccatcta aagtggttaa cgtaggcgat
    12901 gtagttgaag taatggtact tgaagttgat gaagaacgtc gtcgtatctc attaggttta
    12961 aaacaatgca aagcaaaccc ttgggaacaa tttgcggcaa ctcacagcaa aaatgataaa
    13021 gtatcaggta aaatcaaatc aattactgac ttcggtattt tcatcggttt agaaggtggt
    13081 attgacggtt tagttcactt atctgacatt tcttggaatg tttcaggtga agaagcagtt
    13141 cgtaactaca aaaaaggtga tgaagtagaa gctgttgttc tacaagttga tgcagtgaaa
    13201 gagcgtatct ctttaggtat caaacaatta gaatctgatc ctttcacaaa ctttgtagat
    13261 ggtactaaaa aaggtgcaat cttaacaggt aaagttgtag aagttgatgc taaaggcgtt
    13321 aaagttgaat tggaaggtgg cgttgaagca tttattcgtg caaacgaagc aactgctgag
    13381 cgtgtagaag acatcacttc tgttatttct gttggcgatt caatcgaagc gaaatacacc
    13441 ggtgttgatc gtaaatctcg cgtagttaac ttatctgttc gtgcaaaaaa cgaagctgaa
    13501 gaatcagcag caattgcaca agtgaacaaa gaggaagttg ttgtacctaa tgcatttgct
    13561 gaagctttca aagcagctaa aggcgaataa ttagtataga ctaatctaaa atgggtatgt
    13621 tttgaacata cccatttaaa cttagaaatg cc
//
LOCUS       DANLRW010000071        13407 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.071, whole genome shotgun sequence.
ACCESSION   DANLRW010000071 DANLRW010000000
VERSION     DANLRW010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13407
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.071"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..319)
                     /locus_tag="PXA71_001713"
     CDS             complement(<1..319)
                     /locus_tag="PXA71_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014668079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N-acetylneuraminate-beta-galactosamide-
                     alpha-2, 3-sialyltransferase"
                     /protein_id="HDL5105810.1"
                     /translation="MNLIICCTPLQVLIAEKIIEMHPNERFYGVMLSTVKNAKFDFYQ
                     ARLAQKCEQFFAMQQHSERIQLLKEIIYLKRTFGGKKFNKVFLANINELEIQFLLSAI
                     SFQE"
     gene            complement(316..1521)
                     /locus_tag="PXA71_001714"
     CDS             complement(316..1521)
                     /locus_tag="PXA71_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005694190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase"
                     /protein_id="HDL5105811.1"
                     /translation="MKAVKDSVIYLIGELASKSIPFLLLPYFSRKLGVAGYGELSYYQ
                     TFAALFVIFIGLSQDGAVARYFYFYGKRSLNLVLSTGYLYTLCATLLILLGCWYFQSE
                     IIAYVAIGAMFQSFLNVQLSVRQCQKQALAYTTIQLMSAIFSAVITVAMMEYFKTDLV
                     EKRILAILMSNGLVFLIAYFLYAKRAKTKKFSLARHKTALLYLFGFGIPLILHHSSIF
                     LKGQLDRVFIYHKFSEEDLGLYAMGAQIAMILAIVVQALNKATLPYFYEALKQKKINV
                     SHIHKWALYALFIVPLPAIVMWFIPEELVVWILGSQFVGTKYYIILFLIATMLVVPYL
                     ILVNYLFFYGKNKLISLCSILSTIFYLVALFALTFSKIEYIPFASIIGAISIIPILYI
                     MTAKVGKTV"
     gene            complement(1531..2715)
                     /gene="neuC"
                     /locus_tag="PXA71_001715"
     CDS             complement(1531..2715)
                     /gene="neuC"
                     /locus_tag="PXA71_001715"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HDL5105812.1"
                     /translation="MKNIAYITGSRAEYGIVKRLLQKLAQDPTVNFSLVVTAMHLDPQ
                     YGNTVTVIEQDGFEIAARIPLTLNSENNQTIIHSMAECLDRFGEHFQQHRYDAVIVLG
                     DRYEMLAVATAAAMHNIPLIHLHGGEQTLGNYDEFIRHCITKMSKLHLTSTEEYRQRV
                     IQMGELPENVVNTGSLGAENSLDLVLPTQAELVERLGIPASPYFLVVFHPETLTDVSV
                     LEQIEALLNAFEQFKDKYQFVFIGSNSDTNSEQIYARFKAYTDENQFKFFTSVKPEEY
                     LALIKYSNGLIGNSSSGLIEAPSCGVGTLNIGNRQQGRVRDESVIDVESNEQAIIDGI
                     EKLISADFQHRLPSMKNPYFQDNAMEKAYNAIKIFLADSHHTQPKGFYDVAFSQAVKK
                     SE"
     gene            complement(2716..3975)
                     /locus_tag="PXA71_001716"
     CDS             complement(2716..3975)
                     /locus_tag="PXA71_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase"
                     /protein_id="HDL5105813.1"
                     /translation="MKKIAIITARAGSKGLPNKNVLLANGKPLMAYSIEAAIESGQFE
                     KIIVSTDSQEYIDLFSHYPIEFIKRAEHLASDKASSFVVIEDVLNQYRSVEFDYFMLL
                     QPTSPLRSGEHIKESCEKFEKNFEQFDFLVSVSDAHKPTTLTRMIEEDECLKHFQLDY
                     SNYARQLHHPEYSPNGAIFTAKPEAYLKQKHFYGAKCLAYFMDKDVSIDIDDRQDFEY
                     FYFILQQRNKEKILLETIKRSILMKKENFKEVKEIALIGHSIIEYWDIEHLNGKAVNN
                     LGIAGISTKQYSDLILDEGLISALPKDIILMFGTNDIVYAGWSDEKILADINHLIAQL
                     TAIRGDINLYFLEITPTAFRVDRNNNDIRLLNQYLKDNLAVKWISLDQAFSDKYGKLD
                     LSYSDDGLHLNAKGYEKLTAILEKELN"
     gene            complement(4035..5072)
                     /gene="neuB"
                     /locus_tag="PXA71_001717"
     CDS             complement(4035..5072)
                     /gene="neuB"
                     /locus_tag="PXA71_001717"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HDL5105814.1"
                     /translation="MVNVFIVAEIGCNHNGDPALAKKMVDVAKECGVDAVKFQTFKAD
                     KLISKYAPKAEYQKVTTGTADSQLEMTRKLELPYEEFVKLEAYARSLGLEVFSTPFDF
                     ESIDFLASQQQKVWKIPSGELTNLPYLEKIARLPIEGKTIVISTGMATIEETKASLKV
                     LEDNGVAKKDITILHCNTEYPTPYEDVNLNAFHQLKQEFGDYSLGFSDHSAGYFAGLA
                     AVPYGITFIEKHFTLDKNFEGPDHKASVTPEELKLLCEGIRAVEKSLGSSEKLVTNSE
                     AKNKIVARKSIIAARPIKKGEIFTTENITTKRPGNGISPMFWYDVLGKEAQQDFEEDQ
                     LIQDSRFENQM"
     gene            complement(5072..5716)
                     /locus_tag="PXA71_001718"
     CDS             complement(5072..5716)
                     /locus_tag="PXA71_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDL5105815.1"
                     /translation="MQQKSKREKLILIGAGGYAKSVLDSLDHEQYEFCGLIDNFKPEG
                     SVHLGYPILASTIDCFSKRDNYHYFICIGNNSYRLEKFSKLQKYKCRIINVVDKTALV
                     SKNSTLGIGVFVGKMAIVNSGVTVGDNVIINTKSLVEHGCFIGSHCNISTNTTLNGDV
                     IVEDHAFIGSSSVVNGQLRVGESALVGSGAVVIRNVEPRTVVAGVPAKYIKDIK"
     gene            5849..6592
                     /locus_tag="PXA71_001719"
     CDS             5849..6592
                     /locus_tag="PXA71_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005615381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5105816.1"
                     /translation="MFEFIKLITAMILPPFNIILLWLLALILFSLGYKYAAYFFALLG
                     ILILYIFSIPYTSQKLGDSLVEAEPFTIEKYKNAQAIVVLGGGLRDSQELFGKLAITG
                     IPLERMRYAAYLHKETGLPILATGSSPNGTSEAKVMADEFKMFFNIETKWLENKAKTT
                     KENAIFSREILEKENIHKIILVTNQWHMKRAEMLFSQQGFEVMSASVGSGDTPDHYKL
                     NFMHFIPQAGAMNSNMLALKEWIGYWKEK"
     gene            complement(6669..8867)
                     /gene="priA"
                     /locus_tag="PXA71_001720"
     CDS             complement(6669..8867)
                     /gene="priA"
                     /locus_tag="PXA71_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDL5105817.1"
                     /translation="MALNVPLHRYFDYLLPPAFNACQGGRVVVPFGRQTKIGIVVDFP
                     QTSDVPTEKLKPIKAALDSSPIFDSEMWQLLNWAARYYHAPIGEVLTGALPIKLRNGD
                     STERVQPNYFVVTEQGRKSLIIGENKKAKKQVERLTELAECAKYFEKPTACSPSAWKG
                     LLEKGYIEKIDVPFMAQAWQDSLGEFPLVNTNNRLILNKQQTLVVSRLNAQTTFASFL
                     LNGVTGSGKTEVYLQLIETVLKREEQVLLLVPEIGLTPQTVQRFKARFNVEIDVLHSN
                     MNETERLNAWLRAKNGESAIVIGTRSALFTQFQKLGVIILDEEHDSSFKQQDGWRYHA
                     RDLAVVRAKNANIPIVLGSATPSLESLHNVQNGKFIELTLTARAGNAQLANQQIIDLK
                     TQRVTAGLSERLLSMMKTQLEQGNQVMLFLNRRGFAPVLLCHECGWVCECEACNKPFT
                     YHQKQKVLRCHHCATQRVIPRQCGHCGSTHLITTGVGTEQLEQVLNQQFPHYQVTRID
                     RDSTARKGALENHLTAIREGKSQILIGTQMLAKGHHFPNVTLVAIVNVDSALFSTDFR
                     AEEKLAQLYIQVAGRAGRAEKKGEVVLQTHYPDHPLLKTLLEQGYRAFADEALKMRQL
                     MSLPPFSSQVLFKATGKDNQQTLQLLEQLADYFSQKIQQQNGQGFQLPPPFSAPMAKK
                     AGHYRWLLLIQHPLRGALQQLLDAFDQERESLNIPNNIRLNIDIDPQEIS"
     gene            complement(8879..9491)
                     /locus_tag="PXA71_001721"
                     /pseudo
     CDS             complement(8879..9491)
                     /locus_tag="PXA71_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005818858.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
     gene            complement(9484..10383)
                     /gene="rarD"
                     /locus_tag="PXA71_001722"
     CDS             complement(9484..10383)
                     /gene="rarD"
                     /locus_tag="PXA71_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDL5105818.1"
                     /translation="MLKGILLSLSASVLFGCMYYLAIFLKPLAGVSIFGIRMLVTIPF
                     LFLALYLFKKQNEFWVFLQRLKQEPYLLLVILITASIVGGQMWLFLWAPNSGKAIEVS
                     MGYLLMPIIMVAFGKVVYKETLSLNKWLAIVVAFIGVASNILFTGKISIASLFVCTGY
                     PIYFYLRRKFGLSHLHSFVVEILYLLPVACYFISQTDMQYVETQNLNIYYFIALLGLI
                     SGTALISYTLASTILPFNLLGLLGYVEPLLMLVVSFLIGERLANESYLLMICLLISIS
                     FLVLDGMFALRQQRKRKLSVNNE"
     gene            complement(10610..11827)
                     /locus_tag="PXA71_001723"
     CDS             complement(10610..11827)
                     /locus_tag="PXA71_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HDL5105819.1"
                     /translation="MDRFPKSDKLAQVRYDIRGPIHKEALRLEEEGHKILKLNIGNPA
                     PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIVQYYQSKGMRGMDVNDVYIGN
                     GVSELITMSMQALLNDGDEILIPMPDYPLWTAASTLAGGKAVHYLCDEENEWFPDLED
                     IKSKITPRTKGILVINPNNPTGAVYSRQILLEIAELARQHNLIIFADEIYEKIVYDGA
                     VHHHIAALAPDVLTVTYNGLSKAYRVAGFRQGWMVLSGPKHQAKGFIEGLDMLSSMRL
                     CANTPMQHAIQTALGGYQSINEFVLPGGRLLEQRNKMHELLVQIPGISCVKAKGALYM
                     FPKIDTEMYGIKDDQKFIYDLLRQEKVLLVQGSGFNWKKPDHFRVVTLPYAHQIEEAI
                     GRLANFLKTYRQD"
     gene            12015..13319
                     /locus_tag="PXA71_001724"
     CDS             12015..13319
                     /locus_tag="PXA71_001724"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase"
                     /protein_id="HDL5105820.1"
                     /translation="MLIFHQLKQELTKSYSKVGREQGLVAIQASMPLLEANIPLLGWL
                     KTQKTSYPHFFLQYRDTDQTIATIGTLRQFYTLEAAQSFIQQHHFPLIGGLQFEGNTQ
                     FILPQFSLVKNQQNLTACFYFDSDNFEQQAVIFEQFLANFSQITELGLTDNPLVSMSA
                     TSHFEQWKANIEKAIVSIEQGDFQKVVLANAMRLHFEQPICAYSLLAQSQKTNLGCYH
                     FLWAESADVAFLGSTPERLYQRQGLHFSTEALAGTAAVTTSEVQTELNAQWLLSDPKN
                     IYENQLVVDDIENQLKDCVTEFAVSEAKIKRLHNVQHLRRQIQATLKPDTSDSDCLSK
                     IHPTAAVAGLPRQKAKGFITENEPFTRHWYAGTLGVMGNEEAEFCVTLRSALISQNSI
                     TLYAGAGIVSGSDPQSEWQEIKRKAQGMAKLLDVDLVTKGEL"
BASE COUNT         4142 a         2860 c         2440 g         3965 t
ORIGIN      
        1 gttcttgaaa tgaaatggca cttaacagaa attgaatttc taactcattg atatttgcta
       61 aaaagacttt attaaacttc ttaccgccaa aagtacgttt taaataaata atttctttta
      121 ataattgaat acgctcgcta tgttgttgca tcgcaaaaaa ttgttcgcac ttttgggcta
      181 atctagcttg gtaaaaatca aatttcgcgt tttttaccgt agaaagcatc accccataga
      241 atcgctcatt agggtgcatt tcaatgattt tttcagcaat caacacttgc aagggcgtgc
      301 aacaaataat taaattcata cggtttttcc tacttttgcc gtcattatat aaagaatcgg
      361 aataatgctg attgcaccaa tgatgctggc aaaaggaata tattcaattt tagaaaaagt
      421 taaagcaaat agtgcaacta aataaaaaat agtagataaa atcgagcaaa gcgaaattag
      481 cttatttttg ccataaaaaa acaaataatt gactaaaatg aggtaaggca caaccaacat
      541 tgtcgcaatt aaaaagagaa taatgtagta ttttgttcct acaaattggc tacccagaat
      601 ccataccact aattcttccg gaataaacca catcacaata gcaggtaatg gtacaataaa
      661 taaggcatac aacgcccatt tgtggatatg gctgacatta atttttttct gctttaaggc
      721 ttcataaaaa taaggcagtg ttgctttatt taaggcttga accacaatgg ctagaatcat
      781 cgcaatttga gcccccattg catataaacc taaatcctct tcgctaaatt tatggtaaat
      841 aaatactctg tctaactgtc cttttaagaa aatactggaa tggtgcaaaa tcaacggaat
      901 accaaagccg aataaataca ataaagcagt tttatggcgg gcaaggctaa atttcttcgt
      961 ttttgctctt ttagcataca aaaagtaagc gattagaaag actaagccat tactcatcaa
     1021 aatcgctaaa atccgctttt ccactaaatc ggtcttaaaa tactccatca ttgcaacggt
     1081 aataactgcc gaaaaaatcg ccgacattaa ttgaatcgtt gtataagcaa gtgcctgttt
     1141 ttgacactgc cttacactaa gctgtacatt caaaaacgac tggaacatcg ccccaatcgc
     1201 tacataagca ataatttcag actggaaata ccagcaaccc aacaggataa gcaaagttgc
     1261 acaaagagta tataaatacc ctgtactcaa gactaaattt agtgaacgct taccataaaa
     1321 atagaaatag cgagcaaccg caccgtcttg gctaagcccg ataaaaatta caaataaagc
     1381 agcaaaggtt tggtagtagg aaagctcccc ataacctgcc acgccgagtt tgcgtgaaaa
     1441 gtagggtaag agcaagaaag gaattgactt tgacgccaat tccccaatta aataaatcac
     1501 actgtcttta actgctttca tagttgcaaa ttattctgat tttttgaccg cttgcgagaa
     1561 agcaacatca taaaatcctt tcggttgagt atggtggctg tctgctaaga atattttgat
     1621 tgcattgtaa gccttttcca tcgcgttgtc ttgaaaatat ggatttttca tactcggtaa
     1681 acggtgttgg aaatcggctg aaatcaattt ttcgatacca tctatgatag cctgttcatt
     1741 actctctaca tcaattacgc tctcatcccg tactcgccct tgctggcgat taccgatatt
     1801 tagcgtacca acaccacaac tcggtgcttc aatcaagcct gatgagctat taccaatcaa
     1861 cccatttgaa tatttaatca acgctaaata ctcttccggt ttgactgagg tgaaaaactt
     1921 aaattgattt tcatcggtgt aagccttaaa acgtgcataa atttgctctg aattggtgtc
     1981 tgaatttgag ccgataaaga cgaattggta tttgtcttta aactgctcaa aagcattgag
     2041 taacgcctca atttgctcca acacggaaac atcggttaag gtttccgggt ggaagaccac
     2101 taaaaaataa ggcgatgccg gaatccctaa tctctcgact aattctgctt gggtcggcaa
     2161 cactaaatcc aaactattct ccgcccctag agaaccagta ttcaccacat tttcgggcag
     2221 ctcgcccatt tgaatcacac gctgtctata ttcttcagtt gaagttaaat gcaatttcga
     2281 cattttggta atacaatggc gaataaattc atcgtaatta cctaatgttt gctcaccacc
     2341 gtgcagatga atcagcggaa tattatgcat cgccgcagcc gttgccaccg ccaacatctc
     2401 gtaacgatcg cctagcacaa tcaccgcatc ataacgatgt tgctggaaat gttcgccaaa
     2461 tcgatctaaa cactctgcca ttgaatgaat aatggtctga ttattttcac tgtttaaggt
     2521 aagcggaata cgagctgcaa tctcaaagcc atcttgctca atgaccgtca ccgtattgcc
     2581 atattgcgga tccaaatgca tcgcagtaac aaccagagag aaattcacag tcggatcttg
     2641 tgctaatttt tgtaataaac gctttacaat cccgtattcg gcacgagatc cggtaatata
     2701 ggcaatattt ttcatttagt tgagctcttt ttccaaaata gcggttaatt tttcataacc
     2761 ttttgcattt aaatgtaatc cgtcatcgct atagcttaaa tccaatttgc catatttatc
     2821 gctaaatgcc tgatctaagc taatccattt caccgctaaa ttatctttaa gatattgatt
     2881 taacaagcga atatcgttgt tattacgatc gactctaaat gcagttgggg taatttccaa
     2941 gaaatagaga ttaatatctc cacgaattgc tgttaattgt gcaattaaat gattaatatc
     3001 tgctagaatt ttttcatcac tccagccagc atatacaata tcattagtac cgaacattaa
     3061 aataatgtct ttaggtaaag cagaaattaa accttcatcc aaaatcagat cactgtattg
     3121 ttttgttgaa atacctgcaa ttcctaaatt attaactgcc ttaccgttta aatgttcaat
     3181 atcccaatat tcaatgatcg aatgcccgat taaggctatc tctttcactt ctttaaagtt
     3241 ctcttttttc attaaaatcg aacgtttaat ggtttcaagt aagatttttt ctttattgcg
     3301 ttgttgcaga ataaagtaga agtactcgaa atcttggcga tcatcaatat caatagaaac
     3361 gtctttatcc ataaaatagg ctagacattt cgcaccatag aagtgttttt gtttaagata
     3421 ggcttctggc ttagctgtaa aaatagctcc attcggtgaa tattcaggat gatgcaattg
     3481 gcgtgcatag ttagaataat ccaactgaaa atgctttagg cactcgtctt cctcaatcat
     3541 acgagtcaat gtcgtaggtt tatgggcatc agaaacagat actaagaaat caaattgttc
     3601 gaaatttttc tcaaattttt cacacgattc cttaatatgc tctcctgatc tcaacggcga
     3661 agttggttga agtagcataa aatagtcaaa ctctactgat ctatattgat ttaacacatc
     3721 ttcaatcacg acaaaagaac tcgccttatc actggctaaa tgctcggcac gtttaataaa
     3781 ttcaattgga taatgtgaga acaaatcaat gtattcttgg gaatcagtac taacgataat
     3841 tttctcaaat tgccccgact caatcgcagc ttcaatagaa taggccatta acggcttacc
     3901 gttggctaat aatacatttt tattcggcaa gccttttgaa ccggctcggg ctgtaataat
     3961 tgcaattttt ttcataaatt tgaccgcttg ttaaacacaa aatgatggag ctttcatccc
     4021 atcactatat tatattacat ctgattttca aaacgagaat cttgaattaa ttgatcttct
     4081 tcaaaatcct gttgtgcttc tttacctagc acatcatacc aaaacatcgg gctaatgcca
     4141 ttaccggggc gtttagtcgt aatattttcg gttgtaaaaa tttcgccttt tttaattgga
     4201 cgtgccgcaa taattgattt tcttgccaca attttatttt ttgcttccga attagtgact
     4261 aatttctcgg aagaacccag cgatttttcc accgcacgaa tgccttcaca cagtaatttc
     4321 agctcttcag gtgtaaccga agctttatga tccggacctt caaagttttt atctaaggta
     4381 aaatgttttt caatgaaggt aatgccgtaa ggtactgccg ccaaccctgc aaaataaccg
     4441 gcagagtggt cagaaaaacc taaactatag tcgccaaact cctgttttag ctgatggaac
     4501 gcatttaaat tcacatcttc ataaggtgtc gggtactcgg tattacaatg taaaatcgta
     4561 atatcttttt tcgctacacc gttatcttcc aatactttta atgaggcttt tgtttcttca
     4621 atggttgcca taccggtaga aataacgatc gtcttgcctt caatcggaag tcgtgcaatt
     4681 ttttctaaat acggcaaatt ggttaattca ccagacggaa ttttccacac tttttgttgt
     4741 tggcttgcca agaaatcaat cgactcgaaa tcgaatggcg tagagaatac ctctaacccc
     4801 aatgaacgag cgtaagcctc taatttcaca aactcctcat aaggtaactc taatttgcgg
     4861 gtcatttcta attgggaatc agcggtgccg gtcgttactt tttgatactc ggctttaggg
     4921 gcatatttag agatcaactt atccgcttta aaggtttgga atttcaccgc atcgacacca
     4981 cactctttcg ctacatcaac cattttcttt gctaacgcag gatcgccgtt atggttacaa
     5041 ccgatttctg ccacaataaa tacatttacc attattttat atccttaata tattttgctg
     5101 gaacgcctgc tacaactgtg cgaggctcca catttctaat taccactgca ccggagccaa
     5161 ccaatgcact ttcacccact cttagctgtc cgttcacaac agaggaacta ccaataaaag
     5221 catgatcttc gacaattaca tcgccattta gtgtcgtatt ggttgaaata ttgcaatgac
     5281 tgccgataaa acaaccatgc tcaaccagcg atttagtgtt aatgatcaca ttatcgccta
     5341 cagttacgcc actgtttaca attgccattt ttccaacaaa cactccaatg cctagagtgg
     5401 aatttttgga caccaatgcg gttttatcta ccacattaat tattctacac ttatattttt
     5461 gtagcttaga gaatttttct aaacggtaac tattatttcc aatacaaata aaatagtgat
     5521 aattatctcg tttagaaaaa caatcaattg ttgaagctag aataggataa cctaagtgca
     5581 cactaccttc aggcttaaag ttatcgataa gtccacaaaa ttcatattgt tcgtgatcaa
     5641 gtgaatctaa cactgatttg gcatagccac cggcaccgat caaaatcaat ttttctcttt
     5701 tagacttttg ttgcattgct atcacccatg atgaatttca attcatatgg agtattctaa
     5761 tacttttcaa gatagaaaaa tagacaagtc ttatataatt taggaaaatg aacatatctt
     5821 tacttatttt tactacgata ttctttctat gttcgagttc attaaactga tcaccgcaat
     5881 gatcctcccg ccatttaata ttattttgct gtggttgtta gcattaatcc tcttttcttt
     5941 aggctataaa tacgctgctt acttctttgc cttgttaggt attctgattt tatatatctt
     6001 cagcattccc tatacttcac agaaattagg ggattcatta gtcgaagcag agccatttac
     6061 catagagaaa tataaaaatg ctcaagcgat tgtggtgcta ggtggcgggc tacgagacag
     6121 ccaagagtta ttcggcaaac tggcaattac cggtattccg ctggaaagaa tgcgttatgc
     6181 cgcttatctg cataaagaaa ccggcttacc gattttagcg accggaagca gcccaaatgg
     6241 gacttctgag gcaaaggtta tggcagatga atttaaaatg ttcttcaata ttgagaccaa
     6301 atggctggaa aataaggcga aaaccaccaa agaaaatgcg attttcagcc gtgagatttt
     6361 agaaaaagag aatattcata aaatcattct tgttaccaac caatggcata tgaaacgggc
     6421 tgaaatgctg tttagccaac aaggatttga ggtgatgtct gccagcgtcg gttctggcga
     6481 tacgcccgat cattacaaac tcaactttat gcactttatt ccgcaagccg gtgcaatgaa
     6541 tagcaatatg ctggcattaa aagagtggat tggttattgg aaagagaaat aaccgaagat
     6601 aaatagcagc aaggcaggtt ttcacctgcc ttctttttgc aaaaaatcag tcaaaaacaa
     6661 ccgcttgtct aactaatctc ttgtgggtca atgtcgatat tcagcctgat attattcgga
     6721 atgtttaaac tttccctttc ttgatcaaag gcatcgagta gctgttgtaa tgctcctcgg
     6781 agagggtgtt gaatcagcaa taaccagcgg taatgtcctg ctttcttcgc cattggggct
     6841 gaaaatggtg gagggagctg gaagccttgc ccgttttgtt gctggatttt ttggctaaaa
     6901 taatctgcta attgctcaag cagctgtaag gtttgttgat tatctttgcc ggtcgctttg
     6961 aacaaaactt gcgaggaaaa tggtggcaaa ctcattaatt gcctcatttt taacgcctca
     7021 tcagcaaaag ctcggtagcc ttgttccagc aaggttttaa gcagtgggtg atcagggtaa
     7081 tgggtttgta gcaccacttc gccttttttc tccgctcgcc ctgctctgcc tgccacctgt
     7141 atgtaaagct gtgctaattt ttcttccgca cgaaaatcag ttgaaaataa cgctgaatcc
     7201 acattaacaa tcgccaccaa cgtcacattc gggaaatgat gcccttttgc caacatttgc
     7261 gtaccaatca aaatttggct tttgccctct cgaatagcgg tcaaatggtt ttccaatgca
     7321 cctttgcgag cggtagaatc tctgtctata cgagtcactt ggtaatgagg gaattgctga
     7381 tttagcacct gctcaagttg ttctgtgccg acaccggtag ttattaaatg ggttgaacca
     7441 caatgtccgc attggcgggg aattaccctt tgggtggcac aatgatggca acgcaacact
     7501 ttttgctttt ggtggtaagt aaaaggctta ttacacgcct cgcactcaca aacccaaccg
     7561 cattcgtgac aaagtaatac cggggcaaag ccacggcgat ttaaaaacag catcacttga
     7621 ttgccttgct ctaactgggt tttcatcatt gaaagcaagc gctccgacaa accggcagtt
     7681 acccgttgcg tttttaaatc aataatctgc tgattggcaa gttgtgcatt gccggcccga
     7741 gcggttagtg tcagttcgat aaatttcccg ttttgcacat tgtgcaaact ttcaagactt
     7801 ggcgttgccg agcccagcac aatcggaata tttgcatttt tcgccctaac caccgccaaa
     7861 tcccgtgcgt ggtaacgcca accgtcttgt tgcttaaacg agctatcgtg ttcttcatcc
     7921 aagataatca cgcccaattt ttgaaactgg gtaaataaag cagagcgagt gccgattaca
     7981 atcgcacttt ctccattttt cgcccgcaac cacgcattta accgctcagt ttcgttcata
     8041 ttcgagtgca atacgtcaat ttcaacgtta aagcgagctt taaagcgttg taccgtttgc
     8101 ggtgttagcc cgatttcagg cacaagcagc agcacttgtt cctctcgctt aagcaccgtt
     8161 tcaattaact gcaaatacac ttcggttttg cccgagcctg ttacgccatt gagtaaaaag
     8221 ctcgcaaaag tggtttgtgc atttaaacgg ctgaccacta aggtttgttg tttatttaag
     8281 atcagccgat tgttagtatt tactaacgga aattcaccta gtgagtcttg ccacgcttgt
     8341 gccataaacg gcacatcaat tttctcgata tacccttttt cgagtaagcc tttccaagca
     8401 gatgggctac aagcggtcgg tttttcaaaa tattttgcac attcggcaag ctcggttaac
     8461 cgttccacct gctttttggc ttttttattt tcaccgataa tcagagattt ccgcccttgc
     8521 tccgtcacca caaaataatt cggttgaact cgctcagtgg aatcgccatt gcgtaatttt
     8581 atcggtaagg ctccggttag cacttcacca atcggggcgt ggtaataacg agccgcccag
     8641 ttcagcagtt gccacatttc tgagtcaaaa atcgggctag aatccaacgc tgctttaatc
     8701 ggtttgagtt tttcggttgg cacatcacta gtttgcggga aatcgaccac aatgccgatt
     8761 ttggtctggc gaccaaaagg cacaaccacc cgcccgcctt ggcaggcatt gaatgccggc
     8821 ggtagcaaat aatcaaaata acgatgtaac ggcacattca gtgccactct gattaatctc
     8881 acttctctaa accaattttg attgcaagcc cgataaatat cgagccgcag attttattta
     8941 accaatttcc aaaggtttga ttatgccgta aaaaacgccc aacaggtgca gcggctaaga
     9001 ctaaaatact tacccaaata atgctggtgg ataaaaacgt tagccccaac agcataaaag
     9061 gtattttcca aattactgga tacaaactgc ggcaataacg ccaagaaaaa gagcaatact
     9121 ttcgggttta atagattggt aatcaaccct tgacggaata tcttccatag aggaagtttg
     9181 tctagattga ttttctctaa caccaacggc tctcgccaca ttttaatgcc gagatagcag
     9241 agataaattg cccctgcgta tttcagaaaa ttaaataaag tgggcgaatg tgccacaatg
     9301 cctgcaagcc cgagtgaaac cgcaagaata tggcataaaa tgcctgctag aatgccgaat
     9361 gaagacatta agcccgactt tttcccctca gcaatagtgc gagttaaaat atagatagta
     9421 tccgaacccg gtgtaagatt tagcagaata caagcggtca aaaatcccca ataatttaca
     9481 atatcactca ttattcacac tcaatttacg tttacgctgc tgacgaagag caaacatacc
     9541 atctaatact aaaaatgaaa tggagatcaa caagcaaatc atcaacaagt aagattcatt
     9601 tgctaacctt tcgccaatta agaaagacac caccaacatc aatagtggct caacatagcc
     9661 taataaacca agcaaattaa agggtaaaat cgtgctggct agcgtatagc tgataagtgc
     9721 agtgccacta attaaaccca gtaatgcaat aaaatagtaa atattgaggt tttgtgtttc
     9781 gacatattgc atatcggttt gagagataaa ataacaagct acagggagca aatataaaat
     9841 ttctaccaca aagctatgta aatggcttaa gccaaacttt cggcgaaggt aaaaatagat
     9901 tgggtaacct gtgcaaacaa ataaacttgc tatcgaaatt tttcccgtaa acaaaatatt
     9961 actcgctaca ccaatgaaag caaccacaat cgccaaccat ttattcaagg aaagcgtttc
    10021 tttataaacc actttgccaa atgccaccat aataatcggc attaatagat agcccattga
    10081 aacctcaatc gcttttccgc tattgggagc ccataaaaac agccacatct gcccgcccac
    10141 aatagatgcc gtgattaaaa taaccagcaa taaataaggc tcttgcttta ggcgttgaag
    10201 aaatacccaa aactcatttt gttttttaaa taagtataaa gcaaggaaaa gaaaaggaat
    10261 cgtaaccagc atacgaatgc cgaaaatgct cacacctgcc agcggtttta gaaagatcgc
    10321 caaatagtac atacagccga ataacactga ggctgaaaga gataaaagaa tgccttttaa
    10381 catagtgata agaaagtaat tattttttaa tttttcaaat ctcccctacc cctcttttct
    10441 aaagaggatt gtcgagttct aaataaatga ataatgttcg gaggtagggg cgggtccagt
    10501 gcccgcccgc aaattaatat cgttagcgga caggcacagg acctgtccct actgatatta
    10561 tagaacttac aaccctgctt ttataaagtg gggtaaaggg agattcgact tagtcttgac
    10621 gataggtttt caagaaattc gcaaggcgac caatcgcttc ttcaatttga tgtgcataag
    10681 gcaaagttac cacacggaag tgatccggtt ttttccagtt aaaaccggaa ccttgcacta
    10741 atagcacttt ttcttgtcgc aacaaatcgt agatgaattt ttggtcatct ttaatgccgt
    10801 acatttcggt atcaattttc gggaacatat ataacgcccc tttcgctttt acacagctaa
    10861 tacccggaat ttgtaccaat aattcgtgca ttttatttcg ttgttccagc aaacgaccgc
    10921 ccggcaacac aaattcattg atactttgat aaccacctaa tgcggtttga atggcgtgtt
    10981 gcatcggcgt attggcacat aaacgcatag aagagagcat atccaaccct tcaataaaac
    11041 ctttggcttg atgcttcgga ccgctcagca ccatccagcc ctgacggaaa ccggcaacac
    11101 gatacgcctt ggataaaccg ttataagtta cggttaatac gtccggtgca agagcagcaa
    11161 tatggtgatg taccgcacca tcatagacaa ttttttcata aatttcgtca gcaaaaataa
    11221 ttaagttatg ctgacgggca agttctgcaa tttccagcaa aatttgacgg ctatacactg
    11281 ctccggtcgg gttattcggg ttgataacca aaatcccttt agtgcgaggc gtgattttcg
    11341 atttaatatc ttcaagatca gggaaccact cattttcttc atcgcacagg taatgcactg
    11401 ctttaccacc ggctagggtt gaagctgctg tccataacgg ataatcaggc attggaatta
    11461 gaatttcatc gccatcattt aataacgcct gcatcgacat tgtaatcagt tcagatacgc
    11521 cgttgccgat gtaaacatcg tttacatcca taccacgcat accttttgat tgataatatt
    11581 gcacaatcgc tttgcgggca gaatacaaac cttttgaatc acaatagcct tgtgcggttg
    11641 gaagattacg aatcacatcc actaaaattt catcgggtgc ttcaaagcca aaaggggctg
    11701 ggttaccgat atttaatttt aaaattttat gcccttcttc ttctaagcga agtgcctctt
    11761 tatgaattgg cccacggata tcgtaacgaa cctgagctaa cttatctgat ttgggaaaac
    11821 gatccattgt aaacttccta taatgtatta tctaattgta gtctcatccc gctgttcaaa
    11881 aaatcggtaa ttcggaatga atttgtaaac attactctaa tttgggagga aaaaaaagag
    11941 gaaatacgtt aaaatggaga cctttttttc aatcagctaa aaacaagcgg tttctttttc
    12001 tgattttttt gcaaatgctt atttttcatc aattaaaaca agaacttaca aaaagttact
    12061 caaaagtggg aagagagcaa ggattggtcg ccattcaagc ctctatgccg ctattggagg
    12121 caaatattcc gctactcggt tggttgaaaa cacaaaaaac aagctaccct cacttttttc
    12181 tgcaatatcg tgatacagat cagaccattg ccaccattgg cacacttcgc caattttata
    12241 cgctagaagc tgcacaatct tttattcaac aacatcattt cccgttaatc ggcgggcttc
    12301 aatttgaagg caatacgcaa tttattttgc ctcaattttc attggtaaaa aatcagcaaa
    12361 atttaaccgc ttgcttctat tttgatagtg ataactttga acaacaagcg gttatttttg
    12421 aacaatttct tgcaaatttc agccaaatta ccgaattagg actaacggat aatccgctcg
    12481 tttcaatgag tgccaccagc cattttgagc aatggaaagc caatattgaa aaagcgattg
    12541 tttctattga gcagggcgat tttcaaaaag tggtattggc aaatgcgatg agacttcatt
    12601 ttgagcaacc catttgtgct tacagcttgc tggcacaaag ccaaaaaaca aatttaggtt
    12661 gttaccactt tttatgggcg gaaagtgctg atgttgcctt tcttggctca acccctgagc
    12721 ggctatatca acgccaaggg ctacactttt ctaccgaagc cctcgccggc accgctgcgg
    12781 ttaccaccag tgaagtgcaa accgaactca atgcacaatg gctgttaagt gatcccaaaa
    12841 atatctatga aaatcaatta gtggttgatg acattgaaaa ccaactcaaa gattgcgtga
    12901 ccgaatttgc agtatccgag gcaaaaatta agcgtttgca taatgtgcaa cacctacgcc
    12961 gccaaattca agcaacgctc aaaccggaca cctcagattc agattgctta agcaaaatcc
    13021 acccaactgc ggcagttgca gggcttcccc gccaaaaagc aaagggtttt attaccgaaa
    13081 atgagccttt tacccgccat tggtatgcag gtacattagg cgtaatgggc aacgaggaag
    13141 ccgaattttg cgtaacactc cgttctgcat taatttcaca aaattcaatt acgctttatg
    13201 ccggtgccgg cattgtgtca ggctcagatc cacaatcgga atggcaagaa attaaacgta
    13261 aggcacaagg aatggcaaaa ctgttggatg ttgatttagt aacaaaaggg gaactgtaag
    13321 ctaggctttc agaacttaat ctcttaatta tttctttcta tattttcatt tccaacttcc
    13381 caacaaaata tattattgcc accaaat
//
LOCUS       DANLRW010000072        13366 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.072, whole genome shotgun sequence.
ACCESSION   DANLRW010000072 DANLRW010000000
VERSION     DANLRW010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13366
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.072"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            7..792
                     /locus_tag="PXA71_001725"
     CDS             7..792
                     /locus_tag="PXA71_001725"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005716895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HDL5105821.1"
                     /translation="MPLETDHDVSVWAARYIVDRINAFQPTKEKPFVLGLPTGGTPEK
                     TYKELIKLYQAGEVSFKNVVTFNMDEYVGLPKEHPESYHSFMFKHFFDHVDIPLENIN
                     ILNGMAEDVNAECERYEEKIRFYGKIHLFMGGVGVDGHIAFNEPASSLSSRTRIKTLT
                     EDTRIANSRFFNNDVSQVPKFALTVGVGTLLDAEEVMILVTGHNKALALQACVEGAVN
                     HLWTISCLQLHRRGIVVCDEPATQELKVKTVKYFKELEKNVAR"
     gene            873..2015
                     /gene="nagA"
                     /locus_tag="PXA71_001726"
     CDS             873..2015
                     /gene="nagA"
                     /locus_tag="PXA71_001726"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HDL5105822.1"
                     /translation="MNHYALTNCVIYTGEQVLYQHALVVKEDKIDSIVLEENLPLDLQ
                     KIDLKGANLSAGFIDLQLNGCGGVMFNEEITTRTLEIMQETNLRSGTTSYLPTFITSP
                     DEGVKQAVAVMREYLSKHKNQALGLHLEGPYLSVAKKGVHRPEFIREISPEMLDFLCD
                     NGDVITKITIAAENPTADHIKRFNDAGIIVSIGHSNATFAQTKQRIAEGAAFATHLHN
                     AMSPVSNGREGGVVGAVLDSDIYTGIICDGLHVEWGNIRIAKKAKGDKLVIVSDAVAA
                     AGSDIESFIFVGKKVTVKDGKCYDEFGALGGAAITMIESIRNVVQHCDISLNEAIRMS
                     TLYPAKAIGVEETLGSLEAGKIANLAIFDNQFEVKATAVNGQLQWH"
     gene            2097..2411
                     /locus_tag="PXA71_001727"
     CDS             2097..2411
                     /locus_tag="PXA71_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2322 family protein"
                     /protein_id="HDL5105823.1"
                     /translation="MQFKDYLATFPTIDHLAGLNVINSGEVIQHIPAIEGKLGSLKLY
                     NALFAKFDGKLTASAAKQGLEWFAEHVEDAKNNVGKHPNIDLLFRVIEQDLSLSLEPI
                     VK"
     gene            complement(2490..3680)
                     /locus_tag="PXA71_001728"
     CDS             complement(2490..3680)
                     /locus_tag="PXA71_001728"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDL5105824.1"
                     /translation="MTQAIESVLAELKRGVENIYSEEDLITKLKENRPLRIKLGADPT
                     APDIHLGHTVVLNKLRQFQQFGHEVYFLIGDFTGMVGDPSGKNSTRPPLSREDVLRNA
                     ETYKEQIFKILDPQKTKIVFNSEWLGKLGTEGMIRLASNYTVARMLEREDFKNRFTNQ
                     QPIAIHEFIYPLLQGHDSVELKADVELGGTDQTFNLLVGRELQKSAGQKPQVAMTLPL
                     LVGLDGEKKMSKSLGNYIGVTEAPSEMFGKIMSISDDLMWDWYNLLSFRPLDEIAQLK
                     ADVENGKNPRDVKILLAKEIIARFHDEAAADAAEQEFINRFQKGAIPDEVPEFTFEGE
                     IGLAALLKEAGLVPSTSEAIRSAQQGGVKIDGEKVEDVKQTAQKGTFVYQVGKRKFAR
                     ITVK"
     gene            complement(4043..5347)
                     /locus_tag="PXA71_001729"
     CDS             complement(4043..5347)
                     /locus_tag="PXA71_001729"
                     /EC_number="7.2.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium ion-translocating decarboxylase subunit
                     beta"
                     /protein_id="HDL5105825.1"
                     /translation="MESIIALFKGMGLMHLELGQAIMIVISLVLLWLAIARKFEPLLL
                     LPIGFGGLMSNIPEAGMAMTALDNLLHSGSAEQLAIIAAKVNSTSLDLHSIKDAIALA
                     APSVQNELEVMAGDMGYTAGVLALFYKVAIGYGVAPLIIFMGVGAMTDFGPLLANPRM
                     LMLGAAAQFGIFATVLGALGLNWLGIIDFTLPQAAAIGIIGGADGPTAIYLASKLAPE
                     LLGAIAVAAYSYMALVPLIQPPIMKALTTEQERKIRMVQLRNVSNREKIIFPIVLLLL
                     VALLLPDAAPLLGMFCFGNLLRTSGVVERLNDTAQNALINIVTIFLGLSVGAKLVADK
                     FLQPQTLGILVLGVIAFGIGTASGVIMAKIMNRFSQHKINPLIGSAGVSAVPMAARVS
                     NKVGQEYDKQNFLLMHAMGPNVAGVIGSAIAAGVMLKYISTM"
     gene            complement(5357..7183)
                     /gene="oadA"
                     /locus_tag="PXA71_001730"
     CDS             complement(5357..7183)
                     /gene="oadA"
                     /locus_tag="PXA71_001730"
                     /EC_number="7.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-extruding oxaloacetate decarboxylase
                     subunit alpha"
                     /protein_id="HDL5105826.1"
                     /translation="MTTQPKKIAITDVVLRDAHQSLFATRLRLDDMLPIASELDNIGY
                     WSLETWGGATFDSCIRFLGEDPWVRLRELKKAMPKTPMQMLLRGQNLLGYRHYADDVV
                     DKFVERSVANGMSVFRVFDALNDPRNMQAALQAVKKHGGHAQGTLSYTTSPVHTLQTW
                     LDVTEQLLEIGVDSLVIKDMSGILTPMAAYELVSEIKKRYDVELHLHCHSTTGMAEMA
                     LLKAIEAGVDGVDTSISSMSGTYGHPATESIVATLQGTPYETGLSIPALEKISAYFRN
                     VRKKYAKFEGQLRGIDSRILVAQVPGGMLTNLESQLKQQNASDKLDLVLQEIPRVRED
                     LGNIPLVTPTSQIVGTQAVMNVLMGERYKTIAKETAGILKGEYGRTPAPVNKALQDRV
                     LEGAEPITDRPADHLPPELEKLVAEVTASAKEKGITLSENMIDDVLIVALFQQVGWKY
                     LENRNNPSAFEPVPSADEAKPAQASAASAPKAQTQSGSAIYTVELEGKAFVVKVSEGG
                     DITNIAPTPATPAPQAVDSAPKSANTLSANAEPVNAPMAGNILKVEVKEGQQVAEGDV
                     LLILEAMKMETQICAAKSGTIQGINVKQGDVVAVNDTLMSIA"
     gene            complement(7223..7477)
                     /locus_tag="PXA71_001731"
     CDS             complement(7223..7477)
                     /locus_tag="PXA71_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxaloacetate decarboxylase subunit gamma"
                     /protein_id="HDL5105827.1"
                     /translation="MAPAELFAEGINLMVAGMGFVMLFLLVLIYAISFISKIINQYFP
                     EPVSIPASKTVPQSPPDDLERLRPVIAAAIAHHRRINGQH"
     gene            complement(7667..8854)
                     /locus_tag="PXA71_001732"
     CDS             complement(7667..8854)
                     /locus_tag="PXA71_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDL5105828.1"
                     /translation="MSNNNRSALLGAAFLMATSAIGPGFLTQTATFTQTLLASFGFVI
                     LLSILLDIGAQLNIWRIVAVSEKKAQDIANAVLPGAGYFLALLIVMGGLAFNIGNVGG
                     AGLGLNILTGLSPEMGAVVSGAIAVGVFLFHEAGKVMDRFAQIMGFVMIALTIFVAVK
                     ANLPIDDAVVHTFVPEKLDVIAIVTLVGGTVGGYITFAGAHRLLDAGIKGKENLKEVS
                     KSSVSAILIASIMRVVLFLAVLGVVSMGVQLDPKNPAATPFAHVAGDVGLMIFGVVIW
                     AASITSVIGAAYTSVSFITSFSPFIEKHKNCFIVAFIVVSTAVLATIGRPAQVLVFVG
                     TLNGLILPISLGLILLAAHKTKIVGDYKHPVWMTVSGAIVVILMAVLSAMTLSKYISG
                     LMA"
     gene            complement(9129..9866)
                     /gene="pxpA"
                     /locus_tag="PXA71_001733"
     CDS             complement(9129..9866)
                     /gene="pxpA"
                     /locus_tag="PXA71_001733"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HDL5105829.1"
                     /translation="MNHVDLNVDLAEGCGNDHSLLQLVTSANVCCGLHAGDYNEMRKA
                     INWAKENSVRVGAHPSFPDRENFGRTNMQLPDDELKACLLYQLGAAKALCDAENMPMS
                     YVKPHGALYNMAAKDPHLATLIANTVKQFDPNLKLMGLSGSLMLSIAEQHGLETISEV
                     FADRHYLADGSLVPRTRDDAMVESDDEAISQVLQMVLDGTVPTVDGGNVAIKADSICL
                     HGDGEHAVVFAERIKKELQAKGILVKA"
     gene            complement(9853..10782)
                     /locus_tag="PXA71_001734"
     CDS             complement(9853..10782)
                     /locus_tag="PXA71_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDL5105830.1"
                     /translation="MIYIEIIQGFAHIQDLGRYGYRHLGVSHGGAMDSLALQAGNLLL
                     KNANNAPAIELTLGGMRITFDCDTPFCLTGALVEAELDGTPVFSYYRYTANARQTLTI
                     KRIVLGNYAYLCVAGGFLVPQVLGSVSTALKAQFGGFQGRMLKAGDNIATGRRDSRLS
                     LMSIEPIDFTSRIRATASSEYEAFTADSRERFWQQGWQLQNNSNRMGYRFAEKALELT
                     ASLEMLSYAAPSGTVQVPPDGQPIVLMADAQTTGGYPKIACIIQADLGRLAQNPFGST
                     VQFEQVSREQAVEIYQKDQNYLETIRRKANESR"
     gene            complement(10779..11426)
                     /gene="pxpB"
                     /locus_tag="PXA71_001735"
     CDS             complement(10779..11426)
                     /gene="pxpB"
                     /locus_tag="PXA71_001735"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDL5105831.1"
                     /translation="MLTIHHTSEHSLLCLAEPPAELAKQQQIWRVAEQARALDGVLEV
                     VVGMNNFTLFHAIGTDSTRLIQAVQQLWENDQAQAAQSPRLIEIPVHYGGEFGEDLFE
                     VAQFHNTTPEEIIRRHTEPTYTVFMIGFQPGFPYLNGLPQNLHTPRRNVPRTKVPAGS
                     VGIGGRQTGIYPFTSPGGWQLLGRTELPLFDIQHNPPTLLTAGDNVRFVAESITL"
     gene            complement(11520..12344)
                     /locus_tag="PXA71_001736"
     CDS             complement(11520..12344)
                     /locus_tag="PXA71_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HDL5105832.1"
                     /translation="MKKLLLFLLFIGNPIFAKSPELMLVEQYQDQDISGWVMSEKLDG
                     VRGFWDGQQLISRQGYPLNPPDYFIQDFPPFAIDGELFSERGKFEEISSIVRSAQPKG
                     WHKLKLQVFDVPNAQGNLIERLATLENYLKQHPTLHIAIIEQIPIKDKAHLQQFYQSV
                     LEQGGEGVIVRNPNAGYIQGRSAQILKIKPVLDEECTVVAHHKGKGKYTDKLGAITCE
                     NQRGRFRIGSGFKDKERENPPPIGSIITYKYRGVTESGKPRFATFWRIRNDQISEN"
     gene            complement(12478..13302)
                     /locus_tag="PXA71_001737"
     CDS             complement(12478..13302)
                     /locus_tag="PXA71_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105833.1"
                     /translation="MEHFIGLGVAGNFAGHLEQAGEEADFAKVKTVEAVQPKAIFPFY
                     VPAENLGDYQFLSTYPLSNTAINFPSDADNLQIEPEVALICEIGYQDQQVVSLTPTHF
                     AAYNDCSIRRPNANKICEKKNWGASSKGLSAIHLPLDNFNKGGTLDNYNIACFHKRNG
                     ELNTYGIDSPAVEYSYFHQKLLDWIVERMNNQPDEGPMNNISEMLKQANYPTKAIISI
                     GATRYTPFGESNLLQVGDVSMVVVYNVKKYSHSQIEEMAKLETFSEDISALIQTVR"
BASE COUNT         3637 a         2986 c         3010 g         3733 t
ORIGIN      
        1 cgtttaattc cgttagaaac tgatcacgat gtgagtgttt gggctgctcg ttatattgtt
       61 gatcgtatca atgcattcca accaaccaaa gaaaaacctt ttgtgcttgg cttaccaacc
      121 ggcggtacgc ctgaaaaaac ctataaagaa ttaattaaat tatatcaagc tggtgaagtg
      181 agctttaaaa atgtggtgac tttcaatatg gacgaatacg tcggcttacc taaggaacac
      241 cctgaaagct accacagttt tatgttcaag cacttttttg accacgttga tattccgctt
      301 gagaatatca atatcctcaa cggtatggcg gaagacgtga atgcagaatg cgaacgttat
      361 gaagaaaaaa tccgttttta tggtaaaatc catctgttta tgggcggggt cggtgtggat
      421 gggcatattg cgtttaatga gcctgcatct tcgctttctt cccgcactcg aattaaaacg
      481 cttaccgaag atactcgcat tgcaaactca cgtttcttta acaatgacgt aagccaagtg
      541 ccgaaatttg ctttaaccgt tggggttggt acgttgcttg atgccgaaga agtgatgatc
      601 ttagtgaccg gccataacaa agccttagca ttacaggcgt gtgtggaagg ggcggtaaat
      661 catctttgga ccatcagttg cttacaatta catcgccgtg gtatagtggt gtgtgatgag
      721 ccggcaaccc aagagctgaa agttaaaaca gttaagtatt tcaaagagtt agagaaaaac
      781 gtagctcgct aattctgatt ttacaagcgg ttaattttgt aatatttttt acaaaaacga
      841 ccgcctgtta gcatttaaag agaagagaga aaatgaacca ttatgcctta acaaactgtg
      901 tgatttacac cggtgaacaa gtgctttacc aacacgcatt agtggtgaaa gaagataaaa
      961 tcgactccat tgttttggaa gaaaatttac cgctggatct gcaaaaaatc gacctaaaag
     1021 gagcgaatct ttcagccggt tttattgact tgcaactgaa cggctgcggt ggggtgatgt
     1081 ttaatgaaga aatcactacc cgcactttag aaattatgca ggaaaccaat ctgcgttcag
     1141 gcacaaccag ctatttaccg acttttatta cctcgcctga tgagggagtg aaacaagcgg
     1201 tggcggtaat gcgtgagtat ttgtcgaaac acaaaaacca agcactcggc ttgcatttgg
     1261 aaggacctta tctaagtgtg gcaaagaaag gagtacaccg tccggaattt atccgtgaaa
     1321 tcagccctga aatgttagat ttcttatgcg ataacggcga tgtaattacg aaaatcacga
     1381 ttgcagcaga aaacccgacc gcagaccata tcaaacgctt taatgatgca ggaattattg
     1441 tatctatcgg gcattccaat gccacttttg ctcaaaccaa acagcgaatt gccgaagggg
     1501 cagcgtttgc tacgcattta cacaatgcaa tgtcgccggt cagcaacggg cgtgaaggcg
     1561 gtgtagtagg ggcggtgttg gatagcgata tttacaccgg cattatttgc gatggcttgc
     1621 acgttgaatg gggcaacatt cgcattgcca aaaaagccaa aggcgataaa ttagtgattg
     1681 tcagcgatgc tgttgctgcc gcaggaagtg atattgagtc gtttattttt gtcggtaaaa
     1741 aagtcacggt gaaagatggc aaatgctacg atgaattcgg agcattgggc ggtgcggcaa
     1801 tcacgatgat cgaatccatt cgcaacgtag tgcaacattg cgatattagc ctgaatgaag
     1861 caatccgaat gagtaccctt tacccggcaa aagcgattgg ggtagaggaa acactcggct
     1921 cacttgaagc cggcaaaatt gccaaccttg cgattttcga taatcaattt gaagtaaaag
     1981 cgactgctgt aaacgggcaa ttacagtggc attaattttg ctacaaattc taagcataac
     2041 agcatataat ccaaaggcag gcattgtgtc tgccttttat ttatagggag aataacatgc
     2101 aatttaaaga ttacttagcc acttttccaa ctattgatca tctagccggc ttaaacgtga
     2161 taaatagcgg tgaagtgatt caacatattc ctgcgattga aggtaaatta ggttcactaa
     2221 aactttacaa tgcactgttt gcgaaatttg atgggaaatt aaccgctagt gcagcaaaac
     2281 aagggttgga atggtttgcc gaacacgttg aagatgcgaa aaataatgtg ggtaagcacc
     2341 cgaatattga tctattattt agggtaattg agcaagattt atctttaagt ttagagccga
     2401 ttgttaaata agattgcact agtgaaaaat aacaagcggt cattatctgc aaaatttttg
     2461 caaataatga ctgcttgtgt ttaagaggct tatttcacgg taatgcgtgc aaatttgcgt
     2521 ttgccgactt ggtaaacaaa agtgcctttt tgagcagttt gtttcacatc ttccactttt
     2581 tcaccatcaa ttttaacccc gccttgttgg gctgagcgaa ttgcctctga agtggacggt
     2641 actaagccgg cttctttcag tagagccgct aggccgattt caccctcaaa ggtaaattca
     2701 ggcacttcat caggaattgc ccctttttgg aaacggttga taaactcttg ctctgctgca
     2761 tctgctgccg cttcatcgtg gaaacgagcg ataatttctt ttgccagtag aattttcaca
     2821 tcacgcgggt ttttgccatt ttcaacatcc gcttttaatt gtgcaatttc gtctaatgga
     2881 cggaatgaga gcaggttgta ccaatcccac attaaatcgt ctgaaatcga cataattttg
     2941 ccgaacattt cgcttggagc ttcagttaca ccaatgtagt tgccgagaga tttcgacatt
     3001 tttttctcgc cgtctaagcc gacaagtagt gggagtgtca ttgccacttg tggtttttga
     3061 ccggctgatt tttgtaactc acgtccaact aacaagttaa aggtttggtc tgtaccacct
     3121 aattccacgt cagctttcag ttctaccgag tcgtgacctt gtagtagcgg ataaataaat
     3181 tcgtggattg cgatcggttg ttggttcgtg aaacggtttt tgaaatcttc acgttctaac
     3241 attcgagcaa cggtgtagtt ggaggctaag cggatcatac cttccgtacc taacttgcct
     3301 aaccattcgg agttgaatac gatcttggtt ttttgtggat ctaaaatttt gaagatctgc
     3361 tctttatagg tttcggcatt gcgtaacacg tcttcacggc taagtggcgg acgggtagag
     3421 ttttttcctg atggatcgcc taccataccg gtgaaatcac cgattaagaa atagacttcg
     3481 tgtccgaatt gttggaattg acgaagtttg ttcagcacaa cagtatgacc taagtgaata
     3541 tccggtgcag ttgggtctgc ccctaattta atacgcaatg ggcggttttc ttttaatttg
     3601 gtgattaaat cttcttctga ataaatattt tccacgccac gtttaagttc ggcaaggact
     3661 gattcgatag cttgagtcat ttatcttcct tttagtcttg aatataaaaa atggatctat
     3721 tatagcggta tgaattgaaa ttgataggct ataggcgaaa aaaaacgccg tattttgtgg
     3781 gggaatacgg cgtaaagagt tggagtgatt acctattatt tttgaagtga tttaatgata
     3841 atgattatca tctgttaagt caatactttt tttgaaaatt ttcaataaga attattctca
     3901 tcaattaagt aagatggata ctacggcaat tagtgaagaa tgtacagcgg aattttcgta
     3961 ttgtaagagt gttggtaagc ggtattttta gaaaaaacct ccgagagcgg ttatttttcg
     4021 gaggtttttt gcaaatgagg atttacatcg ttgaaatgta tttcaacatc acccccgctg
     4081 caatcgcaga gccaatcacg ccggcaacgt ttgggcccat tgcgtgcatt aacaagaagt
     4141 tttgtttatc gtactcttgt ccgactttgt ttgatacccg tgcagccatc ggcacggcag
     4201 aaacacccgc tgagccgata agtgggttga ttttgtgctg actaaagcgg ttcattattt
     4261 tcgccataat cacaccgctt gcagtgccga tcccaaaggc aatcacgccc aatactaaaa
     4321 tgcctagtgt ttgcggttgt aagaatttgt ctgcgaccaa ttttgccccc accgataacc
     4381 ctaagaaaat cgtcacgata ttgattaacg cattttgggc ggtgtcgttt aagcgttcta
     4441 ctacgccact ggttcgcagt aagttgccaa agcagaacat tcccaataac ggtgcagcat
     4501 ccggcagtaa gagtgccact aataatagca acacgatagg gaaaataatt ttctcacggt
     4561 tgcttacatt acggagctga accattcgga ttttacgttc ttgctcggtg gttaaggctt
     4621 tcataatcgg cggctgaatc agtggcacta acgccatata agaataagcc gctaccgcaa
     4681 tcgcacctaa taattcaggg gcaagtttgc tggcaagata aatcgcggtc gggccatctg
     4741 ccccgccgat aatcccaatc gcagcggctt gtggcaatgt gaagtcgata atgcctaacc
     4801 agtttagccc taatgcaccc agtacggtag caaaaatccc aaattgagcc gcagccccaa
     4861 gcattaacat tcgagggttg gcaagtaaag ggccgaaatc agtcatcgcc ccgacaccca
     4921 taaagataat aagcggagca acgccgtagc cgatagcaac tttatagaat aatgccaaca
     4981 caccggcggt atagcccata tcgccagcca ttacttcaag ctcattttga acagagggag
     5041 cagccagtgc gatggcatct ttaatcgaat gcagatcaag gcttgtacta tttaccttag
     5101 cagcaataat tgccagttgc tcggcagaac cgctgtggag taaattgtct aatgccgtca
     5161 ttgccatacc tgcttccgga atgtttgaca tcaaaccacc aaagccaata ggcagtagta
     5221 aaagcggttc gaattttcgg gcgatggcaa gccaaagcaa cactaaactg atgacaatca
     5281 taatcgcttg ccccagttct aaatgcatta gccccatacc tttaaaaagt gcaataatac
     5341 tttccatacc ggactcctag gcaatactca ttaaagtatc atttaccgcc acaacatcgc
     5401 cttgtttgac attaatgcct tgaatcgtgc cggattttgc cgcacaaatt tgggtttcca
     5461 ttttcattgc ttcaagaatc agtaacacat cgccttcagc aacttgttgc ccctctttca
     5521 cttccacttt caaaatgttc cctgccattg gagcattcac cggttcggca ttggctgata
     5581 gcgtatttgc agattttggt gcagaatcga ccgcttgcgg agccggtgtt gctggtgttg
     5641 gagcgatatt ggttatatcg ccaccttcac tcaccttcac cacaaaggct ttgccttcaa
     5701 gctcaacggt ataaatggct gaaccggatt gtgtttgggc ttttggtgca gaagcagcgg
     5761 aggcttgtgc cggttttgct tcatcagcac ttggcactgg ctcaaaggca gacggattat
     5821 tgcggttttc caaatatttc cagcccactt gttggaagag tgccacaatc aatacatcat
     5881 caatcatgtt ttcagatagc gtaatgcctt tttcttttgc acttgcagtc acttctgcca
     5941 ctaatttttc cagttccggc ggaagatgat cggctgggcg gtcggtaatc ggctctgctc
     6001 cctcaagcac tctgtcttgc aaggctttgt ttaccggtgc cggtgtgcga ccatattcgc
     6061 cttttaaaat acctgcagtt tctttggcga tagttttata acgttcgccc attaatacgt
     6121 tcatcaccgc ttgtgtgccg acaatttgtg aggttggtgt caccaacgga atattgccta
     6181 aatcttcacg cacacgagga atttcttgta aaaccaagtc taatttatcc gacgcatttt
     6241 gttgcttgag ttggctttcg aggttggtca gcatgccacc cggcacttgg gcaaccaaaa
     6301 tacggctatc tataccacgg agctgtcctt caaattttgc atatttttta cgcacgttac
     6361 ggaagtaggc agagattttc tccagagctg gaatgctcaa gccggtttca tacggcgtgc
     6421 cttgaagtgt ggcgacaata gactcggttg ccgggtgacc gtaagtgccg gacattgatg
     6481 aaatggaggt atcgacacca tcgacaccgg cttcaatcgc tttgagcaac gccatttcag
     6541 ccataccggt ggttgaatgg caatggagat gtagctcaac gtcgtagcgt tttttaattt
     6601 cgctgactaa ttcataggct gccattgggg ttaaaatgcc cgacatatct ttgatcacca
     6661 acgaatccac gccaatttcc aataattgct cggttacatc caaccacgtt tgtagggtat
     6721 gaacagggct ggtggtgtaa ctcaaagtac cttgtgcgtg cccgccgtgt tttttgaccg
     6781 cttgtaatgc ggcttgcata ttgcgagggt cgttgagggc atcaaataca cggaacacac
     6841 tcataccgtt tgccaccgaa cgctcgacaa atttatctac cacatcgtcg gcataatgac
     6901 gataacccaa taagttttgc ccacgtagca gcatttgcat tggggttttc ggcattgctt
     6961 ttttcagctc acgtaaacgc acccacggat cttcgcctaa aaaacgaata caactgtcaa
     7021 aagttgcccc gccccaagtt tctaacgacc aatagccgat attatccagc tcggaggcaa
     7081 tcggtaacat atcgtctaag cgtaaacgag tcgcaaaaag ggattggtgt gcatcacgca
     7141 aaaccacatc ggtaatcgca atttttttcg gttgagttgt cataatcaaa ttccttctaa
     7201 ttattttatt tttgaaatct tgttaatgtt gcccgttaat tcgacgatga tgagcaatcg
     7261 cagcggcaat cacagggcgt aaacgctcta aatcatctgg gggagattga ggcacagttt
     7321 tagaggctgg aatagaaaca ggttcgggga aatattgatt gataatcttg gaaataaagc
     7381 tgatggcata aattaaaacc agcaggaaca gcataacaaa tcccattccg gctaccatta
     7441 aatttatacc ttccgcaaag agttctgcag gtgccataat ttatccttaa aatgtagaaa
     7501 tgatgaagaa aatgtagaaa aaattcagat ttatttcaaa ttatttagcc tcaaaatgag
     7561 tggtagatca caaactttaa acgcaagcgg tcagatttta caaatttttt acaagagtag
     7621 ttaaaatttg caaaacctga ccttaggtta gcttgaagct aagtcgttat gccattagcc
     7681 ccgaaatata ttttgaaagg gtcattgcac ttagcaccgc cattagaatc accacaatcg
     7741 cccctgaaac ggtcatccac acagggtgtt tgtagtcgcc cacaatcttg gttttgtgag
     7801 ctgccagcag aattaacccg agggaaatcg gtagaattaa gccgttaagc gtccctacaa
     7861 acaccaagac ttgtgccggt ctgccgatgg ttgccagcac ggcggttgaa accacaataa
     7921 aggcgacaat gaaacagttt ttgtgttttt cgataaatgg cgagaatgaa gtaatgaagg
     7981 aaaccgaggt ataagccgcc ccaatcacag aggtaatgga ggctgcccaa atcaccacgc
     8041 cgaagatcat caaaccgaca tcgccggcaa cgtgggcaaa tggggtagcc gcagggtttt
     8101 tcggatcaag ttgcacgccc attgacacca cgcccagcac cgctaaaaac agtaccacac
     8161 gcataattga ggcgattaaa atggctgaca ccgagctttt gctcacctct tttaaattct
     8221 ctttgccttt aatgcctgca tcaagcaaac ggtgcgcacc agcaaaggtg atgtatccac
     8281 caacagttcc gcccactagc gtgacaatcg caatcacgtc taatttttcc ggcacaaagg
     8341 tatgcaccac cgcatcgtcg attggcagat tggcttttac ggcaacgaag atggttaaag
     8401 caatcatcac aaagcccata atttgtgcaa atctgtccat cactttacca gcttcatgga
     8461 acaggaacac gcccacggca atcgcaccgc tgaccaccgc acccatttca ggggaaagtc
     8521 cggtgagaat gtttagccct aaacctgcac cgcccacgtt gccgatatta aaggctaaac
     8581 cgcccatcac gataagcaga gccagaaagt aacctgcccc cggcaatacg gcattggcga
     8641 tgtcttgagc tttcttttcc gatactgcta caattcgcca aatattcagt tgagcaccga
     8701 tatcaagcaa gatcgagagt aagatcacaa agccgaagct ggcaagtagg gtttgggtga
     8761 aggtggctgt ttgggttaag aaccccggcc cgatggcgga ggtcgccatt aaaaatgctg
     8821 ccccgagtag ggcgctacgg ttgttgtttg acattgtgtt ggttcctttt ttgttgttaa
     8881 tgagtcatta ttcgtggatt tatcatggta atattcccct ctttagcaaa gaggggttag
     8941 gggagatttg gcagtagaac tcatcgaagt gagagagtta ataatgctca atttaacctc
     9001 ttgaaattac ttattttctc cgtaaatcgc ttctgtcaaa tctcccccag cccctctttt
     9061 ctaaagaggg gagttcgatc tccaagagtt ttatttctgg ttttccgtcc attttgacta
     9121 aaacaggatc aggctttcac caaaatcccc tttgcctgta actctttttt aattcgctcg
     9181 gcaaatacca cggcgtgttc gccgtcaccg tgtaagcaaa tgctgtcggc tttaatcgcc
     9241 acattaccac catcaacggt tggtacagtg ccgtctaaca ccatttgcaa gacttggctg
     9301 atcgcttcat catcgctttc taccattgca tcatcacggg tgcgaggcac gagcgagccg
     9361 tcagctaaat agtggcggtc ggcaaagact tcggaaatgg tttccaaacc gtgctgctcg
     9421 gcaatgctca acatcaggct gccggataag cccatcagtt tgaggttggg atcgaactgt
     9481 ttgaccgtat tggcgataag ggtggcaagg tgagggtctt tggcggccat attgtataaa
     9541 gcgccgtgcg gtttaacgta gctcatcggc atattttccg catcacataa ggctttggcg
     9601 gctcccagtt ggtagagcag acaggcttta agttcatcat cgggcagttg catattggta
     9661 cgcccaaagt tttccctatc tggaaaactc gggtgagcgc caactcgcac gctgttttcc
     9721 ttcgcccagt taatcgcttt acgcatttca ttgtaatcac cggcgtgcaa gccacagcag
     9781 acattcgccg aagtaacgag ctgtaataat gaatgatcgt tgccacaacc ttcggcaaga
     9841 tcgacattta aatcaacgtg attcattcgc ttttctccga attgtttcca aataattttg
     9901 atctttttga taaatttcga ccgcttgttc acggcttact tgctcaaatt gcaccgttga
     9961 gccgaacgga ttttgtgcca accgcccgag atcggcctga ataatgcagg caattttcgg
    10021 ataaccaccg gtggtttggg catctgccat cagcacaatc ggctggccgt ccggcggcac
    10081 ttgcaccgta ccactcgggg ctgcgtagga gagcatttca agggaagcgg tcaattccaa
    10141 cgctttttct gcaaaacggt agcccatacg gttgctgttg ttttgcagtt gccacccttg
    10201 ttgccaaaag cgttcacggc tatctgcggt aaaggcttca tattcgctcg aagcggttgc
    10261 ccgaatgcgt gaggtgaaat caatcggctc aatcgacatc aaagaaagtc ggctgtctct
    10321 gcggcctgtg gcgatgttat cgccggcttt taacattctg ccttgaaaac cgccaaattg
    10381 agctttgaga gcggtactta ccgaacctaa cacctgcggc accagaaaac cgcctgccac
    10441 gcataaatag gcgtaattgc cgagaacaat ccgttttatc gtcagcgttt gacgggcgtt
    10501 ggcagtgtag cggtaatagg aaaaaaccgg cgtgccgtcc agctccgcct ccaccaatgc
    10561 accggtgagg caaaatggcg tgtcgcaatc aaaggtaatc cgcattccgc caagggtaag
    10621 ttcaatcgca ggtgcattat ttgcattttt taacaataaa ttacccgctt gtaaggcaag
    10681 gctgtccatc gcaccgccgt ggctcacgcc taaatggcga taaccataac gccctaaatc
    10741 ttgaatgtgg gcaaaaccct gtattatttc gatataaatc atagcgttat actctccgcc
    10801 acaaatctaa cattatcgcc ggctgtaagt agcgttggcg gattgtgttg aatatcaaac
    10861 aacggtaact cggttcgtcc taacagttgc cagccacctg gtgaggtaaa gggataaatg
    10921 cctgtttgcc tgccgccgat gccgaccgaa ccggcaggga ctttggtgcg aggcacgttt
    10981 cggcgtgggg tgtgtaaatt ttgcggtaag ccgttgaggt aaggaaagcc gggttgaaag
    11041 ccgatcataa acacggtgta agtcggttcg gtatgacggc ggataatctc ttcgggagtg
    11101 gtattgtgga attgggcgac ttcaaacaga tcttcgccaa attcaccgcc gtaatggaca
    11161 gggatttcaa tcaggcgtgg ggattgtgcg gcttgggctt ggtcgttttc ccagagttgt
    11221 tgaaccgctt ggataaggcg tgtgctatcg gtgccaatgg cgtgaaatag ggtaaaattg
    11281 ttcattccta ccaccacttc caacacgcca tctaaggctc ttgcctgttc tgccacccgc
    11341 caaatctgtt gctgtttggc aagctctgca ggcggttcgg ctaagcagag cagggaatgt
    11401 tcgctggtat gatgaatcgt cagcataatt gccctcaaat tgttacaaaa aggtaacaac
    11461 tttttacgct gatatatcca gactgtcaat tttattttgt tgaaaatgtg aaatagctct
    11521 taattttcag aaatttgatc atttcttatt cgccaaaacg ttgcaaatct gggcttgcct
    11581 gattctgtga cacctcgata tttataggta atgattgagc caatcggtgg cggattttct
    11641 cgttctttat ctttaaaacc gctgccaatc cgaaaacgtc cacgttgatt ttcacaagtg
    11701 attgccccga gtttatcggt atatttccct ttgcctttat gatgggcaac cacagtgcat
    11761 tcctcatcta aaaccggttt gattttcaaa atttgggcag aacgaccttg aatatagcct
    11821 gcattcgggt tgcgaacgat aaccccttcg ccaccttgtt ccagcacaga ttggtaaaat
    11881 tgttgaaggt gggctttatc tttaatcgga atttgctcaa taatagcgat atggagcgtt
    11941 ggatgttgct tcagataatt ctctaaggtc gccagccgtt caatcaaatt cccttgtgca
    12001 tttggcacat cgaacacctg taatttcagc ttgtgccaac ctttgggctg agcggaacgc
    12061 acaatgcttg aaatttcctc aaatttgccc cgttcgctaa acagttcgcc gtcaatcgca
    12121 aaaggaggga aatcttgaat aaaatagtcg ggtggattga gcggataacc ttggcggctg
    12181 atgagctgtt gaccgtccca aaagcctcgc acgccatcga gtttttctga cattacccag
    12241 ccactgatgt cttgatcttg atattgctca acgagcatta actcgggcga tttggcaaaa
    12301 atagggttac caatgaagag taggaataag agcagttttt tcatagtctc tccgaaatag
    12361 tgcctccgaa tatgcaaggc actataaagg aaagcgtgca aacagtcaga aatgaatctc
    12421 aatttttcga cgcagatcgc aaaattttcc gaaaaactga tcgcttgagt gagaaattta
    12481 acgtactgtt tgaattaaag cagaaatatc ctcgctaaag gtttccaact tcgccatttc
    12541 ttcaatttgg ctatgagaat atttcttcac attgtaaacg accaccatac ttacatcacc
    12601 tacttgcaat aaattacttt cgccaaaagg cgtgtagcgt gttgccccaa tgctgataat
    12661 cgctttagtt gggtagtttg cctgttttaa catttcggaa atgttgttca tcggaccttc
    12721 atcgggctga ttattcattc tctctacaat ccaatcgagc aatttttgat ggaaatagct
    12781 gtactccacc gcagggctgt cgatgccgta ggtattcagc tcgccattac gtttatggaa
    12841 acaagcgatg ttgtaattat ccagcgtgcc gcctttgttg aagttatcta acggaagatg
    12901 aattgccgaa agccctttag acgaagcccc ccagtttttc ttttcacaga ttttattcgc
    12961 attcggacgg cggatagagc agtcattgta agccgcaaaa tgggttggcg tgagcgaaac
    13021 cacttgctga tcttggtagc caatttcaca aattaacgcc acttcaggct caatttgcag
    13081 attatcagca tcactcggga aattaatcgc agtatttgaa agcggatagg tggataaaaa
    13141 ctgataatcc cccaaatttt ccgccggcac ataaaacggg aaaatcgcct ttggctgcac
    13201 tgcttccact gttttcactt tcgcaaaatc cgcctcctct ccggcttgtt ctaaatgtcc
    13261 agcaaaattg ccggccacgc ctaaaccgat aaagtgttcc ataatctact ccttaattgg
    13321 taaaagttgg ataaaatttt accgcttgta accaaaaatt gcgaat
//
LOCUS       DANLRW010000073        13188 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.073, whole genome shotgun sequence.
ACCESSION   DANLRW010000073 DANLRW010000000
VERSION     DANLRW010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13188
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.073"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            114..1424
                     /locus_tag="PXA71_001738"
     CDS             114..1424
                     /locus_tag="PXA71_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase
                     domain-containing protein"
                     /protein_id="HDL5105834.1"
                     /translation="MDISWYKPRNYLHFDSPITLQQAIKLVANPNNVVKHSFYPFLSY
                     TLSVAKIKKDKNEGKLVRLIKNRGISYSSHKDSHIFSYYAYLLNEKYENLLKNKYYIL
                     DDSILAFRKLNKSNIDFARIAFDSIRSAQNCTVLGLDISKFFDHIDHKILKDMWCKVL
                     GVPSLPEDHHSVFKAITKFVKVDRDTVFEFFNISLHNPRKNGKNRICSPREFREYRKL
                     KKPDLFNDNPAFFINKGQKGIPQGSPISALLSNIYMLEFDVLVKEKIMECKGSYFRYC
                     DDILCIIPNEYEEFILDYITGEIKSKLKLEINKDKTEVVKFQYCNRTKKIINEKKLQY
                     LGFILHNNSISIRSSAFTRYSNKMKRGVSLAKQTQGKYNRIRIRRGVAIKGIYKRKLF
                     SKYSHFGKSNFISYGKRAYSSMDSKVIKNQLKPLWYRLKKEIYL"
     gene            complement(1676..2956)
                     /gene="hemL"
                     /locus_tag="PXA71_001739"
     CDS             complement(1676..2956)
                     /gene="hemL"
                     /locus_tag="PXA71_001739"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005721785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDL5105835.1"
                     /translation="MSISEQLFEQAQKVIPGGVNSPVRAFKGVGGTPVFIEKAEGAYI
                     TDSDGKQYIDYVGSWGPMVLGHNHPAIIDAVLKAVPKGLSFGAPTAAEITLAELVCKL
                     VPSIEMVRMVSSGTEATMSAIRLARGYTNRDKIIKFEGCYHGHSDSLLVKAGSGALTL
                     GQPSGPGVPADFAKHTLTCTYNDLDSVKAAFEQYPNEIACLIVEPVAGNMNCIPPQEG
                     FLQGLRDLCTQYGAVFIIDEVMTGFRVALGGAQSYYGVTPDLTTLGKIIGGGMPVGAF
                     GGKKEIMEYIAPTGPVYQAGTLSGNPIAMAAGLACLTELSKAGNETILAEKTKTLAEG
                     FKALADKHNVPLTVQYVGGMFGLFFTEQKAVNNFQEVMKCDAAKFNRFFHLMLEQGVY
                     LAPSAFEAGFMSLAHSDEDIARTLEAADKAFAQL"
     gene            3098..4162
                     /gene="wecA"
                     /locus_tag="PXA71_001740"
     CDS             3098..4162
                     /gene="wecA"
                     /locus_tag="PXA71_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HDL5105836.1"
                     /translation="MWLTFLTVFIVSFLALIVMRPVAEFVGLVDKPNFRKRHQGLIPL
                     IGGIALFIGNLTFYFMQWQDMRLPELYLTAVTILLIIGVLDDRFDISPLLRAGIQAAL
                     AGAMIYSGLSLSSLGQIIAPFSIELGWLGIVFTVFITIGVINAFNMVDGIDGLLAGLS
                     SVSFAGLGTLMFINGEPSLGYWCFALIFVLLPYAMFNLSLFGAKWKVFMGDSGSMLIG
                     FTIIWILLLSTQGQGSPISPITGLWLIAVPLIDMVAVIIRRLKKGKSPFKPDRLHLHH
                     LMMRAGLTSRQALLVITLWAGFCSTIGVLGEVYYWNQWVMMLMFIGLFFLYAYSITHA
                     WRVTRFVRRLKRRAKRSKQL"
     gene            4173..4985
                     /locus_tag="PXA71_001741"
     CDS             4173..4985
                     /locus_tag="PXA71_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS chain length-determining protein"
                     /protein_id="HDL5105837.1"
                     /translation="MKTLFYRLLVLILFAAIGAGAGYGLSYTQPEKWKVTAQFEQPTI
                     PDLGNYYSLLSTYHFLNSNSQEANSQTAQQQASEQVYAEFKRNLTSADLLQAYLLQTE
                     AVKLKAQVAKKSPAVVAAELVEQFRFEKDMATSADNVSLIAENAEEAQKLLADFIPLV
                     NTQARDKLNADLIAKWKVLFQQIKTASELNINGKQGSQDWAAKLQMMRSVQPLDNQLT
                     AYRLVKSPSVPLKSESPDPPILADDWGIKWLTAGLYAQFCGESESSTCGTLI"
     gene            5026..6273
                     /gene="wecC"
                     /locus_tag="PXA71_001742"
     CDS             5026..6273
                     /gene="wecC"
                     /locus_tag="PXA71_001742"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HDL5105838.1"
                     /translation="MMSKTEFNTICILGLGYIGLPTSVVFANAGKQVIGVDINPQVVA
                     SLNQGNIHIIEPDLQTAFTQAVKKGNFFATAKPQPADAFIIAVPTPLCGKQPDLTYIQ
                     NAAAMIAPCLRKGNLVVLESTSPVGTTENLAEWLSQARPDLAFPADVSIAYCPERVLP
                     GNIMTELVENDRIIGGLSEQCSQQAVDLYQIFAKGRCVTTTARTAEMCKLVENSFRDV
                     NIAFANEISMICDALKINVWELIELANLHPRVNILQPGAGVGGHCLAVDPWFIVSTSP
                     QQARLIRTAREVNDSKPQWVIEQVKTSVADCAMEQDCKPSELTIACLGLAFKPNIDDL
                     RESPALAITRQLAAWHQGSLLAVEPNIQQLAGEKITLVDLNTALSQADILVLLVDHTS
                     FKQISREQIRQRHIIDCRGVWVR"
     gene            6270..6914
                     /gene="rffC"
                     /locus_tag="PXA71_001743"
                     /gene_synonym="wecD"
     CDS             6270..6914
                     /gene="rffC"
                     /locus_tag="PXA71_001743"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HDL5105839.1"
                     /translation="MKPDQWLSDFFGREIVQVKVAADDFRQIARLQKQGFVLVEGELE
                     FELALATFSENMTACRPADMADLPDLNLLFGSAFPDSRFRSPYFSREENQRFYRTWIE
                     NAVKGKFDDIGLVQCNADGQIQGAVTVRLLAQQQAKIGLLAVKPDCRQQGIGSELLNA
                     AIAWAKQQNAKKLMITTQLSNQKAIRFYQAFGASIKAVYYWFYPALEKYDDEQS"
     gene            6901..8044
                     /gene="rffA"
                     /locus_tag="PXA71_001744"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /pseudo
     CDS             6901..8044
                     /gene="rffA"
                     /locus_tag="PXA71_001744"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251256.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
     gene            complement(8088..9509)
                     /gene="glnA"
                     /locus_tag="PXA71_001745"
     CDS             complement(8088..9509)
                     /gene="glnA"
                     /locus_tag="PXA71_001745"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011298219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDL5105840.1"
                     /translation="MSNAIANVSKLIQDNDIKFVLLKFTDIKGKEHGVSLPVSLVAND
                     LEDLFEEGKMFDGSSVEGWKAINKADMLLMPIAETAVVDPFARIPTLSIRCSIYDPNT
                     MQSYDRDPRSIATRAENYLKSTGIADSVMFGPEPEFFLFDDVRFSTEMNNVSYRIDDV
                     EAAWNTNRKFEEGNKAYRPLKKGGYCAVAPIDTAHDIRSEMCLLMEEMGLVIEAHHHE
                     VATAGQNEIATRFNSLTLKADETQIYKYIVQNVAVEHGKTACFMPKPFAGDNGSGMHC
                     NMSLSKDGKNVFMGDKYAGLSETALYYIGGIIKHAKALNAFTNPTTNSYKRLVPGFEA
                     PVLLAYSASNRSASIRIPAVTSPKATRVEARFPDPMANPYLCFAALLMAGLDGVINKI
                     HPGDAMDKNLYDLPPEELKDIPTVASSLESALDALSNDFEFLTQGGVFTKDFIDAYIG
                     IRRKEVERVNMTPHPVEFELYYS"
     gene            9696..10766
                     /locus_tag="PXA71_001746"
     CDS             9696..10766
                     /locus_tag="PXA71_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HDL5105841.1"
                     /translation="MLPIYHILGSEIEHHNQQVLTFFQQELLPLLPDSEHFFYVVGKP
                     SLQTAFPHLRIKQFSSQKAIANALIAKKRQNPTACFLLHGQFNPWIWLAIALGRLPTT
                     NLIWHIWGADLYEMATSWKFKLFYPFRRVAQQKILQVWATRGDLDHLWRNMRTRSEQD
                     HLIYFPTKLGDQIKISPTQNDRLTILLGNSGDPANELIQALSEIHQRLGNNVRIIIPM
                     GYPENNESYIRQVEAYSKRLFLAENLQILRKKLSFEEYVTLLSHCDLGYFNFKRQQGI
                     GTISLLISHNVPCVLHSANPFGLDLQAEKVPYLLAENLTASQIQTTKQQLKSIDKNRI
                     AFFAPGYTKLWQQRLIELMQNE"
     gene            10759..12030
                     /locus_tag="PXA71_001747"
     CDS             10759..12030
                     /locus_tag="PXA71_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WzyE family oligosaccharide polymerase"
                     /protein_id="HDL5105842.1"
                     /translation="MNNLIPLGGFYLVSVGLFFSLLYQLYQKSGISFHLLFSLLYFVT
                     FYAGFPFSLIMAFGFDYPLPELKTQWQVFTAAGVGYLIYYVVYSRLWSAVSQPTALVA
                     NFQAKTTACILAAVAVVALLYFLYLNGFLLFKLEKYSQLFAKDRVILSALKRFFYFLL
                     PALLIFCFLYKNKTAWWALLIVGGAFGILSYVAVGGTWANLALAVGFFLLIGLQQGYL
                     SLSKVIAVSLIGVVAMFFLALARYKLTLSGSEMIYTFLYLSRDTFSPWENLARVFSNE
                     VEYQGLMPIVRDFYVYIPQSLWQERPEIVWNTANYFTKVILGNQSGLAISPTLLGSFY
                     IMGGFSVMALGMGIVAAMIKALDNLFAYAKACNSALLQAYCFGNLFNLIVLVREGIDA
                     FVSRFCFFTLIFMACYLLAKILSMGKNNNVR"
     gene            12020..12742
                     /gene="rffM"
                     /locus_tag="PXA71_001748"
     CDS             12020..12742
                     /gene="rffM"
                     /locus_tag="PXA71_001748"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HDL5105843.1"
                     /translation="MFDKVIIRGIALQAVKNREIFANWLMNEKRIQFGRLVAINAEKV
                     ILSEKNPLLRRVIDEAEFNYADGISVVQSIRKKYPNYKIERIAGADLWETLMQRAGAL
                     NVPVFLVGSSADTLTKVEAKLAQWKVNIVGRQNGYFKAEQEQDVIEQIKASGAKFISV
                     AMGTPKQELFIQQLQQQYPQALYMGVGGTYDVFAGKVKRAPKIWQNLGLEWLYRLLKQ
                     PTRWQRQLNLLKYAYYYLTNQL"
     gene            12901..12977
                     /locus_tag="PXA71_001749"
     tRNA            12901..12977
                     /locus_tag="PXA71_001749"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12935..12937,aa:Arg,seq:ccg)
     gene            13007..13082
                     /locus_tag="PXA71_001750"
     tRNA            13007..13082
                     /locus_tag="PXA71_001750"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13040..13042,aa:His,seq:gtg)
     gene            13107..13183
                     /locus_tag="PXA71_001751"
     tRNA            13107..13183
                     /locus_tag="PXA71_001751"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13141..13143,aa:Pro,seq:tgg)
BASE COUNT         3679 a         2581 c         2977 g         3951 t
ORIGIN      
        1 attcgacggg tatcctaagg tacctaggct atataaagac tgttaactat tcaaatagtt
       61 agggacaacc gcaatcctta gtctttagtt ttgctttcat taaattttct attatggata
      121 tatcttggta taagcctcgt aattacttac atttcgattc acccataact cttcaacaag
      181 caattaaatt agtcgctaat ccaaataatg tagtaaaaca tagtttctac ccattcttat
      241 cttatacact atctgtggct aaaataaaaa aggataaaaa tgaaggtaaa ttagtacgtt
      301 taataaaaaa tagaggaata tcttattcat ctcataaaga tagccatatt tttagttatt
      361 atgcatattt attaaatgaa aagtatgaaa atcttttgaa aaataagtac tatattttag
      421 atgattctat attagcattt agaaaactaa ataaaagcaa tattgatttt gccagaatcg
      481 cttttgatag tattcgaagc gctcaaaatt gcacggtttt agggctagat atatctaagt
      541 tctttgacca tatagaccat aaaattctga aagatatgtg gtgtaaagtt ttgggtgtac
      601 ctagtttacc tgaagaccat cattctgtat ttaaggctat tactaaattc gtaaaagtag
      661 atagagatac tgtatttgaa ttctttaata tctcccttca taatcctagg aaaaatggga
      721 agaatagaat ttgtagccct cgggaatttc gagaatatag gaaattaaag aaacctgact
      781 tatttaatga taatccagct ttttttatta ataaaggcca gaaagggatt cctcaaggtt
      841 ctccaataag tgcattgtta tccaatatct atatgttaga gtttgatgtg ttagttaaag
      901 aaaagattat ggagtgcaaa gggagttatt ttcgttattg tgatgacatt ctatgtatca
      961 ttcctaatga atacgaagaa tttattctcg attacatcac tggggagata aaaagtaaat
     1021 taaaactaga gataaataag gataaaactg aggttgttaa attccaatat tgtaatagaa
     1081 caaaaaaaat aattaatgaa aagaagttac aatatcttgg ttttatattg cataataact
     1141 ctattagtat tagatcatcg gcatttacac gatattcaaa taaaatgaaa cgaggggtta
     1201 gtctagctaa gcaaactcag ggtaaatata ataggataag aataagacga ggggtagcta
     1261 tcaaaggcat ttataaaaga aagctatttt ctaagtattc tcatttcgga aaatctaatt
     1321 ttatctctta tggaaagaga gcttattcat ctatggattc caaagttata aagaaccaac
     1381 ttaaaccttt atggtataga ttaaagaaag aaatatattt gtaatattag aaagtgtaag
     1441 acttgtcctt gcctgcaagt gttggaagcc catatattgc tttatcaatc ctattccctc
     1501 gatagcgccc gtctccagac gggtgcttgt ttaagcataa tgaaagtttg tataagcact
     1561 cgtcagagac gaacaccatc ataattgcta tcgtaagaga aatttgcact acaagcggtc
     1621 aaattccctc aaaaacttgc aaattattga gtaaacccaa ccgcttgtca ttcttctaaa
     1681 gctgagcaaa tgccttatcc gcagcctcta gcgtacgagc aatatcttca tcactgtgag
     1741 ctaaagacat aaaccctgcc tcgaatgccg atggggctaa atacacgcct tgttccagca
     1801 ttaagtggaa gaaacggttg aatttggcgg catcacattt cattacttct tggaagttgt
     1861 ttactgcttt ttgttcggtg aagaataagc cgaacattcc gccgacatat tgtaccgtta
     1921 atggcacatt gtgcttatct gcaagagctt taaagccttc agcgagggtt ttggtttttt
     1981 ccgctaaaat ggtttcattt cctgcttttg ataattcagt taagcatgcc aaacctgcag
     2041 ccattgcaat cgggttgcct gagagcgtgc cggcttggta aaccgggcca gttggagcga
     2101 tgtattccat aatctctttt ttaccaccaa atgcccccac cggcattccg ccgccgataa
     2161 ttttgccgag tgtggttaaa tccggtgtta ccccatagta agattgagcc ccaccgagtg
     2221 cgacacggaa gccggtcatt acttcatcaa taataaatac cgcaccatat tgtgtgcaaa
     2281 gatcacgtaa gccttgtaaa aagccttctt gtggcggaat gcagttcata ttgccggcaa
     2341 caggctcaac aattaaacaa gcgatctcat ttgggtattg ctcaaatgct gcttttactg
     2401 aatctaaatc attataggtg caagtaagcg tatgcttggc gaaatcagcg ggtacgcccg
     2461 ggccgcttgg ctgaccgagg gttaaagcac ctgaaccggc ttttactaac agagaatcgg
     2521 aatgcccgtg gtagcagcct tcaaatttga tgattttatc tcggttggta tagccacgag
     2581 ccaaacgaat ggcagacatt gttgcctctg ttccgctgct caccattctc accatttcaa
     2641 tagaaggtac taatttgcac actaattcgg caagtgtgat ttctgctgcc gttggggcac
     2701 cgaaacttaa gccttttggc acggctttta gcaccgcatc aataatcgcc gggtggttat
     2761 gcccgagtac cattggcccc caagagccga catagtcgat atattgtttg ccgtcgctgt
     2821 cggtaatata agcaccttcg gctttttcaa taaaaaccgg tgtgccgccc acgcctttaa
     2881 atgcacgcac aggggagttc acaccgcccg gaatcacttt ttgggcttgt tcaaacagtt
     2941 gttctgaaat agacatatca attcctttct tttgatgtaa aaatttgcct gttattgtac
     3001 tgaaaagccc ttgttttcgc taaaaaattt acgattttgt tgccttatgc tattctgcat
     3061 tcctatttta tgactcattt tttgaggcaa tccctgtatg tggcttactt ttttaaccgt
     3121 atttattgtt tcttttttag ccctgattgt gatgcgtccg gtggcggaat ttgttggttt
     3181 ggtagataag cccaacttcc gtaaacgcca tcaggggttg attccgttaa tcggtggtat
     3241 tgcattattt atcggcaatc tcactttcta ttttatgcag tggcaagata tgcggctgcc
     3301 ggaactgtat ctgacagcgg taactatttt gctgattatc ggcgtgttag atgaccgatt
     3361 tgacatcagc ccattactgc gtgccgggat tcaagcagca ctagctgggg cgatgattta
     3421 cagtggcttg tcgctcagca gtttagggca aattattgcc ccctttagta tagaattagg
     3481 ttggctcggc attgtcttta ccgtgtttat caccattggc gttattaatg cgtttaatat
     3541 ggtagatggg attgatggct tattagcagg gctttccagc gtgagttttg ccggtcttgg
     3601 cactttaatg ttcattaatg gcgaaccaag tttgggctat tggtgctttg cccttatctt
     3661 tgtgttgttg ccgtatgcaa tgttcaattt gagcctgttt ggggcgaaat ggaaagtgtt
     3721 tatgggcgac tcaggcagta tgctgatcgg ctttaccatt atttggattc tgctgttaag
     3781 cacccaaggg caaggctcgc caattagccc gattaccggt ttgtggctga ttgccgtgcc
     3841 gttaattgat atggttgcgg tgattatccg ccgtttgaaa aaaggtaaaa gtccgttcaa
     3901 accagaccgc ttgcacctac accatttaat gatgcgagca gggcttacct ctcgccaagc
     3961 attattggtg attaccctct gggcgggatt ttgttccacc attggggtat taggcgaggt
     4021 gtattattgg aatcagtggg tgatgatgct aatgtttatc gggctgtttt tcctatacgc
     4081 ctattccatt acccacgctt ggcgtgtaac ccgttttgtt cgccgtctaa aacgccgtgc
     4141 aaaacgtagc aaacaacttt aaaggatatg ttgtgaaaac cttattttat cgacttttag
     4201 tgctaatttt atttgctgct atcggggcag gtgccggtta tgggctgagt tatactcaac
     4261 ctgaaaaatg gaaagtgacc gctcaatttg agcaaccgac tattcccgat ttaggtaatt
     4321 attactcgtt actttccacc taccattttt tgaatagtaa tagccaagaa gcgaatagcc
     4381 aaacggcaca gcaacaggca agtgagcagg tttatgcgga atttaaacgc aacctcacgt
     4441 ccgccgactt gcttcaagcc tatttgctac aaacagaagc ggtgaaatta aaagctcagg
     4501 ttgcaaagaa atcaccggcg gtggtggcgg ctgaattagt tgaacaattc cgttttgaaa
     4561 aagatatggc aacttcggca gataatgtca gcttaattgc agaaaatgcg gaagaggctc
     4621 aaaaattatt agccgatttt attccgttgg taaacaccca agctcgagat aaattaaacg
     4681 ccgatttaat tgcgaaatgg aaagtcttgt tccagcaaat taaaactgct tcggagttga
     4741 atattaacgg taagcaaggc tcacaagatt gggcagctaa actgcaaatg atgcgttctg
     4801 ttcagccgtt agacaaccaa cttacagctt atcgcttggt taaatcgcct agcgttccac
     4861 ttaaatcaga atcgcctgat ccgcctattt tggctgatga ttggggcatt aagtggctta
     4921 ctgctgggct ttatgctcag ttttgcggtg aaagcgaaag ctcaacctgc ggaactttaa
     4981 tctaaaatgg cacacaattt agtgtgccat ttctctttgt aactgatgat gagtaaaact
     5041 gaatttaaca ctatttgtat tctggggtta ggctatatcg gcttgccgac ctcagtcgtt
     5101 tttgccaatg ccggcaagca agtaattggg gtggatatta atccgcaagt ggtggcaagc
     5161 cttaatcaag gcaacattca tattatcgag ccggatttac aaactgcctt cacacaagcg
     5221 gtcaaaaaag gtaatttttt tgcaactgcc aaaccgcaac cggccgatgc ttttatcatc
     5281 gccgtgccaa ccccactttg cgggaagcag cccgatctca cttatattca aaatgccgcc
     5341 gctatgattg ccccttgttt gcgtaaaggg aatttggtgg tgctggagtc cacttcgcct
     5401 gtcggtacaa cagaaaattt agccgaatgg ctaagccaag ctcgccctga tttagccttt
     5461 ccagccgatg tgtctattgc ctactgccct gaacgtgttt tgccgggtaa tataatgacg
     5521 gaattggttg aaaatgaccg cattatcggc ggattaagcg aacaatgcag tcaacaagcg
     5581 gtcgatttat accaaatttt tgcaaaagga cgttgtgtca ccaccacagc tcgcacagcg
     5641 gagatgtgca agttggtgga aaacagcttt cgtgatgtga acattgcctt tgccaatgaa
     5701 atttcaatga tttgtgatgc gttgaagatc aatgtgtggg agctaattga attggcaaat
     5761 cttcacccga gagtaaatat tctccagccc ggagcagggg tgggcggaca ttgtttggcg
     5821 gttgacccgt ggtttatcgt ttccacatcg ccccaacagg ctcgccttat tcgcacggca
     5881 cgagaagtga atgacagcaa accgcaatgg gtaatcgagc aagtgaaaac atcggtcgca
     5941 gactgtgcga tggagcaaga ttgtaagcca agtgagctaa ccatcgcttg tttagggcta
     6001 gctttcaagc cgaatattga tgatttgcgg gaaagcccgg cattagcgat tacccggcaa
     6061 cttgccgctt ggcatcaggg tagcctgttg gcggttgagc caaatattca acagctggct
     6121 ggcgaaaaaa tcaccttagt cgatctcaac accgcacttt cgcaggcaga cattttagtc
     6181 ttgttagtgg atcacacttc atttaagcaa atttcaaggg aacagatcag gcaacggcat
     6241 attattgatt gtcgaggagt gtgggtaaga tgaagccgga tcaatggctg tccgattttt
     6301 tcggtagaga aattgtgcaa gtaaaagtag cggctgatga ttttaggcaa atcgctaggt
     6361 tgcaaaaaca aggttttgta cttgtggagg gagaattgga atttgagctg gcacttgcaa
     6421 cattttctga aaatatgacc gcttgtcgcc cggcggatat ggcagatttg cccgacttga
     6481 acttattgtt tggttcggca tttcccgata gccggtttcg ttcgccctat ttttcaaggg
     6541 aagagaatca acgcttttac cggacttgga ttgaaaatgc ggtaaaaggc aagtttgatg
     6601 atattggctt ggttcaatgc aatgctgacg ggcaaattca aggggcggta acggttcgct
     6661 tacttgccca acagcaagcg aaaatcggat tattggcggt aaagcctgat tgccgacaac
     6721 aaggtattgg ctcggaattg ttaaatgctg cgatagcgtg ggcgaaacag caaaatgcga
     6781 aaaaactgat gattaccact cagctgagta accagaaagc gattcgtttt tatcaagcgt
     6841 ttggtgcaag cattaaggcg gtgtattatt ggttttaccc tgctttggaa aaatacgatg
     6901 atgaacaatc ctgattttat tccgtttaat caacccccgg ttgtgggggc ggagcaagcc
     6961 tatatagaac aggcgatggc aacagggcag ctttcgggcg gtggtaaatt cacccgctta
     7021 tgtgagcagt ggcttgaaaa cctggcccgt agcaaagtgt tgcttacccc ttcttgcacg
     7081 gctgcgttag agatggcggc aatactgctg gatattcagc cggacgatga agtgattatg
     7141 ccgagctata cttttgtctc tactgcaaat gcgtttgcgt tgcgtggggc aaagattgtg
     7201 tttgtggata ttcgtccgga tacaatgaat attgatgaac gcaaaattga gcaagccatt
     7261 accccaaaaa ccaaagtgat tgtgccggtg cattatgccg gcattgcttg tgatatggat
     7321 tcaataatgg caacagccga aaaatacggg ctttatgtgg tagaagatgc ggcacaggca
     7381 gtcaattcgt tttataaagg tagggcgtta ggttccatcg ggcatattgg ttgctatagt
     7441 tttcacgaaa ccaaaaacta taccgctggc ggtgaaggtg gggcgatcgt gattaatgag
     7501 gcatttgctg gaaaaagcgg aaatcatcag agagaaaggc actaaccgta gccaattttt
     7561 tcgtggtgag gtagataaat atcgctggca ggatattggt tcaagttttt taatgtcgga
     7621 aattcaagcg gcttatttgt atgctcagct tatagaggca gataaaatca accaacagcg
     7681 tttaaccctt tggcacaatt actatcaagc ctttttgcca cttgcccaaa cagctaagtg
     7741 cgagcttcct cgcattggcg aatattgtcg ccataacggg catttgttct acttaaagct
     7801 aagtgacttg aagcagagaa ctgcttttat tgattttatg aaggcacaga atatcttaac
     7861 cgtgtttcat tatgtgccgt tgcacagcag tccggcaggg cagaaattag gtcgattagc
     7921 aggtgatgat cgctttacta ccttagaaag cgaacggttg gtaagattgc cactgtttta
     7981 taatttgagt aagcaggagc aagagcgtgt tattcaagca gtgcttgctt tcttcaatca
     8041 ataaaaaacg gctgagtgtt tcagccgttt tttgctatat gttgttacta tgaatagtaa
     8101 agttcaaatt ctaccgggtg cggagtcata tttacacgtt ccacctcttt gcgacgaata
     8161 ccgatataag catcaataaa gtctttcgtg aacacgccac cttgtgttaa gaattcaaaa
     8221 tcattgctta atgcgtcaag agcggattct aaagacgagg caaccgttgg aatatctttt
     8281 aactcttccg gcggtaaatc gtataagttt ttatccattg catcgcccgg gtggattttg
     8341 ttgatcacac cgtctaagcc agccattaac agggcggcaa agcaaaggta tgggtttgcc
     8401 attggatccg ggaagcgtgc ttctacacgg gtcgctttcg gactggtcac agccggaata
     8461 cggatagagg cagagcggtt acttgcagaa tatgccaata acaccggtgc ttcaaaaccc
     8521 ggcactaaac gtttataaga gttcgtggtt gggttagtaa aggcatttaa tgcttttgcg
     8581 tgtttaatga taccgccaat atagtagagg gcagtttcag ataagccggc gtatttatcg
     8641 cccataaaca catttttgcc gtctttgctt aatgacatat tacagtgcat tcccgagccg
     8701 ttgtcgccgg cgaacggttt tggcataaag caagcggttt ttccgtgttc tacggcaaca
     8761 ttttgcacga tgtatttata gatttgggtt tcatcggctt ttaaggtcag gctgttgaat
     8821 cgggttgcga tctcattttg tccggctgtc gcaacttcgt ggtggtgagc ttcaatcact
     8881 aaacccatct cttccatcaa taaacacatt tcggagcgaa tatcgtgggc ggtatcaatc
     8941 ggtgcaaccg cacagtagcc gccttttttc aacggacgat aggctttgtt gccttcttca
     9001 aatttacggt tggtattcca agccgcttct acatcgtcaa ttcggtatga cacattgttc
     9061 atttcggtgc taaaacgcac atcatcgaat aagaaaaatt caggctcagg tccaaacatt
     9121 acgctatcgg cgataccggt ggatttcaag tagttttcgg cacgggttgc aatagagcga
     9181 gggtcacggt cataagactg cattgtgttt gggtcgtaaa tggaacaacg aatagaaagg
     9241 gtaggaatac gggcgaaagg gtcaactaca gcggtttcag caatcggcat taacaacata
     9301 tctgctttgt taattgcctt ccaaccttct acggacgaac cgtcgaacat tttgccttcc
     9361 tcgaataagt cttccaaatc gttggcaact aagctgacag ggagcgaaac cccgtgttct
     9421 ttacctttaa tatcagtaaa ttttaataag acaaatttaa tatcattgtc ttgaatcagt
     9481 ttagatacat tagcgattgc gtttgacata gtaaaataag tcctcgttgg gataaatgaa
     9541 taataaaaaa gctcggttat catagcattt tttaaccaag tgtgtgatgt tttttagtgt
     9601 ttcaaagcta aaagaagttg cagtaatgtt gcaaattttt gctaaaatct taccgcttgc
     9661 atattgtttg tatggtgggg agagaaaagc gtgtaatgtt gccgatttat catattctag
     9721 gctccgagat tgagcatcat aaccaacagg ttttaacctt ttttcagcaa gagcttttgc
     9781 cgttattgcc agactccgaa catttttttt atgtggtagg caagccttca ctgcaaactg
     9841 cttttcctca tttgcggatt aagcagttct cttcacaaaa agcgattgcg aacgccttaa
     9901 ttgcaaaaaa acggcaaaat ccgaccgctt gttttctgtt acacgggcag tttaaccctt
     9961 ggatttggct ggcgatagcc ttaggcagat tgccgaccac caacctgatt tggcatattt
    10021 ggggggcgga tttatatgaa atggcaactt cgtggaaatt taagctgttt tacccgtttc
    10081 ggcgtgttgc ccaacaaaaa atcttacagg tttgggcaac aagaggcgat ctggatcatt
    10141 tgtggcgaaa tatgcgtaca agatcagaac aggatcattt aatctatttc cccacgaaat
    10201 taggtgatca aataaaaatt agccccacac aaaatgatcg cttgacgata ttgctcggca
    10261 attcaggcga tccagcgaat gagcttattc aagccttaag cgagattcat caacgactag
    10321 ggaacaatgt gcggattatc ataccaatgg gctacccgga aaataatgaa agctatattc
    10381 ggcaggtgga agcctatagc aagcggttat ttttggcgga aaatttgcaa attttgcgga
    10441 agaagctgag ctttgaagag tatgttacgt tattgagcca ttgtgatctc ggctatttca
    10501 attttaaacg ccagcaaggc attggcacga taagcctttt gattagccat aatgtacctt
    10561 gtgtgttaca ttcagccaat ccgtttgggt tggatctaca ggcagaaaaa gtgccttatt
    10621 tgttggcgga aaatctgact gcttcacaga ttcaaacaac caaacaacaa ctaaagagca
    10681 tagataaaaa ccgcattgcg ttttttgctc cgggctacac taaactatgg caacagcgat
    10741 taatcgaatt aatgcaaaat gaataattta ataccacttg gcggatttta tcttgtttct
    10801 gtcgggctat ttttcagctt actttatcaa ctttatcaga aatcggggat ttctttccat
    10861 ttactgttta gtttgctcta ttttgttact ttttacgccg gttttccgtt ttcgttaata
    10921 atggcatttg gctttgatta cccgctgccg gagctaaaaa cacaatggca agtttttacg
    10981 gcagcaggtg ttggctattt gatttattac gttgtctatt cacgcttgtg gagtgctgtg
    11041 tcgcaaccaa ctgctcttgt tgcaaatttt caggcaaaaa cgaccgcttg tatccttgcc
    11101 gctgtggcag ttgttgccct gctatatttc ctttatttaa acggttttct gcttttcaaa
    11161 ctcgaaaaat atagccaact gtttgccaaa gatagggtca tactttcggc attaaaacga
    11221 tttttctact ttttattgcc ggcgttgtta attttttgct tcctatataa gaataaaaca
    11281 gcgtggtggg cgttactgat tgttggtggg gcattcggca tattaagcta tgtggcagtg
    11341 ggcggcacat gggcaaattt agcactagcg gttggctttt tcttattgat tggattgcag
    11401 caaggctatc tgtcgttatc aaaggtgatt gccgtaagcc taatcggcgt ggtggcgatg
    11461 ttcttcctcg ctctagcccg ttacaaactt accctttccg gtagcgagat gatttacacc
    11521 ttcttatatt taagccgaga tactttttcg ccttgggaaa atttggctcg tgtattttct
    11581 aatgaggtgg aatatcaagg tttaatgccg attgtgcggg atttctatgt atatatccca
    11641 caatctttat ggcaagaacg ccctgagatc gtctggaata cggcgaatta ttttaccaaa
    11701 gtgattttag gcaaccaatc agggttagct atttcgccta ccttactcgg ctctttctat
    11761 attatgggcg gatttagcgt tatggcgttg ggaatgggga tagtagctgc catgattaaa
    11821 gccttagata acctattcgc ttacgccaaa gcgtgcaatt ccgccttgtt gcaagcctac
    11881 tgcttcggca atttattcaa tttgatcgta ttagtgcgag agggaatcga tgcatttgtt
    11941 tcccgttttt gctttttcac gctgatattt atggcttgct atttgctggc gaaaatcctt
    12001 tcaatgggga aaaataataa tgttcgataa agtgatcatt cggggcattg cgttacaagc
    12061 ggtcaaaaat cgggaaattt ttgcaaattg gctgatgaat gaaaagcgga ttcagttcgg
    12121 aagattagtg gcaattaatg ctgagaaagt gattctgtcg gaaaaaaatc cgttgttacg
    12181 ccgagtgata gatgaagccg agttcaacta tgcagacggc atcagtgttg ttcaatcgat
    12241 tcgaaaaaaa tatccaaact ataaaataga gcgaattgcc ggagccgatt tatgggaaac
    12301 cttaatgcaa agagccggag cgttaaatgt gccggtgttt ttggtcggca gctcggcgga
    12361 taccctaacg aaggtggaag caaaattggc acaatggaag gtgaatattg tcggtaggca
    12421 gaatggctat tttaaggcgg agcaagaaca ggacgttata gagcaaatta aagcaagtgg
    12481 cgcgaagttt attagtgtgg caatgggaac tccaaaacag gaacttttta tccaacagtt
    12541 acaacaacaa tatccacaag ccttatatat gggtgttggc gggacttacg atgtgtttgc
    12601 cggtaaagtg aaacgagcac ctaaaatttg gcaaaatttg gggctggaat ggctttatcg
    12661 actattgaaa cagccaaccc gctggcaaag acaattaaat ttactaaaat atgcctatta
    12721 ctatctgaca aatcagctct aaaaaacgca ttttttgata tttattaaac gttttgaata
    12781 aaataaaacc aaacaataca tttttttaca ttttttttaa aaagtgctag acaagggaaa
    12841 gtgaaatcta taatatacgc ctccgttgcg acgcattaag ttgaattgat gtaaatcgaa
    12901 gcgttcgtag ctcagttgga tagagcgttg gcctccggag ccaaaggtcg caagttcgaa
    12961 tcttgtcgag cgcgccagat gtcaatgcgg cactatcaac acaatggtgg ctatagctca
    13021 gttggtagag ccctggattg tgattccagt tgtcgtgggt tcgaatccca ttagccaccc
    13081 cattcaatac tcttgtgagt atcagacggc gagtagcgca gcttggtagc gcaactggtt
    13141 tgggaccagt gggtcgtagg ttcaaatcct atctcgccga ccaattta
//
LOCUS       DANLRW010000074        13024 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.074, whole genome shotgun sequence.
ACCESSION   DANLRW010000074 DANLRW010000000
VERSION     DANLRW010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 13024)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13024)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13024
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.074"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            177..554
                     /locus_tag="PXA71_001752"
     CDS             177..554
                     /locus_tag="PXA71_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HDL5105844.1"
                     /translation="MEYQFTHSIHGVVAKCSMDHEAFARWLNAEITENPSQLAPIFAE
                     IEKCRAAFPNHYECVFEGREYSLYFDYDEVMAKANNLDAAFDDEEMEEGFQFYNEESI
                     AFCGLDDFEKFLKAYQHFVQTYH"
     gene            643..1230
                     /gene="yihI"
                     /locus_tag="PXA71_001753"
     CDS             643..1230
                     /gene="yihI"
                     /locus_tag="PXA71_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HDL5105845.1"
                     /translation="MSRTKKTRRITDIMPARKTDKPKQPMPKLGGGKNRKLTRYELDA
                     QAREEKRKRKHKGLPTGSRNADPAEQKKAVVKEVKDPRIGSRKKVPLMVEFVNQPEKG
                     RTIKAVPVEPIKPTLSPEQELEQLENNECLNQLLDDLEAGKTLSAEDQKFMNECLDRI
                     DELMTELGIEYEDEEGDNGDALLRQFETMDINKFR"
     gene            1244..1711
                     /locus_tag="PXA71_001754"
     CDS             1244..1711
                     /locus_tag="PXA71_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2489 domain-containing protein"
                     /protein_id="HDL5105846.1"
                     /translation="MLRIFLMVLAALILISLGGYALHLMLKVRAQKKHEQALIEQAKQ
                     AQKDRYIRILDSIEVIARAMISEQCDFSEGVLRLKPLLDVLGRKLSDYTAMWALYGVV
                     ENMPILDERKNLKRNERMKLDLEREAKEAELESDIKNECYQLLKDIEEMRKAI"
     gene            1711..3078
                     /gene="hemN"
                     /locus_tag="PXA71_001755"
     CDS             1711..3078
                     /gene="hemN"
                     /locus_tag="PXA71_001755"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDL5105847.1"
                     /translation="MSEIIWDLALIQKYNHSGPRYTSYPTALEFNENYTNEDFIRAAA
                     RYPERPLSLYVHIPFCHKLCYFCGCNKVITRHRHKVEIYLDYLEREIKTRAPLFQNRL
                     VTQIHWGGGTPTYLDEDQSARLMQMLRANFDVSDDAEISIEMDPREIELSMLDHLRAI
                     GFNRLSMGIQDFDKEVQRLVNREQDEEFIFALMKRAKELGFVSTNVDLIYGLPKQNVE
                     SFMYTLKRVVELNPDRMSVFNYAHLPSRFAAQVKIKEELLPAPETKLTILQNSIEFLG
                     KNGYKFIGMDHFAKPDDELAIAQEKGILHRNFQGYTTQEECDLLGMGVSAISLLGDTY
                     AQNRKELQQYYADVETNGIALHKGIALTQDDCIRRDVIKALICNFKLDFATIEKQYGI
                     DFKRYFAEDLAFLAPLAEDELLTMNDDSIVVSPRGRLLIRNICLCFDVYSRQLARRQQ
                     FSRII"
     gene            3152..5485
                     /gene="lptD"
                     /locus_tag="PXA71_001756"
     CDS             3152..5485
                     /gene="lptD"
                     /locus_tag="PXA71_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HDL5105848.1"
                     /translation="MKQRYSLLSLAVMAACYSNSAAADLKQQCLLGVPHFQGEVVEGD
                     QLRMPVTIEADSAVINQPRDATYTGDVTIKQGNRSIWADQVRVEQDGENARMAYLQGN
                     FNYQDNLIQATGSDATINLLSKDANLANANYQLIGRQGRGTAESGEFGNSKHTLKNAS
                     FTSCLPNDNSWQIEANEMIQHVDEEYAEMWHARFKVLGMPVFYSPYLQFPIGDRRRSG
                     LLIPSFERSSKNGWTYSQPFYWNIAPNMDSTITPTYYSRRGWQISPEFRYLTKIGQGL
                     VATEYMAKDRLSEYQPGNDDRKRYLFHWRHAMSFLTDWRFSVDYTKVSDRRYFSDFDS
                     DYGSSTDGYATQNFKLGYYQPNYNISISGKKFQTFDELDIGPYRVLPQIDFNYYKNDL
                     IKGGDFKFFAQAARFENDSKLMPKAWRFHAEPTLNFPLANRYGSLNLETKLYATYYQQ
                     TKGSESTEEIKKSVSRVLPQIKLDFKTVLESDKQLFSGYTQTLEPRVQYIYRPYKDQS
                     DIGSKAHRSVSLGYDSALLQNDYFSLFNDRRYSGLDRISSANLVTAGGTTRFFKEATG
                     EEVFNFSLGQTYYISPSKIDDTSDNSTKGHTTSWAAESNWKFHKNWNWHGSYQYDTRL
                     NQTALANMSLQYKPQSDKLIQLNYRYASKDYINQNLNTNKYGQSIKQVGGVLGWELTD
                     KVSVMTSYYHDLALKKPVEGQISLNYNTCCWAANVYVARRLVSTPVGSSDTINDFYYD
                     NKFGINFELRFGTNYSNGVTRMLKRGIIPYTEPYSIN"
     gene            complement(5627..8266)
                     /gene="ppc"
                     /locus_tag="PXA71_001757"
     CDS             complement(5627..8266)
                     /gene="ppc"
                     /locus_tag="PXA71_001757"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HDL5105849.1"
                     /translation="MNQQYSTIQHNIHMLGEFLGETIRDAQGNYILELIESIRVLSRN
                     SRAGDENAREQLLDKLANISNDDVLPVARAFSHFLNLTNIAEQHQTVSRHHIDESLGS
                     RSLDSLFLRLKSQNIPVEKVIKTVESLMIDLVLTAHPTEVTRRSLGHKHVEINKCLNL
                     LEHDDLTEAESYKIKRRLMQLIALAWHTNEIRTQRPTPVDEAKGGMAVIENSLWKAVP
                     EFCRQLNFYLEKHFGVQYPVNLAPVRFSSWMGGDRDGNPFVTAETTRRVLRMNRWKAT
                     ELFLQDIKNLAEELSITQCTPAFRAKYGNHLEPYRVLLKVLRQKLINTEIYYAELLEG
                     KISTIDESDILTSDQQLWEPLFDCYESLQACGMRIIANGALLDCLRRINCFGLGLSRL
                     DIRQESTRHEMAIAEITRYIGLGDYAHWTEDDKQAFLVRELSSRRPLIPTNWTPSPET
                     KEVLDTCKIVAEQPEGVISAYVISMAREASDVLSVHLLLKEAGCKFTIPVAPLFETLG
                     DLDHSEKVMTDLFNIGWYRGVINNYQMIMIGYSDSAKDAGMLAAGWAQYRAQEALVNL
                     CEKYNIELTLFHGRGGTIGRGGAPAHAALLSQPPRSLKNGLRVTEQGEMIRFKLGLPA
                     VAVESLELYASAILEANIFPPPEPKQQWRDVLAKASDISCQIYRDMVRGELDFVPYFR
                     SATPEQELSRLPLGSRPAKRNPKGGVESLRAIPWIFAWMQNRLMLPAWLGAGQALQQL
                     IDEGNETLLKEMCNEWPFFSTRIGMLEMVFSKADIWLAEYYDQRLVEPKLHRLGNMLR
                     TQLQADLKTVLALAHDGQLMADLPWIAESIALRNIYTDPLNLLQVELLDRIRKQGENA
                     DPVLEQALMITITGIAAGMRNTG"
     gene            8391..9359
                     /locus_tag="PXA71_001758"
     CDS             8391..9359
                     /locus_tag="PXA71_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS1 family transporter"
                     /protein_id="HDL5105850.1"
                     /translation="MCLKLLFGFDNLPVVYVLFTVIQVGLSINGFKGIKWLENVSCVF
                     LIGILAYMLYVVNTKFSVEIGERFANIEGTWGMPFWAATTAFLGIYSTMILNASDYSR
                     HVKKGTTPTATGVIYVLSILPVTLFMGLIGLLVTAATGNSDPIEVFATAMDNKFLTVI
                     TLLFIAFAQVTTNVLNNIVPPSYILMDSFKMKWSHATILVGILSICVMPWKLVTAESA
                     DGLSLFIKIYSAFLGPIFAVMVVDYYILRKRTLNVNDLYNKEGIFKGINWAAIIAIAI
                     GSFCSLIVVDLSWYVSLIPSGLSYYILMRVLKSSEAFRKGTVLEHQ"
     gene            complement(9408..9578)
                     /locus_tag="PXA71_001759"
     CDS             complement(9408..9578)
                     /locus_tag="PXA71_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-HC2 domain-containing protein"
                     /protein_id="HDL5105851.1"
                     /translation="MLKCKQITELVSLSQEQKLTLKQRVNVQVHLMLCSRCRAFSQNC
                     KTVDKLMKEFNS"
     gene            complement(9579..10160)
                     /locus_tag="PXA71_001760"
                     /pseudo
     CDS             complement(9579..10160)
                     /locus_tag="PXA71_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252416.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
     gene            complement(10379..11119)
                     /locus_tag="PXA71_001761"
     CDS             complement(10379..11119)
                     /locus_tag="PXA71_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding domain-containing protein"
                     /protein_id="HDL5105852.1"
                     /translation="MPLKLVEEHKPLLKEIQAEFANAIRHNDVKLMSGNISPQRLGVY
                     SRLVRNNTLGFIDRCYVQLPQHLSPEEWVAVKEKFIREGKAHSPFFQDIAGEFLNFCR
                     ENGCMPPHLLELMDFENAQLLAEVSMATVPSEFEWDNDTIMQFSGAAELRQYAVNFIR
                     SEFKQFNFEPTNVLIWRDTEFGIYYNRLEELDFFLLSSLQEGANSLNGLLAELSEFTE
                     QNLELKALLRQLWEKWVEAEVIYPVYPE"
     gene            complement(11109..12032)
                     /locus_tag="PXA71_001762"
     CDS             complement(11109..12032)
                     /locus_tag="PXA71_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF692 family protein"
                     /protein_id="HDL5105853.1"
                     /translation="MLKFTGAGLGYRRDLADGFLSLTDNNIINFMEVAPENWLKMGGQ
                     ARYNFDKVAEKIPVIIHGLSLSLGGQAPLDMTLLKGIKNMQQQYNSFFFSDHLSYCEC
                     EGHLYDLLPMPFTDEAVHHVANRIKQVQDYLGMQISLENTSYYLHSPTSTMNEVEFLN
                     AIAQEADCGIHLDVNNIYVNGVNHGLLDPFVFIDQVDKSRVNYIHIAGHDEDHGAAED
                     VKMTEGESFNMVKGELRHLPTLLVDTHGEAVQKTVWDLLEYTYEHLPHIPPTLLERDF
                     NFPPFQELISEVQHIMSLQKKYAKTRLKNAA"
     gene            complement(12133..12420)
                     /locus_tag="PXA71_001763"
     CDS             complement(12133..12420)
                     /locus_tag="PXA71_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105854.1"
                     /translation="MKKATLMALAGALTMATATVNAETKSVKADACMEVKDGKCVKTK
                     ATEGKCGEGKCGATSSEPKATEGKCGEGKCGATAPKAAEGKCGEGKCGASK"
     gene            complement(12446..12886)
                     /locus_tag="PXA71_001764"
     CDS             complement(12446..12886)
                     /locus_tag="PXA71_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDL5105855.1"
                     /translation="MTACKNGLGFLVLRLFLAYEFFEAGLSKLNGENWFASIQESFPF
                     PFNVLPADLSWAIASGAEILLPILLTLGLFTRFSALGLMILTAVAWYAVHAGNGYNVC
                     NNGYKMALIYLVMLVPLLLQGAGSLSLDFLLQKKSPTKRWLKFL"
BASE COUNT         3878 a         2551 c         2738 g         3857 t
ORIGIN      
        1 gtagttcctt tttgatgtat caatactaaa aataacctgt attattctag cagatttctg
       61 ggtaatcgag gagttgataa catttaaaaa ttagcgtttt gcaaaatttt ccaaaaaaag
      121 accgcttgtt aggctataat agccaaccaa acagaccaat tcaaaggaga atcggtatgg
      181 aatatcaatt tacccatagt attcacgggg tggtggcaaa atgttcgatg gatcacgagg
      241 cgtttgctcg ttggttgaat gccgaaataa cggaaaatcc tagccagtta gcccctattt
      301 tcgctgaaat agagaagtgt cgagccgcat ttccgaatca ttatgaatgt gtgtttgaag
      361 ggcgggagta tagtctctat tttgattatg atgaagtgat ggcaaaagca aacaatttag
      421 atgctgcttt tgatgatgag gaaatggaag aaggctttca attttacaat gaagagagca
      481 tcgcattttg tggcttagat gactttgaga aatttttgaa agcctaccaa cattttgtgc
      541 aaacttatca ttgattgaaa tgattaattg aaaccaaagc tattaaggga atctaattcc
      601 ttgtagaata gccgtttata gcaattttaa gatattaaat ttatgagtcg tactaaaaaa
      661 acacgtcgta ttaccgacat tatgccggca agaaagaccg ataaacctaa acagcccatg
      721 cctaaattag gtggggggaa aaatcgcaaa ctgacccgtt atgagttaga tgctcaagcc
      781 cgtgaggaaa aacgtaagcg taaacataaa ggcttgccga caggctcacg caatgctgat
      841 ccggcagagc agaaaaaagc agtggtgaaa gaggtgaaag atccgcgtat cggtagccgt
      901 aaaaaagtgc cgttaatggt ggaatttgtg aaccagccgg aaaaagggcg gacgattaag
      961 gctgtgccgg ttgagccaat caaaccaacg ctttcaccgg aacaagagct ggagcagtta
     1021 gaaaataacg aatgtttaaa tcagttgtta gatgatttgg aggcgggcaa aaccttatcc
     1081 gcagaagatc agaaatttat gaatgaatgt ttagatcgca ttgatgaatt aatgactgag
     1141 cttggcatcg aatatgaaga tgaagagggc gataatggcg atgcgttatt acgccaattt
     1201 gaaacgatgg atattaataa attccgctag gtagccgatt atgatgctaa gaatattcct
     1261 gatggtgctt gccgctttga ttttaatttc gctgggcggg tatgcactgc acttaatgct
     1321 gaaagtgcga gctcagaaaa agcacgaaca agcactgatt gaacaggcaa agcaagcaca
     1381 aaaagatcgt tatattcgga ttttagacag cattgaagtt attgctcggg caatgatttc
     1441 agaacagtgc gatttttcgg aaggcgtttt acgtttaaaa ccgctattag atgttctcgg
     1501 cagaaaatta agcgactata cggcgatgtg ggcgttgtat ggcgtggtag aaaatatgcc
     1561 gattttagat gaacgcaaaa atttaaaacg taacgaaaga atgaagttgg atttagagcg
     1621 ggaagcaaaa gaagcggagc ttgaatcaga catcaaaaat gagtgttacc aattattaaa
     1681 agatattgaa gaaatgagaa aggcaatcta atgtcagaaa ttatttggga tttagccctt
     1741 attcaaaaat ataaccattc agggcctcgt tatacctctt acccaacagc gttggagttt
     1801 aacgaaaatt acaccaatga agattttatt cgtgctgcag ctcgttaccc tgagcgtccg
     1861 ctttcgcttt atgtgcatat tccgttttgc cataaactgt gctatttctg tggctgtaat
     1921 aaagtgatta ctcgtcatcg ccataaagtt gaaatttatt tagattattt agagcgtgaa
     1981 attaaaactc gcgcacctct gtttcaaaat cgtttagtga cccaaataca ctggggtggc
     2041 ggtacgccga cttatttaga cgaagatcaa tcggcacgtt taatgcaaat gctacgagcc
     2101 aattttgatg tgagcgatga tgcggaaatc agcattgaaa tggatccgcg tgaaatcgaa
     2161 ttaagtatgt tggatcacct gcgtgctatc ggttttaacc gtctgagtat gggtattcag
     2221 gatttcgata aagaagtgca acgtttggtg aatcgtgagc aagatgaaga gtttattttt
     2281 gccttgatga aacgggcaaa agaacttggt tttgtttcaa ctaatgtgga tttgatttac
     2341 ggcttgccaa aacagaatgt ggaaagcttt atgtacacct taaaacgtgt ggtagagcta
     2401 aaccctgatc gtatgagcgt atttaactat gcccacttgc caagccgttt tgctgcacaa
     2461 gtgaaaatta aagaagagtt gttgccggct ccggaaacca aattgacgat tttgcaaaat
     2521 tccatcgaat ttttaggcaa aaacggttat aagtttatcg gtatggatca ctttgctaaa
     2581 cctgatgatg agttagctat tgcacaagaa aaaggcattt tacaccgtaa cttccaaggc
     2641 tataccactc aagaagagtg tgatttattg ggaatgggcg tatcggcaat cagcttactc
     2701 ggcgatactt acgcccaaaa ccgcaaagaa ttacaacaat actatgctga tgttgaaacc
     2761 aacggtattg cgttgcataa aggcattgcg ttaacccaag atgattgcat tcgccgtgat
     2821 gtgataaaag ccttgatttg taatttcaaa ttagattttg ccaccattga aaagcaatat
     2881 ggtattgatt ttaaacgtta ttttgccgaa gatttagctt tcttagcgcc gttggcggaa
     2941 gatgaattat taacgatgaa tgacgacagc attgtggttt ccccacgagg gcgtttattg
     3001 atccgtaata tttgcttatg ctttgatgtc tattcaagac aattagcgag aagacagcag
     3061 ttttcccgta ttatttaatg agcaagcggt cgattttggt aaaaattttg caaaaacaga
     3121 ccgcttgttc ccggcttata aaggaaaaat gatgaaacag cgttatagct tactttctct
     3181 tgctgtgatg gcagcttgtt atagcaacag tgccgcagct gatttaaagc aacaatgttt
     3241 acttggcgtg ccgcattttc agggcgaagt ggtagagggc gatcaactta gaatgcctgt
     3301 taccattgag gctgacagtg cggtcattaa ccagcctcgt gatgccacct acaccggtga
     3361 tgtaacgatc aaacaaggta accgttcgat ttgggcggat caggtgcggg ttgagcaaga
     3421 tggcgaaaat gcccgaatgg cgtatttgca gggtaatttt aactaccaag ataatttgat
     3481 tcaggcaacc ggttcagatg cgaccatcaa tctgctttcc aaagatgcga atttagctaa
     3541 tgctaattac caattaattg gcagacaagg gcgtggcacg gcagaatccg gtgaattcgg
     3601 caacagcaaa cacacgctga aaaatgccag tttcacttcg tgcttaccga atgataattc
     3661 gtggcaaatt gaagcgaatg aaatgattca gcacgttgat gaagaatatg cggaaatgtg
     3721 gcacgcccgt tttaaagtgc tgggaatgcc ggtattttat tcgccttact tacaatttcc
     3781 gattggcgac cgccgccgta gtgggttatt aattccaagt tttgagcgtt caagcaaaaa
     3841 cggctggaca tattcgcaac cgttttattg gaatatcgca ccgaatatgg actcgaccat
     3901 cactccaact tactattcac gccgtggttg gcaaatcagc ccggaatttc gttatttaac
     3961 gaaaatcggg caaggcttag tggcaaccga atatatggcg aaagatcgtt taagcgagta
     4021 ccaaccggga aatgatgatc gtaaacgcta tttattccac tggcgtcacg caatgagttt
     4081 tttaaccgat tggcgtttct cggtcgatta caccaaagtg agcgacagac gttatttctc
     4141 tgattttgat tcggattatg gtagcagtac tgatggctat gcgacgcaga attttaaatt
     4201 aggctactat cagccgaatt ataatatctc aatttcaggt aaaaaattcc aaaccttcga
     4261 tgagttggat atcgggcctt atcgcgttct gccacaaatt gattttaact attataaaaa
     4321 cgatctaatt aaaggcggag atttcaaatt ctttgcccaa gcagcccgtt ttgaaaatga
     4381 tagtaaatta atgccaaaag cgtggcgttt ccacgctgag ccaacactga atttcccatt
     4441 agcgaaccgc tatggtagct taaatttaga aaccaagctc tatgcaacct actatcaaca
     4501 aacgaaaggt agtgagagta cggaagaaat taagaaaagt gtaagtcgtg tactgccaca
     4561 gattaagctc gattttaaaa ccgtgttgga atccgataaa cagcttttct ctggctatac
     4621 tcaaacgctt gagcctcggg tgcaatatat ttatcgccca tataaggatc aaagcgatat
     4681 tggctcgaaa gcacatcgaa gtgtgagctt aggctatgac tctgcattat tgcaaaacga
     4741 ctatttctca ctgtttaatg acagacgtta tagcggttta gatcgtattt cgtcagcaaa
     4801 tttagtcacc gcaggtggca caacccgttt ctttaaagag gcaaccggtg aagaggtgtt
     4861 taatttcagc ttaggacaaa cttattatat aagcccgtct aaaattgatg atacctcaga
     4921 taacagcact aaaggtcata cgacttcatg ggcagcggaa tctaactgga aattccataa
     4981 gaattggaat tggcatggta gctatcaata tgatactcgt ttaaaccaaa cggcgttagc
     5041 gaatatgtca ttgcaataca aaccacagtc agacaaattg attcagctta attaccgcta
     5101 tgcaagtaaa gattacatca atcaaaactt gaacacgaat aagtatgggc aatccattaa
     5161 acaagtgggc ggtgtgctag gttgggaatt aaccgataaa gtgtcggtaa tgaccagtta
     5221 ttaccacgac cttgcattga aaaaaccggt ggaagggcaa atttcgctta actacaacac
     5281 ttgctgttgg gcggcaaatg tgtatgtggc tcgtcgctta gtttcaacgc cggtaggttc
     5341 atctgatacg atcaatgatt tctactatga caataaattc ggcattaact ttgagctacg
     5401 ctttggcaca aactacagca atggtgtaac ccgtatgcta aaacgaggta ttattcctta
     5461 caccgagccg tatagcatta attaacaaag taaaaacaaa taagtaaaaa tacaaatcgg
     5521 ggcgaaaaat atttgccccg atttttttat atttggctga taagcggtta aattctgttg
     5581 gaattttgca aatcttccgc taaattcaac cgcttgccat cgaaacttaa cctgtatttc
     5641 gcatacctgc ggcaatacct gtgatggtga tcatcaatgc ttgctctagt acaggatcag
     5701 cattttcacc ttgtttgcga atcctatcta acaattctac ctgaagtaga ttgagcggat
     5761 cggtataaat attgcgtagt gcaatcgatt ctgcgatcca aggtaaatcg gccattaatt
     5821 gtccatcgtg agccagtgca agtacggttt taagatcagc ctgtagttgc gtacgcaaca
     5881 tattgcctaa acggtgtagt tttggctcga ctaggcgttg gtcgtaatat tccgccagcc
     5941 aaatatcagc tttactaaat accatttcca gcattccgat acgggtcgag aaaaacggcc
     6001 attcgttaca catttctttt agtaaggttt cattaccttc atcaatcaac tgttgcaatg
     6061 cttgccctgc acctaaccaa gcaggtagca ttaagcggtt ttgcatccaa gcgaaaatcc
     6121 aaggaattgc acgcaaactc tccactccgc cttttggatt acgttttgca gggcgtgagc
     6181 caagcggcag acgggaaagt tcttgctctg gtgtagcaga gcggaaatac ggtacgaagt
     6241 ctagctcgcc acgcaccata tcacggtaaa tttggcaaga aatatcggag gcttttgcta
     6301 gcacatctcg ccattgctgc tttggctccg gtggtgggaa aatattcgct tctaaaatcg
     6361 cactggcata gagttctaaa ctttcaactg ccacggcagg taagcctaat ttaaagcgga
     6421 tcatttctcc ttgttcggtc actcgtaagc catttttgag tgagcgaggt ggctgagaaa
     6481 gtaaggctgc gtgagccggt gcgccaccac gcccgatagt accaccacga ccgtggaata
     6541 aggttaattc aatattatat ttttcacata aattaaccag agcttcttgc gcccgatatt
     6601 gcgcccagcc ggcagcaagc attccggcat ctttggcgga atcagagtag ccgatcataa
     6661 tcatttggta attgttgatg acgccacgat accagccgat attaaataaa tcggtcatca
     6721 ctttttcact atgatctaaa tcgcctagcg tttcaaataa tggggcaacc ggaatagtaa
     6781 atttgcaccc cgcctctttg agtaaaaggt gaaccgagag tacatcagag gcctctcttg
     6841 ccattgaaat gacataggct gaaatgacac cttcaggttg ctcggcaaca attttacaag
     6901 tgtctaacac ttctttagtt tcagggcttg gagtccagtt ggttggaatc aatgggcggc
     6961 gagaactgag ttcacgcact aagaatgcct gtttatcatc ttccgtccag tgagcataat
     7021 cgcctaagcc gatatagcgg gtaatttctg caatcgccat ttcgtggcgg gtactttctt
     7081 ggcgaatatc taagcgtgat aaacctaaac caaaacagtt tatacgacgt aagcaatcta
     7141 gtaatgcacc atttgcaata attcgcatac cacaggcttg taatgactca tagcaatcaa
     7201 aaagcggttc ccacaattgc tgatctgaag ttaaaatgtc actttcatca atagttgaaa
     7261 ttttaccttc caataattcc gcatagtaaa tttcggtatt aattaatttc tggcgtaata
     7321 cttttagtaa tacgcgatat ggctctaaat ggttgccata tttagcacga aatgcagggg
     7381 tacactgtgt aatcgataat tcttcagcaa gatttttaat atcttgtaag aacaattccg
     7441 tggctttcca acggttcatt cttaatacac ggcgagttgt ttctgccgtg acgaacgggt
     7501 taccgtcacg gtctccgccc atccaagaag aaaaacggac aggggctaaa tttaccggat
     7561 attgcacacc aaagtgtttt tctaaataga agttaagctg acggcaaaat tccggcacgg
     7621 ctttccataa actattttca atgactgcca taccgccttt ggcttcatca acaggggttg
     7681 ggcgttgggt tctgatttca ttagtatgcc aagcaagggc aatcagttgc attaaacggc
     7741 gcttgatttt atagctttct gcctcagtta aatcatcatg ttccaacaaa ttcaaacatt
     7801 tattgatttc aacgtgttta tgccccagcg aacggcgggt tacttccgtt gggtgagctg
     7861 ttagcactaa atcaatcatt aggctttcca cggttttaat cactttttca acggggatat
     7921 tttgtgattt tagacgaagg aacagagagt ctaatgagcg actaccaagt gattcatcaa
     7981 tatgatggcg agaaacagtt tgatgttgtt cagcaatatt tgttagattt agaaaatggc
     8041 taaatgcacg tgcaacgggt aagacatcat cgttagaaat attggctaat ttatctaata
     8101 gctgttcacg ggcgttttca tcgccggcac gagaattgcg agataacaca cgaatgcttt
     8161 cgatgagttc tagaatgtaa tttccttgcg catcacgaat cgtttctccc aaaaattcac
     8221 ctaacatatg gatattatgc tgaattgttg aatattgctg gttcataaaa aattcctatg
     8281 gtaaacataa attaaattag gtctaaatat gccgaaaatc gctgaaaata gcaaatagat
     8341 ttaatttaat ttttgaatta aatgataaaa cgcaaaaaat agctgtcaat atgtgtttaa
     8401 aactgttgtt cggttttgat aacttgcctg ttgtttatgt gctattcact gttattcaag
     8461 ttggcttatc cattaatggt tttaaaggta ttaaatggtt ggaaaatgtt tcttgtgtgt
     8521 tcctcatcgg tattcttgct tatatgcttt atgttgtgaa tacaaaattc tctgtagaaa
     8581 taggcgagcg ctttgccaat attgaaggca cttggggaat gccattctgg gctgcaacta
     8641 cagcattctt gggtatttat tcaacaatga ttttaaatgc ttccgattat tctcgccacg
     8701 ttaaaaaagg aacaacccca acagcaacag gtgtgattta tgtattatca atcctccctg
     8761 taaccttatt tatgggttta atagggttgt tagttacggc agctacaggc aatagtgacc
     8821 caattgaagt atttgcaact gcaatggata ataaattttt aacagtaata acgttattat
     8881 tcattgcttt tgcacaggtt acgacaaacg tgttgaataa tattgttccg ccatcttaca
     8941 ttttaatgga ttcatttaaa atgaaatggt cgcatgccac cattttagtg ggcattcttt
     9001 ctatatgtgt aatgccttgg aaattggtaa ctgctgaatc agcagatgga ttatctttgt
     9061 ttattaaaat ttactcggca ttcttaggcc ctatttttgc ggtaatggtc gtcgattact
     9121 acatcttaag aaaacgtact ttaaacgtaa atgacttata taataaagaa ggtattttca
     9181 aagggattaa ctgggcagca attattgcga ttgctatcgg ttcgttttgc tcactgattg
     9241 tggtggatct ctcttggtat gtcagtttaa ttccatcagg cttgagctac tatattttga
     9301 tgagggtgtt aaaaagttcc gaagctttcc gtaaagggac agtgctagaa catcaataag
     9361 atgacaagcg gtaaaattta ttaaaaattt taccgcttgc ttttacgcta agagttaaat
     9421 tctttcatta gcttatctac ggttttgcag ttttggctaa aggctctgca acgagaacaa
     9481 agcattaaat gaacttgcac attaacacgt tgttttaatg tcagtttttg ttcttgggac
     9541 agagaaacta attcggtaat ttgcttacat tttaacattt aacctccaaa ccatttttga
     9601 cttaaacaga cctgtaactg caatcttgcc cgatacagta aggtatgcac atttgctggt
     9661 gaaatctcac attctgcgca aatttcttcg gtttccattt ccaaatggga acgcatcata
     9721 aacacccttg cttgatttgc cggcagatta tttaggcaaa attcaaatac ttgccagaat
     9781 tgagcggaat aggtatggct ttcggtgttc ttccactcat tagattgata agcatcttta
     9841 tcccaaccgc cattttcgtt aaacaattta tcggcaagat cgtgatcgtc ttcttccatc
     9901 agctcagata ctgccaccaa tttgcctttg gctttcacta aatctacgat cttgtttttt
     9961 aaaattgcaa aaatctacgt ttttaacgca ctttcacctt tgaagctgtc ggcatattta
    10021 taagcgctga caaacgcctc ttgcaccaca tcttcggcaa gttcgttatt ttttaactgt
    10081 aaaaaggcaa acttcaccat ttgcagacga atatcttcta gctgcgaggg ggaaatttgc
    10141 cgtaaagccg gttggctcat tgcgtgatcc tttggtaaaa aattgagaga aactaaccgc
    10201 ttgtatccta tttcataagg ttttacccaa cttaggggat attggtatga agtattttta
    10261 aacctaacat actaatcgta ggggcgggtc ctgtgcccgc ccgttatctt aatattagtc
    10321 gggcgggcac aggacccgcc cctactatgt atgtcagtac atatcacata ccttatcctc
    10381 attcaggata gacaggataa atcacctctg cttcaaccca tttttcccaa agttggcgta
    10441 acaaggcttt tagctccaga ttttgctcgg taaactcgct gagttctgct agtaagccat
    10501 tcagggaatt tgccccctct tgcaacgagc taagcaggaa gaaatccagc tcttccaagc
    10561 ggttgtaata gatgccaaat tccgtatctc gccaaatcag tacgttggtc ggctcaaagt
    10621 taaactgttt gaactcgcta cggataaagt ttaccgcata ttgacgcagc tcagctgcac
    10681 cagaaaactg cattatagta tcgttatccc attcaaattc tgatggtacg gttgccattg
    10741 atacctcagc cagtaattga gcattttcaa agtccatcaa ctcaagcaag tgtggtggca
    10801 tacagccatt ttctcggcaa aaattgagaa attcgccagc aatatcttgg aaaaagggcg
    10861 aatgagcctt accttctcgt ataaattttt ctttaacggc aacccattct tcaggactta
    10921 gatgttgagg gagctgtaca taacaacggt cgataaaacc gagagtatta ttgcgaacca
    10981 agcgagaata gacgccaagc cgctgtggag agatattacc actcatcagc tttacatcgt
    11041 tatggcgaat tgcattcgca aactcggctt gaatctcttt gagtaacggt ttgtgttctt
    11101 caacgagttt aagcggcatt ttttagcctc gtttttgcat attttttctg taagctcata
    11161 atgtgctgta cttcactaat cagttcttga aacggtggga agttgaaatc ccgttctaac
    11221 agtgttggtg gaatatgcgg taggtgttca taggtgtact ctagtaaatc ccacacagtt
    11281 ttttgtacag cttctccgtg tgtatcgacc agtaaagttg gcagatgacg tagttcgcct
    11341 tttaccatat taaatgattc accctcggtc attttaacgt cttccgccgc accgtgatct
    11401 tcatcgtggc ctgcaatatg aatataattg acacgagatt tatccacttg atcaataaat
    11461 acaaatggat caagcaagcc gtgattgaca ccattaacat aaatattatt cacatcaagg
    11521 tgaatgccac aatccgcttc ttgggcaatt gcattgagaa actctacctc attcatcgta
    11581 ctggttggtg aatgcagata gtaggacgta ttttcaaggg aaatttgcat acctaaataa
    11641 tcttgcactt gtttaatgcg atttgccacg tgatgtacgg cttcatcggt aaacggcatt
    11701 ggcagcaggt catataaatg cccttcacat tcgcaatagc ttaaatgatc agagaagaaa
    11761 aaggagttat actgctgctg catattcttg atccctttta gtagcgtcat atctaaaggc
    11821 gcttgcccgc cgagagagag ggataaaccg tgaataataa cagggatttt ttcagcgact
    11881 ttatcgaagt tataccgagc ctgaccgccc attttcagcc agttttctgg ggctacttcc
    11941 ataaaattaa ttatattgtt atctgtgaga gataaaaatc cgtccgctag gtcacggcga
    12001 tagcctagac cggcaccagt aaattttaac atcgtcttgt tcctttaatt tgcaaaaaat
    12061 cagcggaatt taaccgcttg tagattgtgt ttataagagg ttaggtgcgt ttagaaaacg
    12121 caccttcgct acttacttag aagctccaca cttgccttca ccgcatttac cttctgccgc
    12181 ttttggtgcc gttgctccac atttcccttc gccgcattta ccttcggttg cttttggctc
    12241 agaagaggtt gctccacatt tgccttcgcc acatttacct tctgtagctt tggtttttac
    12301 acatttgcca tcttttactt ccatacaagc atctgctttc actgatttag tttcagcgtt
    12361 tacagtcgcg gttgccatag ttaatgcacc agctaatgcc attaaagttg cttttttcat
    12421 taaaaattct ccataaatta agggattaaa ggaatttcaa ccagcgtttg gttggggatt
    12481 ttttctgtaa cagaaaatcg agagagagcg agccagcacc ttgtaataaa agtggtacta
    12541 acatcactaa ataaatgagt gccattttat agccattgtt gcagacattg tagccattgc
    12601 cagcgtgaac agcataccac gctaccgctg ttaagatcat taatcctaac gcactgaagc
    12661 gggtgaacag acccaaagtg agtaaaatag gcagtaagat ttccgctccg ctagcaatag
    12721 cccagctaag atcggctggt agtacgttaa aggggaatgg gaagctctct tgaattgagg
    12781 caaaccaatt ttcaccgttt agttttgata accctgcttc aaaaaattca taagcaagaa
    12841 atagacgtaa tacaagaaag cccaagccgt ttttacaagc tgtcattgag caagctgact
    12901 gagttgaaaa tgatgacgaa aatgatgaca taaaaatgct cctaactaaa aatgtgatta
    12961 ttagacagaa taagtatacg tttattacaa aaaatgtgtg aaaaattata acctattttt
    13021 atag
//
LOCUS       DANLRW010000075        12701 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.075, whole genome shotgun sequence.
ACCESSION   DANLRW010000075 DANLRW010000000
VERSION     DANLRW010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12701
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.075"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            95..1549
                     /locus_tag="PXA71_001765"
     CDS             95..1549
                     /locus_tag="PXA71_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5105856.1"
                     /translation="MKKIVSTLLILTSNLAFAETTPAQLQEKMDNQRMQKNLHTLEKP
                     EPQAKPQAVNAQAHRQSISISSQQLLQQPELLNSAMLTALVTNHTENVQFLLPIYQQL
                     PASKQNSEVVQWAEAVNAKAKQNYSEAIKGYRQLLAKYPENQPIRMQLAVALFENREN
                     EAAEAQFYKLQADKLPQEIANAVNSYLEAIGKQDQWSFQGGLTYLNDPNINNAPNAGT
                     TYGNWTAPKKESAQGVGFHFEADKKWSWGNGFFHEFRLNGNGKYYWNNKKYNEYSLRE
                     SLGLGYQNAKQKITLLPFFEQMWYAGGSSQTESTKRYSNAGGVNARWQYWITPQWQSA
                     ISYEYAEQRYTRRQHLDGNYHFIAPSLYFYPNSRQYWFVGANFNRTSPRDLDDSFIRR
                     GVSIGWGQEWKNGLSTQLSASYARKQYRAPMPIFQITQRNSEYGVQASIWHRALHFKG
                     ITPRLTWQYNKVKSNHSFYSYDKNRVYIEFSHTF"
     gene            complement(1597..4194)
                     /gene="mutS"
                     /locus_tag="PXA71_001766"
     CDS             complement(1597..4194)
                     /gene="mutS"
                     /locus_tag="PXA71_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDL5105857.1"
                     /translation="MTQDFSTHTPMMQQYLQLKAQNPDILLFYRMGDFYELFYDDAKR
                     AAALLDISLTKRGQSAGEPIPMAGVPYHAVEGYLAKLVALGESVAICEQIGDPATSKG
                     PVERKVVRIVTPGTVSDEALLPERQDNLVAAVYEEKGTFAIATLDMTSGRFLISELAS
                     KEALSAELQRVQPAEILYAEDFSAASILTNYKGLRRRPVWEFELVTAIQLLNRQFGTQ
                     TLAGFGVEKAVVALCAAGCVLHYAQETQRTALPHINAIHLAQHSDTILLDAATRRNLE
                     LTQNLAGGTENTLAAVLDKCVTPMGSRLLKRWIHQPIRDCGKLQARQKAITALIQYER
                     MSDLQPLLQQVGDMERILARVALRTARPRDLTRLRTALAQLPEIAKNSQNLTASIDQL
                     LAQLADFSPLHDLLERAIIENPPQLIRDGGVIAEGYNAELDEWRQLSDGATQYLENLE
                     IRERESTGIDSLKIGFNAVHGYYIQISQGQAHKAPIHYVRRQTLKNAERYIIPELKTY
                     EDKVLKAKGASLALEKQLYDELFDVLMPRLGELQLAAMMLSELDVLTNLAERADSLGY
                     VCPSFSPMRMVNIKGGRHPVVEQVLTEPFIANPVFLNSQRHLLIVTGPNMGGKSTYMR
                     QIALITLMAYIGSFVPAESAEIGPIDRIFTRIGASDDLASGRSTFMVEMTEMANILHQ
                     ATENSLVLIDEIGRGTSTYDGLSLAWACAEWLAKKTQSLTLFATHYFELTGLPNQLKG
                     VANVHLDAREHQDSIVFMHSVQEGAASKSYGLAVAALAGVPKQVIQLAKQRLAHLEEI
                     SHQTKQANEHPQADLLFSDGFDLQKNEAIQPLVVENEVEKALKALQPDELTPRQALDE
                     LYRLKKLLG"
     gene            4344..4907
                     /locus_tag="PXA71_001767"
     CDS             4344..4907
                     /locus_tag="PXA71_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5358 domain-containing protein"
                     /protein_id="HDL5105858.1"
                     /translation="MLRKIVLLSTGLLLAACSSNEPQQPEAFPGEFANADYVLSEENA
                     QKWVIASEQAKQCIYPNLTRIQQEHFSKEDSYIFSQYVFFYPLEEIIGEQYVKIIQND
                     EKSMGYAQYLFKKLKNNEAVEALPKKQCATLRTNAKNDLAVVKGQYQSGMIEETNSQE
                     GKSGDKVATNDNKFFFDIIKWGSMLLL"
     gene            5081..5710
                     /locus_tag="PXA71_001768"
     CDS             5081..5710
                     /locus_tag="PXA71_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HDL5105859.1"
                     /translation="MAVSATSFAQTTQPTAAEQMNAVKASVAEKATVAKEATKEKAAE
                     LKAGSAEKMAIAKAKTESFKDSAKNKMDAVKATTAEKTDVIKAKAASASDTMKVKAQE
                     AKAATAEKAATAHETLNSAKTATAEKAASMKAAATEKMSAVKKSQKVNINTANEEQLQ
                     SLTGIGEAKAKAIVEYRKKHGKIKNAAELANIPGIGDATIEKVAPYLTF"
     gene            5858..6487
                     /locus_tag="PXA71_001769"
     CDS             5858..6487
                     /locus_tag="PXA71_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007526112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5105860.1"
                     /translation="MALDFNSVGLDSVEAKGGYGIGLQIGQQLLGSGMDVNAETVARG
                     IYDVLNNNEPAIDINEVTAALQELGQRAEAAQAEAFKAIDAENKAFLEENKKANGVIV
                     TDSGLQYEILTEGTGEKPTATSTVRVHYTGSLIDGTVFDSSVKRGQPAEFPVNGVIRG
                     WTEALQLMPVGSKWRLTIPQELAYGERGAEASIPPFATLVFEVELLDIL"
     gene            6553..7068
                     /locus_tag="PXA71_001770"
     CDS             6553..7068
                     /locus_tag="PXA71_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein disulfide oxidoreductase"
                     /protein_id="HDL5105861.1"
                     /translation="MQKKSLISRLLKNIFLYGSLFIIISLVVDWYRSPSAPAQFEQTV
                     HYDIQHQPKVIAQLSHEKPMLLYFWGSWCHYCQVVSPNIQQLANDGTEVLGVALKSGD
                     ENDVQAYLNENGYTFATLNDPSGDFSRGWNIQATPTILIIKDGKIAHHTTGYTSYLSL
                     KFRLWLADVLY"
     gene            complement(7116..8046)
                     /locus_tag="PXA71_001771"
                     /pseudo
     CDS             complement(7116..8046)
                     /locus_tag="PXA71_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433453.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(8105..8755)
                     /locus_tag="PXA71_001772"
     CDS             complement(8105..8755)
                     /locus_tag="PXA71_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595-like element ISMha4 family transposase"
                     /protein_id="HDL5105862.1"
                     /translation="MRKSRLSQYKQNKLIEQFVAGVTARTASELVNVNKNTAAYYFHR
                     LRLLIYQHSPHLEMFEGEIEVDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVV
                     VPNTQFATLLPIIREKVKPDSIVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHIN
                     GIENFGSQAKRHLRKFNGIPKVHFELYLKECEWRFNHSDLKSQISFLKQLVKGSLG"
     gene            9084..10442
                     /gene="mnmE"
                     /locus_tag="PXA71_001773"
     CDS             9084..10442
                     /gene="mnmE"
                     /locus_tag="PXA71_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDL5105863.1"
                     /translation="MKDTIVAQATPIGRGGVGILRVSGPLAETVAQAVLGKTLPPRIA
                     NYLPFKDEDGTVLDQGIALFFKAPNSFTGEDVLELQGHGGQVILDLLLKRILQVKGLR
                     IARAGEFSEQAFLNDKLDLAQAEAIADLIDATSEQAARSALKSLQGEFSNKINALVDS
                     VIYLRTYVEAAIDFPDEEIDFLADGKIEAKLNEIIAQLDGVRREAKQGSILREGMKVV
                     IAGRPNAGKSSLLNALAGREAAIVTNIAGTTRDVLREHIHIDGMPLHIIDTAGLRDAS
                     DEVERIGIQRAWEEIAQADHVLLMIDSTEQQADQFRQEWAEFLAKLPANMPVTVIRNK
                     VDLSGEQEGLIQVDDFTMIRLSAQTKVGVDLLREHLKKSMGYQSSTEGGFLARRRHLQ
                     ALETAAEHLERGHIQLTQFLAGELLAEELRMVQNALSEITGQFTSDDLLGNIFSSFCI
                     GK"
     gene            10443..11708
                     /gene="tilS"
                     /locus_tag="PXA71_001774"
     CDS             10443..11708
                     /gene="tilS"
                     /locus_tag="PXA71_001774"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDL5105864.1"
                     /translation="MALFNRFQTQCATHLPNQTAFLIGLSGGVDSVVLLHLFARTSFH
                     VRAIYVHHGLSPNADDWAAFCEQYCKRLNIPFILQKVRVDSSNGVENGAREARYQAIQ
                     QQLKPNEVFATAHHLDDQAETFLLALKRGSGVKGLSAMQAVTFLQNFTVFRPLLTFTK
                     SDLMGYAVQHQLGWIEDESNADNRYDRNFLRNSILPLLNQRWQHFSQMVARSAQHCAE
                     QQALIEELLSNELKSRTGEKQQLNINGFGQFSLAKQQQLSRLWLEQNGVRMPSQAQLQ
                     AVISELIFAKADKNPQVKVGENIIRRYQQAIYVTEEIADIPPFEVVLPTETKVELPYQ
                     LGTIIRQQQEIICKKNGKNHRLQLPQELAQSTISIKIGQLGKVKCYGKAQREEMKKIW
                     QNHGIPVWERNRTPLIFWQDELVGLLPIL"
     gene            complement(11698..12591)
                     /gene="xerD"
                     /locus_tag="PXA71_001775"
     CDS             complement(11698..12591)
                     /gene="xerD"
                     /locus_tag="PXA71_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HDL5105865.1"
                     /translation="MAELDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPK
                     AFLSLDHIDLQGFLGERLEQGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSP
                     KRGASLPKSLSEDQVMDLLDAPNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNIS
                     LKQGVVRIIGKGDKERLVPLGEEANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMT
                     RQTFWHRIKHYAVLAGIDADKLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQ
                     IYTQVAKARLKSLHQQFHPRG"
BASE COUNT         3818 a         2949 c         2694 g         3240 t
ORIGIN      
        1 ttaacttaat gaaaaatata gcaaaacaac ctcaaaactc ttcactaaag gctattgaaa
       61 aatagccttt tctattcaaa taaaagatag ctttatgaaa aaaatagtct caacgctttt
      121 aatccttacc tcaaacctgg catttgcgga aaccacaccg gctcaacttc aagaaaaaat
      181 ggataaccag cgaatgcaga aaaacctaca tacattagaa aagcctgaac ctcaagccaa
      241 accacaagcg gttaatgcac aggctcaccg gcaatcgatc tctatttcaa gccaacagct
      301 gcttcaacag cctgagttgc tcaactcggc aatgctaact gcgttggtca ctaaccacac
      361 tgagaatgtt caattcttac tgcctattta tcaacaatta cccgccagta aacaaaacag
      421 cgaagttgta caatgggcgg aggcagttaa tgccaaagca aaacaaaatt attcagaggc
      481 aataaaaggc taccgtcagc tactggcaaa ataccctgaa aatcagccaa tccgtatgca
      541 attagcggtt gcattgtttg aaaatcggga aaatgaagcc gcagaggctc aattttataa
      601 gttacaagcg gacaaattac cgcaagaaat tgcaaatgcg gtcaatagct atttggaggc
      661 gattggcaag caagatcaat ggagttttca aggcggctta acctatttga atgacccgaa
      721 tatcaacaat gctccaaatg caggcacgac ctatggcaac tggactgcac cgaaaaaaga
      781 atccgcccaa ggggtcggct ttcactttga ggcggataaa aagtggtctt ggggcaatgg
      841 tttcttccac gagtttcgtt taaacggaaa cggcaaatat tactggaata acaaaaaata
      901 taacgaatat tcgctcagag aaagcctcgg cttgggttat caaaatgcaa aacaaaaaat
      961 caccttgttg ccgttttttg agcagatgtg gtatgccggt ggctcaagcc aaaccgaaag
     1021 caccaaacgc tactccaacg caggcggtgt gaatgcccgc tggcaatatt ggattactcc
     1081 acagtggcaa tctgcaatca gctacgaata tgcggaacag cgttacactc gccgccaaca
     1141 tttagacggc aattatcatt ttattgcccc gagcctctat ttttacccta acagccggca
     1201 atattggttt gtgggggcga attttaaccg caccagcccc cgtgatttag atgatagctt
     1261 tattcgccga ggtgtttcta ttggttgggg acaagagtgg aaaaacgggc tttcaaccca
     1321 attaagtgcc agctacgccc gcaaacaata ccgagcccca atgccgattt tccaaattac
     1381 acaacgtaac agtgaatatg gtgtgcaagc cagcatctgg cacagagcct tgcattttaa
     1441 gggtattacc cctcgcttaa cgtggcaata taacaaggta aaaagcaatc atagcttcta
     1501 tagttatgac aaaaaccgtg tctatattga gttttcacat acgttctaaa caaaaacgcc
     1561 ccttaaacgg ggcgatttct tagttatttt ttcaatttac cccaacaatt ttttcaagcg
     1621 atacaactcg tccaaagcct gtcttggggt aagttcatca ggctgaaggg ctttcagggc
     1681 tttttcaact tcattttcta ctacaagcgg ttgaattgct tcattttttt gcaaatcaaa
     1741 accatcggaa aacaacaaat ccgcctgtgg atgttcgttt gcttgtttgg tttggtggga
     1801 aatttcctcc aaatgtgcca aacgctgctt tgccagttga atcacttgct ttggcacacc
     1861 cgccaaggct gccaccgcca agccgtaact tttgctggcg gccccctctt gcaccgagtg
     1921 cataaacaca atactgtctt gatgttcacg cgcgtctaaa tgcacatttg ccaccccttt
     1981 gagctgattc ggcaagccgg taagttcaaa atagtgggtt gcaaacaaag tgagtgactg
     2041 ggttttcttc gccagccatt cggcacacgc ccacgccagt gataagccgt cataggtaga
     2101 agtgcctcgc ccgatttcat caatcagcac aaggctgttt tcggtggctt gatgcagaat
     2161 attcgccatt tcggtcattt ccaccataaa ggttgaacgc cctgaagcta aatcatcgct
     2221 tgccccaatt cgggtgaaaa tacggtcaat cgggccgatt tccgcacttt ctgccggcac
     2281 aaaactgccg atatacgcca tcaatgtaat gagggcaatt tgccgcatat aggtgctttt
     2341 accgcccata ttcgggccgg tcacaatcaa taaatgccgt tgggaattta aaaacaccgg
     2401 attggcaata aacggctcgg ttaaaacctg ctccaccacc gggtgtctgc cgcctttaat
     2461 attcaccatt cgcatcgggc taaagctcgg gcaaacatag cctaaactat cagctcgctc
     2521 ggcaaggttg gttaagacat caagttcaga cagcatcatc gccgctaatt gcaattcgcc
     2581 taagcgaggc attaacacat caaacagttc atcataaagc tgtttttcaa gggcaagcga
     2641 tgcccctttt gctttcagca ctttgtcttc gtaagttttc agctcaggga taatataccg
     2701 ctccgcattt ttgagcgttt ggcggcgaac atagtgaatc ggggctttgt gtgcttgccc
     2761 ttggctgatc tgaatgtaat agccgtgaac cgcattaaag ccgattttca gcgaatcaat
     2821 gccggtgctt tcacgttctc tgatctccaa attttccaga tattgcgttg ccccgtccga
     2881 aagttgccgc cattcgtcaa gctcggcatt ataaccttct gcaatcaccc caccatcacg
     2941 aatgagttgt ggtgggtttt cgataatcgc ccgctccagc aaatcgtgta acgggctgaa
     3001 atccgccagt tgagccaaaa gctgatcgat actagcggtc agattttgtg aattttttgc
     3061 aatttccggt aactgagcca atgcagtgcg tagtcgggtg aggtcacgag ggcgagccgt
     3121 acgcaacgcc actcgggcga gaatccgctc catatcgccg acttgttgta ataacggctg
     3181 taaatccgac attcgctcat attgtatcaa tgctgttatc gccttttgtc gggcttgtaa
     3241 tttaccacaa tctcgaatcg gctgatgaat ccaacgcttg agcagacggc tccccattgg
     3301 ggtcacacat ttatctaaca ccgccgccag cgtgttttcc gtgccacccg ctaagttttg
     3361 ggtcagctct aaattgcgac gagtagctgc atcgagcaaa atagtatcgc tatgttgtgc
     3421 caaatgaatt gcgttaatgt gcggtaaagc ggtgcgttgc gtttcttggg cataatgcaa
     3481 gacacagccg gcagcacaaa gtgccaccac cgctttttcc accccaaatc cggcaagtgt
     3541 ttgcgtgccg aattggcgat ttagcagctg aatcgccgtt accagctcaa attcccacac
     3601 cggacggcgg cgtaaccctt tgtaattcgt taaaattgag gcagcggaaa aatcttccgc
     3661 atacagaatt tctgccggtt gtacacgttg taactcggcg gatagagcct ctttgctagc
     3721 aagttcactg attaaaaacc gcccggaggt catatctagc gtagcaatcg caaatgtgcc
     3781 tttttcttcg taaactgccg ccaccaagtt atcttggcgt tcgggtaaca atgcctcatc
     3841 gctaactgtt cccggcgtaa caatccgtac cactttgcgt tctaccggcc cttttgaggt
     3901 tgctgggtcg ccaatctgtt cacaaattgc taccgattcc cccaacgcca ccaatttcgc
     3961 caaatacccc tccactgcgt gataaggcac acccgccatc ggaatcggct caccggcaga
     4021 ttgccctcgc ttggtgagcg aaatatccaa caatgctgcc gctcgtttcg catcatcata
     4081 aaacagctca taaaaatccc ccattcggta aaacaatagt atgtccggat tttgagcttt
     4141 gagttgcaaa tattgttgca tcattggcgt atgggtggag aaatcttgtg tcatcagtct
     4201 atttattgtg agaaatcatt gctgatagtt taacagattc agccaaggga taaaaacaag
     4261 cggtcatttt tcgctgaaaa tttgcaatgg tcagccgctg tttttttgtt acaatgcacc
     4321 aaatttttaa aacagaggtc agaatgttaa gaaaaatagt gctactttct acaggcttat
     4381 tattggcggc ttgtagcagc aatgaaccgc aacaaccgga agcattcccg ggcgaatttg
     4441 ccaatgccga ttatgtgctt tcggaagaaa atgctcaaaa atgggtaatt gccagcgaac
     4501 aggcaaaaca gtgtatctac cccaatttaa cccgtattca gcaagagcat ttttccaaag
     4561 aagattctta tattttctca caatatgtat ttttctatcc gcttgaagag attatcgggg
     4621 agcagtatgt aaaaatcatt caaaatgatg aaaaatcaat gggttacgct caatatttat
     4681 tcaaaaaact gaaaaataac gaagcggttg aagcgttacc gaaaaaacaa tgtgcgacct
     4741 tacgcaccaa tgcaaaaaat gatttggcag tggtaaaagg gcagtatcaa agcggtatga
     4801 tcgaagaaac caatagccaa gaagggaaat caggcgataa agttgccacc aatgataata
     4861 aattcttctt cgatattatc aaatggggca gtatgttact tctctagtga gcctcaatac
     4921 tcggttgttt taaccacaac cgagccattt atacctaccg attgaacttt tatctaaagc
     4981 ctcagtctta aaatacagtt tttttcaatt attttccctc ttttatattt aaggattttc
     5041 aataaaagca ttaaaaacat tattagcatt gggcgtggca atggctgttt cagctacttc
     5101 atttgcacaa accactcaac ctactgcggc tgaacaaatg aacgcagtta aagcctctgt
     5161 tgccgaaaaa gcaactgtgg ctaaagaagc aacaaaagag aaagcagcgg agttaaaagc
     5221 cggttctgcg gaaaaaatgg cgatagcaaa agccaaaacc gaatcattta aagattccgc
     5281 taaaaacaaa atggacgcag taaaagccac cacagcagaa aaaacggacg tgattaaagc
     5341 gaaagccgca tctgcaagcg acacaatgaa agtgaaagct caggaagcaa aagccgccac
     5401 cgcagagaaa gctgcaactg ctcatgaaac cttaaattca gccaaaaccg caaccgctga
     5461 aaaagcggcc tcaatgaaag cagctgcaac agaaaaaatg tcagcagtga aaaaatcaca
     5521 aaaagtgaat atcaacactg ccaacgaaga gcaattacaa tcgcttaccg gcattggtga
     5581 agcaaaagcc aaagcgattg tagaataccg caaaaaacac ggtaaaatca aaaatgcagc
     5641 agaactggcg aacattcccg gcattggcga tgcaaccatt gagaaagttg ctccatattt
     5701 aactttctaa tgttctgcaa gcggttattt tgttgcaaaa ttttgcagaa aaataaccgc
     5761 ttgttcattt cacaccttgt attcttaaat ttcaccccca ttaagtgaat cgtatttctt
     5821 tcaatacagt attcaataaa ctcaaaagga acagaaaatg gcattagatt tcaattcagt
     5881 tggattagat tcagtagaag caaaaggcgg ttacggcatc ggtttacaaa ttggtcagca
     5941 acttttaggc agcggaatgg acgtaaacgc agaaaccgtt gcccgtggta tttatgatgt
     6001 gttaaacaac aatgagccgg caatcgacat caatgaagtg accgctgcat tacaagaatt
     6061 aggtcagcgt gcggaagcgg ctcaagcaga agcattcaaa gcgattgatg ccgaaaacaa
     6121 agcgttcttg gaagagaata aaaaagcaaa cggtgtaatc gttaccgaca gcggtttaca
     6181 atatgaaatt ttaaccgaag gcacaggcga aaaaccgact gcgacttcaa ccgtgcgtgt
     6241 tcactacacc ggttcattaa ttgacggcac cgtgtttgac agctcggtaa aacgcggtca
     6301 gccggcagaa ttcccggtaa acggagtaat tcgtggttgg acagaagcat tgcaattaat
     6361 gccggttggc tcaaaatggc gtttaaccat tccacaagaa ttagcctacg gcgaacgtgg
     6421 tgcagaagca tcaattccac catttgcgac cttagtgttt gaagtggaat tgcttgatat
     6481 tctctaatca aactcaaata aaaaacctgt ggaggcattt cacaggtttt tgctatttaa
     6541 gataactata ttatgcagaa aaaatcactc atatctcgct tacttaaaaa tattttcctc
     6601 tacggcagcc tgtttatcat tattagcctg gtggttgatt ggtatcgctc gccctccgct
     6661 ccggcacaat ttgagcaaac cgtgcattat gatattcaac accagccgaa agtaatcgcc
     6721 caattaagcc acgagaagcc gatgctactc tatttttggg gaagttggtg ccactattgc
     6781 caagtggttt cgccaaatat ccaacaatta gcgaatgacg gcacggaagt tttaggtgtt
     6841 gccctgaaat ccggcgatga aaatgacgta caagcctatc tcaatgaaaa tggctacact
     6901 ttcgctactt tgaatgaccc aagcggtgat ttctctcgag gttggaacat tcaagccacc
     6961 ccaaccatct tgattatcaa agacggtaaa atcgcccacc acaccaccgg ctacactagc
     7021 tatttgagct taaaattcag actatggctg gcagacgtgt tgtattaaac gattcctttc
     7081 atttgcaaaa aaatccacta aatccgaccg cttgtttaca ccaaaaagac aagcggtact
     7141 aaattcattg tcatcattgt ggtgatcgat aaaatcagcc tcgatgagcc aaaaataaag
     7201 cctcggtttt tgccgttgtc gaatttcacc agtaaatttg ccattgctgt gagggcgtac
     7261 acttccacca ccgtaaaaat cacggtgtaa atataggcag cggtcagagt tgcgactttt
     7321 accgcaataa accaaggggc aataatcgcc accgctaata acggcgaaat ccaaattaat
     7381 tgctgtttgg tgaggttgat tttacgagaa aaagtcgatt gcaaactgac ggttaaaaca
     7441 ccgttgatga ataacgcaat cggcgaatgc tccggtgcgt gcaggacatt gtcgaataaa
     7501 tacggaaaaa tcactcagcg gcacaaatag cattaagtga gcgaacaaaa actctttgtt
     7561 gatgatttcc ttaatttgtg cgaaacgaaa tttcacgccg ccattcacgc cttccaccga
     7621 ataaaacggc ttgaccataa acgcaaacaa gccggcttcc aaaataaagc agatccaaat
     7681 cagcgtttca atcatctcaa acctaataaa cggaataata atcagcgggg cgagcattga
     7741 agacatactg gtgactttta gatatttgcc ttgtaaacgg gttttagcag catattcatc
     7801 gccggcaatc gccagtaaac aggctctggc attagtgccg aataagcaac tccccaaccc
     7861 aaagcaagtg gttgccaaca ataaaatgag gtaattatcc gctgctaaaa acagcatata
     7921 ggcaaccaca tctaataaac agcccaataa catcattttt gccaagccgt agcgatcccc
     7981 ccaaatgccg gctaaaattg ccaatgcctg attacaaaac aacagcaatg aaaggaaaaa
     8041 agcgatttgg gcgttatcta gccctttctc ttttaaataa aagaaaaggg gctgtcctag
     8101 ataactaacc taaactaccc ttaaccaatt gttttaaaaa ggatatttga gattttaagt
     8161 cactgtgatt aaaacgccat tcgcattctt tcaaatacag ctcaaaatgc actttgggaa
     8221 tgccgttaaa cttacgcaaa tggcgttttg cttggctccc aaaattctca attccattaa
     8281 tgtgattttg attttcagcg aagtgtgtgc tgtgattaat gcgaaaatgg ttaaattcac
     8341 tcacatcaag cacatcataa cttcgataga aatcggtgta aacaatacta tcgggtttca
     8401 ccttttcccg aataatcggc aaaagtgtgg caaattgcgt gtttggtact accacggtat
     8461 aaacctttcc gtcccgcttt aaaagcccga acacggcggt tttgcctgct gcaccacgtc
     8521 cacgtttacc tttacgatga ccgccgaaat aactctcatc aacctcaatt tctccctcaa
     8581 acatttccaa atgagggcta tgttgataga taagcaaccg caagcgatgg aagtaatacg
     8641 ccgccgtgtt tttgtttaca ttgaccaact cagatgctgt tcgggctgtt acccctgcaa
     8701 caaactgctc aatgagtttg ttttgtttgt actgacttag acgacttttt ctcatttggg
     8761 tatcttaacc taaatggagt ttttagtcgt tatctaggac agccccaaag aaaaacacgc
     8821 tttgcattga aaaaaaggcg gtggtggaaa taaaacggcg taggagtaat agtttttcta
     8881 aagacattca gaatggttga attggttaaa taaagagcgg ttattctacc ttttaagtca
     8941 accccaatca atcggctttt gttttacctt tggcgtgggt ttcggtatga taagcgatat
     9001 gtagtggcgg gtcctgtgcc cgcctaaata ccaatgataa cttgcgggcg agcacaggac
     9061 tcgcccctac gataaacaag aaaatgaaag acaccattgt tgctcaagca acaccgattg
     9121 gcagaggcgg tgtggggatt ctgcgagttt ccggtccgct tgccgaaacc gttgctcaag
     9181 ccgtattagg caaaacattg ccaccccgta tcgcaaatta tttgccgttt aaagacgaag
     9241 atggcactgt gttggatcaa ggcatcgcct tattttttaa agctcccaac tcctttaccg
     9301 gcgaagatgt gcttgaactt caaggacacg gtgggcaggt tattttagat ttactgctca
     9361 aacgcatttt acaagttaag gggctacgca ttgcccgagc aggtgaattt tccgaacagg
     9421 catttttaaa cgataagctc gaccttgccc aagctgaagc gattgcggat ttaatcgacg
     9481 ccaccagcga gcaagccgct cgttcagccc tgaaatcact acagggtgaa ttttctaata
     9541 aaatcaatgc gttagttgat tcagtaattt atttacgcac ttatgtggaa gcggcgattg
     9601 acttccccga tgaggaaatt gactttctgg cagacggtaa aatcgaggca aaattaaatg
     9661 agattatcgc tcaattagac ggtgttcgcc gtgaagcgaa acaaggctcg attctgcgtg
     9721 aaggaatgaa agtagtgatc gccggtcgcc cgaatgcagg gaaatcaagc ttgcttaacg
     9781 ccttagccgg acgagaggcg gcgattgtaa ccaatattgc tggcacaacc cgtgatgtgt
     9841 tgcgtgaaca tattcacatt gacggaatgc cgttgcatat tatcgacacc gccggtctcc
     9901 gtgatgccag tgatgaggtg gaacgtatcg gcattcagcg tgcttgggaa gaaatcgccc
     9961 aagccgacca cgttttatta atgattgaca gcaccgagca acaagccgat cagttccgac
    10021 aagagtgggc ggaatttcta gccaaactgc cggcaaatat gcctgtgacc gtaattcgca
    10081 acaaagtcga tttatccggc gagcaggaag gcttaattca ggtggacgat ttcacgatga
    10141 ttcgcctctc tgcccaaacc aaagtcggcg ttgatttatt gcgtgaacac ttgaagaaat
    10201 caatgggcta ccaaagttct acggaaggcg gattcttggc tcgccgccgt catctgcaag
    10261 cattggaaac cgctgccgag catttagagc gagggcatat ccagcttact caattcttag
    10321 ccggcgaatt gttagcggaa gagttgcgta tggtgcaaaa tgccttaagt gaaattaccg
    10381 gccagttcac ctctgatgac ttattaggca acattttcag ctcattttgc atcggtaaat
    10441 aaatggcact ttttaaccgc tttcaaaccc agtgtgcaac gcatttgccg aaccaaaccg
    10501 cctttttaat cggcttaagc ggtggggtgg attcggtggt actactccac ctttttgccc
    10561 gcacctcatt tcacgttagg gcaatttatg tccaccacgg gctaagccca aatgcggacg
    10621 actgggcagc cttttgcgaa caatattgca agcggttaaa tattcccttt attttacaaa
    10681 aggtcagagt ggatagctca aacggcgttg aaaacggggc gagagaagct cgttaccaag
    10741 ccattcaaca acagcttaag cccaatgaag tgttcgccac cgcccaccat ttagatgacc
    10801 aagccgaaac ttttttgctc gccctcaagc gaggcagtgg agtcaaagga ttatcggcga
    10861 tgcaagcggt cacttttttg caaaatttta ccgtttttcg accgctactc acttttacta
    10921 agtcagattt gatgggttat gccgttcaac atcagctagg ttggattgag gacgaaagca
    10981 atgccgataa ccgttacgac cgtaatttcc ttcgcaatag catcttgcca ctactcaatc
    11041 aacgttggca gcacttcagc caaatggttg cccgttccgc tcagcattgt gcagaacagc
    11101 aagccttgat agaagagcta ttaagcaatg aactcaagtc aagaacaggg gaaaaacaac
    11161 aactcaacat taacggcttt gggcaatttt cacttgccaa gcaacagcaa cttagccgcc
    11221 tttggctgga acaaaacgga gtgagaatgc caagccaagc ccagctacaa gcggtcattt
    11281 ctgaactgat ttttgcaaaa gccgataaaa acccacaggt taaagtcggc gaaaatatta
    11341 tcagacgcta tcaacaagct atttacgtta ccgaagagat cgccgacatt ccgccgtttg
    11401 aggtagtact tcccacagaa accaaagtgg aattacccta tcagctcggt actattattc
    11461 gccaacaaca agagatcatt tgcaaaaaaa acgggaaaaa tcaccgcttg caactgcccc
    11521 aagagctggc tcaatcaact atttctatta aaatcgggca actaggcaaa gtaaaatgct
    11581 acggcaaggc tcaacgggaa gaaatgaaaa agatttggca aaatcacggc atacctgttt
    11641 gggaacgcaa ccgtacaccg ctgatttttt ggcaagacga attagttggc ctattaccta
    11701 tcctctaggg tgaaattgct gatgaagcga tttcaaacgg gcttttgcca cttgagtgta
    11761 aatctgggtg gtcgataaat cactatgccc cagcaacatc tgtaccactc gcaaatcagc
    11821 cccatgattg accaaatggg tcgcaaaggc gtggcgaagc acgtgaggcg agagtttatc
    11881 tgcatcaata cctgcaagca cggcatagtg cttaatccga tgccaaaacg tctgccttgt
    11941 catctgctga cctcgccggc tcggaaatac aacatcagac tgctgattat tcagcaaaat
    12001 agggcgaccg tactggaaaa actcctgtat ccaataattc gcctcctcgc ccaatggcac
    12061 taaccgctct ttatcccctt taccgataat tctcaccacc ccttgtttga ggctgatatt
    12121 atccatcgaa agcgacacca gctccgttac ccgcagaccg gtggcataca gcagctccag
    12181 cattgcttta tcccgtaact ctatcggatc taacgtattc ggggcatcta gcaaatccat
    12241 tacctgatct tcacttaagg atttgggtaa agaagcaccc cgtttagggg aagaaagggt
    12301 taaagtcggg tcatcttggc gataatgctc aaggcataaa aaacggaaaa atttccttaa
    12361 acaactcaac attctggcag agcttgtcgc cttatagcct tgctccaaac gctcgccgag
    12421 aaaaccttgt aagtcgatat gatcgagaga cagaaatgct ttaggttcag aaaaataatc
    12481 ggaaaaacgc tctaagtcag aacgataaga ggcaacggta ttttcagaca aaccgtgttc
    12541 ttgccatagt gtatcgagaa attgttcaat aatagggtca agctcagcca tacaagcggg
    12601 tatattttca ggaaattttg caaattttaa cagaattaaa tctataaaaa tacaaaagcg
    12661 atagaaacga aaaaaccgat tagcttatgc taatcggttt a
//
LOCUS       DANLRW010000076        12612 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.076, whole genome shotgun sequence.
ACCESSION   DANLRW010000076 DANLRW010000000
VERSION     DANLRW010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 12612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12612
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.076"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            479..2866
                     /locus_tag="PXA71_001776"
     CDS             479..2866
                     /locus_tag="PXA71_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HDL5105866.1"
                     /translation="MEKMMRKINQLIISPYFFLSILSASANSDFWKSDLNFNLTNITK
                     RVGVDNFTTPVAGEPWAGIGPNGEAAGTAPLYYSRIPAMQVTEDNKLVVMFDLRWNRA
                     YDQDRIDPGIAISSDGGHTWTKKTAWSFDRTNHPARRSMDPTLLHNPIDNSLYVMHGT
                     WSMSDQQWYGGRVPHFNSGSWAATIYKSTDGGLNWEKNTEFSKFSNLDVFSKVTKNGK
                     PTLGFLGGVGSGIVMQDGTLVFPIQTAHQNGIATTIMYSKDNGKTWEMPEIDNPVAPN
                     QSSLENMVFELEPGKLVMTGRGNSRWAYSSTDMGKTWELFTPTNGLLPTSSQPTQGSS
                     IYVTLPNGRKVLLISKPDGKNDGWKRGDITLWMLDAKDPSHKHKVHIIRPGSGNAAGA
                     GYSSLAYKEGNLFVAFENDGDISVKNLTEHIAEMEAKAIEWGLPDELTPALDKINALP
                     YLNKAQKETLVEKMRRANDTAIAQSFVINKEMYNLKNNSDELDKLAKNITKALPSQQN
                     IYQRALAYVNKVTNTADTTYLNYNGIMDTYANLYESYLALNTKLDFTRYIQKARKFNE
                     YNTDILYRSFDNFFAHYDTGVKHNNLSLGLNTKLSENLRGGLFFEYSNKNRNSVQIGA
                     RAKYEMDNHQLSGFLRYRGVKHKDMLARNNSVDGYLNYAYRIQLDDKLSISPSVGAYV
                     SRSSRSLIDEDLAINSRTVYASDVGLNIHYKLNDIDAYIRPSIGFVNGDITLSQSNDM
                     TNTYKIKDKSNVYSVTTGLKKRFANGVALGADFKLHRYGSQTTESNFGLNVSYNW"
     gene            complement(3033..3569)
                     /gene="hpt"
                     /locus_tag="PXA71_001777"
     CDS             complement(3033..3569)
                     /gene="hpt"
                     /locus_tag="PXA71_001777"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HDL5105867.1"
                     /translation="MEKHHIETLHSKEEVLNRINELAKEINQHYHQKQCQNLVVVGLL
                     RGSFMFMADLVRKLELPVEVDFLTASSYGSSTESSRDVKILKDLDGEIQGKDVLIVED
                     IIDTGFTLSKVGEILKLREPNSLAICTLLDKPCRREVDVPVKWVGFEIPDEFVVGYGI
                     DYAQKYRHLDYIAKVVIE"
     gene            complement(3608..4957)
                     /gene="pmbA"
                     /locus_tag="PXA71_001778"
     CDS             complement(3608..4957)
                     /gene="pmbA"
                     /locus_tag="PXA71_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HDL5105868.1"
                     /translation="MSITDKQTLLQQEQELRQAVEFALNFAKQAGAEAEVGVTKVAGL
                     SVSSRLEQVENIEFNNDGSLGISVYLGKRKGNASTSDLQPESIQKTVEAALAIAKYTS
                     EDACTGLADKELLAFEAEDLELYHQADISVDQAVELAIEAEHYALNADEKIVNSDGAT
                     FNSHSGVRVYGNTHGMLQSYLSSRYSLSCSVISAYEDQLERDYEYTIFREFDKLQAPK
                     WVGEQAAIKAVDRLNPQRIKTGEMSVIFYNDVATGLVGHLAGAISGGALYRKSSFLLD
                     KLGEQILPEWFAISERPHLLRQLASSAFDSEGVITQNREIITDGVLQTYLMTSYSGRK
                     MGLKSTGHAGGIHNWLVKPNRQGGLNTLLKEMGTGLLVTEMLGSAINSVTGEYSRGAA
                     GFWVENGEIQYPVAEITIAGQLQDMYKNLVAVGDDIEHRSNIQTGSILLEKMMVSGE"
     gene            5056..5586
                     /locus_tag="PXA71_001779"
     CDS             5056..5586
                     /locus_tag="PXA71_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HDL5105869.1"
                     /translation="MAKKRSKNEIDWTDEEEEIIWVSKSEIKRDSEHLKKIGAELIEL
                     TPQNLEKIPLDDDLKEAIRQAQGFKMEARRRQIQFIGKLLRNRDQEPIQEALDKVKNR
                     HNQQQALLHKLELVRNQLIAMGDASLDNLLTEYPQLDRQHLRNLIRGAIKEREANKPA
                     KNYREIYQYLKTEIVE"
     gene            5592..5963
                     /locus_tag="PXA71_001780"
     CDS             5592..5963
                     /locus_tag="PXA71_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB2 family protein"
                     /protein_id="HDL5105870.1"
                     /translation="MEYLSTILKAHIGLAYISLILLLTRGFLSSKMVDWRQYKILRIA
                     PHAVDTFLLITGIAAVAIFLAYDFFTLAQFSWLLPKLLFLVLYIVFATKAFKKGQPFS
                     LKFYLLAVVSFLLMMLTATFH"
     gene            5976..6689
                     /locus_tag="PXA71_001781"
     CDS             5976..6689
                     /locus_tag="PXA71_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HDL5105871.1"
                     /translation="MIGPFVNAGAIILGGVLGACLGSHLPERIRTTLPLVFGLCCFGL
                     GMMLTASVKYMSAVALALILGTIIGELIYLENRIGKVAGLARGLIDRLFPPVHSLSQE
                     EFLEKFIALLVLFCVSGTGIFGAIKEGMTGDPSILYIKSILDFFTAMIFAASLGYAIA
                     AIAVPLIIVQGILILLATVIMPLTTANMMADFSATGGLLLFATGFRICGIKNFPVANM
                     LPALLLAMPMSYFWEWLVH"
     gene            6692..7255
                     /locus_tag="PXA71_001782"
     CDS             6692..7255
                     /locus_tag="PXA71_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HDL5105872.1"
                     /translation="MKKRIIVGISGASGFQYGYKVLELLKPFSEIETHLVISKGAELT
                     RTLETDYTREALHDLADQIHSLNNVGASIASGSFKTEGMVIAPCSMRTLAAIANGLSD
                     NLLTRAADVVLKERRKLVLMVREAPLNLAHIDNMRKVTEMGGIIFPPIPAFYQKPTSL
                     DEMVTHSVSHALSLLDIDIPNTPHWGE"
     gene            7318..7758
                     /locus_tag="PXA71_001783"
     CDS             7318..7758
                     /locus_tag="PXA71_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDL5105873.1"
                     /translation="MHNPIPTHILDFIQTNHVVNIAAHTEQDFWAANCFYAFDQENVR
                     LIILTAKKTRHAGLMLENPHIVGTICGQIEKINEIEGVQFSATAECLEDKQAEKAALQ
                     IYYQKHPLARLKPSDVWVLSFNTIKHTGNKLMFAKKTIWERNII"
     gene            complement(7762..8637)
                     /locus_tag="PXA71_001784"
     CDS             complement(7762..8637)
                     /locus_tag="PXA71_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5105874.1"
                     /translation="MMKTILIDEANQIKGFSHLYRLRSDLMLKYTEISVTETVEQEPA
                     EFEAGLRLVILLSGRSEIDFNSEVFELDASLKPQAAFLPLNRAEMGRKIFRKGQLQKE
                     LVIFLYPKWLIESQLNLASYHHFKQHLKAHQIILTQSMLKLIHDIVSEQEMQPFGLLE
                     KEGNLLALLASAFSQLTQAPRLKKDRVQQLTELLESGKFDGWSLKQIAIYFHTNVTTL
                     QNEFQHYHKTSIFAYLRRSKLEQAYKLLLQGQSITQAAEFAGYANSENFSTAFKRTFG
                     ITPSQIKRDKAKGII"
     gene            8743..10818
                     /locus_tag="PXA71_001785"
                     /pseudo
     CDS             8743..10818
                     /locus_tag="PXA71_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249230.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
     gene            10862..12298
                     /locus_tag="PXA71_001786"
     CDS             10862..12298
                     /locus_tag="PXA71_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3327 domain-containing protein"
                     /protein_id="HDL5105875.1"
                     /translation="MKKTTACILTFLVSSVLYANNITIELKQNDFVQGKLIQKAQQPL
                     SLSIIFPDQSSRLLAQNVFGEQDFMFKSELIGTATFSILANGATVSDQDFTLTIERHI
                     PISAQIAPPKVIENTQLEELSQKIAKNPEKQTALINDFWDKAKQAGTPLIEPLDEQQS
                     RVTFLWRGATKNARIWGGVSTEHDFMQRFGETDIWYKSYIVPNDTLVEYKLAPDVPTL
                     PVDENTQRRALLATAQADPLNKTAYFEKIGQNIHNTDKFNYASLLKLPNAPTQSFLTE
                     APNIAKGKLQQLIFESATLGNKHRLFVYLPDGFSAEKNYAVLYLFDGVEYTERVPTKT
                     ILDNMIAQKVILPTVAVFIENPSSESRRVELPANPIFTQVLAKELVPFVEKQLNIKTK
                     ERIIGGSSYGGLSSAYTVLNYPNVFSKALILSGSFWWQPKGTPSEQSHYIAQQFIQKE
                     KLPLCFFISAGFYESGKSAICKRSNYFA"
     gene            complement(12440..12612)
                     /locus_tag="PXA71_001787"
                     /pseudo
     CDS             complement(12440..12612)
                     /locus_tag="PXA71_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011625997.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
BASE COUNT         3912 a         2508 c         2344 g         3848 t
ORIGIN      
        1 tttgactaaa tttagttcaa cagagctaaa cgaaaaaacc ttagaaagcc tgtaaaatca
       61 acgtttacag gcttttttgt tgttttagct caatggcact aaacatttca tatcgcaaat
      121 tttaagtagc ctagcaaatt ttccgccaaa tatgaccgct tgtaatgccg ttaggttatt
      181 gcctggcggc ctttttgtta cagctcttat attttttaca ccaaagttca gaaaaagtca
      241 cttttatcac taacattaag atgaaacctt gatacaaagc ttgggcttcg gtgatattta
      301 aaaaatatca cttttttcaa taattgtgac aaatctctca gattttttta tttttttgtg
      361 cttaaatctt aagcataaaa tgccgttata attacttgct atctggtatt ttatacataa
      421 gattgaacca tataatagct gttcagctaa aaattagtct ttgcacttta tccccctaat
      481 ggagaaaatg atgagaaaaa tcaatcagtt aatcatatcc ccatactttt tcctaagtat
      541 tttatctgct tccgctaact ctgatttttg gaaaagcgac cttaatttta atctcacaaa
      601 tattaccaag cgtgtcggag tcgataactt taccactcca gtagctggcg agccttgggc
      661 tggtattggt ccaaatggtg aagctgcagg tactgcgcca ttatattata gccgtattcc
      721 agctatgcaa gttaccgaag ataacaaatt agttgttatg tttgatttac gctggaatcg
      781 tgcgtatgac caagatcgta ttgatcctgg tattgcgatt tcttccgatg gtggccatac
      841 ttggacgaag aaaaccgctt ggtcttttga tagaactaat cacccagcac gccgttcaat
      901 ggatccaacg ctattacata atcctattga taatagttta tatgtaatgc acggaacttg
      961 gtctatgtcg gatcaacaat ggtatggtgg gcgtgttcct cactttaata gtggcagctg
     1021 ggcagctacc atttataaat ctactgatgg tggtttaaat tgggagaaaa atactgagtt
     1081 tagtaaattc agcaatttag acgtattttc taaagtcacc aaaaatggaa aacctacctt
     1141 aggcttttta ggcggggtcg gatctggaat tgtaatgcaa gatggtacgt tggttttccc
     1201 aattcaaacc gcacatcaaa atggtattgc gaccactatt atgtattcta aggataatgg
     1261 gaaaacttgg gaaatgccag aaattgacaa cccagttgca ccgaaccaaa gttctttaga
     1321 aaatatggtg tttgaactcg aaccgggtaa gctagtgatg actggacgag gaaacagtcg
     1381 ctgggcatac tcttctactg atatgggtaa gacctgggaa ttatttactc caactaatgg
     1441 attattacca actagctcac aaccaactca aggctcttct atctatgtaa cactaccaaa
     1501 tggtcgaaaa gtgctactaa tctctaaacc agatggaaag aatgatgggt ggaaaagggg
     1561 tgatattaca ctttggatgc tagatgcaaa agatccatcg cacaaacaca aggtgcatat
     1621 tattcgtcca ggttcaggta atgccgctgg tgctggttat tcctctttag cctataaaga
     1681 agggaattta tttgttgctt ttgaaaacga tggtgatatt tcagtaaaaa atttaactga
     1741 acatattgct gaaatggaag caaaagctat cgaatgggga ttaccagatg aacttactcc
     1801 tgctttggat aaaatcaatg cactgcctta tctcaataaa gctcaaaaag agacgctagt
     1861 cgaaaaaatg cgtcgtgcta atgatactgc gattgcacaa tcttttgtga ttaacaaaga
     1921 aatgtataat ctgaaaaaca atagtgatga gctggataaa ttggcaaaaa atattactaa
     1981 agcactgccg tctcaacaga atatttatca aagagcctta gcctatgtga ataaagtcac
     2041 caatacagcg gataccactt atttaaatta taatggtatt atggatacct atgctaattt
     2101 atatgaaagc tatttggctt taaatactaa attagacttc actcgctaca tccaaaaagc
     2161 gagaaagttc aatgaatata acactgatat tttatatcgt agctttgata atttctttgc
     2221 ccattacgac acaggtgtaa aacacaataa tctatcctta ggcttgaata caaaattaag
     2281 tgagaattta cgtggtggct tattctttga atacagtaat aaaaatcgta atagcgtaca
     2341 aattggtgca agagctaaat atgaaatgga taatcaccaa ctttctggct tcttacgcta
     2401 tcgtggcgta aaacataaag atatgctagc acgtaataac agtgttgatg gctacctaaa
     2461 ttatgcttat cgtattcaat tagatgataa attaagcatt agcccatcag ttggtgctta
     2521 cgtttcacgt tcttctcgct cattaataga tgaagatctt gcgattaata gccgcacggt
     2581 ctatgcaagt gatgtaggat tgaatatcca ttataagcta aatgatattg atgcttatat
     2641 tcgtccaagt ataggctttg tcaatggtga tataacttta tctcaatcta atgatatgac
     2701 aaacacatac aaaataaagg ataaaagtaa cgtgtattct gtcacgacag ggttgaaaaa
     2761 acgctttgca aatggtgtgg cattaggggc tgatttcaaa ttacatcgtt atggttctca
     2821 aactactgaa agtaatttcg gtctaaatgt aagttataac tggtaatacc gtaaactgat
     2881 tacgatttaa aagttagact agcccaagac tgagttctat attccataga gctcagtctt
     2941 ttaatttttc tttctcgata agaatatttt atatttcaac cttaatcgag aatgtaatta
     3001 gtcgtgaaaa tctaagtagt gattgagttt ttttattcaa tcactacttt agcaatataa
     3061 tctaaatgac gatatttttg ggcataatca atcccataac ccaccacaaa ttcatcgggg
     3121 atctcaaatc ccacccattt tacgggcaca tcaacttcgc ggcggcaagg tttatctaat
     3181 aaagtacaaa tagcaagtga atttggctca cgtaacttga gaatctcccc taccttgctt
     3241 aaggtgaagc cagtatcaat aatatcttct acaatcaata catctttacc ttgaatttcg
     3301 ccatctaaat cttttagaat tttgacatca cggctggatt ccgtgctgct gccatagctt
     3361 gatgcggtta gaaaatccac ttctacaggt aactctagct ttcttactaa atctgccata
     3421 aacataaacg agcctcgcaa taaaccaacc actacaaggt tttggcactg tttttggtga
     3481 tagtgttgat tgatttcttt tgctaattca ttgattcggt ttaatacttc ttcttttgaa
     3541 tgtagcgttt cgatatgatg tttttccatt gatttctcca aataaaattg attacaagcg
     3601 gccgttttta ctcgcctgaa accatcattt tttctaataa gattgaacct gtttggatat
     3661 ttgagcggtg ttcaatatca tcgcctaccg ccactaaatt tttatacata tcttgcagtt
     3721 gccctgcaat ggtaatttcc gctacagggt attgaatttc accgttttct acccaaaatc
     3781 ctgctgcacc tcgagagtat tcccctgtta cgctattaat cgcagaacct agcatttccg
     3841 ttactaataa tcctgttccc atttccttaa gtaacgtatt taaaccacct tgacgatttg
     3901 gtttaactaa ccagttatga ataccacctg cgtgtcctgt actttttaac cccattttac
     3961 gccctgaata gctagtcatt aaatacgttt gtagcacgcc atcagtaata atttcacggt
     4021 tttgggtaat tacaccttca ctatcaaacg cagaagaggc taattgacgc aacaaatgcg
     4081 gacgctctga aatcgcaaac cattcaggca gaatctgttc gcctaattta tctaataaga
     4141 aacttgattt gcggtataat gcaccgccac taatagctcc ggccaaatgc cccactaaac
     4201 cggttgccac atcgttatag aaaatcacag acatttcgcc ggtcttaatt cgttgcggat
     4261 tcaatctatc taccgcttta attgcagctt gctcccctac ccatttcggt gcttgtaatt
     4321 tatcaaactc acggaaaatg gtgtattcat aatcacgctc aagctgatct tcataagctg
     4381 aaatcacgct acaagagagt gaatatcggc tcgacaggta actctgcaac attccgtgcg
     4441 tattgccata aacacgcacg ccactgtgag aattgaaagt tgccccgtca ctattcacaa
     4501 ttttttcgtc tgcatttaag gcataatgct ccgcttcaat cgccaattcg actgcttgat
     4561 caactgaaat atccgcttgg tggtacaatt ccaaatcttc tgcctcaaag gcaagcaatt
     4621 ctttatcagc aagcccggta caagcatctt ctgaggtata ttttgcaatc gcaagagctg
     4681 cttcaaccgt tttttgaatc gactctggct gaagatcgga ggtggaagca ttacctttgc
     4741 gtttgcctaa ataaaccgaa ataccgagag aaccatcgtt attgaactcg atgttttcaa
     4801 cttgctctaa acggcttgaa accgaaagcc cggcaacttt agtcacgcct acttccgcct
     4861 ctgccccagc ctgttttgca aaatttaagg caaattcgac cgcttgtcgt agctcctgtt
     4921 cttgttgtaa caaggtttgt ttatctgtaa ttgacatttt gttccattga ttgattgcat
     4981 tgatgaatat attctaactc aaatttctgt tagaatacgg cattttttag agtttatgta
     5041 atgaaaggat aaagaatggc taaaaaacgg agcaaaaacg aaattgactg gacagatgag
     5101 gaagaagaaa tcatctgggt cagcaaaagt gagataaaac gagattctga acacttaaaa
     5161 aaaattgggg ctgaattgat cgaattgacc ccacaaaatt tggaaaaaat tccactagac
     5221 gatgatttaa aagaggcaat tcgccaagct caaggcttta aaatggaggc tcgccgccgt
     5281 caaattcaat ttatcggcaa attattacgc aaccgtgacc aggagccgat tcaagaagcc
     5341 ttagataaag tgaaaaatcg ccataatcag caacaagccc tattacataa attggaatta
     5401 gtgcgtaatc aactgattgc aatgggcgat gcatcattag ataatttatt gacggaatat
     5461 cctcaattag accgccaaca tttgcgtaat ttaattcgtg gggcaattaa agagcgtgaa
     5521 gccaataaac cggcaaaaaa ttaccgtgaa atttatcaat atttaaaaac tgaaatcgtg
     5581 gagtgattat tatggagtac ctatcaacca ttcttaaagc tcatatcggc ttagcttata
     5641 ttagtttaat tttattatta acccgtggat ttttatcgtc aaagatggtg gattggcgac
     5701 aatataaaat tttgcgcatt gccccacacg cagttgatac cttcttactt atcaccggta
     5761 ttgctgctgt cgctattttc ttagcttatg attttttcac cttagcacaa ttcagttggt
     5821 tgctaccaaa gttactcttc ttagtacttt atattgtatt tgcgacaaaa gcgttcaaaa
     5881 aaggacaacc gttttcgctc aaattttatc tgttagccgt agtctcattc ttattaatga
     5941 tgctaactgc cacttttcac taaataaggg aaactatgat cgggcctttt gtgaatgccg
     6001 gtgcaattat tttagggggc gtgctgggtg cttgtttagg gagtcacctg cctgaacgta
     6061 ttcgcactac gttgccgctg gtattcggct tatgctgttt cggcttaggt atgatgctga
     6121 ctgcctcagt aaaatatatg tctgcggttg ccttagcatt gattttaggc acgatcatcg
     6181 gtgaactgat ttatttagaa aacagaatcg gtaaagttgc cggtttagct cgtggtttaa
     6241 ttgaccgcct attcccaccg gtgcatagtc tttcccaaga agagttttta gagaaattta
     6301 ttgctctgct tgtactgttt tgtgtgagcg gtaccggcat ttttggtgca ataaaggaag
     6361 gaatgacagg cgatccaagt attctttaca ttaaatcgat tctagatttc ttcaccgcaa
     6421 tgattttcgc tgcttcgtta ggctatgcca ttgcggcgat tgcagtgccg ttgattattg
     6481 tgcaagggat tttaattcta ctggcaaccg tgattatgcc tttaaccact gccaatatga
     6541 tggcagattt ctccgcaacc ggcggtttac tgctatttgc aaccggcttt cgcatttgtg
     6601 gaattaaaaa ctttccggtc gcaaatatgc taccagcact actccttgcg atgccgatgt
     6661 cttatttctg ggaatggttg gtacattaat gatgaaaaaa cgtattattg tcggcattag
     6721 tggggcaagt ggttttcaat atggctataa agtgcttgaa ctgctgaaac cgttttcaga
     6781 aattgaaacc caccttgtaa tcagcaaagg agctgaactc actcgtactc tcgaaacgga
     6841 ttatacccga gaagctcttc atgatttagc tgatcaaata cattcgctaa acaatgtcgg
     6901 agcaagcatt gccagtggtt catttaaaac cgaaggtatg gtcatcgccc cgtgttctat
     6961 gcgaaccctt gccgctattg ccaacggttt gagcgataat ttgctgaccc gtgcggcaga
     7021 tgtggtgttg aaagaacggc gtaaattggt attaatggtg agagaagctc cgctcaacct
     7081 tgctcatatt gacaatatgc gaaaagtcac agaaatgggc ggcattattt tcccacccat
     7141 tccggcgttt taccaaaagc caaccagcct tgacgagatg gtcacccaca gcgtaagcca
     7201 tgccctttcc ctgttggata ttgacattcc aaatacccca cattggggag aataattcgg
     7261 cttatctttt gctttttgaa atgctagaat acctgataaa aactatcagg tatttttatg
     7321 cacaatccaa tcccgaccca tattttagat ttcattcaaa ctaaccacgt tgtcaatatt
     7381 gcagctcata ccgaacagga tttttgggca gcaaattgct tttatgcctt tgaccaagaa
     7441 aatgttcgct tgattatctt aaccgccaag aaaaccagac acgctggctt gatgcttgaa
     7501 aacccacata ttgtcggcac aatttgtggg caaattgaga agatcaacga aattgaaggt
     7561 gtccaattct ccgctaccgc cgaatgttta gaagataaac aagccgaaaa agccgctttg
     7621 caaatttatt accaaaaaca cccgcttgca cggcttaagc ctagcgatgt ttgggtgtta
     7681 tcattcaata ccatcaagca caccggtaat aaacttatgt ttgcgaaaaa gacgatttgg
     7741 gagagaaata taatttgaag ctcaaataat gcctttagcc ttatcccgtt tgatttggct
     7801 tggtgttatc ccaaaagttc gcttaaatgc cgttgaaaaa ttctccgaat tggcatatcc
     7861 ggcaaattca gctgcttgtg taatactctg cccttgtaat agtaatttat aggcttgttc
     7921 taatttagaa cgccttaaat acgcaaaaat agaggttttg tggtaatgct gaaattcatt
     7981 ttgtaatgtg gtcacattgg tatggaaata tattgcaatc tgcttcaaac tccagccgtc
     8041 aaatttaccg ctctcaagca attctgttaa ctgttgcacc cgatcttttt ttaaccgggg
     8101 agcctgtgtc agctgagaaa aagcacttgc taataaagct aatagattac cttctttctc
     8161 aagtaaccca aatggttgca tttcctgctc tgacacaata tcgtgaataa gttttaacat
     8221 actctgagtc aaaataattt ggtgggcttt taaatgctgt ttaaagtgat gatagcttgc
     8281 caaatttaac tggctttcta ttagccattt agggtagaga aagataacaa gctctttttg
     8341 aagttgccct ttcctaaaaa ttttacgccc catttcagct ctatttagcg gtaaaaatgc
     8401 ggcttgaggt tttaaacttg catctaattc aaatacttcc gaattaaaat caatttccga
     8461 tcgaccactc aacaatataa ccaatcttag tccggcttca aattccgcag gttcttgctc
     8521 tacggtttca gtaactgaaa tctctgtata tttcagcata agatctgaac gtagtcggta
     8581 taaatgtgaa aaacctttta tttggttagc ttcatcaatc aagattgttt tcatcattaa
     8641 aaactttttt tcgcatagtc aaaattttat tttacaaagg ttttttgcat aaaaacaaga
     8701 tattattata ttcaataatc attcttattt aaggataaac taatgaaaat aaaaaaatat
     8761 tcactttctc taatcacttt agcgattgta gctcctcaag tattagcaga aacaacctct
     8821 caagcagaac taaatgctat tgaggtcaaa gagaaattgg cagctaccac cggctatatt
     8881 cctgtttata cgactgtagg aacgaaaaca ttaacctctt tggctcgtac accttttagt
     8941 atcaatgttg tctctgatga tttaatgcat gaccaagctg ttcgttctgt taccgattca
     9001 gtggcttata cctccggtat gatgggtggc tatcgtggta acaattcgct tatcgaaatc
     9061 tccattcgag gcattggcaa taaaagtgat ggcagtacaa ttccgaccta tttaaacggt
     9121 tctcgctacc aaactgcatt tgaaatcgat ccgttcttct tagaaagtat caatgtgatt
     9181 aaaggtccaa actccatttt atacgggcaa gctaatcccg gtggcgtaat ggatattatc
     9241 accaaaaaag ccggcagtaa cccacatcgc catttgcaat ttgtggtggg aaaccatcaa
     9301 cgataccaaa tcgggctgga tattgaagaa aatctctcca ataccttatc cgctcgttta
     9361 atcggtcaat tagaacgaac aaactggaat acctaatttg taaaagaaaa aggcggtgct
     9421 tttgctccaa gcattttatg gaaaccgact acaaatacag aacttaatgt ttacgcttac
     9481 tatgcaaaaa aaccgaaagc cggtgatcgt aactttttac cgaaagaagg aacgattaat
     9541 agcgtaaacg ggaaggaact accctatgat atgttcctca gcgatctgaa ctatcacggt
     9601 ttaaaagccg aacaaatgca agtaggttac agtttctcac ataaatttac gccaaaccta
     9661 acgttccgcc aaaatgcaag ttaccataat ggcgaagaga atttcaaaaa tctagtttat
     9721 tggggcgatg tcggttcggt tttagaacgt agagctcgcc attgggatgt caaaacccaa
     9781 gaaatcaact tagataacca attagaatgg gtatttagca cagcaaatat aaatcatacc
     9841 ttgttagccg gtattgatta taaacgagtg cgtaaagatc ttgataacta tatggggatt
     9901 gcccctgatt ttgattggca gaaccctgtt tatggcgtga ccgttactga gcctagctta
     9961 ttttcaagtg aagtgaagca tttaaaacaa cttggggttt atctacaaga tcaaatagaa
    10021 atcggtaatt ttgacttcct gttaggcggt cgttacgatc gagcaaaaaa cagcaaccaa
    10081 gatcgtttga acagtaaaac agagaataac caagaaggaa aatttacttg gcgtacaggc
    10141 gtagtttaca actttgaaaa cggtatcgct ccgtatatca gctacagcac ttcttttgtg
    10201 ccatcggctg aaaaagatgc tcaaggaaat ttcttaaaac caacaactgc tgggcaatgg
    10261 gaagtgggaa tgaaatacca acctacccaa gacaccttac tgaccttagc aggatttaaa
    10321 attacacaaa aagatttagc caattatcaa tggcaaaccc gctcttatga gcaaattggt
    10381 gaagtgcaaa ccaaaggaat tgaagtgagt ttaaatcagc aattatccga taaattttca
    10441 atagcggctt cttatgctta cttaaaaaaa gagattactg cagataaaga tggcacgacg
    10501 attggaaaaa cgcagtgggg agtgcctcgc catcaagcat ctctttgggc aaaatataaa
    10561 ttctttgata agctgaccgc cggtgtaggt gtacgctata tgggaacgac ttttggcgat
    10621 aaccaaaata cttttaccgt accggcatac acactttacg atatgatgct agcttatgat
    10681 tttatgccta acttaaactt acagctcaac gcacaaaacc tgacgaataa aaaatatgtc
    10741 gcaagctgtg ccaataattt ttcctgtttc tatggaaaag atcgcaattt aagtgcaacg
    10801 ttaaactatc atttttaatc tcaacagccc tcaaatgagg gcttaaactt ttgcaaaaaa
    10861 tatgaaaaaa acgaccgctt gtattcttac ttttttggtt tcatctgtgc tttatgctaa
    10921 caatataacc attgagctta aacagaatga ttttgtgcaa ggcaaattga ttcagaaggc
    10981 tcaacagcca ctttccttgt cgattatttt tcctgaccaa agctctcgcc tgctggctca
    11041 aaatgtcttt ggtgaacaag attttatgtt taaatcagaa ctaatcggca cagctacttt
    11101 ttctattcta gcgaatggtg caaccgtttc agaccaagat tttaccttaa cgattgagcg
    11161 gcatattcca atctcggcac aaattgctcc acctaaagta attgaaaata cacagcttga
    11221 agaactcagc caaaaaattg caaaaaatcc agaaaaacag accgctttaa ttaacgattt
    11281 ttgggataaa gcaaaacaag ccggcacacc attgattgaa ccattggacg aacagcaaag
    11341 ccgtgtaact tttttatggc gtggagcaac gaaaaatgcc cgtatttggg gcggtgtgag
    11401 tactgaacac gattttatgc aacgctttgg tgaaacggat atatggtata aaagttatat
    11461 agtgcccaat gacactttag tggaatacaa attagctcca gatgtgccga cattgcccgt
    11521 tgatgagaat acccaacgca gagcgttact ggctacggct caagccgatc cactcaataa
    11581 aacagcatac ttcgagaaaa tcggacaaaa tattcataat accgataaat tcaactacgc
    11641 ttcgctactt aaattgccaa acgcacctac tcaatctttt ttgactgaag ctccaaatat
    11701 tgcaaaaggt aaactgcagc agttgatttt tgagagtgca acactcggca ataaacacag
    11761 attattcgtc tatctgcctg acggttttag tgcagaaaaa aactatgcgg ttctctattt
    11821 atttgatggt gttgaatata ccgaacgagt gccaactaaa accattttag ataatatgat
    11881 cgctcagaaa gtgattctgc ctactgtagc ggtgtttatc gaaaatccat cgagtgaatc
    11941 aagacgtgtc gagctgcctg ccaatcccat atttacgcaa gtattggcaa aagaacttgt
    12001 accttttgtt gaaaaacagc tcaatataaa aacaaaggag cgaattattg gcggctctag
    12061 ctatggcggg ctatcctctg cttacaccgt actcaactat cctaatgtat ttagtaaagc
    12121 attgattcta tccggttcat tttggtggca acccaaaggc acacctagtg aacaaagcca
    12181 ctatattgct caacaattta tccaaaaaga aaaattacca ctctgttttt tcatcagtgc
    12241 aggtttttat gaaagcggga aatcggctat ttgtaagcgg tcgaattatt ttgcatagaa
    12301 ttacactcaa ttttgcatag ataaaaatta aaaactatgc aaaataattg tagaagatca
    12361 aacctaatct gacagtcccc cgttttaaat taccgtgtct gtcagattaa tttgagctta
    12421 aattcttttc cacccaaacg cgtctatttt gattcagcaa tgcttcaaca ccaccttgct
    12481 caaccgcttg ttgataacga tagaatgtat ctcggctcat tcccattact ttgcaggctt
    12541 gagaaatatt acccagttct tctgctaaat ttaataaacc gctcttgtgt ttaatgagag
    12601 ggttgttaga at
//
LOCUS       DANLRW010000077        11969 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.077, whole genome shotgun sequence.
ACCESSION   DANLRW010000077 DANLRW010000000
VERSION     DANLRW010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11969
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.077"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(16..1149)
                     /locus_tag="PXA71_001788"
     CDS             complement(16..1149)
                     /locus_tag="PXA71_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDL5105876.1"
                     /translation="MKTIKIGLVGTGYIGRCHAIAYAQAPTLFPLKGKIQLEYLAEIN
                     QALADQKAREFGFQRATDDWRKLVTDPNVDVVDICTPNFLHKEIALEAIKHGKHVYSE
                     KPLALTAQDAKEMVIAAQQAGVKTLVGFNYIKNPTTQLARQIIQNGEIGEVVHFYGTH
                     NEDYLANPNTPIDWHCYKAKAGLGTLGDLAAHIVSIAHYLVGSDIERVIGDMQTVIEE
                     RPSPHNPAEKIKVENEDQASSLIRFANGVMGTLESSRISCGRKMGLTYVVTGTKGTLS
                     YTQERMAELKLYLHDDDKSRQGFKTILVGPEHPDYAAFCVSAGHGIGFNDQKAVEIRD
                     LINGIAADDPMYPDFEEGYKISRVLEAIAKSAEEKRWVEVSEI"
     gene            complement(1280..2308)
                     /locus_tag="PXA71_001789"
     CDS             complement(1280..2308)
                     /locus_tag="PXA71_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5105877.1"
                     /translation="MTTQFLKNMGMVDDKGKIDFIAFFERFGVLIFLILLIIFFTSQN
                     GAFLSQRNIYNVLTEVSIFGIMAVGMTFVILTAGIDLSVGSILAVTAMFAAYIIKGDN
                     TVTLEAGAWGGMSWLIGLSICLGLGTFIGWLHGLGVTKLKLPPFIITLGGMTIWRGLT
                     LVLNNGSPIAGFDEGYRWWGRGDILGVPVPVVIFAVVAIIGYFALHKTRWGRYVYSVG
                     GNPEAARLAGVNINRTLVSVYVVIGALAGLAGFILSARLGSAESVAGVSFELRVIASV
                     VIGGTSLMGGYGRVTGTIIGSIIMGVLINGLVLMDVSAYYQQIIMGLIIILAVAFDTY
                     AKSRRGAL"
     gene            complement(2320..3864)
                     /locus_tag="PXA71_001790"
     CDS             complement(2320..3864)
                     /locus_tag="PXA71_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HDL5105878.1"
                     /translation="MSTPLLEVKDLTKSFSGVMALNGVKLTVGKGEVHALLGENGAGK
                     STLLKALSGAQPQTSGEIIFNGETLSLSDSPFDRQLKGIVTIYQEFNLLPNMTVAENF
                     FLGREPVKGLFVNEKAVNEEAQLVLDNLGLNIKPDTQVSRLSVAQQQMVEIARAMTLN
                     AKLIIMDEPSAALSDKEVETLHQIVRDLKSRGISVIYVTHRLNEVFALCDRFTVFQDG
                     RYSGEGEVKNVNVDQIIKMMVGREVAFTRRPPEETHHTHRPIRLAVKNLHREKPAFDP
                     HGIALHGVSFNIHEGEVLGIAGLVGAGRTEIARCLFGVENYTADEISLDGKPYAATSP
                     LDALEKGVALVPEDRKKEGLVLGLPIKTNMTLPILSKLLKGNLFVDNQKEDDLIETYR
                     QALRIKMASSELEARKLSGGNQQKVILARCMALNPKVLIVDEPTRGIDVGAKSEVHQV
                     LFDMAKQGVAVLVISSDLPEIMAISDRIITLSEGRVTGEIHGDDATEEKLMSMMAVGV
                     QRKAAA"
     gene            complement(3915..4853)
                     /locus_tag="PXA71_001791"
     CDS             complement(3915..4853)
                     /locus_tag="PXA71_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HDL5105879.1"
                     /translation="MKKRIKFVLSALTLGLAMNSFAKDELVVFSLPNLSSPFEVQLQK
                     VAVETSKKLEIKLQVLDGQSSSTKQASDLENAITRGAKGIIISPNDVNAISGAVEEII
                     KEKIPAATLDRKVESSKPVPHFGANNYTGGQEVAKAVKAKYPNGAKIILLTGQPGSTS
                     NIERTKGIRDELAAGGDKYKIVVDQTGNWLRSEGLRIIESVLPTLKEKPEVIISANDD
                     MALGAIEALRSQGLKAGDILVTGFDSTPEALARVKDGWLYLTADQRPSFAVSTALEQV
                     VGNIRESKEVSGADYPPKIILKDNLQEAERFAEISE"
     gene            complement(5185..6696)
                     /locus_tag="PXA71_001792"
     CDS             complement(5185..6696)
                     /locus_tag="PXA71_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL5105880.1"
                     /translation="MSQFVQNFINGAVVESQSQRVTSVFNPATGEETKKVKLSLPNEV
                     DAAIAAADQAFKSWSQQSPLRRARILFKFKELLEANFDELARLISSEHGKIYSDAIGE
                     LTRGLEVVEFATGIPHLQKGEFSANAGRGIDIHSIQQPLGVVAGITPFNFPAMVPMWM
                     FPVALACGNTFVLKPSEKDPSVSIRLAELLKEAGLPDGVFNVVQGDKEAVDILLTDSR
                     IQAVSFVGSTAIAQYIYEKGSANGKRVQALGGAKNHALIMPDADVQGTINALLGAAFG
                     AAGERCMALSVAVVVGDELADKIIEELIPKVKALKIGSGLLPQGVLENDMGPVISKEH
                     KAKIESYIDQGVAQGAKLCVDGRGYKVEGFENGYFVGGTLFDNVTPEMTIWQDEIFGP
                     VLSVVRVKDYAEGIALINSHQYGNGSAIFTADGDSARQFTQDVQAGMVGVNIPIPVPM
                     AFHCFGGWKASIFGPLNVYGTDGVRFYTRMKTITTRWPDSSVRSQAAFNFPTL"
     gene            6915..7739
                     /gene="iolB"
                     /locus_tag="PXA71_001793"
     CDS             6915..7739
                     /gene="iolB"
                     /locus_tag="PXA71_001793"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HDL5105881.1"
                     /translation="MSSPLLSKPNFNQHEGLIQHITPENAQWEYVGFDVYQLSKQQIT
                     LESGENELCLVFVTGFGSVYVDDYAFENIGNRTTPFEKIPPYAVYIPPHKSVLVKTEL
                     NLELAVCKAPSQGNYPVRLISPNHIGVEKRGFGNNQRLVHNILPETEAADSLLVVEVF
                     TDEGNTSSYPSHKHDDKHSTEETYLEETYYHRFDPPQGFAMQRVYTDDRTLDECMAVY
                     DKNVVKVPRGYHPVATIAGYNNYYLNVMAGPVRKWKFTWEQDHLWVNSETYKAKFE"
     gene            complement(7815..9266)
                     /locus_tag="PXA71_001794"
     CDS             complement(7815..9266)
                     /locus_tag="PXA71_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDL5105882.1"
                     /translation="MPNHKFLLLRFQAYINGKFVSSQNGKTFTVQNPTNGEKIGEVAD
                     LGTEETAQAIEAAAVAQKKWQALLPKERSVILRKWFELIMQNQEELAQILSLEQGKPL
                     AESRGEIAYGASFIEWFAEESKRIYGDVLPQDKAGRRLFVTKQPIGVVAAITPWNFPN
                     AMITRKAAPALAAGCAIVIKPAAETPLSALALAQLADQAGIPKGVFNIITSSDVEGVG
                     RELSTNPTVRKLTFTGSTRVGKILMQQSAGTVKKLALELGGNAPAIVFDDADLDTAVE
                     GVFASKFRNGGQTCVCANRIYVQAGIYEQFLAKLSEKVAQIKLGSPFEEEVTIGALIS
                     ERAVEKVESHINDALSLGAELVLGGERHALGGTFFQPTILKNVTQAMKVAREETFAPL
                     APIFKFETEEEVIQWANDTEFGLAAYLFSQNIGRIWRVSEQLEYGIVGINEGIISNEI
                     APFGGWKESGLGREGSKYGIEEFLEIKYLCMKV"
     gene            complement(9444..10754)
                     /locus_tag="PXA71_001795"
     CDS             complement(9444..10754)
                     /locus_tag="PXA71_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDL5105883.1"
                     /translation="MIYAEIFVVLAAIYLGLRSGGLGIGLYGGLGLAILTLGFGLPMG
                     SIPVDVMLIIMTVVIGAAVLQAVGGMDLLVRYAEVLMRKNPKYINFIAPMITWLMTIM
                     AGTGFIVFSTLPVIAEVAKESGIRPSRALAGSVVSSQLAIAGSPLSAAMAAMIAVMEN
                     NSVTFFQVIAVCLPVSFIASMVAAFVASKQGCELQNDVVYLERLKAGIVSPSRKLASE
                     STYSKGAKLSIGIFLLATVLVVLLAAVPGLKPVYENGKSMSTRDIIIVMMLASSCLMM
                     LVGKIKPDTIVASPIFRSGMTSIAVIIGIVTLGMTFVDAHLIEIKASIGNILTEYPML
                     LAVVLFFTCALLYSQGSTSALIIPLAVSLGIPNWAILASFIAITGIFILPTYPTSLAA
                     MELDTTGSTRAGKYIIDHPFMLPALVGVAVGLAFGFVWAPMIVS"
     gene            complement(10770..11465)
                     /locus_tag="PXA71_001796"
     CDS             complement(10770..11465)
                     /locus_tag="PXA71_001796"
                     /EC_number="5.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HDL5105884.1"
                     /translation="MARNIIGILGGMGPAATADMFQKFIRLTPADCDQAHIPLLISSI
                     PDIPDRTRYILANGENPAPVMEKYIEGLESAGATCIIIACNTAHYWFEHLKAKSQVEM
                     LSMIDCVVDEVLKCGKWRVGLLATDATLAVDLYKKQLEAQGLTFICPTENGQKAVMDS
                     IYLLKSGELEKATELMLQQRDELIRLGAEVIILGCTEVPIILAQEIEREPMRYVDSTL
                     VLVKKAIDWYQTH"
     gene            11681..>11969
                     /locus_tag="PXA71_001797"
     CDS             11681..>11969
                     /locus_tag="PXA71_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5105885.1"
                     /translation="MKNIETKWLEDFLTLEECRHFSQAAEKRNLSQSAFSRRILALEE
                     VVGVKLFDRTSIPLQLTEQGKLFHSQTRNLLQQLQNNLDELLGHNCNLPNIK"
BASE COUNT         3450 a         2778 c         2355 g         3386 t
ORIGIN      
        1 attttaatgt aattattaaa tctcactcac ctccacccac cttttctcct ccgccgattt
       61 tgctatcgct tccaatactc tggagatttt atagccttct tcaaaatcgg gatacatcgg
      121 gtcatcagcg gcgatgccgt tgatgaggtc acggatttcc accgcttttt ggtcgttaaa
      181 accgatgccg tgaccggcac tcacacaaaa agcagcgtag tcgggatgtt ccgggccgac
      241 taaaatggtt ttgaatcctt ggcgggattt atcgtcatcg tgcaaataga gtttgagttc
      301 tgccattcgt tcttgggtat agctgagcgt gcctttagta cctgtaacga cataggtcag
      361 ccccatttta cgcccgcagg aaatgcggga gctttcgagc gtgcccatta ccccattagc
      421 aaatcgtatg agactacttg cctgatcttc gttttctact ttgatttttt ctgctggatt
      481 gtgcggacta gggcgttctt caatcactgt ttgcatatcg ccgataacac gctcaatgtc
      541 tgaaccaacc aaatagtgtg cgatactgac aatatgtgcg gctaaatctc ccaacgtacc
      601 aagcccggct ttggctttgt agcagtgcca atcaatcggg gtattagggt tggcgagata
      661 atcttcgtta tgcgtgccgt agaaatgcac cacctcacca atttcgccgt tttgaataat
      721 ttggcgagcc agttgggtgg ttggattttt gatatagttg aaaccgacca aggttttaac
      781 tcccgcttgt tgagcggcaa tcaccatttc tttggcatct tgggcggtga gtgcaagcgg
      841 tttttctgaa tagacgtgtt tgccgtgttt aatcgcttct aaggcaattt ctttgtgcag
      901 aaaatttggt gtacaaatgt ccaccacatc gacattcgga tcggtaacca attttcgcca
      961 atcgtcagta gcacgctgaa agccaaattc tcgggctttt tgatcggcta atgcttggtt
     1021 gatttcggca aggtattcca gttggatttt gcctttaagt ggaaacaggg ttggggcttg
     1081 agcgtaggca atggcgtggc agcgaccgat atagccggtg ccaactaagc cgattttgat
     1141 ggttttcata atactatccc agtagggtgc gtttgctaac gcaccattag aattttcagt
     1201 gcattggcaa acgcacccta taagaaagcg gtctggtttt gcaaaatttt tacaaaatca
     1261 gaccgcttgt gttagctatc tataatgctc ctcgtctgct cttcgcatag gtgtcgaagg
     1321 caacggcaag gatgatgatt aagcccataa tgatttgttg gtagtaagcg gaaacgtcca
     1381 ttagtactaa accgttaatc aatacaccca taataatgga gccgatgatg gtgcctgtga
     1441 ctcgtccgta tccccccatt agggaagttc cgccgataac cactgaggca attacacgta
     1501 gctcaaaaga aacgccggca acggattcgg cactgcctaa acgggcggag agaatgaaac
     1561 cggcaagtcc tgccaatgct ccgatcacca cataaacact gactaaggta cggttaatat
     1621 tcacaccggc taaacgggct gcttccggat tgccacctac cgagtacaca tagcgtcccc
     1681 agcgggtttt atgcaatgcg aagtaaccga taatggcgac tacggcaaaa atcactaccg
     1741 gcaccggtac gcctaaaata tcgccacgtc cccaccagcg gtaaccttcg tcaaatccgg
     1801 caattggcga gccgttattt aacacaagtg ttaaaccacg ccaaattgtc ataccgccaa
     1861 gcgtgataat aaacggtggc agtttgagtt tagtgacgcc taagccgtgt aaccaaccaa
     1921 tgaaagtgcc taaacctaaa cagatactca aacctatcag ccagctcatt ccgccccaag
     1981 caccggcttc tagcgttacc gtattatcgc ctttgataat ataggccgcg aacattgcgg
     2041 taacagcaag gattgagccg acagagagat cgatccctgc agttaagatg acgaaagtca
     2101 ttcctaccgc cataatgccg aaaatcgaca cttcggttaa aacgttatag atgttgcgtt
     2161 gcgataaaaa tgccccgttt tgtgaagtga agaaaataat cagtaagatc aagaaaatca
     2221 gtacgccgaa acgttcaaag aaggcgataa aatcgatttt tcctttgtca tcgaccatac
     2281 ccatattttt tagaaattgc gttgtcatac aaacctctct tatgctgccg ctttacgctg
     2341 aacgccaaca gccatcattg acattaattt ttcttcggtg gcatcatcgc cgtgaatttc
     2401 gccagttacc cgaccttcgg aaagagtgat aatgcggtcg gaaatcgcca taatttccgg
     2461 taaatcggag gaaatcacta ataccgcaac accttgtttt gccatatcaa acagcacttg
     2521 gtgaacctca gattttgccc caacatcaat acctcgtgtc ggctcatcaa caattagtac
     2581 tttcgggttg agtgccatac aacgggctaa aatcactttt tgctgattac cacccgataa
     2641 tttgcgggct tcaagttcgc tacttgccat tttgatgcgt aacgcttggc ggtaggtttc
     2701 gattaaatca tcttcttttt gattatcgac aaacaagtta cccttcaata atttgcttaa
     2761 aatcggcagg gtcatattgg ttttaatcgg taaaccgaga actaagccct cttttttgcg
     2821 atcttccggc acaagggcaa cccctttttc caaagcatct aacggcgagg tggcagcata
     2881 aggcttaccg tctaggctga tttcatcagc cgtataattt tctaccccaa acaagcaacg
     2941 ggcaatttca gttcgccctg cgccaactaa gccggcgatc cctaatactt caccctcgtg
     3001 aatgttaaaa gagacaccgt ggagagcaat gccgtgtgga tcgaatgccg gtttttcccg
     3061 atgcagattt ttcacagcta aacgtattgg tcggtgggta tggtgagtct cttctggtgg
     3121 acggcgagta aaggcaactt cacgtcctac catcatttta ataatttgat cgacattcac
     3181 atttttgact tcaccctcac cagaatagcg cccgtcttgg aaaacggtga aacggtcgca
     3241 tagggcaaac acttcgttta agcggtgggt cacataaatc acgctaatgc cacggctttt
     3301 taaatcacgc acgatttggt gtagtgtttc cacttcttta tcacttaagg cagcggacgg
     3361 ttcgtccata ataatcaact tagcgtttaa ggtcattgca cgggcaatct cgaccatctg
     3421 ctgttgtgcc acacttaaac gggaaacttg ggtgtcaggt ttgatattta agccgagatt
     3481 atccagcact aattgtgctt cctcattcac cgctttttca ttgacgaata aacctttcac
     3541 cggctctctg cccaaaaaga aattttcagc aaccgtcata ttcggtaaca agttaaattc
     3601 ttgataaatc gttacgatgc ctttgagttg gcgatcaaac ggggaatcgc tcaaacttaa
     3661 ggtttcaccg ttaaagataa tttcgccact tgtttgtggc tgagcgcctg aaagtgcttt
     3721 taataaggtc gattttcctg caccgttttc acccaacaat gcgtgaactt cgccttttcc
     3781 cacagtcagt ttcacgccat tgagtgccat aacaccagag aaactttttg tcagatcttt
     3841 cacttcaagt aagggagtag acatacaacc tccgtaaaaa aacgccctcc ggcctcagcc
     3901 ggaaggcaga taaattattc gctgatttct gcaaaacgtt ctgcttcttg cagattatct
     3961 ttcaggataa tttttggcgg atagtccgca ccgctcactt ctttgctctc acggatattg
     4021 ccaaccactt gctctaatgc ggtgcttacc gcaaaacttg ggcgttggtc agcggtgaga
     4081 tacaaccagc catctttcac acgtgcaaga gcctcagggg ttgagtcaaa gccggttact
     4141 aaaatatcgc cggctttcaa accttggcta cgcaatgctt caatcgcacc aagtgccata
     4201 tcgtcattcg ctgaaataat cacttctggt ttctctttta aggttggtaa cacactttca
     4261 ataatgcgta atccctcaga acggagccag ttaccggttt gatcaaccac gattttatat
     4321 ttgtcaccac cggcagctaa ttcatcacga atacctttgg tacgttcaat gttagaggtt
     4381 gaacccggct ggccggttaa aagaataatt tttgccccat tcgggtattt ggctttcact
     4441 gcttttgcga cttcttgacc gcctgtgtag ttatttgccc caaagtgtgg aaccggctta
     4501 ctgctttcaa cttttcggtc taatgtcgca gcaggaattt tttctttgat aatttcttcc
     4561 actgcacctg aaatcgcatt cacatcattc ggggaaatga taatgccttt agcaccacgg
     4621 gtaattgcat tttctaagtc agaagcctgc ttagtagaag aactttgccc gtctaatact
     4681 tgcaatttga tctccaactt tttactggtt tctaccgcta ctttttgtag ttgaacttca
     4741 aacgggctgg ataggttcgg taagctaaat accacaagct catctttcgc aaagctgttc
     4801 attgctaagc ctaacgttaa agcactcaat acaaatttaa tacgcttttt cattacaaaa
     4861 tcctcttttt aagatgggaa ttgacggcga atattgccaa tgttacttca aactgcgaag
     4921 gaaacttaag tcttatttca ataataaacc tcaatgaaat aaatttttca atttagaata
     4981 tatcattcaa aattttccaa accaaatgct ttgtttcaaa tttgttacgt agatcacatt
     5041 tttaggaaga gataaatgca agcggtcaaa acaggtcgct tttttgcaaa aatttgaata
     5101 aaaatgaccg cttgtgagat gaaaaccaat aaaaaagcgg tgatttctca ccgctaaaca
     5161 ctcaaaaaag aaatgtactc gttattataa ggttgggaaa ttaaatgccg cttggctacg
     5221 caccgagctg tccggccaac gggttgtgat ggttttcata cgggtgtaga aacgcacgcc
     5281 gtctgtgccg tacacattga gaggcccgaa aatagaggct ttccaaccgc caaagcagtg
     5341 gaacgccatt ggcacaggaa ttggaatatt cacgcccacc ataccggctt gtacatcttg
     5401 ggtgaattga cgtgctgaat cgccatctgc ggtgaaaatt gcactaccat tgccgtattg
     5461 gtgactgtta atgagtgcga tcccttcggc ataatctttc acacgcacaa cagagagaac
     5521 cggtccgaag atttcatctt gccagatggt catttcaggt gtcacgttat caaacagcgt
     5581 acctccgaca aagtaaccgt tttcaaaccc ttcgacttta tagcctcgac catcgacaca
     5641 gagtttcgcc ccctgtgcca ccccttgatc gatatagctc tcaattttgg ctttatgctc
     5701 tttggaaatc accggcccca tatcattttc aagcacgcct tgtggtagta agcctgaacc
     5761 gattttcaat gctttgacct taggaattag ctcttcaatg attttatcgg ctaattcatc
     5821 accaacaact accgctaccg atagtgccat acaacgttca ccggctgcac caaatgctgc
     5881 gcccagtaag gcattaattg tgccttgtac atcagcatcc ggcataatca aagcgtggtt
     5941 tttcgcaccg cccaaggctt gaacccgttt gccgtttgct gagcctttct cataaatata
     6001 ttgtgcaatt gcagttgagc cgacaaaact caccgcctga atgcgagagt cggttaaaag
     6061 aatatctacc gcttctttat caccttgcac cacattgaat acaccgtccg gcaagccggc
     6121 ttcttttaat aattctgcca agcgaataga cacacttggg tctttttcag acggttttaa
     6181 aacgaaagtg ttaccgcaag caagtgccac tgggaacatc cacatcggta ccattgccgg
     6241 gaaattgaac ggggtaatgc ctgccactac gcccaacggt tgctggattg agtgaatatc
     6301 aatgccacgc cctgcattgg cggagaactc acctttttgt aagtgtggaa taccagtggc
     6361 aaattccacc acttctaaac cacgggttaa ttcgccaatc gcatcggaat agattttgcc
     6421 gtgttctgag ctgattaaac gagccaactc atcaaagttt gcttccaata actctttgaa
     6481 tttaaataaa attctggcac ggcgtagtgg tgattgttgt gaccagcttt tgaaagcctg
     6541 atcggccgct gcaattgccg catcgacttc gtttggcagg cttaatttga cttttttggt
     6601 ctcttcaccg gttgcgggat taaataccga ggtaacacgc tggctttggc tttcaacgac
     6661 tgcaccgtta ataaaatttt ggacaaattg gctcattgga ggctccttat caactgattg
     6721 agaggaaaaa cggataaaat acagccgata aactaccgct aaaaatggaa aatatcaata
     6781 cataatacta aaaaatgaaa attttatttc atttttgtga tctaagtagc aagtttacag
     6841 attgccggta ttaaaatgag acaaaatttc gtatagtttg aaagcgtatt ccatttcgtt
     6901 aagcgaggtt tcctatgtct agtccattat tgtctaaacc caatttcaac caacatgaag
     6961 ggttaattca gcacattacc cctgaaaatg cacagtggga atatgttgga tttgatgttt
     7021 atcagctcag taagcaacaa attacgctgg aaagtggtga aaatgaactt tgtctagtct
     7081 ttgtgaccgg ttttggctct gtctatgttg atgattatgc ttttgaaaat atcggcaacc
     7141 gtaccacgcc atttgaaaaa attccgcctt atgcggtcta tatcccgcca cacaaaagcg
     7201 tgttggttaa aaccgaactc aatttagaat tggcagtgtg caaagcacca agtcagggta
     7261 attatccggt gcgtttgatt agcccgaacc atatcggtgt ggaaaaacgg ggctttggca
     7321 acaatcaacg cttggtgcat aatattctgc cggaaaccga agcagccgac agtttgctgg
     7381 tggtggaagt ctttaccgat gaaggcaata ccagttccta cccaagccac aagcacgatg
     7441 acaaacactc taccgaagaa acctatttgg aagagaccta ctaccaccgc ttcgatccac
     7501 cacaaggttt tgcaatgcaa cgggtttata ccgatgatcg cacacttgat gaatgtatgg
     7561 cggtgtatga taaaaatgtg gttaaagtgc ctcgtggcta ccaccctgtt gctaccattg
     7621 ccggctataa caactactac ctaaatgtta tggcagggcc ggtacgcaaa tggaaattta
     7681 cttgggaaca agatcatctt tgggtgaaca gtgaaaccta taaagccaaa tttgagtaat
     7741 gcaagcggtc tttttccacc aattttttac aaaataaggg attaaaaatg ggacgctttt
     7801 ggcgtcccat tcggttatac tttcatacaa agatatttta tttctaaaaa ctcttcaata
     7861 ccgtacttcg aaccttcccg cccaagtcca gactctttcc agccgccgaa cggagcgatt
     7921 tcgttactga tgatcccctc attaatcccg acaatgccat attccaactg ctccgatact
     7981 cgccaaattc gcccgatatt ttggctgaat aagtaagccg ccaaaccaaa ctcagtatca
     8041 ttcgcccact ggataacctc ttcttcggtt tcaaatttga aaatcggggc aaggggagca
     8101 aaggtttcct cacgagccac tttcatcgct tgagtgacat ttttcagaat ggttggctgg
     8161 aagaatgtgc cacccagtgc gtggcgttca ccgcctaaca ccagttctgc cccaagtgaa
     8221 agggcatcgt taatgtggct ttcgactttt tccaccgctc gttcactaat tagtgcacct
     8281 atcgtgacct cttcctcaaa tggcgagcca agcttgattt gagccacttt ctcactcaat
     8341 tttgcaagaa attgctcata aatgcccgct tgcacataaa ttcggttagc acagacgcag
     8401 gtttgcccac cgttacggaa tttagaggca aacacgccct caaccgctgt atctagatcc
     8461 gcatcatcaa acacaatcgc cggtgcatta ccgcctagct ccaatgccaa tttttttacc
     8521 gtccctgccg attgttgcat taaaattttg ccgacacggg tggagccggt aaaggtgagt
     8581 ttgcgtacgg tcggattagt gctcaactcc cgccctacac cttcgacatc gctactggta
     8641 ataatgttaa ataccccttt gggaatacct gcttgatccg ctaattgggc taatgctaag
     8701 gcagaaagcg gggtttctgc cgccggttta atcacaatcg cacaacctgc cgctaacgcc
     8761 ggtgccgctt tacgggtaat cattgcattt gggaaattcc acggtgtaat tgctgccacc
     8821 acgccaatgg gttgtttagt cacaaacaag cggcgaccgg ctttatcttg tggcaagaca
     8881 tcgccataaa tccgcttgct ttcttcggca aaccactcga taaaactggc tccataggca
     8941 atctcgcctc gactttctgc caatggttta ccctgttcta gacttaaaat ctgggcgagt
     9001 tcttcttggt tttgcataat cagctcaaac catttacgca aaatcacgga acgctctttg
     9061 ggcaataatg cctgccattt tttctgggca actgcggctg cttcaatcgc ttgagcggtt
     9121 tcttccgtgc ctaaatcagc cacctcaccg attttctcac cattagtcgg attctgtacc
     9181 gtaaaggttt tcccattttg gcttgaaaca aatttaccgt taatataggc ttggaaacgg
     9241 agtagcaaaa atttgtgatt tggcataatc actccttgaa tggttaaaaa gagaacaata
     9301 ttgactataa tccaatttca gtaaagagaa aagagctgaa aaataacttt ttactcaata
     9361 ataaagcacc ttagacaagc gttcttctaa ggtgcagcca tttattattg agaattaact
     9421 taaattctct acatatttaa taattaagat acaatcattg gagcccatac gaatccaaaa
     9481 gcaagcccaa cagcaacccc aactaaagct ggaagcataa acggatgatc tataatatat
     9541 ttgccagcac gagttgaacc cgtagtatct aattccatcg ctgctaatga agttgggtag
     9601 gttggcagga taaaaatgcc tgtaattgca atgaaagaag ccaaaattgc ccagttaggg
     9661 atccccaagc ttactgctaa tggaataata agagcagaag ttgacccttg tgaataaagt
     9721 aatgcacaag taaaaaagag tactacagct aacaacattg gatattcagt taaaatattt
     9781 ccaatagagg ctttaatttc tattaaatgt gcatcgacaa aagtcatacc taatgtaaca
     9841 atcccgataa ttaccgcaat agaagtcatt cctgagcgga aaattggact agccacaatc
     9901 gtatcaggtt taatttttcc taccaacatc attaagcacg aagaggctaa catcatcaca
     9961 ataattatat ctcgggtact cattgacttc ccattttcat atactggctt taaccctgga
    10021 acggctgcaa gtagaacaac caatacagtt gctagtaaga aaatgccaat cgatagtttt
    10081 gctccttttg aataggtaga ttcactcgct aacttacgag atgggctgac gattcctgct
    10141 tttaaacgtt ctaaataaac aacatcattt tgcaattcac agccctgctt agaagcaaca
    10201 aatgcagcaa ccatagaggc aataaaagaa acaggtaagc atactgctat tacttgaaaa
    10261 aatgtaacac tgttgttttc cattactgct atcatagccg ccattgcagc actcaatgga
    10321 gaacctgcaa tagctaattg agaagacaca accgagccgg ctaatgctct tgaagggcga
    10381 ataccactct cttttgccac ttctgcaatc acaggtaagg tggaaaagac gataaaacct
    10441 gtaccagcca taatcgtcat taaccaagta atcatcggtg caataaagtt aatatattta
    10501 ggatttttac gcatcaatac ttccgcataa cgaacaagta aatccatacc tcctactgct
    10561 tgtaacacag cagcacctat tacaacagtc ataataatca gcattacatc aactggaata
    10621 gaacccatag gtaaaccaaa acctagagtt agaatcgcaa gccctaaacc accatatagt
    10681 cctattccta agcccccaga acgcagtcct aaatagattg cagcaagtac cacaaagatt
    10741 tctgcataaa tcatatccat ctccttaaat taatgagttt gataccaatc aattgctttt
    10801 ttaaccaata ccaacgttga atctacataa cgcattggct cacgctctat ttcttgagct
    10861 aaaataatag gtacttctgt acaacctaaa ataattactt ctgcacctaa acgaatgagt
    10921 tcatcacgtt gttgtaacat tagctctgtg gctttctcta actcacctga ttttaataaa
    10981 tagatactat ccattactgc cttttgacca ttttctgtcg ggcaaataaa agtcagtcct
    11041 tgtgcttcaa gctgtttttt gtataggtct accgccaaag ttgcatcagt tgccaacaat
    11101 ccaacccgcc attttccaca cttcaaaacc tcatcaacca cacaatcaat catacttagc
    11161 atctctacct gacttttggc cttcaagtgt tcaaaccaat aatgtgcagt attacatgca
    11221 ataatgatgc aggttgcccc tgcactctca agcccttcaa tatatttttc cattaccgga
    11281 gccggattct ctccatttgc taaaatatag cgagttctat ctggtatgtc gggaatagag
    11341 gaaatcaata atggaatatg agcttgatca caatcagctg gtgttaagcg gataaatttt
    11401 tggaacatat ctgctgttgc tgcaggtccc attccaccta aaatgccaat aatatttctt
    11461 gccatacact tctccttata agatttaatt tactgcgatg acttatacaa acaagttatg
    11521 caaaaaagaa atgcaataaa tcgaatcagt atgcaaaaaa tgcaacaaag ctctttatag
    11581 atagaaaaaa aatctttaaa atcaataaaa tactaatata tcaaatataa atttaatgca
    11641 tttaatgaaa tcataatgcg aaatttgcat tggttaggat atgaaaaaca tagaaacaaa
    11701 atggttagaa gatttcttaa cgctagaaga atgtcgccat ttttctcagg cagcagaaaa
    11761 aagaaatttg tcacaatctg catttagcag acgtatttta gctttagaag aagttgtggg
    11821 agtgaagtta tttgatcgta cctctattcc attacaactc acagaacaag gtaagctatt
    11881 tcattcacaa acgcgaaact tattacaaca attacagaat aatctagatg aattattagg
    11941 acataattgt aacttaccta atattaaat
//
LOCUS       DANLRW010000078        11735 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.078, whole genome shotgun sequence.
ACCESSION   DANLRW010000078 DANLRW010000000
VERSION     DANLRW010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11735
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.078"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..352
                     /locus_tag="PXA71_001798"
     CDS             <1..352
                     /locus_tag="PXA71_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105886.1"
                     /translation="FISPFEQTDRNEWKHEDIEFIYDEKISTEPPPYMEEEKFQKIIM
                     RFSKDIKIMMHNHINFIESDRFAEWILEKACVRSKTLTSFYGDKSVIRAVPPLDWSGK
                     YKYTKIGFRLCYDL"
     gene            717..1445
                     /gene="ttrB"
                     /locus_tag="PXA71_001799"
     CDS             717..1445
                     /gene="ttrB"
                     /locus_tag="PXA71_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HDL5105887.1"
                     /translation="MDLSKRSFLKELSALTVGASFVPLQSAQAFMPAWREGDENKRYA
                     MLIDLRKCIGCQACTVSCSVENATPLHSFRTTVRQYEITNGTQVVNNVVLPRLCNHCD
                     QPPCVPVCPVQATFQRKDGVVVINNEQCIGCGYCVQACPYDARFINEETKTADKCTFC
                     THRLEVGLLPACVESCVGGARVIGDLNDPKSQISQLYQAHKDDLKVLKPEAGTVPHVF
                     YVGLDDDAFVSKIDGQPMLWTGEA"
     gene            1447..2478
                     /gene="nrfD"
                     /locus_tag="PXA71_001800"
     CDS             1447..2478
                     /gene="nrfD"
                     /locus_tag="PXA71_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysulfide reductase NrfD"
                     /protein_id="HDL5105888.1"
                     /translation="MIREVLVEPQHIVWLPWIVHYFFFVGVAATAVFTAVLFAKKSLK
                     PTACELAAVTVALIGSIVAPVALTADLHQPSRILHFYTDFAWRSPMAWGAIILPLFSV
                     AVAGYFVLALAHHTRPNLPKWLAWLQLPILQNQGLLWAFRLFATLTAIGIIGYTVLET
                     YQTGTRTLWHSAWLLPIMLFSAWAVALGLTQAVCKMLFHTQTNTGLWTKLCLILTALS
                     LVGLAFSSPQATQDFAQLFNGSITAYLVGIFWLIALICNFSAKNHRLQWLGVLALIAF
                     GWLLRWVLVIQVQTIAKTNALQNPYHFDWTAVDGGLGIVSIFGLTVLVSIVVWQLILI
                     ICGGRKGEQ"
     gene            2468..5563
                     /gene="ttrA"
                     /locus_tag="PXA71_001801"
     CDS             2468..5563
                     /gene="ttrA"
                     /locus_tag="PXA71_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL5105889.1"
                     /translation="MNNKRRNLLKGGLALGGAAAFGAGYSPKVSEIAKGVMHGTSGEK
                     TRDAIHGNSLTPEYQVKDGKLLSNPEQIVCNTQCMGCWTQCGIRARVDLNTNQVIRIS
                     GNPYHPLSSDKTLPFGMPIAKAELLLAGESGIENRSTACARGAAFLEGVNSPYRITQP
                     LKRVGKRGEGKWQTISFEQLVEEIINGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGM
                     KANQLLVTFAGPEGRQPILQRFAQKSFGTINFSNHGAYCGAAYRAGSGAFMKDFDNQQ
                     HAKPDWDHAEFILFIGTSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLA
                     TQNNHWVPIKPEGDLALVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHL
                     IICEPNHPKFGQALRISDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFV
                     EQIAKLLDGSEVLVKSSMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKA
                     NAITHGGTMHSTGFYTSWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFP
                     NEVKPKGTNLARSKKAYQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQG
                     YPYFAKAWINHMANPVYGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALTDYIVP
                     DTHNFESWGFSTAWGGVPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLP
                     GFGENAIADLEGNRYPLHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPK
                     IEQTLKAEERLKVANVYCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSN
                     GEHYWGCPRYMSPRFADGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPE
                     GLVAMNRLDAEEKGIKHGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGA
                     SSYTIDGVEIPANPMIAKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKL
                     A"
     gene            5704..6549
                     /locus_tag="PXA71_001802"
     CDS             5704..6549
                     /locus_tag="PXA71_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5105890.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(6662..8059)
                     /locus_tag="PXA71_001803"
     CDS             complement(6662..8059)
                     /locus_tag="PXA71_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL5105891.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(8149..8772)
                     /gene="gmk"
                     /locus_tag="PXA71_001804"
     CDS             complement(8149..8772)
                     /gene="gmk"
                     /locus_tag="PXA71_001804"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL5105892.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            complement(8885..9358)
                     /gene="gpt"
                     /locus_tag="PXA71_001805"
     CDS             complement(8885..9358)
                     /gene="gpt"
                     /locus_tag="PXA71_001805"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL5105893.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            complement(9504..10913)
                     /locus_tag="PXA71_001806"
     CDS             complement(9504..10913)
                     /locus_tag="PXA71_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5105894.1"
                     /translation="MKKYPLLFSLFSPVVWAEKVIEHNTDPISFERQPQAVKFEQNVV
                     KNSQKPTAYQPAYSVNQNVEQQINQAILSQDWATLEPLLSRYPQTENFDPLLWHYAQA
                     ALAYAKKDHQTAVFHYRQLLAKPPSLVYPRFDLALILAEDQQFRAAEQEFKAIQAHLP
                     PELAKIARNTQVQIAENEAWQPDFYLQYTQTDNVNNASSSPIVNVNGRIFRKNADSLP
                     QSAKGVRYGLGLSKLHNVKGNHFVGLTLNYSGIYYWDNRDYREQSVSVSPNYSYRTVA
                     YRLTFSPFIEQNWLGSSRYNVQFGATLNGLRYLNSQWLVSGSFTHLQKRYFEELTASR
                     YNSYQHQLSGGVQWQAVKNGRFFANLDGVREIAREKAQSSNKWLARVGAVFQGERWAT
                     QASIGFGKRYFADKHYLFGYKRLDTEYQANLAVWNRTWHWQGIVPKLNFRYQKIDSNI
                     ADFYSRQNKEVFFTLEKLF"
     gene            complement(11109..>11735)
                     /locus_tag="PXA71_001807"
     CDS             complement(11109..>11735)
                     /locus_tag="PXA71_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin transporter"
                     /protein_id="HDL5105895.1"
                     /translation="EAERLAAEKEVDPIAIIKAKGIDDTNYGLKLGNSKETIEGKVTV
                     RTQSYLYNQPYSVVTAQAVQRNGWENGNYIDKVDGTVTVKGLKTEKLPTEGTATYSGK
                     AFNHDGAKGFNGGDLTYNVNFSKRTGSGRVEGEFGNLIVLEEGTINNTQISSTVHGNN
                     PLNLSGKYTVEFFGKNAEEIAGEIQTKANLTGEVSNFGLAGTRGDIQK"
BASE COUNT         3226 a         2691 c         2668 g         3150 t
ORIGIN      
        1 gtttatttct ccgtttgaac aaacagatag aaatgaatgg aagcatgaag atatagaatt
       61 tatatatgat gagaaaatat ctacagaacc acctccttat atggaggaag aaaaatttca
      121 aaaaataata atgaggtttt caaaagatat aaaaataatg atgcacaacc acataaactt
      181 catagaatct gacagatttg cggaatggat tcttgaaaag gcttgtgttc gctctaaaac
      241 attaaccagc ttttatggcg acaagtctgt tataagggcc gttccaccat tggattggtc
      301 aggaaaatat aaatatacca aaataggatt tagattatgc tacgatttgt agggggatat
      361 atgaagaaat acagtaatga ttctcttata aatagtattg ttatatctaa attaaaagca
      421 ggatggaaaa ttagaaaagg aaagaaacat aatatattaa ttgccccaaa ttctaggaga
      481 ttagcgatac ctagtacccc gagtgatatt aatgcgtata aaaactttag atctaaacta
      541 aaccatctta ttgcttttta attagtatca atgccctatt atctacttgt atagggcatt
      601 tcccttcatc cttgacccaa atcaactttc cccttgatat gtggaaaacc acaatacctt
      661 gccgttccct ctccgcctta gaataccttt gttattttta aatttgtggg ggaaatatgg
      721 atttaagcaa acgttccttt ttgaaagagc tttccgcctt gacggtgggg gcgagttttg
      781 tgccgttgca atcggcccag gcgtttatgc cggcttggcg tgagggcgat gagaacaaac
      841 gctatgcgat gctgattgat ttgcgtaaat gtatcggctg tcaagcgtgt accgtgagct
      901 gttcggtgga gaacgccacg ccgttgcaca gtttccgcac cacggtgcgt caatatgaaa
      961 tcaccaacgg cacgcaggtg gtgaacaatg tggtgttgcc tcgtttgtgt aaccattgcg
     1021 atcaaccgcc gtgtgtgccg gtctgcccgg tgcaggcaac ctttcaacgt aaagacggtg
     1081 tggtggtgat taacaatgag cagtgcatcg gctgtggtta ctgcgtgcaa gcctgcccgt
     1141 atgatgcccg ttttatcaat gaagagacca aaaccgccga taaatgcacc ttctgcactc
     1201 accgtttgga ggtaggtctg ctgccggcgt gcgtggaaag ttgcgtgggc ggggcaaggg
     1261 tgattggcga tttgaacgac ccgaaaagtc aaatttccca actttatcaa gcccacaaag
     1321 atgatttgaa agtcctgaaa ccggaggccg gcaccgtgcc acacgttttc tatgtggggc
     1381 tagacgatga tgcctttgtg agcaaaattg acgggcaacc aatgctctgg acgggggagg
     1441 cgtaaaatga ttcgtgaagt attagtggaa ccgcaacata tcgtctggtt gccgtggatt
     1501 gtgcattatt tcttcttcgt aggcgtggcg gcaacggcag tgtttaccgc cgtgctgttt
     1561 gcaaaaaaat cactgaaacc gaccgcttgc gagctggcgg cggtgacggt agccttgatt
     1621 ggctcgattg tcgcccctgt ggcattgact gccgacctgc accaaccgag ccgtattctg
     1681 catttctaca ccgattttgc gtggcgatct ccaatggcgt ggggagcgat tatcctgccc
     1741 ctgttcagcg tggcggtagc gggttatttt gtgctggcat tggctcacca tacccggccg
     1801 aacctgccga aatggttagc gtggctacag ttgccgatac tgcaaaatca aggcttgctt
     1861 tgggcattcc gcctgtttgc cacactcacc gctatcggca ttatcggcta caccgtgctt
     1921 gaaacctacc aaaccggcac aagaacctta tggcacagtg cgtggctgct gccgattatg
     1981 ctcttttctg cgtgggcggt ggcattgggg cttacccaag cggtctgcaa aatgctgttc
     2041 cacacccaaa ccaacacggg gctatggaca aaactctgcc tgattttaac cgcactttcg
     2101 cttgtcggac tagcattcag tagtccacaa gccacacaag attttgccca gctcttcaat
     2161 ggctcaatca ccgcttacct tgtcggcatt ttctggctaa ttgccctcat ttgcaatttt
     2221 tctgccaaaa accaccgctt gcaatggctc ggcgtgcttg ccctcatcgc tttcggctgg
     2281 ctactccgct gggtactggt gatccaagtc caaaccattg ccaaaaccaa tgccttgcaa
     2341 aatccatatc atttcgattg gacagccgtc gatggtggtt tggggattgt ctcgattttt
     2401 gggctaacgg tgctagtaag tatcgtggta tggcaactga ttttaataat ttgtggggga
     2461 agaaaaggtg aacaataaac gcagaaatct gttgaaaggc gggctggcac ttggtggggc
     2521 ggcggcgttt ggggccgggt attcgccgaa ggtgtcggag attgccaaag gggtgatgca
     2581 cggcacatcg ggcgagaaaa cccgtgatgc aattcacggt aattcgctca cgccggagta
     2641 tcaggtaaaa gacggcaaac tgctcagcaa tcctgagcaa attgtgtgca atacacagtg
     2701 tatgggctgt tggacgcagt gtggcattcg ggcgagggtg gatttgaaca ccaaccaagt
     2761 gattcgcatt tcgggcaatc cgtatcaccc gctttcctcc gacaaaaccc tgccgttcgg
     2821 tatgccgatt gccaaggcgg aactgttgct ggcgggcgaa agtggcattg aaaatcgctc
     2881 caccgcctgt gctagagggg cggcgttctt ggagggggtg aacagcccgt atcggattac
     2941 ccaaccgttg aaacgggtcg gaaaacgggg cgaaggcaag tggcagacca tcagctttga
     3001 gcagttggtg gaggaaatca tcaatggtgg caacctattt ggtgaaggcg aagtggaggg
     3061 cttgaagacg atccgcaatc tggtcgatcc gattaacccg aaacagcctg atttgggaat
     3121 gaaagcaaac cagcttttag ttacttttgc cggccccgaa ggtcgtcagc cgattttgca
     3181 acgctttgcc caaaagagct tcggcacgat caacttttcc aaccacgggg cttattgtgg
     3241 cgctgcgtac cgtgccggtt cgggtgcctt tatgaaagat tttgacaacc aacaacacgc
     3301 caagccggac tgggatcacg ctgaatttat tctgtttatc ggcacgtctc cggcacagtc
     3361 gggcaatccg tttaagcgtc aggctcgcca gcttgccaaa cgccgccctg atgacaattt
     3421 cagctatgtg gtggtttccc ctcgtttgga gatgacctcc tccctcgcca cccaaaacaa
     3481 ccattgggtg ccgattaagc ccgagggcga tttggcgttg gtaatgggaa tgttgcgttg
     3541 gattatcgaa aacgagcgtt tcaatgctga ctacctctcc cgcccaagtc tggcagcgat
     3601 ggaaaatgcc ggccacgtca gctatgccaa tgcgtcacat ctgattattt gcgaaccgaa
     3661 ccacccgaaa ttcgggcagg cgttgcggat tagcgatctg caagatgtgc aactcgaccc
     3721 cgaagagaaa gtggaagaaa acctgattgt ggtaaaagat caggcaagcg gcgaactcat
     3781 ttcagcaaaa gattgcttac aagcggtcat ttttgtcgaa caaattgcaa aactgcttga
     3841 tggctcggaa gtgttggtga aatcctcaat gcagttgctg aaagaggcga cacaagagaa
     3901 aacccttgcc gaatatagcg acatttgtgg cgtgccggtg caaaccattg aaaacttagc
     3961 gaaaaaattc acttcgcacg gtcataaagc caatgccatc actcacggcg gcacgatgca
     4021 cagcaccggt ttttatacca gttgggcgat tttgttgctg aatgcaatgg tcggtaacct
     4081 caacaaaaaa ggcggaatgg cagtagccgc aggcaaattc aaagatttcg gggacgggcc
     4141 tcgctacaat ttagcgaact tcccgaatga agtgaagcca aaaggcacga accttgcccg
     4201 cagtaaaaag gcgtaccaaa attcaagcga atttaagcag aaagtgacga agggcgaaaa
     4261 tccgtatccg gcacaagggg cgtggtatcc gttcaccggc gggcaaacta ccgagatgtt
     4321 tacctcaatg gtgcagggct atccatactt tgcgaaagcg tggatcaacc atatggcgaa
     4381 ccccgtttac ggcttaaccg ctatgaaccc gattgcgttg gagaaattaa aagatccgaa
     4441 aattctaccg ctctttgtct ctattgatgc ttttatgaac gaaaccactg cactgacgga
     4501 ctacatcgtg ccggacaccc acaactttga gagctggggc ttttcaacgg cgtggggcgg
     4561 tgtgcctcaa cgcaccagca ccgcacgcca cccgattgtg ccgtccaaaa acgccaaaac
     4621 tgccgaaggc gacaccatct gtatggagaa tttcgtgatt gcggtggcga aaaaaatggg
     4681 cttgccgggc tttggcgaaa atgcgattgc cgatttagaa ggcaaccgct atccgctcca
     4741 ccgtaccgaa gattacttcc tacgggcggc agcgaacatt gcctttgccg gtgagaaacc
     4801 tgcaccggac gccagcgagc aagatctgct gctcaccggc gtgcaacgga ttatgccgaa
     4861 aattgaacaa acgctaaaag ccgaagagcg attaaaagtg gcgaatgtgt attgcaaagg
     4921 cggacgtttt gccccacacg aaagtgcgtg gaaagaggag aatatggagt tccagtggaa
     4981 aaactgcctg caaatttgga acgaaaacgt gtataaagcc cagcaccaca gcaacggtga
     5041 acactattgg ggctgccctc gttatatgtc gccacgtttt gcggacggct ccacgctgga
     5101 gcagcactat ccgcagtcgg aatggggctt taaactgatt tcgtttaaat cgaacattat
     5161 gagcagtatt accgccccac tgttgcgtct gctctcgatc aagcctgagg gcttagtggc
     5221 gatgaaccgt ttagatgcgg aagaaaaagg cattaaacac ggcgatgtgg tgaaactcag
     5281 caccccaacc gccggcttga cggtgcagat tgtggtgttg gacggtatcg cccgaggcac
     5341 aatcggcatc gaacacggct acggtcataa acagattggg gcaagttcct acaccattga
     5401 cggcgtggaa attccagcca acccgatgat cgccaaaggg attaacctca acgacctcgg
     5461 cattatcgac cacaccaaag cggtcaaatc cccgtgggta gattgggtct gtggctcagc
     5521 ggtgagaaat ggcattccgg cgaaggtaga gaaattagcc tagccgaaca agcggttggt
     5581 tttgcagaaa aatgtgcaaa atcgaccgct tttattgatg taagggacac tgttccttat
     5641 gcaaaccagc attgcagagc gtaaaaaatc atactctgca ttttaattta ttttggagaa
     5701 cctatgactt ttgtcaaaaa aacagcactg agcctgattg caacggcact tttcgctaca
     5761 tcaagttttg ccgctgagca gagccaatac caacatattc gtaatgcaac ggcgaaaatt
     5821 gaatatgccg gcaagacgtt tttggttgat ccgtatttag cggagaaaga tcgctactta
     5881 ccgccgaatg cgaaaaaacg taatccgacc ttggatatga ctgtgagcat tgatgaagtg
     5941 ttaaatggcg tggatgcggt gatcgtaact cacactcacc acgctcactg ggacgatgta
     6001 gcacaacaac gtgtgccgaa aaatctgccg atttttgtgc agaatgccgg tgatgcccgt
     6061 ttaatccgtt cacaaggctt taccgatgtg cgtgtggtcg gcaaagatac cccgtttgaa
     6121 ggcgtaacct taacccgaac tcgtggccag cacggcaccg atgcgatgta tgcgaacccg
     6181 aaaattgccg aaatggtcgg cgatgcgatg gacgtagtga tgaaagcgga aggcaaaccg
     6241 accgtctatt tggtgggaga taccatttgg aaccacgaaa tcgaacattc gttcaacact
     6301 tacaaaccag actttgtggt gctgaatgcc ggctgtgcca aactaccaaa ctttgaaggc
     6361 agcccgatta tgtgtaccga agatgtttcc aaagcacaca aaatcgctcc acaagcgaaa
     6421 atcttaactg tgcatatgga cgccctgcca caaacctcaa tcagcagtga tcagatgcgt
     6481 gattatgtac aaaaagaggg attaaatcgt gtaactgtgc cgaaaaacgg tgatgtgatt
     6541 aagttctagt agctaaacta acattaccaa aatggtttaa gtagcaataa atagcgaagc
     6601 gggttaagcc atcaagcctt aacccacttt taccaaccat agtatatagt tttagatata
     6661 attatcttct gtatttacct gccattgctt ggtaaaccgc attctcgttg gtcaaaatcg
     6721 catattttgc atttaaaatc gccaactgag aattaagctc ggtattcagt gcggtaatcc
     6781 actcacggaa ctccgacacc ccttgttcat aacggttttt atagtatgaa ctgatacgtt
     6841 tatttttcgc attggtatct tgaaggattt ttaacgagct tctcgactgc gtataactgt
     6901 aataataacg gtcaatttca tttaaggctg aggtaatttt ttgctcatag tttaaacggg
     6961 cagtcacata atccgtttca gaaattttta cgttattttt aacccgattc caatctaaga
     7021 acggtaaatc caatttaatt aagccgttac ccacagggtt atctgccaca ttgccgatat
     7081 tggttgcact accggtaata gaaccaccga tggttaaggt tgggaaccag cttttctcgg
     7141 ttgcggttaa ggttttaaat gcactttgta agcgttgtaa cgagcctact acatcagggc
     7201 gattagcaat ggctgacact ggcacattta aatctacccc ttgcaatttc acgctcataa
     7261 tattcgggta acgaatgtta agcggagtat ttggctgaac atttaacaaa ttgcgtaatg
     7321 tttgctcggc aattttttgg ttggttttca gatcaattac actatttctg gcgtttaaga
     7381 ccgcttgttg agcctgatca accgctaaac tatcaatcgc accggcattc attttgttag
     7441 ttaaaatacg gctgatttgc tcataatggc gaatgctctc ttcggtaata cgaatcgcat
     7501 cacgatagta agctaactgg tagtaagtag tcacaaccgc attaataata gataaacggg
     7561 tagcttttaa gtcttcaatg gtggctttat gcgtccattc tgccgcactg gcggtatcgg
     7621 ctaaacgtcg ccataaatcc acagtataac ttaaattaaa tgcagcttga gctgcggttg
     7681 ttgaaacacc ggtcgaaaca ttatttgaag aagccgaacc taaaccttta gccgcagaaa
     7741 cagaacctga accactaaag gttggcacta aatttgcccc tactaaatta gcgttataca
     7801 aggctttatt gactgcaatt ccgcttttgg ctaaatcaag gttatttttg atggctaaat
     7861 caaccacacg gtttaattcc gcatccgtat agccttgcca ccattgctcg ttaatttgat
     7921 attgtttggt aatttcatca tagctttgat aggtttgctg tgcttgttgc aaagtcccgt
     7981 cattgctcat attccctgtg gtacaagccg ttacggttag agccaacgcc acagaaaatg
     8041 ctaattttga aagtttcatt acatttcctt ttgaaaataa agaggggaaa atgggcgtat
     8101 tctacccaaa aacagattgc ctttccagtt aaatgaacaa ctgttcattt aattatttaa
     8161 caaatcagta atcaaatgct gatgacgaat ttgttgcgaa cctaagctca aacgctcggc
     8221 aattaaaatc gcttttagct ctgccaatgc ctgttggaaa tcatcattaa taatcacata
     8281 atcgaactca ttgtaatggt tcatttccga caccgcctct gccatacgtt tggcaatggt
     8341 ttcagcggaa tcttgcccac gcccgattaa acgtttttcc aattctgttt ttgacggtgg
     8401 caaaataaaa acggttttca cattcggcac tttttcccga atttgtctag ccccttgcca
     8461 gtcaatatcc aaaaagacat caatgccctg ctctaggcta cgttcaatca tcggcaatga
     8521 tgtgccgtaa taattgccaa acacctccgc ccattctaaa aaataccctt gctcaatcag
     8581 ctgcttaaac tcatcgtgcg aagtgaaata ataatgcacg ccgtcctgtt ctgccggacg
     8641 aggctgacgg gtagtgtgtg aaatcgaaag ctgtacttcc gaacggggta aatccgccaa
     8701 caaggcgtta attaaggaag attttcctgc tccacttggg gcagaaataa tataaagatt
     8761 gcctaaactc attatttgta tatacctatt tgattttggg aatagggcga atgatgattc
     8821 gcccctacat ttcataggaa taaataaaaa ataatggaca actttcattg tccattacac
     8881 aaaattatct acgtgccaaa ggctgaacga aggtaatgcc taaatcccaa ggctgctcaa
     8941 tccacgtttc ttgtggaata tcaatcacat aatcatcaac caacggtgca ccgtgcggtt
     9001 tcgcaaacac ggttacaaaa cgagctttcg ggtacattct gcgaatttct tttgccgtgt
     9061 tgccggtatc cactaaatca tctaccacaa taaagccttc gccatcggta tcggctgcgt
     9121 gtaacacatt taactcacct tggctatcgt gatcgtagct ggcaatgcac actgtttcta
     9181 cgtggcgaat acccaactca cgtgctaaaa cggctgccgg aaacaagccg ccacggctca
     9241 ccgcaataat ccctttccac tgtgtggcag gtaataaatt ttctgccaac ttgcgagcgt
     9301 gcatatggaa catatcccac gtcacgacat atttttcatt tgtgtatttt tcactcatag
     9361 aaacaaccta atataaaatt gggggctacc ccgatataaa aaattgcact aggataaccc
     9421 gaaaatgctt ttttcgccat catttcattt atttttttgt gccggcagct acgcaatcgt
     9481 atgcttagca caaaaaacca acactaaaat agcttttcta aagtgaaaaa gacttccttg
     9541 ttttggcgag agtaaaaatc agcaatattg ctgtcaattt tttgataacg gaaattcagc
     9601 ttcggcacaa tgccctgcca atgccaagtg cggttccaaa ccgctaaatt ggcttgatat
     9661 tccgtgtcta accgcttata gccaaacaaa tagtgcttgt cggcaaaata tcgcttgcca
     9721 aagccgatac ttgcctgcgt tgcccagcgt tcgccttgaa aaaccgcccc cactcgagcc
     9781 agccacttat tcgagctttg tgctttttcc cgtgcaattt cacgcacgcc gtctaaattt
     9841 gcaaaaaacc gcccattttt gaccgcttgc cactgcacac cgccactgag ttggtgctga
     9901 tagctgttat aacggcttgc ggttagctcc tcaaaatacc gtttttgcaa atgggtaaaa
     9961 ctccccgaca ccaaccattg cgaattaagg taacgcaaac cgttgagtgt tgccccaaat
    10021 tgaacattat aacggctact ccccagccaa ttttgctcaa taaaaggcga aaaagtcagc
    10081 cgataagcga cggtgcggta gctataattc ggcgaaacgg atacggattg ctcacggtaa
    10141 tctcggttat cccaatagta aatcccgcta taattgagcg ttaaaccgac aaaatgattg
    10201 cctttcacgt tgtgcaattt actcaaccct aagccataac gcacgccttt tgctgattgt
    10261 ggcaaactgt ctgcattttt gcggaaaatc cgcccattta cattcacaat cggcgaagat
    10321 gaggcattat tcacgttatc tgtttgggta tattgcagat aaaaatcggg ctgccacgcc
    10381 tcattttcag caatttggac ttgagtattg cgggcaattt tagcaagttc cggcggtaaa
    10441 tgggcttgaa tagccttaaa ttcctgctct gccgcacgaa attgctgatc ttctgccaaa
    10501 atcaacgcca aatcaaaacg agggtaaacc aaactcgggg gcttagctaa cagttggcga
    10561 tagtgaaaaa ctgcggtttg atgatctttt ttcgcatagg caagtgcggc ttgcgcatag
    10621 tgccacaaca acgggtcaaa attttcagtt tgcggataac ggcttaaaag cggttcaagc
    10681 gttgcccaat cttggctgag aatcgcttgg ttaatttgct gttcaacatt ctgattgact
    10741 gaatacgcag gctgataagc ggtcggtttt tgtgaatttt ttacaacatt ttgctcaaat
    10801 ttaaccgctt gcggctgacg ctcaaaggaa atcgggtcag tgttgtgttc aatcaccttt
    10861 tctgcccata caacggggct gaacagcgaa aataaaaggg gatatttttt cataaagata
    10921 aagaaaattg gtaggggcgg acctatatgt tcgcctctac gggatttatc actctctccc
    10981 cttgtgggag agggttatta gaagctgtaa attgaaatct aaactattgt gtcttatggt
    11041 atctacaagc aatatcaaga caaatgccgt ttaatttttc gttaaacggc attgaacgtt
    11101 agaaaaggtt atttttggat atcgccacga gtgccggcaa gtccaaaatt actcacttcc
    11161 ccagtaagat ttgcttttgt ctgaatttca ccggcaattt cctctgcatt tttaccgaaa
    11221 aattcgactg tatattttcc agaaaggttt aaaggattat tgccatgtac tgttgaagaa
    11281 atctgagtat tattaatcgt cccctcttct aatacgatta agtttccaaa ttctccctca
    11341 actctacctg aaccggtacg cttagagaaa ttaacattat aggttagatc accaccatta
    11401 aaacctttag ctccatcgtg gttaaatgct tttcctgaat atgttgcagt accctctgtt
    11461 ggtaatttct ctgttttcaa tcctttaact gtaactgttc catcaacttt atcaatataa
    11521 ttaccgtttt cccagccatt tctttgaact gcttgtgctg ttactacaga atatggctga
    11581 ttatataaat aactctgtgt tctgactgtg actttaccct caatagtttc tttactatta
    11641 ccaagtttta agccgtaatt tgtatcatca ataccttttg ctttaataat agctatagga
    11701 tctacttctt tttctgctgc taaacgctcc gcttc
//
LOCUS       DANLRW010000079        11731 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.079, whole genome shotgun sequence.
ACCESSION   DANLRW010000079 DANLRW010000000
VERSION     DANLRW010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11731
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.079"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            11..502
                     /locus_tag="PXA71_001808"
     CDS             11..502
                     /locus_tag="PXA71_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5105896.1"
                     /translation="MQTKPILDACCGSRMFHFDKQNPHVLFADNRQIETTMKDSGKVR
                     HLEIKPDVLHDFTNMPYENESFWHVVFDPPHLVQGGENSWLVKKYGKLPCNWREVLKK
                     GFDECMRVLKPNGTLIFKWNETQIPVSEILKVIDCQPIYGHKSGRLNQTHWLAFVKIE
                     QSL"
     gene            528..803
                     /locus_tag="PXA71_001809"
     CDS             528..803
                     /locus_tag="PXA71_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HDL5105897.1"
                     /translation="MEQPTEFLTKDELTDLTGYRQKKRQIEWLRERHYIIQDENKYKP
                     LVLYKDVYGHPRQQYPEAQSTGKWKSPAYLMGVKNGKTTQTTESLLT"
     gene            763..1818
                     /locus_tag="PXA71_001810"
     CDS             763..1818
                     /locus_tag="PXA71_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5105898.1"
                     /translation="MGRPRKQQNRYLPENLRPKTVTRKSGKTVIYWLYRTHGKTEISL
                     GTNRNEAFIKAAQLNIERESQTARITFGLVAKRYRDEVIPQKKASTAQTDLCKIKNLL
                     LFFNDAPLEEITPQHIREYMIWRKDTPGSANNEFSMFSHIWQYAREWGYTNLPSPNIG
                     MKRYPIRKREIYVENNIFQMVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGY
                     LHIVQQKTQAKLRIEIVGKLADIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIR
                     EQAVKNNPEYANEIMAFQFRDLRAKSGTDKALSLGEEAARQQLGHTSVQMTKTYIRKA
                     PIVTPIKESVPSSKHQS"
     gene            complement(1945..3018)
                     /locus_tag="PXA71_001811"
     CDS             complement(1945..3018)
                     /locus_tag="PXA71_001811"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HDL5105899.1"
                     /translation="MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLL
                     CHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINP
                     KTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKV
                     RNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLT
                     YRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLY
                     DPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSD
                     FGHDAFLVDYDFFEPMIKAGLAK"
     gene            3286..3969
                     /locus_tag="PXA71_001812"
     CDS             3286..3969
                     /locus_tag="PXA71_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5105900.1"
                     /translation="MNQTRDRLEKLPLFHKMQQFIIKALKIIAIFPLLGIAILLVVDS
                     LTSYIVRDKIYTDSKQIPYREYAVVLGTAKFYSKDVINQYYKYRLEAAKQLVQEGKVN
                     QLLLSGDNKTPYYNEPKTMTSDLLKMGIATSKIKQDYAGYTTFYSIIRAKKVYKLPPF
                     TIISQKFHCERALFIAKFRDIDAICYAATYPEGAYQVRMREILARSAMVFSLLIGKEP
                     ESLEDIRSK"
     gene            complement(4006..4845)
                     /gene="purU"
                     /locus_tag="PXA71_001813"
     CDS             complement(4006..4845)
                     /gene="purU"
                     /locus_tag="PXA71_001813"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HDL5105901.1"
                     /translation="MLQQHKILLTECPDDTGLVAKITNICYKHQLNIIKNSEFVENET
                     KRFFMRTELNGIFNDETLLTDLKFTLPEGSSYKLLPKQRKRIVILVTKEAHCLGDLLM
                     KNYYGGLDVEIAAVIGNHETLKSLVERFDIPFHLVSHENLTRVEHDKLLAEKIDEYSP
                     DYIVLAKYMRVLNPEFVARYPNRVVNIHHSFLPAFIGAKPYHRAYERGVKIIGATAHF
                     VNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLADKVFVYKNKT
                     IIL"
     gene            complement(4915..5316)
                     /locus_tag="PXA71_001814"
     CDS             complement(4915..5316)
                     /locus_tag="PXA71_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H-NS histone family protein"
                     /protein_id="HDL5105902.1"
                     /translation="MSALKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMK
                     QEELEKLKQLESLNKYREMLKQDGLSIDELAELLADKVIKTRKALSPRPAKYKFVDAN
                     GNEKTWTGQGRTPKALQDALDSGKKLEDFAI"
     gene            5753..7285
                     /locus_tag="PXA71_001815"
     CDS             5753..7285
                     /locus_tag="PXA71_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDL5105903.1"
                     /translation="MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFML
                     TNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAF
                     ANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYIL
                     DSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIM
                     VFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMK
                     TGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAY
                     GLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMA
                     FSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSST
                     GAQCNHMDHVISQLPYALLVATASIIGYLVVGFTQSAVLGFIATAVVMAILILLFKEK
                     KH"
     gene            7511..8263
                     /locus_tag="PXA71_001816"
     CDS             7511..8263
                     /locus_tag="PXA71_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5105904.1"
                     /translation="MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQ
                     FGDKFLPLAFDIQQPDEVEKVLNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQ
                     MIDTNIKGLVTMTRLVLPEMVERKSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSL
                     NLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVL
                     WLNQQPEHVNINRVEVMPVAQTSSALNVARNI"
     gene            8275..9465
                     /gene="trpB"
                     /locus_tag="PXA71_001817"
     CDS             8275..9465
                     /gene="trpB"
                     /locus_tag="PXA71_001817"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDL5105905.1"
                     /translation="MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQA
                     EFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRM
                     GKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPV
                     QKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEEIKRQIL
                     AKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGT
                     TGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEAL
                     EAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKIL
                     NGGE"
     gene            9467..10273
                     /gene="trpA"
                     /locus_tag="PXA71_001818"
     CDS             9467..10273
                     /gene="trpA"
                     /locus_tag="PXA71_001818"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDL5105906.1"
                     /translation="MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNG
                     ADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLC
                     ANLIFVPTAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQ
                     NTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQAGAAPILQGFGIAKP
                     EQVKEALRLGADGAISGSAIVKIIERNLADQANLLKELAEFVQVMKAATK"
     gene            10323..11729
                     /locus_tag="PXA71_001819"
     CDS             10323..11729
                     /locus_tag="PXA71_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HDL5105907.1"
                     /translation="MKLTKIVLSVVAVIGAVAVGGSWYTGKQVEEKYQELVVQANNQL
                     KQLSGEFGANIELKDVQIDRHFFISNAKYRLEVDLGNGKKLDFVGNDKLHHGPLPLNR
                     LAKLNLAPVMMSAESKLQAPEALKKLMGEHIGTGFSNISYSGDVEGHFDISPIKHSDE
                     TGHIETTPIKVQYSYDQKLKGVDSTVELESLKIKAEEFDFQIQGIVYDVQTENNESYP
                     NLTLGKGSGKINAIEFKSKDGKLSQIKDVVVKGDNLLKGDRLISTGDLEAATFNIEGV
                     EMGKLKMDMAYDLDAKLTNDITPLLSNPQTLENEKTGELLLQLLAKSFKFHINNFSLE
                     NSKGKVDLALLLNMAQFDPQNLGNMQAVLQVLSTSKFTSNINRQYAEDIIRQVSIVTE
                     KLGEEEAKAFAKQQVDAVFLNAGVEQYGLRKVDDNNVKIELTIDNGKVNLNGRELTED
                     ELQMALFMIVMGAGSLGQ"
BASE COUNT         3653 a         2074 c         2444 g         3560 t
ORIGIN      
        1 tggagaaaaa atgcaaacaa aaccgatatt agatgcctgt tgtggttccc gtatgtttca
       61 ttttgacaag caaaatccac acgttttatt tgctgataat cgacaaatag aaaccacaat
      121 gaaagacagt ggcaaagtcc gccatttaga aatcaaacct gatgttttac acgacttcac
      181 gaatatgcca tacgaaaacg agagtttttg gcacgttgtt tttgatccgc cacatttagt
      241 tcaaggtgga gaaaatagct ggcttgtgaa gaagtacggc aaattacctt gcaactggcg
      301 agaagtcttg aagaaaggct ttgacgaatg tatgcgagtg ctaaaaccaa acggcacgct
      361 tattttcaag tggaatgaaa cacaaatccc cgtttcagaa attttaaaag ttattgattg
      421 tcagccgatt tatggacaca aaagcggacg cttgaaccaa acacattggc tggcgtttgt
      481 gaaaattgag caatccctct aaattgaggg ggttatttgg agagaatatg gaacaaccga
      541 ctgaattttt aacgaaagac gaacttactg atttaacagg ctatcgtcaa aagaaaaggc
      601 aaatcgaatg gttgagggag cgtcactata taattcaaga tgaaaacaag tataagccat
      661 tagtgctata caaagatgtc tatgggcacc cccgccaaca atatccagaa gctcaatcca
      721 ctgggaaatg gaaatcacct gcttatttaa tgggagtgaa aaatgggaag accacgcaaa
      781 caacagaatc gctacttacc tgagaattta cgtccaaaaa cagttacacg aaaatcaggc
      841 aaaactgtca tttattggct atatcgcacg cacggaaaaa cggaaatctc tctaggcaca
      901 aatagaaatg aggcttttat taaggctgct caactcaata tagaaagaga aagccaaact
      961 gccagaatta ccttcgggct tgtagccaaa cgttatcgag atgaagttat acctcagaaa
     1021 aaagcgagca cagcacaaac agatttgtgc aagataaaaa atctactgct attctttaat
     1081 gacgctcctc tcgaagaaat cacccctcaa catatccgag agtatatgat ttggcgaaaa
     1141 gacacacctg gatctgctaa taacgaattt tcaatgttca gtcatatttg gcaatacgct
     1201 cgagagtggg gttatacaaa cttaccaagc cctaatatcg gaatgaaacg ctaccctatc
     1261 agaaagcgtg aaatttacgt tgagaacaat atatttcaga tggtatatga agtggcagat
     1321 caggatatga gagacttaat ggatctcgcc tatatcaccg gacaacgtcc tgtcgatttg
     1381 gtcaatatcc ggaaagaaca catttttgat ggttatctcc atattgttca gcaaaaaaca
     1441 caagccaaac tacgtattga gatagtggga aaactggctg atattatcca agataggctg
     1501 gagaaagcta ctggaacaca cttattcagc actaagaaag gggaaaagct aaccgctaga
     1561 aaactaggta aaaggttcac ttatattcgg gaacaagcgg tcaagaataa cccggaatac
     1621 gcaaatgaaa taatggcatt ccaatttcgg gatctaagag ctaaatcagg aacagataaa
     1681 gccctttctc taggtgaaga agccgctcgc caacaactag gtcatactag cgttcaaatg
     1741 accaaaacat acattcgaaa agccccaata gtaaccccta tcaaagaaag tgttccctcc
     1801 tcaaaacacc agtcttaaaa gacagtttcg gaacattttg cattttttcg gaacgtttac
     1861 ataaaaatca cttataatag attgaaagat aagtaatttt tgttactcgt tattactgat
     1921 aatattttta ataaaaaatg caatttattt tgctaatccg gctttaatca tcggttcaaa
     1981 aaagtcataa tcaaccaaaa aggcatcgtg tccgaaatcg gagtgaaact cgtggaactc
     2041 caaatttacg cctgcctgtt ctaatttttg tttgctctta tacacgtcaa cttgcttgaa
     2101 tagttggtcg cttgttaccg ctacaaaagt gtagttggct ttaatacgtt ttagggcggt
     2161 ttcttcattt tcatagccaa gagccgggtc gtataaatct aatgctcgga gtaaacggag
     2221 gtaagtgttg gcatcgaaac gacctaaaaa tttcgtgcct tgatagctta aataggattc
     2281 cacttggaaa tggtcgcccc aaatttgtcc ttgctgtttg gtttctcgtc caaaggcttt
     2341 agcaagttga atatcagtac ggtaagtcag cataccgagc atacgggcga tttttaagcc
     2401 gttatcaggt gcaatgccat cataatagtt cccaccgtta aagtgtggat cgttaataat
     2461 agcttggcgc ataacgtggt taaaaccgat agcctcggca cttagggtaa gtgacgaaca
     2521 aagatttata atgttgcgaa ctttatcagg gtaactaata ccccactgtg ttgcttgcat
     2581 tccgccgaaa gatcccccta ccactgcgtg aagttgaggg atttctaaat agtccaataa
     2641 tgctttttgt acattaacaa tatcttgcac tgtaataatt ggaaacaaac taccgtaagg
     2701 tttattggtt ttagggttaa tcgaagctgg gccggttgtg cctttacaac cgcctaatac
     2761 attactgcaa ataaagaaat atttatcggt atcaaacgca agccctttgc cgatgaaatc
     2821 ttgccaccag cctttctcgg ttggtgagtc atagtaaggc ttagcatcac cggtaagggc
     2881 gtggcaaagc aagaccgcat tgcttttctc tgcatttaat ctgccgtaag tctggtaagc
     2941 cactgtgata ggggacagtt cgcctcctaa tgtgagtggt aaaggtacgt cctcaaaaag
     3001 ggtaatctgc tgagccataa aaatcctgtt tgcaaaaaat tctgcttttt tgaccgcttg
     3061 ttgtaatgac cgttaaatta gcggtgttca tttcaattgt caagaatttt tagacgtcta
     3121 aacgtctaga tttttaaacg gctaaaatca aaattttatt gctgagaaga tatttattac
     3181 ttaacaaata acatgaaata gaataaattt attgaacgat tagactattt tgtttgtctc
     3241 taatttaccc atcttaaata gggtagcaaa agtaaaggat ctcatttgaa ccaaacgcgt
     3301 gataggttag aaaaattgcc acttttccat aaaatgcagc agtttattat taaggcattg
     3361 aaaataattg caattttccc cttattggga atagctatat tattagtggt tgattcactt
     3421 acaagttata ttgtgaggga taaaatttat acagatagta aacagattcc ttaccgggag
     3481 tatgcagttg tactcggtac ggcaaaattt tactctaaag atgtgattaa ccaatattat
     3541 aaatatcgtt tggaagccgc taagcaatta gtccaagaag gaaaggtcaa tcagcttttg
     3601 ttaagtggag ataataaaac gccgtactat aatgagccaa aaacaatgac aagtgatcta
     3661 cttaaaatgg ggattgcgac ttcaaaaatt aagcaggatt atgcggggta taccactttt
     3721 tattcaataa ttagggctaa aaaagtatat aaattaccgc catttacgat tatctcccaa
     3781 aaattccact gtgaaagggc attgtttatt gcaaaattta gggatattga tgcaatttgt
     3841 tatgccgcta catatccaga gggggcttat caggtacgaa tgcgggaaat tttagccaga
     3901 tcggcaatgg tttttagttt gttgataggt aaagagcctg aatcattgga agatatccgt
     3961 tctaaatgag atagccggtc agataatgtt gaccggctat tttgcttata aaataatggt
     4021 tttgttttta tatacaaata ctttgtcagc aagcactaat tctaaggctt ggctaagtac
     4081 ggttttctcg acatcacgtc cggcacgcat catagcctct gcggtgtagg tgtgatcaac
     4141 attaatcaca ttttgcataa taatcgggcc ttcatctaat tcatcattca caaaatgggc
     4201 ggttgcaccg ataattttca ctccacgttc gtatgcacga tgataaggtt ttgcaccaat
     4261 gaaagcgggt aagaacgagt ggtgaatatt gacaactcgg tttggataac gagcgacaaa
     4321 ttccggattc agcacccgca tatatttagc caacacaata taatcaggtg aatattcatc
     4381 aattttttcc gctaataatt tatcgtgttc cactcgggtt aaattttcgt ggctgactaa
     4441 atggaatgga atatcgaaac gttcaactaa actttttaat gtttcgtggt ttccaatcac
     4501 ggcagcaatt tctacatcta atccaccata gtaatttttc atcagtaagt cacctaaaca
     4561 atgtgcttct ttggtaacta aaataacgat acgttttctt tgtttaggga gtaatttata
     4621 gcttgagcct tcaggtaagg taaattttaa atcagtgagt aaggtttcat cattaaaaat
     4681 tccgtttaat tcggtacgca taaaaaaacg tttagtttca ttctcaacaa attcagaatt
     4741 tttaataata tttaattggt gcttatagca aatattggta attttagcga caagtcctgt
     4801 atcatcagga cattcagtta ataatatttt gtgttgttgt agcatttcat ttcctattat
     4861 aaaaataaga gaactcaatt gagttctctt taaactaaaa atagttatag ccaattaaat
     4921 agcaaaatct tctaattttt taccactatc taaagcatct tgtaatgcct ttggtgttct
     4981 gccttgacct gtccaagttt tctcattgcc gttagcatca acaaatttat atttagccgg
     5041 gcgaggtgat agtgctttgc gggttttgat tactttatct gctaataatt cagctaattc
     5101 atcaatagat aacccatctt gttttagcat ttctctatat ttatttaaac tttctagttg
     5161 ttttagtttt tctaattctt cctgtttcat ttcttcttct ttttcagcaa taattatatc
     5221 taatttctca gaaattgatt ttaattgctc taatgctaaa tctttagcca aagcccttaa
     5281 gctgcggata ttcaaaagac tttttaaagc tgacatttta ctctcctaaa ttaatgtttt
     5341 atataagtag cttttatgct ccttttatca tatctcaaaa ggcattttag gtaaataagc
     5401 ataaataaaa aaatagatac tttatatcta aagatattcg tgctatctta aacactgtcc
     5461 tacaaattgt agaggtgcga attcaataag tatttcttct gagtggaaaa cgatgaaggg
     5521 gaaggaaagg tgaatttgcc gaaatcaatt aagcgtcatc ttaattggtt ggggtcgttg
     5581 tcgaaagaaa cgacactgtc gtagtaaatg ctacggagtg ctactgttag ggtgggtttc
     5641 agatatttca catttgcctt cctttcatat ttatttttat aaatatccca gtagatctct
     5701 tgtttggcta ttcttattta tacaaattat acacagtcat tttagaggtt ttatgaatct
     5761 agttgattat tctacgtcac tttggtcggt attgccggca ctgattgcgc taatattggc
     5821 aattgtgaca cgcaaggtga ttatttcact tagcatcggt attctctttg gtgcatttat
     5881 gcttactaat agcaattttc ttgatgcact tacttatatt aaaaatagcg ttgtttcttt
     5941 agtttataaa ggggctgaag aaggattaaa ttcaaataat gttaacatta ttttattttt
     6001 gcttttatta ggggtattaa cgtcattatt aagtatttca ggtagtaatc aggcgtttgc
     6061 gaattgggcg cagaaaaagg taaaaggcaa acgaggcgca aaattaatgg cggcaggttt
     6121 ggttttcttt acctttattg atgactattt ccacagttta gcagtaggtg cgattgcccg
     6181 ccctgttacg gataaattcc gtgtttctcg tgctaaatta gcttatattt tagattctac
     6241 cgccgctcca atgtgcgtgt taatgccaat ttcaagctgg ggggcttata ttattacctt
     6301 aatagctggc ttattggcta cgcattccat cacaggctat tcgccactag gcgcatttat
     6361 gacaatgagc gcaatgaact tttacgccat ttttgcgatg attatggtgt tctttgtggc
     6421 atatttctca tttgatattg gttcgatggc gcgttttgaa cgtcaagcag cgcatttagc
     6481 agaattagat gatgagcaaa ttgaaacgaa aggacacgtg cgcgatttga ttttgccaat
     6541 tattgcactt attgttgcta cagtctcaat gatgatgaaa acaggtgcag atgcactggc
     6601 cgaatcaggt gcttcatttt ctatactagg tgcttttgaa aatactacgg taggcatttc
     6661 attagttgtt ggtggtgtgg cagggcttat agttgcaact atttgtatca ttacaagcgg
     6721 taatatttct tttaaaaatt acgtccgtgc ttatggctta ggtgtgaaga tgatgtctgg
     6781 tgcaatcact attctcttct ttgcgtggac aataaacggc gtagtaagtg atatgcaaac
     6841 agggaaatat ctatcaggat tggttgcaga aagcattgga gcagagtttt tacctgcaat
     6901 tctatttgtg ttagccgcag caatggcgtt ttcaacagga actagctggg gaacatttgg
     6961 tattatgttg ccaattggag cctcaatggc agtgcattca gatccagcat taattattcc
     7021 ttgtttatct gcagtaatgg ctggtgcggt ttgtggtgat cactgttctc cagtatctga
     7081 taccactatt ctttcttcaa caggcgcaca atgtaatcat atggatcatg tcatttctca
     7141 attaccttat gctttattag ttgcaacagc ttctattatt ggttacttag tggttggctt
     7201 tacccaatca gcggtattgg gatttattgc tacagctgtt gttatggcaa tactcatttt
     7261 gctttttaaa gaaaaaaagc attaatttcc gaaaatgtga agggaatcac agaatgagat
     7321 ttattgatga gataaaatag cactcaagat atggatatcg aatgttgtgt tatataaatc
     7381 ttaaaataag atcctcctag cattagcgta ccttttggta cgcttttttc ttttatggca
     7441 atattatttc ttgcaatttt aatttttttg tactacttta atagtacatt ttaaatttga
     7501 gggtgaaaag atgaaaatag cattagtcac aggagtaact gctggatttg ggttggcaat
     7561 ttgtaaatta ttgcttcaat cgggttataa agtaattggc acgggcagac gggcagagcg
     7621 tttagaagaa ctgcatttac aatttggcga taaatttcta ccgcttgcat ttgatattca
     7681 acagcccgat gaggtggaaa aagtactgaa tagccgccct aaagcgtggc aacaaattga
     7741 tttattagta aacaatgcag gccttgcact cggcttagaa ccggcacaga aagcagattt
     7801 gaacgattgg tatcaaatga tcgataccaa tattaaagga ttggtaacga tgacacgctt
     7861 agttttgcct gaaatggtgg agcggaaaag tgggcatatt attaatatcg gctcgattgc
     7921 cggcacttac ccttacccgg gcggtaatgt atatggtggt actaaagcct tcgtgaaaca
     7981 gtttagccta aatttgcggg cagatttagc cggcactaaa gtgcgtgttt ccaatgttga
     8041 gccggggcta tgtggcggta cggaattttc aaatgtacgc tttaaaggcg atgatgaaaa
     8101 agcggctaaa gtttatgaaa acgtgcagtt tgtgcgcccg gaagatgtgg caaatattgt
     8161 gctttggctg aatcagcaac ctgaacacgt taatattaat cgggttgaag tgatgccggt
     8221 ggctcaaact tcttctgcct taaatgtagc gagaaatatt taaaaggaaa tattatgtca
     8281 gacacacttc ttaatcctta ttttggtgaa tttggtggta tgtatgtgcc ggaaatttta
     8341 gtgccggtgc taaaagaatt agaacaagcc tttgtagatg ctcagcaaga cccaacattc
     8401 caagctgaat ttgccgattt actcaaaaac tatgccggtc gcccgactgc tttaaccctt
     8461 tgtcgtaatt taaccaaagg cagtaaaacc aaactctatt taaaacgtga agatctttta
     8521 cacggtgggg cacataaaac caaccaagtg ctagggcaaa tcttactcgc taaacgaatg
     8581 ggtaaaaccc gcattattgc cgaaacagga gcaggacagc acggtgtggc aaccgcatta
     8641 gcgtgtgcga tgttaggaat gccttgcgtg gtgtatatgg gcgcaaaaga tgtagaacgc
     8701 caatcgccaa atgtattccg tatgcgttta atgggagcgg aggtgattcc ggtacaaaaa
     8761 ggctcttgct cgctcaaaga tgcctgttgc gaggcaatgc gggattgggc ggcaaattat
     8821 gatactaccc attacctaat cggcactgca gccggcccgc acccgttccc gacaatggtg
     8881 cgtgaatttc agaaaatgat tggcgaagag atcaaacgtc aaattttagc aaaagaagac
     8941 cgcttgcctg atgcggtgat tgctgccgta ggcggtggct caaatgctat cggtatgttt
     9001 gcagatttta tcgaagagca atccgtcaaa ttgatcggtg ttgagccggc aggaaaagga
     9061 attgaaaccg gtgaacacgg tgcaccgctc aaacacggca caacggggat ctatttcggt
     9121 atgaaatcgc cgattatgca ggataaagac gggcaaattg aagagtctta ctccatttca
     9181 gccggcttag atttcccttc tgtcgggccg caacacgctt atttaaatgc gacagggcga
     9241 gctgaatatg tatcgattac cgatgcagag gctttagagg cattccaagc attagccaaa
     9301 aatgagggga ttattccggc gttagaatct tcccacgcct tagcctatgc gttaaaaatg
     9361 attaagcaga accctgaaaa agagcagtta ttagtggtga atttatcggg tcgaggcgat
     9421 aaagacattt tcaccgtgga taaaatttta aatggaggag agtaaaatga gccgctttga
     9481 tacgctattt actgcattaa aagcaaaaaa cgaaggggct tttgtgccgt ttgtgacatt
     9541 atgcgatcct ggttttgaac gcagttttga gattatcgac acgatgatta aaaacggggc
     9601 tgatgcttta gagctaggct ttccgttttc tgaccccctc ttagacgggc cggtgattca
     9661 agcagcgaat aaacgagctt tagatggtgg ctatagcact gatagctgtt ttgagctgat
     9721 tgccaaaatt cgagctaaat atccagacat tcctatcggt ttactactgt gtgccaattt
     9781 aatttttgtg ccaaccgcag aagtattttt ccaacgttgc caacaaagtg gagttgatgc
     9841 ggtgttgatt gctgatttgc ctgttttcgc tgctcaagag tttgtgccaa ccgctgaaaa
     9901 atatggaatt cagccggtgt ttatttgccc gccgaatgct gatcaaaaca ccattgaacg
     9961 gattgctcaa ttaacccaag gctacactta tttagtttcc cgtgccggtg taactagtgc
    10021 tgaaaaccaa gctcacgcaa gtaatttgga taatttagtg gaaagtttaa aacaagccgg
    10081 agctgcccct atcttacaag gttttggcat agccaaacct gaacaggtaa aagaggcgtt
    10141 aaggcttggg gcagacgggg cgatttcagg ctcagcgatt gtgaaaatta ttgaacgtaa
    10201 tttagctgac caagctaatt tgctcaaaga acttgccgaa tttgtacaag tgatgaaagc
    10261 ggctacgaag taaactacaa gcggtcattt tttaaatttt tttgaaaata aaaggaaaca
    10321 gaatgaaatt aacaaaaatt gttctttcag ttgtagcggt aattggtgct gttgcagttg
    10381 gcggaagttg gtacacaggt aagcaggttg aagaaaaata tcaagaattg gttgttcaag
    10441 ctaataacca acttaaacaa ctgagtggcg aatttggtgc gaatattgag cttaaagatg
    10501 tgcagatcga tcgccatttc tttatctcta atgcgaaata tcgtttagaa gtggatttgg
    10561 gtaatggtaa gaaattggac tttgttggta atgataaact tcatcacggt ccgctaccgc
    10621 ttaatcgttt agcgaaactt aatttagctc ctgtaatgat gagtgcggaa agcaaattac
    10681 aagctcctga agcccttaaa aaattgatgg gtgaacatat tggcaccggt ttttctaata
    10741 tcagctattc gggcgatgtg gaagggcatt ttgatatttc cccgattaaa catagtgatg
    10801 aaacaggtca tattgaaacc acgccaatca aagtgcaata tagctacgac caaaaattaa
    10861 aaggggttga tagcactgtt gagctagaaa gtcttaagat aaaagcagaa gaatttgatt
    10921 ttcaaattca aggtatagtt tatgatgttc aaacagaaaa taatgaaagt tatcctaatt
    10981 taactttagg caaaggtagt ggaaaaatta acgctattga gtttaagtct aaagatggca
    11041 aattatctca aattaaagat gttgtggtga agggcgataa tctattaaaa ggcgatcgtt
    11101 taatttctac cggagattta gaggcagcca ctttcaacat tgagggtgtt gaaatgggta
    11161 aattaaaaat ggatatggca tacgatttag atgctaaatt aaccaatgat attacgcctt
    11221 tattatctaa tcctcaaaca ttagaaaatg aaaaaacagg cgagttatta ttacaactat
    11281 tagcaaaatc atttaaattc catattaata atttctcact tgaaaacagc aaaggcaaag
    11341 ttgatttggc tttattactg aatatggctc aatttgaccc acaaaatctt ggtaatatgc
    11401 aagcggtatt gcaagtcctt tcaacaagta aattcacttc aaatatcaac cgtcaatatg
    11461 cggaagatat tattcgccaa gtctcaatag ttacagaaaa attaggcgaa gaagaggcga
    11521 aagcatttgc caagcaacaa gttgatgctg tttttctcaa tgcgggagtt gaacagtacg
    11581 gattaagaaa agtagatgac aacaatgtga agattgaatt aactatagat aacggaaaag
    11641 tgaatttaaa cggacgtgaa ctgaccgaag atgaacttca aatggctctg tttatgattg
    11701 tgatgggagc aggctcactc gggcaataat c
//
LOCUS       DANLRW010000080        11605 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.080, whole genome shotgun sequence.
ACCESSION   DANLRW010000080 DANLRW010000000
VERSION     DANLRW010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11605
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.080"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..227)
                     /locus_tag="PXA71_001820"
     CDS             complement(<1..227)
                     /locus_tag="PXA71_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105908.1"
                     /translation="MITSNLERSFHGLNIAQHNYKIFLDESGGNIGKLKHTPNDKKGS
                     NFNRTISSHIGVPPVFVLGGIAQISNANLIAP"
     gene            complement(254..928)
                     /gene="cas4"
                     /locus_tag="PXA71_001821"
     CDS             complement(254..928)
                     /gene="cas4"
                     /locus_tag="PXA71_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated protein Cas4"
                     /protein_id="HDL5105909.1"
                     /translation="MGDLQNSAEILPLVQPKFGDDKRSISLSALQHYAFCPRQCALIH
                     NEQVWAENYLTAQGQALHERVDSGEPEVRKGIRFERTVHVAAEKLGISGILDLVERDL
                     KTGELKPVEYKRGKPKLDPIDEIQLCAQALCLEEMTEQTINEGALWYMQTRHRLPIIF
                     STELRTKTLATIAEVRSLLDSGTTPPPEYSKRCKACSLIDLCQPKLLERDRSKGYVVG
                     VFGSLL"
     gene            complement(928..1791)
                     /gene="cas7c"
                     /locus_tag="PXA71_001822"
     CDS             complement(928..1791)
                     /gene="cas7c"
                     /locus_tag="PXA71_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas7/Csd2"
                     /protein_id="HDL5105910.1"
                     /translation="MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDV
                     CLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAR
                     EITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTN
                     EKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRS
                     AARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYCISVQTE
                     GLTGVTVEELL"
     gene            complement(1801..3582)
                     /gene="cas8c"
                     /locus_tag="PXA71_001823"
     CDS             complement(1801..3582)
                     /gene="cas8c"
                     /locus_tag="PXA71_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013448701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas8c/Csd1"
                     /protein_id="HDL5105911.1"
                     /translation="MITALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSK
                     GNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAK
                     DQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDAN
                     VVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVF
                     GGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDA
                     STVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELS
                     ENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCPWKTPPSIWRLL
                     LQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKA
                     VLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQSQALGELNAGIADRYYG
                     SASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDE
                     QGRFAIGYYHQKQSYFAKKETTESIEN"
     gene            complement(3604..4281)
                     /gene="cas5c"
                     /locus_tag="PXA71_001824"
     CDS             complement(3604..4281)
                     /gene="cas5c"
                     /locus_tag="PXA71_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated protein Cas5"
                     /protein_id="HDL5105912.1"
                     /translation="MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVH
                     WKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQ
                     QRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFA
                     ANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPF
                     YAEEVKS"
     gene            complement(4523..6274)
                     /locus_tag="PXA71_001825"
                     /pseudo
     CDS             complement(4523..6274)
                     /locus_tag="PXA71_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250669.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
     gene            complement(6264..6725)
                     /locus_tag="PXA71_001826"
     CDS             complement(6264..6725)
                     /locus_tag="PXA71_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105913.1"
                     /translation="MFKPHGSLDWFMAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQ
                     PFDAHREKANEAIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARN
                     VVKEAPNCKALIFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK"
     gene            complement(6884..8020)
                     /locus_tag="PXA71_001827"
     CDS             complement(6884..8020)
                     /locus_tag="PXA71_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5105914.1"
                     /translation="MLLRKAFKFEIRPNGEQVRKMKQFCGCSRFVFNKALAWQNEQYE
                     QDNHHKFSYTKLANLLPQWKKELVWLKDCHSQVLQQSLKDLESAFKNFFQKRADLPKF
                     KKKGVKESFRFPQGCKIEQKNDRLYLPKIGWVRYRNSREIVGEVKNVTVSMKCGRFFV
                     SIQTEFKQEIPTHKGGEIGIDMGIARFATLSNGEFFEPLNAFKTHKGKLAKLQKQLKN
                     KVKFSKNWQKLKDKIGKLHHKIANCRKDFLHKISTQISKNHAMIYVEDLQVANMSKSA
                     KGTAEVHGKNVKQKSGLNRVILDQSWFEFRRQLDYKTQWLGGFLLAVPPQNTSRTCPC
                     CNYTAKENRQTQENFECVECGYTENADVVGAMNVLTRGQAIVQA"
     gene            8067..8483
                     /gene="tnpA"
                     /locus_tag="PXA71_001828"
     CDS             8067..8483
                     /gene="tnpA"
                     /locus_tag="PXA71_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005720092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HDL5105915.1"
                     /translation="MKKETEIRRGRHVVFNLHVHLVFVTKYRREVFTQAILNDLHSIF
                     ATICADFEATLVEFDGEDDHVHLLVEYPPKVAISHLVNSLKGVSSRMIRKKNYPSIRK
                     KLWGNQLWSPSYFAGSCGGAPISIIRQYIEQQQTPD"
     gene            complement(8545..9138)
                     /locus_tag="PXA71_001829"
     CDS             complement(8545..9138)
                     /locus_tag="PXA71_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105916.1"
                     /translation="MREPLLDEDELKKWLQTIFTDNLVIIVGSGLSCAEGLPGMGALA
                     DRLKERMPECLDDIDKVTWNTISDCLDSEGLEGALLKHQANETIEAAIIKITAEYVLS
                     EEQKAINKCIAENQKLKFSYLLPHISASNPKIARVITTNYDRLIEFAAEYENWGIDSM
                     MVGRYWGKHNPDLSRKLQIRDIRVKGKCPKLVYLIVP"
     gene            complement(9269..11557)
                     /locus_tag="PXA71_001830"
     CDS             complement(9269..11557)
                     /locus_tag="PXA71_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated helicase/endonuclease Cas3"
                     /protein_id="HDL5105917.1"
                     /translation="MEEHTIQSFYAHSGKLSDHSDWQTLLSHANNVGLLAAEFAAPFA
                     SQEIARCTGLLHDLGKYSERYQKRLHGGERVNHSTAGAKIAVERWGPLGKMMAFCIAG
                     HHAGLANGSGEGKNRSTLTQRLQEQFGYGHKDLPVLDAIWQQELNLPEKLPLPPLKPS
                     KNEPFFSYAFFIRMLYSCLVDADFLDTEAFYANLEKRPLERGNYPNLTALHQQFNQFI
                     AQFRERIATQTPNTQEAQRKAEVNRLRSEILDYAVSQAKQETGLFSLTVPTGGGKTFT
                     SMAFALEHAKQYGLCRIIYVIPFTSIIEQNAAEFRKAFGELGTEAVLEHHSTFDHDSL
                     PDKSSRDKLKLASENWDTPVVVTTAVQFFESLFADRSSRCRKLHNIVGSVIILDEAQM
                     LPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVREIAPNPTALF
                     EKLKRTTVKHIGIQTDVELQSKLADNPQMLIIVNNRRHARALYDSAKQLEGAYHLTTL
                     MCAKHRSQTLTEIRLRLKQNLPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGR
                     CNREGKRLSVESNVWVFQPEEQWKAPPELGLLSGCMRSTVQVHADDLLNPKAINHYFQ
                     AVYEAKGKELDKPNILKACHDAGQSLNFPFQKIAEDFRMITSHLIPVIIPFDQEAENL
                     IDRLRYADQVGGILRKLQPYTVQVPEKALAELYNAGRVETINETNFGKQFYCLIGMDL
                     YDEVAGLSWENVDFLESEKLVL"
BASE COUNT         3204 a         2603 c         2209 g         3589 t
ORIGIN      
        1 ggagcaatta aattagcatt actaatttga gcaatccctc ctaatacaaa tacaggagga
       61 accccaatgt gggaagaaat ggttctatta aaattactac cttttttatc attaggcgta
      121 tgttttaact tcccaatatt tccaccactc tcatcaagaa atattttgta gttatgctgt
      181 gctatattta atccgtgaaa tgatctttct aagtttgaag ttatcacaac aagtccctcc
      241 ccaaagtagg taattataat aaagatccaa acactcccac cacatacccc ttcgatctat
      301 ccctttccaa caactttggt tggcagaggt cgataagcga gcaggctttg cagcgtttgc
      361 tgtattctgg aggaggtgtg gttccgctat ctaagagcga ccgcacttcg gcaatggtgg
      421 cgagggtttt ggtgcgtagt tcggtggaaa aaatgatcgg caaacggtgg cgagtttgca
      481 tataccacaa cgccccttcg ttaatcgtct gctctgtcat ttcttccaaa cataaggctt
      541 gggcacagag ttggatttca tcaatcggat caagtttggg cttgccacgt ttgtattcca
      601 ctggttttag ctcgcctgtt tttaggtctc gctcaaccaa atccaaaatg ccgcttatgc
      661 ctaatttttc ggctgcaacg tgaaccgttc gctcaaagcg aatccctttg cgaacttctg
      721 gctcaccact atctacccgc tcgtgcaacg cttgaccttg tgcggtgaga tagttttctg
      781 cccacacctg ttcgttgtgg atcagcgcac attgacgtgg gcagaaggca tagtgttgca
      841 aagcggaaag cgaaattgac cgcttgtcat cgccaaattt tggctgaaca agcggtaaaa
      901 tttccgcaga attttgcaaa tcgcccatta cagtaattct tcaacggtta cacccgttaa
      961 gccttcggtt tgtacgctga tacagtaatc gtcatagtct ttcgctggcg tgtctttttc
     1021 accgttgatt cgctcaactt ttaccgagtc aaacagtttg tgtgcaggtt ggttgcctaa
     1081 ttcgctgtcg tgtttaaata cgatcagttt acgagctgcc atttcgcctc gtgcggcaga
     1141 acggtcgtgt tcaaacataa gttgcaaggc ttgccaaagt ttttgtacat cttcatcaga
     1201 aaagcccgtt ttttcagcga gtttagctga aataaagccg tgaacacgat aaagtgcgta
     1261 aggcacgata tatttacgcc ccatagtccg ttctttttca agatcttttt cgttggtcac
     1321 tgccattcgt gtgatcgata cttctagcgg aataatcgga tcgatagatt gagcgaacgc
     1381 caattgcact gggcctcgca cctgtccgct gtttacttcg gtagtcatta ccgccccaaa
     1441 ggtgcgaata tcgaaaaagt ttttgcacat ccaagcggta atttctcggg ctttagcttc
     1501 ctcttttggt agttttttcg cttccgattc aatccctaat gcttcataag cacgtttgtt
     1561 ttgtaaattc agaacacttt tttctttaac ataaatttcg taacccgcct cgttttcata
     1621 gctcatttca ataaaattgc ggattttgcg ttttaggcaa acatcggtga ctaaaccttt
     1681 actggtttca ggatcaaggc gtggcatatt tcctgcatct ggatcaccat ttgggttacc
     1741 gttggttaca tcaaagaaaa aaacaaattc atagcggttt tgaatagaca tagtgtttcc
     1801 ttagttttca atagactcag tggtttcttt tttagcgaaa tagctttgtt tttggtggta
     1861 ataaccaatc gcaaaacgcc cttgttcatc gatacttaaa tggcgaggga aattttccgg
     1921 caagctggca ataatctcac ctaaatcctt atccagatta accgccattc cgcccttatc
     1981 ttttctcaag cgagataaat ggtgttttgc accgcttaat aagcgaggga ataccgaaaa
     2041 cggcacggca gaagccgaac cataatagcg gtcggcaatg ccggcattta attcgcctaa
     2101 tgcttggctt tggattcttt ctaatactgc aaataacctg ccgagcaagt aagcttggtt
     2161 atcgctttct ttatttaagc tcataggaac tccttcttta ataaaacctt ttctaaattt
     2221 tcgttgtaag actgctttca tcaacgctac tcgcaaaccg ttaatatcgc cgtctgctcg
     2281 gattcgagtc actaactgtg aaagtaaact catcggatat aaatgaccgc taataactgc
     2341 gcgagccatt tcacccgcca agactggaga aatattctca cttttaccta atgaagcggt
     2401 ttgtaataat agtcgccaaa tggaaggtgg tgttttccat gggcaaggct caagagcgag
     2461 atcttgccaa tgctcgctga ggttttttgc cagttgccca aaggtggtat ccagccaaaa
     2521 acgtaccgaa atgcgagctg catttggagc aagccccaac acataaaaac gggtgttttc
     2581 agataattct ggggaaattt ctgcaagcgg tcgtcctttg ctgatttttt gcaattcttc
     2641 aaagattttt tggttttctt gctcatcatc tggaggcgtc attaaagcag caaaaaagcc
     2701 ttcagcagct tcagcttggg tggtattgtc tgcttctgcc caaaagacag tgctggcatc
     2761 accaatagtt aaacgatgtt tctcggtgcg taacaaataa tttaaagcag tagtgtaggc
     2821 aaaggcggct tgttcagaaa caggggcatt actaccttgt tccttgccaa atgaagtgaa
     2881 ggattcttta ttgaaagaga tgattgaacc accggaactt tgcccaccaa ataccccttt
     2941 aataggagga tgagttcgtt gaattggcga taatttgcct gaaattaagc ataaaccttt
     3001 ttcagcatta tcactttgat ttatcaacaa acttgtccaa agggtttgtg cagcttctcg
     3061 ctgatgaata taaccgcttg tgccgactaa tttaaacacg acattcgcat caagaatttc
     3121 tcttgggcag attgattcgg caaaatgtgt gggttgccat tgttgcagga aatttcttat
     3181 cgccattaaa ccttcatcat tggaatctgc aagcaaatcc aaatggtact gtttaaatgc
     3241 ctcaaaggtt ttctcggcga aattgatggg ttgatctttg gcggtggctt tatcaggatt
     3301 actttcaatg cctagcacat aagcggtttt atcccacaga aaattgggct taatgccaga
     3361 cgtgcgtttt tcagggcgag gtacgctcat caatttcggt tttggtttct tatcttctgt
     3421 taaatttgag atcacattga ccaaatttcc ctttgaatct aattctagta cccaaccgat
     3481 tttttcttca ctgaaaccat aagaaggcac tttagcttcg cctgttaagc gatcttcttg
     3541 tgctgcaagg cggtaataat agcgagttaa ggcggtaata atagcgagtt aaggcggaga
     3601 gaatcatgat ttgacctcct ctgcataaaa tggtggcaca tcaatcacgc catttttcat
     3661 ttccgcacgg aagaaacgag gttgattacc gtgctcaaaa tcaatgtcgt gcaacatcca
     3721 gcctaaatcc cgatctcgct cattttctgc caaaaaacac tcaggtaacg gttcatcgtc
     3781 atcaatcaag gcaaaatttg cggcaaattc acgcacgccc atacaaggct gctggaaaca
     3841 ttgccccttt ttcgcacggc gtttaaacat ttcaatatgc ttggtgacgg tttccgcctc
     3901 gcctgccatt ttggtcagca ctgcgtgagc ttcgatcaca taaccgacat ttttcagcac
     3961 agtagcagca cgttgttggc ggtcgtcttc aatcacagta tataaatccg ccactgtttt
     4021 acgcttcatt gcaccactga ttttactggc agaaatttta ctgcctaact cattacggcg
     4081 aacagactca aattgaatcg gttgtaatac ataaatttta tcaatcaccc agcgaattgc
     4141 cggcttccaa tgcaccgcag ccaaaatccc ccgtgccgca gacggcgtaa tcacatcata
     4201 agacacccgt tctaccttca tttcaggacg ggtaaaacaa gcataatcac cccaaatatg
     4261 gagcctgatt ttgtttggca taatagaatg ctccttttaa ttatgtaaca cacacctccc
     4321 cgaagggagg tgaaatttct ttagcttata ttataactgc tttggtttca acccacgcac
     4381 tcagtaaaat gcgaaaaatt ttatggctta ttatattaag cggtcggatt tacttagaaa
     4441 gttgcaaagt tatttgagta tttaaccgct tgtatttcaa aaatagtcag aaaaataaca
     4501 gcattctagg tacaatattt ttctaagaac gaacttgtct ccgcaatgcc tctactgcgt
     4561 ttgacacagc atttggtttg ggctcctggt ttgcccaatc agaccagaat tggcgtgtag
     4621 cactttctgg ggctatatgc ggtttagcaa gtttgattcg tgtaggtaat agaatcgaat
     4681 cgcctagcaa taacgcttcg cctaaatcaa gtaacggcaa tatatcagta attccaacca
     4741 tagattccgg caataaacgc tttacaacac tttgatcttg accatttgtt aatcgtaaaa
     4801 ccaagaaatt attacattga ctcaaaattg ttcggcttac atctgaagga cgttggctaa
     4861 cgaccaacaa agacacgcca tattttctac cttctttcgc aatccgctca aaggcttcca
     4921 atgcgcgttt ttccgctgct tccgctgaat ctcgaacagg gagatataaa tgtgcttcat
     4981 cgcaaataat cgttagtgga tggcgggaat ctttatccat ccaaaattga atgttgtata
     5041 aaaggcgggc aagaactccc gtaacaatcg gtaaaacatc cgacgggact tccgaaaaat
     5101 caataatttt tatccctttt tcgctctcag aagcagaaaa cagttttgac aacatatttt
     5161 ccagccaccc atagctgttg cactctactg gcggttggaa cataaaaccg caacgtctgt
     5221 catctatttt ggctttcatc cttcccataa acctagacaa cttactatac caaggacctt
     5281 gctttgttcc tgaacctccc tctttaggta ccatctcaga attatcttta tctaaacgag
     5341 ctaacaataa ttcaatagaa tacggaattg gcgaatcaac agtaaacgtt tccaaaacat
     5401 catttctttc ttccttattc aatgtttgct cttttaatgc gcgaacatgc tcagtaaaac
     5461 gcgccgcctg attcggagca ttatcatcac tgcgatctaa aattaaagcc agcatttatt
     5521 cccgattgag cagccaatag ggaataaata aactgcgttc atctgaacca tccaaatctc
     5581 ccggtccagc aatacggtat tgctgagcga tagcgttttt accttcgcat agagtgctat
     5641 attcaccgtg catatcgaat acaataagat tagcagcttt taaagctgct gcacgttcca
     5701 atattaatgc aactgaccag cttttaccgg aaccagtact acccaaaata gcagcgtgcc
     5761 gttgaaagaa tttatctccg tttgctatag ctacagccgt ttcatcagcc ataaaatgac
     5821 ctaaagtcag ccgttcattt tcttttacgt tagcggacaa aagattcata aataattgca
     5881 gattgctgcc actaatatga aagcaatctc tatcaatttg cggaaaacaa tccgctcccc
     5941 gcttaaaagt gttgctcaaa ctaccatcaa cagctttata agtaccgatt aatactgcct
     6001 tgataaagtc atcctgactt tcacccagag gaatttcacc ctcattagat atttcttcta
     6061 gcagcaattt ttcactgata gaacgcgtta cccgttcgat aatgccgata aggtactcac
     6121 tagccgttct gccttgaatc gcaatcagat tacccacagc aatactagtc atttgttgat
     6181 gctcttcaac agaaatcaat acacggctgg tatctactgt tacaaccctg cccaaacggg
     6241 cattgtcttt aaaattcaat gtttcatttg ccattctcta aaatctcttt tacaaaaaac
     6301 tcaacgtccc accaatgaac attaggaata aaagtttctt cttgcttgct aaccaccctt
     6361 gttccagcct tatctccatc aaaaatcaga gccttacaat tcggagcttc cttcaccacg
     6421 tttctggcat tttctgaaag tcctcttgtc agaagtagtg ttttcacacc acttttaatt
     6481 ttgcctgtca aatgtgtttg aaggtggtca tcattaaaac catagccgat acataaaatt
     6541 gaagaagcag aatcaatagc ttcatttgct ttttctcgat gagcatcaaa tggttgtcca
     6601 tagccttttt tatacttccc aacaccaggc gtaataatta aaggctcttc cactttacct
     6661 atacaacttg tcattggaac gtctccagcc ataaaccaat ctaaactacc atgcggttta
     6721 aagattttga tatgatctcg ttgacatcct cccctgccta aaggcagggg attcctacta
     6781 gctcccacag caagctgtgg gctactctcg gtgggtttct actgctgatc tctattgaga
     6841 ttcacttcat agacgcttcg ggtatgtcct accctgatat ttattatgct tggactattg
     6901 cttgcccacg tgtaagaaca ttcattgctc ccactacatc ggcattttcc gtatagccac
     6961 attctacgca ttcaaaattt tcctgtgttt ggcgattttc ttttgctgta tagttgcaac
     7021 aagggcaagt acgactggta ttttgtggag gaactgctag caaaaatccg cctaaccatt
     7081 gcgttttgta gtccagttgt cgtctaaatt caaaccaaga ctggtctaat atcactcggt
     7141 ttaagcctga tttctgtttc acatttttgc cgtgtacttc cgctgtgcct ttggctgatt
     7201 tggacatatt cgccacttgc aaatcttcaa catagatcat cgcgtggttt ttgctgattt
     7261 gcgttgagat tttatgcagg aaatcttttc ggcagttggc gattttgtga tgtaacttgc
     7321 cgattttatc tttcagtttt tgccagtttt tactgaactt cactttattt tttagctgtt
     7381 tttgcagttt tgccaatttt cctttgtggg ttttaaacgc atttaacggc tcaaaaaatt
     7441 ctccattgga aagggttgca aaacgagcaa tgcccatatc aatgccgatt tctccgcctt
     7501 tatgcgtggg aatttcctgt ttaaattccg tttgaatgct cacaaaaaag cgtccgcatt
     7561 tcattgaaac ggtgacattt tttacttccc caacaatttc acgactgttg cgataacgca
     7621 cccaaccgat tttcggcaga tacaagcggt cgtttttctg ctcgattttg caaccttgcg
     7681 gaaaacggaa actctctttt acgccttttt tcttgaattt gggcaaatcc gcacgctttt
     7741 gaaagaagtt tttaaacgca ctttcaaggt cttttaacga ctgttgaagc acttgtgaat
     7801 ggcaatcttt aagccatacc aattcttttt tccattgcgg aagcaagttg gcgagcttgg
     7861 tataactgaa tttgtgatgg ttatcttgtt cgtactgctc attttgccac gccaatgcct
     7921 tgttaaacac aaagcgagaa cagccgcaaa actgcttcat tttgcgaact tgttccccat
     7981 ttggtctgat ttcaaattta aaggctttac gtagtaacat tgcacgaatt agaatacaaa
     8041 aattgtgctt attctacact tggcctatga aaaaagaaac agagattaga cgtggtcgcc
     8101 acgttgtttt taacttacac gttcatttag ttttcgtgac taaatatcgc agggaagttt
     8161 ttactcaagc aattttgaac gacttacact caatttttgc aacgatttgt gctgattttg
     8221 aagccacatt agtggaattt gatggtgaag atgatcacgt tcatctactt gtggaatatc
     8281 cgcctaaagt cgctatttct catcttgtaa acagtttaaa aggcgtttcg agccgaatga
     8341 ttagaaagaa aaactatccg agcattcgca aaaaattatg gggaaatcaa ctttggtcac
     8401 cgtcttactt tgctggtagt tgtggtggtg caccaatatc gattattcgc caatatatcg
     8461 agcaacaaca aacacctgat tagttagaaa tttgaaacgg ctttgccgtt tataccttat
     8521 atccacgccc taaaggacgt ggttttacgg cacgattaga taaaccaatt ttggacattt
     8581 accttttact ctaatgtctc ttatctgcaa tttcctactc aaatcaggat tatgttttcc
     8641 ccaataacga ccgaccatca ttgaatctat tccccaattt tcatactctg ccgcaaactc
     8701 aatcaatcta tcataattag tagtaattac acgggcaatt ttaggatttg aagctgaaat
     8761 atggggaagc aaataagaaa atttgagctt ctgattctca gcaatacatt tgtttatcgc
     8821 tttttgctct tcggagagta catactcggc tgttatttta ataatagcgg cttctatcgt
     8881 ctcatttgct tgatgcttca acaatgcacc ttccaagcct tcagaatcca gacaatcaga
     8941 aatggtattc catgttacct tatctatatc atcaagacat tcaggcattc gttcttttaa
     9001 tctatcagct aatgctccca ttcccggcaa accttcggca caggacaaac ccgaaccgac
     9061 aataatgacc aaattgtcag taaaaatagt ttgcaaccat ttttttaatt catcttcatc
     9121 taataatggt tctctcattt tacgtttccc ttccaaatat ctattcttac aaactagctg
     9181 tttactacga gacgtcatag gctatttggt atattaaagt atatctatgc aaaattaaac
     9241 ttataaagaa gttaaaataa acattcatct ataaaaccaa tttctccgac tcaagaaaat
     9301 ccacattctc ccaactcaac cccgccactt catcatacaa atccattcca attaagcagt
     9361 aaaactgttt gccgaagttg gtttcattaa tggtttcaac tctgccagcg ttatagagtt
     9421 cggctaatgc tttttccggt acttgcacag tgtaaggctg gagttttctt aaaataccgc
     9481 ctacttgatc cgcatagcgt aaacggtcaa taaggttttc ggcttcttgg tcgaaaggga
     9541 taatcaccgg aattaaatgg cttgtgatca ttcggaaatc ttcagctatt ttttggaatg
     9601 ggaaattaag gctttgccca gcgtcgtgac acgcctttaa aatatttggc ttatccagct
     9661 cttttccttt agcctcataa accgcttgga aataatgatt gattgctttc ggattaagta
     9721 gatcatctgc gtgaacctga accgttgaac gcatacagcc agaaagtaag cctagctctg
     9781 gtggtgcttt ccactgttct tcaggttgga aaacccaaac attgctttct acagataaac
     9841 gtttcccctc tcggttgcaa cgccctgctg cttgagccac tgaatctagt cctgcttcag
     9901 ctcgcataac cagtgggaaa tcgacatcaa caccggcttc aattaaagaa gtggcaatca
     9961 ctcggcaagg taggttttgt tttaggcgaa gacgaatttc agtcagcgtt tgtgagcggt
    10021 gtttagcaca cattagcgtg gtgaggtgat aagctccctc taactgtttc gctgaatcat
    10081 ataacgctcg ggcgtgacgg cggttattca cgattatcag catttgtggg ttatctgcga
    10141 gtttgctttg caactccaca tctgtttgaa taccgatatg ctttaccgta gtacgtttca
    10201 atttttcaaa aagtgcggtt ggattagggg caatttctcg cacattttca aatcctttat
    10261 aaaaaccgtt cgcttgatga atagcgggtt gtgtcgctgt gcaaagcact accgaacatt
    10321 gataattgcg agctaattca tcaatcgcag ccataattgg gcgtaataaa ttcaacggta
    10381 gcatttgggc ttcgtccaaa ataatcacgc taccgacgat attatgcaat ttgcgacagc
    10441 gtgaagaacg gtcggcaaac aaactttcaa agaattgcac tgcagttgta accacaacag
    10501 gagtatccca attttctgat gccaatttca gcttatctcg gcttgattta tcaggtaggc
    10561 tatcgtgatc aaaagtgctg tgatgttcca ataccgcctc tgttcctaat tcgccaaaag
    10621 ctttacgaaa ttccgcagca ttttgttcaa taatgctggt aaacggaata acataaataa
    10681 tgcggcataa accatactgt ttagcatgct caagggcaaa cgccattgaa gtaaaggttt
    10741 taccaccgcc cgttggcaca gtcagagaaa acagacctgt ttcctgtttt gcttgagata
    10801 cggcataatc caaaatttca ctccgcaagc ggtttacttc cgctttacgt tgtgcttcct
    10861 gcgtattagg cgtttgagtg gcaattcgct ccctaaactg tgcaataaat tgattaaatt
    10921 gctgatggag tgcggttaaa ttggggtaat ttcctcgttc aagcggtctt ttttcgagat
    10981 tggcataaaa agcttctgta tcaagaaagt cggcatcgac aaggcaagaa tagagcattc
    11041 ggataaaaaa ggcgtaagaa aagaaaggtt cgtttttaga aggctttaac ggcggtaagg
    11101 gcaatttttc aggcaaatta agttcttgct gccaaatagc gtcaagtacc ggtagatctt
    11161 tatgaccata gccaaattgc tcttgcaaac gttgtgtaag tgtagaacga tttttccctt
    11221 ctccagaacc atttgctaac ccagcgtggt ggcctgcgat acaaaacgcc atcattttgc
    11281 ccaaaggccc ccaacgttcc actgcaattt ttgcaccagc agtagagtga tttacccgtt
    11341 ctccgccatg taaacgcttt tggtaacgtt cactatattt gcctaaatcg tgcaatagcc
    11401 ccgtgcagcg agcaatttct tgtgaagcaa acggcgcagc aaattcggcg gcaagcaagc
    11461 caacattatt ggcgtggctg agtaaagttt gccaatctga atgatctgaa agcttccccg
    11521 aatgggcata aaaagactga atagtatgtt cttccatttt tataccttca atatttcctt
    11581 cctaacacaa gcaatactac ctcta
//
LOCUS       DANLRW010000081        11468 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.081, whole genome shotgun sequence.
ACCESSION   DANLRW010000081 DANLRW010000000
VERSION     DANLRW010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11468
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.081"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(99..1388)
                     /locus_tag="PXA71_001831"
     CDS             complement(99..1388)
                     /locus_tag="PXA71_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDL5105918.1"
                     /translation="MDSIPLSSLFITLAILLVLSAFFSGSETGLMSLNRYKMRHLAEQ
                     GHKGAKLAEKLLARTDVLLSLILICNNLVNIAASAIATMIGMQLSGEAGVAIATGLLT
                     FVMLVFSEILPKTVAAIYPEKVGFFASFVLTPLKKLLSPIVFLMNLIIAGLMKLLRIQ
                     QKDKQGLSSEELRSVVLDAGKFIPAEHREMLVSILDMEKVTVDDIMVPRNDISGIDID
                     DDWKAIMRQLNHAPHARVIIYKGDMDNNIVGILRVREAFRLMLEKNEFTKEMLLRATD
                     EVYFIPEGTPLTTQLMNFKANKERIGLVVDEYGDIKGLVTLEDILEEIVGEFTTSSAP
                     TLEQEVQQQSDGTVIIEGSANLRDLNKLFDWDLPLEEARTFNGLILEHLEKIPDEGME
                     FELYNLKVMILEVSENMVKQAKVEHLSPKIEKEQDSA"
     gene            complement(1512..2309)
                     /gene="ccsA"
                     /locus_tag="PXA71_001832"
     CDS             complement(1512..2309)
                     /gene="ccsA"
                     /locus_tag="PXA71_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDL5105919.1"
                     /translation="MLLPLLSIVAYALALLWVAPTLVNLENAATVNKKPNMMLVFGFG
                     LLATILHFSVLYNELFLIEGQNFTVTNVISLMSFIMAACVTLALLKWKTVWFPLIIVY
                     SFAICSVGVAGFVKGSFIRNVQENAGLLFHLGIALFSYALFFLALIYAFQLKWLDRKL
                     KSKTMFFCQILPPLMTVERHFFTLTLAAQAMLTLTLFSGVVYLHNFFEPEHIHKAIFS
                     FLAWLVYSIQLLGQWKLHWRGKRVLIYSISGMMLLTIGYFGSRLIVN"
     gene            2525..3049
                     /gene="yceD"
                     /locus_tag="PXA71_001833"
     CDS             2525..3049
                     /gene="yceD"
                     /locus_tag="PXA71_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HDL5105920.1"
                     /translation="MQKVKLPLTIDPYKDAQRRVDYEGYISGKLLTRLGESVCNVQSD
                     AQVTLSLYVDPQRLTVIKGTAKVDVEFDCQRCGDPFTQTLDCSFVFSPVSNMDQADIL
                     PEIYEPIEVNEFGEVNLLDMIEDEFILELPLVPMHSEEHCEVSVSEQVFGELPEELVQ
                     KPNPFAVLANLKKN"
     gene            3066..3236
                     /gene="rpmF"
                     /locus_tag="PXA71_001834"
     CDS             3066..3236
                     /gene="rpmF"
                     /locus_tag="PXA71_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006231206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDL5105921.1"
                     /translation="MAVQQNKKSRSRRDMRRSHDALTTAAVSVDKTSGETHFRHHVTA
                     DGYYRGRKVINK"
     gene            3255..4277
                     /gene="plsX"
                     /locus_tag="PXA71_001835"
     CDS             3255..4277
                     /gene="plsX"
                     /locus_tag="PXA71_001835"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDL5105922.1"
                     /translation="MVDITLAVDVMGGDFGPRVTIPALEKALKQNPSLSFLLFGDEHQ
                     IAPLLQKHTLLNHPKIQIHHTEQVIEADVPFTTAIRQSKNSSMRLAIEAVKEGKAQGC
                     VSGGNTGALMGLAKLLIEPLPNIERPALTSLIPTLNGKSSVMLDLGANIEVSNHQLQQ
                     FAEMGNLFAQVMLDLVYPRLSLLNIGTEENKGTAQLQAVHQLLKNRQDLNYTGFIESD
                     KLTSYLTDVIICDGYTGNIALKALEGAAKNIISLFKKEKADSNICRNTKRYLLKAMFY
                     RYYRKLQQINPDRHNGATLLGLSKVVVKSHGGANINAFYYAIDYAVQQIQGDIPNKIL
                     EGLTQK"
     gene            complement(4374..5657)
                     /gene="hisD"
                     /locus_tag="PXA71_001836"
     CDS             complement(4374..5657)
                     /gene="hisD"
                     /locus_tag="PXA71_001836"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDL5105923.1"
                     /translation="MQTLIWNNLTETEQQQYLARPAQVVGESIKAAVNEIKANVIANG
                     DKALFELAEKFDKVKLESLVVSEQQIQQAQSRISPELKQAIQNAKANIEAFHKAQQNQ
                     EVDIETQPGVCCQVITRPINAVGLYIPGGSAPLFSTVLMLAVPAKIAGCNKIVLCSPP
                     PIADEILYTAHLCGVETIYAVGGAQAIIAMANGTQTVAKVDKIFGPGNAFVTEAKRQV
                     VQEGTAIDMPAGPSEVLVIADEFADPAFVASDLLSQAEHGADSQVILVTPSESLARAV
                     DEELEKQVAVLPRAETARKALAHSRTFIAENLQQAVEISNKYAPEHLIVQTENARSLL
                     ADLDNAGSIFLGAYSPESMGDYASGTNHVLPTYGYTKTYSSLGLADFSKRMTVQELTP
                     QGFLALAETVERMASAELLDAHRNAVSLRVAKLKG"
     gene            complement(5669..6568)
                     /gene="hisG"
                     /locus_tag="PXA71_001837"
     CDS             complement(5669..6568)
                     /gene="hisG"
                     /locus_tag="PXA71_001837"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDL5105924.1"
                     /translation="MTTQNRLRIAMQKKGRLSQECSELLKQCGVKIIWNDQRLIAYSE
                     NMPIEILRVRDDDIPGLVFDGVVDLGIIGENVLEEVELGRLSAGENVAYKKLRQLDFG
                     GCRLSLAIDRDKNYNNIKDLEDAVIATSYPNLLKRYMKEQNVPFKSILLTGSVEVAPS
                     AGIANAICDLVSSGATLEANGLKEVEVIYRSTACLIQRQEPLSAEKQALVDKLLTRIQ
                     GVQQANESKYIMLHAPKDKLAEITALLPGVENPTILPLANDQTRVAMHVVSQENLFWE
                     TMEQLKEMGASSVLVLPIEKMLA"
     misc_feature    complement(6601..6728)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00514"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="His leader region; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /db_xref="RFAM:RF00514"
     gene            6927..7784
                     /locus_tag="PXA71_001838"
     CDS             6927..7784
                     /locus_tag="PXA71_001838"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDL5105925.1"
                     /translation="MQISLKKIYSGKVRDLYEIDEKRMLMVATDRLSAFDVILDDPIP
                     RKGEILTQISNFWFNKLAHIMPNHFTGDSVFDVLPQEEAEAIQHRAVVCKRLIPVKIE
                     SIVRGYLTGSGLKDYQQTGTICGLTLPEGLVEASKLPQPIFTPSSKAEVGDHDINISY
                     EECERQIGQELAAKVRDAALKLYTEAANYALTKGIIICDTKFEFGLDENGELTLMDEV
                     LTPDSSRFWSVETYREGTNPPSFDKQFVRDWLENSGWNKQPPAPKIPAEVIEKTVAKY
                     QEALDLLTK"
     gene            complement(7925..9406)
                     /gene="ilvC"
                     /locus_tag="PXA71_001839"
     CDS             complement(7925..9406)
                     /gene="ilvC"
                     /locus_tag="PXA71_001839"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDL5105926.1"
                     /translation="MANYFNTLNLRQKLDQLGRCRFMDRDEFADGCNFLKGKKIVIVG
                     CGAQGLNQGLNMRDSGLDIAYALRAEAIAEKRASFKRASENGFVVGTYEQLIPEADLV
                     INLTPDKQHSKVVADVMPLMKQGAAFGYSHGFNIVEEGEQIRPDLTVVMTAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGLAIAKAWASATGGDRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSIVCYDKLVSEGKDPAYAGKLIQYGWETITEALKQGGITLMMDR
                     LSNSAKLRAFELSEQIKEELAFLFEKHMDDIISGEFSSTMMADWANGDANLLKWREET
                     GKTAFENAPQADGIKISEQEYFDNGVLMVAMVKAGVELAFDTMVSAGIYEESAYYESL
                     HELPLIANTIARKRLYEMNVVISDTAEYGNYLFSHVATPILAEKIIPTLEKGDLGEPT
                     PAVEIDNVTLRDVNDAIRNHPIELIGQELRGYMTDMKRISSQG"
     gene            9628..10863
                     /locus_tag="PXA71_001840"
     CDS             9628..10863
                     /locus_tag="PXA71_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraquat-inducible protein A"
                     /protein_id="HDL5105927.1"
                     /translation="MKINRIILQSCSECGQQVRVPLTSNGNAVCPVCHNILRKSNTWS
                     LHRSAFLALAILILLPFALTFPLMSIDLLGIKINATVWDGIWKMATEGYPYTAFMVLV
                     CAVIMPIAFVLLILTIQLQRIIRQRPRYTLIFLTKIKEWVMLDVYLVALAVAAFKIRD
                     YADLQFDINLIAFVLVTLLNTLLFIKTEPKQAWERFYPEYHALPFDHPSNPTLCPTCE
                     YCFDETILDLKGRQRCPRCESNLSISDNVKIQRVWACLIAGTIMMIPANIFPISTTEL
                     AGQVSADSLMSGVLLFMEMGSYTVAAIVFIASIAVPVSKITIIFYLLLAIHYKWKHPI
                     HWQMKLLHYVHFVGRWSMLDLFVLSLMMSLLERGQILSFSVGEAAFYFGAAVFLTMFA
                     SANLDSRMLWKIHTVQKTS"
     gene            complement(10860..>11468)
                     /locus_tag="PXA71_001841"
     CDS             complement(10860..>11468)
                     /locus_tag="PXA71_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105928.1"
                     /translation="ISILFTLFSLKVNAKIAIRKERFFISFKSFDKDFFVFVFLSYIL
                     FSMCYLLYEQLIPTILKQWGNFNLYPIWVILNSIAIALLQIRLYKSVTKRITHQFSLI
                     LSFIICIILSGLFMFISQNIVTLFIVLVGVTYLEMFFSTAMDTLIASSKYSKDYFIFA
                     NFFLAIGATLSALSYSIGIEILGYVLLFLLCMLCIIYRKIFI"
BASE COUNT         3484 a         2517 c         2120 g         3347 t
ORIGIN      
        1 ctaaaagcta ccagcataat tatttatatt aaaattaaca aaaaaataac acattatttg
       61 tacaaataat gtgttattta ctttcttttt tcttaaaatt aggctgaatc ttgctctttt
      121 tcaattttcg gtgaaagatg ttcaactttc gcttgtttaa ccatattttc actcacttca
      181 agaatcatca ctttcaagtt gtagagttca aattccattc cttcatcagg aattttttct
      241 aaatgctcta aaatcaagcc gttaaaggtt ctggcttcct caagcggtaa atcccaatca
      301 aatagtttgt tcagatcacg caggttggct gagccttcaa taatcaccgt accatctgat
      361 tgttgctgaa cttcttgctc aagggtcggt gctgatgaag tcgtaaattc acccacaatt
      421 tcttctaaaa tatcttcaag agtgactagc cctttaatat caccatactc atcaaccact
      481 aaaccaatac gctctttatt cgctttaaag ttcattaatt gtgtagtgag tggtgtgcct
      541 tcaggaataa aatagacttc atctgttgca cgcagtagca tttctttggt aaattcgttt
      601 ttctccaaca ttaaacgaaa ggcttcacgc acccgcaaaa tcccaacaat attgttgtcc
      661 atatcccctt tgtagataat cacccgagcg tgaggggcgt gattaagctg acgcataatc
      721 gctttccagt catcatcaat atcaatgccg ctgatgtcgt tgcgaggcac cataatgtca
      781 tcaaccgtca ctttttccat atctaaaata gagaccaaca tttcacggtg ttcggcagga
      841 ataaatttac cggcatcaag cactacacta cgcagctctt cggagcttaa gccttgttta
      901 tctttttgtt gaatccgcaa taatttcatc agcccggcaa taatcaaatt cattaaaaat
      961 acaatcgggc tgagtaattt tttaagcggt gttagcacaa agctggcgaa aaaaccgact
     1021 ttttcagggt aaattgccgc tactgtttta ggtaggattt ccgaaaaaac caacattaca
     1081 aaagttagca aaccggttgc aattgccaca ccggcttcac cggataactg cataccgatc
     1141 atcgttgcaa tcgcagaggc ggcaatgttg actaagttat tacaaattaa gataaggcta
     1201 agtagcacat cggtgcgtgc caagagtttt tccgccagtt tcgccccttt atgcccttgc
     1261 tcggcaaggt gacgcatttt gtagcggttt aaagacatca agccggtttc cgagcctgaa
     1321 aaaaatgcag agagtactaa aagaatagct aaggtaataa ataaactact caggggaata
     1381 ctgtccaaaa ttcaattcct atgtaaatta atcataaaag gtagcgtaac actaaaagcg
     1441 ttgtcactac ctcactttgt cggttcagcc gacttgcaaa aaattttgct tttttgaccg
     1501 cttgtagatc attaattgac gatcaaacga ctaccgaaat agccgatggt gagcaacatc
     1561 atacccgaaa tcgaataaat aagcacccgt tttccacgcc aatgtaattt ccactgtcca
     1621 agtaactgaa tgctataaac aagccaagct aaaaaggaga aaattgcttt atgaatatgc
     1681 tccggctcga aaaagttatg caaataaacc acaccggaaa ataaagtgag cgtcagcata
     1741 gcttgtgcag ctaaggttaa agtaaagaaa tggcgttcaa ccgtcattag cggtggtaga
     1801 atctggcaaa agaacattgt tttgctcttt agttttctat ccagccattt gagttgaaaa
     1861 gcataaatta atgctaaaaa gaagagagca taagaaaata atgcaatccc taaatggaaa
     1921 agcagtcccg cattttcttg cacattacgg ataaaactac cttttacaaa tccagccacc
     1981 cccacactac aaatggcgaa agagtacaca ataattaaag gaaaccaaac cgttttccat
     2041 tttaacaacg caagtgtgac acaagccgcc ataatgaaac tcatcaaaga gattacattt
     2101 gttaccgtaa aattctgccc ttcgattaaa aataattcat tatataacac agaaaaatgc
     2161 aaaatcgtgg caagtaaccc aaacccaaag actaacatca tattaggctt tttattaact
     2221 gttgcggcat tttctaaatt cactagagta ggggcaaccc aaagtagcgc tagagcgtaa
     2281 gcaacaatgg ataaaagagg aagtaacata ttgtctcgaa tctcgtcaaa taagaataac
     2341 tatcagaatt ttaatcaaaa gtaaccgttt tagctagttt ttgctgttgc tagatcaaaa
     2401 attatcctaa aaaatgtgct tttcgcctta aattgaaccc taccttttct cggtaagatt
     2461 atctcactga aaacaataat tttcctttga ctaatttgct ttctatctgt aatatgcaca
     2521 ccctatgcaa aaggtaaaac taccccttac gattgaccct tacaaagatg ctcagcgtcg
     2581 cgttgattat gaaggctaca tttcaggtaa acttctaaca cgcttgggtg aatcagtatg
     2641 taatgtgcaa agtgatgcac aagtcactct ctcgttatat gtcgatccac aacgcctaac
     2701 tgtgattaaa ggcacagcaa aagtagatgt ggaatttgat tgccaacgat gtggtgaccc
     2761 gtttacacaa acgctcgact gttcatttgt tttcagtccg gtgtctaaca tggatcaggc
     2821 ggacatcttg cccgaaattt atgaacctat cgaagtaaac gagttcggtg aagtaaattt
     2881 actagatatg attgaagatg aatttattct tgaattacct ctagtcccga tgcatagtga
     2941 agaacactgt gaagtgtccg taagtgaaca ggtatttggc gagttgccgg aagaactggt
     3001 acaaaaacca aacccgttcg cagtattagc taatttaaag aaaaactaga tctaggagaa
     3061 agcccgtggc tgttcaacaa aataagaaat ctcgttcacg tcgtgatatg cgtcgttcac
     3121 acgatgcatt aacaactgca gcagtttcag tagataaaac cagtggtgaa actcactttc
     3181 gccaccacgt aactgcagac ggttactacc gtggtcgtaa agtaatcaac aagtaattcc
     3241 tttcgaggtt tatcttggtt gatatcactc ttgcagtaga tgtgatgggc ggggactttg
     3301 gtccccgcgt tactattcct gcactggaaa aagccttaaa acaaaatcca agcctttctt
     3361 ttttattatt tggtgatgaa caccaaatag cccctttatt acaaaaacac acactactca
     3421 accaccccaa aatccaaatt catcataccg aacaagtgat tgaagctgat gttccgttca
     3481 ctactgcaat ccgccaaagc aaaaacagct ctatgcggtt agcgattgag gcagtaaaag
     3541 agggcaaagc acaaggttgt gttagtggcg gtaacactgg tgcgttaatg ggattggcaa
     3601 aattattgat tgaaccatta ccaaatattg aacgccctgc actcacttcg ctaattccta
     3661 ccctcaacgg caaatccagc gtaatgttag atttaggggc aaatattgaa gtaagcaatc
     3721 accagctaca acaatttgca gaaatgggaa acctgtttgc tcaagtaatg cttgatttag
     3781 tttaccctcg cctgtcttta ttgaatattg gtacagaaga aaataaaggc acggcacaac
     3841 ttcaggcagt gcatcaactg ctgaaaaaca gacaagactt aaattacacc ggctttattg
     3901 aaagcgataa attaaccagc tatctcactg atgtgattat ttgtgacggc tacaccggca
     3961 atatcgcgtt aaaagcgttg gaaggggcag ctaaaaatat tatttctctc tttaaaaaag
     4021 agaaagccga ttccaatatt tgccgtaaca ccaaacgata tttactgaaa gcgatgttct
     4081 accgttacta ccgcaaattg caacaaatta accctgaccg ccataacggt gcgaccttgc
     4141 tcggcttatc taaagtagtc gtgaaaagcc acggcggggc aaatatcaat gccttttatt
     4201 acgctattga ttatgcggtg caacaaattc aaggcgacat tccaaataaa atcctagagg
     4261 gtttaaccca aaaataagcg aactcaactg ttcgcttatt ttcatttctt gtttcactta
     4321 aagatacaag cggtcaaatt tgcaaaaaaa tttacccatt caaccgcttg tgtttagcct
     4381 tttaattttg ccactcgtaa actaaccgca ttgcggtgtg catctagcaa ttctgcactt
     4441 gccattcgtt ccaccgtttc ggccaaggct agaaagcctt gtggtgtcag ctcctgcacc
     4501 gtcattcgct tgctaaaatc agctaaacct aagctcgaat aggttttagt gtagccgtaa
     4561 gtcggtaaaa cgtggttagt gccgctagca taatccccca tactttccgg cgaatacgcc
     4621 cctaagaaaa tcgagccggc attatctaaa tccgccaaca acgagcgagc attttcagtt
     4681 tgcacaatta aatgctcggg tgcatattta ttactaattt cgaccgcttg ttgcaggttt
     4741 tccgcaataa aagtgcgact gtgagccaat gctttacggg cagtttcggc acgaggtaaa
     4801 accgccacct gcttttctaa ttcttcatcg actgcccttg ccaagctctc acttggtgtg
     4861 actaaaatca cttgggaatc ggctccatgt tctgcttgag agagtaaatc gctcgccaca
     4921 aatgcagggt cagcaaactc atcggcaatc accaacactt ccgacgggcc tgccggcata
     4981 tcaatcgccg tgccttcttg cacaacttgg cgtttcgcct ccgtcacaaa cgcattgccc
     5041 gggccgaaaa ttttatccac tttcgctacc gtttgtgtgc catttgccat cgcaataatc
     5101 gcttgagccc ccccaactgc gtaaatcgtt tccaccccac acaaatgggc ggtgtagaga
     5161 atttcatcgg caatcggcgg tggtgagcaa agcacaatct tgttacaacc ggcaattttt
     5221 gccggcactg caagcattaa cacggtagag aaaagcgggg ctgaaccgcc cggaatataa
     5281 agccccaccg cattaatcgg gcgagtgatg acttggcaac acacccccgg ctgggtttca
     5341 atatccacct cttgattttg ctgtgccttg tggaaagcct cgatattcgc tttcgcattt
     5401 tgaatcgctt gcttaagctc tggtgaaata cggctctgtg cttgctgaat ctgctgttct
     5461 gatacaacta agctctctaa ttttacttta tcgaactttt cagctaattc aaataatgcc
     5521 ttatcgccgt tggcaattac attcgcttta atttcattaa ctgccgcttt aatactctcg
     5581 ccaaccacct gtgccggacg ggcaagatat tgctgctgct cagtttctgt taaattgttc
     5641 caaattaggg tttgcatatt tattcctttt acgccaacat tttctcaatc ggtaaaacca
     5701 atacggaact tgcgcccatt tcttttagct gctccattgt ttcccagaac aggttttctt
     5761 ggctgacaac gtgcattgcc acacgggttt ggtcgttagc taacggtaaa atagtcgggt
     5821 tttccacacc gggtaataaa gcggtaattt ccgccagttt gtctttgggg gcgtgcagca
     5881 taatatactt agattcgttc gcctgttgca caccttgaat gcgggttaat aatttatcca
     5941 ctaacgcttg tttttccgct gaaagtggtt cttggcgttg aattaggcaa gcagttgaac
     6001 ggtaaatcac ttcaacctct tttaatccgt tcgcctctaa tgttgcacct gaagaaacca
     6061 agtcacaaat cgcattcgca attccggcac ttggagcaac ttcaaccgaa ccggtgagta
     6121 aaatactttt aaacggcaca ttttgctctt tcatataccg ctttaataaa ttggggtaag
     6181 aagtggcaat cacagcatct tctaaatctt tgatattgtt ataattttta tcacgatcaa
     6241 tagctaacga taaacggcag ccaccaaaat ctaactgacg aagtttttta taggcaacat
     6301 tctcaccagc acttaatcgc cctaattcca cttcctctaa tacattttca ccgataatcc
     6361 caagatcaac tacgccgtca aaaactaagc ctggaatgtc gtcatcacgc acccgtaaaa
     6421 tttcaatcgg catattttct gaataggcaa tcaggcgttg atcgttccaa atgattttca
     6481 cgccacattg tttaagcaac tcactacatt cttggcttaa gcgacctttt ttctgcatcg
     6541 caattcttaa tcgattttgt gttgtcattg ttgtttcctt cttatgtttt aaattgtaaa
     6601 aataaaaaaa cctctcgaaa tcacttccga gagggttaaa tttatgctgc gtttaggcgt
     6661 actcggaagt cttatcttcc gcacatacca aatgcccgaa agattattca ggtaaatgat
     6721 ggtggtgatg agtacgaata aaagccattt tgttgttctc caaactaaat tgctttaaaa
     6781 gatacgctta aattttggca atgacaagtg ttttttgcga aaaaattgct atttttcatc
     6841 tctctaaaac aactatcgca aacgtttgcg taaagcggta taatttgcct gattttttgc
     6901 aaattcaaca aagtaggaat aacactatgc aaatcagcct caaaaagatc tactccggca
     6961 aagtccgtga tctctacgaa atcgatgaaa aacgtatgct tatggttgcc accgaccgat
     7021 tatctgcctt tgatgttatt ttagacgatc ctattcctcg taaaggcgaa atcctcaccc
     7081 aaatctccaa cttctggttc aacaaattag cccacattat gccaaaccac ttcaccggcg
     7141 acagtgtgtt tgacgtgtta ccgcaagaag aggcagaagc tattcaacat cgtgcggtgg
     7201 tttgcaaacg cttaataccg gtgaaaattg aatcgattgt gcggggttat ttaaccggct
     7261 ccgggctgaa agattaccaa caaaccggca cgatctgcgg cttaacattg ccggaaggct
     7321 tggttgaggc cagcaaatta ccgcaaccga tcttcacacc gtccagcaaa gccgaggtgg
     7381 gcgatcacga tattaatatc agctacgaag agtgtgaacg ccagatcggt caagaacttg
     7441 ccgccaaagt gcgtgatgcc gctctaaaac tctacactga agcggcaaac tatgccctga
     7501 ccaaaggaat tattatttgc gacaccaaat tcgaattcgg cttagacgaa aacggtgaac
     7561 taacgctaat ggacgaagtc ctaaccccgg attccagccg tttttggtca gttgaaacct
     7621 accgagaagg cacaaatcca ccttcatttg ataaacaatt cgtgcgtgac tggctggaaa
     7681 atagcggttg gaacaaacaa cccccagccc cgaaaatacc ggcagaggta attgaaaaaa
     7741 ccgtagcgaa atatcaagaa gcattggatt tattaaccaa ataacaccac aagcggtcaa
     7801 atttacgcta ttttttgcaa aacaaaaacc tgtaagccaa cacttacagg ttttttagtt
     7861 agtggtaaaa agtgcggtta ttctaccgca cttttgcaaa attttgtgta aatctgaccg
     7921 cttgttagcc ttgcgaagaa atacgtttca tatctgtcat ataaccacgt aattcttgac
     7981 cgattaactc gattgggtgg ttacggattg cgtcattcac atcacgtaag gtaacgttgt
     8041 cgatttccac tgccggagtt ggttcaccta aatcgccttt ctctaacgtt gggataattt
     8101 tctccgctaa aatcggggtt gcaacgtgag agaataagta gttaccgtat tctgcggtat
     8161 ctgaaattac cacgttcatt tcatataaac gcttacgagc gattgtattt gcgattaacg
     8221 gtaactcgtg tagagactcg tagtaagccg attcttcata aataccggct gaaaccattg
     8281 tatcaaaggc taattcaacc cctgctttca ccattgcaac cattaacaca ccgttatcaa
     8341 agtattcttg ctcagaaatt ttaataccgt ctgcttgtgg tgcgttttca aaggctgttt
     8401 tacctgtttc ttcacgccat tttaataagt tggcatcgcc gtttgcccag tctgccatca
     8461 tcgttgatga gaactcacca ctgatgatgt cgtccatatg tttttcaaat aagaacgcta
     8521 attcttcttt gatttgctca gaaagctcga acgcacgcaa tttggcactg tttgataagc
     8581 gatccatcat taaggtgata ccgccttgtt ttaacgcttc ggtaatggtt tcccaaccgt
     8641 attggatcaa tttacctgcg taagccggat ctttaccttc cgacactaat ttgtcgtagc
     8701 acacgattga acctgcttgt aacataccgc aaagaatggt ttgttcaccc attaaatcag
     8761 atttcacttc tgctacgaat gaagattcta atacgcccgc acggtcacca ccggtagcac
     8821 ttgcccacgc tttcgcaatg gctaaacctt cgcctttagg gtcattttcc gggtgaacgg
     8881 caattaaggt tggcacaccg aaaccacgtt tgtactcttc acgcacttcc gtgcccgggc
     8941 atttcggagc ggtcatcaca accgttaaat ccggacgaat ttgctcacct tcttccacaa
     9001 tgttgaaacc gtgtgaataa ccaaatgccg caccttgttt cattaacggc attacatcgg
     9061 caactacttt agagtgctgt ttgtccggcg ttaagttaat gactaaatcc gcttcaggaa
     9121 ttaattgctc gtaagtaccc accacaaagc cgttttcaga agcacgttta aatgaagcac
     9181 gtttttcagc aatcgcttcg gcacgtaaag cgtaagcaat atctaagcct gaatcacgca
     9241 tatttaaacc ttggtttaaa ccttgagcac cacaacccac aatcacgatt tttttgcctt
     9301 ttaagaaatt gcagccatct gcaaattcat cacgatccat aaagcggcaa cgacctaact
     9361 ggtctaattt ttgacgtaaa tttaaagtgt tgaaatagtt agccattttt taatccttat
     9421 ttgaattaat gagattgata tgatgttttg tttgcacatt gttatagttt gatttgatta
     9481 taccttaacc taacattgcg taaattgaaa atattaatat ttcatattgc ataaaatgca
     9541 acttgcaaaa attttgccaa atttaaccac ttgcaatctc tacgataaag tagaaaataa
     9601 ccacctaatt taatagaaga tcaaaaaatg aaaataaaca gaatcatttt acaaagctgt
     9661 agcgaatgtg ggcaacaagt gcgagtcccg ctcacgtcaa atggcaatgc cgtttgcccg
     9721 gtctgccata atatattacg caaaagcaat acttggagct tgcaccgtag tgcttttttg
     9781 gcattagcca ttttaatttt gcttcccttc gcacttactt ttcccttgat gagcattgac
     9841 ttactcggca tcaaaattaa tgctaccgta tgggacggta tttggaagat ggcaacggag
     9901 ggctaccctt acaccgcttt tatggtgcta gtctgcgcgg taataatgcc gattgcattt
     9961 gtattgctaa ttttaaccat tcagctacaa cgtattattc gccaacgccc ccgttacacg
    10021 ctgattttct taactaaaat aaaagaatgg gtaatgcttg atgtctattt agttgctctt
    10081 gcggttgccg cttttaaaat tcgagattat gccgatctac aattcgatat caacttaatc
    10141 gcctttgtgt tggtaacact cttaaacacc ctacttttta ttaaaaccga gccaaaacaa
    10201 gcatgggaac gtttttaccc agaatatcac gccttgccgt ttgatcaccc aagcaatcca
    10261 acactttgcc cgacctgtga atattgcttt gatgaaacta ttttagactt aaaaggacgg
    10321 caacgctgcc ctcgttgtga aagcaattta tctatttccg acaacgtaaa aatacaacgg
    10381 gtttgggctt gcttaattgc agggactatt atgatgattc cggcaaatat tttcccgatt
    10441 tcgacaactg aactggcagg tcaggtttcg gcagattcat taatgtccgg cgtgcttctg
    10501 tttatggaaa tgggtagcta caccgtggca gcgattgtgt ttatcgctag tattgcggtg
    10561 ccggtgagca aaattaccat tattttttat ctcttgctgg caattcatta caagtggaaa
    10621 cacccgattc attggcaaat gaaactacta cactacgtcc attttgtcgg acgctggtca
    10681 atgctggatt tattcgtgtt atcattgatg atgtcgctac tcgaacgagg gcagattctc
    10741 agtttctcgg taggggaagc cgctttctat tttggagcag ccgtattctt aacgatgttt
    10801 gcctctgcaa atttagattc cagaatgttg tggaagattc atactgtcca gaaaacatcc
    10861 taaataaaga ttttccgata aataatacat aacatgcaaa gtaagaaaag tagtacgtaa
    10921 cccaaaatct caatccctat tgagtaagaa agagccgata atgtagcacc gatagccaga
    10981 aagaaattag caaatataaa atagtcttta ctatatttac ttgaggcaat tagggtatcc
    11041 attgcagtac taaagaacat ttccaaatac gtgacaccca ctaatacaat aaataatgtt
    11101 actatatttt gtgaaataaa cataaataag ccacttaata taatacaaat aataaaagat
    11161 aaaattagag aaaattgatg tgttatcctt tttgttacag atttatataa tcttatttgt
    11221 aatagagcga tagcaatact atttaaaata acccaaatag gatataaatt aaaattaccc
    11281 cattgtttta agatagttgg tatcagttgc tcatacaaca aataacacat actgaataat
    11341 atataggaaa gaaatacaaa aacaaagaaa tctttatcaa aactcttaaa tgatataaaa
    11401 aacctttcct ttctaattgc tatcttagca tttactttaa gtgaaaataa tgtaaataag
    11461 atagatat
//
LOCUS       DANLRW010000082        11331 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.082, whole genome shotgun sequence.
ACCESSION   DANLRW010000082 DANLRW010000000
VERSION     DANLRW010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11331
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.082"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            41..1837
                     /locus_tag="PXA71_001842"
     CDS             41..1837
                     /locus_tag="PXA71_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate-specific subunit IIBC"
                     /protein_id="HDL5105929.1"
                     /translation="MDFLTEILLFLKDQVLNKAPFLLGIVACLGYILLKKDTSTIIKG
                     TIKTIVGFMIVQAGSGFLVTNFKPVIDGLAKYHQLTGAVIDPYTSMQSTIQTMGENYA
                     WVGYAVIGALFLNILLVVFRRLTGIRTIMLTGHIMFQQAGLVAVFYMIIGASMWETII
                     YTSVLMALYWGISSNIMYKPTQAVTGGAGFSIGHQQQIASWIAVKLAPKLGDKDDTVD
                     KMKLPNWLNIFHDSISATALVMTIFFGIILLSFGLDNLKELAGKTNQFMYILEMGLKF
                     AVAIQIIVTGVRMFVAELSEAFKGIAERLIPNSVLAIDCAAIYAFSPNAMVFGFMWGA
                     IGQFVAVGGLLAVGSPVLIIPGFIPMFFSNATIGVFANQFGGWKAVMKICFVMGIIEV
                     LGSAWVIQMLASQGTTFNGWMGMADWALFFPPILQGIISIPGFFFVIVAAAMVYMFFA
                     SKQLRAEEAEAAARGITLEQLDGYGLDEVKAEPKAEAVVQQAVENAENSANPIRILAV
                     CGSGQGSSMMMKMKIKGYLDKRGIPNIMDSCAVTDYKGKLSEVDIIVSSKHLANEIEV
                     PEGKAVLGVQNMLNPNSFGDELVELINQHNAK"
     gene            1917..2978
                     /locus_tag="PXA71_001843"
     CDS             1917..2978
                     /locus_tag="PXA71_001843"
                     /inference="COORDINATES: protein motif:HMM:NF012376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDL5105930.1"
                     /translation="MKKILSTLFMLSAVSVAVAKEVNIKLLGTSDVHGRVVPWSYGAD
                     VEDKSGSFAQIATYVKEVRANHKNVLLFDIGDAIQDNQVEEFAKTLDKAKNNPVPKVL
                     NAMNYDIFILGNHEFNFGMPNLDAILKDINAKILTANFYHKDGKRYVEPTTIIERDGV
                     KLGIIGLTTPMSAIFEKDTGHLDAMKFTSPIEEAKAQIADLKAKGVDAIIVLAHMGIE
                     NENNIPDTGVADLVNAVDGIDVIIAGHMHKDVPSETIKNTLITEPHRYGTVVSEVDLA
                     FDVNDKGEVKLLSKTAKTVPVKKLASDPEIEKIYQPYHNELRALNNVKIGETAQDLIP
                     QGKITVYRLLSRKTPECPH"
     gene            2966..3430
                     /locus_tag="PXA71_001844"
     CDS             2966..3430
                     /locus_tag="PXA71_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HDL5105931.1"
                     /translation="MSSLIHDVQQHYSGADVVSFAFDYETVRLDKGDIKKKDIIYNYR
                     YAGGDVSMYELTGKQLKQYMEWSADYFDTIQAGDKDYRYNAVRGKSKYVTFDLFGGVS
                     YNIDLRNPSGSKIVDLKLANGSLITDDGKYKVGMNSYRFGQLTKKGGIWEGQ"
     gene            3461..3577
                     /locus_tag="PXA71_001845"
     CDS             3461..3577
                     /locus_tag="PXA71_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ser/Thr protein phosphatase"
                     /protein_id="HDL5105932.1"
                     /translation="MGAEKGTIQNMLIDYITNVKGGKIEGKSHNRWAIIGLN"
     gene            3593..4060
                     /locus_tag="PXA71_001846"
     CDS             3593..4060
                     /locus_tag="PXA71_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDL5105933.1"
                     /translation="MNLKQSLIENNSILLNQSAANWEDAIKIGTDLLVKAGTIEPRYY
                     DNIVSKIKEMGPYIILAPGLAMPHARPEEGVIKTSFALVTFDTPIYFEGEDEPVHVML
                     TLAGSDSDQHMQGLVEITQVLDDPESDTGVDLDKIRRCKTAEEVYAVIDQALA"
     gene            4115..4795
                     /locus_tag="PXA71_001847"
     CDS             4115..4795
                     /locus_tag="PXA71_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HDL5105934.1"
                     /translation="MSKPLLQIALDSLSLEKAVADAKQAENQVEIIECGTILAFAEGM
                     KAVSTLRVLHPNHIIVCDLKTTDGGAILAKMAFEAGADWLTVSAAAHPATKAACKKVA
                     DEFNAAHPELKVKKEIQIEIYGNWTVEKDAKEWVELGVTQAIYHRSRDAELAGKGWTT
                     EDVELMKQLSDLGIELSITGGIVPEDIHLFKEIKNAKAFIAGRALVGEKGKQTAEAIR
                     VEIDKYWN"
     gene            complement(4863..6005)
                     /locus_tag="PXA71_001848"
     CDS             complement(4863..6005)
                     /locus_tag="PXA71_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDL5105935.1"
                     /translation="MKIVIAPDSFKESLTALEVAQAIQQGFARVFPEAEYQLVPMADG
                     GEGSVQSLVDATHGSLQKISVIAPLANEVEGFFGLSGDQKTAFIEMAAASGLHLVPME
                     QRNPLVTTSYGTGQLIKAALDLGVEKIILGIGGSATNDGGVGMLQALGAKFLNAEQRE
                     IGFGGEALSQIQQIDLSGLDSRLKQVEFEVACDVDNPLCGERGASAIFGPQKGATPEM
                     VKMLDHALLHFAETVKSQLGIEIAEKAGAGAAGGMGGGLLLLPNVTLRSGVQIILEAT
                     DLAEKLADADLVVTGEGRMDAQSIAGKTPIGVAKVAKQFGKPVIAIVGSLKEDYPVVY
                     QHGIDAVFPIIRQVSNLEAVLKSGKENLISTAENVARLWKISALQE"
     gene            complement(6015..7394)
                     /locus_tag="PXA71_001849"
     CDS             complement(6015..7394)
                     /locus_tag="PXA71_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005757929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family permease"
                     /protein_id="HDL5105936.1"
                     /translation="MSGIALILIFLVAIIIMIYMIAKWKVHPFLALMSISIALALVAG
                     LPLAKIPTIVGEGFSNTFKSIGIVIIFGAIIGTILEKTGAALKLADMVVKVVGQKRPE
                     LAMLIMGWVVGIPVFCDSGFVVLNPIREAIRKKILANPVGMAVALSAGLYASHVFIPP
                     TPGPIAAAGAVGLSHNLLLVIGMGFVVSIPVLIASYFFAKYVGKQVSVMEEAQADQVI
                     SQSYEDLIKQYGKLPSGFLSFAPIFMPIILMAIGSIAKIAGVSGDFGVFLQFVGNPII
                     ALAIGVIFAIFLLVSSGKMAEFDSLTNDTLKLVGPILFITAAGGVLGNVITQAGFVDY
                     IKQNAHIISTAGIFFPFLISAILKTAQGSSTVAIITTASIMGMFNAPDSLMNALGLTS
                     EMAAALTVMAIAAGSMCVSHANDSYYWVVTNFTKLTPQQGYRTQTTLTFIMGVVGMLT
                     VYLLSLILL"
     gene            complement(7516..8610)
                     /locus_tag="PXA71_001850"
     CDS             complement(7516..8610)
                     /locus_tag="PXA71_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5105937.1"
                     /translation="MKLNQAIADRIVKRTMQIIPNSVNVMDSEGVIIASGDVGRIGQR
                     HTGAVIALRNDQAVEIDENLAKQWCDEVKAGINLPLHYLGSTIGVVGISGQPQQVRQY
                     AQLVKMAAELIMQQAFELEQERWQRRYREEFVRALLKGSLSTAEIQQQAVFFGQDFAK
                     PLSVMVIKIHGSTAEKLQRLIDFFEHYFPSLLTAVIGLDKIALLNHLSNEKSLIRNAL
                     NKLNDPDISFKTVVGLAVENLSQTHISYQTACHTLNYAEQIQSRKQIIHFEDFKLPAL
                     LHSFSHSWEAKTLLSPFQALLVSDKKQVLLKSLRYYFFANCDLDHAAKKLFIHPNTLR
                     YRLEKIEQITGLSFNNIEQKFVLYLGAVLS"
     gene            complement(8714..9166)
                     /locus_tag="PXA71_001851"
     CDS             complement(8714..9166)
                     /locus_tag="PXA71_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HDL5105938.1"
                     /translation="MNLKAVAVSALAMSSVAMADIADVKPVVFESKFDFQTTVTTLTN
                     TLKEKGMTIFAEIDHQAAAKQAGLEMQPATVLVYGTPKAGTPLMVKDPMLALQLPLKV
                     LITEPNKGKVEVMLNRADQVVAHANTDYADVENNLAKAEKLIKATVAK"
     gene            complement(9187..9939)
                     /locus_tag="PXA71_001852"
     CDS             complement(9187..9939)
                     /locus_tag="PXA71_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDL5105939.1"
                     /translation="MHFEKRSHWSGELGREMSFNVYGHAGKPVIVFPSSGGNENEYGN
                     FGMIEACRSFIERGLIKFYTPDSYDAESWLSKHKSGHDMALAHNAYDRYIIHELVPLI
                     RHESHWNGTMIATGCSMGAFHTVNFALRHPDLFDIAIALSGVYDARFFSGEFYGDKAV
                     YFNSPIDYVWGQNDDWFLDRYRQNHYVIAVGQGAWEEQHIEDTRRLQEAFNAKGIDAW
                     FDYWGFDIDHDWPTWRKQMPYFLGKLEEQGII"
     gene            complement(9950..11134)
                     /locus_tag="PXA71_001853"
     CDS             complement(9950..11134)
                     /locus_tag="PXA71_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDL5105940.1"
                     /translation="MSRPLNFVMISPHFPTNFETFAIRLREAGFNTLGIADAPYESLS
                     ENLRHSLTEYYRVDNMEDYEQVYRAVAYFAHKYGRIDRIESHNEYWLELDAKLRTDFN
                     VFGYKSDDMLSIKTKAQMKEVFRKTGLKVAQGRVFKDDEDARKLAKQLKFPVIIKPNS
                     GVGASDTYKIKTAEELEAFFGYKTPTVEYIMEEFIDGDIITFDGLTDKEGNIVFYSSL
                     EYSEAVLDTVSKDGDMFYYVPCEISPKLVEMGKQCVKAFNVKERFFHFEFFRVKGSKK
                     EELLPLEINCRPPGGLTIDMWNYANDFDVFREFANIVKENKFYADIQHPWNVVYISRK
                     ANQNYVNSIEAVCEKFAGNIISVQSVPGVFAKVMGEQGILARTETMEQMREIAQFAQA
                     KQ"
BASE COUNT         3280 a         2591 c         2359 g         3101 t
ORIGIN      
        1 gttttttagt tctattaatc tctcaacaaa gaggccccct atggactttt taaccgaaat
       61 tctccttttc ttaaaggatc aagtgctgaa taaagcaccc ttcttactag gtatcgtagc
      121 ttgcttaggt tacattcttc ttaaaaaaga cacttctacg attattaaag gcacaattaa
      181 aacaattgtc ggttttatga ttgtacaagc cggttcaggt ttcttagtaa ccaactttaa
      241 gccggttatt gatggcttag ccaaatatca ccaacttacc ggtgcagtaa ttgaccctta
      301 caccagtatg caatcgacca ttcaaaccat gggcgagaac tacgcttggg ttggttatgc
      361 cgtaattggg gcgctgttcc tcaatattct attagtggtg ttccgccgtt taaccggtat
      421 ccgtaccatt atgctcaccg gtcacattat gttccaacaa gcaggcttgg ttgcggtgtt
      481 ctatatgatc atcggagcgt caatgtggga gaccattatc tacacctcag tgttgatggc
      541 tctttattgg ggtatttcgt ctaatattat gtataaacca acccaagcgg taacaggcgg
      601 tgcaggcttc tcaattggtc accaacaaca aattgcttct tggattgcag tcaaactcgc
      661 accaaaactt ggcgataaag acgatactgt agataaaatg aaattgccta actggctcaa
      721 tattttccac gacagtattt ctgcaaccgc attagtaatg accatcttct ttggaatcat
      781 cttactttca ttcggtttag ataacctcaa agaacttgct ggcaaaacca accagtttat
      841 gtacattctt gaaatgggct tgaaatttgc ggtggcaatt caaatcattg taaccggcgt
      901 acgtatgttt gtagctgagc tttcagaagc cttcaaaggt attgctgaac gcttaattcc
      961 aaactcagta ttagcgattg actgtgccgc tatctacgct ttctcgccaa atgcgatggt
     1021 attcggcttt atgtgggggg ctatcggtca atttgtggca gtaggcggct tgcttgcagt
     1081 aggctcaccg gtgcttatta ttccgggctt tatcccgatg ttcttctcta acgcaaccat
     1141 tggtgtgttt gcaaaccaat ttggtggttg gaaagcagta atgaaaatct gttttgtgat
     1201 gggtattatt gaagtgcttg gctcagcttg ggttattcaa atgcttgctt cacaaggcac
     1261 aacctttaac ggttggatgg gtatggctga ctgggcattg ttcttcccac caatcctaca
     1321 aggtattatc agcattccgg gcttcttctt tgtaattgtg gcagcagcaa tggtttatat
     1381 gttcttcgca tctaaacaac ttcgtgccga agaagcagaa gcggcagctc gtggcattac
     1441 acttgaacaa ttagacggct acggcttaga tgaagtaaaa gcagaaccaa aagcggaggc
     1501 agtagtacaa caagcggtcg aaaatgccga aaattctgca aacccaatcc gcattctagc
     1561 ggtgtgtggc tctggtcaag gctcatcaat gatgatgaaa atgaagatca aaggctatct
     1621 cgacaaacgt ggtattccga atattatgga ttcctgtgcg gtaactgatt acaaaggcaa
     1681 attaagcgag gttgatatta ttgtctccag caaacattta gccaacgaaa tcgaagtacc
     1741 ggaaggcaaa gcggtattag gtgtacaaaa tatgctaaat ccaaactcat ttggtgatga
     1801 attagttgag ctaatcaatc agcataatgc aaaataagta agtttagggg tgaataatca
     1861 cccctatcta tgctaaagat tgtaaaaact cacttcatca aacgaggaat tatccaatga
     1921 aaaaaatctt atccaccctg tttatgctct ccgcggttag cgttgccgtt gccaaagagg
     1981 taaacattaa actacttggt acctcagacg ttcacggacg tgttgtgccg tggagctacg
     2041 gggcagacgt ggaagacaaa tccggctcat tcgcccaaat tgcaacctat gtcaaagagg
     2101 tgcgtgccaa ccacaaaaat gtgttgctgt ttgatattgg cgatgcgatt caagacaacc
     2161 aagtcgaaga gttcgctaaa accttagaca aagcgaaaaa caatcccgtg ccgaaagtgc
     2221 tgaatgcaat gaattacgac atcttcattc tcggcaacca cgaatttaac ttcggaatgc
     2281 cgaatttaga tgcgatttta aaagacatca acgccaaaat tctcactgcc aacttctatc
     2341 acaaagacgg caaacgctac gttgagccaa ctaccatcat tgaacgtgat ggcgtaaaac
     2401 ttgggattat cggcttaacc accccaatgt cggctatttt tgaaaaagac accggtcatt
     2461 tagacgcaat gaagttcact tcgccgattg aagaggcgaa agcccaaatt gccgatctca
     2521 aagccaaagg cgtggacgcc attattgtgc tggcacatat ggggattgag aacgaaaaca
     2581 acattcccga caccggcgtg gcggatttag tgaatgcagt ggacggtatt gatgtaatta
     2641 tcgccggcca tatgcataaa gatgtgccga gtgaaactat caaaaatacc ctgattaccg
     2701 aaccgcaccg ctacggcaca gtggtttccg aagttgatct tgcctttgat gtgaatgaca
     2761 aaggcgaagt gaaactactt tctaaaaccg ccaaaaccgt accggtgaag aaactcgcaa
     2821 gcgatccgga aatcgaaaaa atttaccaac cgtatcacaa tgaactgcgt gccttaaaca
     2881 acgtcaaaat cggtgaaact gcacaagatt taatcccaca aggcaaaatc acggtgtatc
     2941 gattgctttc tcgcaagaca ccggaatgtc ctcattgatc cacgatgtgc aacaacatta
     3001 cagcggtgca gacgtagtga gttttgcatt tgactacgaa accgtgcgtt tagacaaagg
     3061 cgacatcaag aaaaaagaca tcatctacaa ctaccgctat gccggtggcg atgtgagcat
     3121 gtatgagcta accggcaaac agcttaaaca gtatatggaa tggtcagcgg attacttcga
     3181 caccattcaa gccggtgaca aagactaccg ctacaacgct gtgcggggta aatctaaata
     3241 cgttaccttc gacctattcg gcggcgtaag ctacaacatc gacctacgca atccaagcgg
     3301 tagcaaaatt gtcgatctaa aactggcaaa cggcagtcta atcaccgatg acggcaaata
     3361 caaagtggga atgaactcct accgctttgg tcagctcacc aaaaaaggcg gcatctggga
     3421 aggacagtaa atccccgtga tttgggaatc caaagtcgcc atgggggctg aaaaaggcac
     3481 aatccaaaat atgctgattg attacatcac caacgtcaaa ggcggaaaaa tcgaaggcaa
     3541 atcgcataac cgctgggcga ttatcggctt aaattaacga aagggaaaca ctatgaactt
     3601 aaaacaatct cttattgaaa ataactctat tttgctcaat caatcagcgg cgaattggga
     3661 agacgcaatc aaaatcggca ctgatttatt agtcaaagcc ggtacgattg aaccacgcta
     3721 ttacgataat attgtaagca aaatcaaaga gatggggcct tatattattc ttgcaccggg
     3781 cttggcaatg cctcacgccc gtccggaaga aggtgtgatt aaaacctctt tcgctttagt
     3841 gacttttgac accccgattt attttgaggg cgaagatgag ccggttcacg ttatgctaac
     3901 ccttgcaggg agtgactctg atcagcatat gcaaggcttg gtagaaatca cccaagtgct
     3961 agatgaccca gagagcgaca caggtgttga tttagataaa atccgccgct gtaaaacggc
     4021 tgaagaagtg tatgcagtaa tcgatcaggc attagcctaa tattctacaa gcggttcaaa
     4081 aacatcaata ttttgcaaat agaggaatac aattatgtcc aaaccattat tacaaattgc
     4141 ccttgattct ctttcactgg aaaaagcggt ggcggatgca aaacaagcag aaaaccaagt
     4201 cgaaattatt gaatgcggta ctattcttgc ttttgctgag ggtatgaaag ccgtttccac
     4261 cttgcgtgta ttgcacccaa atcacattat tgtgtgcgac ttaaaaacca ccgatggcgg
     4321 tgcaatttta gctaaaatgg catttgaagc cggtgccgac tggctcacgg tttcggctgc
     4381 ggctcaccct gcaaccaaag cggcttgcaa aaaagtggcg gacgaattta acgctgctca
     4441 cccggagcta aaagtgaaaa aagagattca aattgaaatc tacggcaact ggacggtgga
     4501 aaaagatgcc aaagagtggg tagaattagg ggtaacccaa gcgatttacc accgctcccg
     4561 tgatgcggaa ctagcaggta aaggttggac aacggaagat gttgagttaa tgaaacagct
     4621 ttctgactta ggcattgaat tatctatcac cggcggtatc gtaccggaag atattcacct
     4681 gttcaaagag atcaaaaacg ccaaagcctt tattgcaggc cgtgctttag tcggtgaaaa
     4741 aggcaaacaa actgccgaag ccattcgtgt ggagattgat aaatactgga actaatccgg
     4801 cattgaaacc caataaaaat ggcgttctct caaccggaac gccatttttt atctcatttt
     4861 ttctattctt gcaaggccga tattttccac aatctcgcta cattttcggc agttgaaatc
     4921 aggttctctt tgcctgattt taacaccgct tctaaattgc tgacctgtcg aataatcgga
     4981 aataccgcat caatgccgtg ttggtacacc acagggtaat cttctttcaa tgagccaact
     5041 atcgcaatca ccggcttgcc aaactgctta gcgactttcg ccaccccaat cggggtttta
     5101 ccggcgatag attgagcgtc cattcgccct tcccctgtca ccaccaaatc cgcatcggca
     5161 agtttctcag caagatcggt tgcctcaaga ataatttgca cgccggaacg taatgttacg
     5221 ttaggcagta gcagtaaacc accgcccatt ccaccggctg caccggcacc ggctttctcg
     5281 gcaatctcaa tgcctaattg ggattttacg gtttcggcaa aatgcaacag ggcgtggtcg
     5341 agcattttaa ccatttccgg tgtagctcct ttctgtggcc caaaaattgc cgaagcccct
     5401 cgctcgccac acagcggatt atcgacatcg caagcaacct caaattccac ttgctttaag
     5461 cgtgaatcca aaccgcttaa atcaatctgc tgaatttggc ttaatgcctc gccaccaaag
     5521 ccgatttccc gctgttcggc atttagaaat ttcgctccta aggcttgtag cattccgaca
     5581 ccgccatcgt tagtcgcact gccgccaatg ccgagaatga ttttttccac ccctaaatct
     5641 aaggcggctt taattaactg ccccgtgccg tagctggtgg taaccagcgg atttcgttgc
     5701 tccattggca ctaaatgcaa gccacttgcc gccgccattt caataaaggc ggttttttga
     5761 tcccccgaca agccaaaaaa gccctccacc tcatttgcaa gcggtgcaat tacgctgatt
     5821 ttttgcaaac tgccgtgagt ggcatcaacc agcgactgta ccgagccttc gccaccgtct
     5881 gccatcggta cgagctgata ctccgcctca gggaaaacac gggcaaaacc ctgttgaatt
     5941 gcttgagcca cttctaatgc ggtcaaactc tctttaaatg aatccggtgc aatcacaatt
     6001 ttcatcgtca atccttagag taaaatcaat gaaagcagat aaaccgtgag catacccacc
     6061 acacccataa tgaaagttag ggtagtttgc gtacgatagc cttgttgcgg agtcagttta
     6121 gtaaagtttg ttaccaccca gtagtagctg tcattggcgt gggaaacgca cattgagcca
     6181 gccgcaatcg ccattacggt taaggctgcc gccatttcac tggttagccc taaggcgttc
     6241 attaatgagt ccggtgcgtt gaacattccc ataatggagg cggtggtgat aattgccacc
     6301 gttgagctgc cttgtgcggt ttttaaaatt gccgaaatca ggaacgggaa gaaaatccct
     6361 gctgtactga taatatgagc gttttgcttg atgtaatcca caaagccggc ttgagtaatc
     6421 acgttaccta gcacaccacc ggcggcggta ataaagagaa ttgggccgac taatttcagg
     6481 gtatcattgg ttaagctgtc aaattccgcc attttaccgc ttgaaaccag taggaaaata
     6541 gcgaagatca ccccaattgc taacgcaata atcgggttgc cgacaaattg taggaatacg
     6601 ccgaaatcgc cacttacacc ggcaattttg gcaatcgagc cgatagccat taagataatc
     6661 ggcataaaaa tcggggcaaa gcttaaaaac ccacttggta atttgccgta ttgtttgatc
     6721 agatcttcat agctttggct gattacttga tccgcttgag cttcttccat cacgctgact
     6781 tgtttgccaa catatttggc aaagaagtaa ctggcaatca acacaggaat cgaaaccaca
     6841 aagcccattc cgatcacaag caggagatta tggcttaaac caacagcacc ggctgctgca
     6901 atcgggcccg gtgtcggagg aataaagacg tgggaggcat ataaaccggc acttaacgcc
     6961 accgccattc ccaccggatt ggcaagaatt tttttgcgaa tagcttcacg aatcgggttt
     7021 aacaccacaa agccgctatc acagaacact gggataccaa ccacccagcc cataatcaac
     7081 attgccagtt cagggcgttt ttgccccacc acttttacca ccatatcggc taatttgagg
     7141 gctgcaccgg ttttttctaa aatcgtgccg ataatcgccc caaaaataat cacgataccg
     7201 atacttttga aggtattact aaaaccttcg cccacaatag ttggaatttt ggcaagcggt
     7261 aaacctgcca ctaatgcaag ggctatcgaa atcgacatta aggctaagaa cgggtgaact
     7321 ttccacttcg caatcatata aatcattatg atgatagcga ccagaaagat cagaataagt
     7381 gcaatacctg acataataag tctcctcatt gtagaaaaat gaacttatta ttcggtattt
     7441 attgctaaaa agatttagat aaatttgcaa aaaatttgtt aaaaacgacc gcttgtttgt
     7501 atatttttac aatttttacg acagaaccgc tccaagatac agcacaaatt tttgctctat
     7561 gttattgaaa gataaaccag ttatctgctc aatcttctct aaacggtaac gtagcgtatt
     7621 tgggtgaata aacaattttt tggcagcgtg atccagatca caatttgcga aaaaatagta
     7681 acgcagactt ttcagtaaca cctgtttttt atcggaaacc agtaaagctt ggaacggcga
     7741 gagcaaggtt ttcgcttccc aagagtggct gaaactgtgc aagagggccg gcagtttaaa
     7801 atcttcaaaa tgaataatct gcttacggct ttggatctgc tcggcataat tgagggtatg
     7861 gcaggcggtt tggtaggaaa tatgggtttg cgataaattt tcgaccgcca gcccaaccac
     7921 cgttttgaag gaaatatccg gatcgttaag tttgtttagt gcattgcgga ttaacgattt
     7981 ttcgttggat aaatgattca gcaaggcaat tttatctaac ccaatcacgg cggtgagtag
     8041 gctcgggaaa taatgttcga aaaaatcaat caggcgttgg agtttttccg cagtagagcc
     8101 gtgaatttta atcaccatca ccgacagcgg ttttgcaaaa tcttgcccga aaaagaccgc
     8161 ttgttgctgg atttctgctg tgcttaggct acctttgagc aaggcccgca caaactcttc
     8221 ccgatagcgg cgttgccaac gttcctgttc caactcaaac gcttgctgca taatcagctc
     8281 cgccgccatt ttcaccaatt gagcatattg ccgaacttgt tgtggctgcc ctgaaatccc
     8341 cactacacca atggttgagc ctaaatagtg aagcggtaag ttaatgcccg ctttcacttc
     8401 atcgcaccac tgttttgcaa gattttcatc aatttcgacc gcttgatcgt tgcgtaacgc
     8461 aatcaccgct cctgtgtgtc gttgcccgat acgaccgaca tcgccggaag caataatcac
     8521 cccttcacta tccatcacat tgacggagtt gggaataatc tgcatcgtgc gcttgacgat
     8581 gcggtcggca atcgcttggt tgagtttcat tatatgattc ctactcattc ccaatactat
     8641 gaaaaatccc tctttcgagg gatttgcaaa ttatctacgc ttccacttcc tgagaataga
     8701 tcatagcgtg aagttatttt gccacagtcg ctttaattaa tttttccgct ttggcaaggt
     8761 tgttttctac atcagcataa tcggtattag cgtgagccac cacttgatcg gcacgattta
     8821 acattacttc gaccttgccc ttgttcggtt cggtaattaa cacttttaac ggtaattgca
     8881 acgctaacat cggatctttc accattaatg gcgtaccggc tttcggtgtg ccgtaaacca
     8941 atacggttgc cggttgcatt tctaagccgg cttgttttgc cgccgcttgg tgatcgattt
     9001 cggcaaaaat cgtcattcct ttttctttta aggtgttggt taaagttgtg actgtagttt
     9061 ggaaatcaaa tttactttca aataccaccg gtttgacatc ggcaatatct gccattgcca
     9121 cgctgctcat tgctaatgca gaaactgcga ctgcttttaa gttcatttct tttctcctca
     9181 aatagattaa ataatccctt gttcttccaa cttgcctaag aaataaggca tctgtttacg
     9241 ccaagtcggc cagtcatggt caatatcaaa gccccagtag tcaaaccaag catcgatccc
     9301 ttttgcgtta aaagcctctt gtaatcggcg ggtgtcttca atatgctgtt cttcccacgc
     9361 accttgtccg actgcaatca catagtgatt ttggcggtag cggtctaaga accaatcgtc
     9421 attttgaccc catacataat caatcggcga gttaaaataa accgctttat cgccataaaa
     9481 ctcaccactg aaaaagcgag cgtcataaac accgcttaag gcgatggcaa tatcaaacag
     9541 atccggatga cgtaaggcaa agtttaccgt atggaaagcc cccatactac aaccggtggc
     9601 aatcatcgtg ccgttccagt gcgattcatg gcggattaac ggcactagct cgtgaataat
     9661 ataacggtcg taagcattat gagctaatgc catatcgtgt ccggatttat gtttagataa
     9721 ccaagattcc gcatcgtaag aatcaggcgt gtaaaatttg attaagccac gttcaataaa
     9781 ggaacggcaa gcctcaatca ttccaaaatt accatactcg ttttcattgc cgccggagga
     9841 agggaaaaca ataaccggtt tacctgcgtg tccgtaaacg ttgaacgaca tttcacgacc
     9901 taattctcca ctccagtggc ttcttttttc aaaatgcata cttcacctct tactgtttag
     9961 cttgtgcaaa ttgtgcaatt tcacgcattt gctccattgt ttcggtacgg gctaaaatgc
    10021 cttgttcgcc catcactttg gcaaatacgc ccggtacgct ttgcacgctg ataatattgc
    10081 cggcaaattt ctcacaaaca gcttcaatcg aattcacata attttggttt gccttgcggg
    10141 aaatataaac cacgttccaa gggtgctgaa tatcggcata gaatttgttt tctttcacaa
    10201 tattggcaaa ttcacggaac acatcgaaat cgttggcgta gttccacata tcaatagtta
    10261 agccacccgg cggacggcag ttgatttcga gtggtaacaa ctcttctttt ttgctccctt
    10321 taacacggaa gaactcaaaa tggaaaaaac gctcttttac gttaaaggct ttcacacatt
    10381 gtttgcccat ttccactaat tttggcgaaa tttcacatgg gacatagtag aacatatcgc
    10441 catcttttga aacggtatct aataccgctt ctgaatattc aaggctggag tagaaaacga
    10501 tattgccctc tttatcggtt aaaccgtcaa aggtaataat atcgccgtca ataaactctt
    10561 ccataatata ttcaaccgtt ggcgttttat aaccgaagaa agcttctaac tcttccgcag
    10621 ttttgatttt gtaagtatcg cttgccccaa cccctgaatt tggcttgata atcaccggga
    10681 atttaagctg ttttgctaat ttgcgggcat cttcatcatc tttaaatact cgcccttgtg
    10741 ccactttcaa gccggttttg cggaatacct ctttcatttg ggctttggtt ttaattgaga
    10801 gcatatcatc gctcttataa ccaaacacat tgaaatcggt acgcaatttc gcatctaact
    10861 ccagccaata ttcattgtgc gattcaatgc ggtcaattcg cccgtattta tgggcaaagt
    10921 acgcgaccgc acgataaact tgttcgtaat cttccatatt atctacacga taatattcag
    10981 tcagggaatg acgcagattt tcgctcaatg attcataagg ggcatctgca attcccaatg
    11041 tattaaaacc ggcttcacgc aaacgaatgg caaaggtttc aaagttcgtt gggaagtgcg
    11101 gggaaatcat cacaaaatta agtggtctag acatagttct tcctttataa agtttgcata
    11161 ttattaaaat gattagaata gattttaggc taaatttatt aattttcaaa atgtattcac
    11221 acaagcaata atttttacaa taaattaact tttataaaaa ctcaatttaa catcagaata
    11281 aatcgtataa atttagtcag gtatttttac aaaaaaacca tatttatgat t
//
LOCUS       DANLRW010000083        11057 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.083, whole genome shotgun sequence.
ACCESSION   DANLRW010000083 DANLRW010000000
VERSION     DANLRW010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 11057)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11057)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11057
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.083"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            80..1057
                     /gene="manX"
                     /locus_tag="PXA71_001854"
     CDS             80..1057
                     /gene="manX"
                     /locus_tag="PXA71_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005612905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HDL5105941.1"
                     /translation="MSIAIIIATHGVAAEQLLKTTEMLIGEQEDVAYIDFVPGENAET
                     IMGKYQALVEGPLSHCDQVLFLVDMWGGSPFNAANRFQDGKSGMDVVAGVNIPMLVNT
                     CMARDDVESLEELVEVALEAGSTGIRSLNHQPEVAEVQTATPAQETAAVQQPEIVDDG
                     RRMTIALARIDDRLIHGQVATVWTKESKVNRIIVVNEGVAKDSVRTTMLKSVAPLGVT
                     AHVVDVPKMIRVYNNPEYADDRVMLLFTNPSDVLALIEGGVPLNSINVGGISHKEGKQ
                     MVSHSVAVDQNDIDAFKAIDAKGVELEVRKVSSDSRQYMMDLLKKHNLI"
     gene            1069..1869
                     /locus_tag="PXA71_001855"
     CDS             1069..1869
                     /locus_tag="PXA71_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005716709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HDL5105942.1"
                     /translation="MELSALQIVLLFLVACISGMGSILDEWQTHRPLIACTMIGLVLG
                     DVTTGVIVGGSLELLALGWMNIGAAVAPDAALASIVSTILVIVGRQDISTGIAIAIPL
                     AAAGQVLTYVVRAITVGFQHAADKSIEDGNLSRLDWLHRGALLLQAMRIAIPALIVAL
                     TAGTDAVQTMLNAIPEVVTTGLKIAGGFIAVVGYAMVINMMRAGHLMPFFFAGFVIAG
                     FTDFNLVALGVLGTVIAMVYIHMHPKYNKSQQVVVAAAPKNDLDNRLD"
     gene            1883..2719
                     /locus_tag="PXA71_001856"
     CDS             1883..2719
                     /locus_tag="PXA71_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005564636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HDL5105943.1"
                     /translation="MTTEIKKVTKSDLNAVVRRSNLFQGSWNFERMQALGFAYAMVPV
                     IKRLYPDPNGPGRKEAIKRHSEFFNTQPFVGAPILGVTIAMEEERANGKEIDNAAING
                     IKVGLMGPLAGVGDPIFWGTVRPVFAALGAGLALKGELLGPILFFALFNIVRLAARYY
                     GVVYGYKKGLDVVQDMSGGLLQKLTEGASILGLFIMGALVQKWTSINVPLVLSTIQKQ
                     DGTIEVTTVQSILDSLMPGLLPLLLTFACMWLLRNRVNAIWIILGFFVIGILGAATGA
                     LA"
     gene            2812..3297
                     /locus_tag="PXA71_001857"
     CDS             2812..3297
                     /locus_tag="PXA71_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HDL5105944.1"
                     /translation="MTNTILILFILLGLVFAIYDQVFMHKLKGTTLLEIRLKKQKTID
                     TWLLIGLIVLSISYGVQNQIQPFTLYLLATCIILSVYLAFFRSPRLLLKQHGFFFANV
                     FFNYDKIYQVNIAEGKADEKILVIDLHSGRRLLAYVENAEDLQPVVDFFGGYKKESEQ
                     K"
     gene            complement(3383..4174)
                     /gene="tpiA"
                     /locus_tag="PXA71_001858"
     CDS             complement(3383..4174)
                     /gene="tpiA"
                     /locus_tag="PXA71_001858"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDL5105945.1"
                     /translation="MARRPLVMGNWKLNGDKAFTKTLIADLKAELHGVEGCDVAIAPP
                     VMYLAHAEASLAGCGCGCSDKGLIALGSQNVDVNVKGAFTGDISPEMLKEFGAKYIII
                     GHSERRTYHKESDEFIAQKFKVLKDAGLVPVLCIGESEAENEAGKTEEVCARQIDAVI
                     NAHGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHKFIRDHIAAKSQAVADQVIIQY
                     GGSVNDANAAELFTQPDIDGALVGGVSLKAPAFAVIVKAAAAAKA"
     gene            4334..5248
                     /locus_tag="PXA71_001859"
     CDS             4334..5248
                     /locus_tag="PXA71_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HDL5105946.1"
                     /translation="MKLNYLYSPPQAVGRLKAEYADFIVREELGYELAGEGEFVAVKI
                     RKTNASTLFVGEKLAKFVGISEREMSYAGLKDRHNRKIRVGSLAGNHFELLLRDVAES
                     EELIYRLQQLQAVGFPNYFTEQRFGRDGHNLTQALRWANGEISVKDRKKRSFYLSAAR
                     SEVFNLVVSQRINDCLTQKILENDYVQLAGSNSFFCVKSDEIAETQARLAQQDLLLTA
                     PLIGERSLELECNPAEKAIIEQHAQLVALMQKERMAAARRAMLCKPQNLEWQFEQEGL
                     RLKFFLDSGSYATALVRELILLTEESEA"
     gene            5419..6207
                     /gene="surE"
                     /locus_tag="PXA71_001860"
     CDS             5419..6207
                     /gene="surE"
                     /locus_tag="PXA71_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HDL5105947.1"
                     /translation="MRILISNDDGFHAVGIQTLAKALRDAGHIVTIIAPDRNRSAASS
                     CLTLVDPLRVHRFDEYNYAVIAGTPADCVHLALNGLFDGKFAEKFDLVVSGINHGANL
                     GDDVVYSGTVAAALEGRHLPLPSIAVSLVGRKHSSFLDGENHFGTAAQVVLDLLEKME
                     TQRFPSNHVLNVNVPNLPYSELKGTMITRLGERSPAAEIVKQKDPRNADVYWIGVTGE
                     PLDESFGTDFYALNRDCVSITPIQVDMTAHKTIATLKGIFNETV"
     gene            6194..6778
                     /locus_tag="PXA71_001861"
     CDS             6194..6778
                     /locus_tag="PXA71_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5105948.1"
                     /translation="MKLFETIYDKTMQWSKHRFAAFWLSFVSFIEAIFFPIPPDVMLI
                     PMSMAKPQNAFKYAVYTTLASVAGGVIGYFIGLYATDWVQGVIANWGMQANFDKAKLW
                     FETWGVAVVFLAGFSPIPYKVFTICAGVMQMAFFPFVITAAISRFARFILVAKLSAWG
                     GKKYEQKIRRSIELIGWGTIVLAVVAYIIYTLMK"
     gene            6796..7296
                     /locus_tag="PXA71_001862"
     CDS             6796..7296
                     /locus_tag="PXA71_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDL5105949.1"
                     /translation="MKKSLFVLSLISFALVGCSSNSGESTSAVETTEANATWQSADSI
                     QTAPMPASMNQPIATQPTYQQPTYSAPQPISAAPAPMPVSSGSDSSQVETVGNCQVVR
                     DANNAPIYSQITKGCYTESHYTVGKSDTLYLIGYLTGTNANQIAQLNGLNTGSPLKVG
                     QVLRVR"
     gene            7309..7509
                     /locus_tag="PXA71_001863"
     CDS             7309..7509
                     /locus_tag="PXA71_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105950.1"
                     /translation="MNRTLLAFAISCAFLTACSSPTQPQVEDPNMLPAGTLQPIEGSG
                     ASQDSYSWPSDIQSTSMPDSMK"
     gene            7528..8808
                     /locus_tag="PXA71_001864"
     CDS             7528..8808
                     /locus_tag="PXA71_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDL5105951.1"
                     /translation="MKKQFILLPLVSAVLAACSSNNPAPVVNASGNNELSPGVMQPVD
                     VSAGAINSSGGWQSDIQSAPMPSSMNTTPVQTMPQPVSVPQPVATVPQPITNPVITEQ
                     PPQPTTTTKIVKKTKTVEKKVDQNFEIPRDANNAPMYNQIQKGFYDGSTYTVRKGDTM
                     FLIAYIVGKDVKEIAALNNMSEPYQLSVGQKLKTGKSATETITVEEKVTVPVEPQITY
                     QQGANGTTYASGGNITGPVKAGTANADVTPVNNGIKATTATAPAVTASVGTVNATEDR
                     TASTIRAIDGTASGAVQSSNTVSAPASSIKWQWPTSGRVISGFSSAEGGNKGIDIAGN
                     KGQDVRAAAAGKVVYAGNALQGYGNLIIIKHTDDFLSAYAHNNTIEVDEQETVKAGQK
                     IATLGSTGTNTNKLHFEIRYKGKSVDPARYLPRK"
     gene            9049..9240
                     /locus_tag="PXA71_001865"
     CDS             9049..9240
                     /locus_tag="PXA71_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105952.1"
                     /translation="MDPTEPSHRIYILLSEDRFQAEVFSTKLSESSMLLEAVKGGYIS
                     KDGKVRLLKKAEGWKIYYE"
     gene            9233..9799
                     /locus_tag="PXA71_001866"
     CDS             9233..9799
                     /locus_tag="PXA71_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HDL5105953.1"
                     /translation="MSETKIRCDWCKSSEIYMKYHDEEWGKPEFDSLKLFEKICLEGQ
                     QAGLSWITVLKKREAYRQAFHQFNPEKIAKMGEEEIDLLMQNTSLIHHRAKLEAIIKN
                     AKAYITMQQNGEDFSRFIWSFVNYQPQINDVPTLEAVPAHTETSKAMSKALKKRGFVF
                     VGETTCYAFMQSMGLVNDHLNNCVFKHK"
     gene            complement(9846..10076)
                     /gene="acpP"
                     /locus_tag="PXA71_001867"
     CDS             complement(9846..10076)
                     /gene="acpP"
                     /locus_tag="PXA71_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDL5105954.1"
                     /translation="MSIEERVKKIIVDQLGAKAEDVKPEASFIEDLGADSLDTVELVM
                     ALEEEFDIEIPDEEAEKITTVQSAIDYVQNNQ"
     gene            complement(10263..10940)
                     /gene="rpe"
                     /locus_tag="PXA71_001868"
     CDS             complement(10263..10940)
                     /gene="rpe"
                     /locus_tag="PXA71_001868"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDL5105955.1"
                     /translation="MSKNPYLIAPSILSADLARLGDDVAEVLKAGADLIHFDVMDNHY
                     VPNLTFGPAICKALRDYGIQCPIDVHLMVKPVERLIPDFAKAGADYITFHPEATEHID
                     RNLQLIRDLGCKSGLVFNPATPLSYLDYVMDKVDVVLLMSVNPGFGGQSFIPSTLDKL
                     KEVRRRIDESGYNIRLEVDGGVKINNIADIAAAGADMFVAGSAIFDQPDYQAVIAQMR
                     DELRKVG"
BASE COUNT         3254 a         2285 c         2309 g         3209 t
ORIGIN      
        1 atacattgtg tgaaataatt atcatattaa aatctcgccc cagtaaataa acaacttaaa
       61 aaaccgcaag gagtaacaaa tgagcattgc tattatcata gcaacccatg gtgttgctgc
      121 agagcaactt ctcaaaacaa ctgagatgtt gattggtgaa caagaagatg ttgcttacat
      181 tgactttgtt cccggcgaaa atgcagaaac gattatgggc aaatatcaag cattggttga
      241 aggtccacta tcacactgtg atcaagtgct gtttttggtg gatatgtggg gaggaagccc
      301 attcaacgcc gcaaaccgat tccaagatgg aaaatcgggt atggatgttg ttgcgggtgt
      361 gaatattcct atgttagtga acacctgtat ggctcgtgat gatgtggagt cgttggaaga
      421 attggtggaa gtcgcattag aagccggctc aaccgggatt cgttcactta atcaccaacc
      481 tgaagtggct gaggtgcaaa ccgctactcc tgcacaagaa actgcagctg ttcaacagcc
      541 tgaaattgtt gatgacggac gtcgtatgac cattgccctt gcccgtattg atgaccgctt
      601 gattcacggt caagttgcga cggtttggac aaaagaaagt aaagtcaatc gcattattgt
      661 ggtaaacgaa ggtgtagcaa aagatagtgt acgaactact atgctaaaaa gtgttgctcc
      721 tcttggcgta acggctcacg ttgttgatgt acctaaaatg attcgtgtct ataacaaccc
      781 tgaatatgcc gatgatcgtg taatgttact ctttaccaac ccaagtgatg tcttagcctt
      841 aattgaaggc ggtgtaccac tcaatagcat taacgtgggc ggtatttcgc ataaagaagg
      901 gaaacaaatg gttagccatt ctgtggcggt tgatcaaaat gatattgatg ccttcaaagc
      961 aattgatgcg aaaggcgttg aattagaagt acgcaaagtc tcaagcgata gccgtcagta
     1021 tatgatggat ttattgaaaa aacataactt aatctaaagg aaattactat ggaactttca
     1081 gcattacaaa ttgtgctttt attcctcgtt gcctgtatct caggtatggg ctcaattctt
     1141 gatgaatggc aaacccaccg tccgttaatt gcctgtacga tgataggctt agtgcttggt
     1201 gatgtgacta ccggcgttat tgttggtggc tcattagagt tattagcttt aggttggatg
     1261 aacatcggtg ccgctgttgc accagatgcg gcattagcct ctattgtctc aaccatttta
     1321 gtcattgtag gtcgtcaaga tatttcaact ggtatcgcca tcgctattcc gcttgcagct
     1381 gccggtcaag tattaaccta tgttgtgcgt gcaatcaccg taggtttcca acacgcagca
     1441 gataaatcaa ttgaagacgg taacttaagc cgtttagact ggttacatcg tggtgcttta
     1501 ttgcttcaag caatgcgtat tgccattccg gcattaattg tggcattaac agcaggtaca
     1561 gatgcggttc aaacaatgtt aaatgccatt cctgaagtgg ttacaaccgg gctgaaaatt
     1621 gccggtggct tcatcgccgt ggtgggttat gcgatggtga tcaatatgat gcgtgcaggt
     1681 catttaatgc cgttcttctt cgcaggcttt gtaattgcag gctttaccga tttcaatctt
     1741 gttgcccttg gggtattagg tacggttatt gcaatggttt atatccatat gcaccctaaa
     1801 tataacaaaa gccaacaggt agtggtggca gctgcaccaa aaaatgattt agacaaccgt
     1861 ttagactaag agggcattta aaatgacaac tgaaatcaaa aaagtaacaa aaagcgattt
     1921 gaatgccgtt gtacgtcgtt caaacttatt ccaaggttcg tggaactttg agcgtatgca
     1981 ggctcttggt tttgcgtatg cgatggtacc ggttatcaaa cgtttatatc cggatccaaa
     2041 tggcccgggt cgcaaagaag caattaaacg ccattctgag ttctttaaca cccagccatt
     2101 cgtcggtgca ccgattttag gggtaaccat tgctatggaa gaagaacgtg ccaacggtaa
     2161 agaaatcgac aatgccgcaa ttaacggtat taaagttggt ttaatgggac cattagccgg
     2221 tgtgggtgac ccaattttct ggggaactgt tcgccctgta tttgccgcat taggagcagg
     2281 cttagcctta aaaggtgagc ttttaggccc aatcctgttt ttcgccttat ttaacatagt
     2341 gcgtttagcc gcacgctatt atggcgtagt gtatggctat aaaaaagggt tagatgttgt
     2401 acaagatatg agcggcggtt tattgcaaaa attaaccgaa ggtgcttcaa tcttaggtct
     2461 gtttattatg ggggcattgg tacaaaaatg gacgagcatt aacgttccgc ttgtgctttc
     2521 aaccattcaa aaacaagacg gtaccatcga agttaccaca gtgcaaagca ttctcgacag
     2581 cttaatgccg ggcctactcc cattattatt aacctttgct tgtatgtggt tacttcgtaa
     2641 tcgagtaaat gctatctgga ttatcctcgg tttctttgtt atcggtatcc tcggcgctgc
     2701 aaccggtgca ttagcttaat tgcaaaattt tctgtgaaaa cgaccgcttg aacttgaaca
     2761 ttcaagcggt tttttatacg ctttagccca aataaattca cttgcttaat tatgaccaat
     2821 accatcctta ttctctttat tttacttggc ttagtattcg ccatttatga ccaagttttt
     2881 atgcacaaac tcaaaggcac aaccttactg gaaatccgtt taaaaaagca aaaaacaatt
     2941 gatacttggt tattgattgg tttaatcgtc ttgtcaatta gctatggcgt acaaaatcaa
     3001 atccagcctt ttacacttta cctgctggcg acttgcatta ttctgtcggt ctatctcgcc
     3061 tttttccgtt cccctcgctt gttgttaaaa cagcacggtt ttttctttgc gaatgtcttt
     3121 tttaattacg acaagattta tcaagtcaat attgcagaag gaaaagcaga cgaaaaaatt
     3181 ttggtaattg atttacatag cggaagaagg ctgcttgcct atgttgaaaa tgcggaagat
     3241 cttcaaccgg tagtggattt ttttggcggt tataaaaagg aaagtgagca gaaatagttt
     3301 gcgaacaaaa cacaagcggt catttttccc tgaaattttg caaaaaactg aggaaaaatg
     3361 accgcttgta aaatcggtta aattaggctt tagcagccgc tgccgcttta acgatcaccg
     3421 caaaagcagg cgctttaagt gaaacaccgc ctactaatgc accgtcaata tccggttgag
     3481 tgaataactc tgctgcattg gcatcgttta cagagccacc gtattgaatg atcacttggt
     3541 cagccactgc ttgcgattta gctgcaatat ggtcacgaat aaatttatgc actgcttgtg
     3601 cttgtgccgg agtcgctgat ttgccggtac cgattgccca aattggttcg taagcaataa
     3661 ctgcaccgtt gaatgcttcc acaccgtgcg cgttgatgac cgcatcaatt tgtcttgcac
     3721 acacttcttc agttttacct gcttcatttt cggcttcaga ttcaccgata cataatacag
     3781 gcactaagcc ggcatctttt aatactttga atttttgagc aataaattca tcgctttctt
     3841 tgtggtaagt acggcgttct gaatgcccga taataatata ttttgcccca aactctttta
     3901 acatttcagg tgaaatatca ccggtgaatg ccccttttac gttcacatca acgttttgtg
     3961 aaccaagtgc gattaagcct ttatcactgc aaccacagcc acaaccggca agtgatgctt
     4021 cagcgtgtgc caaatacatc accggtggag cgattgctac atcacagcct tcaacgccat
     4081 gtaattctgc ttttaaatct gcaattaagg ttttagtaaa cgctttatca ccgtttaatt
     4141 tccagttacc cattacaagt ggacgacgtg ccattttgtt tctcctatat gaagttgaac
     4201 ttaaatataa acgttgcaaa ctataccaaa ttttaatgtc gttttgttgt ttttattttg
     4261 ctttttctga tctagatcga aaggtttaac gtataatgcc gaaatcttat tttttatgtt
     4321 attcgagaag tgaatgaaac tgaattattt atactctcct cctcaagctg ttgggcgact
     4381 aaaagccgaa tatgcagact ttattgtgcg tgaagaactg ggctacgaac tagccggcga
     4441 aggggaattt gtggcggtta aaatccgcaa aaccaacgcc agcacgctgt ttgtggggga
     4501 aaagttagcc aaatttgtcg gtatttccga gcgtgaaatg agttatgcag gcttaaagga
     4561 ccgccacaac cgcaaaattc gtgttggttc gctcgccggc aatcattttg aattattgct
     4621 acgtgatgta gcagaaagcg aagagttgat ttaccgtttg caacagttgc aagcggtcgg
     4681 atttcccaat tattttaccg aacaacgttt cgggcgagac ggacataacc tgactcaagc
     4741 cttgcgttgg gcaaacgggg aaattagcgt gaaagatcgc aaaaaacgca gtttctacct
     4801 ttccgctgcc cgctcggaag tgtttaattt agtggtttca cagcggatta atgactgctt
     4861 aacccaaaaa atcttggaga atgattacgt tcaacttgcc ggctctaaca gctttttctg
     4921 cgtgaaatcg gacgaaattg ctgaaactca agcccgttta gcacagcaag atctacttct
     4981 caccgctccg ctgataggcg aaagatcgct tgaattagaa tgcaatcctg ctgaaaaagc
     5041 catcatagag caacacgctc aattggttgc cttaatgcaa aaagagcgta tggcagccgc
     5101 tcggcgagca atgctttgta agccacaaaa tctggaatgg caatttgaac aagaagggct
     5161 acggttaaaa ttctttttag attcaggcag ttatgccact gcactggtgc gagagttaat
     5221 tctgcttacc gaagagagcg aagcttagtc cataacacat aacaagcggt aagattttaa
     5281 tcattttttg caatttgcaa aactttaaca aaatcttacc gctttttgca cttttagact
     5341 aaaaaaactg tcgaaaaatt gttagaattg cgatctttgt atttagagtc tatcaagatg
     5401 taagatctaa aggaaattat gcgaatttta attagtaatg acgatggttt tcacgctgtc
     5461 ggcattcaaa ctttagccaa agccttgcga gatgcaggcc atatcgtcac cattattgca
     5521 ccggatcgta accgcagtgc agcttcaagc tgcctaacct tagtagatcc acttcgggtg
     5581 catcgttttg atgaatataa ttatgcggtg atcgccggca cacctgccga ttgcgtgcat
     5641 ttagccttaa acggcttgtt tgacggcaaa tttgcagaaa aatttgattt ggtggtctcc
     5701 ggcattaatc acggggcaaa tttaggcgat gatgtggttt actccggtac ggtagcggca
     5761 gcattggaag gccgccactt gccattacca agtattgcag tatcactggt tgggcgtaaa
     5821 cactcttcgt ttttagacgg tgaaaatcat tttggaacgg cagcacaggt agtgttagat
     5881 ttattggaaa aaatggaaac gcaacgtttt ccatcaaacc acgttctcaa tgttaatgtg
     5941 ccgaatttac cttattcaga gctaaaaggc acaatgatca cccgcttagg tgaacgttca
     6001 cccgctgcgg aaattgtgaa gcaaaaagat cctcgtaatg ctgatgtcta ttggattggt
     6061 gtaacaggtg aaccactgga tgaaagtttt ggtactgatt tttatgcatt aaaccgagat
     6121 tgcgtttcta tcacaccaat tcaagtggat atgaccgctc ataaaacgat agcaacctta
     6181 aaaggcattt ttaatgaaac tgtttgaaac aatttatgac aaaacaatgc agtggtctaa
     6241 gcaccgcttc gctgcctttt ggttgagttt tgtcagtttt atcgaggcga tctttttccc
     6301 gattccgccg gatgtgatgt tgattccgat gtcgatggca aaaccgcaaa atgcgtttaa
     6361 atatgcagtt tacactaccc ttgcttcggt tgccggtggt gttattggtt attttattgg
     6421 cttatatgct accgattggg tgcaaggcgt catcgcaaat tggggaatgc aagcaaactt
     6481 tgataaagca aaattgtggt ttgaaacttg gggtgtcgcg gtagtatttt tagccggttt
     6541 ttcgccgatt ccctataagg tatttaccat ctgtgccggt gtaatgcaga tggcgttctt
     6601 cccgtttgtg attactgctg cgatttctcg ctttgcccgt tttattttgg tagcaaaact
     6661 ctctgcttgg ggtggcaaaa aatatgaaca aaaaattcgc cgctcaattg aattaattgg
     6721 ttggggaaca atcgttttag ccgttgttgc ctatataatt tatacattaa tgaaataaat
     6781 tttaaggata taaaaatgaa aaaatcactt tttgttttat ctctgatttc ttttgcttta
     6841 gtgggttgtt caagcaattc gggtgaatcc acttctgcgg tagaaacaac agaagcaaat
     6901 gcaacttggc aatcagcaga tagcattcaa actgcaccaa tgcctgcctc gatgaatcaa
     6961 cctattgcca ctcagccaac ctatcagcag ccgacttact ctgcaccaca accaatttcg
     7021 gcagcaccag caccaatgcc tgtttcaagt ggtagtgata gctctcaagt tgaaacagta
     7081 gggaactgcc aagtggtgcg tgatgcgaat aatgctccta tctattcaca aattaccaaa
     7141 ggctgctaca cagaaagtca ctatacggta ggtaaaagtg atacgcttta tttaatcggt
     7201 tatctaaccg gcaccaatgc caatcaaatt gcgcagctaa atggtttaaa taccggctct
     7261 ccactgaaag tcgggcaagt cttacgtgtt cgttaatagg cagagaaaat gaacagaacc
     7321 cttttagcat ttgcaatttc ttgtgcattt ttgaccgctt gtagctcgcc tactcagcca
     7381 caagttgaag atccaaatat gttacctgca ggcacattac aaccgattga aggctcaggc
     7441 gcaagccaag acagttacag ttggccgtct gatattcaat caacgtcaat gcctgacagt
     7501 atgaaataat tttaggacaa tcatttaatg aaaaaacaat ttattcttct ccctttagtc
     7561 tctgctgttt tggcagcctg ttcttcaaac aatccagcac cggtggtgaa tgcttccggt
     7621 aataacgaat taagcccggg cgtgatgcag cctgttgatg tgagtgcagg tgcaattaat
     7681 tcaagcggtg gctggcagtc tgatattcaa tctgcaccaa tgccaagctc gatgaatacc
     7741 actccggtgc aaacaatgcc ccagccggtt tcagtgccac aacctgtggc gactgtaccg
     7801 cagccaatta ccaatccggt gattaccgaa caaccaccac agccgacaac cacgaccaaa
     7861 atcgtgaaaa aaacgaaaac ggtcgagaaa aaagtggatc aaaattttga gatcccgcgt
     7921 gatgccaaca atgccccaat gtacaaccaa attcaaaaag ggttctacga tggctctacc
     7981 tataccgtac gcaaaggcga cacaatgttt ttgattgcct atattgtggg taaagatgta
     8041 aaagaaatcg ccgctcttaa taatatgagc gaaccttacc aattaagcgt agggcaaaaa
     8101 ctcaaaaccg gcaaatctgc aacggaaact attaccgtgg aagaaaaagt caccgtaccg
     8161 gttgaaccac aaattaccta ccaacaaggt gcaaacggca caacctatgc ttctggcggt
     8221 aatattactg ggccggtaaa agcaggcaca gccaacgctg atgtcacgcc ggttaataac
     8281 ggtattaaag caacaactgc aactgctccg gcagtaactg cttctgtcgg tacagtaaat
     8341 gcaacagagg accgtaccgc ctccaccatt cgtgctatag atggcacagc aagtggtgcc
     8401 gtacaaagta gtaatactgt ttctgcacca gcttcatcaa ttaaatggca atggccaacc
     8461 agcgggcgtg taatttcagg cttctcctca gcagaaggag gtaataaagg cattgatatt
     8521 gccggcaata aaggacaaga tgtacgtgct gccgccgcag gtaaagtggt atatgccggt
     8581 aatgccttgc agggttacgg taacttaatc atcatcaaac ataccgatga tttcttaagt
     8641 gcttatgcac acaacaatac tattgaagtt gatgagcaag aaacggtgaa agccggtcag
     8701 aaaatcgcga ctttaggtag tacaggaacc aatacgaata aattacattt tgaaattcgt
     8761 tacaaaggaa aatctgtcga tccggctcgt tatttaccaa gaaaataaga gtaacttttt
     8821 agcataatcc gaccgcttgt gtactacaag cggtcaattt ttaggaaaat tatgcaaatg
     8881 aaaaaatata tcgcacacat gataagttcg ttactgctga tagcttgttc ggactaccga
     8941 gcaacaccaa ctagcccaag cgatgcttac acttgctctc cttcttttcg ctactctttc
     9001 ttaaaaaaaa cgtgcatacc tttattcagt atagccgaca ttcaattatt ggatccaacc
     9061 gagccttcac atcgcattta tattttgtta tctgaagatc gatttcaagc cgaagtcttc
     9121 tcaacgaagc tctctgaatc ttctatgtta ttggaggcgg ttaaaggagg ctatatttca
     9181 aaagacggaa aagttcgttt actcaaaaaa gctgaaggtt ggaaaattta ctatgagtga
     9241 gactaaaata cgttgtgatt ggtgtaaaag cagtgaaatt tatatgaaat atcacgacga
     9301 agaatgggga aaaccggagt ttgacagcct caaactgttt gagaaaatct gccttgaagg
     9361 gcaacaagcc ggactttctt ggattacggt gttgaaaaaa cgggaagcct accgccaagc
     9421 attccatcag tttaatcctg aaaaaattgc caaaatgggt gaagaagaaa ttgatttgtt
     9481 aatgcaaaac actagcttaa tccaccaccg agcaaagtta gaagccatta taaaaaatgc
     9541 gaaagcttat atcacaatgc agcaaaatgg cgaagacttc agtcggttta tttggtcttt
     9601 tgtgaattat cagccgcaaa ttaatgatgt accaacactt gaagctgttc ctgctcatac
     9661 agaaacctca aaagcaatgt caaaagcgtt gaaaaaacgt gggtttgtgt ttgtaggcga
     9721 gactacttgc tatgctttta tgcagtcaat ggggctggtt aatgaccatt tgaataattg
     9781 cgtgttcaaa cataaataaa cacaaaaaat taggcgacca tttggtcgcc taacattaat
     9841 tcagattatt gattgttttg aacgtaatca attgctgatt gaactgtagt aattttttca
     9901 gcttcttcat ctggaatttc gatatcgaat tcttcttcta aagccattac taattcaaca
     9961 gtgtctaaag aatctgcacc taaatcttca atgaatgaag cttctggttt tacatcttct
    10021 gctttcgcgc caagttgatc aacaatgatt ttttttacgc gttcttcaat gctcattttg
    10081 tttttcctat agtgaatatc gcataagtgc gagagttaaa tagtgtaatc gaaataagtt
    10141 taaatacaac cttttataaa aaggtcaaac cagactattc ctatacacca gaatatatct
    10201 gtttttccat tctatcatta tgtttgtgtt taatctatag agataaatca aatttcattt
    10261 gattacccta ctttccgtaa ttcatctcgc atttgtgcaa tcactgcttg ataatctggc
    10321 tggtcaaaaa tcgcagaacc tgccacaaac atatctgctc ctgcggctgc aatgtcggca
    10381 atgttattta ttttcacacc accatcaacc tctaagcgaa tgttataacc gctctcatca
    10441 atacgacgac ggacttcttt caatttatct aaggtggacg gaataaatga ttgtccgcca
    10501 aagcccggat tcacagacat caataaaacc acgtcaactt tatccatcac ataatctaaa
    10561 tagctcaatg gcgttgccgg gttaaacacc aagcctgatt tacaacctaa atcacggata
    10621 agctgtaaat ttcgatctat atgttccgtt gcttcagggt ggaatgtaat ataatccgct
    10681 ccggctttgg caaaatccgg aatcaaacgc tcaaccggtt ttaccattaa atgcacatca
    10741 atcgggcatt gaatgccgta atcacgtaag gctttgcaga tcgccggccc gaaggtcaaa
    10801 ttcggcacgt agtggttgtc cattacatca aagtgaatta agtctgcacc ggcttttaac
    10861 acctctgcca catcatcacc caagcgagct aaatcggcag ataaaataga cggtgcaatt
    10921 aaataaggat tcttactcat atttcctcac tatcaaaaaa taaatctacg ttagattacc
    10981 ataattttaa cagcgaaaag agtctctctt cctaaaaatc cgttttttta caaaacacca
    11041 taaaaaagtt atggaat
//
LOCUS       DANLRW010000084        10847 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.084, whole genome shotgun sequence.
ACCESSION   DANLRW010000084 DANLRW010000000
VERSION     DANLRW010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10847
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.084"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..411)
                     /locus_tag="PXA71_001869"
     CDS             complement(<1..411)
                     /locus_tag="PXA71_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5105956.1"
                     /translation="MSRKYKFHEKSGAYFVSFATVYWVGVFVREIYFQVIVDALDYCR
                     KHKGMILYAYCIMPTHIHLLFQAENQNPSDLIRDFKTFTAKILIQRIKDNLQENRREW
                     LLWMFSRAAERRCNVKQYQFWQHHNQPIEIYSQKF"
     gene            complement(1015..1854)
                     /locus_tag="PXA71_001870"
     CDS             complement(1015..1854)
                     /locus_tag="PXA71_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5105957.1"
                     /translation="MGEFNCPDVNFPHTATGKHKRINYSATLSAYIHDLFTPFISYSQ
                     THRAPNIKEIFFSNLGDYGVNTALQPEQAKTTQFGINGFKERVFSEEDKLGFKVLFYN
                     THLKNYIYNVQHTAVGSAPSLFIFHKNYEKPVNIKGIELEFSYDIGSFYGNLAYARQN
                     TNQPVSFTDASSRVDAASHYGFKTQGFGASKISALPRDYGSLELGTRWFDQRLQIGGV
                     AKYYGKSKRIAIDEFNYTYYPGTHIVKETHRLEETVNKQPIIVDFYVSYEPIKSLILK
                     LEL"
     gene            complement(2521..2898)
                     /locus_tag="PXA71_001871"
     CDS             complement(2521..2898)
                     /locus_tag="PXA71_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HDL5105958.1"
                     /translation="MDKSQGVVSVNIRGGSGFGRANNAVGPNYMGMLAGKYQFNDSTW
                     IGALFGHSWRKISQNYKIGGGRKVTDSSIDLSKIDDLDKESSTTSPFNAAHLKQKPMS
                     RMAKLEYGDKYQTITLLPKSGSG"
     gene            complement(3347..3529)
                     /locus_tag="PXA71_001872"
                     /pseudo
     CDS             complement(3347..3529)
                     /locus_tag="PXA71_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248253.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1595 family transposase"
     gene            complement(3884..7780)
                     /gene="purL"
                     /locus_tag="PXA71_001873"
                     /gene_synonym="purI"
     CDS             complement(3884..7780)
                     /gene="purL"
                     /locus_tag="PXA71_001873"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HDL5105959.1"
                     /translation="MTIQTFRGSPALSAFRIQQLLQKFQQNQLPVKSVYAEFLHFVAL
                     NRPLVADEENKIKELLHYGPTLEEDEPTGFCLIVTPRIGTISSWSSKATDIAHNCGLA
                     AVERIERGTAYYLEFSETPNESQLTTLKGLLHDRMMETVLDNESQAEQLFAQQEPKPF
                     TSVDILGGGRKALEEANINLGLALADDEIDYLVENFTQLGRNPNDIELYMFAQANSEH
                     CRHKIFNADWTIDGVKQEKSLFKMIKNTFEKTPDYVLSAYKDNAAVMEGSTVGRFFPD
                     QDGQYRYHQEDAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGAKPKAGLT
                     GFSVSNLVIPKFEQPWENPLSKPNRIASALDIMIDGPLGGAAFNNEFGRPALLGYFRT
                     YEEKVNSFAGEEIRGYHKPIMLAGGIGNIRAEHVQKGEIPVGAKLIVLGGPAMNIGLG
                     GGAASSMASGKSKEDLDFASVQRENPEMERRCQEVIDRCWQMGAENPILFIHDVGAGG
                     LSNAMPELVHDGECGGKFDLRNILCDEKGMSPLEIWCNESQERYVLAVSPEKLDIFTA
                     LCERERAPFAVIGEATKEKHLTLADPHFDNKPIDLPMNVLLGKTPKMQRDVLSKTVKN
                     PPLATADIDLKEAFHRVLRLPAVAEKTFLITIGDRSVTGMVAQDQMVGPWQIPVADCA
                     VTTASLDSYHGEAMSIGERSPVALLDFAASARLAVAESITNIAATNIGDIKRIKLSAN
                     WMSAAGHEGEDAGLYEAVKAVGEELCPELGITIPVGKDSMSMKTTWEENGEQKSVTAP
                     LSLVISAFARVEDVRKTVTPQLRTDKGDTRLLLIDLGEGNNRLGATALAQVYKQLGDK
                     PADVVNVARLKGFFNAMQTLVAQGKLLAYHDRSDGGLITTLAEMAFAGNCGISVEIDR
                     LVDDLAVLFNEELGAVIQVRTEELSEVQAVLNAENLANLTFDIGTAVESDSFEITRNG
                     TTVFSQKRSELRGIWAELTHQMQRLRDNPECADQEFAAKKDPNNKGLSAFLTYDVNED
                     IAAPYINKGVKPSVAILREQGVNSHYEMAAVFDRAGFNAIDVHMSDLISGRRNLNDFN
                     AMVACGGFSYGDVLGAGGGWAKSILFNPMLRDQFSKFFANPNTLALGVCNGCQMVSNL
                     AEIIPGTENWPRFVRNKSERFEARAAMVKINDTNSLWFNGMAGSHMPIAVSHGEGQVE
                     FKNPQQLANLQQQNLVIAQYVDSHLNPTEQYPANPNGSALGITAIGNTDGRVAIMMPH
                     PERVFRAVSNSWCPEDWTEGGAWMRLFRNARVALKY"
     gene            8042..8221
                     /locus_tag="PXA71_001874"
     CDS             8042..8221
                     /locus_tag="PXA71_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105960.1"
                     /translation="MFKEKGYDEFLAEKIRLGLEDMQSGNGLSLDESKARTKQLIERK
                     ARELANFEQENIIYG"
     gene            8214..8501
                     /locus_tag="PXA71_001875"
     CDS             8214..8501
                     /locus_tag="PXA71_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5105961.1"
                     /translation="MAKTLRISSRAQNDIEEILASVIEYTGFESSGIRLQEDIYQKFE
                     TIAYMPSAAGRLREDGTREAFTRRYRIVYTELENEVWIITIIHSSRLYPRI"
     gene            complement(8627..10729)
                     /locus_tag="PXA71_001876"
     CDS             complement(8627..10729)
                     /locus_tag="PXA71_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent siderophore receptor"
                     /protein_id="HDL5105962.1"
                     /translation="MKSFKLLPVSAAVLSVLAANAVAQTASTDAVVLDTVTVTDNQGL
                     KVQSNVVTTKKKDESTQTDLRGLLKDEPAISLGGGNGTSQYLYIRGMGQNSIDVKVDN
                     TYSDSQILYHQGRHMLDPALVKIVSVQKGAGSASAGIGQTNGAVIAKTVDALDLLKNS
                     DKNFGAKLGTGFSTNHAHNFNATLYGKGEIFDALVSGNLVRDRDYKGGKDYVNQFGTN
                     RVPYSALDKTSFLAKLGATLGDHRFVLSHSSERNEGQRLVREEFDVAPNGTKVSPYNR
                     LTVERQAPANRRITVQRTNLEWTGKNLGFAQEATANVYQLVQGRWSENETGNGYAGGV
                     DYATKTKIVTHGANVNFDSALHENVLLKYGVNYRHQEAKPHTKFNPLVKNQEKTDTGV
                     YVEAITAPVDKVTLTTGVRYDHFKFKAMDGKERSNGAFSPSVGLIYEPIEHLSLSASH
                     NYATRSPRLYDALTAHGNRKIVSIGSNTKAEKARNTEIGFNYNNGTFSFDGSYFWQDI
                     KDALGGGRDSHNPNNELIMNLGKIKNRGYELNAGYHNGGFTARIGVAHSKPRFYSPTI
                     WEVNRQTGKREEKPLLSTNPEYASAIGRTWTASLSYRFEQPNLEVGVHHRIVEKVKPE
                     DNFFVTGGTLQTNTGTGKDGYNVTDITLNWKPLKDDSVNVNFAVDNVANKKYNAHGQR
                     GQLSARGREFRAGVNYTF"
BASE COUNT         3055 a         2304 c         2121 g         3367 t
ORIGIN      
        1 gaatttctgc gaatagattt caataggttg gttatgatgt tgccagaatt gatattgttt
       61 tacattacaa cgtcgttcag ccgcccgaga aaacatccac agcaaccatt cccgacggtt
      121 ttcttgcaaa ttatctttaa ttctctgaat aagtatttta gcggtgaatg ttttgaaatc
      181 tcgtattaaa tcagaaggat tttgattttc tgcttgaaat aataaatgga tatgagttgg
      241 cataatacaa taggcataca aaatcattcc cttatgtttt ctgcagtaat ctaaggcatc
      301 aacaattacc tgaaaataaa tctctctcac aaacacacca acccaataaa cagttgcaaa
      361 actgacaaaa taagcaccgc tcttttcgtg gaatttatat tttcggctca tagcctttct
      421 caacttaaaa aggaataaga aaaataccct attcaaaatt aaattccaca agccaatata
      481 actttttcga tctagatcgc aaaaatcatt aaaacttgca aagtgttgat aaaatttaac
      541 cgcttgtgat aagccaaaga aatactgaaa tgatagcaat ggatggataa ataaaatgat
      601 gacgcaagcg tccacgcttg tgccaaaaac aaaagcccaa ataaaccaaa ttttacttgg
      661 ctgatttagg cttttatctt atgactgaaa tactttcaga acaggaatta actggcacaa
      721 gcgtggacgc ttgcaccatc tgggttaaat ccttatatta taaggtttta acctactgtg
      781 cagactcaat tttagtcact atgccaaata attagttaaa ggaaatttaa gctagcttat
      841 ctaggacaac cccatttaga atttataact tgtgctaaac actatagttc tccctcttgc
      901 ataattattg agcgtataaa taggttcatc actgatatca gaattgtaaa ccctctgact
      961 tgctgcatca ttattagcat caagaggatc aatgtacttt ttgtcaaaga cattttatag
     1021 ttctaacttt aatataagcg acttgattgg ttcgtagctc acgtaaaaat caacaataat
     1081 aggttgttta tttacggttt cttcaagccg atgagtttct ttcacaatat gtgttccagg
     1141 ataataagta tagttaaact catctatcgc aatacgttta ctttttccgt aatattttgc
     1201 cactccgcca atttgtagtc tttgatcaaa ccatcttgtc cctaactcca atgagccata
     1261 gtctcttggt aacgctgaaa ttttgctggc accaaaacct tgagttttaa aaccataatg
     1321 agaagcggca tctacccttg aacttgcatc tgtaaaggat acgggttgat tcgtattttg
     1381 acgagcataa gctaagttgc catagaaaga gcctatatca taactaaatt ctaattctat
     1441 ccctttgata tttactggtt tttcatagtt tttgtggaaa atgaataaac taggagcact
     1501 accaacagcg gtatgttgta cattataaat atagtttttt aagtgagtgt tataaaatag
     1561 cactttaaat cctaatttat cttcttcact aaatacccgt tctttgaatc cattaatacc
     1621 aaactgtgtt gttttcgctt gctctggttg tagtgcggta tttacaccat agtcacctaa
     1681 attagagaag aatatttctt taatattagg ggctcgatgt gtttgagaat aactaataaa
     1741 gggcgtgaat aaatcgtgaa tataagcaga caaggttgct gaataattaa ttcgtttatg
     1801 ttttcctgtt gctgtatgag gaaaattgac atcaggacag ttaaactctc ccaattcagg
     1861 atcattagga aaatcctcat ctggaatata tgtacaatgt ttttttgcaa gttgtctaat
     1921 tgagattgta atgaccttaa atgctcaaac tgcctatttc tacttgcctg tctaatatct
     1981 gactccaatt ctctaatcgc aaaaggaaaa tatttaaaac gctgaccaat aaaccgagcg
     2041 gtattaatat ttgcgtttat atccaatccc catataccat agttaaagtg attgtcgaga
     2101 taaaaagtat cgaacttctg ttcgccatca ggctggaaag ttgaagtata aagcgattta
     2161 cgaacggctg tcattcctac agaatcgttg ttttcgctgg tttcgccatt ctctaagtta
     2221 tagtttaatt ccgcaggatg tctattttta ctatagcggt tctttaaacg attaaaacct
     2281 aatattgctt cccattctcc atctttaaac ggagacactt taaaggtgtt actcaaattt
     2341 aaggttgtcg ctttgttgtt aattgccaaa ccttgaatta aatatttatt attaattcag
     2401 ctccctttgt tgtagttttg tttgccttga ttttccgcat aggccacttg aacatctaac
     2461 caaggtgact cgggcaagtg aaaacgataa tttaactggt tgttttggtt ttttaaatgt
     2521 ctacccgcta cctgactttg gtaatagtgt gatggtttgg tatttatcgc catattccaa
     2581 tttagccata cgactcattg gtttttgttt taaatgagct gcattgaacg gtgaggtggt
     2641 agaactttct ttatctagat catcaatttt actaaggtca atcgagctat ccgtaacttt
     2701 tcgtccgcct cctattttat aattttgaga gattttgcgc caactatgcc caaataatgc
     2761 tcctatccaa gtagagtcat tgaattggta tttgccagcg agcattccca tataatttgg
     2821 gcctactgca ttattagctc gcccaaatcc agaacctcct cgaatattaa cagaaaccac
     2881 accttgagat ttatccattt gtgtaaatgc gccaggcata gaacgaacaa tagtctctaa
     2941 gctttggttt gattccaaga ttttatctcg ggtgcttatt gcccctgttt taatgaaaac
     3001 ttcatctgtt tttttattgc ttgggcttta acctcaaccg tatctaacat ataaccttcc
     3061 tctgcgaata ccctaggtaa ggggcagata agtgttgtat aagtcaggtg aaatacatat
     3121 tttttgatct tcatttctat tgtctttcct ataaaaaatg taattaaatt taaatcgcaa
     3181 cgctaaagac actgaagaaa gaagtgtgcc tttattgcac gagtctagta tagcacaaga
     3241 cgaaaatatt aatcatgttc aatattataa taaaaggata cgttagacga ttagcataaa
     3301 tagaaatatg cacttaaata gaggattata aaaataaggg gctatcctag aaactcaatt
     3361 taaccaattg ttttaaaaag aaaacttgat attttaagtt actgtgatta aaacgccatc
     3421 tgcattcttt caaatagaat tcatgtactt taggaacgcc gttaaattta cgcaaatagc
     3481 attttgcctg actctccaaa ttctcaattc cgttaatgtg attttgattg ctaactaaaa
     3541 accactttct attaaggtag aattgaccgt tcaaataaat cacgttcatt ttctgtataa
     3601 gacgtaatgg ggcatttaaa agggtgaaca gggtccaata agatttttca ataagtttcc
     3661 ctatttacgt aagcataaat tgtggggcaa cccacttttg tggcaagagg ctactgcgta
     3721 gacaccgtag atgtcaatgc agaaatgata agaaagtact tgaaatatca ggaaaagcac
     3781 gaaggataaa caacttcgtt tatcagatat ataaaaattc gggttctatg aattcgaatt
     3841 ttaatcgccc cctatggggg cagatcacta cgaaggtaga tttttaatac ttcaacgcca
     3901 ctctcgcatt tctaaacaac cgcatccacg ctccaccttc cgtccaatct tctgggcacc
     3961 aagagttact gaccgcacgg aacacacgtt cagggtgtgg catcataata gcgactcgtc
     4021 cgtctgtatt accgatagcg gtgataccca acgccgatcc gttcgggttg gctgggtatt
     4081 gttcggttgg gttgaggtgg ctatccacat attgtgcgat cacgagattt tgctgttgca
     4141 agttcgctaa ttgctgtgga tttttgaact caacttgtcc ttcaccgtgt gaaaccgcaa
     4201 tcggcatatg gctgcctgcc attccgttga accaaagtga gttggtgtcg ttgattttca
     4261 ccattgcagc acgggcttca aaacgttcgg atttattacg cacgaagcgt ggccagtttt
     4321 ctgtgcctgg aataatttcc gctagattgg agaccatttg gcaaccatta cataccccta
     4381 atgccagcgt gttcgggttg gcgaagaatt tgctgaattg gtcacgcagc attgggttga
     4441 acagaatcga tttcgcccag ccgccgcctg cacctaagac atcgccgtaa gagaagcctc
     4501 cgcacgccac cattgcgttg aagtcgttga ggttgcgtct gcctgaaatc aagtctgaca
     4561 tatgcacgtc aatggcgttg aaaccggcac ggtcaaagac ggctgccatt tcgtagtggc
     4621 tgtttacacc ttgctcacgc aaaatcgcca cactcggttt tacgcctttg ttgatgtatg
     4681 gggcggcgat gtcttcgttc acatcgtaag ttaaaaatgc ggataagcct ttgttattcg
     4741 ggtctttttt cgctgcaaat tcttggtctg cacattcagg gttgtctcgc aaacgctgca
     4801 tttgatgagt gagttccgcc caaatgccac gcagttcgga acgtttttgg ctaaatactg
     4861 ttgtgccgtt gcgggtaatt tcaaagctgt cgctttcaac cgctgtacca atatcaaagg
     4921 tgagatttgc aagattttcg gcatttaaca ccgcttgcac ctcgctcaat tcttcggtgc
     4981 gaacttggat tactgccccc agttcttcgt tgaataacac ggctaaatcg tccaccaagc
     5041 ggtcgatttc caccgaaatt ccgcaattcc ctgcaaacgc catttccgcc agtgtggtga
     5101 ttaaaccacc gtccgagcgg tcgtggtagg caagcaattt tccttgtgcg acaagggttt
     5161 gcattgcgtt gaagaagcct tttaagcgag ccacattcac cacatcggca ggtttgtcgc
     5221 caagttgttt gtaaacttga gcaagtgcgg ttgcacccaa gcggttgttg ccttcgccca
     5281 ggtcgatcag caacaagcgg gtatcgcctt tgtcggtgcg aagttgtggg gtaacggttt
     5341 tacgcacatc ttccacacga gcgaaagcgg aaatcacgag cgaaagcgga gcagtaacag
     5401 atttctgttc gccgttttcc tcccaagtgg ttttcatcga cattgagtct ttgcctaccg
     5461 gaatggttat gcctaattca gggcaaagct cttcgcccac cgcttttact gcctcgtaaa
     5521 gccctgcgtc ttcgccctcg tgccctgccg ccgacatcca attcgccgag agtttaatgc
     5581 gtttgatgtc gccaatgtta gtggcggcaa tattggtgat gctttctgcc acggcgaggc
     5641 gagctgaggc agcaaagtca agcaaagcaa caggtgatcg ctcgccaatt gacattgctt
     5701 caccgtgata gctgtctaat gaagcggtgg ttacggcaca atctgccaca ggaatttgcc
     5761 acgggccgac catctgatct tgtgccacca ttcccgttac tgagcgatcg ccgatggtaa
     5821 tcaggaaggt tttttcagcc accgcaggca agcgtagcac acggtggaac gcctctttca
     5881 agtcgatgtc agcggttgca agcggtggat ttttcacagt ttttgacaaa acatctcgct
     5941 gcatttttgg cgttttgccg agcaacacat tcatcggcaa atcaatcggt ttattgtcaa
     6001 aatgagggtc agcaagggtt aaatgcttct ctttcgttgc ctcgccaatc accgcaaatg
     6061 gggctctttc cctttcgcac aatgctgtga aaatgtcgag tttttcaggg gaaacggcaa
     6121 gcacataacg ctcttgcgat tcgttacacc aaatttcaag tggcgacatt cctttttcat
     6181 cgcacaagat gttacgcaaa tcaaacttac cgccacattc gccgtcgtga accaattcag
     6241 gcatcgcatt tgataaaccg ccagccccca cgtcgtgaat aaataaaatt gggttctccg
     6301 cccccatctg ccagcaacgg tcgatcacct cttggcaacg gcgttccatt tcagggtttt
     6361 cccgctgaac cgaggcaaaa tccaaatctt ctttcgattt ccccgatgcc attgacgatg
     6421 ccgccccacc gcctaagccg atgttcattg ccgggccacc aagcacgatc aacttcgctc
     6481 ccaccgggat ttcgcctttt tgaacgtgtt cggcacgaat gttgccgata ccgcctgcta
     6541 acataatcgg cttgtgatag ccacgaattt cttcgcctgc gaagctgttc actttttctt
     6601 cgtaagtacg gaagtagccc aataacgcag gacgaccaaa ttcattgtta aatgccgctc
     6661 cgcctagtgg gccatcaatc ataatatcca gtgcggaggc aatgcgattc ggcttggaaa
     6721 gcgggttttc ccacggctgt tcaaattttg ggatcactaa gttagagacc gaaaaacccg
     6781 tcaagcccgc tttcggtttc gccccacgcc ctgtcgcccc ttcatcacga atttcaccgc
     6841 ccgaaccggt cgccgctccc gggaatggcg agatggcggt tgggtggttg tgagtttcta
     6901 ctttcattaa aatatgagca tcttcttgat gatagcgata ttgtccatct tggtcgggga
     6961 agaaacgccc aaccgttgag ccctccatca ccgccgcatt gtctttgtag gcggaaagca
     7021 catagtccgg ggttttctca aaggtgtttt taatcatctt aaacagggat ttttcctgtt
     7081 ttaccccatc aatcgtccaa tccgcattaa aaattttgtg gcggcaatgc tccgagttgg
     7141 cttgggcgaa catatagagt tcaatatcat tggggttacg cccaagttgg gtaaagtttt
     7201 ccaccaagta atcaatttca tcgtccgcca acgctaaacc taagttgata ttcgcttctt
     7261 ccagtgcctt gcgaccaccg cctaaaatat ccaccgaagt aaacggcttc ggctcttgct
     7321 gagcgaaaag ctgttcggct tggctttcgt tatccagcac cgtttccatc atacggtcgt
     7381 gtaataagcc tttcaacgtc gtaagttgac tttcgttcgg cgtttcagaa aattctaaat
     7441 aatatgccgt gccacgctca attcgctcta ctgctgccaa accgcagtta tgggcgatgt
     7501 cggttgcctt agacgaccac gaggaaatcg tgccgatacg aggggtaaca atcaggcaaa
     7561 accctgtcgg ctcgtcttct tccagcgttg gaccgtagtg caataactct ttgattttgt
     7621 tttcttcatc ggctacaagc ggtcgattta atgccacaaa atgcaaaaac tccgcataaa
     7681 ctgattttac aggtaattga ttttgttgga atttttgcag aagttgttga atgcgaaaag
     7741 cagataaggc aggcgagcca cggaaggttt ggattgtcat tctttggatt ttcctattta
     7801 agatgaaaaa ctaaaccgat tataaacgat tgcgcaaacg attgctatat ttgtcagacg
     7861 tttgctgtta gatacattta ttcattagta tcaaataaat ttgttcaata ctaatgaata
     7921 cctttcaaag aaggtcccct ctatcaatct gttttaaaag ataatttaaa aataagttaa
     7981 tttgacaact caaaattaaa agcagacaat gcttttaatt atatcttaat aggagcagat
     8041 tatgtttaaa gagaaaggct atgatgaatt cctagcagaa aaaattcgcc ttggcttaga
     8101 agatatgcaa tcaggtaatg gtctttcact cgatgaatca aaagcacgaa ccaaacaact
     8161 gattgaacgt aaagcaagag aactcgcaaa ctttgaacaa gagaatatca tttatggcta
     8221 aaacattacg aattagcagt agagctcaaa atgatattga agaaatttta gcgagcgtaa
     8281 ttgaatatac tggttttgaa agtagtggaa ttcgcttaca agaagatatt taccaaaaat
     8341 ttgagactat cgcttatatg ccctctgcgg ctggacgttt aagagaagat ggcacaagag
     8401 aagcattcac taggcgttat cgtattgttt ataccgaatt agaaaatgaa gtgtggatta
     8461 ttaccattat tcatagtagc agactttatc cacgcattta aataacaaac gactaaaata
     8521 gtcggttttt tatttgcaaa aaattaataa aatatcaccg cttgtaagct ccataaaaaa
     8581 aagcccgatt gtaacatcgg gcgttttagt ctgaatttaa gtcagattag aatgtgtagt
     8641 tcacacctgc acggaattca cgtccacgag ctgataattg accacgctga ccgtgtgcgt
     8701 tgtatttttt attcgccacg ttatccactg cgaagtttac attcacgcta tcatctttaa
     8761 gtggtttcca gtttaaggtg atatcagtta cattgtagcc gtctttgcct gtaccggtat
     8821 ttgtttgtaa tgttccgccc gtaacgaaga aattatcttc aggtttcact ttctcaacaa
     8881 tacggtggtg tacgccaacc tctaaatttg gttgttcaaa gcgatagctt aaagaagctg
     8941 tccaagtacg accgatagct gaggcgtatt ctgggttagt acttaataat ggtttttctt
     9001 cccgcttacc agtttgtctg tttacttccc aaatagttgg tgagtagaaa cgcggtttgc
     9061 tgtgtgcaac accaatacga gcagtaaaac caccattatg gtaacctgca tttaactcat
     9121 aaccacggtt tttaatttta cctaggttca taattaactc attattagga ttatggctat
     9181 cacgaccacc acctaatgca tcttttatat cttgccagaa atagctacca tcaaaactga
     9241 atgtaccatt gttatagttg aaaccgattt cagtattacg agctttctcc gctttagtat
     9301 tgctaccaat actaacgatt tttctatttc cgtgagccgt tagtgcatcg tataaacgag
     9361 ggctacgagt tgcatagttg tggcttgcac ttaagcttaa atgttcaatt ggctcataga
     9421 taagcccaac gcttgggctg aatgcaccat tactacgctc tttaccatcc attgctttga
     9481 atttgaagtg gtcgtaacgt acaccggtag ttaaagttac tttatctact ggagcagtaa
     9541 ttgcttcaac atacacgccg gtatcggttt tctcttggtt tttcacaaga gggttaaatt
     9601 tagtgtgtgg tttagcttct tggtggcgat agttcacacc gtattttaat aatacatttt
     9661 cgtgaagggc agaatcaaag tttacgtttg caccgtgggt tactatttta gttttggttg
     9721 cataatctac accaccagca taaccattac ctgtttcatt ctcagaccaa cgaccttgta
     9781 ctaactgata cacgttagct gttgcttctt gagcaaaacc taagttttta ccagtccatt
     9841 ctaagttagt tctttgaacc gtaattctac ggttagctgg agcttggcgt tctacagtta
     9901 agcggttgta cggagaaacc tttgtgccgt taggtgctac atcaaattct tcacgcacta
     9961 aacgctgacc ttcatttcgc tcacttgaat ggcttaatac aaaacggtga tctcccaatg
    10021 ttgcacctaa tttagctaaa aagctggttt tatctagtgc actatacgga acacggtttg
    10081 tgccgaattg gtttacgtaa tctttaccgc ctttatagtc gcgatctctc acaagattac
    10141 ctgagactaa agcatcaaag atttcgcctt taccatataa ggttgcattg aaattgtgag
    10201 cgtggtttgt gctgaagcca gtacctaatt ttgcaccgaa gtttttatcg ctgtttttta
    10261 ataaatctaa tgcatcaacg gttttagcaa ttactgcacc attagtttga ccaataccgg
    10321 ctgaagcact gcctgcacct ttttgtacag aaacaatttt caccaatgcc ggatctaaca
    10381 tatgacgacc ttggtgatac aaaatttggc tatctgagta agtgttatct acttttacat
    10441 caattgagtt ttgacccata ccacgaatat agagatattg tgatgtaccg ttaccaccac
    10501 ctaagctaat tgccggctca tcttttaata aaccacgcaa atcggtttgg gtgctttcat
    10561 cttttttctt agttgttacc acattgcttt gtacttttaa accttgatta tctgttacgg
    10621 taacagtatc taatactact gcatctgttg aagcagtttg agccactgca ttagcagcaa
    10681 gtacgctcaa taccgcagca gaaacaggga gcaatttgaa gcttttcatt ttatttatat
    10741 tccttaggta aattatttaa gaggattatc tgtttgatat taaaaataat tctcaacacc
    10801 aaacgttcgc aaattttaca gagataaaaa tgattgtcaa ttagtct
//
LOCUS       DANLRW010000085        10610 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.085, whole genome shotgun sequence.
ACCESSION   DANLRW010000085 DANLRW010000000
VERSION     DANLRW010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10610
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.085"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            111..323
                     /locus_tag="PXA71_001877"
     CDS             111..323
                     /locus_tag="PXA71_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105963.1"
                     /translation="MIGYEDYTDASLQPEEDPSEEAFILAEENIIELLENNGFETIAT
                     ILAGSDGWRNAINAYLAEQNKHRNEF"
     gene            336..1286
                     /locus_tag="PXA71_001878"
     CDS             336..1286
                     /locus_tag="PXA71_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105964.1"
                     /translation="MTTANQQFELILKTESRVVSTNLQTFEEQANQYLATLTTTFETD
                     DDFAKAKEEVKELESIEKKIRDAIKQTQTGEIAELVLTAEQIAERFRQERLTRDKLVK
                     SKETEIKKQIADKAIEEITDTRNKLVKVSDISLALEITMPKHGIANRIAEAQKNKRTI
                     DSLTKAVNAEKALIISEMSVEIGRLTERLEQLAAKSAYLFPDAVKLIATQDDLAPIIQ
                     QRLAEEAEREAAIKAKAEADKVQAEAKAITDKMERKQAVENPQNVAKMNIEEPAQTDG
                     PLGDFIITIRLNQTIQTNAVSIARELKAKFGDSVSLNKAK"
     gene            1327..2121
                     /gene="bet"
                     /locus_tag="PXA71_001879"
     CDS             1327..2121
                     /gene="bet"
                     /locus_tag="PXA71_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HDL5105965.1"
                     /translation="MTTALQTLTNKLAERFEMGDGSGLVETLKSSAFAGATVSDAQMI
                     ALLVIANQYQLNPWTKEIYAFPGGNGGLTPIVGVDGWVRIINREPQYDGMEFHFTDDY
                     SACTCTIYRKDRSKPIVVTEFMGECKKSSPAWNSHPKRMLRHKAMIQCARLAFGFTGI
                     YDQDEAERIAENEKPPKNITPQNNVVETTAVELISEEQLSQIRQLMQVTGTEEAKILA
                     YIGVQALNQIPKSQAEAVIKKLNLTLDKQNAEKADNGESVGEEIPL"
     gene            2118..2753
                     /locus_tag="PXA71_001880"
     CDS             2118..2753
                     /locus_tag="PXA71_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HDL5105966.1"
                     /translation="MTGDLIILDCEQGSEEWLNARLGIPTATGIENIVTPSGKKSSAW
                     NSYLAELVAESIEGAKDGFKSSDMARGNELEPLARMAYEFETDTEVVQVGGVYLNAEK
                     QLMVSPDGLIPNLKKGLEIKCPKMKTHIKYLLEGGVPNEYLIQVQSALWVTGYETWDF
                     VSYCPEYQKQPLYIYTAERDPVLMKAFDQYIPQFIKSLYALKGVTAPKGAF"
     gene            2766..2942
                     /locus_tag="PXA71_001881"
     CDS             2766..2942
                     /locus_tag="PXA71_001881"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105967.1"
                     /translation="MTTQKKYELLQNDTINHNGRTLYRIKAICHFRRTAEYSARATHA
                     TAAECYGGIACTST"
     gene            2963..3415
                     /locus_tag="PXA71_001882"
     CDS             2963..3415
                     /locus_tag="PXA71_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDL5105968.1"
                     /translation="MKPFDLNKALAGEPVKLRNNDKAFVKYLISDDYIRDNKDHQVQG
                     YTVDEENVFLSEVSWAVSGSHFNDGTIAQYDIVGMWEEPRPAVTLTLPCPLKEPQENM
                     WFIDNDFTIVKSMFANAPFVKKFLPQGRCFASEEDAQEWLDAMRNSRR"
     gene            3493..4020
                     /locus_tag="PXA71_001883"
     CDS             3493..4020
                     /locus_tag="PXA71_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5105969.1"
                     /translation="MNEEKYFSVDVSDETHVIRLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERASELFGEAEQVIEPPTLLE
                     NNGWISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIA
                     VTHWQPLPEPPKEEK"
     gene            4017..4220
                     /locus_tag="PXA71_001884"
     CDS             4017..4220
                     /locus_tag="PXA71_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105970.1"
                     /translation="MTDTERLDFIAQRKLDVRYSDLVDEFIIASYTKPHEQYFHWARN
                     ADLRTAIDEAMKEMRGLNNATTN"
     gene            4204..4668
                     /locus_tag="PXA71_001885"
     CDS             4204..4668
                     /locus_tag="PXA71_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5105971.1"
                     /translation="MQQLIKNIEQWAEDRNLINGSTPQKQMLKLMEEFGELCGGIARN
                     NPEMIKDAIGDLIVVCIIKAKQEKQPIYPVQFENHRLNGYRFDISVAVHCLYDIERIK
                     DRGKYSRFFGILHHLALINRFTLNDCLAHAYDQIKDRKGEMQAGIWVKEDDL"
     gene            4762..4932
                     /locus_tag="PXA71_001886"
                     /pseudo
     CDS             4762..4932
                     /locus_tag="PXA71_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253375.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5168..5659
                     /locus_tag="PXA71_001887"
     CDS             5168..5659
                     /locus_tag="PXA71_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5105972.1"
                     /translation="MQTKPILDACCGSRMFHFDKQNPLVLFADNRQIETTMKDRDKIR
                     HLEIKPDVLHDFTNMPYENESFWHIVFDPPHLVQGGENSWLVKKYGKLPCNWREVLKK
                     GFDECMRVLKPNGTLIFKWNETQIPVSEILKVIDCQPIYGHKSGRLNQTHWLAFVKIE
                     QSL"
     gene            5686..5943
                     /locus_tag="PXA71_001888"
     CDS             5686..5943
                     /locus_tag="PXA71_001888"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105973.1"
                     /translation="MEQIKLSEKAERALILSQLNENSAMIIDLDDVALILNCGYDYVQ
                     SKISKKPGFPEPVQGINGKSVLFKSGDVIRWVNRQARTRKN"
     gene            complement(5940..6929)
                     /locus_tag="PXA71_001889"
     CDS             complement(5940..6929)
                     /locus_tag="PXA71_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5105974.1"
                     /translation="MASIRKRGSKYQVEISKKGVRKSATFRTKAEAQAWAYEEERKIE
                     IISKGGVVDILFAEALERYQNEVSINKRTWRREIGRINNILKEPIANRYVQDIKRDDI
                     EDWIEARLKRGLKGSSVERDLSILSNVFTYCLKRWGYISENPMIGVIHPNKVPPRKQR
                     YSQEDIDKILEVSKYREDIKRSNARLAAAMLFAIETAMRAGEISGLTWDNVNFEKRIA
                     HLPMTKNGSSRDVPLSSKAIEILKRLETIKKDNSVFQLPQGNGLSARFFELKEKAGLS
                     YLNFHDTRREALSRLAKKVDVMTLAKISGHKDVKILLNTYYAPNMEEVAHLLD"
     gene            7402..8805
                     /gene="asnS"
                     /locus_tag="PXA71_001890"
     CDS             7402..8805
                     /gene="asnS"
                     /locus_tag="PXA71_001890"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HDL5105975.1"
                     /translation="MSKFPTVSEILSGKIAVGEEATVRGWVRTRRDSKAGLSFLSVYD
                     GSCFDPIQAIINNDLPNYNAEVLHLTAGCSVVVTGKVVESPAEGQAVELQASKVEVLG
                     WVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHCLAQAIHRFFHEQGFYW
                     VATPVITASDTEGAGEMFRVSTLDLENLPRGENGKVDFNQDFFGKESFLTVSGQLNAE
                     TYACALSKVYTFGPTFRAENSNTTRHLAEFWMMEPEVAFADLNDNAKLAEDMLKYVFK
                     AVLAERKDDMEFFVKHVDKEAISRLENFINSPFAQVDYTDAIEILLKSGKEFEFPVSW
                     GIDLSSEHERFLAEEHFKSPVVVKNYPKDIKAFYMRLNDDGKTVAAMDVLAPGIGEII
                     GGSQREERLEVLDQRMNEMGLNPEDYWWYRDLRKYGTVPHSGFGLGFERLIVYVTGLQ
                     NIRDVIPFPRAPRNANF"
     gene            complement(8905..9897)
                     /gene="epmB"
                     /locus_tag="PXA71_001891"
     CDS             complement(8905..9897)
                     /gene="epmB"
                     /locus_tag="PXA71_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HDL5105976.1"
                     /translation="MQPIQIKPLWLTELAQAFNNPIDLLQFLELNPNDFEGDIAARKL
                     FALRVPRMFAEKMEKGNPNDPLFLQAMSLQAEFIEAEGFVVDPLEEQQSPAPNILHKY
                     HNRLLFMLKNSCAINCRYCFRRHFPYEEVKSGKAVWQQGLTYIAEHPELEEVILSGGD
                     PLMAKDQDLDWILTQLEQISHIKTLRIHSRLPVVIPNRITTELCERLSKSRLNVVLVT
                     HINHANEIDAVFANKMAQLKKAGVVLLNQSVMLKGVNDNAQTLKRLSDKLFEYGILPY
                     YLHLFDKVAGASHFYIEDEQAGEIYRELQRITSGYLVPKLAREIAKEPNKILKG"
     gene            complement(9951..10520)
                     /locus_tag="PXA71_001892"
     CDS             complement(9951..10520)
                     /locus_tag="PXA71_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105977.1"
                     /translation="MKKLITLSAILAVSVATVAEAKRGGGSFRSVSPSKAVATKPVAS
                     QKSTTNQQTQQKDATFANTPNSATAQPQVRQGSTMANVAMGAAAGYILGDMMSSNAHA
                     NQPSQPADANAQAVNSAQNVANGAVPAIAEFKSIGGQIDPFLVEKTDGYRRYCISGVQ
                     YLVAAQGVQTSPTVMVNPNGTPLQCNLIP"
BASE COUNT         3375 a         2211 c         2163 g         2861 t
ORIGIN      
        1 acgccctgct ttttatggtt gccatcaccc tcctaatgca atgaagagct tatccctgaa
       61 agcacctgca agcctgaaac ttgcgaattt aaagtaacgg agaaagtgtg atgataggat
      121 acgaagacta cacagatgct tcacttcaac cagaagaaga ccctagcgaa gaggctttca
      181 tcttggctga agaaaacatc atcgagctat tagaaaacaa cggctttgaa accattgcca
      241 ccatcctagc cggttctgat ggctggcgta acgcaatcaa cgcctaccta gccgaacaga
      301 acaaacacag aaatgaattt tagaggaata agaaaatgac aactgcaaat caacaatttg
      361 aacttatttt aaaaaccgaa agccgagtgg tttctaccaa cttgcaaact tttgaagagc
      421 aagcaaatca ataccttgcc acgctcacca ccacctttga aaccgatgat gattttgcaa
      481 aagcaaaaga agaagtgaag gagcttgaaa gcattgagaa aaaaattcgt gacgcaatta
      541 aacaaacgca aactggcgag attgcggaat tggtattaac agcagaacaa atcgctgaac
      601 gtttccgcca agagcgatta acccgagaca agctcgttaa gagcaaagaa acggaaatca
      661 aaaaacagat tgccgataaa gccattgaag aaatcactga taccagaaac aagctggtta
      721 aagtaagtga tatttccctt gccttagaaa tcacaatgcc aaaacacggc attgctaatc
      781 gtattgccga ggcacagaaa aataaacgca cgattgacag cttaaccaaa gccgtgaacg
      841 ccgaaaaagc gctgattatc agcgaaatgt cggtagaaat cgggcgcttg actgagcgat
      901 tagaacagct tgctgcaaaa tcagcttatc tttttcctga tgcagtgaaa ttgatcgcaa
      961 cccaagacga cctcgcccca attattcaac aacgccttgc cgaagaagcc gagcgtgagg
     1021 cggcgattaa agccaaagca gaagccgaca aagtacaagc cgaagccaaa gcgattactg
     1081 ataaaatgga gcgcaaacaa gcggtcgaaa atccgcaaaa tgtggcaaaa atgaacatcg
     1141 aagaaccggc acaaaccgat gggccattag gcgattttat cattactatt cgcttaaacc
     1201 aaacaatcca aaccaacgca gtcagtattg ctcgtgagct gaaagcgaaa tttggggata
     1261 gcgtttcgct caataaggct aaatgatttg ataccgcaca aattcaacct aaataaggat
     1321 catattatga caactgcatt acaaacacta accaacaaac ttgccgagcg ttttgaaatg
     1381 ggagatggct caggattagt tgagacactt aaatcgtctg ctttcgcagg ggcaaccgta
     1441 agcgatgctc aaatgattgc actattggtt attgctaacc aataccaatt aaacccttgg
     1501 acaaaagaaa tttatgcatt ccccggtggg aacggtggat taacgcctat tgtcggcgtt
     1561 gatggttggg ttcgcattat taaccgtgag cctcaatatg atggaatgga atttcatttt
     1621 accgatgact attccgcctg tacttgtact atctaccgta aagatagaag taaaccgatt
     1681 gtggtgacgg aatttatggg ggaatgtaaa aagagctctc cagcttggaa ctctcaccca
     1741 aaaagaatgt tacgccataa agcaatgatc caatgtgcaa gattagcctt tggctttacg
     1801 ggtatttacg accaagacga agcagagcgt attgcggaaa atgaaaaacc acctaaaaac
     1861 atcacaccac aaaataacgt ggtagaaacc actgccgttg aactcatttc ggaagaacaa
     1921 ctgtcgcaaa tccggcagtt aatgcaagta accggtacgg aggaggcgaa aattctcgcc
     1981 tatattggcg ttcaagcact gaaccaaatc cctaaatcgc aggcagaggc agtgattaaa
     2041 aagctcaatc ttacgctaga caagcaaaac gctgaaaagg cggataatgg cgaaagtgtc
     2101 ggtgaggaaa tcccactatg acaggcgatt taatcatttt agattgcgaa caaggatcag
     2161 aagaatggct caatgccaga ttgggcattc ccaccgccac aggcattgaa aatatcgtta
     2221 cgccaagcgg taaaaaatcg tccgcttgga atagctatct tgccgaactg gttgccgaaa
     2281 gcattgaggg agcaaaagac ggttttaagt cgtctgatat ggcacgaggc aacgagcttg
     2341 aaccgcttgc acgaatggct tacgagtttg aaaccgacac cgaagtcgtg caagtcggcg
     2401 gtgtgtacct taacgccgaa aaacagttaa tggtaagtcc tgacggctta attcccaatc
     2461 taaaaaaagg gttggaaatc aaatgcccga aaatgaaaac ccacatcaaa tacctgctag
     2521 aaggcggtgt gccgaatgaa tatcttattc aagtgcaatc tgccctttgg gtaacaggct
     2581 acgaaacgtg ggactttgtc agctactgcc ccgaatacca aaaacaaccg ctttacatct
     2641 acacagccga acgtgatccg gtattgatga aagcctttga tcaatatatc ccgcaattta
     2701 tcaaatccct ttatgcattg aagggggtaa ccgccccgaa aggggctttt taataggtag
     2761 ccaatatgac aacccaaaag aaatacgaac tactccaaaa cgacacaatc aaccacaacg
     2821 gcagaacact ctaccgcatc aaagccatat gccactttag gcggacggct gaatattccg
     2881 caagagccac tcacgccaca gccgctgaat gctatggtgg aattgcctgt acatcaacat
     2941 aaccacaaac acggagaata aaatgaaacc atttgattta aataaagcat tggcaggtga
     3001 gccagtaaaa ctaagaaata atgataaggc atttgtaaaa tacctaatta gtgatgacta
     3061 tattagagat aataaagacc accaagtaca agggtataca gttgatgaag aaaatgtatt
     3121 tttgtcagaa gtatcgtggg ctgttagcgg atctcatttc aatgatggaa caatagctca
     3181 atatgatatt gttggtatgt gggaagaacc aagaccagca gtaacattga cgttaccttg
     3241 cccattaaaa gaacctcaag aaaatatgtg gtttattgac aatgatttta ccatagtaaa
     3301 atctatgttc gcaaatgccc cctttgtaaa aaaattcttg ccacaagggc gatgtttcgc
     3361 ttcagaagaa gacgctcaag aatggttaga tgcaatgcga aatagtcgta ggtaaatcgg
     3421 cagcactaac agctgaatgc tgctgttgaa tttcttgtat atccacataa acacggaacg
     3481 cggagaaaga aaatgaatga agaaaaatat ttttcggtcg atgtctcgga tgagacacat
     3541 gtaataaggt tgcacgaaac attagagcaa gcaaaacaaa gctgtttaaa tggtgctact
     3601 gaagcctatg agtttgcggg tgacatggat gatcacgaaa gctatgaaag ctatgaagcc
     3661 tatgatttac cctatgcagt ttatggtgtt gttttaggta gagcaaaatc agatattcgt
     3721 ccactaacag acgaagaaag agcatcggag ttatttgggg aagctgaaca agttattgaa
     3781 ccaccaacac ttttagaaaa caacggctgg atttccattg aggacaaatt accacctatt
     3841 gaaacggatg tgctagggtt atgcgatatt tcaggaatgc agttaatttt aatagtttca
     3901 agagaacttg ccgataacga gtggtatttt cttagtgtaa atcaatatgg gcttgatgac
     3961 gatgtgattg cagtaaccca ctggcaacca cttcccgaac caccaaagga ggaaaaatga
     4021 ccgacaccga acgcttagac tttatcgccc aacgcaaatt agatgtccga tattctgatt
     4081 tggtggacga atttattatt gctagctata ccaaaccgca cgagcagtat tttcattggg
     4141 caagaaatgc cgatttacgc acggcgattg atgaagcaat gaaagaaatg agaggactaa
     4201 acaatgcaac aactaattaa aaacatcgaa caatgggcgg aagaccgcaa tttaattaac
     4261 ggctcaaccc cacaaaagca aatgctcaaa ctgatggaag agtttggcga actctgcgga
     4321 ggcattgccc gcaataatcc tgaaatgatt aaagatgcga ttggggattt gattgttgtc
     4381 tgtattatta aagcaaaaca agaaaaacaa cctatttacc ctgtacaatt tgaaaatcat
     4441 agattaaatg gttacagatt tgatatttcg gtcgctgttc attgtctata tgatattgaa
     4501 cgcattaaag acagaggtaa atatagccgt ttttttggca tattacacca tttagcctta
     4561 ataaatagat ttacgcttaa tgactgcctc gctcacgcct acgaccaaat caaagatcgc
     4621 aagggcgaaa tgcaagctgg gatttgggtt aaagaagacg atttatagta cctaagctat
     4681 aaaaaccgaa acatcttgca gaaaagcatt ccgccactct ataagagttt cggtttcttc
     4741 ttcgttggcg ttgattatgt ttacacgcac gctaccgagt atcaaaccac gcttggcgta
     4801 atgaagcgga tacttgaacc gatgttagcc gacttcgagg tcgatccgtt tgaagaggct
     4861 cactaccaca aagccctaac taccttaagg caataccagc cgaaaggctt aggcggctta
     4921 gtccgaattt aatttgcaaa aaaatcacac aatccgaccg cttgtgaaac aacaagcggc
     4981 ggatttccat acccaaattt tgaggacaag ccgatgaaat acgcaaaaat cattctattt
     5041 ttaaccgcct ttgcagttgc tgctgaccat ctagagttac gcaacgactg cgatggcaaa
     5101 atttgtatgg ctcaacgcta attaacccaa ccgcttgttc cgcaagcggt tattttttgg
     5161 aggaaaaatg caaacaaaac cgatattaga tgcgtgttgt ggttcccgta tgtttcattt
     5221 tgacaagcaa aatccactcg tcctgtttgc tgataatcga caaatagaaa ccacaatgaa
     5281 agaccgagac aaaatccgcc atttagaaat caaacctgat gttttacacg atttcacgaa
     5341 tatgccatac gaaaacgaga gtttttggca cattgttttt gatccgccac atttagttca
     5401 aggtggagaa aatagctggc ttgtaaagaa atacggcaaa ttaccttgca actggcgaga
     5461 agtcttgaag aaaggctttg acgaatgtat gcgagtgcta aaaccaaacg gcacgcttat
     5521 tttcaagtgg aatgaaacac aaatccccgt ttcagaaatt ttaaaagtta ttgattgtca
     5581 gccgatttat ggacacaaaa gcggacgctt aaaccaaaca cattggctgg cgtttgtgaa
     5641 aattgagcaa tccctctaaa tgaggggttt atttttggag agaatatgga acaaattaaa
     5701 ctttcagaaa aagcggagag agccttaatt ctttctcagc tcaacgaaaa ttcagcaatg
     5761 attattgatt tagatgatgt tgccctgatt ttgaattgcg gatatgacta tgtgcaatcc
     5821 aagatcagta aaaagcccgg tttcccagag ccagtgcaag gcattaacgg gaaatcagtt
     5881 cttttcaaaa gtggcgatgt tatccgttgg gtcaaccgtc aagcacgaac acgcaaaaat
     5941 taatccagca aatgagcgac ttcttccata tttggggcgt agtaagtgtt aagcaaaatc
     6001 ttcacatctt tatgccctga aattttggct aaggtcatca catcgacttt ttttgccaag
     6061 cgtgaaagag cctctctcct cgtgtcgtga aaattcaaat aagaaagccc agccttttct
     6121 tttaactcaa agaatctagc acttaaacca ttcccttgtg gaagctgaaa aacggaatta
     6181 tcctttttga tggtttccag tcttttcaag atctcgattg cctttgatga taacggaacg
     6241 tctcttgatg aaccgttttt tgtcataggc aaatgagcta ttcttttctc aaaattcaca
     6301 ttatcccacg ttaaacccga aatctcaccg gcacgcattg ccgtttcaat cgcaaataac
     6361 atagccgcag ccaatcgagc attagagcgt ttaatatctt ctcggtattt gctgacttct
     6421 aagattttat caatatcttc ctgggaataa cgctgttttc ttggtggcac tttgtttggg
     6481 tgaataacac cgatcatcgg attttcacta atatagcccc agcgttttaa gcagtaggta
     6541 aatacattgc ttaaaataga caaatccctc tcaacacttg agccttttaa ccctctcttc
     6601 aatctagctt cgatccaatc ttcaatatca tctcgcttaa tatcttgtac ataacgattc
     6661 gcaataggct ctttcaatat gttattgatt cgacctatct ctcgtcgcca cgtcctctta
     6721 ttaatcgata cttcattttg ataccgctct aacgcttccg caaataaaat atcaactacc
     6781 ccacctttcg agatgatctc tattttacgc tcttcttcgt aagcccatgc ctgtgcctct
     6841 gcttttgtgc ggaaggtagc tgattttctc acccctttct tcgagatttc gacttgatat
     6901 ttactgcccc gcttgcgaat gctcgccata tttttacctg ccttttgtcg taaatttgtc
     6961 gtaatttata ccatacaata accgacaata acagataata accgatttta tgaaatcatc
     7021 ttaaggcaaa gaagagagga aaaacttaag ataacctatt gaaataacta taataaacga
     7081 taataaccga caaaaaacgg aaataaaaaa aagcccctaa tcaaaaaagc gaaaaggggc
     7141 ggaagtctta cctaaggaaa tatgaaaaaa acttgcataa atctgttaca tatactcaga
     7201 ctgcctaact gaacgaaagt tcattaaaaa ataaaaaatt ttttaacacc aagcaaaatc
     7261 agatttaact acttgcaatg cttatataga ctcacaaatt tgcaaataat tccgtaaaat
     7321 tattatattt ccccctattt tcttgtagaa tacggaacgt ttcttatatt aaaactcaca
     7381 acaaagaatt tgaggtattc aatgtctaaa tttccaacag tttcggaaat cctatccggc
     7441 aagatagcgg taggtgaaga agcgacagtg cgtggttggg tgcgtacccg ccgtgattca
     7501 aaagccggtt tatctttctt gagcgtttac gatggttctt gctttgaccc aattcaagcg
     7561 attattaata acgatctacc aaattataat gccgaagtat tacatttaac cgcaggttgc
     7621 tctgtggtgg tgaccggtaa agttgtggaa tcccctgctg aaggtcaagc cgttgaatta
     7681 caagcaagta aagtggaagt gcttggttgg gtggaagatc ctgataccta cccaatggca
     7741 gcgaaacgcc actctatcga atatctgcgt gaagtcgctc acttacgccc tcgtacgaac
     7801 ttaatcggtg cagttgctcg tgttcgtcac tgtttagctc aagctatcca ccgtttcttc
     7861 cacgagcaag gtttctattg ggtagcaaca cctgtaatta ccgcctcaga tactgaaggt
     7921 gcaggtgaaa tgttccgtgt ttctacgctg gatttagaaa atctacctcg tggcgaaaac
     7981 ggcaaagtgg attttaacca agatttcttc ggtaaagaat cgttcttaac cgtatccggc
     8041 cagttaaatg cggaaaccta tgcgtgtgcc ttaagtaaag tttatacttt cggtccgaca
     8101 ttccgtgcag aaaactcaaa cacaactcgc catcttgcag aattctggat gatggagccg
     8161 gaagttgcct ttgccgactt aaacgacaat gcaaaattag ccgaagatat gctgaaatat
     8221 gtgtttaaag cggtgcttgc agaacgtaaa gatgatatgg aatttttcgt taaacacgtt
     8281 gataaagaag cgattagtcg tttagaaaac tttatcaatt cgccatttgc tcaagtagat
     8341 tacaccgatg cgattgagat cttattgaaa tccggcaaag aatttgaatt cccggtgtct
     8401 tggggaatcg atctttcctc tgaacacgag cgtttcttag ccgaagaaca ctttaaatcg
     8461 ccggtggtcg tgaaaaacta tccaaaagac attaaagcct tctatatgcg tttaaatgat
     8521 gacggcaaaa cggttgccgc aatggacgtt ttagctccgg gaatcggtga aattatcggt
     8581 ggttctcaac gtgaagaacg tttagaagtg ttagatcagc gtatgaatga aatgggctta
     8641 aaccctgaag attactggtg gtatcgtgat ttgcgtaaat acggtacagt gccacactca
     8701 ggtttcggtt taggtttcga gcgtttaatc gtgtatgtaa ccgggttaca aaacattcgt
     8761 gatgtaatcc cattcccacg tgctccacgc aatgcgaact tctaatttgc aaaaaagtaa
     8821 gagaatttaa ccgcttgcaa caagcggtta aaaaaggcga aaattttacc attttcgcct
     8881 tttgtttctt gatttctgtt taagctaacc tttcaaaatt ttatttggct ctttcgctat
     8941 ttctcttgcc agctttggca caagatagcc tgaagtgata cgctgtaatt ctcggtaaat
     9001 ctcaccagcc tgttcatctt caatatagaa atggctcgcc cctgccactt tatcaaataa
     9061 atgcaaatag taaggcaaaa tcccatattc aaaaagttta tcacttaacc tttttaaggt
     9121 ttgagcatta tcgtttacac cttttaacat caccgattga ttcagcaata caacgccggc
     9181 ttttttcagt tgagccattt tgtttgcaaa aacagcatca atttcattgg cgtgattaat
     9241 atgggtaacc aacacgacat tcaagcgaga ttttgataac cgttcacata attctgtcgt
     9301 aattcgattg ggaataacga ccggcaagcg tgaatgaata cgcagggttt tgatatgcga
     9361 aatctgctct aattgcgtta atatccaatc taagtcctga tcttttgcca tcagcggatc
     9421 accaccggac agaatcactt cctccagctc gggatgctca gcaatataag ttagtccctg
     9481 ttgccacaca gctttaccgc ttttcacttc ctcataaggg aaatgacggc gaaaacagta
     9541 acggcagtta atcgcacaac tgttttttag cataaataac aaacggttat ggtatttatg
     9601 taaaatattc ggtgctgggc tttgttgctc ttccaatgga tctaccacaa acccttctgc
     9661 ctcaataaat tccgcctgta aagacattgc ttgcaaaaaa agcggatcgt ttgggttacc
     9721 cttttccatt ttttcggcga acattcttgg cactcgaaga gcaaataatt tacgggcagc
     9781 tatatcgccc tcaaaatcat ttggattgag ttcaagaaat tgtaataagt cgatagggtt
     9841 attaaaggct tgagccagct cggttagcca aagcggtttg atttgaattg gttgcattga
     9901 atattgtaga tacaaggggc aggtttttgc ctgcccgcaa ataaaaataa ttatggaatt
     9961 aagttacatt gtaatggcgt gccatttgga ttaaccatta cagttggtga ggtttgtaca
    10021 ccttgtgcag cgactaggta ttgcacgcct gaaatacaat aacggcgata accatcggtt
    10081 ttttctacta aaaacggatc gatttgaccg ccaatactct taaattctgc aatagcagga
    10141 actgctccat ttgcaacatt ttgtgcagaa ttgaccgctt gtgcatttgc atccgcaggc
    10201 tggctaggct gatttgcatg tgcatttgat gacatcatat cacctaaaat ataaccggct
    10261 gctgccccca tcgctacatt tgccatcgtg ctgccttgac gcacttgtgg ctgggcagtt
    10321 gcactgtttg gcgtattggc aaaagtagca tctttttgtt gcgtttgctg atttgtggtt
    10381 gatttttgag aagctaccgg cttagttgct accgcttttg acgggctaac tgaacggaag
    10441 ctcccaccgc cacgttttgc ctctgccacg gttgcaacag aaacggctaa aatcgcagaa
    10501 agagtaatca gttttttcat tcgcattcct tatcaataaa gtttgaaaaa ttatagcaaa
    10561 aatcgcaaga gatctttcgc taattttgtg aatttaggtt attatatggc
//
LOCUS       DANLRW010000086        10598 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.086, whole genome shotgun sequence.
ACCESSION   DANLRW010000086 DANLRW010000000
VERSION     DANLRW010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10598
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.086"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..851
                     /locus_tag="PXA71_001893"
     CDS             <1..851
                     /locus_tag="PXA71_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5105978.1"
                     /translation="TLLFSFIALSMCLNTTKAAEKIVSTAGYASEIVAALGKADKLVG
                     VDTTSVKPQTIMEKKPKIGYRRQLSAEGILSLTPDLIILAPDAGPNAVIEQIKASGIP
                     LLHLGEKPSLAGIREDIQQIAKAIGAESEAKQLTETILADEKKLADIRSQHSTDKEVL
                     VLIDTASQGIFGLGKKSVGDHFLTLLNLNNSFNAEGNKPLANEALAASNADVILLASR
                     NQAKESATISKLAESSPQYAQLTNTQAGKKGCVFAINILDALGFGPYTAQYAHQILTT
                     IQPCLK"
     gene            862..1848
                     /locus_tag="PXA71_001894"
     CDS             862..1848
                     /locus_tag="PXA71_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDL5105979.1"
                     /translation="MKLHLTLIFTLIISLVICTHLGAMSLPLSAWHCNNAECESAAYI
                     LWQIRLPRLLGALFIGAALAISGATMQGLFRNPLVDPGIIGVSSGAALAAALYIVVIQ
                     PLLPESISYYALPIAAFLGGWLVTFMLYLLSQRNGQLHIAIMLLIGIALAAFSGALTG
                     ILIYVADDNQLRSLTFWSMGSLAGMNWQMVAMMAAVVFICSPLIWREHRALNALTLGE
                     EDAQYIGFDIAKVKRRLVFYVALLTGTSVACVGAIGFVGLVIPHLMRLLGGSNHRHLL
                     LNSLVCGAILLMIADTLARTLAAPAEIPIGIFTALFGAPFLAVMVWKSGKHI"
     gene            1848..2654
                     /locus_tag="PXA71_001895"
     CDS             1848..2654
                     /locus_tag="PXA71_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5105980.1"
                     /translation="MSNLLTCQNLSIVHQQKKLLEIQEIAFEQGKFTAIIGPNGAGKT
                     TLLKALSGNNAQTNSAVFYQHQRLTDLNGYALAQKRAMLSQQSQIAFPLKVEELVQLG
                     REPYRQSEFAKFNEKITAWAMETMSLTALKERSSIQLSGGEQHRAHIARVLAQLVPEP
                     NADLSGSWLLLDEPTNHLDIHHQYQLFSLLQKLKQQGLTIIAILHDPALAINQADHIL
                     MLKNGEKFAEMSAKAIAESCLLDELYEMKMGCRYCPHSGQYYLCPALAES"
     gene            complement(2675..3313)
                     /gene="purN"
                     /locus_tag="PXA71_001896"
     CDS             complement(2675..3313)
                     /gene="purN"
                     /locus_tag="PXA71_001896"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDL5105981.1"
                     /translation="MKKFVVLISGNGSNLQAMIDAQKSADTSGQICGVICNKADAYGL
                     IRAKQAGIPTFVFSRKDYQSNVEMDLAIAEQIEQLGAELIVLAGYMKILTPEFTQHFA
                     GKILNIHPSLLPKYPGLNTYQRAIEAGESEHGTTIHFVNEEVDAGAVVLQAKVPIYPE
                     DEIEDVMARVVEQEHRYYPLVIEWFCSGRLVSQHGKAYLDGKLLPACGYAED"
     gene            complement(3420..5577)
                     /locus_tag="PXA71_001897"
                     /pseudo
     CDS             complement(3420..5577)
                     /locus_tag="PXA71_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484758.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(5631..6467)
                     /locus_tag="PXA71_001898"
     CDS             complement(5631..6467)
                     /locus_tag="PXA71_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HDL5105982.1"
                     /translation="MLPRISSFLASLFMAFFLLGCSVSTQSLNEQNVDSIGQIIDLNT
                     NQTISFTELLSRLSSQDYVLVGEEHTQLIHHQIELYLFNQLTKKAKLHLIALEMLNVD
                     QQPAIDRIQFNRPVNLSATDLREAIQWQKWDWKMYQDLVVESLGSNSRVIATNLTDKE
                     VEILLNGAEPLKGSVSTSSEVKQKIAQLLLSMNHGMPYPMENMVAVQQFRDRRMAEKL
                     VKNALSTSLLIAGNHHVRKDLGVPLHIAEYDRTKKVAVLMLKTEREEITSSQADYLWV
                     TQ"
     gene            complement(6625..7887)
                     /locus_tag="PXA71_001899"
     CDS             complement(6625..7887)
                     /locus_tag="PXA71_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000919159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDL5105983.1"
                     /translation="MLKRDMNIADYDAVLWQAIQDEDRRQEEHIELIASENYASPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKALFGADYANVQPHSGSQAN
                     AAVYMALLNPGDTILGMSLAHGGHLTHGASVSFSGKIYKAEQYGITDEGLIDYEALRK
                     QAQEVKPKMIVAGFSAYSQVMDWAKMREIADEVGAYLFVDMAHVAGLIAAGVYPNPLP
                     HAHVVTTTTHKTLAGPRGGLILSASGDEEMYKKLQSAVFPAGQGGPLMHVIAAKAVCF
                     KEALEPEFKAYQQQVVKNAKAMVEVFKQRGFDVVSNGTENHLFLVSFVKQGLTGKAAD
                     AALGAANITVNKNSVPNDPQKPFVTSGIRVGTPSVTRRGFKEAEVTALAGWMCDVLDS
                     IGKDNHEQVIAETKAKVLDICKRLPVYA"
     gene            complement(8163..8384)
                     /locus_tag="PXA71_001900"
     CDS             complement(8163..8384)
                     /locus_tag="PXA71_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5105984.1"
                     /translation="MLNLFKKPIKKSSFEAWAKLMDDVAKVAILAIPVILYGEYSLLM
                     KFTHSITLFAVVYFLLATARLFRETAEEM"
     gene            complement(8472..9503)
                     /locus_tag="PXA71_001901"
     CDS             complement(8472..9503)
                     /locus_tag="PXA71_001901"
                     /EC_number="2.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine synthase"
                     /protein_id="HDL5105985.1"
                     /translation="MSNILLPTSTAGSLPKPSWLAEPEKLWSPWKFEGEELLQAKRDA
                     LLVSLAEQIAAGIDIVSDGEQTRQHFVTTFIEHLEGVDFSKREIVRIRNRYDASVPSV
                     VGAVSRPKSVFVDDAKFLRAHTDKPIKWALPGPMTMIDTLYDGHYKSREKLAWEFAKI
                     LNEEAKELEAAGVDIIQFDEPAFNVFFDELNDWGVAALERAAEGLKCETAVHICYGYG
                     IKANTDWKQTLGNEWRQYEESFPKLQQSKIDIISLECQNSRVPMDLIELVRGKKVMLG
                     AIDVATNIIETPEQVADTLRKALQFVDADKLYPSTNCGMAPLSRQVAQGKLQALSQGA
                     AILRAEFAK"
     gene            complement(9591..10568)
                     /locus_tag="PXA71_001902"
     CDS             complement(9591..10568)
                     /locus_tag="PXA71_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1852 domain-containing protein"
                     /protein_id="HDL5105986.1"
                     /translation="MTTNFKCQVHTIEFNEDYQPEQSTRLTTNFANLARGENRKQNLQ
                     NAIAMINNRFNDLANWDNPNADRYSVKLDIVSLDIDVEGKGEFFPAIEWLKTYVIDYK
                     TGKTIDGIIGNNFSSFVRDYDFSVLLLDHNKDKPQFSVPEGYGELHGKLFKHLLASPE
                     YTAKYKKPPVICLSVATTRTYTRTTNVHPILGVEYLQDSYSLTDAYFAKMGLKVRYFM
                     PPKSVAPYAFYFDENADLLNDYTNLELISTIATMEAFQKIYRPEIYNANSVAGQVYKG
                     SLTYQDYSVTKVEYDREERTQLAIKQGKYTEEHFIKRYQAILEAWATEE"
BASE COUNT         3014 a         2322 c         2052 g         3210 t
ORIGIN      
        1 gaaccttact tttttctttc attgccctat caatgtgttt aaataccaca aaggcggcag
       61 aaaaaattgt ttcaactgcg ggctatgctt ccgaaattgt cgcagcacta ggaaaagctg
      121 ataagttagt cggtgtggat accacttcag ttaaacctca aacgataatg gagaaaaaac
      181 ctaaaatcgg ttatcgtcgc cagctttctg ctgaaggtat tctctcttta accccagatt
      241 tgattatttt agcccctgat gccggcccta acgcagttat tgagcaaatt aaagccagcg
      301 gtattccatt acttcactta ggagagaaac cgagcttagc agggattcgt gaggatattc
      361 agcaaattgc caaggcgatt ggtgcagaat cagaggcaaa acaattaaca gaaaccattc
      421 tggcagatga aaaaaaatta gccgacattc gtagccaaca ttctactgac aaagaagtct
      481 tagtgctgat tgacactgca tcgcaaggta tctttgggct agggaaaaag agtgtgggtg
      541 atcatttctt aaccttgtta aatctaaaca atagtttcaa tgctgagggc aataagccac
      601 tcgccaatga ggctttagct gcaagcaatg ccgatgttat tttattagcc tcccgtaatc
      661 aggcaaaaga atctgcaacg atcagtaaat tagcagaatc cagcccacaa tacgcccaac
      721 tcacaaatac acaagcgggc aaaaaaggct gtgtttttgc aatcaatatt ttagatgcct
      781 tgggctttgg gccttacact gctcaatatg cacaccaaat tctcaccact attcaacctt
      841 gtttaaaata acggatacgc tttgaaactg catttaacct taattttcac tttaattatc
      901 agcttagtga tttgtaccca tttaggggcg atgtcattac ccctatccgc ttggcactgc
      961 aacaacgctg aatgcgaaag tgcagcctat attttatggc aaatccgcct gcctcgatta
     1021 ctaggggcat tattcatcgg ggcagccctc gctattagcg gagcaacaat gcaagggctg
     1081 tttcgcaatc cgttagtaga tccggggatt attggtgtct cttcaggtgc tgcattggct
     1141 gcggcattat atattgtggt gattcagcca ctactgccgg aatcaatcag ctattatgct
     1201 ctacctattg ccgccttttt agggggctgg ctggtgactt ttatgctcta tttactttct
     1261 caacgtaacg ggcaactaca tatcgccatt atgctattaa ttggtattgc tctagctgca
     1321 tttagtggcg ctttaaccgg catactgatt tatgttgccg atgataacca acttcgtagt
     1381 ttaacctttt ggagtatggg atctttagca ggtatgaatt ggcaaatggt ggcaatgatg
     1441 gctgcggttg tcttcatttg tagcccactt atttggcggg aacaccgtgc gttaaacgcc
     1501 ttaacattag gtgaagaaga tgcacaatac attggttttg acattgcaaa agtcaaacgt
     1561 cgtcttgtgt tttacgttgc cttattaacc ggcacaagcg ttgcctgtgt tggggctatc
     1621 ggctttgtcg ggctggttat tccacattta atgcgtttac tgggaggcag taaccaccgc
     1681 catttattac tcaatagttt ggtttgcggt gcaatcttat taatgattgc agatactctt
     1741 gccagaaccc tagccgcccc ggcagaaatc ccgattggta tttttaccgc cttatttggt
     1801 gcgccattcc ttgcagtaat ggtatggaaa agtgggaaac atatctaatg agcaatttat
     1861 taacttgcca aaatttaagc atcgttcatc aacaaaaaaa gttgctggag attcaagaaa
     1921 ttgcctttga acaaggaaaa tttaccgcca tcatcggtcc aaacggagcc ggcaaaacaa
     1981 ccttgctcaa agccttaagc ggtaataatg cacaaactaa cagtgccgta ttttatcaac
     2041 atcaacgctt aacagactta aacggatatg ctctggctca aaaacgggca atgctcagcc
     2101 aacagagcca aattgccttt cccttaaaag tagaagaatt ggtacaactc ggaagagagc
     2161 catatcgcca aagtgaattt gcaaaattta atgaaaaaat aaccgcttgg gctatggaaa
     2221 caatgtcttt aaccgcatta aaagaaagaa gtagcataca actttccggt ggagaacaac
     2281 atcgagcgca tattgctcga gtgctggctc aactcgttcc tgaaccgaat gccgatttaa
     2341 gcggaagctg gcttttgctt gatgaaccca ccaaccattt ggatattcat caccaatatc
     2401 agcttttttc cttactacaa aagctgaaac aacaaggctt aactatcatt gcgattttgc
     2461 acgatcctgc attggcaata aatcaagccg atcatatctt aatgctaaaa aatggagaaa
     2521 aatttgctga aatgtccgct aaagccattg cagaaagttg tttattagat gagctgtatg
     2581 aaatgaaaat gggctgtcgc tattgccctc acagcgggca atattatctt tgccctgcat
     2641 tagctgaaag ttagggtgcg atgcacccta tcgtttaatc ttctgcatat ccacaagcag
     2701 gcagtagttt accgtctaaa tacgctttgc cgtgctgaga aactaatcta cccgaacaga
     2761 accactcaat caccaacgga taatatcgat gttcttgctc aaccactcga gccattacat
     2821 cttcaatctc atcttcagga taaatcggca ctttagcttg taataccacc gcaccagcat
     2881 ccacttcttc attcacgaaa tgaatagtcg tgccgtgttc actttcccca gcctctatcg
     2941 ctctttgata agtgtttagc cctgggtatt taggtaataa ggaagggtga atattgagta
     3001 ttttgccagc aaaatgttgc gtaaattcag gcgttaaaat tttcatatag ccggctaata
     3061 caattaactc agctcctaac tgctcaattt gttcggcaat cgcaagatcc atttccacat
     3121 tgctttggta atctttacga gaaaatacaa atgtcgggat tcccgcctgt ttagctcgaa
     3181 tcagcccata ggcatctgcc ttattgcaaa ttacaccgca aatttgaccg cttgtatccg
     3241 cagatttttg cgcatcaatc attgcttgta ggttagaacc attccctgaa attaaaacca
     3301 caaatttttt catattacac accggctgaa tattcatcgt tctggatatt atgccttgaa
     3361 tctcaacatc agtacaggaa agaaaaaggg cgtattggtt aaaataagcc actttcaagc
     3421 tagaaacgca cctctgcccc tagtgtgtaa gttcgacctc tggcactatt tgtgaaacga
     3481 taggtgtctg tatcatagtc atactcttct gcggtggaag agttatacgc atttaaggca
     3541 tcaagataat ttcggttcat cacattttgt accccggctt ttaaggttaa atgtttattc
     3601 actttgtaat ttgcatataa atcgataatc accggaatat tcggtaactg ctcgtgaata
     3661 atgttgccat cttcgtctaa atcaataccg acacgtttcg ctttgcctgt atatttaaaa
     3721 atgctagaca gtgttaattt tttatccagc aatttagccc ctagctccaa agtcgcataa
     3781 tcttttggta gctgggtata agcttcagtg ccaaatccat aaagaatagt cgcacctttt
     3841 gaagtgggtg ctgtgctttc agttcgggta taactaccat tgacaaaaaa agcatcggaa
     3901 tcgtaagcca gctcaacttc ccaacctcga tttttaacct tttcagggtg attcacataa
     3961 atttggaact gtatagcatt ggtagcatca cttgaatttc gacatactgt tggcccacaa
     4021 ccatacaacg agaggttata caaatagtct ttaatgcgtg agttaaaata taccgctttt
     4081 agccccaaga tatcattatt gagtaataca ttatcttgat gaatattaaa cccaatctca
     4141 taggttttcg cactttctgg tttcaaaaac gggttcacac tcaagccatt tcgactggta
     4201 ttaaacattt cttgcacatt aggcgaacgg gaggtttgtt tgtaactgac aaaaggttga
     4261 aaccaatcag caacctgaaa tgctaaagtg gcagaaggat tcaacttata atgtttttta
     4321 ttaacatcaa acccaaaaga agggaaacaa taatccatat catcgctatc gcattctggc
     4381 ttatatcctt ttaactgata gcgtgaatag tgaagacttg aatttaaagt gacaatgccg
     4441 tatttccatt cggtgtctag gtaaagggaa tcaatatttt gcttacctgc cggcccaaaa
     4501 gcggcattgc taatcgctcc atcattattc ttactttccg gtaaatcacg ggaatattta
     4561 tttccctgac tcaaaacggc tggtgttatt caaatcaaac atccacattt tgtttttggt
     4621 tgaggcatct tctaatgtcc atagttttgc atcatcgtgg aaatcttgct tagtttctgt
     4681 tactgctgtt aggaatttca gatcaatcca atcagattga ggctggtaac tggattctaa
     4741 ggaataggtc acactatcaa tattacgccc cactaagcta tttttatatt gacgtccgga
     4801 caatttaaac tctgaatctt gatttggctt aaaggcaatt tttcccatat aagattcagg
     4861 gtgatttttt aacccttgca tataagcaga atccgttgcc attgtgccat tacctcggcg
     4921 ataattttga ctgatactac ttttgctaaa agccaataaa ctgccaagag aaccactttc
     4981 cagcacatca acttttccgg ctagtgcaag cattccgttt tttcccagat cattattgcc
     5041 ataattaaaa cggcttaata cgccgacttt atgttgttct agtagaatat cttcgacatc
     5101 aatcgtttta aaattagcac taccggctaa agcattcaat ccggctgcac cattgttgta
     5161 gcctttcgca atatcaactc gggttaaaaa attttgatca attaaagtgc tgaattggct
     5221 cattggcccg ttaccatcag tgtggaactt accacctccg tttgctgatg taccaagctg
     5281 tgtttgtggc acgccatcaa ctaaggtatt tacccgacca agaccactca tattacgaat
     5341 attcacactc acgccccctt gccccgggtc aatttgggta tagccacctg cgacagaacg
     5401 gacaatacta tctaaacttt gcattgcatt cacattcatt gctcgagaac tcaccgagcc
     5461 ggctttactg aaattctcaa aattagggtt ttccacagtg ccataaaccg tcacagtatc
     5521 aagctccgca atatttttcg ccttttcctc tgccaatgca gtttgcgatc ctcccataca
     5581 caaaaccgga aacaaaatgc gtgtgattat attaaatttc ataattctcc ttattgagtg
     5641 acccaaagat aatctgcctg tgaagaagta atttcttctc tctctgtttt aagcattagc
     5701 accgctactt tttttgttcg gtcatattcc gcaatatgca acggaacgcc aagatctttg
     5761 cgaacgtggt ggttacctgc aatcagcaag ctagtcgata acgcattttt tactaatttt
     5821 tctgccattc tgcgatcacg gaattgttgt actgccacca tattttccat cgggtaaggc
     5881 attccgtgat tcattgacag caacagttgt gcgatctttt gcttaacttc agaggaagtg
     5941 gatacagaac cttttaatgg ctccgcccca tttaataaaa tttcaacctc tttatctgtt
     6001 aagttagtgg ctataacacg actatttgaa cctaagctct ctaccactaa atcttgatac
     6061 atcttccaat cccatttttg ccattgaatt gcctctctta aatccgtggc tgataaatta
     6121 accggtcggt taaactgaat gcgatcaatc gcaggctgct gatccacatt taacatctcc
     6181 aacgcaatta aatgtaactt ggctttcttc gtaagttgat taaataaata caattcaatt
     6241 tggtggtgaa ttaactgagt atgctcctca ccaactaaaa cgtaatcttg agaagataga
     6301 cgggaaagta gttcagtaaa tgaaatcgtt tgattggtat tcagatcaat aatttggccg
     6361 atagagtcca cgttttgttc attaagggat tgcgttgaaa ccgagcagcc taaaagaaaa
     6421 aaagccataa aaaggctagc taaaaaagag gaaatacgag gtaacataac aaaaaataaa
     6481 ttaatgagaa ttattatcat tatgttatgt aaaaaaagaa aaatcaatcc attttcagaa
     6541 aacagataaa gaaaatgatt gataaaacaa aaagcggtaa tatttctaaa aaatattacc
     6601 gcttgaaaaa gtgtaaagtt gagattatgc gtacactggt aaacgtttac aaatgtctaa
     6661 aactttcgct ttagtctctg caatcacctg ttcgtgatta tccttaccaa tgctatctag
     6721 cacatcgcac atccagccgg ctaatgctgt cacctctgct tctttaaaac cacggcgggt
     6781 cacagaaggc gtacccacac gaatacctga agtcacgaat ggtttttgag ggtcgttcgg
     6841 caccgagttt ttattcacgg taatgttcgc agctcctaat gcagcatctg ccgctttgcc
     6901 ggttaaacct tgttttacaa agctaacaag gaataaatgg ttttccgtac cgtttgaaac
     6961 cacatcaaaa ccacgttgct taaatacctc aaccattgct tttgcatttt ttacaacttg
     7021 ttgctgatat gccttaaatt ccggctctaa agcttcttta aaacaaaccg cttttgccgc
     7081 aataacgtgc atcaatggtc caccttgacc agcagggaat acggcagatt gcagtttctt
     7141 atacatttct tcatcgccag atgcagataa aatcaaacca cctcgagggc cggctaaggt
     7201 tttatgggtt gttgtcgtca cgacgtgagc gtgaggaagc ggatttggat aaactcccgc
     7261 cgcaattaag cctgcaacgt gagccatatc cacaaataaa tatgccccaa cttcatcggc
     7321 aatctcacgc atttttgccc aatccataac ttgagaataa gcagagaaac cagcaacaat
     7381 cattttcggt ttcacttctt gggcttgttt gcgtaatgct tcataatcaa ttaagccttc
     7441 atcagtaatg ccgtattgtt ctgctttata aattttacca gagaagctaa ctgaagcacc
     7501 gtgggttaaa tgcccgccgt gcgctaaact catacctaaa atagtgtcac ccggattaag
     7561 caacgccata tatacggctg cattcgcttg tgagcctgaa tgcggttgaa cgttggcata
     7621 atctgccccg aacaatgctt tcgcacggtc aatcgcaagt tgttctacaa tatccacata
     7681 ctcacaaccc ccatagtaac gtttacccgg ataaccttct gcatatttat tggttaattg
     7741 tgagccttga gcctgcatta cacgtgggct tgcatagttt tcagatgcaa ttaattcaat
     7801 atgttcttct tgacggcgat cttcatcttg aatggcttgc cataatactg catcgtaatc
     7861 agcgatattc atatcacgtt ttaacatttt tggactccta ataagcttaa gtaaacgttt
     7921 gcgtaagttg atttcacgtt attttacgca ttttttagtt tcatagatag tattatttat
     7981 ataaaaatta acttcgagtg aaagaaaaac aagcggtcac attttgtaaa aaatttacca
     8041 aatatgaccg cttagtatta ttcattgaat taatgattat gatcttttaa atgctttgcc
     8101 cattggtatg cagcaaatga aaatgcaagc aaaagaaata atccgattgt caatccgtcc
     8161 atttacatct cctctgctgt ttctcgaaac aatcttgccg ttgctaacaa aaaataaact
     8221 actgcaaata aggtaattga gtgtgtaaat ttcattagca gtgaatattc tccatagaga
     8281 ataacaggaa ttgctaaaat tgcaactttt gccacatcgt ccattagttt tgcccaagcc
     8341 tcaaaggagc ttttcttaat tggcttttta aatagattta gcatagtgcc tccgtcattt
     8401 cctgttattt tggaagaaaa tctggaaacg agcaaaaagc aaagttgata ttttcgatgc
     8461 agatcgcaaa attattttgc gaattccgca cgcaatatcg ctgccccttg gctgagtgcc
     8521 tgtaatttac cttgtgcgac ttggcgtgaa agtggtgcca ttccgcagtt ggtgcttgga
     8581 taaagtttat ccgcatcgac aaattgtaat gctttgcgta acgtatctgc cacttgttcc
     8641 ggtgtttcga taatgttggt agccacatca atcgctccca gcattacttt tttgccacgc
     8701 actaattcga ttaagtccat tggcacacgg gagttttggc actctaacga gataatgtcg
     8761 atttttgatt gttgcagttt cgggaaactc tcttcgtatt gacgccattc gttgccgagg
     8821 gtctgtttcc agtcggtatt ggctttaatg ccgtagccgt agcagatatg caccgccgtt
     8881 tcgcatttta agccttccgc cgcacgctct aacgccgcca cgccccagtc gttcagctca
     8941 tcgaagaaga cgttaaatgc cggttcgtca aattgaataa tatccacccc tgccgcttcc
     9001 aactctttgg cttcttcgtt gagaattttg gcaaattccc acgccaattt ttcacggctt
     9061 ttgtaatgac cgtcatagag agtgtcgatc attgtcatcg ggccgggtaa tgcccatttg
     9121 attggtttgt cggtatgcgc acgcaagaat ttggcatcgt ccacaaacac cgatttcggg
     9181 cgggaaactg cccccaccac gctcggcacg ctggcatcgt aacggttacg aatgcgcacg
     9241 atttcacgct tgctaaaatc caccccttcc aaatgctcga taaaggtggt cacaaagtgc
     9301 tggcgggtct gttcgccatc actaacaata tcaatccctg ccgcaatttg ttcggcaagg
     9361 gaaacaagga gggcatcacg tttggcttga agtagttcct cgccttcaaa tttccaaggt
     9421 gaccacagtt tttccggctc ggcaagccac gaaggttttg gtaggctgcc ggcggtagag
     9481 gttgggagaa gaatgttgct cattttgaat tttcctataa aaagtagggt gggcgtaagc
     9541 ccaccattgg ttatatctca ttttatggtg ggcttacgcc caccctacgt ttattcctcc
     9601 gtcgcccaag cctctaaaat cgcttggtaa cgtttaataa aatgctcttc ggtgtattta
     9661 ccctgtttga tcgccaactg ggtgcgttct tcacggtcat attccacttt ggtgacggaa
     9721 taatcttggt aagtcaggct gcctttatag acctgccctg cgaccgaatt ggcattgtaa
     9781 atttccggac ggtaaatttt ttggaacgct tccattgtgg caatcgtgct gattagctct
     9841 aagttagtgt aatcattgag taaatctgca ttctcatcaa agtagaacgc atagggtgca
     9901 acggattttg gcggcataaa gtaacgtact tttaagccca ttttcgcaaa ataggcatca
     9961 gttaatgaat aactatcttg cagatattcc acacctaaaa ttgggtgaac gttagtggtt
    10021 cttgtgtagg tacgggtggt tgccacgctt aaacagatca ccggtggttt tttatatttt
    10081 gcggtatatt caggcgatgc caataaatgc ttaaacagct tgccgtgtaa ctcgccatag
    10141 ccttccggca cgctaaattg cggtttgtct ttattgtgat ctaacaacaa tacgctgaaa
    10201 tcgtaatcac gcacaaaaga agagaagtta ttaccgataa tgccatcaat ggttttgccg
    10261 gttttgtagt cgataacata ggttttcagc cactcaatcg cagggaaaaa ctcgcctttg
    10321 ccttccacat caatatccag tgagacaata tccaatttca ccgaataacg atccgcattc
    10381 gggttatccc agttcgctaa atcgttaaaa cggttattga tcatcgcaat cgcattttgc
    10441 aggttctgtt tgcggttttc gccacgggca aggttggcaa agttggtggt taaacgggtg
    10501 ctttgctccg gttggtaatc ttcattaaat tcaatagtat gcacttggca tttaaaattt
    10561 gttgtcattt tattgtcccc tttatttttc agatagct
//
LOCUS       DANLRW010000087        10498 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.087, whole genome shotgun sequence.
ACCESSION   DANLRW010000087 DANLRW010000000
VERSION     DANLRW010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10498
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.087"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..1972
                     /locus_tag="PXA71_001903"
     CDS             <1..1972
                     /locus_tag="PXA71_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HDL5105987.1"
                     /translation="KKLNFSNWRDNLLPASILVGILLLLAIFINRQKDKIKQKLHQIN
                     NRLKIVATDSQWNTPLAIFWTLVLCLPSTLMFLAGFVAITYISFENPQEVWTWGLKMA
                     IYWLYFAFLVAMLRPHGIGHIHFNMPQKSNEIFRNILKRSVWIIALLLNTSIFTNLEM
                     GISYDMLGQTMTIFVLILMIWMIVPAFRQAISTYENVTTEEKKESKSILLTIVKLVLL
                     LAPIILIILIALGYYYTALVIIEHLVDSYFAIITWIIIRNILYRAFSISSRRLAYRRL
                     QEKREAAEAKTRAKAEQNDENPDGVELPFELKEDSIAVSEVKNQMLKLTDFVLWIGLF
                     VLLYWVWSDLITVALYLDGVTLWQQSVTTEAGIVMESITLLNLLTAILIIVVMVVLIR
                     NLSGLLEALIFSHFKLSQGTPYTITTLLTYLIIALGAIFAFGTLGMSWSKLQWLLTAL
                     SVGLGFGMQEIFANFVSGIIILFERPMRIGDTITIGTYSGTVSKIRIRATTLVDFDGK
                     EVIVPNKAFVTERLVNWALSSTATRIIVQVGVAYGSDLELVKRLLLQVAEENPKVLKD
                     PQPRAYFLTFGASTLDHELRAYVNDLSDRNPTIDALNTRIHQLFNEHNIDIAFNQLDV
                     YIKNNDTQDEIKVDSKRFEFERPNNITAKEKE"
     gene            1975..3057
                     /gene="aroC"
                     /locus_tag="PXA71_001904"
     CDS             1975..3057
                     /gene="aroC"
                     /locus_tag="PXA71_001904"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012072711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDL5105988.1"
                     /translation="MAGNSIGQLFKVTTFGESHGIALGCIVDGVPPNMALSEADLQPD
                     LDRRKPGTSRYTTPRREDDEVQILSGVFEGKTTGTSIGLIIKNGDQRSQDYGDIAEKF
                     RPGHADYTYQQKYGIRDYRGGGRSSARETAMRVAAGAIAKKYLREQFGIEVRGYLSQI
                     GNIKIDPKTVENIEQIDWHAVNSNPFFCPDPVAIEGFDALIRELKKEGDSVGAKLTVI
                     AERVPVGLGEPVFDRLDADLAHALMSINAVKAVEIGDGFAVVEQRGSQHRDEMTPQGF
                     LSNHAGGILGGISSGQPIIAHIALKPTSSITIPGRSVNKNNEAVEVITKGRHDPCVGI
                     RAVPIAEAMMAIVLLDHLLRFKAQCR"
     gene            3076..3903
                     /gene="mepA"
                     /locus_tag="PXA71_001905"
     CDS             3076..3903
                     /gene="mepA"
                     /locus_tag="PXA71_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HDL5105989.1"
                     /translation="MKLLKTLLVSSLAFTATALNATQWEKIKTPVQGKAQSIGGYSNG
                     CIIGAQPLALKGEGYQVIRSARNRYYGHPQLLDYLTHLGKKTKAAGVPTILIGDMGMP
                     AGGRFASGHASHQTGLDADIWFKFGPMDDETARNPAGLATIMVNRSTERVDDSLWNQH
                     HTNLVKLAATDPRVDRIFVNPAIKVKLCQTAGNDRAWLRKIRPWYGHDSHFHVRLTCP
                     ADAASCENQALVPAGDGCGEELYSWFEPKEASGTPKAKVLPTAPVQCQMILSEQGLN"
     gene            3976..5895
                     /locus_tag="PXA71_001906"
     CDS             3976..5895
                     /locus_tag="PXA71_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL5105990.1"
                     /translation="MRLFVAEKPSLARAIADVLPKPHTKGDGFIQCGEHDTVTWCIGH
                     LLEQAEPDVYDERFKMWRMEHLPIVPEQWKLIPKKETLKQFKVVEKLIKKADVLVNAG
                     DPDREGQLLVDEVFGYLNLSAERKSQIQRCLVSDLNPNAVSRAIEKLQKNSDFIPLAT
                     SALARARADWLYGINMTRAYTLQGRWAGYKGVLSVGRVQTPVLGLIVRRDLEIEHFVP
                     KDYFEVLAQIVVPETQERFKAQWQPSKACEDYQDEDGRVLSRPLAENVVKRITDQPAT
                     VTEYQNKIEKETAPLPYSLSVLQMEAAGRYGLSAQAVLDICQKLYETHKLITYPRSDN
                     RYLPTEHFNDRFKVMAAIAHHLPEYQQKPEVIDATIRNRCWNDKEVEAHHAIIPTARQ
                     GTVHLTENEKRVYQLIARQYLMQFCPDAEYRKSKIGLEIAGGSFVAQARNLVIAGWRA
                     LLGKEDSLDDAEPLLPIVKKGQILHCEKGEIVSKKTQPPRHFTDRSLLSAMTGIARFV
                     QDKELKKILRETDGLGTEATRAGIIELLFKRGFLIRKGKNIHSTEAGRILIQALPDSA
                     TQPDMTAHWEMQLNQISKKETSYQQFMFDLNQQLPHLLQSPNRQVLQNLAKITPLASG
                     NKPRYFKKRTQTAEN"
     gene            6001..6327
                     /gene="secG"
                     /locus_tag="PXA71_001907"
     CDS             6001..6327
                     /gene="secG"
                     /locus_tag="PXA71_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDL5105991.1"
                     /translation="MLINVLTIVYLVVAVLLIAFVLMQQGKGADAGASFGAGASATVF
                     GSAGSANFLSRTTALLATIFFAISLVIGNLSSHNVAPKSQFEDLSQVEQKQVEPVKIE
                     NSDIPQ"
     gene            6352..6437
                     /locus_tag="PXA71_001908"
     tRNA            6352..6437
                     /locus_tag="PXA71_001908"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6386..6388,aa:Leu,seq:gag)
     gene            6640..7881
                     /locus_tag="PXA71_001909"
     CDS             6640..7881
                     /locus_tag="PXA71_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5105992.1"
                     /translation="MARTTKALNKTQIENAKSKDKEYILSDGDGLNLRVKPLPKGSKI
                     WIFNYTNPQTKNRTNLTIGRYPLITLAEARTICDGYRSLIEKGIDPQEEKKRLQQEAE
                     NRVNDTFRNVAESYFNGIYKEKAKNPITREKNWIRLENHIFPYIGDKHVEEIKVKALV
                     DIYSKVADKSNTLKKLHQLVSAVMDHAITQGIIESHNCRLAVKNFYIKPSTPNPTIEL
                     EELPQLFTDLHNAKLSKQTYALVCWSFLTALRPNEAVNAEWKEIDFEKKLWNIPKEKM
                     KGKADKKRPHSVPLSSQALKILEMMKMHSNSSPFVFPGRSSNSKPMSNATVNSTLKRN
                     GYKDRLTAHGIRAFVKTFLSSRKVDRHVSESILSHLLEGGDDLENTYNRYDFLEERVP
                     VMQLLGDYCEQCGMNLELVRG"
     gene            complement(8040..9908)
                     /locus_tag="PXA71_001910"
     CDS             complement(8040..9908)
                     /locus_tag="PXA71_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDL5105993.1"
                     /translation="MFKKLLELRQQKAAIEAEMRSILTKADEEKRSTTEAEGAKFDEL
                     RSQAENLVKEIARYEAITDEQRNQPGQQVETANVKVSDDELRHWIKTGELRSLATNTN
                     GGADGGYSVIPELDKQVMKRLTDDSVMRQIANVVKLTQGKEYKKLVSAGGAAVNHIGE
                     GEARTETATPKMNEVTIAVHNIYAYPKTTQEILDFGGVDILGWLTEEISESFVETEET
                     DLTNGTGTKQAKGFLAYPRTTANDKTRPFGTLQKMEVQPATVIGWNSKGQPETLTPYP
                     PYSVNVQRTVNRQNWLTAYIPHSYDENVAETPHFDQWLNFVSDGKQDKAKNILAALYA
                     ILTNRYNWQVFFQVTGKGGSGKSVFAGIATLLAGEKNTASARLENFDDERKIAGLEDK
                     KLIICSEQTKYAGDGGGLKAITGGDMVRVDPKNKHPFNARIAAMIMIVNNDPCKWTER
                     NGGIDRRIVNFRFNKRPPENERDPYFMDKITLEIGGIIRKVLDTFPDPLEAKRALEEQ
                     KESLEALEIKKQSDPLTDFFEYLYTTENTDGLYIGTGNTLGHDKIRTHLYPAYLAFVK
                     AKNVLELGLNTFVVGIEQAVKQHGNKHDFTKRKTNKGQRTNVHFKNFDDFQSDILN"
     gene            complement(9919..10314)
                     /locus_tag="PXA71_001911"
     CDS             complement(9919..10314)
                     /locus_tag="PXA71_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5105994.1"
                     /translation="MISNEAIRQEVIDLLQGNIQGIQHFHNGRAVFTDVENELPAIAV
                     FIDEAEYSQLTLCDGECNAYLKIGIYLPMFSTENDLDLVAQKISDVMNQATFHSMDEC
                     VLAKYSYDYDANESAWKTATLHYNINYLN"
BASE COUNT         3095 a         2212 c         2189 g         3002 t
ORIGIN      
        1 aaaaaaactc aatttttcaa attggcggga taatttatta cctgcaagta ttttagtcgg
       61 aattttattg ctattagcca tctttattaa tcgccaaaaa gataaaatta aacaaaaatt
      121 acaccaaatt aataatcgac taaaaattgt cgccacagat agccaatgga acacccctct
      181 tgctattttt tggacattag tgctttgcct gccaagtaca ctaatgttct tagccggatt
      241 tgttgctatc acttatattt catttgaaaa tcctcaggaa gtctggactt ggggattaaa
      301 aatggcaatt tattggctgt attttgcctt tttagtggcg atgctacgcc cgcacggcat
      361 aggacatatt cactttaata tgccacaaaa aagtaatgaa atcttccgta atattttaaa
      421 acgttcggta tggatcattg ctttattact gaacacctct atttttacaa acttagagat
      481 gggaatatct tacgacatgc ttggacaaac aatgactatt tttgtcctta tattaatgat
      541 ttggatgatt gtaccggcat ttaggcaagc tatttctacc tatgagaatg tcacaacaga
      601 agagaaaaaa gaatctaaaa gtattttact cactattgtc aaattagtgc tactgcttgc
      661 ccctatcatt cttatcattc tgattgcatt gggctattac tatactgcac tggtgatcat
      721 tgagcattta gtagattctt attttgcgat cattacttgg attattattc gtaatattct
      781 ctatcgagca ttctctattt catcacgccg tctggcttac agacgtttac aagaaaaaag
      841 agaagcagct gaagccaaaa cacgagctaa agcagaacaa aatgatgaaa acccggacgg
      901 tgtcgagctt ccttttgagc taaaagaaga ctctattgcc gtaagcgaag tcaagaacca
      961 aatgttgaaa ttaactgatt ttgtgctttg gattggctta tttgtgctgc tttactgggt
     1021 ttggtcggac ttaattactg ttgcactcta cctagacggc gttaccttat ggcaacaaag
     1081 tgttacaaca gaagccggga ttgtaatgga atccattacc ctgctgaatt tactcactgc
     1141 tattctgatt attgtggtaa tggtggtact cattcggaac ttatccggtt tacttgaagc
     1201 cctgattttc tcgcacttca agttatcgca aggtacacca tacacaatta ccacactctt
     1261 aacctatttg attattgcgt taggggcaat ctttgcgttc ggtacattag ggatgtcttg
     1321 gagcaagctc caatggctac taactgcact ttctgtcggt ctgggttttg gtatgcaaga
     1381 gatctttgca aacttcgttt cagggattat catcttgttt gaacgtccaa tgcggattgg
     1441 cgacaccatt accatcggca cttacagcgg tacggtttcc aaaattcgta ttcgtgccac
     1501 aaccttagtc gattttgacg gcaaagaagt gattgtacca aacaaagcat tcgtaaccga
     1561 acgcttggtg aactgggcat taagcagcac cgcaacccgc attattgttc aagtcggcgt
     1621 ggcttacggg tctgatttag aattagtcaa acggctgtta ttacaagtgg cggaagaaaa
     1681 tccgaaagtc ttgaaagatc cacaaccaag ggcttatttc cttacctttg gtgcaagcac
     1741 tttagatcac gaattaagag cctatgtgaa cgatttatct gatcgtaacc caactattga
     1801 tgcactaaat acacgcatcc accagctctt taatgaacat aatattgata ttgcatttaa
     1861 ccaattagat gtttatatca aaaacaacga tacacaagat gaaattaaag tagattcaaa
     1921 acgctttgag tttgaacgac caaataacat aacagcaaaa gaaaaggaat aacaatggca
     1981 ggcaacagca tcggacaatt atttaaagtg accactttcg gcgaatctca cggtattgca
     2041 ttaggctgta tcgtagatgg cgtaccgccg aatatggctt taagcgaagc agatttacag
     2101 ccggatttag accgccgtaa acccggtact tcacgctaca ccacgcctcg ccgtgaagat
     2161 gatgaagtgc aaattttatc gggagtcttt gaaggcaaaa cgacgggaac aagcattggt
     2221 ttaatcatta aaaacggtga ccaacgctca caagactatg gcgacattgc cgaaaaattc
     2281 cgcccggggc acgcagatta tacctatcag caaaaatacg gcattcgaga ttaccgtggc
     2341 ggtgggcgtt cttctgctcg ggaaaccgca atgcgggttg ccgccggggc gattgccaaa
     2401 aaatatttgc gtgagcaatt tggcattgaa gtgcgaggct acctctcaca aatcggcaat
     2461 atcaaaattg acccgaaaac cgttgaaaat attgaacaaa ttgattggca cgcagtcaat
     2521 agtaatcctt tcttctgccc cgatcccgtt gcgattgaag gctttgatgc cttaattcgt
     2581 gagctgaaaa aagagggcga ttcggtgggg gcaaaattaa ccgtgattgc agagcgtgta
     2641 cctgtagggt taggcgaacc tgtgtttgac cgcctagatg ccgaccttgc ccacgcctta
     2701 atgtcgatca acgccgtgaa agcggtggaa attggcgatg gttttgcagt tgtggaacaa
     2761 cgtggtagcc agcaccgaga tgagatgacg ccgcaaggct ttctctctaa tcacgccggc
     2821 ggaattttag gtggtattag ctccggtcag ccgattatcg ctcatattgc gttaaagccg
     2881 acctcaagca ttactattcc cggcagaagc gtgaacaaaa acaacgaagc cgttgaagtg
     2941 atcactaaag gcagacacga cccctgtgta ggtattcgtg ctgtgccgat tgcagaagcg
     3001 atgatggcga ttgtactact cgaccatctg ttaagattta aggctcaatg ccgttaaaca
     3061 cataaaattg gaaaaatgaa attattaaaa acacttttag tctcaagcct tgcttttaca
     3121 gctaccgcac tgaatgcaac gcaatgggag aaaatcaaaa ctccggttca aggaaaagca
     3181 caatctatcg gcggttatag taacggctgt attattgggg cacagcccct tgcattaaaa
     3241 ggcgaaggct accaagtgat ccgctcggct cgtaaccgct attacggaca cccacaactg
     3301 ctcgattatc tcactcactt aggcaaaaaa accaaagctg ccggtgtgcc gaccatttta
     3361 atcggcgata tgggaatgcc tgccggtggg cgttttgcct ccggtcacgc ctcccatcaa
     3421 accgggctgg atgctgatat ttggtttaag ttcggaccga tggacgatga aaccgcccgc
     3481 aatccagcag ggcttgccac cattatggta aaccgtagta ccgagcgggt tgatgattca
     3541 ctctggaatc aacaccatac taatttagta aaacttgctg caaccgatcc tcgagtggat
     3601 cgcatttttg tcaatcctgc cattaaagtg aaactctgcc aaaccgcagg caatgatcgt
     3661 gcttggttac gcaaaattcg cccgtggtac ggacacgact cccatttcca cgtccgttta
     3721 acctgcccgg ctgatgccgc aagttgtgaa aatcaagccc ttgtgcctgc cggtgacggc
     3781 tgtggtgaag agctttactc gtggtttgag ccgaaagaag cctccggcac accaaaagcc
     3841 aaagtgctac ccacagcgcc tgttcaatgt cagatgattt tatctgaaca aggcttgaat
     3901 taattgcaaa ataacaacct tttttgaccg cttgtcagcc cacaagcggt tcattttctt
     3961 aaataattta cgattatgcg tttatttgtt gccgaaaaac ccagccttgc ccgagcgatt
     4021 gccgatgtgt taccaaaacc ccataccaaa ggagatggct ttatccaatg cggcgaacac
     4081 gacactgtta cttggtgtat cggtcattta ttggaacagg ctgaacccga tgtctatgat
     4141 gagcgtttca aaatgtggcg aatggaacat ttgccgattg tgcctgaaca atggaaattg
     4201 attcccaaaa aagagacgct caagcagttt aaagtggtgg aaaagctgat taaaaaagcc
     4261 gatgttttag tcaatgccgg agacccggat cgagaagggc agctgttggt ggacgaagtt
     4321 tttggctatt tgaatttatc tgctgaacgc aaaagccaaa ttcagcgttg tttggtaagc
     4381 gatctcaacc cgaatgcggt gagccgagcc attgaaaaat tgcaaaaaaa cagcgatttt
     4441 ataccgcttg caacctctgc tctcgcccga gccagagcgg attggctgta tggtatcaat
     4501 atgacccgag cctataccct acaggggcgt tgggcaggct ataaaggcgt gttatcagtc
     4561 ggacgtgtgc aaacgccggt attagggctg attgttcgcc gagatctgga gatcgagcat
     4621 ttcgtgccaa aggattattt tgaggtgttg gcacagattg tcgtgccgga aacccaagag
     4681 cgatttaagg cgcagtggca accgagcaaa gcctgtgaag attatcaaga tgaagatggg
     4741 cgggtgctgt ctcgtccatt ggcagaaaat gtggtaaaac ggattaccga ccagccggca
     4801 accgtcaccg aatatcaaaa taaaattgaa aaagaaactg caccgctgcc ttattctctt
     4861 tcggtattac aaatggaagc cgccggcaga tatgggctat ccgcccaagc ggtgttggat
     4921 atttgccaaa agctgtatga aacccataaa ctaattacct accctcgttc tgataatcgg
     4981 tatttgccga ccgaacattt caacgacaga tttaaagtga tggcggcgat tgctcatcat
     5041 ttacctgaat atcaacaaaa accggaagtg attgatgcca ctattcgcaa tcgttgctgg
     5101 aatgataaag aggtggaagc ccaccacgcc attattccca ctgcacggca agggacggta
     5161 catttaaccg aaaatgaaaa aagagtttat caactcattg cccgccaata tctaatgcaa
     5221 ttctgccctg atgcggaata tcgcaaaagt aaaatcgggc ttgaaattgc aggtggtagt
     5281 tttgtcgctc aagcacgcaa ccttgtaatt gccggctggc gagcgttact gggtaaagaa
     5341 gatagccttg acgatgcaga gccactacta ccgattgtca aaaaagggca aatcctccat
     5401 tgtgaaaaag gggaaattgt cagcaaaaaa acacaaccgc cccgccactt tactgatcgc
     5461 agtttgcttt cagcaatgac cgggatcgcc cgttttgtac aagataaaga attgaaaaaa
     5521 atcttgcgtg aaaccgatgg tttaggcacg gaggcaaccc gagccggtat tatcgaattg
     5581 ctgtttaaac gtggtttttt aatccgtaaa gggaaaaata tccacagtac cgaagccggc
     5641 agaatattga ttcaagcact tcccgactct gctacccagc cggatatgac cgctcattgg
     5701 gaaatgcagc tgaatcaaat cagcaaaaaa gagaccagct atcagcaatt tatgtttgat
     5761 ctaaaccaac agctcccaca tttattacaa agcccaaacc gccaagtgtt gcaaaattta
     5821 gcgaaaatca caccgcttgc aagcggcaat aaacctcgtt attttaaaaa gcgaacacaa
     5881 actgctgaaa attaaatcaa gcaggtaaaa attactgttt agcacttgtc aaacgggcgt
     5941 aaattctata ttatgcacgc cattgcaaat ttcgcataaa gaatacaaga gaataaatta
     6001 atgttaatta atgtactcac tattgtttat cttgtagttg ccgtattact gatcgcattt
     6061 gtattaatgc aacaaggtaa aggcgctgat gcaggtgctt ctttcggggc gggtgcttca
     6121 gcaacagttt tcggctcagc aggatcagca aattttttat caagaacaac tgctctactt
     6181 gcaacgattt tcttcgcaat tagtttagtt atcggtaatt taagctcaca caatgtagca
     6241 ccgaaaagcc aatttgaaga cttaagccaa gttgaacaaa agcaagtaga acctgtaaaa
     6301 atagaaaata gcgatatccc tcaataatcg cttaacatta aaaagaataa agctctggtg
     6361 gtggaattgg tagacacgcc atcttgaggg ggtggtggac acagtccgtg cgagttcaag
     6421 tctcgcccag agcaccattc aactaaattt ggctcaacgg agctaaacta aaaaagcctt
     6481 agaaagcctg taaaatcaac atttacaggc ttttttacta tcttaactca acggctctaa
     6541 acgtttccta tcacaaattt tagttacacg tttagttaca cgttttaaat cgtgttacta
     6601 tactttcaat aatcgtgtaa cacttcgtag gtttaattta tggctagaac aactaaagca
     6661 ttaaataaaa ctcaaataga aaatgccaaa tcaaaggata aagaatatat tttatccgat
     6721 ggcgatggat taaatcttag agttaaacct ctccctaaag gctctaaaat ttggattttt
     6781 aactacacta acccacaaac taaaaacaga acaaatttaa ctattgggcg ttacccctta
     6841 attacacttg cggaagctcg cactatatgt gatggctacc gctcgttaat agagaaaggc
     6901 atagatccac aggaagaaaa aaagcggctg caacaagaag cagaaaatcg agtaaatgat
     6961 actttccgga atgtggccga aagctatttc aatggtattt ataaagagaa agcaaaaaat
     7021 ccgattactc gtgaaaagaa ttggataagg ttagaaaatc atattttccc ctatatcggg
     7081 gataaacacg ttgaagaaat caaagtaaaa gcccttgttg atatttattc taaagtggca
     7141 gataaaagca acacattaaa aaaactgcat cagcttgtat ctgctgtaat ggatcacgcc
     7201 attacgcaag gcattataga aagccataac tgccgattag cagttaaaaa cttttatatc
     7261 aagccatcta cgccaaatcc cactattgag cttgaagaat taccgcagtt atttactgat
     7321 ttacataatg cgaagttatc aaagcaaact tacgcccttg tttgttggtc gttcttgact
     7381 gctctacgcc caaatgaagc cgttaatgct gaatggaaag aaatagactt tgagaaaaag
     7441 ctatggaata tccctaaaga gaagatgaaa ggaaaagcag ataaaaaacg ccctcactct
     7501 gtgccgttat cctcccaagc gttaaagata ttagagatga tgaaaatgca ctctaattct
     7561 agcccttttg tttttccagg tcgttcatca aatagtaaac caatgagcaa cgcaacggta
     7621 aattcaacat taaaaaggaa tggatataaa gatagactaa ccgcacacgg tattcgggca
     7681 tttgtgaaaa catttctatc ttctcgcaaa gtagatcgcc acgtttccga aagtatatta
     7741 tcccatttat tagaaggtgg agatgattta gaaaacacat acaaccgata tgatttttta
     7801 gaagagcgtg tgccagtaat gcagctttta ggtgattatt gcgaacagtg cggaatgaat
     7861 ttagagttag ttcggggtta gggaggtaaa atatatgatt ttagtcgtca cgtcatcact
     7921 tttcccactt tcccctttaa aatcaaatag ttaagtggtg atgactggtt ttaaagtcat
     7981 cattaagtca tcacaaaaag gtgatgacct agaaaaaaag aggggtttcc ccctctttgc
     8041 taattcaaaa tatcactttg aaagtcatca aaatttttga aatgaacgtt tgttcgttgc
     8101 cctttattcg tctttcgttt tgtgaaatcg tgcttattgc cgtgttgctt tactgcttgc
     8161 tcaataccta ctacaaaagt atttaagcct agttctagca cattcttagc cttaacaaag
     8221 gctaaatatg ccggataaag gtgcgttctt attttgtcgt gtccaagcgt gttgccagtt
     8281 ccgatataaa gcccgtctgt attttctgtt gtatatagat actcgaaaaa atccgttaat
     8341 gggtcagact gctttttaat ctccaacgcc tctaggctct ctttttgctc ctctaaggct
     8401 cttttagctt cgagtgggtc agggaaggta tcaagcactt tacggataat gccccctatc
     8461 tctaatgtaa ttttatccat aaaatacgga tcacgttcat tttcaggcgg tcttttatta
     8521 aaacggaaat tgacaatccg cctatctata ccgccattcc gttctgtcca tttacaaggg
     8581 tcgttattga cgatcataat cattgccgca attcttgcgt taaatgggtg cttgttcttc
     8641 ggatcgactc gcaccatatc accgccagta atcgctttca atccgccacc atctccagcg
     8701 tatttcgttt gctcggaaca gataatcagc tttttatctt ccagccctgc gattttgcgt
     8761 tcatcatcaa agttttctag ccttgctgaa gctgtgttct tttctccagc taatagtgtc
     8821 gcaatgccag caaataccga tttaccgctt ccgcctttcc ctgttacttg gaagaatact
     8881 tgccagttgt agcggtttgt taaaatcgca tagagagcgg ctagaatgtt cttcgccttg
     8941 tcttgcttgc cgtctgatac aaagttaagc cattgatcaa agtgtggtgt ttcggctacg
     9001 ttctcgtcat agctatgtgg aatataagcc gttagccagt tttggcggtt aacggttctt
     9061 tgaacattta ccgaataagg tgggtaaggg gttaaagttt cgggttgccc cttgctattc
     9121 caaccaatca ccgtagccgg ttgtacttcc attttttgaa gcgtgccgaa tggtcgggtt
     9181 ttatcgttgg ctgtcgtgcg tggataagct aagaagcctt tagcttgttt tgtgcctgta
     9241 ccgttggtta aatcggtttc ttcagtttcg acaaaggatt ctgaaatttc ttcagtcagc
     9301 cagcctagaa tatctacacc accaaagtct aaaatctctt gcgtggtttt cgggtaagcg
     9361 taaatattat gaacggcaat cgttacttca ttcattttcg gggtggcggt ttcggtgcgt
     9421 gcttcgcctt caccgatatg atttaccgct gcaccgccag ccgatactaa ttttttatat
     9481 tctttgcctt gggtcagttt caccacgtta gcaatttgtc gcataacaga atcatctgtt
     9541 aggcgtttca ttacttgctt gtcaagttcc ggaatcactg aatagccacc gtctgcccct
     9601 ccatttgtat tcgtagcaag cgaacgcaat tcgcctgttt taatccagtg gcgaagctcg
     9661 tcatcagata ctttcacatt tgcggtttca acctgttgcc ccggttggtt acgctgttca
     9721 tcagtaatcg cttcataacg tgcgatttct tttactaaat tttcagcttg tgagcggagt
     9781 tcatcaaact tagccccttc tgcttcagtt gttgagcgtt tttcttcgtc tgctttggtt
     9841 aaaattgaac gcatttctgc ttcaatagcc gctttttgtt ggcggagttc taaaagtttt
     9901 ttaaacattg ccttatcctt aattcaaata attgatattg tagtgaagcg ttgctgtttt
     9961 ccacgctgat tcgttagcat cataatcata gctatactta gccagcacac attcgtccat
    10021 actgtggaat gtggcttgat tcatcacatc actgattttt tgagccacta aatctaggtc
    10081 gttttcggtt gaaaacattg gtaagtaaat gccgattttc aaataggcgt tgcattcgcc
    10141 atcgcaaagc gtgagttggc tatattccgc ttcatcaatg aatacggcga tagccggtaa
    10201 ttcattttct acatcggtga atacggctcg gccgttatgg aaatgttgaa tgccttgaat
    10261 gttaccttgt aataagtcga taacttcttg gcggattgct tcgttagaaa tcataaaaaa
    10321 gtcctcttaa ttaagaaggc tacaattagc cacagaacaa tataggcata atttcaacgg
    10381 agtaaatagg gtaaaattta atcgtttagc tacgtttgaa cacgttaaga ggataatttt
    10441 taaatgatta ttttttattc aacaaaagac aaaatggaag gaaataaacg aataattt
//
LOCUS       DANLRW010000088        10486 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.088, whole genome shotgun sequence.
ACCESSION   DANLRW010000088 DANLRW010000000
VERSION     DANLRW010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 10486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10486
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.088"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..973)
                     /locus_tag="PXA71_001912"
     CDS             complement(<1..973)
                     /locus_tag="PXA71_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel/cobalt transporter"
                     /protein_id="HDL5105995.1"
                     /translation="MRLKATYWGMIVIGFLSLFALYQLYPMILFKVMEWQKNFNLQLS
                     ASLNELAENQSKAGITLVFISFLYGVFHAVGPGHGKFILSSYLSFEKTKLNQAMKITF
                     ASALVQGLVAISLVTVIVVIFTLSRQYFNLTLKWVERGSFGLMILFGIYWCYQVYRTV
                     NRARKPIIKSIRISQKKAGKLPLVTQKGHIHTENCSCRHKHLPTSNEMQQVRDWKAQL
                     MLVLSIGSRPCSGAILVLFLSYTLNLYAWGVISALAMAVGTGLTLSLFAYLVIIARNK
                     AVKVSQWYFSAQINRNIVWILKFTLGLALILFGMVLFHSSFIDAGTGV"
     gene            complement(964..1602)
                     /locus_tag="PXA71_001913"
     CDS             complement(964..1602)
                     /locus_tag="PXA71_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HDL5105996.1"
                     /translation="MKFIKTIITLIALYSMPVFSHPHSFVDLKTNVIVEGSMLKSFQM
                     EWMLDEIASSELIYEVKNSQDKEKTQQNITAEMVQTALQNHYFSTLYDSQNQPIKFTT
                     KPTATRFEIKNNRVIFYITFHLAKPHELKQSKVRFYTYEPSYYIAMEYNRPADVNTSN
                     ASCKATLVQPQVDSKLRLYASGLDKNQSLDMPENGDYSLGAQFAQKVEIICD"
     gene            complement(1663..2041)
                     /gene="rnpB"
                     /locus_tag="PXA71_001914"
     ncRNA           complement(1663..2041)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="PXA71_001914"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(2170..2457)
                     /gene="rplY"
                     /locus_tag="PXA71_001915"
     CDS             complement(2170..2457)
                     /gene="rplY"
                     /locus_tag="PXA71_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005625668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HDL5105997.1"
                     /translation="MSFKFEAEVRSAQGKGASRRLRHNGQVPAIIYGGNAEPVSIILD
                     HDKVNNAQVHDSFYNEVLTIVVAGKEEQVKVQAIQRHPTKPKLVHLDFKRA"
     gene            complement(2609..3877)
                     /locus_tag="PXA71_001916"
     CDS             complement(2609..3877)
                     /locus_tag="PXA71_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme"
                     /protein_id="HDL5105998.1"
                     /translation="MSDLKQQALDFHEFPIPGKISVTPTKALDTQHDLALAYSPGVAE
                     PCLAIEKDPSASYRYTARGNLVAVISNGTAVLGLGNIGALASKPVMEGKGVLFKKFAG
                     IDVFDIEINETDPEKLVEIIASLEPTFGGINLEDIKAPECFYVEQKLRERMGIPVFHD
                     DQHGTAIITGAAVINGLQVVGKAISEVRLVVNGAGASAIACTNLLRSLGVKKENITMC
                     DSKGVIFQGRGDKMDETKQFYAIEDNGWRTLADAVANADVFLGCSKGGALTQEMVKTM
                     AKDLLILALANPVPEITPAEAKAVRPDAIVCTGRSDFKNQVNNVLCFPFLFRGALDVG
                     AKTINEEMKMAAAHAIAELAKEPVPFEVISTYGELSFGPEYIIPTPFDPRLIVNVSIG
                     VAKAAIQSGVATRPITDWEAYAEQLKKLVA"
     gene            complement(4034..4945)
                     /locus_tag="PXA71_001917"
     CDS             complement(4034..4945)
                     /locus_tag="PXA71_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RimK family alpha-L-glutamate ligase"
                     /protein_id="HDL5105999.1"
                     /translation="MKWLMLCREPRLYSCCRIKAACEAKGIELDILDQNRMLLGLENG
                     EFKIYYQAGESYDNNRPEPVLLPNYDGILPRFGTGSTEMGCSVLRHFEAKGIPVLNHS
                     AAFALARDKWRTLQKLAKHNLPVPNTNFAGHLVSVKSQLNQFAFPLISKVLNGSQGNG
                     VMLFEGKNNAEAVLATFRQVNEPYLCQQFVGDAKGQDIRAFVIGNEVVAAMSRTSVTG
                     DFRANIHQGGTAQPIELTQMERALAIKATKTIGLDIAGVDFLRTEKGVVILEVNASPG
                     FEGIERVNDVDIASEMVSYFINKMKNA"
     gene            complement(4942..5661)
                     /gene="nfsA"
                     /locus_tag="PXA71_001918"
     CDS             complement(4942..5661)
                     /gene="nfsA"
                     /locus_tag="PXA71_001918"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HDL5106000.1"
                     /translation="MQSKPTLETILSHRSIRKFTEQPISEEIFQILIEAGKAASSSNH
                     LQCVTVIRVTDRQIRETLKAVSGMQYVVDCAEFLVFCIDFNKHKQLVPESQLEWAEVS
                     LIGAVDTGILAQNVFLAAESLGLGAVYIGALRNDIERVSKALNLPEYCVPLVGMCLGY
                     PAQEPAIKPRLPNSLVCYNNQYQDFDWTEFAKYNENLTAYYQARIGEPQQWQAAIHKT
                     LDKPVRPHILPFFNQKGLLKK"
     gene            complement(5673..6458)
                     /gene="mtgA"
                     /locus_tag="PXA71_001919"
     CDS             complement(5673..6458)
                     /gene="mtgA"
                     /locus_tag="PXA71_001919"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
                     /protein_id="HDL5106001.1"
                     /translation="MEQSMAKRNKRFLSSLLKKIGLFFIPRKIKSKLGWLWFGSSRLL
                     TFGGTFFLIPILIFSVLPVPYSAYMVQKKVENLVQGKSYPIKKEWVSLNEISWQMQMA
                     VIASEDQKFESHFGIDLQAIETALKLNAKSKKVRGGSTISQQTVKNMFLWHGQSWLRK
                     GIEVPLTLLVENVWSKDRILEVYLNIAEFGNGIFGVEAAAKHFFKKSAKQLTLQESAL
                     LAASLPNPLVFRVDKPGPSMRKRQAWIMRQVSLLDGKNYLDKL"
     gene            complement(6433..6753)
                     /gene="trpR"
                     /locus_tag="PXA71_001920"
     CDS             complement(6433..6753)
                     /gene="trpR"
                     /locus_tag="PXA71_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HDL5106002.1"
                     /translation="MKTLYNQRDPNEWTQFLALLEQAVAEDKLEPFFSMFLTADERGS
                     LGLRLQIVQALLKGEDSQREIQQNLNTSAATITRGSNMLKTLDQDFLQWLNGKVNGTV
                     NGKA"
     gene            complement(6833..7474)
                     /gene="lolA"
                     /locus_tag="PXA71_001921"
     CDS             complement(6833..7474)
                     /gene="lolA"
                     /locus_tag="PXA71_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005600572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HDL5106003.1"
                     /translation="MKTLFKKSVFGLALFGLANVALADAQSVAELQRRLEQVSQYSAD
                     FDQTVRSSKGKQIQQGKGKFQVKRPNLFRMDTKSPQENLIVSDGKDLWFYDPFVSQVT
                     VNTVQDAVNNTPFVLLTSGDKSHWDQYDVSQSADTFVLKPKSKKSNLKQFDVRIDQSG
                     LLKGFSTIERDGQSNLYVLRNITTGGVSSDLFKFSVPKGAELDDQRGGKKSKK"
     gene            complement(7585..10443)
                     /gene="polA"
                     /locus_tag="PXA71_001922"
     CDS             complement(7585..10443)
                     /gene="polA"
                     /locus_tag="PXA71_001922"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005611716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDL5106004.1"
                     /translation="MATIAKNPLVLVDGSSYLYRAFHAFPPLTNRLGEPTGAMYGVLN
                     MLKSLISQVNPSHIAVVFDAKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRIIKAL
                     GIPLISIEGVEADDVIGTLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLL
                     DREGVIEKYGIPPELIIDFLALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANL
                     DQIATLSFRGAKNFAPKLEAEKANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELA
                     QLFEHYEFKRWLNEVNQNANPVTQTSAEKVPNNYQVTQAVRNEENVANVVEIDRSKYE
                     TVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENGEACYIPLGHKQ
                     KAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKKIGQNIKYDL
                     TIFANYGIELQGVAFDTMIESYTQNSTGRHNMDDLAARYLGHKTIPFEELAGKGKNQL
                     TFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVGVLSRIER
                     NGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLGLPVLK
                     KTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGRVHT
                     SYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIMA
                     HLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGL
                     SNQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSG
                     NAILRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDNDEIKMIMQVHDELVFEVKA
                     DKIDHYSQLIKTEMEKAISLKVPLIAEVGVGENWDEAH"
BASE COUNT         2991 a         2386 c         1903 g         3206 t
ORIGIN      
        1 aaacgcctgt accagcatca atgaaactac tgtgaaataa taccattcca aatagaatta
       61 atgcgagtcc aagtgtaaat tttaatatcc aaacgatatt tcgattaatt tgagctgaaa
      121 aataccattg gctaacctta actgccttat ttctcgcaat gataacaaga taagcaaata
      181 agcttaaagt cagccctgtt cctactgcca tagctaatgc tgaaataacc ccccaagcat
      241 agagattgag cgtataagaa agaaataaaa caagaatagc gccagagcaa ggtcttgagc
      301 caatacttaa taccaacatc agctgtgctt tccaatctct cacttgttgc atttcatttg
      361 aagtcggtaa atgtttatgc ctacagctac aattttcggt atgaatatgc cctttctgcg
      421 tgacaagcgg taattttcca gctttttttt gcgaaatacg aatggattta atgataggct
      481 ttcgcgctct gttcaccgtt cgatacacct ggtaacacca gtaaatgccg aacaagatca
      541 tcaaaccaaa gctcccccgc tcaacccatt ttagggttaa attaaaatat tggcgagaga
      601 gagtaaaaat caccacaatc accgtcacca atgaaattgc cactaagccc tgcaccaatg
      661 ctgaggcaaa agtgattttc atcgcctgat ttaattttgt tttttcaaaa gaaagataac
      721 tgctcagaat aaattttccg tgaccaggcc caactgcgtg aaatactcca tataaaaaac
      781 taataaatac taaggtaata ccggctttac tttgattttc agctaattca ttgagcgaag
      841 cggaaagctg taaattaaag tttttttgcc attccatcac tttaaacaat atcattggat
      901 aaagctgata aagagcaaat aggctcaaaa atcctatcac tatcattccc caatatgttg
      961 cttttaatcg catataatct ccactttttg agcaaattgg gcaccaagag agtaatctcc
     1021 attttcaggc atatccagtg attggttttt atccaaaccg gaagcatata agcgtaactt
     1081 actatctact tgaggttgca ccaatgttgc tttacaactt gcattactgg tattgacatc
     1141 agcagggcga ttatattcca tcgcaatata ataactcggt tcataagtat agaatctcac
     1201 tttactctgc tttaattcgt gaggtttagc taaatgaaaa gtaatataaa aaatcactct
     1261 gttattcttg atttcaaagc gagtcgctgt gggctttgtc gtaaatttta tcggctgatt
     1321 ttgactatca tataaggtgc taaaataatg attttgcaat gcggtttgca ccatttctgc
     1381 agtgatattc tgctgagttt tttctttatc ttggctattt ttcacttcat aaattaactc
     1441 agaagaagca atttcatcta gcatccattc catttggaaa gatttcaaca ttgagccttc
     1501 cacaataaca ttcgttttca aatcaacaaa tgaatgtggg tgagaaaaaa ctggcattga
     1561 atataatgca attaacgtga taatcgtctt aataaatttc atatttactt tcactataaa
     1621 ataaaaaagc gaacaagttc cccctgttcg catttcaaga atttagtgag ttggtcgata
     1681 agccgagttc tgtcgtggac aatcattcct ctagacgtac atttacacat acgctcaagc
     1741 aacctacccg aactctcagc gggccaccga ttgagttcct atttggtctt gctacgagtg
     1801 gagtttaccc tgctgtggaa tgttaccacc cacacggtgc gctcttaccg caccctttca
     1861 cccttaccga caaagccggc ggtctgctct ctgttgcact ggtcgtaggc tcacgccccc
     1921 cggacgttat ccggcactct gccctgtgta gctcggactt tcctctcgtt tacttgtccc
     1981 ccagtttacg ttttcacgaa tttagaggct tcaataaacc agcgattgcc taaccaactc
     2041 agcactagag tataatgctt tcgcaaaaaa ttgcaaggaa ataaccgctt gtagttatta
     2101 tggcaaaata aaaaaggatt aagttcattt aaaaacttaa tcctcttcgc tttaattcac
     2161 tcgtaaaaat tacgcacgtt tgaagtctaa gtgaactaat tttggtttag ttgggtggcg
     2221 ttgaattgct tgtactttta cttgctcttc tttacctgca acaacgatag ttaatacttc
     2281 gttatagaat gaatcgtgaa cttgtgcgtt gttcacttta tcgtgatcta aaatgattga
     2341 tacaggctct gcattaccac cgtagatgat tgcaggaact tgaccattgt gacgcaggcg
     2401 gcggctcgca cccttacctt gcgcagaacg aacttcagct tcaaatttga atgacatagt
     2461 tttattctct taaataaaat ggggaaatcc ccgtgaatag aaaaaacagc aggcgaccca
     2521 gctgtttccg aaaaaatatc ggcatatccg tctcgatatg ccaactacgt attttactga
     2581 agttgcagaa aaatgcaatg taaaaatatt aagcaaccag ttttttcaac tgctctgcat
     2641 aagcttccca atctgtaatt ggtcgagttg ctacacctga ttgaattgct gcttttgcta
     2701 caccaatcga gacattcacg atcaaacgtg gatcaaatgg cgttggaata atatattccg
     2761 ggccaaacga taattcgcca taagttgaaa taacttcaaa cggcacaggt tctttagcca
     2821 actctgcaat cgcatgggct gctgccattt tcatttcttc attaatggtt tttgccccaa
     2881 catctaatgc tccacggaat aagaacggga aacaaagcac attattcact tggtttttaa
     2941 agtctgaacg accggtacat acaatcgcat ctggacggac agccttcgct tcagcaggtg
     3001 taatttccgg cacagggttc gctaaagcaa gaattaatag atcttttgcc attgttttaa
     3061 ccatttcttg cgttaaagct ccgccttttg aacaacctaa gaaaacatct gcattcgcaa
     3121 cggcatctgc caatgttctc caaccattat cttctattgc atagaattgt ttggtttcat
     3181 ccatcttatc accacgacct tggaaaataa cgcccttaga atcgcacatt gtgatatttt
     3241 cttttttcac acctaatgaa cggagtaagt tagtacacgc aatcgctgat gctccagcac
     3301 cgtttaccac taaacgtact tctgaaattg ctttacctac cacttgtaat ccgttaatca
     3361 ccgccgcacc ggtaataatt gccgtaccgt gttgatcatc gtggaacaca gggattccca
     3421 tacgttcacg taatttttgc tctacataaa aacattcagg tgctttaata tcttccagat
     3481 taataccacc aaaagtcggt tctaacgatg caataatctc cactaatttc tccggatcag
     3541 tttcattaat ttcaatatca aacacatcaa ttccggcaaa tttcttaaat agaacacctt
     3601 tgccttccat cacaggctta cttgctaaag caccaatatt gcctaagcct aacactgctg
     3661 taccattaga aattactgca actaagttac ctcgtgccgt ataacgataa gaagctgaag
     3721 gatctttttc aatcgctaag caaggctcag caaccccagg agagtacgct aaagctaaat
     3781 cgtgctgagt atctaatgct ttagtaggag taacggaaat ttttccgggg attgggaact
     3841 cgtgaaaatc aagcgcctgt tgttttaaat cgctcatttt agaaacctta taatctataa
     3901 aaataaaagt aatcaataat agccaaagag tagccatttt accctaaatt ttttcgcatt
     3961 tttatggctt tgctctcatt ttttatgata tttacaaaaa ataatacaaa aacgtccgct
     4021 tgttttactc aaatcaagca ttcttcatct tattgataaa ataagaaacc atttcagaag
     4081 ctatatcaac atcatttact ctctctatgc cttcaaatcc tgggctggca ttgacttcta
     4141 aaataactac gcctttctct gtccgcagaa aatcaacgcc tgcaatatca agccctatcg
     4201 ttttagttgc tttaattgct aacgcacgtt ccatctgagt taattcaatc ggttgagccg
     4261 ttccaccttg atgaatattg gctctaaaat cgcctgttac gctggttcgg ctcatggcag
     4321 caaccacttc attgccaatc acaaacgccc gaatatcttg ccctttagcg tcgcccacaa
     4381 attgttggca tagataaggc tcatttactt gcctaaaggt cgctaacacg gcctcggcat
     4441 tatttttgcc ttcaaatagc attacgccat tcccctgtga accatttagc acttttgaaa
     4501 taagtggaaa agcaaattga ttgagttgtg atttcacaga aaccaaatgc cctgcaaaat
     4561 tcgtattagg aaccggcaaa ttgtgtttgg ctaatttttg taatgttcgc catttgtctc
     4621 gggctaacgc aaatgccgct gaatgattta gaacaggaat acctttcgcc tcaaaatggc
     4681 gtaacaccga acagcccatt tcggtactgc ctgtgccaaa acggggtaaa atgccgtcat
     4741 aattcggcaa caataccggc tccggacggt tgttatcata gctctcgcca gcttgatagt
     4801 agatcttaaa ttcgccattt tctaacccga gtagcattct attctggtct aaaatatcca
     4861 gctcaatccc ctttgcctca caagcggctt ttattcgaca gcagctatat aaacgaggct
     4921 ctcgacatag cattagccac ttcatttttt cagcaatcct ttctgattga aaaacggcaa
     4981 aatatgcgga cgaacaggct tatccaatgt tttatgaata gctgcttgcc attgttgtgg
     5041 ctcgccgatt ctggcttggt agtaagcggt caaattttca ttatattttg caaattcagt
     5101 ccaatcaaaa tcctgatatt gattgttata acaaaccaaa ctattcggca aacgaggttt
     5161 tattgccggc tcttgtgccg gataccccaa acacataccc accagtggaa cacaatattc
     5221 cggcaagtta agggctttag aaacccgctc aatatcatta cgcaatgctc caatatacac
     5281 cgctcccagc cctagtgatt cggcggctaa aaatacattc tgggccaaaa taccggtatc
     5341 taccgcccca atcaacgaca cctccgccca ttccaactgc gattcaggga caagttgttt
     5401 gtgtttatta aaatcaatgc agaacaccaa aaattcagca caatctacta catattgcat
     5461 acctgaaacg gcttttaatg tttctcgaat ctgccgatcg gttacacgaa tcaccgtcac
     5521 acattgcaga tgatttgaac ttgaagccgc tttacctgcc tcaattaaga tttggaaaat
     5581 ctcttcagaa ataggctgtt cggtaaattt acgaatagaa cggtgagata aaatcgtctc
     5641 aagagtcggt ttactttgca tatttttctc gtctaaagtt tatctaaata atttttgcca
     5701 tcaagcaaac ttacttgtcg cataatccac gcttggcgtt ttcgcatact cgggccgggt
     5761 ttatctaccc taaacaccaa cgggttaggc aaagaggctg ccaatagtgc ggattcttgc
     5821 aaggttagct gtttggctga ttttttgaaa aaatgctttg cggctgcttc caccccgaaa
     5881 atgccgttac caaattccgc aatattgagg tacacctcta aaatccgatc cttactccac
     5941 acattttcga ctaacagggt taaaggcact tcaatccctt tgcgtaacca gctttgcccg
     6001 tgccacaaaa acatattttt taccgtttgt tgcgaaatgg ttgaacctcc acgcactttt
     6061 ttggatttag cattcagttt caaggcagtt tctatcgctt gtaagtcaat gccaaaatgg
     6121 ctttcaaact tttgatcttc tgaggcaatc acagccattt gcatttgcca cgaaatctca
     6181 ttcaggctca cccattcttt tttgatcggg taagatttcc cctgaaccag attctccacc
     6241 tttttttgca ccatatacgc agaataaggc accggtaaca ccgaaaaaat cagtatcgga
     6301 atcaggaaaa atgtgccacc aaaggttaat aagcgactag aaccaaacca aagccagccc
     6361 agtttacttt ttattttgcg aggaataaaa aaaagcccta ttttcttcaa aagagagctt
     6421 aaaaatcgct tgttacgctt tgccattgac tgttccatta accttgccgt tcagccattg
     6481 cagaaaatct tggtcgagtg ttttaagcat atttgaacca cgagtgatgg ttgccgcact
     6541 ggtatttaaa ttttgttgga tttcccgttg cgaatcttca ccttttagca aagcttgcac
     6601 aatttgtaaa cgcaagccta atgaacctcg ctcatcggcg gtgagaaaca ttgagaaaaa
     6661 cggctcaagt ttatcttccg caaccgcttg ttcaagcaga gccaaaaact gcgtccactc
     6721 gtttggatct cgctggttat agagtgtttt catactgtcc cttgaagtaa aaacggtgac
     6781 aagcggtcag atttttacaa aattttgcag aaaaacgacc gcttgctctc cattattttt
     6841 tcgatttttt accgccacgt tggtcgtcta actctgcccc tttcggtacg ctgaatttaa
     6901 acaaatcgct tgagacaccg ccggtagtaa tattgcgtaa cacatataag ttactttgcc
     6961 cgtcacgctc aatggtactg aaacctttta ataaaccgct ttggtcaatc cgcacatcaa
     7021 actgttttaa attgcttttt ttcgattttg gcttaagcac gaaagtatca gcactctggc
     7081 tgacatcata ttgatcccag tggcttttat caccgctggt taataagacg aatggcgtat
     7141 tattaactgc atcttgcacg gtatttaccg taacttgtga aacgaaagga tcgtaaaacc
     7201 ataaatcttt gccgtcagat acaatcaaat tttcttgtgg tgatttggta tccattctaa
     7261 ataagttcgg gcgttttact tggaatttgc ctttgccttg ctgaatttgt ttacctttgc
     7321 tagaacgcac ggtttggtcg aaatccgcac tatattggct tacttgttcc aaacggcgtt
     7381 gtaattctgc aacagattga gcatcagcca atgccacatt tgccaagcca aataacgcta
     7441 aaccgaatac cgatttttta aataatgttt tcatttgttt tcctttttac caacaagaat
     7501 tttcttgttt gacaataaaa tcatcaaaag tttcatatta atgaactgtt acaacaatac
     7561 aataaaagtc gtgaattgta tagtttaatg agcttcgtcc cagttttcgc ctacgccaac
     7621 ttcggcaatc agtggcactt tgaggctaat cgctttttcc atttcggttt tgattaattg
     7681 gctgtaatgg tcgattttat cggctttgac ttcaaacacc aattcatcgt gaacctgcat
     7741 aatcattttg atttcatcat tatcacgaat cgcattatca ataccaatca tcgccacctt
     7801 aataatatcg gcagccgtgc cttgcattgg ggcgttgatt gccacccgtt ctgctgcttt
     7861 acgcaaaata gcattgccgg atttaatatc aggcaagtac aaacggcgac caaatagggt
     7921 ttcaacatag cctttttcaa ctgcaacttc acgaatatcg gtcataaatt gttgaaccgc
     7981 cgggtaacgt tggaagtaga gatccatata tttttgagcc tctgcacgcc caatccctaa
     8041 ttggtttgaa agcccaaatg acgacattcc gtaaatcagc ccgaagttaa ttgctttcgc
     8101 actgcggcgt tgttcggagg tgacttcacc taactccacc ccgaaaattt cggcagcggt
     8161 agcacggtga atatctttgc cctccgcaaa ggcgttaatc attccctcat cattcgataa
     8221 atgagccata atccgtagct caatttgtga atagtcggca gcgacaattt tataaccttc
     8281 tctcgcgaca aaagcttggc gaatccgtct gccctcttca ttgcggatcg gaatgttctg
     8341 caaattcgga tcgctggaag aaaggcgtcc ggttgcggtg actgcttgat tgtaagaggt
     8401 atgcacccgc cctgtttttt tgttaatcag ttgtggtaat ttatcggtgt aggtagattt
     8461 caacttactt aacccacgat gctccattaa taacttcggc actaaatgcc cttgttgagc
     8521 caactcgtct aacacttctt cgttggttga gggtgcacct tttggagttt tcttcaacac
     8581 cggcaagcct aatttttcaa acaaaatctc ttgtaattgt ttagttgagg caagattgaa
     8641 ggtttgccct gcttctgcgt gtactaatgt ttcaacttcc tccaaacgtt tttcaatttc
     8701 agccgattgg gtcaataatt ttttcgggtc aatcaacacg ccattgcgtt caattcgaga
     8761 aagtacgccc acaagtggca tttcaatttc atcgaataac ttcaccaatt caggctcttg
     8821 ctgtagtttt tcccacaata cttggtggag tttcatcgtc acatcggcat cttctgccgc
     8881 atattcagcc gcttttgcta tctcgatttt atcgaaggtc agttgatttt tccccttacc
     8941 agcaagctct tcaaacggaa tcgttttatg ccccaaataa cgggcggcta aatcgtccat
     9001 attatgacga ccggtgctgt tttgggtgta agattcaatc atcgtatcaa aagcaacacc
     9061 ttgtagctca atgccgtagt tcgcaaaaat ggttaaatca tatttaatat tctgcccgat
     9121 ctttttaatc tccgggttaa gcaaaatcgg cttgagttta cttaaacaag cggtcaaatt
     9181 tagctgattt tttaccaatt catcggaaga cgggctttct gaacgctcct catcaccgaa
     9241 catatcggct tgttgcggtt gggctttttg cttatgccca agcggaatat agcacgcctc
     9301 gccattttcc agtgcaaagg aaataccgac caaattagcc gacattgcgt caaggctgtc
     9361 ggtttcggta tccaccgcaa tcaaacgagc tgcggtgagt ttttcgatcc aggctgataa
     9421 tttctgttca gtatcaacgg tctcatattt gctacgatcg atctcgacca catttgcaac
     9481 attttcctca tttctgaccg cttgtgttac ttggtaatta ttcggtactt tttcagccga
     9541 agtttgagtg accggattgg cattttgatt cacttcgttc agccagcgtt taaattcata
     9601 atgctcaaat aattgagcaa gctcagcacg gtcttgcggc tgtgttaaaa gttgatcgtg
     9661 agtaacatca agttccacat cggttttgat ggtagcaagc aaataggata aatcggcatt
     9721 cgctttttcc gcttccaatt ttggggcgaa attttttgcc ccacggaaag aaagggtggc
     9781 aatttgatcc aaattagcat aaatctgttc aagtgaacca atgccttgca ataaagctaa
     9841 tgcggtcttt tcccccacac cttttacgcc cggaatgtta tcggcggaat cgcccattaa
     9901 tgccagaaag tcgataatca actcaggcgg aatgccatat ttttcaatca cgccttcacg
     9961 atctaacaaa gtattgttca tcgtgttaat caacataatg tgatcgttca ccaattgtgc
    10021 catatcttta tcgccggtgc tgatcaacac atctttgccg tctttagcgg cttgcacagc
    10081 aagcgtgccg atcacatcat cagcttccac accttcaatc gaaatcagtg gaatgcctaa
    10141 ggctttgata atgcgatgca aaggctcaat ttgagggcgt aaatcatcgg gcattggtgg
    10201 gcggtgcgat ttatattgct taaacaactc atcacggaag gttttccctt tggcatcaaa
    10261 caccacagca atatggcttg gattcacttg tgaaatcagg ctttttaaca tattcagcac
    10321 gccatacatt gcccctgtcg gttcgcctaa gcgattagtg agcggaggga aagcgtgaaa
    10381 tgctcgatat aaataggaag aaccatccac caataccagt ggattttttg cgatagttgc
    10441 cataaaaatc tctttataat caaataaata ttggcgttat tataca
//
LOCUS       DANLRW010000089         9996 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.089, whole genome shotgun sequence.
ACCESSION   DANLRW010000089 DANLRW010000000
VERSION     DANLRW010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9996
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.089"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(12..335)
                     /locus_tag="PXA71_001923"
     CDS             complement(12..335)
                     /locus_tag="PXA71_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106005.1"
                     /translation="MKNNFGYWLGRKIRAFKEWNHPTFLKYTYIILFLLITYQLRLWL
                     YAVFGAVISLIGIVLLADFMHENNAITQRRNILNELKEIKKLQENDCIKENLTGSHNG
                     TGNGC"
     gene            complement(348..842)
                     /locus_tag="PXA71_001924"
     CDS             complement(348..842)
                     /locus_tag="PXA71_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5106006.1"
                     /translation="MLSGLKIESFSKEFKRDCFDSESELLNQYLKTQVSQDIKRRITS
                     CFLAVNSEQTVVGYYTLASTSLSLSDLPITLQRKLPRYPTVPAVLLGRLAVDKRVKGL
                     GLGQALLGNALKRVLRADIAAYALIVEAKDESAVNFYRKFGFIDFENEARKLFFPLDR
                     VRLS"
     gene            complement(842..1114)
                     /locus_tag="PXA71_001925"
     CDS             complement(842..1114)
                     /locus_tag="PXA71_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HDL5106007.1"
                     /translation="MATATARFEARMSQEVHMLLKRAASLEGRSLSDFVVGAALSAAR
                     KTVEQNDIIRLSVNDQELFAKALIDPPEPNLAMQKALALSSQILGE"
     gene            complement(1273..1701)
                     /locus_tag="PXA71_001926"
     CDS             complement(1273..1701)
                     /locus_tag="PXA71_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106008.1"
                     /translation="MRKLLVITALTLCTTPVFAADKNVIFSCTSTEGKPLTVKRVGND
                     YEYSYDKTTFKNPIKKAVTNDGSIIARGSGFTTYALELENDGLKYLVGFVQPNGNAKE
                     FIEPGATISQSKEQPSIGSVDCDTRKKSHYKFDVHLMNTL"
     gene            complement(1722..3728)
                     /locus_tag="PXA71_001927"
     CDS             complement(1722..3728)
                     /locus_tag="PXA71_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5106009.1"
                     /translation="MKSQFKFKKTHLLVITVLFSSTSSISFADSITDKLEFSKSDSII
                     SDRVFYQIGGGTGYMAPPSRGNTKVVDLGIGWKANLTCGNFDIKTTIKNDLNGLKDGF
                     KDLMGNVIDSAKGAVASMPAMILQRANPQLYDLLTNGMYQGKLDFNRLKTSCEEMSKV
                     LADHTLGGKWGQAADLESYKQITSTQPDAKQAQKDLEDKKGKDGRVWVGGQRKGGQNQ
                     DPINVVGDVAKGGFNLLNKRNVLDSSPVSNCEGNLCQTWDTPQAAADFLTKIIGEQSI
                     STCKEDCGTKTSSKAGVGLSPEIEEEHIRTIVKLENVLNMDVPKSELLAELSSSSVPV
                     TRGLIESLRDDPDVELLSQRLSAEIATSKVMEKMLLARRAILAGMREPNVAQNADAQV
                     ELERVLNIIDREISQVKLEMDMQKMITGNTASVILQSKSEREALAGAHSLSQDSLDKR
                     VQGLENGNVALTDLETGSNINLSRRNIALSIPNIPNVAALIPTLPNRGGSGVGGNFPS
                     LAQISGSTMDQATGLLRNFEGFISKAQWDVNAHRVGYGSDTITRADGTVVKVTKDTVI
                     TKEDAERDLARRTAIFANNVRQELGDSHWNALPANAQAVLVSYAYNYGSLAKTKSVLD
                     AARRSAQTGDMTALATAVRNRQVDNNGINARRRNQEADYILGKN"
     gene            complement(3743..4684)
                     /locus_tag="PXA71_001928"
     CDS             complement(3743..4684)
                     /locus_tag="PXA71_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03756 family integrating conjugative element
                     protein"
                     /protein_id="HDL5106010.1"
                     /translation="MKRAFFSVLLSVSLAVPTTLYPQQVKASLNTASIAASSASTSCL
                     DYKVVGTCFWLFCTYFGCKVRTSTKIKHYLPEMVVSSYNQDGQTPWTELQSLNPGVKG
                     GEYRSPQRQYSQLTFKNADAFGHPQGAIGQLLGSTGYYCKSQTTPFIPYFLSGLDFFA
                     WRENMPEMFYPEALIPGMREVGRVGDSWGNIYPRSGWVTQAHDYKASATIVQRVADIV
                     TRTAQPHIYFPAAKKGGVGEWPPGPVEEGQARTHKWQMLYPQMSNTCSVFPNGGQTDT
                     YSSQISNQGDYAWALWRPYSCCKRRGQTFLYSIDWSH"
     gene            complement(4681..5124)
                     /locus_tag="PXA71_001929"
     CDS             complement(4681..5124)
                     /locus_tag="PXA71_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03757 family integrating conjugative element
                     protein"
                     /protein_id="HDL5106011.1"
                     /translation="MKASRFLGYFSIVTVVFSVVAQAQPNIIVYTTKMYPIQNSQLAS
                     QVYYLDQVENFEEEISRNLSKSPEIAEREIRAFFNSADWKAQEEQLKDAYQGVISGWQ
                     NGIKKVPAVFFNNLQSSPSVIYGMTDIQKALDEWHKWVQQHGESK"
     gene            5499..5852
                     /locus_tag="PXA71_001930"
     CDS             5499..5852
                     /locus_tag="PXA71_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106012.1"
                     /translation="MSQQTAGWDVIPFESSKTAKPSLFWKLGNKLGNIFVSAKHKAKS
                     KYVEVTKGINQRIAEEDEMRALELQMCLDEQAAEYEQEISRIKRKMFFRALFVAIIAF
                     LCGMATVFGTQLSLI"
     gene            5924..6169
                     /locus_tag="PXA71_001931"
     CDS             5924..6169
                     /locus_tag="PXA71_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5106013.1"
                     /translation="MSVHIKLSCVGDILPIKLNEWTPEHRALHHEISHKALEAWQNRD
                     KGTQSVRFMQQMPARQGLHFRFLSVSEQDGKLIVSRS"
     gene            6178..6420
                     /locus_tag="PXA71_001932"
     CDS             6178..6420
                     /locus_tag="PXA71_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106014.1"
                     /translation="MFGKLFYKMNPKVLAKIGEDFRKAGYLMGAGFVGMVISNDQIST
                     SEGFVLFLWGLYIWIIGHIALHHSEKILNSKQGEPK"
     gene            6684..7526
                     /locus_tag="PXA71_001933"
     CDS             6684..7526
                     /locus_tag="PXA71_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106015.1"
                     /translation="MSDSVLNTYFKHALVKAGFPDTLDMEYSLSHCQGDGVAFYGRLG
                     TDDLIQLFNHLNPQKRKQKMFANLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMEL
                     YAKTADQLVFFNDSDARRNWYFPTSKVDKYKALWDGFIEDLEQYIKDISREMESVGYQ
                     IIEASPYQTETVFKFNTEKYLVELQRKPSEFYSELVDWAFGDMCDFEAAIEQICQGQL
                     CYADFEATVTDKKSEIQLGLARLSGISYSPNDRSFSGYRQELIGEAIASARHNAARFA
                     YLHA"
     gene            7641..8054
                     /locus_tag="PXA71_001934"
     CDS             7641..8054
                     /locus_tag="PXA71_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5106016.1"
                     /translation="MKNEHNLEQLKYIWDNRNLENKVYQYLFHICIEPMKKGDWNRYT
                     IWLNFHGNLINVSDVVYRVVESQKLKDDIKIWYDKQYYCRPTKVETTGFISIFLHLFY
                     EGIARILLEQGMITETEAAEKSYNFRAANCFQRLL"
     gene            8068..8223
                     /locus_tag="PXA71_001935"
     CDS             8068..8223
                     /locus_tag="PXA71_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106017.1"
                     /translation="MEPRTVKVIYDDGDYFFTLINADEQTIRNYYAIGSSIGFDNTRK
                     IVAVEIL"
     gene            8303..9286
                     /locus_tag="PXA71_001936"
     CDS             8303..9286
                     /locus_tag="PXA71_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL5106018.1"
                     /translation="MNPQSNTQPKFDLYQEVTDKIIAALEQGTAPWLKPWDSVIPYGG
                     MPCNAISGRLYSGINVLLLWLSAAEHGYIQRKWITAKAAIEAGGHVRKGEKATLAVSY
                     RPYDREKTDDDGNLVLDDDGNPVIEHLASIKKHCLFNIEQCEKLPQDWYETVETPEQL
                     TDENQYAIFEEIRLMLKGMDLQVMVKPSNQAYYHPRNDHIVMPEMKQFHSPQKFHSVL
                     LHEMTHATGHQSRLARDGIVSGKARFGNKVYAFEELVAEMGCAFLCSHLGFADVPQNA
                     SYIESWIKVLREDKRAIFRASGKAREACQYMLDALNIAQLADKYEVFEEAA"
BASE COUNT         2918 a         2005 c         1934 g         3139 t
ORIGIN      
        1 ctatttagaa tttaacagcc attaccagta ccattatggg atcctgttaa attttcttta
       61 atacagtcgt tttcttgtaa ttttttgatt tctttaagtt cattaagtat attacgtctt
      121 tgtgttattg cgttattctc atgcataaaa tcagctaaca gaacaatacc aattaaggat
      181 ataactgctc cgaatacagc atataaccat agccttagct gataagttat taggagaaat
      241 aatataatat atgtatattt gagaaaagtg ggatgattcc attctttaaa agctcgaatt
      301 ttcctgccta accaataacc aaaattattt ttcataatca ctctccatta agataatctc
      361 accctatcta gtggaaaaaa taatttccta gcctcatttt caaagtcaat aaatccaaat
      421 ttacgataaa aattgaccgc actttcatct tttgcctcaa caattaatgc gtaagctgct
      481 atatctgcac gaagtaccct tttaagtgca ttacctaata gagcttgccc taaccctaat
      541 ccctttacac gcttatctac tgctaatcga ccaagtagga cggcaggtac cgtaggatat
      601 cttggtaatt tcctctgtaa tgtaattggt aaatcagata atgaaagact tgttgaagcc
      661 agtgtgtaat atcctactac tgtctgttca gaattaacag ctaaaaaaca agaagtaata
      721 cgtcttttaa tatcttgtga aacctgagtt ttgagatatt gatttaataa ttcagattca
      781 ctatcaaaac aatctcgttt aaattccttg ctaaatgact ctattttcaa tcccgaaagc
      841 attattcccc cagaatctgt gagcttaatg ccaaggcttt ttgcattgcc aaattaggtt
      901 caggaggatc aatcaatgct ttagcaaaaa gttcttggtc attcacagat aatcgaataa
      961 tatcattttg ctcaactgtt tttcttgctg cagatagtgc agctccaaca acaaaatcac
     1021 taagactacg cccttcaaga gaagcggctc gttttaacag catatgaact tcttggctca
     1081 ttctagcttc aaatcgtgcg gttgcagttg ccatatattt tctccttgaa ttatttagtt
     1141 ttaattgtac gtatttatac cgtacaaatc aagcatgaca ataaaaaaat cccttagatt
     1201 ttcaaaccta agggatttac ctaccgatct ttgtgttttt taacgtgggc tggccctagt
     1261 gccatacagg cattataaag tattcatcaa atgaacatca aacttataat ggcttttttt
     1321 acgagtatca caatcaacag agccgatact tggttgttct ttactttggc taatcgttgc
     1381 tcccggctca ataaattctt ttgcattgcc atttggctga acaaagccga ccaaatactt
     1441 caatccatca ttttccagct ctaatgcata cgttgtaaaa cctgaacctc tggcgataat
     1501 tgagccgtca ttagtgactg cctttttaat cggatttttg aaggttgttt tgtcatacga
     1561 atattcgtaa tcatttccta cccgtttaac agtaagcggt tttccctccg tgctggtaca
     1621 ggaaaatatt acgtttttat ctgctgcaaa tactggggtc gtgcagagtg taagagcagt
     1681 aattactaat aatttacgca taaatgtaac tccttataag gttaattttt accaagaata
     1741 taatcagctt cctgattccg gcggcgtgca ttgataccgt tattatcaac ctggcgattt
     1801 ctgacagcag ttgccaaagc agtcatatca ccagtttgag ctgatcgtct agctgcgtca
     1861 agcacacttt ttgttttcgc tagtgagccg taattatatg cataagacac caaaacagcc
     1921 tgagcgttcg ccggtaatgc attccaatgt gaatcaccta actcttgtct cacattgttc
     1981 gcaaagatag cagttctgcg agctaaatca cgttcagcat cttctttggt aatcacagta
     2041 tccttggtca ctttaactac ggtaccgtct gcccgtgtaa tcgtatcgga accatatcct
     2101 acacgatggg cattcacatc ccattgagcc ttggagataa agccttcaaa attacgcagt
     2161 aaccctgttg cctgatccat cgttgaaccg ctgatttgtg caagtgatgg gaaatttccg
     2221 cctacacctg aaccacctct atttggtaga gtcgggatga gagctgctac attcggaata
     2281 tttgggatac tcaatgcaat atttctacga gagaggttaa tattagagcc tgtctctaaa
     2341 tcagttaatg caacattacc gttttcaagt ccttgaacac gcttatccag actatcttgg
     2401 gataaactat gagcaccagc aagagcttcc cgttcggatt tactttgcag aatcaccgaa
     2461 gccgtattgc cggtgatcat tttttgcata tccatttcca gttttacttg ggaaatttca
     2521 cggtcaataa tattgagtac tctttccagt tctacttgag catccgcatt ttgagcaaca
     2581 ttcggctctc gcataccagc taggattgct cggcgagcca gtagcatttt ttccattact
     2641 ttactggtcg caatttcagc ggataaacgt tggctgagaa gttcaacatc tggatcatca
     2701 cggaggcttt caatcaagcc acgagtgaca ggtacactac ttgagcttaa ttcagctaat
     2761 agctcggatt tcggcacatc catattcagt acattttcta atttaacaat tgtacgaata
     2821 tgttcttctt caatttccgg acttaaacca acaccggctt tcgaactggt tttagtacca
     2881 caatcctcct tacaggttga aattgattgc tcaccaataa tcttagttaa gaagtcggca
     2941 gcagcttgag gtgtatccca agtctgacaa agattacctt cacaatttga aaccgggctg
     3001 ctatctaaga cattccgctt attgagtaaa ttaaatccgc ctttcgctac atcaccaacg
     3061 acattaattg gatcttggtt ttgcccacct ttacgttgcc caccaaccca aactctccca
     3121 tctttccctt ttttatcttc taggtctttt tgggcttgct tcgcatcagg ttgtgtcgag
     3181 gtaatttgct tatagctctc taaatctgct gcttgccccc attttcctcc tagtgtgtga
     3241 tctgccagaa ctttagacat ttcctcacag gaagttttta gacggttgaa atccagctta
     3301 ccttggtaca taccatttgt cagcaaatcg tagagttgag ggttggcccg ttgcaatatc
     3361 attgcaggca tactggcaac cgcaccttta gctgaatcaa tgacattccc cattaaatct
     3421 ttaaagccat ctttaaggcc gtttaaatca tttttaatag ttgttttaat gtcaaaattg
     3481 ccacaggtta aattcgcttt ccaaccgatg cctaaatcaa cgactttggt attaccacga
     3541 ctaggtggag ccatataacc tgttcctccg ccgatttggt aaaagacacg atctgaaata
     3601 atcgaatccg acttactaaa ttccagttta tcagtgattg agtcagcaaa agagatagag
     3661 gaagtactgg aaaaaagtac tgttattact aatagatgtg ttttcttgaa tttaaattgt
     3721 gatttcattg caagacctcg ttttagtgtg accaatcaat actgtaaagg aatgtttgcc
     3781 ctcggcgttt acaacaacta taaggtcgcc atagtgccca agcataatca ccttgatttg
     3841 aaatctgaga ggaataggtg tctgtttgcc ccccatttgg aaaaacagag caggtatttg
     3901 acatttgagg ataaagcatt tgccatttat gtgttctggc ttgtccttct tcgacaggtc
     3961 ctggtggcca ttctccaaca ccaccttttt tcgctgccgg gaaataaata tgtggttgag
     4021 cagttcgggt cacgatgtct gcaactctct gcacaatggt tgcagaggct ttataatcgt
     4081 gagcttgtgt tacccaaccg gaacgtgggt aaatatttcc ccagctatcg cctacacggc
     4141 caacttcccg cattcccgga atcagagctt ccggataaaa catttccggc atattttcac
     4201 gccaagcaaa gaaatctaat ccacttagaa aatagggtat aaatggtgtg gtttgacttt
     4261 tacaatagta gcctgtactt cctaataact gaccaattgc tccttgggga tgcccgaaag
     4321 catctgcatt tttgaaggtt agttgagagt attgacgttg cggagaacga tattctccgc
     4381 cttttacgcc aggattgaga gattgtaatt ctgtccacgg agtttgccca tcctggttat
     4441 aagatgaaac gaccatttcc ggtaaataat gcttaatttt ggttgatgta cgaaccttgc
     4501 atccaaagta ggtgcaaaat aaccagaagc acgttccgac gactttatag tctaaacagc
     4561 ttgttgaggc acttgatgca gcaatcgacg ccgtattcaa tgatgctttt acctgttgag
     4621 gatataaggt tgttggtact gctaaactta cagagagaag taccgaaaaa aacgctcttt
     4681 tcattttgat tcaccgtgtt gttgaaccca tttatgccat tcatctagtg ctttttgtat
     4741 atcagtcata ccataaatca cgctcggaga ggattgcaga ttattaaaaa acaccgcagg
     4801 cactttttta attccatttt gccatccact gatcacccct tgataagcat cttttaattg
     4861 ctcttcttgg gctttccaat ctgctgaatt aaagaatgct cgtatttctc gttcggcaat
     4921 ctcgggggat ttactgagat ttcgactgat ttcctcttca aaattctcta cttgatcaag
     4981 ataataaact tgggaggcaa gttgtgaatt ttgaatgggg tacatctttg ttgtatagac
     5041 aatgatattc ggctgtgctt gtgccactac agaaaacact actgttacta tgctgaaata
     5101 tcctagaaat ctacttgctt tcatcactct ctttccgaat aaataagcag aaaattagcg
     5161 agatttttac atagaggata ggaaaaactc ttttcaaaaa agagatattt ttttgagcaa
     5221 aaaatggttg attttataaa tggatttcgt atgatatgga atattaagat gctgtggaaa
     5281 cagcccttaa aagtcgcata actcttgaga agcggcggct atccatcgag gtagttgagt
     5341 tatttaccca aaatgtctcc cagcattctg aaagggaacg ctgcaaattt gcaggaatgc
     5401 cacctaaaca cctaccttcc gagggatatt tcaattccct tggaattgcg atctcctgag
     5461 gaattttatt tatttaactt tttataggag aactcgctat gagtcaacaa accgcaggat
     5521 gggatgtgat cccatttgaa tcgtcaaaaa ccgcaaaacc ttctcttttt tggaaacttg
     5581 gcaataagct cggtaatatt ttcgtttcgg cgaaacataa agctaaaagc aaatatgtcg
     5641 aggtaaccaa aggcatcaat caacgaattg ctgaagaaga tgaaatgcga gccttagaat
     5701 tgcaaatgtg cttagatgag caagcagctg aatatgagca ggaaatttct cgcattaagc
     5761 gtaagatgtt tttcagggct ttattcgttg cgattattgc ctttttatgt ggtatggcta
     5821 ccgtttttgg tactcagctc tctttaatct aatttaactc acccatcggg gaaatgctat
     5881 ttcccttgtg gtaatacatt tccccttaat tttggagaaa tgtatgtcag ttcatatcaa
     5941 actctcctgt gttggagata ttttgccaat caaactcaat gaatggacac cggaacatcg
     6001 agccttacat cacgaaatta gccataaagc tctcgaagcc tggcaaaatc gagataaagg
     6061 cactcaaagc gtgcgattta tgcaacaaat gccagcccga caaggactgc atttccgctt
     6121 tctgagtgta tcggagcaag acggcaagct cattgtcagt cgttcatagt tggttcaatg
     6181 tttggtaagc ttttttacaa aatgaatccc aaagtactag ctaaaatcgg agaagatttt
     6241 agaaaagctg gttatcttat gggagctggt tttgtcggaa tggtaatttc caatgatcag
     6301 atttccacat cggaaggatt tgttcttttt ttgtggggat tgtatatttg gattatcggg
     6361 catatcgcac tacatcattc tgagaaaata cttaattcaa agcaaggaga accgaaatga
     6421 gtccgtactt tttaggtgct gctattggaa cagcgttatt ggcaacaatt tttattgttc
     6481 tagtaacttg ggcaaatcga gatattttgt ttacaaaatc agataagcca cagtctaaat
     6541 agcaaaactc cattctaacc cataggggaa caagttcccc gaggagcttg ttctccgttt
     6601 taccttcctt ttaccctatc gggaaatact ttcccgaatt gggcttaagt gtttcccatt
     6661 attttttatt ttggagaaac attatgtcag attcagtatt aaacacttat tttaaacacg
     6721 ctcttgtcaa agctggtttt ccggatacct tagatatgga gtattcactc agccattgtc
     6781 aaggagatgg agtcgcattt tatggtcggc ttggtacaga tgatctaatc cagcttttca
     6841 atcatctcaa tccacagaaa cgtaaacaga aaatgtttgc taatttgcta acgcacattg
     6901 aatcttggga aacccacgat gatattggtt ttgaaattat acgaaatcgc tttgggtatc
     6961 gttactcgca ttggaatacg atggagcttt atgctaaaac tgcagatcag ttagtgtttt
     7021 tcaatgatag tgatgctcga agaaactggt attttcctac ttcaaaagtg gataaataca
     7081 aagcattgtg ggacggattt atcgaagatt tggagcagta catcaaagat atttcccgtg
     7141 aaatggaatc ggtcggttat caaattattg aagcctcgcc gtatcaaacg gaaaccgttt
     7201 tcaaatttaa tacggaaaaa tatctagtag aactgcaacg taaaccttct gagttttatt
     7261 cagagcttgt tgattgggca tttggtgata tgtgtgattt tgaagcagct atagagcaga
     7321 tttgtcaagg gcaactctgt tatgctgatt ttgaagcaac tgttaccgat aagaaaagtg
     7381 aaattcagtt aggtcttgct cgcttgagtg gaataagtta ctcgccgaat gaccgttcgt
     7441 ttagtggtta tcgacaagag cttattggtg aggcgattgc ctctgctcgc cataatgcag
     7501 cacgttttgc ctacttgcac gcctaatttg cagattttta ctttaatttg accgcttgta
     7561 gtggttaatt ttcaccccgt ggggaaatat tttccctatt gggcaaaatg tttctccact
     7621 ttttaatttg gagaaatgtt atgaaaaatg aacacaattt agagcaactt aaatatattt
     7681 gggataaccg caaccttgaa aataaagtct atcaatatct gtttcacatc tgcattgagc
     7741 cgatgaaaaa aggagattgg aatcgttata cgatttggct taattttcac ggtaacttaa
     7801 tcaacgtgtc agacgttgta tatcgagttg tggaatctca aaagctcaaa gatgacatca
     7861 aaatttggta tgacaagcaa tactattgcc gtccaaccaa agttgaaaca acaggtttta
     7921 tttccatttt tctgcacctg ttttatgagg gcatagctcg tattttgctg gaacagggaa
     7981 tgattactga aactgaagca gccgagaaaa gttacaactt cagagctgca aattgttttc
     8041 aacgtttgct ttaatggagg tgagataatg gaacctcgca ctgttaaagt tatttacgat
     8101 gatggcgatt atttctttac cctaatcaat gccgatgaac agactattcg taattactac
     8161 gctataggca gttcaatcgg ttttgataac acaaggaaaa ttgtcgctgt tgaaatttta
     8221 taaactaccc atcggggaaa cgacttcccc atagggcgat agtgtttccc catttttcta
     8281 cccgaacttt ggagaaacac ttatgaaccc tcaatcaaac acacagccta aatttgattt
     8341 atatcaagaa gtgaccgata aaatcatcgc cgctttagag caaggaacgg ctccttggct
     8401 taaaccttgg gatagcgtta ttccttatgg tggtatgccg tgtaatgcca tatccggaag
     8461 attgtattcc ggaatcaatg ttttgttact ttggttgtct gccgcagaac acggctatat
     8521 ccaacgcaag tggatcactg caaaagcagc tattgaagcc ggtggacacg ttcggaaagg
     8581 tgaaaaagca acccttgcgg tcagctatcg cccgtatgat cgagaaaaaa ccgatgatga
     8641 tggcaacctt gtcctcgatg acgatggtaa cccggtaatc gaacatctcg cttcgattaa
     8701 aaagcactgc ctattcaata ttgaacagtg cgaaaaactg ccacaggact ggtatgaaac
     8761 ggttgaaacc ccagaacagc tgactgacga aaatcagtat gctatttttg aggagattcg
     8821 tttgatgttg aaaggtatgg atttgcaagt gatggtaaaa ccaagcaatc aagcttacta
     8881 ccacccacgc aatgaccata tcgtgatgcc ggaaatgaag cagtttcatt caccacaaaa
     8941 attccatagc gtgctgctac atgaaatgac tcacgcaaca gggcatcaat ctcgccttgc
     9001 tcgtgatggt attgtttccg gaaaagctcg ctttggcaat aaagtttatg cttttgaaga
     9061 attggtcgct gaaatgggct gtgcattctt gtgttctcac ctaggctttg ctgacgtgcc
     9121 acaaaatgcc agctacattg aaagttggat caaggtgtta agagaggata aacgggcaat
     9181 tttcagggct tcagggaaag ctcgggaagc ctgtcaatat atgctggatg ccttaaacat
     9241 cgcacagctg gctgataaat acgaagtatt tgaagaagcc gcttaataaa tttgccgaaa
     9301 ggcatttccc gtggggagat actctccctt cggggcattg tgtctccctt tttattcact
     9361 taacgagagg actcaatgct caatctaaac ttatttaaac gacccattga aatttcgaca
     9421 cttgaatctt ggtcaaaatt ctgtgatgat gttggtaaag tagcttttgt tgcagtacct
     9481 gctatgctgt atagtaatta cgagttttgg attaagataa gcagtataat tggtctattt
     9541 atagctacct atttctgttt agttatcggt agaaatatac gccaatttat tgagaaggag
     9601 aaatcaaaat gggattaatg atcggcattt ggattattgc ttttattgca tttgggttgg
     9661 ccatatggac aagccatatt ctaaaaaagc aagatgaacg ccttaaacag ctaaaaaata
     9721 gctaactttc aaaatacggc acattttgtg ccgtatttct tttgtactgg tggcaaatat
     9781 aagattacta tcatcagtat attgtaatat ctcaactcaa cagcattagt caaaaatcct
     9841 ccaacatatt cagagagttt ttcctactga gttctcttat tttttggttc aatactctcc
     9901 ctttataaat taaatttggt tcagataaaa gccgctcaat ggcaaaagga taaaggagcc
     9961 cttacgggca agggtaatcc cctaaggggg aataag
//
LOCUS       DANLRW010000090         9976 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.090, whole genome shotgun sequence.
ACCESSION   DANLRW010000090 DANLRW010000000
VERSION     DANLRW010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9976)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9976)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9976
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.090"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            282..1988
                     /locus_tag="PXA71_001937"
     CDS             282..1988
                     /locus_tag="PXA71_001937"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HDL5106019.1"
                     /translation="MNTSSFNRTWAKVILSALMRYGVKHFCIAPGSRSTPLTLAAVQL
                     QQTQYAECHTHFDERGLGFYALGIAKATDSPVAIIVTSGTAVANLYPAVIEASLSHQK
                     LIILSADRPTELIGCGVNQAIHQQGIFANYPVASVNLPKANEAYHASWLVSTIEQACT
                     TQAQQGGVLHINVPFEEPLYEADINEILNTPWLRPIQGWLNNAQTKWIDQQAIQSEVS
                     MHENWDYWRTKRGVIVVGKLPPEQGTGLKTWAETMGWCLLSDVQSCIEASLPYADIWL
                     SNETVKQRLLQADIVIQFGTQIVSKRVNEFLKAFQGEYWVVEQSHDYHNPNAHHQTRF
                     IAKAHHFLRVHPPLRQKPWLLEPLALSQFCSTFIEQQVGGSLSEASLAHNIQDVLAIN
                     GNLFIGNSLFVRLVDALCKLPEGYPVYTNRGASGIDGLIATMAGIAKGSDRPTVGVVG
                     DISALHDLNSIALLTKINQPTILFVVNNSGGALFDMLPVDSKAKDQYYRLAHNFEFAQ
                     VATMFGLEYIRPFTWADLKTKLKHAYARKGVTIVEIKVNEHDGSNMYKSLLKQISQAE
                     IA"
     gene            2037..2876
                     /gene="menH"
                     /locus_tag="PXA71_001938"
     CDS             2037..2876
                     /gene="menH"
                     /locus_tag="PXA71_001938"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HDL5106020.1"
                     /translation="MLSYQWHAQQGTPVVFLHGLLGSQQDWQAVLQHLQNFPQIRPLT
                     IDLPFHGNSKHITCADFANLRQQLHATLESLIGSRPFYLVGYSLGGRAALDYVLNMEN
                     PNLQGVVLEGANIGLSTENDRQIRRQNDRHWANRFRQEPIEQVLEDWYKQPVFADLSD
                     TERECYIDSRKHNQGEQIAQMLEATSLAKQPDYTEKLKQTDKNIVFFIGEKDQKFRKM
                     ASSHQLPTQLIANAGHNAHRANAKNFVEKLGLLILHSDSDLRSQSVKHNGAALLHKSP
                     SGA"
     gene            complement(2925..3602)
                     /locus_tag="PXA71_001939"
                     /pseudo
     CDS             complement(2925..3602)
                     /locus_tag="PXA71_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251475.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            3688..4350
                     /locus_tag="PXA71_001940"
     CDS             3688..4350
                     /locus_tag="PXA71_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="HDL5106021.1"
                     /translation="MRKTHSFQQVRKIKPTWMSVSGHIPFRNGVSIPYESTLERDFLM
                     YFTYLPSVDEVVSQPTTLPFVKNGITYTYTPDFFLSFTDGRKPMLIEVKPKAKWQKHW
                     KEWKEKWKAAIRFCQENGYVFHVYDEDRIRHLALFNLNYVQRYKRIQHEQEDIDAILA
                     QVKLMGNTTIDYLLSRFFAGSLYRMKGLQIIYHLLATKQLHCNWFLPLNEFTEVWGNN
                     DE"
     gene            4340..6268
                     /locus_tag="PXA71_001941"
     CDS             4340..6268
                     /locus_tag="PXA71_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HDL5106022.1"
                     /translation="MMSNSGFTEKRYHHRLDRGRIILQKGNIYLNREDGEQYELVDYM
                     DEPSQLLVRNLNTRTTKVVSIHQLENFKMNERTDLSVDVTAISNEYWEKAQQKYEAIK
                     PLLGMDQHRPYAVKARAEDVGVNPRTLYRWLQAYNSIGSIAGLVDQKRGWQQGNSRLT
                     PEQDKLIVQVINEFYLHKQRPTTEQTIREIRRRCKIEKVESPSKETIRMRILHISEEE
                     RLRKRGQREKARNKFKPKPNSFPDADYPLSVVQIDHTPVDLIIVDSKYRKPIGRPFLT
                     VAIDIYSRMIVGYYLSLDAPSVTSVAMCIARGILPKERLLLDLGLQGSEWNAFGYPVK
                     VHVDNGPDFQALDLSKSCSAHGIHLEFRPMGRPEYGGHIERVIGTFMKEVHSLAGTTF
                     SNIKERDSYDSEKEAIMTLDEFEKWLVHYIVNVYHKRVHSALGISPEQKWKIGIFGDE
                     NEVGCGYPQLPVDEQTLLLDFLPSITRTIQHNGVTIDGLRYYDVALNMYISDSDESGK
                     SKEFLFRRDPRNISKIWFYDPKLKRYFPIPFANQAMPEMSIWEYREVRSRIANKGDKY
                     INEQQVLDGLTEMREMVAESAQRTKKARRQAERQKMHKASKPIIETKVETKAVVPVVV
                     TSNLLALDDESLSFGEVD"
     gene            6268..7155
                     /locus_tag="PXA71_001942"
     CDS             6268..7155
                     /locus_tag="PXA71_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012478339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniB family NTP-binding protein"
                     /protein_id="HDL5106023.1"
                     /translation="MQYEHVHEKFRHLVTADNQERIAFLDEPRWLGYGVAKDIMDNLV
                     SLMNKPKRPRMLNLLIVGDSNNGKTTLIRRFFDLYGQAYIDSDSNAIYPILLAEAPPS
                     ANEKELYISLLERFYVPYKPTDTIAKLRYQTIHLFREFRVKMLVIDEFHSLLVGTPRL
                     QRQVMNAIKMLCNELQIPIVGVGTRDAIRVLHTDRQHASRFDVAELPIWKLDKEFQKL
                     LFQFQGILPLRESSNLQSPELATKIHTISGGNLGNVHRLLTACAVQAITSGTEKITLD
                     IIEKNSWVQPTNGYRKIIG"
     gene            7113..8219
                     /locus_tag="PXA71_001943"
     CDS             7113..8219
                     /locus_tag="PXA71_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TniQ family protein"
                     /protein_id="HDL5106024.1"
                     /translation="MGTTNKRLSQNNRIKKGVIHTPIYSNESISSWLIRASFDCGTDP
                     LTFTGFYWEKHRLWTLDLDRGLENIEPTIYDDVQALSGKIQLSEYSLFRRLYPINADE
                     TLAKGQVRWVIPRSARNRTHHIGQQYCPLCLDESPHLRNDWRLAWNFGCLKHNMMLAN
                     RCFCCGTLYQPHLLSAEKRHLNHCHQCGGKLEQGTMEMSLAEKLTLQGINQVLEKDSG
                     ICFGYKVSGKVWFDMLRYCINLLRRASDRPNHALAKFVVNLQIDVENICSPKTGLSFE
                     QLPLGERTNLLVNAYHILGMEADSIRSAIYLCGGTQKTFMFEKYPDFWQEFMALAPAG
                     PNRTRKRTKPQNESITAINRRWERLKRKLHLNNE"
     gene            8216..9640
                     /locus_tag="PXA71_001944"
     CDS             8216..9640
                     /locus_tag="PXA71_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106025.1"
                     /translation="MKINVIKPQEEPCSACGKISRIWRRYNGEGYCANCYAKWFPKKE
                     CSCCHQPKRIYLSSTVCWDCEKQTDCVRCGKAAGTFKIGKITRYGAVCNVCSRYFREE
                     RECFECGQLSRTMLRASESGHSELLCLKCFQKYRFATCKNCRRYRKVHDRDNQLCRKC
                     SEQRTSQCPKCKQDMPAGYGNICADCSRRTLLFNLIRMNVHLFRHKKVKRAYKKFIFW
                     YLAKCGVSVVLKKSDDHVLFFMRCDENWGNIPDYRELVTFFKPNGLRTHLTVLRWLLD
                     TNQVKVDESLKEEMAGLERIQSLFNKLSNSVPCIANYYTQLQHKYEAGKTSLKSVRLA
                     LQPAIDFISSESVSLLPTQVQLNSYLVAKTGQIAAITGFINHLNREYHCELEIDRSLI
                     QKMKEKQLKQQAKQRLAILYKQEKLSIKEQNELLSVVLLNLHNIWIKSPKKLSISEID
                     GIAYYVDNEKKYFIPKDIHIRLME"
     gene            9755..9961
                     /locus_tag="PXA71_001945"
     CDS             9755..9961
                     /locus_tag="PXA71_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA delta(2)-isopentenylpyrophosphate
                     transferase"
                     /protein_id="HDL5106026.1"
                     /translation="MTLKAQFREWLKKEQEHDEMIGFAHIPCILSKVDSKLAIVSGNA
                     YEKKYLRYWIKCFRFDRNISKYIK"
BASE COUNT         3101 a         2006 c         2133 g         2736 t
ORIGIN      
        1 catactattc tccaaaatac ttataagtct ataaaaaatt tacacttgtt ctaatataat
       61 gaataaaatt ataaactaaa acacaaattc gaaatacgtt tcttcgtaaa tgctcttaaa
      121 aaagagagag tttactaagt aaagtgttgc tcaatagata gaaattttca cgaagtttta
      181 caaaaacatt ccaattttct cctaaaaaac ttcccacaat aatttcactt tttgctacaa
      241 tcctaaccat ttatcgaatt tatcaatcag tagagaagaa tatgaatacc agttctttta
      301 atcgcacttg ggcaaaagtg attttaagtg cattaatgcg ttatggcgta aaacattttt
      361 gtattgctcc gggttctcgc tcaacaccgc tcacattagc ggcagtgcaa cttcaacaaa
      421 cgcaatatgc agagtgccac actcattttg atgagcgtgg tttaggtttt tatgcgttag
      481 ggattgctaa agcaaccgac agcccggttg ctattattgt cacttccggc acagcagtag
      541 cgaaccttta tcctgcggtg atagaggcaa gcctgagcca ccaaaaactg attattcttt
      601 ctgccgaccg cccaaccgaa ttaatcggct gtggggtaaa ccaagccatt catcagcaag
      661 gtatttttgc caattacccg gttgccagtg tcaatctacc gaaagcgaac gaggcttacc
      721 acgcaagctg gctggtttcg accattgagc aagcctgcac tacccaagca caacaaggcg
      781 gtgtgttgca tatcaatgtg ccttttgaag agccgcttta cgaagcagac attaatgaaa
      841 ttctaaatac accttggtta cgcccaatcc aaggctggtt gaataacgct caaaccaaat
      901 ggatagacca acaagcgatt caaagcgaag tctcaatgca cgaaaattgg gattactggc
      961 gaactaaacg aggggtgatt gtggtcggca aactgccgcc ggaacaaggc acaggtttaa
     1021 aaacttgggc ggaaaccatg ggttggtgct tgctaagtga tgtgcaatct tgcattgaag
     1081 ccagcctgcc gtatgccgat atttggctct ccaacgagac tgtcaaacag cgtttattgc
     1141 aagcggatat cgtgattcaa ttcggcacgc aaattgtcag caaacgggtg aatgaatttt
     1201 taaaagcatt ccaaggggaa tattgggtgg tggaacaatc gcacgattac cataatccaa
     1261 acgctcatca tcaaacccgt tttattgcca aagcacatca ctttttgcgg gtacacccac
     1321 cacttcgcca aaagccatgg ttgcttgagc cattggcatt atcgcaattc tgctccactt
     1381 tcatagagca acaagtgggt ggcagcttaa gtgaagcctc acttgcacac aacattcaag
     1441 atgttttagc aattaatggc aacttattta tcggcaatag cttatttgtt cgattggttg
     1501 atgctctgtg caaactgccg gaaggctacc ctgtttacac caaccgtggt gcaagcggta
     1561 ttgatggctt aatcgcaaca atggcaggca ttgcaaaagg tagcgaccgc ccgactgtcg
     1621 gtgtggtagg tgatatttcc gcattacacg atcttaactc aattgcattg ctcaccaaaa
     1681 ttaaccagcc gaccatttta tttgtggtga ataacagcgg tggtgcgttg tttgatatgt
     1741 tgcctgttga tagcaaagcg aaagatcaat attaccgcct tgctcacaac tttgaatttg
     1801 ctcaagtcgc cacaatgttc gggcttgaat atatccgccc gtttacttgg gcagatctaa
     1861 aaaccaaact caaacacgcc tatgctcgta aaggtgttac cattgtggaa atcaaagtaa
     1921 atgaacacga cggcagcaat atgtataaat cattgctaaa acaaatttca caggcggaaa
     1981 ttgcctaatc acaactgccc ctcgccaatc ctgcgagggg taaaaatgta tcgactatgc
     2041 tttcctatca atggcacgct caacaaggca cacccgtggt tttccttcac ggcttgctcg
     2101 gctcacaaca agactggcaa gctgttctcc aacatttgca aaattttccg caaattcgac
     2161 cgcttaccat tgaccttcct tttcacggaa atagtaagca cattacctgt gccgattttg
     2221 ccaacctgcg acaacaacta cacgccaccc ttgaaagcct aatcggctca cgacctttct
     2281 atttagtcgg ctactcactc ggtggacgag cggcactcga ttatgtgtta aatatggaga
     2341 atccgaatct gcagggcgtg gtgttagaag gggcgaatat cggcttaagc acagaaaacg
     2401 accgccagat tcgccggcaa aatgaccgcc attgggcaaa ccgtttccgt caagaaccca
     2461 tcgaacaagt gcttgaagat tggtacaaac agcctgtttt tgcggattta agcgatacgg
     2521 aaagagaatg ttatattgat agcagaaagc acaatcaagg agagcaaatt gctcaaatgc
     2581 tggaagccac cagcctcgcc aaacagcctg actacaccga aaaactcaag cagacggata
     2641 agaatattgt cttttttatc ggtgaaaagg atcagaaatt tcgcaaaatg gcatcaagcc
     2701 accaactacc aacacaactg attgctaatg cagggcataa cgctcatcgg gctaatgcta
     2761 aaaattttgt ggagaaattg gggttattga tactccactc cgacagcgac ctacggtcgc
     2821 aatcggttaa gcataacggt gcagctctgc tgcacaaaag ccccagtggg gcttaatcag
     2881 ccgtaggcta aatataacct agtacggctc agccgtgcta ggtgttaggg ctccccctgc
     2941 aaccgttgca ataagcgatc catcgcccga taaccaagtg cttccgctaa atgcagttgt
     3001 tgaatattcg cctcgccggc taaatcagca atagtccgag aaactttcaa aatacggtgg
     3061 taggctcgta ccgataaacc gagctttgtc aatgcagttt ctaaaaatag ggcatcttgt
     3121 gccgataatt ggcaatctcg ctcaatttct cgggtggtga gttgagaatt gattttacct
     3181 gctcgctcaa attgcatttt tctggctaaa aacactcgct tgcgaacctg ctcggtggtc
     3241 tctcctcgat tctccgtccc actttgcaat gctccttgtg gcaaaagtgg cacttctata
     3301 gagagatcga aacggtctaa gaaaggtccg gaaaggcggt ttaaataccg cattacctgt
     3361 tggggcgaag tgcggttatg cgtgccttga taatgccctg tcgggcttgg gttcatcgct
     3421 gcaattaatt gaaagcgtgc cggaaattgt actttagcgt tggctcggga aatcacaatt
     3481 tcgcctgcct ccaacggctg acgtaacgca tcaagcactt tacgttcaaa ttcaggcaat
     3541 tcatctaaga acagcacacc gttatgggca agtgaaattt cccccggttt ggggatcgag
     3601 ccactgtaaa aactagaaat aaatgtcata aaaactagaa atagctgtca gattatttag
     3661 aaaacaagaa ataggtgtca aattattatg agaaaaacac atagttttca acaggttaga
     3721 aaaattaaac ccacttggat gagtgtatcg gggcatattc catttagaaa cggagtcagt
     3781 attccctatg aatcgacttt agagcgtgat tttttgatgt atttcactta tctaccttca
     3841 gtagatgaag tcgtctctca accgactacc ctacctttcg tcaagaatgg gatcacttat
     3901 acctatacac cagatttctt cttgtcattt acagacggtc gaaagccgat gttaatcgag
     3961 gtcaaaccga aagcaaaatg gcagaagcac tggaaagaat ggaaagaaaa atggaaagct
     4021 gcaatacgtt tttgccaaga aaacggttat gtattccatg tgtatgatga agatcggatt
     4081 cgacatctag cgcttttcaa tctcaactat gttcagcgct ataagcgaat acaacatgaa
     4141 caagaagata tagatgctat tctagcccaa gtaaagctga tgggaaatac cactattgac
     4201 tatttactct ctcgattttt tgcaggttct ctatatcgca tgaaaggcct acaaatcatc
     4261 tatcacttac tggcaacgaa acaactacat tgcaattggt ttctaccact taatgaattt
     4321 accgaggtat gggggaataa tgatgagtaa ctctggattt acagaaaagc gctatcatca
     4381 ccgattagat cggggacgta ttattttgca aaaaggtaat atttacctaa atagagaaga
     4441 tggagaacag tatgaattgg ttgattatat ggatgaaccc tcccaactgc tcgtacgaaa
     4501 tctcaacact cgtacaacca aagtcgtcag tattcatcag cttgaaaatt tcaaaatgaa
     4561 cgagcgaacg gatctttctg tggatgtaac cgctattagt aatgaatatt gggagaaagc
     4621 ccaacaaaaa tatgaggcaa ttaaaccgtt attagggatg gatcaacatc ggccttacgc
     4681 agttaaggct cgtgcagaag atgttggggt gaaccctcgt acattatacc gttggttaca
     4741 agcctataat tccataggat ctatcgcagg tttagtcgat caaaaacgtg gatggcaaca
     4801 aggaaattcc cgtttaacgc cagagcaaga caagctgatc gtgcaggtaa tcaatgagtt
     4861 ttacctacat aaacaacgcc caactactga gcaaactatt agagaaattc gccgccgatg
     4921 caaaattgaa aaagtggaaa gcccaagcaa agaaaccatc cgtatgcgca ttttgcatat
     4981 ttcagaggaa gagcgattac ggaaacgcgg gcaacgagaa aaggcacgca acaaatttaa
     5041 gccgaagcca aatagctttc ctgatgcgga ttatccattg agtgtggtac aaattgacca
     5101 tacaccagtt gacctaatta ttgtggatag taagtatcgt aaaccgattg gccgaccgtt
     5161 tttgacggtt gcgatagata tatacagcag aatgattgtt ggttattacc tttcacttga
     5221 tgcgccttct gtaacttcgg tggcgatgtg tattgcacgt ggtattttgc cgaaagaacg
     5281 cctactgctt gatttaggtt tgcaaggctc agaatggaat gcttttggct acccagtgaa
     5341 agtgcatgtg gataatggcc cagattttca ggctttggat ttatctaaat cttgttctgc
     5401 acacggaatc catcttgaat ttagaccgat ggggcgacct gaatatggcg gacatattga
     5461 gcgtgttatc ggtacattta tgaaagaagt tcacagttta gcaggaacaa cattctccaa
     5521 catcaaagag cgtgactctt acgattcgga aaaagaggcc attatgactc tcgatgagtt
     5581 tgaaaaatgg ttggtacatt acattgtgaa tgtttaccac aaacgtgtgc attctgcttt
     5641 aggcatttct cctgaacaaa aatggaagat tggtattttt ggagatgaaa atgaagtggg
     5701 atgtggttat ccgcaacttc ctgttgatga acaaacacta ctacttgatt tcttgccaag
     5761 tatcactcgt accattcagc ataatggtgt aacaattgac ggacttcgtt attacgatgt
     5821 tgcgctaaat atgtatatca gtgattcaga tgaaagcggt aaatctaagg aatttctgtt
     5881 tcgccgagac ccgcgaaata tcagcaaaat ttggttttat gatccgaaat taaaacgtta
     5941 cttcccaatt ccatttgcaa atcaggcaat gcccgaaatg agcatttggg aatatagaga
     6001 ggttcgtagc cgaattgcga ataaaggtga taaatatatc aacgagcaac aagttttaga
     6061 cggtttaacc gagatgcgtg aaatggttgc tgaatcggct caacggacga aaaaagcacg
     6121 ccgtcaggct gaacgacaaa aaatgcacaa agcaagtaag ccaattattg aaacaaaagt
     6181 ggaaactaag gctgttgtac cagtcgtagt aacatcgaat ttgcttgctt tagatgatga
     6241 gagcttatct tttggtgagg tggactaatg caatacgaac atgttcatga aaaattccgc
     6301 catcttgtga cagcggacaa tcaggagagg attgcgttct tggacgagcc aagatggtta
     6361 ggttatggtg tcgccaaaga cattatggat aatttggttt ctttaatgaa taaaccaaaa
     6421 cgcccacgaa tgttgaattt gttgattgtc ggcgattcca ataatggaaa aaccacactg
     6481 atccgccgct tcttcgactt gtacggtcag gcgtatatcg acagtgattc taatgcgatt
     6541 taccctattc ttcttgccga agccccacca agtgcgaatg aaaaagaatt gtacatctca
     6601 ttattagagc ggttctacgt accatataag ccgacagata cgatagccaa acttcgttat
     6661 cagactatcc atttgttccg agaatttcgt gtcaaaatgt tggttattga cgagtttcat
     6721 tctctgttgg ttggtacacc acgcttacaa cgacaggtga tgaacgcaat taagatgctt
     6781 tgtaacgagc tacaaattcc aattgtcggt gttggtactc gtgatgcaat tcgggtatta
     6841 catacggatc gacaacatgc cagtcgtttt gatgttgcgg aattgccaat atggaaacta
     6901 gataaggaat ttcaaaaact cctatttcaa ttccaaggga ttttaccttt gagggagagt
     6961 tcaaatctgc aatctccaga acttgctacg aagatccaca ccatttcagg tgggaactta
     7021 gggaacgtgc atcgcttact aacagcttgt gcagttcaag ccattacaag tggcacggaa
     7081 aaaatcacct tagacatcat tgagaaaaat tcatgggtac aaccaacaaa cggctatcgc
     7141 aaaataatcg gataaaaaaa ggtgttattc atacccctat ttattcaaat gaaagtatta
     7201 gctcgtggtt aattcgtgca tcctttgatt gtggtacaga tccactgact tttacagggt
     7261 tttattggga aaaacatcgg ttgtggacat tagatttaga tcgtggcttg gaaaatattg
     7321 agccaactat ctatgatgat gtacaggcat tatcgggtaa aatccaactt tcagaatatt
     7381 ccttgtttcg caggctttac cctataaatg cagatgaaac cttagctaaa ggtcaagtaa
     7441 gatgggtgat tccacgttcg gcaaggaata gaacccatca cattggtcaa caatattgtc
     7501 ctttgtgctt ggatgagtcg ccacatttac gcaatgattg gcggttagcg tggaattttg
     7561 gttgtctcaa gcataatatg atgttggcga acagatgttt ttgttgtggt acattgtatc
     7621 aaccccattt actatcagcg gaaaagaggc atttgaatca ttgtcatcaa tgtggtggga
     7681 aactggaaca aggcacaatg gaaatgagtc tagctgaaaa gctgacattg caaggtatta
     7741 atcaggtact cgaaaaagat tcaggcatct gttttggata caaggtgtcg ggtaaggtgt
     7801 ggtttgatat gctccgctac tgcatcaact tattgagacg tgcatcagac agaccaaatc
     7861 atgccttagc aaaatttgta gttaatctac agattgatgt tgaaaatata tgtagcccca
     7921 aaacaggact ttcttttgaa caacttccgc taggtgaacg tacaaattta cttgtgaatg
     7981 cctatcatat tttgggaatg gaagcagatt ctattcgtag tgcaatttat ttgtgtggcg
     8041 gaacacaaaa aacctttatg tttgaaaaat atcctgattt ttggcaagaa tttatggcac
     8101 tagcacccgc aggcccaaat agaacacgaa aacgcaccaa gccccaaaat gagtctatca
     8161 cagcaattaa tcgccgttgg gagcgtttga aacgcaaact acacttaaat aacgaatgaa
     8221 aattaatgta ataaaaccac aggaagaacc ttgctccgct tgtggcaaaa tttctcgcat
     8281 ttggcgcaga tataatggcg aaggctactg tgccaattgc tatgctaagt ggtttccgaa
     8341 aaaagagtgc agctgttgcc atcaaccaaa gcgtatctat ttgagttcaa cagtatgttg
     8401 ggattgcgaa aaacagactg actgtgtacg ttgcggtaag gctgcgggta cattcaaaat
     8461 tggtaaaatt acccgttatg gtgcagtttg taatgtgtgt tcacgttatt ttcgtgaaga
     8521 acgagaatgt tttgagtgtg gtcaactatc tagaactatg cttcgagcat cagagtcagg
     8581 tcatagcgag ctactctgct tgaagtgttt tcaaaaatat cggtttgcga cttgtaaaaa
     8641 ctgtcgccgt tatcgcaaag ttcatgaccg tgataatcag ctttgtcgaa aatgtagtga
     8701 gcaacgaact tcacaatgcc cgaagtgcaa acaggatatg cctgcgggat atggtaatat
     8761 ttgtgcagat tgttctaggc gaactctact gttcaacctt attcgaatga atgtgcattt
     8821 attccgccac aaaaaagtga aaagagcata taaaaagttc attttttggt atctcgcaaa
     8881 gtgtggcgtg agtgttgtgc tgaaaaaatc agacgaccac gtcctctttt ttatgcgttg
     8941 cgatgaaaat tggggcaaca ttccagacta ccgtgagttg gttacattct ttaaacccaa
     9001 tggattacgg acgcatttga ctgtgttgcg ttggttgctt gataccaatc aagtcaaagt
     9061 agatgagagc ttaaaagagg aaatggcggg gttggaacgt attcaatccc tatttaacaa
     9121 attaagtaac tctgtacctt gtattgcaaa ctactacacg cagttacaac ataaatatga
     9181 ggcgggcaaa acatcactga aatctgttcg attagcttta caacctgcga ttgatttcat
     9241 cagttcagaa tctgtctcgt tactgccgac tcaagtacaa ctgaatagct atcttgtggc
     9301 aaaaacggga cagattgctg ctattacagg ctttataaac cacctgaacc gagaatatca
     9361 ttgtgaatta gaaattgacc gctccctcat tcaaaagatg aaagaaaagc agttgaagca
     9421 gcaagcaaaa cagcgattag cgatactcta caagcaagaa aaactaagta tcaaagagca
     9481 aaatgagcta ctctcagtcg tattactgaa tttgcacaac atttggataa aatcaccgaa
     9541 aaaattaagt atttcagaga tagacggtat agcctactat gttgataatg agaaaaaata
     9601 ctttatacca aaagacattc acatacgcct gatggaataa gctgtcgtca atttttattt
     9661 ttgcgatctg tgtcgagaaa ataatattta tgaatcgaca gatgaaataa tattgataaa
     9721 gtctctttgt gtgttcaaca aacaggagat aaatatgaca ttaaaggctc aatttcgtga
     9781 atggcttaaa aaagagcaag aacatgatga aatgataggg ttcgcccata tcccttgcat
     9841 tttatctaaa gtggatagca aactggcgat tgttagcgga aatgcttatg agaagaaata
     9901 tctcagatat tggatcaagt gttttaggtt cgatagaaat atcagcaagt atattaaata
     9961 ggttaaatat ctagct
//
LOCUS       DANLRW010000091         9726 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.092, whole genome shotgun sequence.
ACCESSION   DANLRW010000091 DANLRW010000000
VERSION     DANLRW010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9726
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.092"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            55..735
                     /locus_tag="PXA71_001946"
     CDS             55..735
                     /locus_tag="PXA71_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00153 family protein"
                     /protein_id="HDL5106027.1"
                     /translation="MALNNILGLFAQSPLKPLQKHSNKVTECSELLESFFEATFEHDW
                     EKAAEVRGKIVDLERRADALKREIRLKLPRGLFMPVERGDLLELVTQLDKLANYSRDI
                     SGRIIGRKLIIPTEMQPLFKKFLSRSIDASRQVRKVLDEMDQLLETGFRGRELDFVNK
                     MILELDQIEDDTDQYQITLRHTLLELEKNLNPIDVMFLYKCIERISVLADQAQRIGSR
                     IELMLAKS"
     gene            747..2015
                     /locus_tag="PXA71_001947"
     CDS             747..2015
                     /locus_tag="PXA71_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDL5106028.1"
                     /translation="MELLNQYGSILVIITAIVGFMMAFGIGANDVSNAMGTSVGSGTI
                     TIKQAILIAMVFEFAGAYLAGGEVADTIKSGIIDPAQFANSPDILVLGMMASLCAAGM
                     WLIIATKMGWPVSATHTIIGAVIGFALITIGSDAIQWDALGGIVGSWFVTPILAGIVA
                     YSIFINSQKLIFNRSNPFKQAKKYGPMYMGITIFILVIVTVSKGLKHVGLHLDTAETL
                     GISFALALLAFIIGYFYFRSKSFAMKARAEEKGFAGVEKIFSILMLITACAMAFAHGS
                     NDVANAIGPLAAVESIVRSGGMIEGKTTLAPWILPLGALGMMIGLAIMGKNVMATVGT
                     GITDLTPSRGFAAQFACAVTVVIASGTGLPISTTQTLVGAVLGVGFARGIAALNLGVI
                     RNIVISWVITLPVGAVLSIIIYYILSAIFY"
     gene            2070..2681
                     /locus_tag="PXA71_001948"
     CDS             2070..2681
                     /locus_tag="PXA71_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HDL5106029.1"
                     /translation="MKKLSSALLSCFLLGLSSPALTADTYITENLSTFMRKGAGDQFR
                     ISGAIQAGEKVTVLDRKERYSLIRDSRNREGWVLNSDLSDTASPKELIPQLKQQVQDL
                     TNRLSKIDTEWQQRTAEMQRRTQDSVQKSSDLVEENAQLKRELEILKNKNRDLETMHD
                     SEKREIVIQWFIYGGAVLGAGLLLGLLVPFLIPRRRRNNSGWA"
     gene            complement(2735..4033)
                     /gene="aroA"
                     /locus_tag="PXA71_001949"
     CDS             complement(2735..4033)
                     /gene="aroA"
                     /locus_tag="PXA71_001949"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDL5106030.1"
                     /translation="MEKLTLTPISRVEGEINLPGSKSLSNRALLLAALATGTTQVTNL
                     LDSDDIRHMLNALKALGVKYELSDDKTVCVVEGIGGAFKVQNGLSLFLGNAGTAMRPL
                     AAALCLKGEEKSQIILTGEPRMKERPIKHLVDALRQVGAEVQYLENEGYPPLAISNSG
                     LQGGKVQIDGSISSQFLTALLMSAPLAEGDMEIEIIGDLVSKPYIDITLSMMNDFGIT
                     VENRDYKTFLVKGKQGYVAPQGNYLVEGDASSASYFLASGAIKGKVKVTGIGKKSIQG
                     DRLFADVLEKMGAKITWGEDFIQAEQSPLKGVDMDMNHIPDAAMTIATTALFAEGETV
                     IRNIYNWRVKETDRLTAMATELRKVGAEVEEGEDFIRIQPLALENFQHAEIETYNDHR
                     MAMCFSLIALSNTEVTILDPNCTAKTFPTYFRELEKLSVR"
     gene            complement(4079..5173)
                     /locus_tag="PXA71_001950"
     CDS             complement(4079..5173)
                     /locus_tag="PXA71_001950"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL5106031.1"
                     /translation="MQFINIANEGVKSLSPYQAGKPIEELERELGIQNIIKLASNENP
                     FGFPESAKKAILNQLDDLTRYPDSNGFELKTTIAQKFGVQANQITLGNGSNDLLELFA
                     HTFAGEQDEIIYSQYAFIVYPLVTKAINAVAREILAKNWGHNLDAFLAAITEKTKLIF
                     IANPNNPTGNFLTQAEIEGFLAKVPANVIVVLDEAYTEFTAPQERVDSFGLLAKYPNL
                     IVSRSLSKAYGLAGLRIGYAVSNPEIADLLNRVRQPFNCNSLALASAIAVMNDDEFVK
                     KVAENNRLEMARYEAFCQANGLEYIPSKGNFITIDFKRPAAPIYEALLREGVIVRSIA
                     GYGMPNHLRISIGLPQENERFFTALLKVLA"
     gene            5445..6764
                     /locus_tag="PXA71_001951"
     CDS             5445..6764
                     /locus_tag="PXA71_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HDL5106032.1"
                     /translation="MNHLLYSVEDKPPFGLSLLLASQHLLAALGGIIAVPLVLGNVLK
                     LSTADTIILVNAALLISGIVTIIQCRGIGPIGIRLPSVMGTSFTFVAAALAIGFSESG
                     IAGIMGASLVGSLVMIIGSFFMPYIRKLFPPVVTGTVIMMIGLSLIPVAVDWFAGGQR
                     TDPHYATPENLIMASFVLIIVVALVQWGKGIFSAAAIVIGMMIGYIVSLALGWVSFNG
                     VKEAQLFALPQPLHFGLEFPISGIIGMSIAYLVTIVESSGNFLALGNATKTEITGKHL
                     RGGVLCDGLGSAFAAIMSTTPFSSFSQNIGVISLTGVASRYVVAFTGALLVLAGLFPV
                     FGALIVSIPLPVLGGAGLMMFAMIIAAGIQMLDNIQRSKRNGLIIAISIGCGLAVTTR
                     PELLDKLPHFFKEVFGSGITVGSLLALILNLVLPEDKITKKENKSDE"
     gene            complement(6934..8877)
                     /gene="ftsH"
                     /locus_tag="PXA71_001952"
     CDS             complement(6934..8877)
                     /gene="ftsH"
                     /locus_tag="PXA71_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDL5106033.1"
                     /translation="MVKNILLWVVIAIVMMTAYEGFNSNFSGSSNTVPYSTFLSDIKE
                     NRLKGVDFKQNDDTILVTKNDGATYQTVMPMYDEYLMADLAKTNAVITGQPAERRGLL
                     SQILISWFPMLLLIGFYVFYMRQMQGGGGRGAMGFGKNKAKMLTADEVKTRFSDVAGC
                     DEAKEEVGEVVEFLRDPTKFQKLGGRIPKGILMVGPPGTGKTLLAKAIAGEARVPFFT
                     MAGSDFVEMFVGVGASRVRDLFDQAKKNAPCIIFIDEIDAVGRKRGGAGFSGGHDERE
                     QTLNQMLVEMDGFEGSEGVIIIAATNRADVLDDALTRPGRFDRQVTVDLPNVKGREQI
                     LKVHLKKVPLAEGVDPMQIARGTPGYSGAQLANLVNEAALFAARKNKRVVMMEDFEEA
                     RDKINMGPERRSNTMTEKEIINTAYHEAGHVIVGYLMPEHDPLNKVTIVPRGQALGFA
                     QFLPEGDRVSETFTKLESQLSTLFAGRIAEGLIFGEDKITTGASSDIHRATQIARAMV
                     TQWGFSKELGPIFYQNEDGMGAIKGVSEESQKLIDVEMRKIIDRNYQRAKQTLEENMD
                     ILHAMKDALLKYETLDSKQIDDLMARRPVGEPSGWTDTPTKDDNATPPSGEQAADVSS
                     TLEDNPNKDNNIGDSLADTKAEH"
     gene            complement(8998..9624)
                     /gene="rlmE"
                     /locus_tag="PXA71_001953"
     CDS             complement(8998..9624)
                     /gene="rlmE"
                     /locus_tag="PXA71_001953"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011200140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HDL5106034.1"
                     /translation="MGRKRSASSSRWLAEHFKDQFVQKAHKQKLRSRAYFKLDEIQQT
                     DRLFKPGMTVVDLGAAPGGWSQYVVTQIGSKGRVIACDILDMNPIVGVDFLQGDFREE
                     SVLNALLERVGEDKVNVVMSDMAPNFSGMPSVDIPRAMYLVELALDMCRQVLATKGSF
                     VVKVFQGEGFDEYLREIRSLFSVVKVRKPEASRDRSREVYIVATGYKG"
BASE COUNT         2720 a         2083 c         1895 g         3028 t
ORIGIN      
        1 gccggacttt acagtaagaa gtcattgtca atattatcac tatggagata ttttatggca
       61 ttgaataaca ttttaggttt attcgcccag tccccactta aaccgttaca aaaacactca
      121 aataaagtga ctgaatgtag cgagttatta gaatcttttt ttgaagcgac ttttgaacat
      181 gattgggaaa aagcagctga agtgcgcggt aaaattgttg atttagaacg ccgcgcagat
      241 gcccttaaac gtgaaatccg cttaaaactg cctcgtggtt tatttatgcc agttgaacgc
      301 ggtgatttat tagaactagt cacacaatta gataagttag caaactattc aagagatatt
      361 tccggtcgca ttattggtcg taaattaatc attcctaccg aaatgcaacc acttttcaaa
      421 aaattccttt ctcgtagtat tgatgctagc cgtcaggtac gcaaagtttt ggatgaaatg
      481 gatcagttat tagaaactgg ttttagaggg cgagagcttg atttcgtcaa taaaatgatt
      541 cttgaacttg accaaattga agatgatacc gaccaatatc aaattacatt acgtcataca
      601 cttcttgagt tagaaaaaaa cctgaaccct attgatgtga tgtttttata caaatgtatt
      661 gaaagaatca gcgttctagc tgaccaagcc cagcgaattg gttctcgtat tgaacttatg
      721 ctggcgaagt cataggagaa aattaaatgg aattactcaa tcaatatggc tcaatactgg
      781 tgattattac tgctattgta gggtttatga tggctttcgg tattggtgct aatgatgttt
      841 caaatgccat gggaacatcc gtcggctctg gaacaattac gattaaacaa gctattttaa
      901 ttgctatggt atttgaattt gctggtgctt atctggcagg cggtgaagtc gcagatacaa
      961 ttaaaagtgg cattattgat ccggcacaat tcgccaatag ccctgatatc ctggtacttg
     1021 gaatgatggc atctctctgt gctgccggaa tgtggctaat tattgcaact aaaatgggtt
     1081 ggccggtttc agcaactcac acaatcattg gtgccgttat tggttttgca ttaatcacta
     1141 ttggttcaga tgcaattcaa tgggatgcat taggtggaat tgttgggagt tggtttgtga
     1201 cccctattct tgcggggatc gtagcatatt cgatctttat taactcacaa aaactgatct
     1261 ttaaccgctc aaacccattc aaacaagcga aaaagtatgg cccgatgtac atgggaatta
     1321 ctatttttat tttagttatt gtaaccgtgt caaaaggctt aaagcacgta ggattacatc
     1381 tagatacagc tgaaacattg ggaatttcat tcgcgcttgc cttacttgct tttatcattg
     1441 gatattttta tttccgcagt aaaagctttg caatgaaagc tcgtgcagaa gagaaaggct
     1501 tcgctggcgt tgagaaaatt tttagtattt taatgcttat tacggcctgt gctatggctt
     1561 ttgctcatgg ctctaatgat gttgctaatg ctattgggcc tctagctgct gttgaatcta
     1621 ttgtaagaag tggtggaatg attgaaggta aaacgacttt agccccttgg attctcccac
     1681 taggcgcctt aggtatgatg attggtttag ctattatggg caagaatgta atggctacag
     1741 taggtactgg tattaccgac cttactccaa gccgtggctt tgctgctcaa tttgcctgcg
     1801 ccgtcacggt tgtcattgca tcaggtactg gtttaccaat atcaacaacc caaacgcttg
     1861 taggagcagt attaggtgtg ggattcgccc gtggtattgc tgcacttaac ttaggcgtta
     1921 ttcgtaatat tgttatatca tgggtaatta ccttgcctgt aggtgctgtg ctttcaatta
     1981 ttatctatta tattttaagc gctattttct attaattttt caaaaagaat acaggcaact
     2041 gtattcttcc tagctttaga ggaatatata tgaagaaatt atcatcagct cttctgtctt
     2101 gttttttact cggcctatct agccctgctt taacggcaga cacttacatt actgaaaatc
     2161 tgagtacatt tatgcgcaaa ggtgctggtg atcaattccg catttcaggc gctattcaag
     2221 caggtgaaaa agtcacagta ttagatcgta aagagcgcta cagtctgatt cgagatagtc
     2281 gtaaccgtga aggttgggta cttaattcag acttaagcga tactgctagt ccaaaagagc
     2341 tgattcctca attaaaacaa caggttcaag atttaaccaa tcgcctgagc aaaatcgata
     2401 ccgaatggca acaacgtacc gcagaaatgc aacgtagaac gcaagattca gtgcagaaaa
     2461 gcagtgattt ggttgaggaa aatgcacaac taaaacgtga actggaaatc ctgaaaaaca
     2521 aaaatcgtga tttagaaaca atgcacgatt ccgagaaacg tgaaatcgtg attcagtggt
     2581 tcatctatgg tggtgctgtg ttaggcgcag gtttactact tgggttactc gtgcctttcc
     2641 tgatccctcg ccgcagacgt aacaacagcg gttgggctta gtctgccaca ataaaacgta
     2701 aaaaggattc agttttctga atcctttttt acttttatct gaccgataat ttttccaact
     2761 ccctaaagta agtcgggaac gttttagcgg tacaatttgg atctaagatc gtcacttctg
     2821 tattcgataa cgcaattaat gaaaaacaca ttgccatacg gtgatcgtta taggtttcaa
     2881 tttcagcgtg ctggaagttt tctaacgcaa gcggttgaat ccgaataaaa tcttcccctt
     2941 cttctacctc tgccccgact ttacgcaatt cggttgccat tgctgtcaag cggtcggttt
     3001 cttttacccg ccagttataa atattgcgga taactgtttc tccttcggca aataaagcgg
     3061 ttgttgcaat cgtcattgcc gcatcaggaa tatgattcat atccatatct acgcctttta
     3121 gcggggattg ctcggcttga ataaaatcct ctccccaagt gatttttgcc cccatttttt
     3181 ccaacacatc ggcaaacaag cggtcgcctt ggatcgattt tttaccaatg cccgttactt
     3241 ttaccttgcc tttaatcgca ccggaggcta agaaataaga ggcagaagag gcatctccct
     3301 ccaccaaata attaccttgt ggagcaacat agccttgttt acctttaact aaaaaggttt
     3361 tgtaatctcg attttcaacc gtaataccaa aatcgttcat catcgaaagg gtaatatcaa
     3421 tataaggttt tgataccaga tcaccgataa tctcaatttc catatcgcct tccgctaatg
     3481 gggcagacat cagcaatgcg gttagaaatt ggctggaaat cgagccgtca atttgcactt
     3541 ttccgccctg caaaccgcta ttgctaattg ccaacggtgg atagccttca ttttctaaat
     3601 actgtacctc tgcccctact tggcgtaaag catcgactaa gtgtttaatc gggcgttctt
     3661 tcattcttgg ttcaccggta agaatgattt gggatttttc ctcacctttt aaacacaatg
     3721 ctgctgcaag tggtcgcatt gccgtgcctg cattgccgag aaacagtgat aagccgtttt
     3781 gaaccttaaa agctccacca atcccttcaa ctacacagac ggttttatcg tccgatagct
     3841 catatttcac gcctaacgct tttaaggcat tgagcatatg tcgaatatca tcactatcta
     3901 ataaattggt cacttgagtc gtaccggtgg ctaaggcggc taataataag gctcggttag
     3961 acaggctttt agaaccaggt aaattgatct cgccttctac tcgggaaatc ggggttaaag
     4021 ttagtttttc catttttctc tttaaatttg taaaattttc ataaaaggta accgcttgtt
     4081 aagctaacac tttcaataag gcagtaaaaa atctctcgtt ttcttgcggt aaaccgatac
     4141 taatgcgtaa atgattcggc attccataac ctgctatcga gcgaacaatc acgccttcac
     4201 gcagtaatgc ctcataaatc ggagcggcag gacgtttgaa atcaatagta ataaaattgc
     4261 ccttagaagg gatatattcc aagccgtttg cttggcagaa agcctcatag cgagccattt
     4321 ccaagcggtt attttctgcc acttttttga caaattcatc atcattcatt accgcaatcg
     4381 ctgaagctaa ggcaagacta ttgcagttaa acggctggcg aacacgattt aataaatccg
     4441 caatttcagg gtttgaaacc gcataaccaa tccgaagccc ggctaagccg taagccttag
     4501 agagtgaacg tgacacaatt aaattcgggt attttgccaa taagccaaac gaatccaccc
     4561 gttcttgagg cgcagtaaac tcggtataag cttcgtccag caccacgatt acatttgccg
     4621 gcactttagc taaaaagccc tcaatttccg cttgggttaa aaaattaccg gtcggattat
     4681 tcgggttggc aataaaaatt aatttagttt tttcggtaat tgcagccaaa aaggcatcta
     4741 aattgtgtcc ccaattttta gccagaattt cacgggcaac ggcattaatc gctttcgtca
     4801 ccaacggata cacaataaac gcatactgag aatagataat ttcatcttgc tcaccggcga
     4861 aggtgtgggc aaacagctct aataaatcgt ttgagccatt gcctaaggtg atttgattgg
     4921 cttgtacgcc aaatttttgg gcaatagtgg tttttaattc aaagccgttt gaatccggat
     4981 agcgggttaa atcgtcaagc tgattcagaa tcgccttttt tgcactttca ggaaaaccaa
     5041 atgggttttc gttcgaggct aatttaatga tattttgaat ccctaattca cgctctagct
     5101 cctcaatcgg ctttcctgct tggtaaggcg aaagggattt cacgccctca tttgcgatgt
     5161 tgataaattg cataataacc tctgattatt cttataaaat ataagttcgg attgtagtaa
     5221 agaatgattg cctttaccag taaatttttt gttacaactg gaaagaaatt ggtacaaaca
     5281 ttcggattag ctttgcaaaa agcgtaaaaa atcttaccgc ttgtcattta tcagttaggg
     5341 aaaataaaaa atcactctct tatataaaaa caattacgca aacgattgct tattaaaaaa
     5401 acttcagtat aatgccgaca ttttttaact ctcgaggaat cactatgaac catttacttt
     5461 attctgtcga agacaaaccg cctttcgggc tgagcttatt gcttgcctca caacatttat
     5521 tagccgcttt aggtggcatt atcgctgtac ctttagtgct agggaatgta ctcaaactct
     5581 ctactgcgga tactataatc ttagttaatg ctgcactttt aatttcaggc atcgtcacta
     5641 ttattcaatg tcgaggtatt ggcccaatcg ggattagact accgagtgta atgggaacta
     5701 gctttacgtt tgttgcagca gcattagcga ttggtttcag tgaaagtggc attgccggca
     5761 ttatgggagc ctctttagtt ggctctctag tgatgattat cggcagtttt tttatgcctt
     5821 atatccgtaa gctttttcca cccgtggtaa caggtactgt cataatgatg attggcctaa
     5881 gtttaattcc tgttgcagta gactggtttg ctggtggtca gcgtactgat ccacactatg
     5941 caaccccaga aaatcttata atggctagtt ttgtattaat tattgtcgtt gctttagtac
     6001 aatgggggaa aggtattttt tcagctgctg ctattgtgat tggtatgatg ataggttata
     6061 tcgtttcgct agctctgggt tgggtaagtt ttaatggcgt gaaagaagca caactttttg
     6121 cgttaccaca acctctacat tttggcttag aatttccaat ctccggtatc atcggaatgt
     6181 caattgctta tttagttacc attgtagaat ctagcggaaa tttcttagca ctaggcaatg
     6241 caactaaaac tgaaattacc ggaaaacact tacgtggagg tgtattatgt gatggtttag
     6301 gctcagcatt tgcggcaatt atgtccacaa ctcccttttc ttctttctca caaaatattg
     6361 gggtcatttc attaaccggt gtagccagtc gctatgttgt agcatttaca ggcgcattac
     6421 ttgtactagc cggtttattt cctgtatttg gagcattaat cgtgtctatc ccgttacctg
     6481 tgcttggcgg tgcaggctta atgatgtttg ccatgattat cgcagccggt atccaaatgt
     6541 tagataatat tcaacgtagc aaacgaaacg gtttaattat tgctatctct atcggttgtg
     6601 ggctggccgt aacaactcga cctgagctat tggataagct tccacacttc tttaaagaag
     6661 tttttggctc aggtattacg gtcggctcct tattagcact tattttgaat ttagttttac
     6721 ctgaagataa aataaccaag aaagaaaata agagtgatga ataaatcacc ctaaaaaaac
     6781 aaggacagct cacaatacaa ctttgatgct gtcctttatt cccatagaga gcatatttaa
     6841 atttaggtta ataaaaaaat ctgcactcta tattggtgtt tacctttaga gtacagattt
     6901 cttcttattc taactttcta gcaaacaatt agattaatgt tccgctttgg tatcggctaa
     6961 cgaatcccca atgttattat ctttatttgg attatcctct aaagttgaac ttacatccgc
     7021 tgcctgttca ccacttggtg gagtggcgtt atcgtcttta gttggggtat ctgtccaacc
     7081 tgatggttca cccaccggac ggcgtgccat taaatcatca atttgcttgc tgtctaaggt
     7141 ttcgtatttc aataaggcat ctttcattgc gtgtaagatg tccatatttt cttccaaagt
     7201 ttgcttcgct cgttgatagt tgcggtcaat gatcttacgc atttccacat caatcaattt
     7261 ttgcgactct tccgatacgc ccttaattgc acccattcca tcttcatttt gatagaaaat
     7321 cgggcctaat tcttttgaga agccccattg agtaaccatt gctcgtgcaa tttgggttgc
     7381 tcgatgaata tcagaggaag cccctgtggt aattttatct tcaccaaaaa tcaagccctc
     7441 agcaattcgc cctgcaaata gggtggaaag ttggctttcc aatttggtaa atgtttcgct
     7501 tacacggtca ccttccggta agaattgagc aaaacctaac gcctgaccac gaggcacaat
     7561 tgtcacttta ttcagcggat cgtgttccgg cattaaatag ccaacaataa cgtgtccagc
     7621 ttcgtggtaa gcagtattga tgatctcttt ttccgtcatt gtatttgaac ggcgttccgg
     7681 ccccatattg attttgtcac gggcttcttc gaaatcttcc atcattacca cacgtttatt
     7741 cttacgggca gcaaataagg cagcttcgtt caccaagttt gctaattgag caccagagta
     7801 acccggcgta ccacgagcaa tttgcatcgg gtcaactccc tctgcaagcg gtactttttt
     7861 caagtgaact ttcaaaattt gctcacgccc tttcacgttc ggcaaatcga ccgtgacttg
     7921 gcggtcgaaa cgccccggac gagttaaggc atcatctaac acatcggcac ggttggttgc
     7981 agcgatgata atcacacctt cagagccttc aaagccgtcc atctcaacta acatttggtt
     8041 gagggtttgt tcacgctcat cgtgtccacc gctgaaacct gcaccaccac gtttacgccc
     8101 taccgcatca atttcatcaa taaaaataat acaaggggca tttttcttgg cttggtcgaa
     8161 taaatcacgc acccgtgaag cacccacacc tacaaacatt tccacgaagt cggaacctgc
     8221 cattgtaaag aatggcactc gtgcttcacc tgcaatcgct ttcgccaata aggttttacc
     8281 cgtacccgga gggcctacca tcaagatccc ttttggaatg cgcccaccta atttttgaaa
     8341 tttagttggg tcacgcaaaa actcaacaac ttcgcctact tcttctttgg cttcatcaca
     8401 gccggctaca tcagaaaatc tggtcttaac ttcgtctgcg gtcaacattt tggctttatt
     8461 tttcccaaag cccattgcac cacgtcctcc gccaccttgc atttgtcgca tataaaacac
     8521 atagaaaccg attaacagca acattgggaa ccaagaaatc aaaatttgcg agagcaagcc
     8581 acgacgctca gcaggctgac cggtaatcac tgcattggtt tttgctaaat ctgccattaa
     8641 gtactcatca tacatcggca ttacggtttg gtaggttgca ccatcatttt tcgtcaccaa
     8701 aatggtgtca tcattctgtt tgaaatcgac cccttttaaa cgattttctt taatatcgct
     8761 taaaaaagtc gaatatggca ctgtatttga gctaccactg aaattagaat taaaaccttc
     8821 ataggctgtc atcatcacaa tggcaatcac cacccaaagt aaaatatttt taaccatatc
     8881 gttcaaggtt aatcccctat ctgctgaata aaaaactgtt caagattact ataaaagcgg
     8941 tcgaattttc caattttttt gcaaaatgtt aataaaaaat gaccgcttgc ttgttttcta
     9001 gcctttataa cctgtcgcta caatataaac ttctcgagac cgatctcgag acgcctccgg
     9061 ttttctgact tttaccacac taaagagcga gcggatttct cgaaggtatt catcaaatcc
     9121 ttcgccttgg aataccttaa ccacaaaact gcctttggtt gctaatactt ggcgacacat
     9181 atccaatgcc aattccacta aatacattgc acgaggaata tcaaccgacg gcataccgct
     9241 gaaattggga gccatatccg acatcaccac attcactttg tcttcgccta ctcgctcaag
     9301 taacgcattc agcaccgatt cttcacggaa gtcgccttgt aagaaatcca cgcctacaat
     9361 cgggttcata tctaaaatat cacaagcgat tactctgccc ttactgccga tttgcgtcac
     9421 cacatattgc gaccaaccgc ccggtgcggc accgagatcc accaccgtca ttcccggttt
     9481 gaataaacgg tcggtttgtt gaatttcatc taacttaaaa tacgcccgtg aacgcaattt
     9541 ttgtttatgt gctttttgca caaattgatc tttaaaatgt tctgcaagcc aacgtgatga
     9601 actcgcactt cgttttctac ccatttgttc ttctatctta attaattcaa cgatttataa
     9661 taagggttaa attagcaaat tcaagagatg ttctaaaatt tagctcggct tattatgctt
     9721 aattaa
//
LOCUS       DANLRW010000092         9516 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.093, whole genome shotgun sequence.
ACCESSION   DANLRW010000092 DANLRW010000000
VERSION     DANLRW010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9516
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.093"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            108..2174
                     /gene="glyS"
                     /locus_tag="PXA71_001954"
     CDS             108..2174
                     /gene="glyS"
                     /locus_tag="PXA71_001954"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005693270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HDL5106035.1"
                     /translation="MTTQNFLAEIGTEELPPKALKKLATAFAENVENELNQAGLSFEK
                     VEWFAAPRRLAVKVLSLAESQPSKEVEKRGPAVSAAFDAEGKPTKAAEGWAKGCGITV
                     EQAERIATDKGEWLVHRAVIEGQPTKNLLVDIIAKSLANLPIPKTMRWGDKTEQFVRP
                     VHTVTLLFGAELIEGEILGVKSGRTIRGHRFLGEREFQIENADQYPQLLKDRGSVVAD
                     FNERKALILAKSQEKATALGGVADIEEDLLDEVTSLVEYPNVLTAKFEERFLAVPAEA
                     LVYTMKGDQKYFPIYSKDGKLLPHFIFVSNINPEDPSKIIEGNEKVVRPRLTDAEFFF
                     KTDLKQKLEDQLPRLETVLFQQQLGTLRDKTARIEALAGEIAKQIGADETKAKRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEDEEVAVALNEQYMPRFAGDNLPNSLVAC
                     SVALADKFDTLTGIFGIGQAPKGSADPFALRRAALGSLRIIVEKNLPLDLTDLVAKSA
                     QLFGDKLTNKDVVEDVVDFMLGRFRAWYESEGIAVDVIQAVLARRPTKPADFDARVRA
                     VSHFRTLDSAEALAAANKRVSNILAKADIAIGDIDVSACVEPAEKALAEAVIALKAEV
                     QPLIAQGDYTAVLDKLANLRQPVDAFFDGVMVNAEDQKLRQNRLAILSTLQGLFLQVA
                     DISLLQ"
     gene            complement(2279..3580)
                     /locus_tag="PXA71_001955"
     CDS             complement(2279..3580)
                     /locus_tag="PXA71_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HDL5106036.1"
                     /translation="MNIHCEKLVQSILHAVNHEVVPALGCTEPISLALASAIARQYLG
                     HLPERIEAKVSPNLMKNGMGVAVPGTATVGLPMAAAIGAIGGEPDGGLEVLKNITPEQ
                     VKQAKAMLNTDKVSVSIFETEHILYSEATLFHQANRVCVRIAEHHTNVIYIEKNGQTI
                     LSKPCAVNNDNTTEIFASLSAKDIFNFSMQIELEKIRFIEQAAQLNSALSQEGLRADY
                     GLHIGRTLQKQIGLGLISDDLLNRIVIETTSASDARMGGASLPAMSNSGSGNQGITAT
                     MPIVVVARHLNVTDEQRIRALFLSHLMAIYIHSKLPKLSALCAVTTAAMGSCAGIAWL
                     LTGKFENISMAISSMIGDISGIICDGASNSCAMKVSTSVTSSYKSILMSMDNSQVTGN
                     EGIVEHDIDRSINNLCSIASRSMQYTDRQVIEIMVNKPKLK"
     gene            complement(3594..4871)
                     /locus_tag="PXA71_001956"
     CDS             complement(3594..4871)
                     /locus_tag="PXA71_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106037.1"
                     /translation="MDTQKLSPAEFKQATKFDSTDFGWIIMSIGMAIGAGIVFLPVQV
                     GLMGMWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPTVISGYLGKNWGIFLGVL
                     YFIMLVIWMFVYSTAITNDSASYLLTFGITNTLLSDNPFYGLVLICILVALSSRGEKL
                     LFKISTFMVLTKLFVVAALGLAMIGMWQLHNIGAMPPFGKLIKDAIITLPFTLTSILF
                     LQTLSPMVISYRAKEQSREVARYKALRAMNIAFAILFITVFFYAVSFTLAMGREEALK
                     AYEQNVSALAIAAQFFPGSWATYVGVALNIFAVMTAFFGVYLGFREATQGIVMNLLLR
                     KFPAEKINPNYVQKGIMLFSILLAWSAIVLNAPVLSFTSICSPIFGLVGCLIPAYLVY
                     KVPALFKYKGLALNIIIITGILLCISPFLTFLE"
     gene            complement(4900..5568)
                     /locus_tag="PXA71_001957"
     CDS             complement(4900..5568)
                     /locus_tag="PXA71_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HDL5106038.1"
                     /translation="MPDKLEYLHDLDKEIMLSYFSLSEAIAGLLGEFCEVVIHSLNAY
                     EKSVIKIINGHHTNRKIGSPITDKGLQLLKCYQKDQSNTELVYFSRLNNGNLVKSTTH
                     IIIGHEGKPIGLFCINLNLSTPLDKTVSSFMNYDPIPPHYKSENFITHPKELIEETFL
                     KAVTHIEQHTTKHSKLYKKSIIFYLFENGIFELKEAVPIVAEKLSLTSHAIYKHLREF
                     KNNT"
     gene            5802..6092
                     /locus_tag="PXA71_001958"
     CDS             5802..6092
                     /locus_tag="PXA71_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5377 domain-containing protein"
                     /protein_id="HDL5106039.1"
                     /translation="MSVKTEVLFSNHWNVRVSDPGFEGSPSHYFETVYLTLEAFINGE
                     NVHYEFTRKVEQEVKTHRSFTDVNELFEFLGEYLSPVALGNVGVRIGQLGLA"
     gene            6159..7070
                     /gene="xerC"
                     /locus_tag="PXA71_001959"
     CDS             6159..7070
                     /gene="xerC"
                     /locus_tag="PXA71_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HDL5106040.1"
                     /translation="MTTSNPLFQQTRPYWDFLRIEKQVSPHTLSNYQRQLMAVSELFS
                     QAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLVALRQWFVYLIKIGRMSANPTL
                     GVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAMMELMYSSGLRLSELQGLDL
                     GDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQFKPQDNAVFLNKRGGRL
                     SHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSSLSTTQ
                     IYTHLDFQHLAKIYDSAHPRARRKQED"
     gene            complement(7067..7438)
                     /locus_tag="PXA71_001960"
     CDS             complement(7067..7438)
                     /locus_tag="PXA71_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HDL5106041.1"
                     /translation="MKYLYIICGFICIGLGIIGAVLPGLPTTPFLLLALFCFTKGSER
                     IRQWFIQTKLYKKYLQEYDEKRAMTMKQKITILAISFPFTLFAFFALPHIGGKIALVV
                     LVIIQYWYFFCKMKTLEPENA"
     gene            complement(7594..7683)
                     /locus_tag="PXA71_001961"
     tRNA            complement(7594..7683)
                     /locus_tag="PXA71_001961"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7647..7649),aa:Ser,seq:tga)
     gene            complement(7775..8866)
                     /gene="trmA"
                     /locus_tag="PXA71_001962"
     CDS             complement(7775..8866)
                     /gene="trmA"
                     /locus_tag="PXA71_001962"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HDL5106042.1"
                     /translation="MTLPIEQYSDLLAKKTENLTALLKPFNPPAIEVFASKPSHFRMR
                     AEFRVWHEEGELYHIMFNPETKARYRVDSFPIASELINHMMTALLAEIKGNELLTRKL
                     FQIDYLSTLSGEIAVSMLYHKSLNEEWVEQANALKSRLEQQGFKVQIIGRANKQKIAL
                     DCDYVEEILPVHGKNYVYRQVENSFTQPNAEMNIKMLEWARNCTKNSEGDLLELYCGN
                     GNFSIALAENFRKVLATEISKSSVQSAQYNIEKNGIVNLQIIRMSAEEFTQAMNGVRA
                     FYRLKGIDLNAYECNTIFVDPPRAGLDQATLNMVQAYERILYISCNPETLAENLQQLS
                     QTHRIEKAALFDQFPYTHHIESGVWLIRK"
     gene            complement(8931..9263)
                     /locus_tag="PXA71_001963"
     CDS             complement(8931..9263)
                     /locus_tag="PXA71_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF413 domain-containing protein"
                     /protein_id="HDL5106043.1"
                     /translation="MADSFSVTRRFFDDKNYPRGFSRHGDYTIRESQTLEQFGQACLA
                     LESGERKPATQEEKRFVAVMKGEEVAETDIEKAWLKYRTLTSKTKRIYTLSGNAGSDA
                     GDDFSAAE"
BASE COUNT         2824 a         1858 c         2107 g         2727 t
ORIGIN      
        1 gacatcaaaa ttaggaaatt agctagagag ctttataatg aaaatatagc acaattagaa
       61 atagaagaaa tcaaagaaca tttatataaa aattggtaat ttaaacaatg acaacacaaa
      121 acttccttgc cgagatcggc acagaagagc tgccaccgaa ggcactcaaa aaattagcga
      181 ccgcatttgc ggagaatgta gaaaacgaat taaaccaagc aggtctttcg tttgagaaag
      241 tggaatggtt tgctgctcct cgccgtttgg cggtgaaggt gttgagcctt gcggaaagcc
      301 agccgagtaa agaggttgag aaacgagggc cggcggtgtc ggcagcgttt gatgccgaag
      361 gcaagccgac taaggcagcg gaaggctggg cgaagggctg cgggattacc gtagagcaag
      421 ctgagcgtat tgccaccgac aaaggcgaat ggttggtgca tcgtgccgtg attgaaggtc
      481 agccgactaa aaatctgttg gtcgatatta tcgccaaatc gctggcgaac ttgccgattc
      541 caaaaacgat gcgttggggc gataaaaccg agcagttcgt ccgccctgtg cataccgtga
      601 cacttttatt cggggcggag ttgatcgaag gtgagatctt aggcgtgaaa agcggccgta
      661 ctattcgtgg tcaccgtttc ttaggtgaac gtgagttcca aattgagaac gccgatcaat
      721 atccgcaact gttgaaagat cgtggatctg tggtagcaga tttcaatgag cgtaaagcct
      781 taattcttgc aaaatcacag gaaaaagcaa ccgctttggg tggcgttgcc gatattgaag
      841 aagatttgct ggacgaagtg acctcgttgg tggaataccc gaacgtactc accgccaagt
      901 ttgaagagcg tttccttgct gtgccggcgg aagccttagt ttacaccatg aaaggcgacc
      961 aaaaatactt cccgatttat tcaaaagacg gcaaattgtt accgcacttt atttttgtgt
     1021 cgaacatcaa tccggaagac ccaagcaaaa tcatcgaggg taacgaaaaa gtggttcgcc
     1081 cacgtttgac cgatgcggag ttcttcttca aaaccgactt aaaacagaag ttggaagacc
     1141 aactgccacg ccttgaaacc gtgttgttcc agcaacagct tggcacattg cgtgataaaa
     1201 ccgctcgcat tgaagcgttg gcaggtgaaa ttgcgaagca aatcggggca gatgaaacca
     1261 aagcgaaacg tgcaggtctc ctctcaaaat gtgacctgat gaccaatatg gtgtttgaat
     1321 ttactgatac ccaaggcgtg atgggtatgc actatgcccg ccacgacggt gaagatgaag
     1381 aagtggcggt ggcgttaaac gagcagtata tgccacgttt tgctggcgat aacttgccaa
     1441 attcattggt ggcttgctcg gtggcgttgg cggacaaatt tgacacgcta acagggattt
     1501 tcggcattgg tcaagccccg aaaggcagtg ccgacccgtt cgccctacgc cgtgcggcac
     1561 ttggctcgtt gcggattatt gtggagaaaa atttaccgct tgatttaacc gatttagtgg
     1621 cgaaatctgc tcaattattt ggcgataaac tcaccaacaa agacgtggtt gaggacgtgg
     1681 tggactttat gctcggccgc ttccgtgcgt ggtatgagag cgaaggcatt gcggtggacg
     1741 tgatccaagc cgttctcgcc cgccgtccga ccaagcctgc cgacttcgat gcccgtgtgc
     1801 gtgccgtgtc tcacttccgc acccttgaca gtgccgaagc cttagccgca gcgaataaac
     1861 gggtgagtaa cattcttgcc aaagccgata ttgcaattgg cgacattgat gtttcagctt
     1921 gcgtagagcc agcagaaaaa gcattagccg aggcggttat tgcgttgaaa gccgaagttc
     1981 aaccgctgat tgcacagggc gactacaccg ctgtgctgga taaattagcg aacctccgcc
     2041 aaccggttga tgccttcttt gacggagtaa tggtaaatgc agaagaccaa aaactgcgtc
     2101 aaaaccgcct cgccatttta agcacgctac aaggcttgtt cctgcaagtg gcggatattt
     2161 cgctgttgca ataacaataa gtttgcaata attgcaaaat tttaatgaaa atagaccgct
     2221 tgcagtaatt gtgatctgca agcggtcttt tttgcttgaa attttaccaa aggcgggatt
     2281 atttaagttt tggtttattc accataatct cgatgacttg gcggtctgtg tattgcatac
     2341 tacgagaggc aatgctgcat aagttattaa ttgaacgatc aatatcgtgt tcgacaattc
     2401 cttcgttgcc tgttacttgg ctattatcca tagacatcag aatggattta tagcttgatg
     2461 ttacgctggt ggagactttc atcgcacaac tgtttgaagc accatcacag ataataccgc
     2521 taatatcgcc gatcatacta ctaattgcca tactgatatt ctcaaatttc cctgtgagca
     2581 gccacgctat gccggcacag cttcccatag ccgcggttgt tacggcacag agtgcagata
     2641 atttcggtaa cttgctgtga atataaattg ccatgaggtg tgataaaaag agtgctctaa
     2701 tgcgttgctc atcagtgaca tttaaatggc gggcaacgac aacaatcggc atagttgctg
     2761 taattccttg attacctgaa cccgaattgc tcatagcagg taaacttgca ccgcccattc
     2821 tagcatcaga ggcagaggtg gtttctataa caatgcgatt aagcaaatca tcactgatta
     2881 gacctagacc aatctgtttt tgcaatgtcc ttccgatatg tagcccataa tcggcacgta
     2941 atccttcttg tgagagtgcg gaatttaatt gtgctgcttg ctcaataaag cgaatttttt
     3001 ccaattcgat ttgcatagaa aaattaaata tatcttttgc cgaaagtgaa gcaaagatct
     3061 cagtagtatt atcgttattg acggcacaag gtttgcttaa aatagtttgc ccgttttttt
     3121 caatgtaaat gacattggta tggtgttcag caatacgaac acatactcga ttcgcttggt
     3181 gaaatagtgt tgcttcagaa tatagaatat gttctgtttc gaaaatagag acagacactt
     3241 tatcggtatt taacatagct ttagcttgct taacctgttc tggcgtaata ttttttaata
     3301 cttctaatcc accatcaggc tcccctccga ttgctccaat agctgccgcc ataggcaatc
     3361 cgacggttgc agttcccggt actgctactc ccatcccatt tttcatcaag ttaggggaaa
     3421 cttttgcctc aatacgttct ggtaaatgac ctaaatattg gcgtgcaatg gcggatgcaa
     3481 gggcgagaga aataggttct gtacagccta atgcagggac aacttcatgg ttgactgcat
     3541 gtaaaatgga ttgtactaat ttttcgcagt gaatattcat agataaaacc ttattactct
     3601 aaaaatgtga ggaatggaga aatacataat aaaatgccgg taatgataat aatattgagt
     3661 gctagccctt tatatttgaa taatgcaggc actttataga ctaaataggc cggaatcaag
     3721 cacccaacta agccaaaaat aggactacag attgaggtaa agcttaaaac cggtgcattt
     3781 aatacaatcg cactccaagc cagcagaatg gaaaataaca taatcccttt ctgcacataa
     3841 ttaggattga ttttttcagc cgggaatttt cttaataata ggttcatcac aatgccttga
     3901 gtggcttctc taaaacctaa atataccccg aaaaaggctg tcataacggc aaaaatattt
     3961 aatgcaacac ctacataggt tgcccaacta ccagggaaaa attgggctgc aattgctaat
     4021 gcggaaacat tttgctcgta tgctttgagc gcttcttctc tccccattgc aagtgtaaaa
     4081 gagacagcgt aaaaaaaaac ggtaataaat aagatagcaa atgcaatatt catcgctcgt
     4141 agggctttat agcgcgcaac ttcacgagac tgttctttag cacggtaaga aattaccatt
     4201 gggctgagag tttgcaagaa gagtatagag gttagggtga aaggaagggt aatgatggca
     4261 tcttttataa gtttgccgaa aggaggcatt gcaccgatat tatggagttg ccacattcca
     4321 atcattgcaa gccctaaggc ggcaacgaca aatagcttag ttaataccat aaatgtagat
     4381 attttaaaca gtagcttttc gcctcgagaa gataaggcaa ctaatataca gattagcact
     4441 aagccataaa atggattatc agagagtagt gtattggtaa tgccgaaggt aagaagatag
     4501 gaggcactgt cgtttgtaat tgcggtagaa taaacaaaca tccaaatcac taacataata
     4561 aaataaagta cacctaaaaa gattccccag tttttgccca ggtagccact aataacggtg
     4621 gggtaatctt tgcattccgg agattctgct aaagtattaa tgaacagacg ctgaaaaagg
     4681 tacatcgccg ggtatccgat aatagaagaa agtagaaaaa cccacatgcc cataagtcct
     4741 acttgtaccg gtaaaaagac gatgcctgcc ccgatagcca taccaatact cataatgatc
     4801 cagccgaagt cggtagaatc aaattttgtt gcttgtttaa attcggcagg cgagagtttt
     4861 tgagtatcca tagagtctcc ttaaatcgta acagtataat taagtgttat ttttgaattc
     4921 tcttaaatgt ttataaattg cgtggctggt tagggagagt ttttctgcca caataggtac
     4981 tgcctctttt agctcaaaga tgccattttc aaacaaatag aagataatgg atttcttata
     5041 gagttttgaa tgtttggtag tgtgttgctc aatgtgagta actgctttta gaaaggtttc
     5101 ttcaataagt tcttttgggt gagtaataaa gttttcactt ttataatgag gcggaatagg
     5161 atcgtaattc ataaaagagc taacggtttt atctaatggt gtcgataaat ttaaattaat
     5221 acaaaataat ccgataggtt tgccctcatg cccgataata atatgcgtgg tggacttaac
     5281 taagttaccg ttatttaacc gtgaaaagta aaccagctca gtattagatt gatctttttg
     5341 gtaacatttt agtaactgta atcctttatc tgtaataggc gaacctattt ttcggttagt
     5401 atgatgtccg ttaatgattt taataacgga tttttcatag gcattcaatg aatgaataac
     5461 cacctcacag aattctccta ataaccctgc tattgcttca cttaatgaga aataagacag
     5521 cataatttct ttgtctaaat catgaagata ctctaattta tctggcataa cttttactcc
     5581 aatttttgtg aattataaga atgagtaaat tttaaagtca attatattta actttattaa
     5641 gagttaaaag tcagtatttt ttgaccaaga tcatattttg agggaaagat ataagaggac
     5701 aaaccaaata agatttgcct cgattctgac taggaaaagt ggcaaattca atctatcttg
     5761 attaaaataa tgtacgtact tataggaaga aggaaaacac aatgtcagta aaaaccgaag
     5821 ttttatttag taatcattgg aatgttcgag tgagtgatcc gggctttgaa ggctcgccaa
     5881 gccactattt tgaaaccgta tatttaacgc tggaagcctt tattaacggc gaaaatgtac
     5941 attatgaatt tactcgtaaa gtggagcaag aagtgaaaac tcatcgcagt tttactgatg
     6001 tgaatgaatt gtttgaattt ctcggcgaat atttaagccc tgttgcactt ggtaatgttg
     6061 gcgtgcgtat cggtcagttg gggctagcct aatctcaaag ggcaaatctt ttgcccttgc
     6121 aacattttcc taaaaattaa ccgcttgtta ttacgtttat gaccacttcc aaccctcttt
     6181 tccaacaaac ccgcccctat tgggatttct tacgcattga aaagcaagtt agcccgcata
     6241 ccttaagcaa ttatcaacgc caattaatgg cggtgagcga gcttttttcg caagcaggca
     6301 ttgaaaattg ggaagaggtc gaaagtagct cggtgcgttg gatgttaagc caaagccata
     6361 agcaagggtt gagtgcgaaa agtatcggct tacgcttggt ggcgttacgg caatggtttg
     6421 tctatttgat taaaatcggg cgaatgtcgg caaacccgac tttaggggtg aaatcgccga
     6481 aagtaggtaa gcatttgccg aaaaatattg atgcggagca ggtcgggcag ttgctggcga
     6541 ttgagagtga tgagccgagc gatattcgag atattgcgat gatggagctg atgtatagtt
     6601 ccggcttgcg tttatcggaa ttacaagggc tggatttagg cgatatggat ttatcggcac
     6661 gagaagtacg ggtgcaaggt aagggtagca aagagcgaat tgtgccgatt ggctcgcaag
     6721 cgttaaaagc gttaaatcgc tggttagaaa tgcgtttgca atttaagccg caagataatg
     6781 cggtgtttct gaataagcga ggtgggcggt tatctcatcg ttccattcag ttggcaatga
     6841 agaaatgggg tgagcgacaa gggctggaaa gccatctgca tccacataaa ttacgtcact
     6901 cttttgcgac tcatatgtta gaggcaagcg gtgatttgcg agcggttcag gaattattgg
     6961 gtcatagtag cctgtccacc actcaaattt atacgcatct ggatttccaa cacttagcta
     7021 aaatttatga ctctgcccac ccaagagcaa ggcggaagca ggaagattag gcattctccg
     7081 gttcaagggt tttcattttg cagaagaaat accaatattg aattatcact aacactacta
     7141 acgcaatttt cccaccgata tggggcagtg caaagaaagc aaatagtgta aacggaaacg
     7201 aaatcgctaa aatcgtgatt ttttgcttca tcgtcattgc ccgtttctca tcatattctt
     7261 gcagatattt tttgtataat ttggtttgaa taaaccactg gcggattctc tccgagcctt
     7321 tagtaaagca gaacagagcc aaaagtaaga acggtgtggt cggcaagccc ggtaatactg
     7381 ccccgatgat gcctaaacca atacaaataa aaccacagat aatataaagg tatttcataa
     7441 taattaagtt attgataatg aatcgcaatt atcctaaagc aactttaggc tgatttcaac
     7501 cagtttatag cgatggattc aagcggtggt tttatctgat tttcttgcaa atgaaataaa
     7561 aaaacctgct gattgctcaa caggtttaaa gactggcgga ggaagtgaga ttcgaactca
     7621 cggagggcgt taaccctcgc cggttttcaa gaccggtgca ttcaaccgct ctgccattcc
     7681 tccgttgaaa acgttgcaat aatagagatt attgcgaaca tcgtcaagta ataaatctta
     7741 aaagctgctt attcgttctt tttttcagca caatttattt tctaattaac caaacgccac
     7801 tttcaatatg gtgggtgtaa gggaattggt caaaaagagc ggctttttca atccgatggg
     7861 tttggcttaa ttgttgtaaa ttctcggcaa gggtttccgg attgcaagag atatagagaa
     7921 tccgctcata cgcttgcacc atatttaatg tagcttgatc taaccctgca cgaggtggat
     7981 caacaaaaat ggtattgcat tcgtaggcgt ttaaatcaat cccttttaag cgataaaagg
     8041 ctcgcacacc gttcatcgct tgggtaaatt cttctgccga cattcggata atttgtaggt
     8101 taacaatgcc atttttttca atattgtatt gagccgattg cactgaagat tttgagatct
     8161 cggttgccag cactttgcgg aagttttccg ccaaggcaat cgaaaaattg ccgttgccgc
     8221 agtaaagctc aagcaaatcg ccttcactat tttttgtgca atttctcgcc cattccagca
     8281 ttttaatatt catttccgca ttcggctggg taaagctgtt ttccacttgg cgatacacat
     8341 aatttttgcc gtgtaccggt agaatttctt ccacataatc gcaatccagt gcgatttttt
     8401 gtttattggc acgcccgata atttgcactt tgaaaccttg ttgctctaaa cggcttttta
     8461 aggcgtttgc ctgttcaacc cattcttcat tcaggctttt gtggtaaagc attgagactg
     8521 caatttcacc gcttaaggtg cttaaataat cgatctggaa cagcttgcga gtcagtagtt
     8581 cattgccttt aatttccgcc aataatgcgg tcatcatatg gttaatcagc tcactggcaa
     8641 tagggaagct atccacacga taacgagctt tggtttcagg gttgaacata atgtggtaca
     8701 gctcgccttc ctcgtgccac actcgaaatt ctgcccgcat acggaaatgg cttggctttg
     8761 aggcaaatac ctcaatcgca ggcgggttaa acggcttgag taaagcggtc aaattttcgg
     8821 ttttttttgc aagaagatcg gaatattgtt cgataggaag agtcattttt taccacaaat
     8881 agcaaatgaa aaaacaaacc acgaattact tcgtggtttt aaattagaaa ttattcagca
     8941 gcactgaagt catcgccggc atcgctacct gcattgcctg aaagggtgta gatgcgtttt
     9001 gttttactag ttaatgtgcg gtattttaac cacgcttttt caatgtcagt ttctgctacc
     9061 tcttcgcctt tcattaccgc aacgaaacgt ttttcttctt gagttgccgg cttacgttca
     9121 ccactttcta aagccaagca agcttgaccg aattgttcta aagtttgtga ttcacgaatg
     9181 gtgtaatcgc cgtggcgaga gaaaccacgt ggataatttt tatcgtcaaa aaagcggcgc
     9241 gtaacgctga aactgtctgc cataataatg cctcgttgtt tgaaattagg gaaaataaaa
     9301 tcggcataca ttaaacaaaa acagcgaata aatcaatgcc ttaatgtaaa aaagcggtca
     9361 aatttggcaa attttttgca aaaaactctt taaggagaaa tattgatcct tttaaaatag
     9421 acaatgcagt ctgaggtata ttttttatat ttgttaaggt atattaccta aatgtattga
     9481 gttttgatta actttaatat ttggagatat actgtg
//
LOCUS       DANLRW010000093         9396 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.094, whole genome shotgun sequence.
ACCESSION   DANLRW010000093 DANLRW010000000
VERSION     DANLRW010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9396
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.094"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(405..2522)
                     /gene="spoT"
                     /locus_tag="PXA71_001964"
     CDS             complement(405..2522)
                     /gene="spoT"
                     /locus_tag="PXA71_001964"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HDL5106044.1"
                     /translation="MYLFEPLDRIIQGYLPPEQIERVKRAYVIARDAHEGQTRSSGEP
                     YITHPVAVASIIAEMKLDQEAVIAALLHDVIEDTPYTEEELAAEFGQSVADIVQGVSK
                     LDKLKFRTRQEAEVANFRKMILAMTKDIRVVLIKLADRTHNMRTLGALRPDKRRRIAK
                     ETLEIYSPLAHRLGIEHIKNELEDLGFEAMHPQRYRVLKMAIASARGHRKELIQRIAD
                     DIRGRLEEVQIEARVYGREKHLYSIYQKMRQKDQHFHSILDIYAFRVVVDNVDNCYRV
                     LGQMHALYKPRPKRVKDYIAVPKPNGYQSLHTSMIGPHGVPVEVQIRTEDMDKMADMG
                     VTAHWRYKEGESHHNTTVQLKAQQWLQSIVELQNSAGNTAEFIDSVKSDLFSDDIFVF
                     TPKGRIVELPANATAIDFAYAVHSGIGDRCVGAMVDRNPYPLSEPLRTGQTVEIITEQ
                     GKRPNASWLNFVVSGKARAKIRQSLKNQQHDEAIALGRRQLVRAMNLRSLDELCSETI
                     QSVLDELRLSSFDELLAEIGLGNQMSNVIAQRLLGEPLLIDTDGNPENNQPLKIEGIE
                     NRLISFANCCLPIPGDEIIAHVSSGKGLAIHNACCGNVKDYATEPSNYLPVEWEIAKE
                     KAIQFETEIVLDIINEPGVLAGITSTLAKLNSNIGSINSEAREGNIYQVRVQISVENK
                     EHSELILRKLLSVKGVVKAARKQ"
     gene            complement(2632..2913)
                     /gene="rpoZ"
                     /locus_tag="PXA71_001965"
     CDS             complement(2632..2913)
                     /gene="rpoZ"
                     /locus_tag="PXA71_001965"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDL5106045.1"
                     /translation="MARVTVQEAAEKIGNRFDLILIAARRARQLQLHTREPLVPEEND
                     KPTVIALREIEEGLITTDIMDQLENHDSIKQEAAEQEAISFLTEMSNEA"
     gene            complement(3016..3513)
                     /locus_tag="PXA71_001966"
     CDS             complement(3016..3513)
                     /locus_tag="PXA71_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDL5106046.1"
                     /translation="MAHFYEYLEFNSDEDRENQLEVYVEVKLSTDTEEKLQAVGVQGD
                     WLVMAEPYCPDCVEIVAYFQRMAKLNPNIKVKYVARKDNQERKHFDSDEQQQAVISAQ
                     KIPTIFDIRNGKTELVLSEFPQFLKDKMAANPEQFEQLKADFRMGKFGKEVEAELLAI
                     LLNTK"
     gene            complement(3538..4560)
                     /locus_tag="PXA71_001967"
     CDS             complement(3538..4560)
                     /locus_tag="PXA71_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005825060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5106047.1"
                     /translation="MSVTKKRLTLSDIAELSGVSKTTVSMILNGRGNDFRIKSETCQK
                     VKEIAKKHGYRANVYAKSLQAQRTNVIGLVIPDLTNYGFALTSRTLEKLCRENGLQLV
                     IACSDDTFEGEKKAIERLLDRQVDLLITAPTHNEPTYYQNAAQYTPMLQLDRYISGLN
                     IPSITSNDTQSISMLVENIVRAYHLKEFFYLGGQLSLSPSQNRLKGFREGLEQSHLAL
                     DENWVLHQDYQPESGYQMFAQIVEKLGRLPEAVFTASFTLLEGVMRYLTEHQQMDKLL
                     TQELHLATFDDHHLLNALPFHIHSIKQDHQQIAERTFELIQQKLAQQKIDDVKVDCEI
                     LWRKSI"
     gene            complement(4600..6030)
                     /locus_tag="PXA71_001968"
     CDS             complement(4600..6030)
                     /locus_tag="PXA71_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 32 protein"
                     /protein_id="HDL5106048.1"
                     /translation="MHIFNNGKYKSLHAQSEGELNALRQTVLSDPDFYPTYHLAPETG
                     LFNDPNGLIFDGEKYHIFAQWFPYGALHGMKHWQHFITTDFQTFSKGDLLIPDELFES
                     HGCYSGGAILWQDKIVAFYTGNTRRPSDNARIPHQNIAIFDKSGKLLEKRCIIDQAPA
                     GYTEHVRDPKPYLTAEGKIRFVLGAQRENLTGTALIYEMDDLNATPRLIAELEVHNFD
                     NSNVFMWECPDLFSLGGKDLFVWSPQGKLRESHQFQNNYHATYALGELNGNRLRAEHI
                     EELDYGFDFYAPQTVENSDRILFGWVGLPDLTYPTDKYQWHSMLTLPRKLSLQNGKVI
                     QNPIVNVGELQAVEMSENFAIENLDTAYLQISVENQPLVLDFFSNEQGQKLSLRFENG
                     VLSLDRSQTEQTELMEKFGSVRHCKIEQLETIEIFFDRSVVEIFVNGGEKVLTSRFFI
                     AKRENVVKSSRPIQVKVAKVLPISVE"
     gene            complement(6135..7058)
                     /locus_tag="PXA71_001969"
     CDS             complement(6135..7058)
                     /locus_tag="PXA71_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005606644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoimidazole riboside kinase"
                     /protein_id="HDL5106049.1"
                     /translation="MSKIWVTGDAVVDLIPDGEHHYLKCAGGAPANVAVGVSRLGVEA
                     GFIGRVGNDPLGKFMREVLQAENVCTKQMILDAQHRTSTVIVGLDNGERSFTFMVNPS
                     ADQFLEIGDLPEFNQGDFLHCCSIALINDPSRSTTIEGIRRVKKAGGYVSFDPNLRES
                     LWKSLDEMKTVVNSVVAMADILKFSEEELTLLTETETLEQATQAITAQYPEKLIIITL
                     GKDGAIYHFNGKSQVVAGKALKPVDTTGAGDAFVSGLLAGLAQTPNWHDETVLVEVIR
                     KANASGALATTAKGAMSALPNKAELDAFLAE"
     gene            complement(7175..8602)
                     /gene="miaB"
                     /locus_tag="PXA71_001970"
     CDS             complement(7175..8602)
                     /gene="miaB"
                     /locus_tag="PXA71_001970"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDL5106050.1"
                     /translation="MAKLHITTWGCQMNEYDSSKMADLLNSTHGFELTENPEDADVLL
                     LNTCSIREKAQEKVFSQLGRWKNWKKDKPNLIIGVGGCVASQEGEHIRDRAPYVDIVF
                     GPQTLHRLPEMINQIRGGKSSIVDISFPEIEKFDRLPEPKAEGPTAFVSIMEGCNKYC
                     SFCVVPYTRGEEVSRPVDDVLFEIAQLAAQGVREVNLLGQNVNAYRGETFDGGICTFA
                     ELLRLVAAIDGIDRLRYTTSHPIEFTDDIIEVYRDTPELVSFLHLPIQSGSDRVLTMM
                     KRNHTALEYKAIIRKLRAVRPEIQISSDFIVGFPGETAEDFEQTMKVIEQVNFDMSFS
                     FIYSARPGTPAADLPDNVSDDEKKERLSRLQQRINHQAMQFSRAMLGTEQRILVEGPS
                     KKDLMELTGRTETNRVVNFVGTPDMIGKFVDVKITDVYTNSLRGEVIRTEDQMGLRVV
                     ESAESVIARTRKEDDLGVGKYVVNL"
     gene            complement(8819..9319)
                     /gene="crr"
                     /locus_tag="PXA71_001971"
     CDS             complement(8819..9319)
                     /gene="crr"
                     /locus_tag="PXA71_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005702996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDL5106051.1"
                     /translation="MGLFDKLFGSKQKESQEIKIYAPLTGEIVNIEDVPDVVFSEKIV
                     GDGVAIRPSGDTIVAPVNGTIGKIFETNHAFSIESEEGVELFVHFGIDTVELKGEGFT
                     RLAQEGQTVKVGEPIIKFDLALLEGKAKSVLTPIVISNMDEISNLSKLNGQVVAGESV
                     VLTLTK"
BASE COUNT         2587 a         2129 c         1808 g         2872 t
ORIGIN      
        1 cattttcgag aaaattttcg ctaagcccac catcttgatt aggctttcta gatatatgcc
       61 aaaatccaga taaacgataa taccctacct gagataattt tttctctgca tagcttttat
      121 catttatgag cattcctcta gatatgagta gttctactaa ttcgtgatac tctttatgtg
      181 gttttgtagg cataaaattg aaggcatttt aagaaaggca aggacgtagc ttgacactct
      241 aagtcgatta catttagtaa acctcaggga caggggctac gccacgattg caagggatta
      301 tacattttag ctgattaaag tcaaaaggtt tcatcaatta ataatagcaa tactgtactt
      361 ttaaggacta taattgcaaa aaactgataa aattttaccg cttgttactg cttacgggcc
      421 gcttttacaa caccttttac acttaatagc ttacggagaa tcagctcaga atgctcttta
      481 ttttccacag aaatttgtac tctcacttga tagatatttc cttctcttgc ctcgctatta
      541 atgctgccaa tgttgctatt taatttggca agcgttgatg tgatccccgc gagtacccct
      601 ggttcattga taatatccag tacgatttcc gtttcaaatt gaatcgcttt ttctttggca
      661 atttcccatt ccacaggtaa ataattactc ggctctgttg cgtaatcttt cacattacca
      721 caacaagcat tgtggattgc caatccttta cctgaactga cgtgagcaat aatttcatca
      781 cccggtatag gtaagcaaca gtttgcaaaa ctgataaggc ggttctcaat cccttcaatt
      841 ttaagcggtt gattattttc tggattacca tcagtatcaa ttaatagtgg ctcccctaat
      901 aagcgttgag cgataacatt actcatttgg ttacctagac caatttcagc cagtagctca
      961 tcaaagcttg ataaacgtag ctcgtctaat acggattgaa tagtttctga acacaattca
     1021 tcaagtgagc gtaaattcat tgcccgaact agctgtctac gcccaagtgc aatcgcctca
     1081 tcgtgctgct gatttttaag cgattgacga attttagccc tcgccttacc acttactaca
     1141 aaatttaacc acgatgcatt tgggcgctta ccttgctcgg taataatttc caccgtctgt
     1201 cctgttcgta gcggttctga aagtggatac ggattgcgat caaccatcgc acctacacaa
     1261 cgatccccaa tgcctgaatg caccgcatag gcaaagtcaa tagcggtagc attcgccggc
     1321 aattcaacaa tacgcccttt cggggtaaag acgaaaatat cgtcagagaa cagatccgat
     1381 ttaacgctat caataaattc tgctgtattg ccggcactgt tttgcaattc aacaatactt
     1441 tgtagccatt gctgggcttt gagttgaacg gtcgtgttat ggtgcgactc gccctctttg
     1501 taacgccagt gagctgttac ccccatatcc gccattttgt ccatatcttc ggtgcgaatc
     1561 tgtacctcca ccggtacacc gtgcgggcca atcatcgaag tgtgtaaaga ttgatagccg
     1621 ttcggttttg gcacggcaat ataatctttc acccgtttcg gacgaggctt atacagtgcg
     1681 tgcatctgcc ctaatacacg gtaacaatta tctacattat caaccactac tcggaaagca
     1741 taaatatcta aaatcgaatg aaaatgttga tctttctggc gcattttttg gtaaatggaa
     1801 tagagatgtt tttcacgccc atacacacgg gcttcaattt gcacctcttc taaccgacca
     1861 cgaatatcat cggcaatgcg ttgaattagc tctttacgat gtcctctggc actggcaata
     1921 gccattttca gtacccgata acgttgcggg tgcattgcct cgaagcctaa atcttccaac
     1981 tcgtttttaa tatgctctat tcccaagcga tgtgccaacg ggctataaat ctctaaggtt
     2041 tctttcgcta tacggcggcg tttatccgga cgcaaagcac caagcgtacg catattatgg
     2101 gttcggtcgg caagtttaat taacacaacc cgaatgtctt tggtcattgc caaaatcatt
     2161 ttacggaagt ttgccacttc tgcctcttgg cgggtgcgga attttaattt atccagctta
     2221 gaaacgcctt gtacaatatc tgctacgctc tgtccaaatt ccgccgccag ttcttcttcg
     2281 gtgtaaggtg tatcttcaat cacatcgtgc aacaaagccg caatcaccgc ttcttgatcg
     2341 agcttcattt ccgcaataat cgacgccact gctaccgggt gagtaatata gggctcaccg
     2401 ctagagcgtg tttgtccctc gtgagcatca cgggctatca cataagcacg ttttacacgc
     2461 tcaatctgct cgggtggcaa atagccttga ataattcgat ctaaaggttc aaaaagatac
     2521 acgttatacc tcaacaacag aaataaaaat ggacaacgaa tttgcaaatt ttgaggaaaa
     2581 tcctaccgct tgcagactca attgtccatt ctctatttac gaaaaataaa attacgcttc
     2641 gttgctcatt tcagttaaaa atgaaatcgc ctcttgctcc gccgcttctt gcttaataga
     2701 gtcgtgattt tccagctgat ccataatgtc agttgtaatt aaaccttctt caatttcacg
     2761 taatgcaatc acggtcggct tatcgttttc ttcaggcaca agtggctcac gggtgtgaag
     2821 ttgtaattgt cttgcacgac gtgcagcaat taagattaaa tcaaaacggt tgccaatttt
     2881 ctccgctgct tcttgtacgg ttacacgagc cataaattta ctccaaagat ttattcggtt
     2941 ttattcataa aaagattgcg aattatacag aaattccgcc aattccgcaa tgaaagcggg
     3001 ctaaattcac aaaatttatt tggtattcag taaaatcgcc aataattcag cctcaacctc
     3061 tttgccgaat tttcccattc taaaatcggc ttttagttgc tcgaattgct cagggttcgc
     3121 tgccatttta tcttttaaaa attgcggaaa ttcagataac actaattctg ttttgccatt
     3181 acgaatatca aaaatagttg gaattttttg cgcagaaatg accgcttgtt gctgttcatc
     3241 gctgtcaaaa tgtttgcgtt cctgattatc tttgcgagcc acatatttca ccttaatgtt
     3301 aggattgagc tttgccattc gctggaaata agccacaatt tccacacaat cggggcaata
     3361 tggctctgcc attaccagcc agtccccttg cacgccaaca gcttgcagtt tttcttccgt
     3421 atctgtggaa agcttgacct ccacatacac ttctaattga ttttcacgat cttcatcgct
     3481 gttaaattct aaatattcgt aaaaatgtgc cataattttg tcttttccta tctcatctta
     3541 aatggattta cgccataaaa tttcacaatc aactttaacg tcatctattt tctgttgcgc
     3601 taacttttgc tgaattaatt caaaggtacg ttcggcaatt tgttggtggt cttgcttaat
     3661 tgaatgaata tgaaaaggta gtgcattcag taaatggtga tcatcaaagg ttgctaaatg
     3721 cagttcttga gtcaataatt tatccatttg ttggtgttca gtcagatagc gcattactcc
     3781 ctcaagtagg gtaaaagagg ctgtgaatac cgcttctggg agcctgccaa gtttttcaac
     3841 tatctgagcg aacatttgat agcccgattc cggctgatag tcttgatgca gaacccaatt
     3901 ttcatcaagt gccaaatgtg actgctccaa accttcacgg aagcctttta aacgattttg
     3961 acttggcgag agtgaaagtt gtccacctaa gtaaaaaaac tcttttaagt gataagcccg
     4021 tacaatattt tccaccaaca tactgatact ttgtgtatca ttactggtga tagaagggat
     4081 attcaaccca gaaatatagc ggtctagctg taacattggg gtatattgtg ccgcattttg
     4141 ataataagtc ggctcattat gtgtcggagc agtaatcagt aaatctacct gtctgtctaa
     4201 taaacgctct atcgctttct tctcaccttc aaaggtatca tccgagcaag cgatcactag
     4261 ctgtaacccg ttttcacggc ataatttctc taaggttctt gaggtcagag caaagccata
     4321 attcgttaaa tcgggaatga ctaaaccgat cacattcgtg cgttgagcct gtaatgattt
     4381 tgcatataca ttagcacgat aaccgtgttt tttagcgatc tctttcactt tttggcaggt
     4441 ttcggatttg attctaaaat cattgccccg cccatttaaa atcatactga ctgttgtttt
     4501 agatacgccg ctgagttccg caatatcact gagcgttagg cgttttttag tcacacttat
     4561 ctccttttag cataaaaatg ggcattactg cccattgctt tattctacgc taattggcaa
     4621 tacttttgct actttcactt gaatcggacg agagcttttt acgacatttt cacgcttagc
     4681 gataaaaaag cgtgaagtca gcactttttc cccgccgttt acgaaaattt ccaccacaga
     4741 acggtcaaag aaaatctcga ttgtctctaa ttgttcaatt ttgcaatgac gaaccgagcc
     4801 aaatttttcc atcaattctg tttgttcggt ttggctacga tctaagctca acaccccatt
     4861 ttcaaaacgt aagctgagct tttgcccctg ttcattgctg aaaaaatcca acacaagcgg
     4921 ttgattttcc acagaaattt gcaagtaggc agtatccaaa ttctcgattg caaaattttc
     4981 tgacatttcg accgcttgta attcgcctac attcacgatt gggttttgta tcactttgcc
     5041 gttttgcagg gaaagtttac gaggcaatgt cagcattgaa tgccactgat atttatcagt
     5101 tgggtaagtg agatcaggca agccgaccca gccaaacaaa atgcgatcgg aattttccac
     5161 cgtttgcggt gcgtaaaagt caaagccgta gtccagctct tcaatatgct ctgcccgtaa
     5221 tctgttgccg tttagctcgc caagtgcgta agtggcgtgg tagttatttt ggaattgatg
     5281 gctttcacgc agtttgcctt gtggcgacca cacaaacaga tctttaccac caagtgagaa
     5341 cagatccgga cactcccaca taaacacatt gctgttatca aaattgtgga cttccagttc
     5401 tgcgattaaa cggggtgtgg catttaaatc gtccatttca taaattaacg ccgtgccggt
     5461 caagttttca cgctgagccc ccaacacaaa acgaattttg ccctctgcgg taaggtaagg
     5521 tttcgggtca cgcacgtgtt cggtgtagcc tgccggtgct tggtcgataa tgcaacgctt
     5581 ttccaataat ttgcccgatt tatcaaaaat cgcgatattt tggtgaggaa tgcgggcatt
     5641 atctgatggg cggcgtgtat tgccggtgta aaaagcgaca atcttatctt gccataaaat
     5701 cgccccacct gaataacagc cgtgggattc aaacagctca tcgggaatca gcaaatcccc
     5761 tttactgaac gtttgaaaat cggtagtgat gaaatgctgc caatgtttca ttccatgtaa
     5821 tgccccataa ggaaaccatt gggcgaaaat atggtatttt tcaccatcga aaatcaagcc
     5881 gtttgggtca ttaaataagc ctgtttcggg agcgagatga taggttgggt aaaaatcggg
     5941 atcagataaa acggtttggc gaagagcgtt taattcgccc tcgctttgtg cgtgcaggct
     6001 tttgtatttg ccgttgttga aaatgtgcat agagtgttcc tgtcatttca gaaattacga
     6061 tggtgcaagc gtccacgctt gtaccctttt gtaaaaaatg aggcacaagc gtggacactt
     6121 gcgccatcat tacattattc cgccaaaaat gcgtctaact ccgctttatt cggtaatgcc
     6181 gacatcgccc cttttgctgt ggtggctaac gcaccggaag catttgcttt gcggatcact
     6241 tcaactaaca cagtttcatc gtgccaattc ggcgtttgag caagaccggc taataatccg
     6301 ctgacaaagg catctccggc accggtggta tccacaggtt tcaaggcttt gccggcaacg
     6361 acttggcttt ttccgttgaa atggtagatt gcaccgtctt tgccaagggt gataataatc
     6421 aatttctccg gatactgagc ggtaatagct tgtgtggctt gttccaaagt ttctgtctcg
     6481 gttaataagg tcagctcttc ttcggaaaat ttgagaatat ccgccatcgc caccacagaa
     6541 tttaccactg ttttcatttc atcaaggctc ttccagagcg attcacgcaa gtttggatca
     6601 aacgaaacat agccacccgc ctttttcact cggcgaatcc cttcaatggt agtggaacgg
     6661 gatgggtcgt taatcaaggc aatagaacag cagtgtaaga aatcaccttg gttaaattca
     6721 ggtaaatcgc cgatttctaa aaattggtcg gcactcggat ttaccataaa agtaaaacta
     6781 cgctcaccgt tatctaagcc aacaatcacg gtggaagtgc ggtgctgagc gtctaaaatc
     6841 atctgtttgg tgcaaacatt ttctgcctgt aacacttctc gcataaattt acccagaggg
     6901 tcgttaccca cacgcccgat aaatcctgcc tcaaccccta aacgagaaac gcctactgca
     6961 acattcgccg gagcaccacc ggcacatttt aaatagtgat gttcgccgtc gggaattaaa
     7021 tccaccaccg catcgcctgt tacccaaatc ttactcatct catacacctt taattagtca
     7081 caaaacacca agctaaaacg atttagcatt tattcgatta tatactaaaa gaccgcttgt
     7141 acatacctac aagcggtcat tttttcttta atttttacag attaaccacg tatttaccta
     7201 cacctaaatc atcttcttta cgagtgcggg caatcacgct ttctgccgat tccaccacac
     7261 gtaatcccat ttggtcttcg gtacgaatca cttcgccacg gagtgagttg gtataaacat
     7321 cggtgatttt cacatcgaca aatttgccaa tcatatccgg tgtgccaaca aagtttacta
     7381 cacggttagt ttcggttctg ccggttaatt ccatcaagtc tttcttagac gggccttcaa
     7441 ccaaaatgcg ttgttctgta ccgagcattg cacggctaaa ttgcattgct tggtggttga
     7501 tgcgttgttg taaacgggat aatcgctctt ttttctcatc atcggagaca ttatcaggca
     7561 gatctgccgc tggtgtaccc ggtcgagccg agtagataaa gctaaagctc atatcaaagt
     7621 tcacttgctc gatcactttc attgtttgct cgaaatcctc tgcggtttcg cccgggaagc
     7681 ctacaataaa gtccgaacta atttgaatct caggtcgaac agcacgcaat ttacggataa
     7741 tcgctttgta ttccaacgct gtgtggttac gcttcatcat tgttaataca cggtctgaac
     7801 cactttgaat cggtaaatgt aagaaactga ccaattcagg tgtatcacga taaacttcga
     7861 taatatcatc ggtaaattca atcgggtggc tggtggtgta acgtaagcgg tcaataccgt
     7921 caatcgctgc cactaagcgt aataattcgg caaaggtaca aatgccgcca tcaaaagttt
     7981 caccacggta agcatttacg ttttgaccga gtaaattaac ctcacgcaca ccttgtgccg
     8041 caagttgggc gatttcaaat aatacgtcat ccaccgggcg ggaaacctct tcgccacgag
     8101 tgtaaggcac aacgcagaac gaacaatatt tattgcagcc ttccataatt gaaacgaatg
     8161 ctgtagggcc ttcggctttt ggctccggca agcggtcaaa tttttcaatt tccgggaaag
     8221 aaatatcgac aatcgagctt ttaccgccac ggatttggtt gatcatttca ggcaaacggt
     8281 gcaaagtttg tggcccgaaa acaatatcta cataaggggc acgatcacgg atatgctccc
     8341 cttcttgtga agccacacaa ccgccaacac cgataatcag gttcggttta tcttttttcc
     8401 agtttttcca acgcccgagt tgcgagaata ctttttcttg tgctttttca cggatagaac
     8461 aagtgtttag cagcaacacg tctgcatctt cagggttttc agtcagttca aaaccgtgag
     8521 tagagtttag gagatccgcc atttttgatg agtcgtactc attcatttgg cagccccaag
     8581 tggtaatatg taatttagcc ataacgttta aaattaataa ataattcaat aacttagaaa
     8641 agaaaagcgt aaagcaattt attatttttg acttaaaata aaccctttac gcaaaatttg
     8701 tggcgttatt ttaccttgtt gcctattttt tatctataaa taatcgccat ttatccgatt
     8761 ttacctaaaa caaaaaagcc acgatcttcc atcgtggctt ccagctaagt aggaggtatt
     8821 atttggttaa ggttaaaacc acgctttcac cggcaacaac ttggccattt aatttagata
     8881 agttgctgat ttcatccata tttgaaatca cgattggtgt taatactgat ttggctttgc
     8941 cttcaagtag agctaaatca aatttaatga tcggctcgcc cacttttacg gtttgacctt
     9001 cctgtgcaag gcgagtaaag ccttcgcctt ttaattcaac agtatcaata ccgaagtgaa
     9061 caaataattc cacgccttct tcagattcaa tcgaaaaagc gtggttggtt tcaaaaattt
     9121 tgccgatagt cccatttact ggagcaacga tagtgtctcc actcgggcga attgccacac
     9181 cgtcacctac aattttttca gagaaaacaa catcaggcac atcttcaata tttacgattt
     9241 cacctgttaa tggcgcatag attttgattt cttgactctc tttttgtttt gagccgaata
     9301 atttatcaaa taaacccatc ttaaaatctc ccttagatat tagatacaaa attctcgtac
     9361 attttatacg agaattttgt atttgtatgc taaata
//
LOCUS       DANLRW010000094         9396 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.095, whole genome shotgun sequence.
ACCESSION   DANLRW010000094 DANLRW010000000
VERSION     DANLRW010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9396
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.095"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..468)
                     /locus_tag="PXA71_001972"
     CDS             complement(<1..468)
                     /locus_tag="PXA71_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HDL5106052.1"
                     /translation="MHLNFKKIDNSHIALFYNVLVATFFVTVLTFKKGYSYVPMALGI
                     IATLSFLFYRFKLKQKWLLDKEDKFFIFSLIGYFLTFAMSAIFNGDGIREIDNPIQIL
                     LLIPLIILFRLYPIKKETVLHFIPIGALVAGCIAIYQRFILNLKFPFPEIMRIQ"
     gene            610..1206
                     /locus_tag="PXA71_001973"
     CDS             610..1206
                     /locus_tag="PXA71_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uma2 family endonuclease"
                     /protein_id="HDL5106053.1"
                     /translation="MSLLPMNEITSLNQLDLQKSYSYADYLLWKFKERVEIIKGKIVA
                     MSPAPTRFHQRISMKMTAKFLEVFDNHQCQIYSAPFDVRFPDENGKVKTVVQPDLCVI
                     CDVSKLDERGCVGAPDLVVEILSPGNTKREMKDKYELYQEQGVKEYWIVSPETRTIQI
                     FVLENGKYIGIQPVAEDEPATSVVFPALSFSTEKLFEL"
     gene            1354..1569
                     /gene="rpsU"
                     /locus_tag="PXA71_001974"
     CDS             1354..1569
                     /gene="rpsU"
                     /locus_tag="PXA71_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDL5106054.1"
                     /translation="MPVIKVRENESFDVALRRFKRSCEKAGILAEVRAREFYEKPTTI
                     RKREKASLAKRHAKRNFRENARNTRLY"
     gene            1723..3471
                     /gene="dnaG"
                     /locus_tag="PXA71_001975"
     CDS             1723..3471
                     /gene="dnaG"
                     /locus_tag="PXA71_001975"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL5106055.1"
                     /translation="MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGRDYQACCPFHH
                     EKTPSFSVSQSKQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENV
                     IQRDGKPQANFKTKRNLYELMEAVAKFYQQNLSHQIEPQSYLQQRGLSEEIIERFEIG
                     FAPNAFDAALRTFGQSQEDIQKLLDTGVLTKNDSGRIYDKFRNRVMLPIRDKRGRVIA
                     FGGRVLPNDEQGAKYMNSPETVIYHKGSELYGLYQALKVNETPDYLFVVEGYMDVVAL
                     AQFGVDNAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQD
                     GRQLKFIFLPDGEDPDTFVRSQGKEGFEQYVAQNAKPLSDFLFDSLLADVDLSSKEGK
                     SKLAALAVPLINRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVK
                     MKRTPMRLLIALLIQNPYFVKFVPDVSALASLKDPGFTLLTDIVATCQQNAGISMGGL
                     LEHYREDPQYKIVEALANWDHLELPENIERTFIDTLDFLYAKLVELRKEELIAKDRTV
                     GLTDDEKKEYALLMFQ"
     gene            3730..5601
                     /gene="rpoD"
                     /locus_tag="PXA71_001976"
     CDS             3730..5601
                     /gene="rpoD"
                     /locus_tag="PXA71_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDL5106056.1"
                     /translation="MENQADQQLEQQSQLELLISQGREQGYLTLSEVHDHLPEELVDA
                     EQIEDIIQMINDMGIQVLEAAPDADDLLLAENIADEDVVEEATKVLSTVESELGRTTD
                     PVRMYMREMGTVELLTREGEIDIAKRIEEGINEVQCAIAEYPEALSGLLACYAQVETG
                     EMRLSDLVTAFVDPNILEEAPLEDIEAALGEDEESSDVPDVDDENEDENGDSSSDSSD
                     DSSIDPELAREKFEALRSQHEKVLLVIQKHGRTSKKSKEQIEILSHIFREFRLVPKQF
                     DLLVASMQKLMKQVRTEERQIQRYAVEYAGMKKADFLKAFQGHELSEAWIEKAINAKK
                     NAAPKLANYVDNIRVNIANLQNLEQTSGLTIAQIREIGGRISNGELKARRAKKEMVEA
                     NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT
                     RSIADQARTIRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVL
                     KIAKEPISMETPIGDDDDSHLGDFIQDESLELPLDSATAESLRMATNEVLEGLTPREA
                     KVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDD"
     gene            5695..6681
                     /locus_tag="PXA71_001977"
     CDS             5695..6681
                     /locus_tag="PXA71_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3298 domain-containing protein"
                     /protein_id="HDL5106057.1"
                     /translation="MKKSLLALLIGSVFLISACEDGKMTQTVLEAEKQIVQLGTELKN
                     AQADLAKKEAEVAELSGVKAENEKLKSELENAQQNTALNVEIVKIFDKKEVIKHQVDP
                     KQEFAIEESTVSAFVSLPKTNFDWLNQLLINQAYDYNEEQGRKLKNPTEEEFKKHREA
                     VYQGLVESVKTEPAIGYDDHISSAFIGQRNNIATFTMMHYTYMGGAHGMHYTQYINVD
                     LAKKAIIGLNDLISPKNQVQLKDILWENYSSVRVDENGNYNGFADKKEFRISDQFYFT
                     PHGIAFVYPPYELGAYAEGDIEVEADWYIINKLLNSEYQRGEKDGFFEELDN"
     gene            complement(6757..7665)
                     /locus_tag="PXA71_001978"
     CDS             complement(6757..7665)
                     /locus_tag="PXA71_001978"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HDL5106058.1"
                     /translation="MNKNSLFSIWFTTARPKTLPLALASIIVGSALAHWAGKFDVVTT
                     LLAFITTILLQILSNFANDYGDHVKGSDTKERIGPLRAIQHGVIGGEQLKKAVIILSL
                     LSFVSGVALSAYAFETVQDLFFFIGLGIVSIIAAITYTVGKKAYGYLGLGDLFVLIFF
                     GFVAVIGVFYLQAHSLPIMILLPAFGCGLLSVAVLNINNLRDINQDRQAGKNTLIVRI
                     GSQNGRKYHVALLVLAVISYLIFAISEFEHWYSFIFLLSVPLLAKHARFVYQHKDPKE
                     LYPILGQMAGLALLTNLLFSLGIVLG"
     gene            7845..8582
                     /gene="tsaA"
                     /locus_tag="PXA71_001979"
     CDS             7845..8582
                     /gene="tsaA"
                     /locus_tag="PXA71_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HDL5106059.1"
                     /translation="MNSTSNQLTPIQLNPIGFVESPYDEKFSVPRQPNLVAEGKGILR
                     LIPPYNTPDAVRGLEKFSHIWLIFQFHHIPEREWHATVRPPRLGGNERVGVFASRATH
                     RPNPLGLSKVKLEAVVAGGSEVYLKLGSVDLVNGTPIFDIKPYIAFADSEPQAVSGFA
                     QQKPQARLAVRFSEEAKQAVEFCRNFAKFGIEQPLSFLADVIAQDPRPAYQQGKPSER
                     VYGMNLAGYNIRWQIENDTQAIVLSIE"
     gene            8640..9359
                     /locus_tag="PXA71_001980"
     CDS             8640..9359
                     /locus_tag="PXA71_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253715.1"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HDL5106060.1"
                     /translation="MKLKNFLTILPLAVATAVTSAETHTVEHKDKPASFNFSTEVSRT
                     VEKDVMQASVYSQKSGNSLPELKKFVSENLNRVLAEAKKHPSIEVQAEGVTNHVNYNN
                     KGNIDGWDTSGSIQLKSKDFDAMAAVLENLGKDVAIRYIDFSVSPEKMASLEDEMTLE
                     IISKFQHKADVIQKALGAKTYKLVNINIQTPNDGGRPYYEHRAMYAVSSMAQSKSMDE
                     IPLEAGKTTISATASGSVEFE"
BASE COUNT         2986 a         1740 c         2098 g         2572 t
ORIGIN      
        1 ttgaatacgc attatttcag ggaaaggaaa tttaagattt aatataaacc tctgatatat
       61 tgctatacaa ccagctacca acgctccaat cggtataaag tgcaatacag tttctttttt
      121 aatcgggtaa agtctaaaga ggatgattaa agggataagc aataaaatct ggataggatt
      181 atcaatttca cgaatgccat cgccattaaa aatagcagac attgcaaacg ttagaaaata
      241 gccaataagc gagaaaataa aaaatttatc ctctttatca agtaaccact tttgttttaa
      301 tttgaaacga taaaataaga aactaagtgt agcgataata cctaatgcca ttggcacata
      361 actataacct ttcttaaagg ttaaaacagt gacaaaaaat gtggcgacta gtacattata
      421 gaaaagagca atatgtgagt tgtctatttt tttgaagtta aggtgcatcg acatatccta
      481 aaacaatgaa aattgctgtc attttatact aagggtataa aggttatcta tctcttttta
      541 gcgaaagttt tgttgaattt gagggattat tcggcataat atctttatat ttctgataaa
      601 ggaggcggta tgagcttatt accaatgaac gaaattacca gcttaaatca actggactta
      661 caaaaaagtt acagttacgc tgattatttg ctatggaaat ttaaagagcg ggttgagatt
      721 atcaaaggga aaattgtggc gatgtctccg gctcctactc gttttcatca gcgaatttct
      781 atgaagatga cagcaaaatt tttagaggtt tttgacaatc accaatgcca gatttattct
      841 gcgccttttg acgttcggtt tcccgatgaa aacggaaaag tcaaaactgt agtgcagcct
      901 gatctttgtg taatttgtga tgtcagtaag ttagatgaaa gaggctgtgt aggggcaccg
      961 gatttagtgg tggaaatcct ttctccgggt aataccaaaa gggagatgaa agataaatac
     1021 gagctttacc aggaacaagg ggtgaaagag tattggattg tttctcccga aacccgcact
     1081 attcagattt ttgtgttgga aaacggtaaa tatatcggta ttcagccggt ggcagaagat
     1141 gaaccggcaa cttcggtggt ctttccggca ttaagttttt cgaccgagaa attattcgaa
     1201 ctgtagaaaa atgcaacata atacggcggt tttatgccac aatactactt tacttatgtg
     1261 agtgcttaag gtagaatgca ctaccttttt tgttctatgc cgccaaaatt gtgtgcggtt
     1321 taatttaatc atatttttct gaggtgatgg catatgccag taattaaagt tcgtgaaaat
     1381 gaatcatttg acgtagcatt acgtcgtttc aaacgctctt gcgaaaaagc gggtatctta
     1441 gctgaagttc gtgctcgtga attctacgaa aaaccaacta caattcgtaa acgtgaaaaa
     1501 gcatcacttg ctaaacgtca cgctaaacgt aatttccgtg agaacgcacg taacacacgt
     1561 ttatactaat tagttaggct ggttagcaaa ctatatcgaa accgtgattc cgttaggctc
     1621 acggttttgg tgtttttaac gtttctattt caagcggttg ttttttgcaa aaaatttgca
     1681 aaattgctcc gcttgtatca ttcaaagagc aggaggaaat caatgaaagg cacaattcca
     1741 cgttcattta ttgatgatct tatcgctcgc accgatattg ttgaggtcat caacagtcgg
     1801 gtcaaactca aaaaggctgg gcgagattat caagcctgct gtccttttca tcacgagaaa
     1861 accccttcct tttcggtaag ccaatcaaaa cagttttacc attgtttcgg ctgtggcgta
     1921 cacggcaatg tcatcacctt tttgatggat tatgacaaac tcgaatttcc ggaagcgatt
     1981 gaagaactgg cagctatgca cgggctggaa gtaccgagag agaatgtgat tcaacgtgac
     2041 ggcaagcctc aagctaattt taaaactaag cgtaatcttt atgaattgat ggaagcggtg
     2101 gcgaagttct accagcagaa tttatcgcac cagattgagc cacaaagcta tttacagcaa
     2161 cgaggtttgt ctgaagagat tatcgaacgc tttgaaattg gttttgctcc gaatgccttt
     2221 gatgcagccc tacgcacttt tgggcaatca caagaagata ttcagaaatt gctcgatacg
     2281 ggcgttttaa ccaaaaatga tagcggtcga atttacgata aatttcgcaa tcgggtaatg
     2341 ttaccgattc gagataagcg tggacgggta attgcctttg gtgggcgggt gttgccgaat
     2401 gatgagcaag gggcgaaata tatgaactcg cccgaaacgg tgatttatca taaaggcagt
     2461 gagttatatg gcttgtatca agcactgaaa gtcaatgaaa cgccggatta tctgttcgtg
     2521 gtggaaggct atatggacgt ggtcgccctt gcccaattcg gcgtggacaa tgcagtcgcc
     2581 tctttaggca cggcaactac cggtgaacaa attcagcaaa tgtttcgttg caccgagcaa
     2641 attgtctgtt gttatgatgg cgatagagcc ggtcgagatg cagcttggcg ggcgttagaa
     2701 aatgcgttgc cttatttgca agacggtcgc caactgaaat ttattttctt gcccgatggc
     2761 gaagacccgg acacctttgt tcgttctcaa ggtaaagaag gatttgagca gtacgtggca
     2821 cagaatgcca agccattaag cgatttctta tttgacagtt tgctggcgga tgtggatctc
     2881 tcttcaaaag agggaaaatc caagctcgct gctttagctg tgccgttaat taatcgtatt
     2941 ccgggcgaga tgctgcgagt gtatttacgc aatattttag gacagaaatt aggcatttta
     3001 gacccaacgc agatagaagc tctgttaccg acgaaaaaag cggcagagaa gcctttacat
     3061 caagcggtca aaatgaaacg tacgccaatg cggctgttga ttgcgttatt gattcaaaat
     3121 ccgtattttg tgaaattcgt acccgatgta agtgctttag cctccttgaa agatcctggc
     3181 tttacattat taaccgatat tgtcgcaact tgtcagcaaa atgcaggtat cagtatgggc
     3241 gggctacttg aacattatcg ggaagatccc caatataaga ttgttgaagc cctcgcaaat
     3301 tgggatcatt tagagttacc cgaaaatatc gaacgaacat ttattgacac tctcgatttt
     3361 ctctacgcca aattagtgga attacgcaaa gaagagctaa ttgccaaaga ccgaaccgtg
     3421 ggcttaaccg atgatgagaa aaaagagtat gctcttttga tgtttcagta gaattttaag
     3481 ctcgaataat tcccctcttt agcaaagagg ggttagggga gatttggcag aagtgatgaa
     3541 cgaagaaaat aattaattct atctaaaaag aaagttattt atctctcttg ctacacctct
     3601 ctgttctcat aagcatcaaa gtaatgtgta aattagaaaa atagaatttt tttgtgaatt
     3661 tatgaagtcg aaccaaattt agtggtataa tccactacta tttttgctcg cataataaac
     3721 ggatagacta tggaaaacca agcagatcaa caattagaac agcaatctca attagaactt
     3781 ctgatcagtc aagggcgtga acagggatat ttaacgcttt ctgaagtgca cgaccactta
     3841 ccggaagagt tggtggatgc ggagcagatc gaagatatta ttcagatgat caacgatatg
     3901 ggtatccaag ttttagaggc tgcccctgat gcggatgatt tactactcgc tgaaaatatc
     3961 gccgatgaag atgtggtaga agaagccacc aaagtgcttt caaccgtaga atcagagtta
     4021 ggtagaacta ctgaccctgt gcgtatgtat atgcgtgaga tggggacagt tgagctttta
     4081 acccgtgaag gtgagattga tatcgctaaa cgcattgaag aagggattaa cgaagttcaa
     4141 tgtgcgattg cggaatatcc ggaagcctta agtggcctgt tagcctgcta tgctcaagtc
     4201 gaaaccggtg aaatgcgcct ttctgattta gtgacagcat ttgtcgatcc taatatttta
     4261 gaagaagcac cgttagagga tattgaggct gctttaggtg aagatgaaga atcttctgat
     4321 gtgcctgatg tagatgacga aaacgaagat gaaaacggtg atagcagttc agacagcagt
     4381 gatgacagct caattgaccc ggaacttgcc cgtgaaaaat ttgaagccct acgcagccaa
     4441 catgaaaaag tgttattggt cattcaaaaa cacgggcgaa ccagtaaaaa atcgaaagag
     4501 caaattgaaa ttttatctca tattttccgt gaattccgtt tggtgccgaa gcaatttgac
     4561 ttattggttg cttctatgca aaaactgatg aagcaggttc gcactgaaga acgtcaaatt
     4621 caacgctatg cagtggaata tgccggcatg aaaaaagcgg atttcttgaa agcattccaa
     4681 gggcacgaat taagcgaagc gtggattgaa aaagcgatta atgccaagaa aaatgcagca
     4741 ccgaaattag ctaattatgt ggataatatc cgtgtcaata ttgctaactt acagaattta
     4801 gagcaaacat caggcttaac cattgctcaa attcgtgaaa ttggcgggcg tatttccaat
     4861 ggtgagttaa aagcccgccg tgcgaaaaaa gagatggtgg aagctaactt acgtttggtg
     4921 atttcgattg cgaaaaaata cactaaccgt ggcttgcagt tcttagattt aatccaagaa
     4981 ggaaacatcg gtttaatgaa agcggtggat aaatttgaat accgccgtgg ttataaattc
     5041 tcgacttatg caacttggtg gattcgtcaa gcgattaccc gttcgattgc tgaccaagcc
     5101 cgtacaattc gtattccggt gcatatgatt gaaactatca acaaactcaa ccgtatttca
     5161 cgccaatgtt tacaagaaat ggggcgtgag gcaacgccgg aagaactggc agaacgtatg
     5221 ggaatgccgg aagataaaat ccgcaaagta ttgaaaattg ccaaagagcc gatttcaatg
     5281 gaaacaccaa tcggtgacga tgacgattca catttaggtg atttcattca agacgaaagc
     5341 cttgaattac cattggattc cgccactgcg gagagcctgc gtatggcaac gaacgaagtg
     5401 ttagagggct taaccccgcg tgaagcgaaa gtgttgcgta tgcgttttgg tattgatatg
     5461 aacacagacc acacactcga agaagttggt aaacaatttg acgtaactcg tgaacgtatc
     5521 cgccaaattg aggcgaaagc actgcgcaaa cttcgccacc cgagccgttc ggaaacctta
     5581 cgcagtttct tagacgacta atcatttccc ctatgcctga tggtataggg gattttgttt
     5641 taatctgtat aacaagcggt gatatttacc gtatttttta caaaagaggg agagatgaaa
     5701 aaatcactat tagcactttt aattggctca gtatttctga tttcagcttg tgaagacggc
     5761 aaaatgaccc aaacggtatt agaagccgaa aaacaaattg ttcagttagg cacagaatta
     5821 aaaaatgctc aggctgattt agcaaaaaaa gaggctgaag ttgcagaact ttcaggggtg
     5881 aaagcagaaa atgaaaaatt aaaatcagag ttagagaacg ctcagcaaaa cacagcgtta
     5941 aatgttgaaa ttgtgaaaat ctttgataag aaagaggtga ttaagcacca agttgatccg
     6001 aaacaagaat ttgcaataga agaaagtaca gtaagtgcgt ttgtgtctct accaaaaacc
     6061 aattttgatt ggcttaacca gcttttgatt aatcaggcct atgattacaa tgaagaacaa
     6121 ggcagaaagc tgaaaaatcc aaccgaagaa gagtttaaaa agcatcgtga agcggtttat
     6181 caagggttgg tagaaagtgt gaaaaccgag ccagctattg gctatgatga tcatatttcc
     6241 agtgctttta tcgggcaacg caataatatt gctacattca ctatgatgca ttacacctat
     6301 atgggtgggg ctcacggtat gcactatacg caatatatca atgtagattt agctaaaaaa
     6361 gcaatcattg gcttaaatga tttaatcagc ccaaaaaatc aagttcaact gaaagacatt
     6421 ctttgggaaa attacagtag cgtgcgtgtg gatgaaaatg gcaactataa tggatttgct
     6481 gataaaaaag agttccgtat ttctgaccaa ttctacttta cccctcacgg cattgctttt
     6541 gtttatccgc catacgaatt aggtgcttat gcagaaggcg atatagaggt tgaagcggat
     6601 tggtacatta ttaataagtt gctcaattcg gagtatcaac gtggcgaaaa agatggattc
     6661 tttgaagaac tagataacta attgtaaatt tagataaaaa acaaccgctt gtaatccttt
     6721 attacaagcg gtttagtttt gttaaaattt tgcaacttac cctaacacaa tgcccaaact
     6781 aaataataga ttagtgagca acgccagccc tgccatttgc cctagaattg ggtagagttc
     6841 ttttgggtct ttatgctgat agacaaaacg agcgtgtttt gccagtaacg gtacagacag
     6901 caaaaaaatg aagctatacc aatgttcaaa ttcagaaatt gcaaaaatca gataagaaat
     6961 gaccgctagc actaacaatg caacgtggta ttttcgcccg ttttggctac cgattcgtac
     7021 aatgagagtg tttttcccag cttgtcggtc ttggttaata tcacgcaagt tattgatatt
     7081 taacactgct acagacagca atccgcaacc gaaagcaggg agcagaatca ttataggtag
     7141 gctatgagcc tgcaagtaga acacgccgat taccgctaca aagccaaaga aaatcagcac
     7201 aaatagatcg cccagcccca aatagccgta ggcttttttg ccgacggtgt aagtaatggc
     7261 ggcaataatt gagacgatgc caagcccgat aaagaaaaac agatcctgca ctgtttcaaa
     7321 agcataggca cttaaggcaa caccggaaac aaacgagagt aggcttaaga taatcacggc
     7381 tttcttaagt tgttcaccgc caataacacc gtgttgaatc gcccgtagcg gtccgattcg
     7441 ttctttggtg tcagagcctt tgacgtggtc gccgtaatca ttggcgaagt tagacaggat
     7501 ctgcaacaaa atggtggtga taaatgcgag taaggtggta acaacatcaa atttccctgc
     7561 ccaatgagca agtgctgaac ccacaataat tgaagctaac gccagcggta aagttttcgg
     7621 gcgagcggtg gtaaaccaaa tcgaaaagag agaatttttg ttcatagaga ataatcttag
     7681 cgtaatttca tttacaatga tgttaaggat ttaagcgata gtgcaagcgt ccactcttgt
     7741 gttaaatggt aaaacgaatt ggtacaagcg tggacgcttg caccatcctc aatttcatat
     7801 cattatgtcc aatattttat attattttaa cagaaaaaag cgtaatgaac tctacctcaa
     7861 atcaactaac cccgattcaa ttaaacccta tcggttttgt ggaaagcccc tatgatgaaa
     7921 aattttccgt gcctcgccag ccgaatttgg tagcggaggg gaaaggcatt ctacgtttaa
     7981 ttccgcctta caataccccc gatgcagtca gaggcttgga gaaatttagt catatttggt
     8041 tgattttcca attccatcac attcccgaaa gagagtggca cgccaccgtc agaccgcctc
     8101 gcttgggcgg gaacgaacgg gtcggggtct ttgccagccg tgccacccat cgtccgaatc
     8161 cgcttggctt atcgaaagtg aagttagaag cggtagtggc gggggggagt gaagtttatt
     8221 tgaaattagg cagcgtggat ttagttaacg gcacaccaat ttttgacatc aagccttaca
     8281 ttgcatttgc agatagcgag ccgcaagcgg tttccggttt tgctcagcaa aaaccacaag
     8341 caagattagc ggtgcgtttt agcgaggagg caaaacaagc tgtcgaattt tgccgaaatt
     8401 ttgcaaaatt tggcatcgaa cagccgctta gttttcttgc cgatgtcatc gcccaagacc
     8461 ctcgcccggc gtatcaacaa gggaaaccta gtgagcgagt ttatggtatg aaccttgccg
     8521 gctacaatat tcgctggcaa attgaaaatg atacacaggc gattgtgctt tcgattgaat
     8581 gaactttcct acgcaagtga gatctaagaa atgattttta acccttttaa ggactgatta
     8641 tgaaattgaa aaattttctt accattctac cgcttgcagt cgcaacagcg gtaacttcag
     8701 cggaaactca taccgtggaa cataaagata aaccggcttc ttttaatttc tcaaccgaag
     8761 tctctcgcac ggtggaaaag gacgtgatgc aggcaagtgt gtatagccaa aaatcaggta
     8821 actccttgcc ggagctgaaa aaatttgtat ctgaaaacct gaatcgtgta ttggctgagg
     8881 caaaaaaaca tccatcgatt gaagtacaag ctgaaggtgt gactaatcac gttaattata
     8941 acaacaaagg gaatattgat ggttgggata cctctggtag cattcagttg aaaagcaaag
     9001 attttgatgc aatggcagcg gtgttggaaa atttaggtaa agatgtggcg attcgttaca
     9061 ttgattttag tgtatcgcca gagaaaatgg cgtcccttga agatgaaatg acgctggaaa
     9121 ttatcagcaa atttcagcat aaagccgatg tgattcaaaa agccttaggg gcgaaaacat
     9181 ataagctagt taatatcaat attcaaactc caaatgatgg tggtagacca tattatgaac
     9241 acagagcaat gtatgcagtt tcatcaatgg cacaaagcaa atctatggat gaaatcccgt
     9301 tagaagcagg taaaaccaca atttcagcta ccgcttcagg aagtgtggaa tttgaataga
     9361 aatgtataga tttgtataga gttgtatttt tacttt
//
LOCUS       DANLRW010000095         9395 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.096, whole genome shotgun sequence.
ACCESSION   DANLRW010000095 DANLRW010000000
VERSION     DANLRW010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9395
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.096"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..633)
                     /locus_tag="PXA71_001981"
     CDS             complement(<1..633)
                     /locus_tag="PXA71_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HDL5106061.1"
                     /translation="MAEGLLLTPYFQTEVGIVFYKVPKDVSPAAFGERTLLQPAPTDL
                     ATVKSGKVANFSANSTACKELAVFAKSAKVRSTLNQRDKYSNDLPYIRFVKSIQTCQC
                     RDGKYCHTEKVLVENKNGAVQLCWHHDKMRMDGEIPNEKLEALADENWEKFIAQQIRL
                     TLRKTQSTAIEFADLVLFASIKGLLDELDSKALQQFLGYPPLNNSGVSKES"
     gene            complement(760..1353)
                     /locus_tag="PXA71_001982"
     CDS             complement(760..1353)
                     /locus_tag="PXA71_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine methyltransferase"
                     /protein_id="HDL5106062.1"
                     /translation="MTDFDKNTYQTPNYVRNWLNHRYAWFHIDGCSNGQNTLYTYWIG
                     RAADGLDDDKLSCQIADDFLADDLFDVLLDKVSDWGELLRIFVNPPYSDPLPFVQRAA
                     ELKKAGHLVVMLLPADKTTEWYTIIQQHANEVIDIIGYHDEKGTWRTGRIQFINPVTG
                     KPAQGNNKGSMIVVFDPFIEGIVTRQMPLDKIKEWGK"
     gene            complement(1364..2410)
                     /locus_tag="PXA71_001983"
     CDS             complement(1364..2410)
                     /locus_tag="PXA71_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conserved phage C-terminal domain-containing
                     protein"
                     /protein_id="HDL5106063.1"
                     /translation="MRFTSTINNVRLVEWEINITQGALVDLINQASSWAKAVVIDGIT
                     YYWMSFSKVCEELPAVFSKEDTVYRQYKVLKEKGIIDHFKMDGKDYVRLTEKGCEWNK
                     FEPIRESEKNPSIGNNSEQTRKNFRESSEKNPTDNNTNYKNNNDHTTPLNPPAGEPAP
                     AEVVLNYLNSALVTLAVQLGERKPVGYSLKPWAKNITARIRESSVADCCQVVDYLVAK
                     WGRDEKMREYLCPKTIFRQSNFADYFPKSTAWANNGKPVCVNGKWVTPAELEKRLIMP
                     TVDEVRALFQKSLSGNPFKALDFTNKRNLVMYHATINTRNKRPLERDLPMIISQEIKN
                     AVERIDRLRVPTFS"
     gene            complement(2407..3090)
                     /locus_tag="PXA71_001984"
     CDS             complement(2407..3090)
                     /locus_tag="PXA71_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory protein/antirepressor Ant"
                     /protein_id="HDL5106064.1"
                     /translation="MNQLLNISAPKASITMSSREIAELCEKEHRHVTRDIEAMFSQLD
                     IPAEGYAHFWTHPQNGQTYREFRLPYDLTLTLISGYSVILRKKIIDRWQELESRQGIP
                     QSFSQALRLAAEQQEVIEQQNHQLAIQAPKVAFVEHYVEVGTTKSLRETAKILNFPEK
                     RLIECLERYRVLYRQSGNLLPYQDKQAKQLFAVKTGTAEHGHNFTQTRVTAKGIEWIA
                     QRYASELGQ"
     gene            complement(3148..3336)
                     /locus_tag="PXA71_001985"
     CDS             complement(3148..3336)
                     /locus_tag="PXA71_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cro/Cl family transcriptional regulator"
                     /protein_id="HDL5106065.1"
                     /translation="MKKDDVLEHFGTLEKVAATLGISVSAVSQWGEIIPEKNAYRLQE
                     ITAGKLKVKHSLYRNRSK"
     gene            3461..4117
                     /locus_tag="PXA71_001986"
     CDS             3461..4117
                     /locus_tag="PXA71_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5106066.1"
                     /translation="MNTQTLGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTT
                     KPNSENILDLSTVLQCDISWLLRGNGESNVLPASLGMTKVPLISYIQAGQWTGIDDFR
                     ETCGDYEYILTDLEVSEDAFALEIKGDSMEPDFIEGDRVIIDPDVQPHAGEFVAAING
                     DYEATFKKYRPLEDLDEYGRQHFELIALNPDYHKLSTLKQEIRIIGTMVEHRIYRRKR
                     "
     gene            4129..4503
                     /locus_tag="PXA71_001987"
     CDS             4129..4503
                     /locus_tag="PXA71_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106067.1"
                     /translation="MTEFKDVKQAIVEAQLASTPKDKVVNDIMKGSAELLSANDIINR
                     LGIGADEFQELVNLPNHYLRINGGLGAAVYNTRRMFDTHVELVNQELEKNISFPKPDL
                     YILGKARWKKETFKKWLEEQCR"
     gene            4655..5392
                     /locus_tag="PXA71_001988"
     CDS             4655..5392
                     /locus_tag="PXA71_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL5106068.1"
                     /translation="MLSKQVLSISESRLSTYLFCFFRNDPTKQKEAIAIYTALQHRTG
                     IYFSLIQEIEVALRNEVSQLLRFAAPNHNLYEFFHFLANDSNAPLNAESKRQLQKAIS
                     ECGRNYNENDIISHISFGFWVNLFNYDIKRNQYVAYWQSVLKPIFGHRFSNFKDLYNT
                     LKQIMRFRNRLYHQEVVWNKRIAKKPTHALENLEKTYKQFELALQKIAPERFAFRQLS
                     QALIWQRQIFFDQQIFEAEIVILPQHI"
     gene            complement(5428..6024)
                     /locus_tag="PXA71_001989"
     CDS             complement(5428..6024)
                     /locus_tag="PXA71_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106069.1"
                     /translation="MKKLLMTLCCLPAFALANETGESCSKIEDSAKRLECYDSVFVKK
                     DTGKDEATDEKSNWEYEQKKDELRNATTYFAKIRSTNTIDFGFPYNSSSMNLMLRKDP
                     KYGNDVIFSVHGQFNGCMIESCKITVKFDDGKLESYRMIGADGGSNDTLFIENAKAMK
                     TFVDKLKKSKKLIVEASFYNYGKGQFTFDTQGLEWKHF"
     gene            6670..6855
                     /locus_tag="PXA71_001990"
     CDS             6670..6855
                     /locus_tag="PXA71_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106070.1"
                     /translation="MNKMKQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGFWQ
                     MESNGNQYCGGKYGTKN"
     gene            6839..7036
                     /locus_tag="PXA71_001991"
     CDS             6839..7036
                     /locus_tag="PXA71_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106071.1"
                     /translation="MARKIDAGVEIVEVDKRFIAKFFYDGKLQHTTYPQYNRQNAIML
                     INRKIERFNIGRDKPIKLYKE"
     gene            7039..8013
                     /gene="ssb"
                     /locus_tag="PXA71_001992"
     CDS             7039..8013
                     /gene="ssb"
                     /locus_tag="PXA71_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5106072.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDSVAKISVATSTEWTDKTS
                     GEKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSNSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIRVRWITKEQA
                     KQFINNISTDWMKTICSFALLTGARRTEILSMTWDKIDFIRKVAIVSNDIAKSEKARS
                     LLLNDDAIELLQKQRGKNPKYVFVGSKGQALQDINRKIFNKATEKCLLVDFHFHDLRH
                     TWASWHVQAGTPLFTLKELGGWETLEMVKKYAHLNADHLLNHANSVKF"
     gene            complement(8100..8176)
                     /locus_tag="PXA71_001993"
     tRNA            complement(8100..8176)
                     /locus_tag="PXA71_001993"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8140..8142),aa:Arg,seq:tct)
     gene            complement(8201..8277)
                     /locus_tag="PXA71_001994"
     tRNA            complement(8201..8277)
                     /locus_tag="PXA71_001994"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8241..8243),aa:Pro,seq:tgg)
     gene            8447..9307
                     /gene="folD"
                     /locus_tag="PXA71_001995"
     CDS             8447..9307
                     /gene="folD"
                     /locus_tag="PXA71_001995"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDL5106073.1"
                     /translation="MTAQIISGSEVSSQIKKKVSEKIAHYLEQGKRNPGLAVILVGND
                     PASQVYVGSKRKSCAEIGIASKSYDLPEETTEAELLALIEKLNQDDSVDGILVQLPLP
                     KQIDSTKVIEAILPHKDVDGFHPYNVGRLSQRIPTLRPCTPYGVMKLLETTGVDLYGQ
                     HAVIVGASNIVGRPMALELLLGGCTVTVTHRFTKDLEHHVRQADILVVAVGKPEFIPG
                     EWVKDGAIVIDVGINRGADGKLKGDVEYSVASQKAAFITPVPGGVGPMTVAMLMQNTL
                     QTYENHLQAV"
BASE COUNT         2863 a         1880 c         1841 g         2811 t
ORIGIN      
        1 actttctttg ctcacaccgc tattattcag tggtggatag ccgagaaact gctgtaatgc
       61 cttgctgtct aattcatcaa gcaaaccttt gatactcgca aacaacacta agtccgcaaa
      121 ttcaatagcg gtagattgcg ttttgcgtaa ggttaagcgg atttgttggg cgataaattt
      181 ttcccagttt tcatccgcta gtgcttctaa tttttcattc gggatttcac cgtccattcg
      241 cattttgtcg tgatgccaac aaagctgtac cgcaccgttt ttattctcta ccagcacttt
      301 ttccgtgtgg caatatttgc catctcggca ttggcacgtc tgaattgact ttacaaaccg
      361 gatataaggc aaatcattac tatatttgtc acgctgattt agcgttgaac gaacttttgc
      421 cgatttagca aacaccgcca gctctttaca agcggtcgaa tttgccgaaa aatttgcaac
      481 cttgcctgat ttaaccgtcg ctaaatcggt cggtgcaggt tgcaacaaag ttcgctcacc
      541 gaaagcagca ggagaaacat ctttaggcac tttgtaaaac acaataccca cttcggtttg
      601 aaagtaaggg gtaagtagca aaccttccgc cattattgcc cccatttctc ggtttcatca
      661 taggctttca cgaatagcat aaatacgcca atacagatta aaaaaatcag tacgccaatt
      721 actgcaccaa taccaataaa tagttcccaa taatccattt tatttacccc attccttgat
      781 tttatctagt ggcatctgac gagttacaat gccctcaata aatgggtcaa acacaacaat
      841 catcgagcct ttattattac cttgtgccgg tttacctgtt accgggttga taaattgaat
      901 ccgccctgtc cgccaagtgc ctttttcatc gtgatagcca ataatatcaa ttacctcatt
      961 agcgtgttgt tgaatgatgg tgtaccattc tgttgtttta tccgctggta ataacatcac
     1021 aaccaaatga cctgcttttt tcaattctgc cgctcgttga acaaaaggca gtggatcaga
     1081 atatggcgga ttaacgaaaa tacgcagtaa ttctccccag tctgaaactt tatctagtag
     1141 cacatcaaat aaatcatcgg ctaaaaaatc atcggcaatt tggcaactta atttatcatc
     1201 atctaaaccg tctgccgctc taccaatcca ataggtgtac aacgtatttt gtccgttaga
     1261 gcaaccgtca atatgaaacc aagcataacg atgatttagc caattacgca cataattagg
     1321 tgtttggtaa gtgtttttat caaaatctgt cattgtctaa tccttacgaa aatgttggta
     1381 ctctcaaacg gtcgatacgc tcaaccgcat ttttaatttc ttggctgata atcatcggca
     1441 aatcacgttc aagtggtcgc ttgtttctgg tgttgattgt ggcgtggtac atcactaaat
     1501 ttcgtttgtt ggtaaagtcc aatgccttaa acggattgcc actgagtgat ttctggaaca
     1561 aggctcgtac ttcgtccacc gttggcataa tcaagcgttt ttccagctcc gccggtgtaa
     1621 cccacttacc atttacgcaa acaggctttc cgttattagc ccaagcggtc gattttggaa
     1681 aataatctgc aaaattcgat tggcggaaaa tcgttttcgg gcagaggtat tcacgcattt
     1741 tttcatctcg tccccattta gcgacaaggt aatccaccac ttggcaacag tccgccaccg
     1801 aactttcacg aatgcgagca gtaatatttt ttgcccacgg cttgagcgaa taccccacag
     1861 gcttacgctc accaagctgt accgccaacg ttaccaaagc cgaattgaga taattcaaca
     1921 caacttcagc cggggcaggt tcccccgctg ggggattaag gggggtagta tgatcattat
     1981 tatttttata attagtatta ttatctgtcg gatttttttc cgagctttct cggaaatttt
     2041 tccgagtttg ttcggagtta tttccgatac tcggattttt ttccgactca cggatcggct
     2101 cgaatttatt ccattcacaa cctttttcgg ttaaacggac ataatcttta ccgtccattt
     2161 tgaagtggtc gataatgcct ttttctttca acaccttata ttggcggtaa actgtatctt
     2221 ctttgctaaa aaccgcaggt aactcttcgc aaaccttgct aaatgacatc cagtaatagg
     2281 ttatgccgtc aataaccacc gctttcgccc aactggaggc ttgattgatt aaatcgacca
     2341 atgccccttg tgtaatattg atttcccatt ccactaagcg gacattgttt atggttgatg
     2401 taaatctcat tgtcctaact ccgatgcgta acgttgagca atccattcaa tccctttggc
     2461 ggttactctc gtttgggtaa aattatgacc gtgttctgcc gtgccggttt ttactgcaaa
     2521 aagctgttta gcttgtttat cttgataagg gagtaggttt cctgattggc gataaagaac
     2581 tcgatatcgt tctaaacatt caatcaaccg cttttctgga aaattgagta tcttggcggt
     2641 ttctcgcaat gatttagtcg ttcccacctc aacataatgc tccacaaatg cgactttcgg
     2701 ggcttgaatg gctaattgat gattctgctg ctcaatcact tcttgctgtt ctgccgccaa
     2761 ccgtagagct tgagagaaag attgtggaat accttgtctg ctttctagct cttgccaacg
     2821 gtcgataatt ttcttgcgaa gtatcacgct atagccggaa attagggtaa gggttaaatc
     2881 gtaaggcaat cgaaattccc ggtatgtttg cccattttga gggtgtgtcc aaaaatgggc
     2941 atacccctcg gcaggaatat ctaattgact aaacatcgct tctatatcac gagtaacgtg
     3001 tcgatgttct ttttcgcaca actcagcaat ctcacgacta ctcatcgtaa tgcttgcttt
     3061 tggtgccgaa atgtttaata attgattcat cgaaaatacc tttcgtgttt aattatgtat
     3121 gaaagccacc gttacagcgg tggtttttta tttgcttcta tttctataaa gtgagtgttt
     3181 gacctttaac ttgccggcag tgatctcttg taatctgtac gcatttttct caggaataat
     3241 ctcgccccat tgagaaacag cagatacact aatccctaaa gttgccgcca ctttttctag
     3301 agttccgaaa tgttcgagca catcatcttt tttcatattt tcttaattcc tttcttgaat
     3361 tttatttaag acctcttaaa tatacaatta aaggaaactt aagtcaataa atgttaagat
     3421 aacttaacag caactttatt tttaccttta aggggatact atgaatactc agaccttggg
     3481 cgatagaatt aaaagccgta gaaaagaatt aaaattgaca cagaaagatc ttgctactgc
     3541 gttaaaaggg gtctcacacg ttgcagtatc tcaatgggaa agtagtacga ctaagccaaa
     3601 ttcagagaat attttggatt tatctacagt attgcaatgc gatattagtt ggctcttgcg
     3661 tggtaatgga gagtctaatg ttctacctgc tagcctcggt atgactaaag tcccattaat
     3721 tagctatatt caagccggac aatggacggg aattgacgat tttcgtgaaa cctgtgggga
     3781 ttatgaatat atcctaactg atcttgaggt gtctgaagat gcttttgccc tagaaatcaa
     3841 aggggactcg atggagcctg attttattga aggagaccga gtaattattg atcctgatgt
     3901 acaacctcac gccggtgagt ttgtggcagc aattaatggc gattatgaag ccactttcaa
     3961 aaaataccgt ccgttagaag acttagacga atacggaaga caacattttg agcttatcgc
     4021 tcttaatccg gattaccata aattatcaac gctaaagcaa gaaatcagaa ttatcggcac
     4081 aatggtagag catcgtattt atcgtagaaa gagataggaa ttgataatat gacagaattt
     4141 aaagatgtaa aacaggcgat tgtagaagct caattagctt cgacacctaa agataaagtc
     4201 gttaatgaca taatgaaagg aagtgcggaa ctgctttcag caaatgatat tatcaatagg
     4261 ttaggtattg gggcagatga gtttcaagag ttggttaatt tacctaacca ttatttgcgt
     4321 ataaatggag ggttaggtgc tgctgtgtat aatacaagaa gaatgtttga tacccatgtt
     4381 gagttagtca atcaagagtt agaaaagaat atttcatttc ctaaacctga tttatatatt
     4441 ttggggaaag ctcgttggaa aaaagaaaca tttaagaaat ggttggaaga acagtgtaga
     4501 taaagaaaag gtaggttaaa aaacctacct tttctgaacc gcaaataagc gattctcaca
     4561 ctttacaaag caatccagct cctacgtctg gggcttcggg tccgttgcca gtgcaagtat
     4621 tattacatta aactaaactt gagtaaagga aaatatgttg tccaaacaag tgctaagtat
     4681 ttcagaaagt cggctgagta catatttatt ttgctttttc cgaaatgatc ccacaaaaca
     4741 gaaagaagct attgcaattt ataccgcctt gcaacatcga acaggaattt atttttcatt
     4801 gattcaagaa atagaggtgg cactaagaaa tgaagtcagc cagttgttac gctttgctgc
     4861 acctaatcat aatttatacg aattctttca ttttctagcg aacgatagta atgctcctct
     4921 taatgcagaa tctaaacgcc agctacaaaa agccattagt gaatgcggac gtaactataa
     4981 tgaaaatgac ataatttctc atatttcttt tggattttgg gtaaatctgt ttaattatga
     5041 tataaagcgt aatcaatatg ttgcttactg gcaaagcgta ttaaagccta tttttggaca
     5101 tagatttagt aattttaagg atttatacaa tacattaaag caaattatgc gttttagaaa
     5161 tcggctgtat catcaagaag tggtttggaa taagcgaatt gccaagaaac caacgcacgc
     5221 actagagaat ttagaaaaaa cttacaagca atttgagtta gcactacaaa agatagcacc
     5281 tgaacgattt gcgtttcgtc agctttcaca agcacttatt tggcaacgcc aaatcttttt
     5341 cgaccaacaa atttttgaag ctgaaatcgt tattttgccc caacatatct aagcaaaaag
     5401 ctacgcatct atgtagcttt ttcttaatta aaaatgtttc cactctaacc cttgtgtatc
     5461 aaaggtaaat tgccctttgc cataattgta aaaactcgcc tctacaatta gttttttcga
     5521 ctttttcaac ttatctacaa aggttttcat tgcttttgca ttttcaatga aaagcgtatc
     5581 attgctgcca ccatccgccc caatcattcg ataactttcc aatttaccat catcaaactt
     5641 cacagtaatt ttacagctct caatcataca gccattaaat tgaccgtgta cgctaaaaat
     5701 tacatcattg ccatatttag ggtctttgcg taacattaaa ttcattgatg atgaattata
     5761 cgggaaacca aaatctattg tgttagttga tctaatttta gcaaagtaag tcgttgcatt
     5821 acgcaattca tctttctttt gttcatattc ccaattagac ttttcatcgg tagcttcatc
     5881 tttaccagta tcttttttca caaagacact atcataacat tctaagcgtt ttgcactatc
     5941 ttcaatctta gagcaacttt ctccagtttc gttagctaaa gcaaaagcgg gcaaacaaca
     6001 taaagtcatc agtagttttt tcatataacc tccatagaaa tcccttctta ttttctcaaa
     6061 agcgtggttt tcggtctgtg atcaagctcg caatctcaat aattatattt taatggttta
     6121 aaaaacaatc aattaagaaa tcataactaa ttgaaattta agaaatctta aaaatactta
     6181 ttaaataagc ttaaattttg attgacttgt aatttaagtt ttcttaaact taattcatca
     6241 aaacgagcta cggctcaatg ctctttaaca attcggtgct tgtgcggacg atattaacaa
     6301 cctcgggcag ttgtaaagta atgctttata actcagtaag gttggttaga ccctgacata
     6361 caaatttgaa cgacttgcca aaaagaggtg gcaaggttta ggcaacacac tcgcaaggtg
     6421 tggagagctg aaaaggcaac actggtatca gtcctaagca atcacgctta tctcaagttt
     6481 gagtaagtac ggatacaagc agcacccgac ggaatggcga aagccgggcg ggcgacggcg
     6541 tgggcagaca cgcatttatt ccaaagctca tttcaccaag tgtgtttcgg aatacccaca
     6601 actagacgca agtcgctcca tttgcccacc gtaaaacgtg ggcttttttt aaccctaaag
     6661 gacaatccta tgaacaaaat gaaacaactt gccccatttg ccttgctaat tttgctatta
     6721 ggcattgtcg ggcgaatgga ttatgacgac cacatacaaa tgcaacgtta caaatgcgaa
     6781 cgaaatcaag gcttttggca aatggaaagc aacggcaacc aatactgcgg agggaaatat
     6841 ggcacgaaaa attgatgccg gtgttgagat tgttgaggta gataaacgat ttatcgccaa
     6901 gtttttttat gacggcaaat tacagcacac aacctatcca caatacaacc gccaaaacgc
     6961 aattatgttg attaaccgca aaattgagcg gttcaacatt ggcagagaca aaccaatcaa
     7021 actttataag gaataacaat ggcaggaatt aacaaagtga ttattgtcgg tcgcctaggt
     7081 aacgacccgg aactacgaac aatgccaaat ggcgattcag tcgccaaaat cagtgtagca
     7141 acttcaaccg aatggacgga taaaacctca ggcgagaaaa aacaagccac agagtggcat
     7201 agcattatcg cctttcggaa tttagctgac attatcggca aatacctgaa aaaaggctcg
     7261 caagtgtatg tggaaggcaa gctacgcact cgcaaatggc aagcccaaga cggcacagac
     7321 cgctggacga ccgaaatcat cgccgatcag ctacaaatgc tcggtagctc aaacagcgga
     7381 aacagcaata ataattgggc aaccgaaccg gcaggaaacc caccaccaac caatccatat
     7441 aaccacgtaa tgacggattc agaatcacga gattttgatg atgatatccg ggttcgttgg
     7501 attaccaaag aacaagccaa gcagtttatt aataatatta gtactgattg gatgaaaact
     7561 atctgctctt ttgctttatt aacaggagca aggcgaacag aaatactttc tatgacttgg
     7621 gataaaatag attttatccg taaagtagcg attgtttcga atgatattgc caaatctgaa
     7681 aaagcgagat cgcttttact taatgatgat gcaattgaat tattacaaaa gcagagaggg
     7741 aaaaatccta aatatgtttt tgtaggaagc aaagggcagg cattacaaga tattaaccgc
     7801 aaaatattta acaaagcgac tgaaaaatgt ttattggttg atttccattt ccatgattta
     7861 aggcatactt gggccagttg gcacgttcag gccggcacac cattatttac cttaaaagaa
     7921 ttgggtggct gggaaacatt agagatggta aagaaatatg cccatcttaa tgcagaccat
     7981 ttactcaacc acgctaactc agttaaattc tagtcacaaa ttagtcacaa agtatttttg
     8041 acataggaaa ttaataactg atatttaaat gtaactattt gaaatataag ggtaattaat
     8101 ggcacgccct aaaggattcg aacctttgac ccacgcctta gaagggcgtt gctctatcca
     8161 gctgagctaa gggcgcagat gaagataata taaaaagaag tggtcggcga gataggattt
     8221 gaacctacga cccactggtc ccaaaccagt tgcgctacca agctgcgcta ctcgccgaca
     8281 taagatgttg ttgattatag atttctttgc acaacagtca atcttttttt gtgaatgtcg
     8341 gcttaaatga ttgaagttta tccgttattc aaaattagct tatcaaaaag gctatttttt
     8401 gagagaatga cgaatgtttt gccaagtgat atttcgggag gtagtaatga ctgcacaaat
     8461 tatttcgggg agtgaggttt cttcacaaat taaaaaaaag gtgagtgaga aaatcgctca
     8521 ttatcttgaa cagggtaaac gtaaccctgg tcttgcggtc attttagtgg ggaatgaccc
     8581 agcctctcaa gtgtatgtgg ggagtaaacg caaaagctgt gccgaaattg ggattgcgtc
     8641 gaaatcttat gatttacccg aagaaaccac agaggctgaa ttattagcac tgattgaaaa
     8701 gttgaatcaa gatgattcgg tcgatgggat tttagtccaa ttaccgttac ctaaacagat
     8761 cgattcgact aaagtgattg aagccatctt accacataaa gatgttgatg gattccaccc
     8821 ttataatgtt gggcgtttat ctcagcgtat tcccacttta cgcccttgca cgccatacgg
     8881 tgtgatgaag ttgcttgaaa caactggggt agatttatat ggtcaacacg cagtgattgt
     8941 aggtgcgtct aatattgttg gtcgcccgat ggcgttagaa ttgttgcttg gtggttgtac
     9001 agtcacagtt actcatcgct ttaccaaaga tttagagcat cacgttcgcc aagcagatat
     9061 tttagttgtg gcagtcggca agcctgaatt tattcccggg gagtgggtta aagacggtgc
     9121 tatcgtgatt gatgtaggga ttaaccgtgg agcagacggc aaactaaaag gtgatgtaga
     9181 gtattcagtt gcctcacaaa aagcggcatt tatcacccct gtccccggtg gggtaggccc
     9241 gatgacggtg gcaatgttaa tgcaaaatac cttgcagacg tatgaaaacc atttacaagc
     9301 ggtctaattt tacggatatt ttgcaaatcc tcggcattgg tcgaggattt ctttttctgg
     9361 gctttttcag cagaaaaggc taaaatactt gccat
//
LOCUS       DANLRW010000096         8983 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.097, whole genome shotgun sequence.
ACCESSION   DANLRW010000096 DANLRW010000000
VERSION     DANLRW010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8983
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.097"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(55..684)
                     /locus_tag="PXA71_001996"
     CDS             complement(55..684)
                     /locus_tag="PXA71_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HDL5106074.1"
                     /translation="MDIFIQGFIVCFGLIVSIGAQNAFLLKQGILKQHIFWIALLCFL
                     GDVFLMTIGVLGLGTLIAELPVVSFIISLLGAIFLLSYGSRSFISVFKSGEYLVASGE
                     NATSLKKALLITFAITFLNPHVYIDTVVIVGSIGGKLDFNGKIYFLAGALLCSFIWFF
                     GIGYGASLLSPYFAKRRTWQILDAVTGLIMYFIAFSLLIYTYQLALQIF"
     gene            788..1435
                     /gene="udk"
                     /locus_tag="PXA71_001997"
     CDS             788..1435
                     /gene="udk"
                     /locus_tag="PXA71_001997"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HDL5106075.1"
                     /translation="MTDTSQTSSCVVIAIAGASASGKSLIASTIYKELKNELGTDNIG
                     IISEDAYYRDQSHLTMEERIKTNYDHPNSMDHHLLVEHLRQLKQGNAIEIPEYDYTEH
                     NRKTTTKHFEPKKIIILEGILLLTDENIRNEINVSIFVDAPLDICFIRRLQRDMVERG
                     RSMESVISQYRKTVRPMFLQFIEPSKQYADIIVPKGGKNRIAIDILKAQIKQLLK"
     gene            1450..2031
                     /gene="dcd"
                     /locus_tag="PXA71_001998"
     CDS             1450..2031
                     /gene="dcd"
                     /locus_tag="PXA71_001998"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDL5106076.1"
                     /translation="MRLCDTDIKRYLDEGIIAITPRPSDDKISGATADVRLGNSFRVF
                     REHKTPYIDLSGPREEVAAQLNKVMSDEIIIGDDEAFFLHPGDLALATTLESVSLPAN
                     IVGWLDGRSSLARLGLMVHVTAHRIDPGWEGKIVLEFFNAGKLPLALRPNMAIGALSF
                     EILSGDAAKPYNARKDAKYKNQQSAISSRINQD"
     gene            2109..2264
                     /locus_tag="PXA71_001999"
     CDS             2109..2264
                     /locus_tag="PXA71_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009041538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HDL5106077.1"
                     /translation="MLHYAVVFFVIAIIAALLGFGGIAGSATEIAKILFFVFLILTVI
                     SFFFKKK"
     gene            complement(2393..2995)
                     /locus_tag="PXA71_002000"
     CDS             complement(2393..2995)
                     /locus_tag="PXA71_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HDL5106078.1"
                     /translation="METLIEFFSSYGYWAVFLVLLACGFGVPIPEDITLVSGGVISGL
                     GYTNVHWMLVVSMLGVLVGDSTMYWLGRIYGEKILKFPLIRNVATPERFATVQERFEK
                     QGWKLLFMARFLPGLRAVVYLVSGITRKVSFVKFLLVDFCAAIISVPIWVYLGDYGAS
                     NLDWLKEQVANGQHLIFAILGIVILFLGWKWYKNKKQYKK"
     gene            complement(2997..4016)
                     /gene="purR"
                     /locus_tag="PXA71_002001"
     CDS             complement(2997..4016)
                     /gene="purR"
                     /locus_tag="PXA71_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HDL5106079.1"
                     /translation="MATIKDVAKYAGVSTTTVSHVINKTRFVAEDTTKAVWEAIKALN
                     YSPSAVARSLKINTTKSIGMIITTSESPFFAEIVLAVEEFCYSKGYSLFLCNTQNKLE
                     KIQNHLDMLIKKRVDGILVMCSEYTANSFDIFENSNIPMVIMDWGRSDERSDIILDHG
                     VEGGYIATQHLIENGHQDIAVITGNRDKEIARTRFEGFKKALSEAGLSIREEWIQEGD
                     FEPEGGYECMNNLLKSSEKLPTAVFCFNDSMALGAISAITEKGLNVPQDISVIGYDNV
                     HSSRFYAPPLTTIHQSKSRLGSAALELLLERIEDNENAKEPKVLEFFPELVKRKSVRN
                     LNIKE"
     gene            complement(4152..4880)
                     /gene="cmoA"
                     /locus_tag="PXA71_002002"
     CDS             complement(4152..4880)
                     /gene="cmoA"
                     /locus_tag="PXA71_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HDL5106080.1"
                     /translation="MQRDTLFSAPIEKLGDFTFDESVAEVFPDMIQRSVPGYSNIITA
                     IGMLAERFVTDNSNVYDLGCSRGAGILSIRRNVNAKNVQIIGVDNSQPMVERCKTHLS
                     AYHSEIPVTILLDDIRHIEIKNASMVVLNFTLQFLPREDRLALLQKIYQGLNSNGILV
                     LSEKFTFESEEMNELLIDLHHTFKRANGYSELEVSQKRNALENVMRTDSIETHKKRLQ
                     EAGFTQVELWFQCFNFGSMIAIKA"
     gene            complement(4890..5672)
                     /locus_tag="PXA71_002003"
     CDS             complement(4890..5672)
                     /locus_tag="PXA71_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL5106081.1"
                     /translation="MTEKSQLNFNYQPSNNHANAQTMIFLHGLFGDLNNLGAIAKPFA
                     ERYSILMVDLRNHGRSFHSDEMNYALIAQDLAQLLTELNIQNAIVVGHSMGGKSAMAL
                     AAFAPELVEKLVVIDIAPVTYTQNRHQQVMAALFAVKEAKPQNRQQAKAIMAEYIRDE
                     GVQQFMLKSFDAQSEQSFRFNLQALKDNYQNVMGWQQVFVDKPTLFIKGALSDYIQAE
                     HTQTILAQFPQAKSFIVANADHWVHAEKTGTVVRAINKFLEK"
     gene            5791..6357
                     /gene="seqA"
                     /locus_tag="PXA71_002004"
     CDS             5791..6357
                     /gene="seqA"
                     /locus_tag="PXA71_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HDL5106082.1"
                     /translation="MKRIEIDDELYQYIASRTQSIGETASDILRRLLRLPQSPQPFVL
                     VQEHMINELKELVKTPSRATKKNESNAEKTVEKLENILNSEHFMNENKNVVRFTMLLA
                     ALYRANPEAFAKATEKVRGNERIYFSQSEAEILATGSGVKAKQIPDSPFWVITNNNTA
                     RKGLILKGVMESMKVPSQLIERIQALFI"
     gene            6367..7785
                     /gene="menE"
                     /locus_tag="PXA71_002005"
     CDS             6367..7785
                     /gene="menE"
                     /locus_tag="PXA71_002005"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HDL5106083.1"
                     /translation="MLINSTRFPTQFWAAHSAQNVAIIWEKGTSDYLNHLPSNITWYS
                     LNQLIAQAIFVLQQQGATPHSLIAYCGSHRLIGLLTYCASLALGAKILMLNPAQTASQ
                     RQAVLDDNGVELIINDADFAKFSAKTTACNAFPTIDFEKPATLTLTSGSSGKPKAVVH
                     SIAAHLYSAEGVCELMAFEQPNSWLLSLPLFHVSGQGIIWRWLFKGATLYVHEDKSDF
                     FLSAQKVSHLSLVPTQLQRYLNQLDSMVSQKCLLGGSMLPAELIAQAQQSGMTTFSGY
                     GMTEMASTICAVENDLNSVGFPLKHRELKLENGEIWVKGKSLGLGYWQKNGQIRPLVN
                     TQGWFATKDRGEWNHKKQLVIKGRLDNMFISGGENIQPEEIEQLIFRSQLVEQIIVLP
                     IEDKQFGHRPVAFLQFKQSDSKNELHKLKIWLSDKLERFKQPVAYYLLDIEKYQKQGL
                     IKLSRTQLQQDLKLKVLKEIYV"
     gene            7778..>8983
                     /locus_tag="PXA71_002006"
     CDS             7778..>8983
                     /locus_tag="PXA71_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HDL5106084.1"
                     /translation="MFRPILKTFVLSLGLMLNSYALAELPTQQVVQTQLDSAKKLDQA
                     DADNKALVQTLEDTLAFLAQIDKQKADNQALNKSIQDSQKALKTSQHNLEKLKEVTIA
                     SVDNLTQKATTDLQKELTSTQSQLETVQHDLSIINNNLVAQNTAPDKAQTALTEMVKR
                     KQEISSQLSATNIKNELQTKLEVELELIELKNTYNQILLGGSEDLSALYSAQLDEKKQ
                     EQQNLQAEIANLQTAINNKIVEESQNKLDQAQAVQNQQNNATTNPVILRELDINTKVT
                     QELLKQTKDMTQLSQDNLRIKSVLDNLQQTQRNIEEQISSLQGTLVLSRIINKQKQSL
                     PQDEMISGLSKQIADLRVRVFDITEFKDSFADINAYISRIEQDEKTTFTSKEKEQLSK
                     ILQERSDTLT"
BASE COUNT         3004 a         1794 c         1542 g         2643 t
ORIGIN      
        1 ctactaatat agcaaaaaag cccgtcattc atcaatgaaa aaatttaaac tccactagaa
       61 aatttgcaga gcaagttgat aagtataaat cagtaaacta aaagcgataa agtacataat
      121 tagcccggta acagcatcta aaatttgcca agttcttcgc tttgcaaaat aaggggaaag
      181 taagcttgct ccataaccta tgccaaaaaa ccaaataaat gagcaaagta atgcacctgc
      241 taaaaagtat attttaccgt taaaatctaa tttcccaccg atactgccta caatcacaac
      301 cgtatcaata taaacgtgag gatttaagaa tgtaatcgca aaggtaatca gtaaagcctt
      361 ttttaagctc gttgcattct ctccacttgc cacaaggtat tcaccacttt taaatacgct
      421 gataaatgaa cggctaccgt agcttaatag aaaaatggcc cctaaaagcg aaataatgaa
      481 acttacaaca ggcaattccg caattaacgt gcctaagcct agcacaccta tcgtcattaa
      541 aaatacatca cctaaaaaac agagcaatgc aatccaaaat atgtgttgtt ttaaaatccc
      601 ttgctttaat aaaaaggcat tttgtgcgcc aatagagaca attaagccaa aacacactat
      661 aaatccttga atgaaaatat ccattttttc tccaaaatcg cataacaagc ggtcaattat
      721 acaaaaaatt ttgcaaaact tcggtataat ttatcgaata ctcttttgac tgaataggaa
      781 attttttatg actgatacta gccagacttc atcttgcgtt gtcattgcga ttgccggcgc
      841 atctgcctca ggtaagagcc tgattgcctc aaccatctat aaagaactca aaaatgaatt
      901 gggaacagat aatatcggta ttatttccga agatgcttat tatagagatc aatctcatct
      961 aacaatggaa gaacggatta aaaccaatta cgatcaccct aattcaatgg atcatcattt
     1021 attggttgaa catttacgcc aattaaaaca aggtaatgcg attgaaattc cagaatatga
     1081 ctataccgaa cataatcgta aaacgaccac gaagcacttt gaaccaaaga aaatcattat
     1141 tttagaaggt attttattgc tgacagatga gaatattcgc aatgaaatta atgtttctat
     1201 tttcgtagat gctcctctgg acatctgctt tatccgccgc ttacaacgtg atatggtgga
     1261 acgtggacgt tcgatggaat cagtgattag tcaatatcgc aaaaccgttc gcccaatgtt
     1321 cttacaattt atcgaaccct ctaaacaata tgctgatatt attgtgccaa aaggtggcaa
     1381 aaaccgtatt gccattgata ttcttaaagc acaaattaag caattactaa aataaaatag
     1441 gagctaaata tgcgtttatg tgatacagat attaaacgtt acttagatga aggtattatt
     1501 gccataacgc ctcgaccttc agacgataaa atttctggcg ccactgcaga tgtgcgttta
     1561 ggtaattcgt ttcgtgtatt tcgtgaacat aaaacgccct atattgattt aagtggccct
     1621 agagaagaag ttgccgctca gttaaataaa gtgatgagtg atgaaattat catcggtgat
     1681 gatgaagcat ttttccttca tcccggtgac cttgcactcg caacaaccct tgaatcggtt
     1741 tccttaccag ccaatatcgt tggatggtta gatggtcgtt cgtcacttgc tagattaggc
     1801 ttaatggtac acgttaccgc ccacagaatc gatccgggtt gggaaggcaa aattgtattg
     1861 gaatttttta atgctggaaa attaccccta gctttacgcc ctaatatggc aattggcgca
     1921 ttaagctttg agattttaag tggtgatgct gcaaaaccct ataatgcgcg aaaagatgca
     1981 aaatataaga accagcaaag tgccatttca agtcggatta atcaagatta atatagtaca
     2041 tgccttgcaa tcatacatta actatgttag ttttttaatc agtttattac acagtaagga
     2101 gtataactat gttacattat gcagtcgtat tttttgtcat cgctataatc gcagcgctat
     2161 taggatttgg tggtattgct ggaagtgcta ctgaaattgc caaaattctc ttttttgtct
     2221 ttttaatact tactgttatt tcgttcttct tcaagaaaaa gtgacacagt taaacctaat
     2281 tttttaagtt aaaatatagt tcaaaaaaac agttggtaat ggatatttat aattattctt
     2341 accaactgtt ttgctattat atctttttaa gatgaaatgc tcgtcttttg tttcactttt
     2401 tatactgctt tttattttta taccatttcc agcctaaaaa tagaataaca atgcctaaaa
     2461 tggcaaaaat gaggtgctgc ccattagcta cttgttcttt tagccaatcc aaattagatg
     2521 ccccatagtc gcctaaataa acccaaattg gcacagagat aatagcggca cagaaatcaa
     2581 ctaataaaaa ttttacgaag ctgacttttc tggtaatacc tgaaactaag taaaccaccg
     2641 cgcgcaagcc aggtaaaaaa cgagccataa aaagtagttt ccatccttgt ttttcaaaac
     2701 gttcttgcac ggttgcaaaa cgttcaggtg tcgcaacatt cctgattaat ggaaatttga
     2761 gaattttttc gccatagatt ctacctagcc agtacattgt gctatcgcca actaatactc
     2821 ctaacatact aacaaccagc atccaatgca cattggtgta gcctaatcct gaaataacac
     2881 caccggatac taacgtaata tcttcaggaa tcggcacacc gaaaccacag gcaagtagca
     2941 caagaaaaac agcccaataa ccatagctac taaaaaattc aatcaatgtt tccatattac
     3001 tccttaatgt ttaaattccg aaccgattta cgtttgacca attcaggaaa gaactctaat
     3061 actttaggct cttttgcgtt ttcgttatct tcaatacgtt ctaataataa ttctaatgct
     3121 gccgagccta agcgagattt tgactgatgg attgtcgtaa gaggcggtgc ataaaagcgt
     3181 gagctatgca cgttatcata cccgatcact gaaatatctt gcggcacatt cagccctttt
     3241 tcggtaatag ctgaaattgc ccctagtgcc attgagtcat taaaacaaaa aaccgcggtt
     3301 ggtaattttt cactgctctt aagcaaatta ttcatacact catacccccc ctcaggttca
     3361 aaatcgcctt cttgaatcca ttcttcacga atagacaaac ccgcctcaga tagcgctttt
     3421 ttaaaacctt caaaacgggt tcttgcaatt tctttatctc tattgccggt aattacagca
     3481 atatcttgat gcccgttttc aattaaatgc tgagtcgcaa tatagccacc ttcaacaccg
     3541 tgatctaaaa taatatcact gcgttcatca cttcgtcccc aatccataat caccattggg
     3601 atattgctgt tttcaaagat atcaaatgaa ttagctgtat attcggagca catcaccaaa
     3661 atgccatcaa cccgtttttt gatgagcata tctaaatgat tttgaatttt ctcaagtttg
     3721 ttttgagtat tgcacaaaaa tagtgaatac cctttgctat agcaaaattc ctctaccgct
     3781 aacacaattt cagcgaaaaa cggtgattcg ctggttgtaa tgatcatacc gatagattta
     3841 gtcgtattaa ttttcaaact ccgcgctaca gcactaggag aatagttcag cgctttaata
     3901 gcctcccaaa ctgcttttgt agtgtcctct gctacaaagc gggttttgtt tataacgtga
     3961 gaaaccgttg tagtcgatac accagcatat tttgcgacat cttttatcgt tgccatacct
     4021 ttttcctcct aaataagtag tggtgcatta taactgattc taactgactt ttattataaa
     4081 gaaatagata gaatgcaagc ggttgctttt tatcaagaat ttgcaaaaaa ttttacaaat
     4141 atcaccgctt gttaggcttt aattgcaatc attgagccaa aattaaagca ttgaaaccaa
     4201 agttcaactt gtgtaaaacc agcttcttgc agacgttttt tatgggtttc aatactatct
     4261 gttcgcatca cattttccaa agcattacgc ttttggctga cttccaattc actgtagcca
     4321 tttgctcgtt tgaatgtgtg atgaaggtcg atcaatagct cgttcatttc ctcactctca
     4381 aaggtaaatt tttccgataa cactaaaatg ccattggaat ttaatccttg ataaatcttc
     4441 tgtaataatg ctaggcgatc ttctcttggt aaaaattgca aggtgaaatt aagtaccacc
     4501 attgaagcat ttttaatttc aatgtggcga atatcatcaa gtaaaatcgt caccgggatc
     4561 tcagagtgat aagcacttaa atgggtttta caacgctcaa ccatcggctg agaattatct
     4621 accccgataa tctgcacatt cttcgcattc acattacggc gaatagataa aatccctgcg
     4681 cctcgtgaac aacctaaatc ataaacattt gaattatctg tgacaaaacg ctccgccaac
     4741 attccaatag cagtaataat attggaatag cccggcacgg agcgttggat catatccgga
     4801 aacacttcag caaccgattc atcaaaagta aaatcgccca atttctcaat cggagcggaa
     4861 aataatgtat ctctttgcat ttttctccct tatttttcta aaaatttatt gattgctctc
     4921 acaacagttc ctgttttttc tgcgtgaacc caatgatcag cgtttgccac aatgaaagat
     4981 ttggcctgcg gaaattgtgc caaaatcgtt tgtgtatgct ctgcttgaat ataatccgat
     5041 aatgcacctt taataaacaa ggtcggttta tccacaaata cctgctgcca ccccatcaca
     5101 ttctgataat tatcttttag cgcctgtaaa ttaaaacgga aagattgctc gctttgggca
     5161 tcaaaagatt tcaacataaa ctgttgcacg ccttcatctc gaatatattc agccattatc
     5221 gctttagctt gctgacgatt ctggggttta gcttctttca ccgcaaataa ggctgccata
     5281 acctgctgat gccgattttg ggtataagtg accggggcaa tatcaatcac taccaatttc
     5341 tccaccagtt caggagcaaa tgcagccaat gccatcgcac tttttccgcc cattgaatgc
     5401 ccaaccacaa tagcattttg gatatttaat tctgtgagta attgtgctaa atcttgtgca
     5461 atcaaagcat aattcatttc gtctgaatga aaagatcgcc cgtgatttct gagatcaacc
     5521 attaaaatgg agtaacgttc tgcgaatggt tttgctattg cgcctaggtt atttaaatct
     5581 ccaaacaatc catgtaagaa gatcatcgtc tgagcattag catgattatt cgaaggttgg
     5641 taattaaagt ttaactgcga tttttctgtc atataaatgt cattgttcat ataaattttc
     5701 agcgatgttc ctctataaaa aacaatagaa atgcgtataa tagcaagcac tattaacgca
     5761 tttaataccc gcagatattt gaggatcccg atgaaacgaa tcgaaattga tgatgaatta
     5821 tatcagtata ttgcaagccg tacacaatct attggtgaaa ctgcgtcaga tatattacgc
     5881 cgtctattac gcctgccaca atcgcctcag ccttttgttt tagtacaaga acacatgatc
     5941 aacgagctta aagagcttgt caaaacgcct tctcgtgcta cgaaaaaaaa tgaatccaat
     6001 gcagaaaaaa ccgttgaaaa attggaaaac attttaaatt ccgagcattt tatgaacgaa
     6061 aataaaaatg tagtgcgttt tactatgcta ttagccgcat tatatcgagc aaatccggag
     6121 gcttttgcta aagcaaccga aaaagtgcgt ggtaatgaac gtatctactt ttcgcaaagt
     6181 gaagccgaaa ttttagctac tgggagtgga gtaaaagcca agcagatccc agattcaccg
     6241 ttttgggtaa ttaccaataa taataccgca cgcaagggac ttattctcaa aggcgtaatg
     6301 gaatccatga aagtaccaag ccagttaatc gaacgcattc aagcgctttt tatctaatta
     6361 attgaaatgc tcatcaattc tactcgcttt cctacccaat tttgggctgc tcattcagcc
     6421 caaaatgtgg cgattatttg ggaaaaagga acatcagact atcttaacca ccttccatca
     6481 aacatcactt ggtatagttt gaatcagttg attgcgcaag ctattttcgt gttgcaacaa
     6541 caaggtgcta ctccgcacag tttgattgcc tattgtggtt ctcatcggct cattggcttg
     6601 ctcacttatt gtgctagcct tgctttgggg gctaagattc taatgcttaa ccctgctcaa
     6661 acagcaagtc aacgacaagc agtcttagat gacaatggtg ttgagctcat tattaatgat
     6721 gccgactttg caaaattttc agcaaaaacg accgcttgta atgccttccc tacgattgat
     6781 tttgaaaaac cagctaccct aaccctaacc tcaggctcaa gcggtaaacc taaagcagtg
     6841 gtgcattcta tagcggccca tctctatagt gccgaaggag tatgtgaatt aatggcattt
     6901 gagcagccaa actcttggct actgagcttg cctctgtttc acgtttccgg acaaggcatt
     6961 atttggcgtt ggttatttaa aggtgcaaca ctgtatgttc acgaagacaa aagtgatttt
     7021 tttctttcag cacaaaaagt gagccatctc tctttagtcc ccacccaatt acaacgctat
     7081 ttaaaccaat tagattctat ggtcagccaa aaatgtttac tgggtggatc tatgcttcca
     7141 gccgaattga ttgctcaagc acaacaatct gggatgacta ccttttcagg ctacggaatg
     7201 actgagatgg catcaaccat ttgtgcagta gaaaatgatt taaacagtgt tggttttccg
     7261 ttaaaacatc gggaactaaa attagaaaat ggtgaaattt gggtaaaagg caaatcactc
     7321 ggcttaggct attggcaaaa aaatgggcaa attcgaccgc ttgtaaacac acaaggctgg
     7381 tttgccacta aagatcgtgg cgaatggaat cacaaaaaac agcttgtaat aaaaggacga
     7441 ttggataata tgtttatttc aggaggggaa aatatccaac ctgaggaaat tgaacaactg
     7501 atttttcgtt ctcagcttgt cgaacagatt atcgtgttgc cgattgaaga taagcaattt
     7561 ggacatcgac cagtggcgtt cttacaattc aagcaatctg attcaaaaaa tgaactccat
     7621 aaattaaaaa tttggctgtc tgataaatta gaaagattca aacagcctgt tgcctattat
     7681 ttactggata tagaaaaata ccaaaaacaa ggcttaatta aactatcaag aacacaatta
     7741 caacaagatt taaaactcaa agtattaaag gaaatctatg tttagaccga ttttaaaaac
     7801 atttgtgctt agtttaggct taatgctaaa tagttatgca ttagctgaat tgccaaccca
     7861 acaggtagtg caaacgcagt tagatagcgc caaaaaatta gatcaagccg atgcggataa
     7921 taaggcattg gttcaaacac ttgaagatac gcttgctttc ttagcccaaa ttgataaaca
     7981 aaaagcagat aatcaggcat tgaataaatc tattcaagat tcccaaaaag cattaaaaac
     8041 aagccaacat aatcttgaaa aattaaaaga ggtgactatt gcaagtgtcg ataatttaac
     8101 acaaaaagcg acaacagatt tacaaaaaga gttaacctct acacaatctc agctggaaac
     8161 agtacaacac gatttaagta ttattaataa taatttagtt gcacaaaata ccgcaccgga
     8221 taaggctcaa acggccttaa ccgagatggt taaacgtaaa caggaaatta gtagccaact
     8281 ttcagcgact aacattaaaa atgaactaca gacaaagtta gaagtagaat tagaattaat
     8341 agaattaaaa aacacttaca atcaaatatt acttggtggc agcgaggatt tatctgcgct
     8401 ttactctgct caattagatg aaaaaaagca agagcagcaa aatctacaag cagaaattgc
     8461 aaacctgcag actgctatca acaataaaat tgtagaagag tctcagaaca agctagatca
     8521 agcacaagcg gttcaaaatc agcaaaataa tgcaacgacg aacccagtta tcttgcgtga
     8581 attggatata aataccaaag tcacacaaga gttgctaaaa cagaccaaag atatgacgca
     8641 gttatcacaa gataatttgc gaatcaaaag tgtgctagat aacttacagc aaacccaacg
     8701 taatattgaa gaacaaatca gttctctgca aggtacgttg gtgctttctc gtattattaa
     8761 taagcaaaaa caatcattac cacaagatga aatgatttcc ggactatcaa aacaaattgc
     8821 agatttacgt gtacgtgttt ttgatatcac tgaatttaaa gactcttttg cggacataaa
     8881 tgcttatatc agccgcatag agcaagatga aaaaacaacc tttacgagta aagagaaaga
     8941 acaactgagt aaaattttac aggaacgttc tgacacttta act
//
LOCUS       DANLRW010000097         8966 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.098, whole genome shotgun sequence.
ACCESSION   DANLRW010000097 DANLRW010000000
VERSION     DANLRW010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8966
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.098"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            16..3174
                     /locus_tag="PXA71_002007"
     CDS             16..3174
                     /locus_tag="PXA71_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HDL5106085.1"
                     /translation="MITINENTIEQSAIATLQSLGWDYTYGKKILAGLEHEWRERTAE
                     VILKPLLAQAIAKFNPNLPACEVENVVAQVCRADSGDLAERNRQAYDWLRNGVKITYQ
                     LYGEQVSDVVQLIDFQRPENNDFRIVNQLDISGKKGKRIPDLIGFVNGLPLVVFELKN
                     PLKENADIGKAFAQLQTYKDEISDLFVFNQALVISDGIVARIGSLTADFDRFTPWRVV
                     DEKNQSKRIVFEDELTALLQGVMTPKNLLDYVQNFVVFERDGKNRLIKKIGAYHQFYG
                     VNEAVDCTLLAATGNRKIGVFWHTQGSGKSLSMLFYAGKVLSQSSLKNPTLVLVTDRN
                     DLDGQLYATFCGGEALLKQTPIQADGRDELRSALASRSAGGVIFTTIQKFGLMEGELA
                     HPVLNERENIIVITDEAHRSQYGFSQKINHKGEYREGYAKHLRSALPNASFIGFTGTP
                     IELDDKDTQEVFGKYVSIYDFEDAVEDGATVPIIYEPRQISLGESGEFSKVMEEAQQL
                     IDDDENSYNFRLREKLHSVDSRLQKMAEDIIAHYDERTKQQDGKAMVVVMSRAICVKL
                     YEKITALRPEWHSNDVLQGSIKIVMTSNASDPAEWQKHNQDKKTLEKRFKDPDDPLNI
                     VIVRDMWLTGFDAPCCNTMYIDKPMSGHNLMQAIARVNRVFRNKSRENGGLIVDYVGL
                     TDELEKAMKQYTNAGGKEKPVRDISAVLEKMVEHITVIRGQFATPIDGQAVDIAKMLQ
                     ISEPPKLLNAILTSANHILALDRIQPPDNTAKDKTPRKNAFLQSVRLAKKGYALCGAL
                     KAVEPYKQELAFYDAVRATIIKNSTAPRNSSSENDRLLQLTALMNRAVQSDGVVDLFD
                     LLKKDRPNINLLSDEFLETVKNSPTKDLWLSAMERYLASQLREQSGANLATKKAFEQK
                     LKEAMNQYHNHNLSVLEILEELIALAKEFEARQKRGEALGLSPAEMAFYDALARNESA
                     VREMGDEVLMKLAKDITDKLRKSVTVDWQYKDSVRAKMRTLIRIALRTYKYPPDLQAE
                     AIEFVLQQAEEIAGEFAITETA"
     gene            complement(3208..6099)
                     /gene="glnE"
                     /locus_tag="PXA71_002008"
     CDS             complement(3208..6099)
                     /gene="glnE"
                     /locus_tag="PXA71_002008"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HDL5106086.1"
                     /translation="MLTTLIPLSQLNLPPNLQNSEQIQPLVTAISLSNFVHQTLQKQP
                     DLLAEWLAKFPTPDDCCNYTERLAKILARVENEEMLGRVLRQFRHRELARLSFIQSNK
                     LATVELVFQHLSDLAESLILAARDWLFQRCCAEYGTPKNTLGETQELLILGMGKLGGR
                     ELNFSSDIDLIFTYPDIGETEGGRKSIENSKFFTRMGQRLIKVLDEITADGFVYRTDM
                     RLRPFGDSGALVLSFTAMEDYYQEQGRDWERYAMIKAKILGEDSQNLNHRYLKQMLRP
                     FVYRRYLDFSAIQSLREMKEKISREVVRRNLTDNIKFGAGGIREVEFIAQTFQMIRGG
                     RDKILQERSLLKVLPRLAELNLLTQTQVETLHNAYIFYRQIENVLQAIDDKQTQTLPT
                     DEASQARLVFACQSYYQQDLYSEKTHWVEHSFNDWQQFMAVLSQYQQAVRQIFNEIIG
                     EEETQANCNPVNEKLAEWKDILHYNIRLEDLSAVLKGYPKVAENDYTEIFRHFSTTFQ
                     DWVKRPIGVRGREVLRNLMPRIADSIFKGEDHLLLLPRVLNIVDKITTRTTYLELMLE
                     KEQILPQLLALCSKSVMIAEQIARYPMLLDELMSHRGLTDVQAFEKYQSALQDYLIRI
                     PEEDEEALIDGLRQFKQTQILRIAAADILGVLLVMKISDHLTYLAEAIINAVVNMAWK
                     QVSQRFGVPEHLEADEKGFAVIGYGKLGGIELGYNSDLDLVFLHNAPEDSQTVGGKKE
                     ISSHQFYLKLAQKINSIFNLNTSAGVLYEVDMRLRPSGEAGLLVSTFNAYEHYQKNEA
                     WTWESQALVRTRCVFGAENLKQAFEKIRQSTLAQPRASGQLRQEICEMRQKMYQHLSS
                     HSAEQFHIKQDQGGITDIEFIAQYLVLAHSHQHPKMAVWSDNVRIFDSAVECGILSSE
                     QSEQLQHCYTALRNKIHHLNLLRKDSVVDASEFTTERAFVREMWQRLLA"
     gene            complement(6271..6552)
                     /locus_tag="PXA71_002009"
     CDS             complement(6271..6552)
                     /locus_tag="PXA71_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006717394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HDL5106087.1"
                     /translation="MYYVIFAQDNPNMLEKRLEVRPAHLARLEKLQAEGRLLIAGPNP
                     TEDGSSVTGSTVIAEFNSLEEAQQWASQDPYVEAGVYSDVIIKPFKRVF"
     gene            complement(6554..7018)
                     /gene="yciA"
                     /locus_tag="PXA71_002010"
     CDS             complement(6554..7018)
                     /gene="yciA"
                     /locus_tag="PXA71_002010"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HDL5106088.1"
                     /translation="MKDKPYGKAPEGKLILRTLAMPSDTNANGDIFGGWIMSQMDLGG
                     AILAKELAKGRVVTVTVDKMIFHRPISVGDVVCCYGKLMHIGRSSMQVKVEVFIKQVY
                     EGNRERYLVTEALFTYVAIDKEGKPRAVPRENNPELDEALSLIDLTPEKQGE"
     gene            complement(7008..7565)
                     /locus_tag="PXA71_002011"
     CDS             complement(7008..7565)
                     /locus_tag="PXA71_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HDL5106089.1"
                     /translation="MKQLLEFIPLILFFVVYKMSGIQMASIALVIATIVQMIALKMLY
                     GKIEKQQIIMGGSVVFFGLLSAYFNEVKYLQWKVTIVYALFALVLLVSQFVFKTPLIK
                     KLLGKEIQLPEAVWNKINFGWAVFFLICMLLNIYISQYLSEEIWVDFKSFGIIGLTLV
                     ATVITGFVLYPYLKDAEKQEQKNER"
     gene            complement(7574..8383)
                     /locus_tag="PXA71_002012"
     CDS             complement(7574..8383)
                     /locus_tag="PXA71_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5106090.1"
                     /translation="MAQALLYFTTKYLQSIEGYFMSIKFVDLLQQSWNFMRNQQAFSL
                     FAIVTIVVVQLVFILVSPNSPELMAESQPQQLQIDASKMVSILLPTILLGVVNLLINV
                     LMIFNIQSINDGNYRQFFQNAGNALKHFLPVLLLQFVMVLPLSLGASFAMASPETVII
                     ALPVLVVGFYFFIKLSLVIYAYLLEKPQKSLSESIKFTLQLSRGKMLPLILFCVISYL
                     LPGMLSRLFTVFGNDFIGIFITIVLSAVINVFMAIFSFRFYQVYRQMPAVR"
     gene            8454..8891
                     /locus_tag="PXA71_002013"
     CDS             8454..8891
                     /locus_tag="PXA71_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HDL5106091.1"
                     /translation="MLSLFDAGQRYLNTLPNQKKLANFMPDYHIIRLVKFSSKVMPAF
                     ACFALVWQYCFTDPTQSILANSVLTAVFAISIPFQGLYWLGKRARSPLSLSLLEWYES
                     LRQKLISAQVKLEETQAVPSFQDFANLLKLAEETWGDEYFDEL"
BASE COUNT         2651 a         1927 c         1903 g         2485 t
ORIGIN      
        1 ggagatggag ttgtgatgat taccatcaac gaaaacacca ttgaacaatc cgccattgca
       61 actttgcaaa gcttgggctg ggactacacc tacggcaaaa aaattttggc aggtttagaa
      121 cacgaatggc gggagcgaac cgctgaggtg attttaaagc cgcttttggc gcaagcgatt
      181 gcaaaattca acccgaattt gcccgcttgt gaggtggaaa atgtggtggc acaggtgtgc
      241 cgtgccgaca gtggcgattt ggcggagcgt aatcgtcagg cttatgattg gctaagaaat
      301 ggggtcaaaa tcacttatca gttgtacggt gagcaggtgt ctgatgtggt gcagctgatt
      361 gattttcagc gtccagaaaa taacgatttt cgcattgtca atcagctgga tattagcggc
      421 aaaaaaggca aacgcattcc ggatttgatt ggctttgtta atggcttgcc gctggtggtg
      481 tttgagctga aaaatccgct caaagaaaat gccgacattg gcaaggcgtt tgcccaactg
      541 caaacctata aagatgaaat ttctgatttg tttgtgttta atcaggcact cgtgatttca
      601 gacggcattg tcgcccgcat cggttcgctg accgctgatt tcgaccgttt taccccttgg
      661 cgtgtggttg atgaaaaaaa tcagagcaaa cgcattgtgt ttgaagatga actcaccgcc
      721 ctgctgcaag gcgtgatgac acccaaaaat ctcttggatt atgtgcagaa ttttgtggtg
      781 tttgaacggg acggcaaaaa ccgcttaatt aagaaaatcg gagcatatca tcagttttat
      841 ggcgtgaatg aagcggtgga ttgcaccttg cttgccgcca caggcaaccg caaaatcggc
      901 gtgttttggc atacgcaagg ttcgggcaaa tcgctttcga tgctgtttta tgcaggtaaa
      961 gtattaagcc aaagcagcct gaaaaatcca actttggtgt tggtaaccga ccgcaacgat
     1021 ttggacggtc agctttacgc cactttttgc ggtggcgagg cactgctcaa acaaacgcca
     1081 atccaagccg atgggcgaga cgaactccgc tctgcccttg ccagtcgttc ggcaggcggt
     1141 gtgattttta ccaccattca aaaattcggc ttaatggagg gtgagcttgc ccaccctgta
     1201 ttaaacgagc gggaaaacat cattgtgatt accgatgaag cacaccgctc acaatatggt
     1261 tttagccaaa aaatcaacca caaaggcgag tatcgtgagg gttatgccaa gcatttacgc
     1321 agtgcattgc cgaatgcctc ttttattggc tttactggca caccgattga acttgatgac
     1381 aaagacaccc aagaagtctt cggtaaatat gtctcgattt atgattttga agatgcggtg
     1441 gaagatgggg caaccgtgcc gattatttat gagccacgcc aaatcagctt aggcgaaagt
     1501 ggcgagtttt ccaaagtgat ggaagaggca caacaactga ttgatgacga tgaaaacagc
     1561 tataacttcc gcctgcgtga aaaactgcac agcgtggata gccgtttgca aaaaatggcg
     1621 gaagatatta ttgcccatta cgatgagcgt accaaacagc aagacggcaa ggcgatggtt
     1681 gtggtgatga gccgtgccat ttgcgtgaaa ttgtacgaaa aaatcaccgc acttcgtcca
     1741 gaatggcact caaacgatgt gcttcaaggc agcattaaaa ttgtgatgac aagtaatgcc
     1801 agcgaccctg ccgagtggca aaaacacaat caggataaga aaaccttaga aaaacgcttt
     1861 aaagacccag acgatccgct caacatcgtg attgtgcggg atatgtggct gacaggcttt
     1921 gatgcgccct gctgtaacac aatgtacatt gataaaccaa tgagcggaca caacctgatg
     1981 caggcaatcg ctcgggtaaa tcgggtattt cgcaacaaaa gccgtgaaaa tggcggcttg
     2041 attgtggatt atgtgggctt gaccgatgag ctggaaaaag cgatgaagca gtacaccaac
     2101 gcaggcggta aagaaaagcc ggtgcgggac atttcagcgg tgctggaaaa aatggtggaa
     2161 catatcacgg tcattcgtgg gcaatttgcc acaccgattg acggacaagc ggttgatatt
     2221 gccaaaatgt tgcaaatcag cgaaccgcct aaactgctca atgcgatttt gacatcagcc
     2281 aaccatattc ttgccctaga ccgcattcag ccacctgata acactgccaa agacaaaacc
     2341 ccacgcaaaa acgccttttt gcaatcggta cgcttggcga aaaaaggtta tgctttgtgt
     2401 ggggcattaa aagcagttga accctataaa caggaactgg cgttttatga tgcagtgcgt
     2461 gccaccatta tcaaaaacag caccgctcct cgcaattctt cgagcgaaaa tgaccgcttg
     2521 ttgcagctta ccgccttgat gaatcgtgcg gtacagtcgg atggtgtggt ggatttattt
     2581 gatttgctga aaaaagaccg cccaaacatc aacctgcttt ctgatgagtt tttggaaaca
     2641 gtaaaaaaca gcccaaccaa agatttgtgg ctatcagcaa tggagcgtta tcttgcctca
     2701 caactgcgag agcaaagcgg tgccaatctt gccacaaaaa aagcatttga acagaaactc
     2761 aaagaggcga tgaaccaata ccacaaccac aatttaagcg tattggaaat tttagaagag
     2821 ctgatcgccc tcgccaaaga gtttgaagcc cgccaaaaac gaggggaagc gttgggacta
     2881 agccctgcgg aaatggcgtt ttatgatgct ttggcacgta atgaaagtgc ggtgcgggaa
     2941 atgggcgatg aggtattgat gaaacttgcc aaagacatta ccgataaatt acgcaaatcg
     3001 gtcaccgtag attggcaata taaagactcg gttcgtgcca aaatgcgaac cttaatccgc
     3061 attgctctgc gtacctataa atacccgccc gatttacagg cggaagcgat tgagtttgtg
     3121 ttgcaacaag cggaagagat cgccggagag ttcgctatca ccgaaacggc gtaatctata
     3181 ttagggcgtg caatgtacgc cctaaattta tgctaataac ctctgccaca tttcccgcac
     3241 aaatgctcgc tcggtggtaa attcacttgc gtccaccacg ctgtctttgc gtaataagtt
     3301 taggtggtgg attttgttac gcagtgcggt gtagcaatgt tgtagctgtt cgctttgttc
     3361 ggaacttaaa ataccgcatt ctactgcgct gtcgaaaatt cggacattat ccgaccatac
     3421 tgccattttc gggtgttggt ggctgtgggc taataccaaa tattgggcga taaattcaat
     3481 atcggtaata cctccttgat cttgtttaat atgaaattgc tcggctgaat gcgagcttaa
     3541 atgttggtac attttctgtc gcatttcgca aatttcttgg cgtaattgac cgcttgcacg
     3601 aggctgagca agcgtgcttt ggcggatttt ttcaaaggct tgtttgaggt tttccgcccc
     3661 aaatacacat cttgtccgca cgagggcttg gctttcccac gtccacgctt catttttttg
     3721 ataatgctcg taggcattga aagtgctgac taaaagccca gcctcgcctg atgggcgaag
     3781 tcgcatatcc acttcatata gtacgccggc actggtatta aggttaaaaa tcgagttaat
     3841 tttttgagcc aattttaagt aaaattgatg gcttgaaatc tcttttttac cgccaacagt
     3901 ttggctatcc tctggggcat tatgcaagaa aaccaagtcg agatctgaat tatagcccag
     3961 ttcaatcccg cctagcttgc cgtagccaat aactgcaaac cctttttcat cagcctctaa
     4021 atgttccggc acaccaaagc gttggctgac ttgcttccac gccatattta ccaccgcatt
     4081 aataatcgct tctgctaagt aagtaagatg atcgctgatc ttcattacca gcagcacgcc
     4141 taaaatatca gcagcggcga tgcgtaaaat ttgggtttgt ttgaactgac gtaagccatc
     4201 aatcagtgct tcttcatctt cttcaggaat gcggattaaa taatcctgca aggcagattg
     4261 atatttttca aaagcctgca cgtcggttaa gcctctatgg ctcatcagct catcaagtag
     4321 cattggatat cgagctatct gttccgcaat cataaccgac ttactacaca atgctaaaag
     4381 ttgaggcaga atctgctctt tttcgagcat taattccaaa taggtagttc gggtggtgat
     4441 tttatcgaca atattcaaca cgcgaggcaa taacaataaa tgatcttcac ctttaaaaat
     4501 gctgtcggca attctaggca ttaaattgcg tagcacctct cgccctctta ccccaatcgg
     4561 gcgttttacc caatcttgaa aggtagtaga aaagtgacgg aaaatctccg tataatcatt
     4621 ttctgcaacc tttggataac cttttagcac tgcggataaa tcttcaaggc gaatgttata
     4681 gtgcaaaatg tctttccatt cggctaattt ttcattaacc ggattgcagt tggcttgtgt
     4741 ttcctcttca ccgataattt cattaaaaat ctggcgtact gcttgttgat attggctcaa
     4801 tactgccata aattgttgcc aatcgttaaa ggaatgctcc acccaatgcg ttttttcgct
     4861 atatagatct tgctgataat agctttggca agcaaataca aggcgggctt gcgaggcttc
     4921 atcagtgggt agggtttgag tttgtttatc gtcaatcgct tgtaatacat tttcaatttg
     4981 acggtaaaaa atataggcat tgtggagcgt ttccacctgc gtttgggtta ataaatttaa
     5041 ttctgccaag cgtggtagca cttttaacag gctacgttct tgtaaaattt tatctcgccc
     5101 gccacggatc atttggaaag tttgggcgat aaactccact tcccgaatcc caccggcacc
     5161 aaatttaata ttatcggtta aattacggcg aaccacttca cggctgattt tttctttcat
     5221 ttcacgcaac gattggattg cactgaaatc cagataacgg cggtaaacaa aagggcggag
     5281 catttgcttt aaatagcgat gatttaaatt ttggctatcc tcgcctaaaa tttttgcttt
     5341 aatcatcgca taacgttccc aatcacgccc ttgctcttgg taataatctt ccattgcagt
     5401 aaaactcagc accaaggctc cgctatcacc aaaggggcga agtcgcatat cggtacgata
     5461 cacgaaacca tcagcggtga tctcatctaa tactttaatt aaccgctgcc ccattcgggt
     5521 aaaaaatttg ctgttttcaa tcgatttgcg tccaccttcg gtttcaccaa tatcggggta
     5581 ggtaaaaatc aggtcaatat cggaagaaaa attaagctct cgtccgccca atttgcccat
     5641 acctaaaatc agcagttctt gtgtttcgcc aagagtgttc tttggcgtgc catattcggc
     5701 acagcaacgc tgaaacaacc aatctcgagc ggctagaatc aggctctcgg ctaaatccga
     5761 caaatgctga aataccaatt ctaccgtcgc taatttattt gactgaataa agctcagacg
     5821 agccaattca cggtggcgaa attgccgcaa aaccctcccc aacatttctt cattttccac
     5881 tcttgctaat atttttgcta aacgctcagt ataattgcag caatcatcag gcgtaggaaa
     5941 cttggcaagc cattctgcca gtaaatccgg ctgtttttgc aaggtttgat gcacgaaatt
     6001 ggaaagcgaa atcgccgtca caagcggttg aatttgctca gaattttgca aattgggcgg
     6061 taaattgagt tgggataagg gaattagggt ggtaagcata aatttaggct caaaattgaa
     6121 aatagataga attttacgct cgatcaattc ccctctttag caaagagggc ttaggggaga
     6181 tttggcagag gtaattttac tctcatacga aacattaata tcgtaatcaa atctccccca
     6241 gcccctcttt tctaaagagg ggagaaaaaa ttaaaacact cttttaaacg gtttaataat
     6301 cacatcgcta tacacaccgg cttccacata aggatcttgg cttgcccatt gttgagcttc
     6361 ttcaagtgag ttgaactctg caattacagt tgaaccggtt acgcttgagc cgtcttcagt
     6421 cgggttaggc cctgcgatta ataatcgacc ttctgcctgt aatttttcca aacgagccaa
     6481 atgagccggg cgaacttcta aacgtttttc caacatattg ggattatctt gggcaaagat
     6541 aacataatac atactattct ccttgttttt caggggttaa atcaattagc gataatgctt
     6601 cgtctaattc ggggttattt tctctcggca cagcacgcgg tttgccttct ttatcaatcg
     6661 ctacataggt aaataaggct tcggttacga gataacgttc gcgattgccc tcataaactt
     6721 gtttgataaa gacctcgact ttcacttgca tcgaagaacg ccctatgtgc attaacttgc
     6781 cgtagcagca gaccacatca ccgactgaaa tcgggcggtg gaaaatcatt ttatctaccg
     6841 ttaccgtaac gactctacct tttgccaact ctttggctaa aattgcaccg cctaaatcca
     6901 tctgcgacat aatccaaccg ccgaaaatat cgccattggc gttagtatct gacggcattg
     6961 ccaaagttct taaaatcagt ttcccttccg gggcttttcc atagggttta tctttcattt
     7021 ttttgttcct gcttttcagc atcttttaag taagggtaaa ggacgaaacc ggtaataacc
     7081 gttgcgacta aggttaagcc aataatgcca aaggatttga aatcaaccca aatctcttcc
     7141 gataaatatt gactgatata aatattcagc agcatacaaa tcagaaagaa tactgcccaa
     7201 ccgaagttta ttttattcca cactgcttca ggcaactgaa tttctttgcc taataatttt
     7261 ttgattaatg gtgttttgaa cacaaattgg ctcactaata gcaccaatgc aaacagagcg
     7321 taaacaatgg ttactttcca ttgtaaatat ttaacttcat taaaataggc actcagtaag
     7381 ccgaaaaaga ccaccgagcc acccataata atttgctgtt tttcaatttt gccgtagagc
     7441 atttttaagg cgatcatttg cacgattgta gcgataacca atgcgataga cgccatctga
     7501 ataccgctca ttttatacac gacaaaaaac agaatcagcg gaataaattc aagtaactgt
     7561 ttcattgata ctcctaacgc actgccggca tttggcggta aacttggtaa aagcggaagc
     7621 tgaaaatcgc cataaagacg ttaattaccg cacttaaaac aatggtaatg aatatgccaa
     7681 taaagtcatt accaaacact gtgaacaaac gagataacat ccccggtaat aaataagaaa
     7741 tcacacaaaa taaaatcagc ggtagcattt ttccacgtga taattgaagc gtaaatttaa
     7801 tactttccga tagacttttc tgcggtttct ccaataaata agcataaatc actaacgata
     7861 atttgataaa aaaataaaaa ccgactacca acaccggcaa tgcaataatc actgtttcag
     7921 gcgatgccat tgcaaaagat gcaccgagag aaagcggtaa caccatcaca aattgtaaca
     7981 acagcacagg taggaagtgc tttaatgcgt ttcctgcatt ttggaaaaat tgacgataat
     8041 tgccatcgtt aatcgattgg atattgaaaa tcattaagac attgatcaaa agattgacaa
     8101 cacctaataa aatagttggc aatagtatag acaccatttt agaggcatca atttgaagtt
     8161 gttgcggttg cgactccgcc attagctcag gcgaatttgg cgacactaaa ataaaaacca
     8221 actgcacaac cacaatggtg acaatggcaa acagtgaaaa tgcttgttga ttacgcataa
     8281 agttccaact ttgctgcaat aaatcgacaa atttaattga cataaaatac ccttcaatag
     8341 attgtaaata ttttgttgtg aagtatagca aggcttgagc caaactgcat taacctattg
     8401 tagattttaa tcagttagct aaaataaaag aaaaatttga aagagataat cctatgttaa
     8461 gcttatttga tgcaggacag cgttacctca acactctgcc gaatcagaaa aaattagcca
     8521 attttatgcc agattaccac attattcgct tggtaaaatt ttcctctaaa gtaatgcctg
     8581 cttttgcttg ctttgcatta gtttggcaat attgctttac cgatccgacc caatctattt
     8641 tagccaattc ggtacttact gctgttttcg ccatttctat tccgtttcaa gggttatatt
     8701 ggcttggaaa acgggcaaga tcaccgttat ctttatcatt attggaatgg tatgagtcgc
     8761 ttagacaaaa attaatttcg gcacaagtca aattagaaga aacacaagcg gtaccttctt
     8821 tccaagattt tgcaaattta ctcaagctag cagaagagac ttggggagat gaatattttg
     8881 atgagttata aaataaaaaa agccccactt aaaataagtg gggtaaaact tttgttctaa
     8941 ttctggaggt ttgaattact gtttta
//
LOCUS       DANLRW010000098         8928 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.099, whole genome shotgun sequence.
ACCESSION   DANLRW010000098 DANLRW010000000
VERSION     DANLRW010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8928
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.099"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..197
                     /gene="zapB"
                     /locus_tag="PXA71_002014"
     CDS             <1..197
                     /gene="zapB"
                     /locus_tag="PXA71_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein ZapB"
                     /protein_id="HDL5106092.1"
                     /translation="LEEKIKQAVETIQLLQLEVEELKGKNDAAKQENDTLRSEYEQLK
                     VEQQNFQDRLRSLLGQIDNV"
     gene            253..834
                     /locus_tag="PXA71_002015"
     CDS             253..834
                     /locus_tag="PXA71_002015"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014064645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HDL5106093.1"
                     /translation="MAKLYFYYSSMNAGKSTTLLQSSYNYQERGMNTLVYTAAIDDRF
                     GVGKVNSRIGISQEANLFTADTNLFAEIKALHSNKALHCILIDEAQFLTKTQVYQLSD
                     VVDKLKIPVLCYGLRTDFQAELFEGSKYLLAWADELEELKTICDCGKKAHFVVRLNEK
                     GEAIKDGEQIQIGGNDRYLSVCRYHYKQKLGKL"
     gene            complement(925..2043)
                     /locus_tag="PXA71_002016"
     CDS             complement(925..2043)
                     /locus_tag="PXA71_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HDL5106094.1"
                     /translation="MTTTYFHLMAKPSSFHCNIQCEYCFYLSKEQTIPPEKSQFMNDE
                     TLQNYIRHYIEANQSQRVDFVWQGGEPTLLGLDFYKQAVKYQQKFANGKQITNAIQTN
                     GIALNRQWASFFKENHFLVGLSIDGLSDIHDRYRISTNGKPTFERVKSAVDLLKEVGV
                     EFNTLTVVNDRNWQRGRETYQALKALGSRYMQFIPVVESHKGELQPFSVPPQGYGQFL
                     VDVFHEWLPDRGQIFVIEFDNLLGQWLGYPSNNCVFRPTCGSSLVVEACGDVYSCDHF
                     VYPDYHIGNLNQQQLAEIVSSAAQRQFGQNKQAKLSQACLNCKFRILCHGGCPKHRIV
                     PQANSENHNYLCPSYQQFFAETSSVMRQMSEQIRFAGK"
     gene            complement(2133..3581)
                     /locus_tag="PXA71_002017"
     CDS             complement(2133..3581)
                     /locus_tag="PXA71_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HDL5106095.1"
                     /translation="MNNIIYILLDQVRKDMLGTYGHQVVKTPNLDRLAKDGIRFNNAF
                     TPASVCGPARTSLFTGLMPSSHGIIKNGEKGGTGEIPQQNPNIAGVEGYNSFVIGKWH
                     VGTKSVPEDYGIAGHNFDGYGYPGSQVYKNLVFNQPPTHSNRYREWLAEKGYDAPEVS
                     RAYFGDNPHLRVQELCGLLSGSREQTIEWFIIDEAKKYIQASLDEKKPFFAWINFWGP
                     HTPCVVPEPYYSMYDPSQVVLDESFFKPLEGKPNHFRTISQMWGMWEASEDRWKEVIS
                     KFWGYITLIDDAIGELFRFLEENNLYENTFLVATADHGDAMGAHKMIEKGEFMFETTY
                     NIPLIIKDPHSTRVNEVDDNLVYLHDLTSTVYDVANQPIPTAFQGESILPITRQSQNN
                     DRKGLLCQLAGHFVYFEQRMWRRKDYKLVFNATDRCELYDVRKDPEEMHNLFYDEAYQ
                     AVKKEMLEEMRQEMKRLNDPLENWVYRIIDEI"
     gene            complement(3728..5425)
                     /locus_tag="PXA71_002018"
     CDS             complement(3728..5425)
                     /locus_tag="PXA71_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="solute:sodium symporter family transporter"
                     /protein_id="HDL5106096.1"
                     /translation="MLLTIITFLVVTGLVGYISWLKTRNDDLSTSKGYFLAGRGLSAT
                     VIGCSMVLTSLSTEQLIGVNANSYAGNFSIIAWTVPAVIPLCFLALYLLPKYIRNGYT
                     TIPEFFENRFDRQTRLIMSGLFLVFYLFIVIPTALYTGAIAFNKIFNLETAFGLSYGA
                     AITYTVIAIGIVGAIYAIFGGLKAVAVSDTWNAVLLVIGALLVPVFALIYLGNGSMAE
                     GVKIITTTHVEKWNAVGSATDAVPWPTIFTGIMVVHFFYWTTNQAIVQRALGARDLKA
                     GQKGILIAALFLLLLPLILNLPGLLSFHILGEGLKPIDVSYPELVNKTFPTVLQGFFI
                     AALFGAILSTFNSFLNSAATIYCKDLLPSISKKQFTDAELISYAKKVSAVMAVITMIF
                     GPLLMFGTDGIFLLTKRFAGFVNIPIVALFVIGLFNKTVSGKAARIALLAHVILYFCI
                     VWVFDVKINFVYVQAGLFVFDVALMLILGIFLKRATPYEDNKINHANVDLTSWEYAPL
                     AVASIVLGLFTLYAFLSPLGLASPDGNPAMVLAVYAVLQAVVCVVFFAKCKGKKAVN"
     gene            complement(5569..6120)
                     /locus_tag="PXA71_002019"
     CDS             complement(5569..6120)
                     /locus_tag="PXA71_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDL5106097.1"
                     /translation="MNNMPTPEQLMSCQLSVMSDLEKGVVIYSQGYHAREFYFLKSGL
                     IGLYHMLENGKESLVRVYKANDYFGFRTFFGDNRYHCSARVLQPAELIRITPLNFIEF
                     WSNNSALIISLLKQLSTELQDAEHRLSMVSYQKTQERVMNSIHYLHQRYPNYHWTNRE
                     IAEFAGCETETAIRLRRELKKIS"
     gene            6219..7028
                     /locus_tag="PXA71_002020"
     CDS             6219..7028
                     /locus_tag="PXA71_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDL5106098.1"
                     /translation="MTMTVIIILIICGIIVNITSALFGIGGGVLMMPILHSLFPELPL
                     QVISACSLTIVIGSATINLCLFHHQQIKINRKNVLIWSLAMMLGVQIGFELSFLFSDN
                     SIIAIFILTLLTLSFKTLFHKPRVKAIVPPKPKEAVSNATMCSLGGLIAGITGIGGGS
                     IMAPIVTQIRSVSPKQVAVYTNYMMVIGGIGNLYGYLSRPFVLNSTLATWQIGYVNFA
                     IVGTVVISSLFTVYFSMKLRNILSPELTTKLLGVILFTIACYMGFLQYLFT"
     gene            complement(7045..7737)
                     /gene="tsaB"
                     /locus_tag="PXA71_002021"
     CDS             complement(7045..7737)
                     /gene="tsaB"
                     /locus_tag="PXA71_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HDL5106099.1"
                     /translation="MKPSILALDTATEACSVALQYNGNITFLDEISPRSHTQRILPMV
                     DELLNQANIELKEVNYLVFGRGPGSFTGVRVGVSVAQGLAMGANLPVVAVSNLKAMAE
                     EAYQKLGATKVIALIDARMNEVYFAQFERKGEEWNEVVAEQVCSPEVAISQFQMSEET
                     VVVGTGWAAYSQFSEQNLPLVISDITLPSSRYMLSIAETEIQKGNIQSAFEIEPVYLR
                     NEVTWEKLPHKQ"
     gene            complement(7824..8906)
                     /gene="aroG"
                     /locus_tag="PXA71_002022"
     CDS             complement(7824..8906)
                     /gene="aroG"
                     /locus_tag="PXA71_002022"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HDL5106100.1"
                     /translation="MSYIKNDDVRITSIEELLPPIALLEAYPASDVAAETVAKTRQSI
                     HKILHGADDRLLVVIGPCSIHDPKAALEYAQKIKAMRADPKINQNLEVVMRVYFEKPR
                     TTVGWKGLINDPYLNETFALNDGLRIARKVLSDINDLSVPTAGEFLDMITPQYVADFM
                     SWGAIGARTTESQVHRELASGLSCAVGFKNGTNGSVKIALDAISSAKSPHHFLSVTKF
                     GHSAIVSTAGNPDCHIILRGGDSATNYDADSVAAACAAIEKSGGRPHVMIDFSHANSQ
                     KQFKRQMDVCADVCNQIAGGSDFISGVMIESHLVEGRQDLIEGKGLEALVYGQSITDG
                     CIGWEDSEKALFALAEAVEKRRNFAK"
BASE COUNT         2476 a         1982 c         1884 g         2586 t
ORIGIN      
        1 aattagaaga aaaaattaaa caagctgttg aaactattca attacttcaa ttagaagttg
       61 aagaattaaa aggtaaaaac gatgcagcga aacaagaaaa cgacaccttg cgcagcgaat
      121 atgaacaatt aaaagtggaa caacaaaact tccaagatcg tttacgttca cttttaggtc
      181 aaatcgacaa cgtttaattc tattttcagc acaaacggct aaatttttag ccgtttttta
      241 tttgttacag ctatggcaaa actctatttt tactactcct caatgaatgc aggcaaatct
      301 actactctgc ttcaatcttc ttataattac caagaacgtg gaatgaacac tttagtttat
      361 accgccgcta ttgatgaccg tttcggtgtg gggaaagtca actctcgtat cggtatttca
      421 caagaagcca atttatttac cgctgatacc aatctatttg cggaaattaa ggcattacac
      481 tcaaacaaag cgttacactg tatcttgatt gatgaggctc agtttttaac taaaacacag
      541 gtttatcaat taagtgatgt ggtcgataaa ctcaaaattc cggtgctttg ctacgggcta
      601 cgcaccgatt tccaagctga attatttgaa ggtagcaaat atttgttggc ttgggcagat
      661 gagctggaag aactcaaaac catctgtgat tgtggcaaaa aagcccattt tgtcgttcga
      721 ttaaatgaaa aaggcgaagc cattaaagac ggtgaacaaa tacaaatcgg cggcaatgat
      781 agatatctct ctgtttgccg ttatcattac aaacaaaagt taggtaagct ataagctaca
      841 agaagcagca agcggttaaa ttttcgggaa tttttgcaaa ttttcagcga aatttaaccg
      901 cttgtttgtg ttatttacct ctctttactt tcctgcaaac cgaatttgct cactcatttg
      961 tctcatcaca ctcgaagtct cggcaaaaaa ctgttggtaa gaggggcaaa ggtagttgtg
     1021 gttttcgctg tttgcttggg ggacgatgcg gtgtttgggg cagccgccgt ggcaaagtat
     1081 gcggaatttg cagtttaggc aggcttgcga gagttttgcc tgtttattct gcccgaattg
     1141 gcgttgggcg gctgatgaga cgatctctgc cagctgctgt tggttgaggt tgccgatgtg
     1201 gtaatcggga tagacgaaat ggtcgcaact gtacacatcg ccacaggctt ccaccaccag
     1261 cgagctgcca caggtcgggc ggaatacaca gttgttggag ggatagccaa gccattgccc
     1321 gagcaggtta tcaaactcga tcacaaaaat ctgcccacgg tcaggcagcc attcgtgaaa
     1381 aacatccact aaaaattgcc cgtagccttg gggcggaacg gaaaagggtt gtaattcccc
     1441 cttgtggctt tccaccaccg gaatgaactg catataacgg ctaccgaggg ctttgagggc
     1501 ttgataggtt tctctgcccc gttgccagtt gcggtcgttc accaccgtga gggtgttaaa
     1561 ttccacgcca acctctttca ataaatcgac cgcacttttc acccgttcaa aggtcggttt
     1621 accgttggtg gaaatgcggt agcggtcgtg aatgtcgctc agtccgtcaa tggataagcc
     1681 caccagaaaa tgattctctt tgaaaaagct cgcccactgg cggtttaggg caatgccgtt
     1741 ggtttggatt gcgttggtga tctgcttgcc gtttgcaaat ttttgttgat atttgaccgc
     1801 ttgtttgtag aaatctaagc ccagcagggt cggctcgccc ccctgccaca caaaatccac
     1861 ccgttggctt tggttggctt caatgtaatg acgaatgtag ttttgcagcg tttcatcgtt
     1921 cataaactgc gatttttctg gcggaatggt ctgttccttg ctcagataaa aacagtactc
     1981 gcactgaata ttacagtgaa aactgctggg ttttgccatt aggtggaagt aggtggtggt
     2041 cattgtatct ctaaattgta ggggcggact ttatgttcgc ccattgttta cattaatttt
     2101 cgggcgggta taaaacccgc ctctacaaac aattatatct catcaataat ccgatacacc
     2161 caattttcca gtgggtcgtt gaggcgtttc atttcctgtc gcatttcttc caacatctct
     2221 tttttcacgg cttggtaggc ttcgtcataa aagaggttgt gcatctcttc ggggtctttt
     2281 ctgacatcgt agagttcgca gcggtcggtg gcgttgaaga ccaatttgta atccttacgc
     2341 cgccacattc gctgttcaaa atagacaaaa tgccctgcca gttggcacaa caagcctttg
     2401 cggtcgttgt tttggctttg tctggttatc ggcagaatac tctcgccttg gaaagcggtc
     2461 gggatcggtt gatttgccac atcatacacg gtggaagtga gatcgtgcaa ataaacgagg
     2521 ttgtcatcga cttcgttcac ccttgtagag tgcggatctt taataatcag cggaatgttg
     2581 taggtggttt caaacataaa ctcgcctttt tcgatcatct tatgcgcccc catcgcatcg
     2641 ccgtggtcgg cggtagcaac gaggaaggta ttttcataga gattgttctc ttccaagaaa
     2701 cggaacagct cgccaatggc atcgtcaatc agcgtgatgt agccccagaa tttagaaatc
     2761 acctctttcc aacgatcttc gctcgcctcc cacattcccc acatttgtga aatggtgcgg
     2821 aagtggttcg gtttgccctc aagcggtttg aagaaactct cgtccaatac cacttggctt
     2881 gggtcataca ttgaataata cggctccggc actacacacg gagtgtgcgg cccccagaag
     2941 ttgatccacg caaagaacgg ttttttctca tcaagggagg cttgaatgta ttttttcgcc
     3001 tcgtcaatga taaaccactc tattgtctgc tcgcgactgc cggaaagcaa accacagagt
     3061 tcctgcacac gcaggtgtgg attgtcgcca aaataggctc gactgacttc gggtgcgtca
     3121 tagccctttt ccgccagcca ttcacgataa cggttggagt gtgttggcgg ctgattaaac
     3181 acgaggtttt tatacacttg gctgcccggg tagccatagc cgtcaaagtt atgaccggcg
     3241 atgccataat cttcgggaac ggattttgta ccaacgtgcc atttgccgat cacaaaggag
     3301 ttatagccct ccacgccggc aatattaggg ttttgttgtg gaatttcgcc tgtgccgcct
     3361 ttttcgccgt ttttgataat cccgtggctg gacggcatta agccggtaaa cagcgaggtg
     3421 cgagccggcc cgcagaccga agccggcgta aaggcgttgt taaaccgaat gccgtctttc
     3481 gccaagcgat ccaaattcgg ggtttttacc acctgatgcc cgtaagtgcc gagcatatct
     3541 ttacgcactt gatctaacaa aatatagatg atgttattca taatgacctc tttaaggctt
     3601 gttaataacc gataaattat caagtttcgg agatctgttc ccctctttag caaagagggg
     3661 atttttgatc tcgagccttt tccgttcttg gtatttttat actaatgagg agaaggctca
     3721 cattcattta attcaccgcc tttttgcctt tacattttgc aaaaaacacg acacaaacca
     3781 ccgcttgtag cacagcatac accgccagca ccattgccgg attgccgtct ggtgaggcta
     3841 aaccgagcgg agagaggaaa gcgtatagcg tgaataagcc caacacgata gaagccactg
     3901 ccagtggggc atattcccag ctggttaagt ccacattggc gtggttgatt ttgttgtctt
     3961 cgtatggagt cgcacgtttt aggaaaattc ctaaaatcag cattaacgcc acatcgaaca
     4021 cgaacaagcc agcttgcaca tacacgaagt tgatttttac atcaaacacc caaacgatgc
     4081 agaagtagag aataacgtgt gcgagtaagg caatgcgtgc ggctttgcct gagacggttt
     4141 tgttgaataa gccgatgaca aacagtgcca caatcggaat gttcacaaaa ccggcgaaac
     4201 gtttggtcag caagaaaata ccgtctgtgc cgaacatcag taacggccca aagatcatcg
     4261 taatcaccgc cattaccgca gagacttttt tcgcataact tatcagttcc gcatctgtga
     4321 actgtttttt gctgatagac ggcagtaagt ctttacagta aatggttgcc gctgagttta
     4381 agaacgagtt gaaggtactc aaaatcgccc cgaacagtgc ggcaataaag aagccttgta
     4441 gcacggttgg gaaagtttta ttcactaatt cagggtaaga cacatcaatc ggtttcaagc
     4501 cctcacctaa aatatggaaa ctgagtaagc ccggtaagtt taagataagc ggtagcaata
     4561 ataagaacag tgccgcaatt aagatccctt tttgaccggc ttttaagtct ctcgccccca
     4621 aggcacgttg cacaatggct tggttggtcg tccagtagaa gaaatgcacc accataatac
     4681 cggtgaaaat ggtcggccaa ggcactgcat cggtggcact acccaccgca ttccattttt
     4741 caacgtgagt agtggtgatg attttcaccc cttctgccat actgccatta cctaaataga
     4801 taagtgcaaa caccggcact aataatgccc caatgactaa caagaccgca ttccaagtgt
     4861 ctgacaccgc caccgctttt aagccaccga aaatggcata aatcgcccca acaataccaa
     4921 tcgcaatcac cgtataggta atcgctgccc catagcttaa gccgaaggca gtttcaaggt
     4981 tgaagatttt attgaaggca atcgcaccgg tgtaaagtgc agtcggaatg acgatgaaaa
     5041 gatagaacac caaaaacaag cccgacataa tcaaacgggt ttggcggtcg aaacggtttt
     5101 caaagaactc cggaatggtg gtataaccgt tgcggatata tttcggcaac agataaagtg
     5161 ccaagaagca aagcggaatt accgccggca cagtccacgc aataattgag aaattaccgg
     5221 cataagagtt ggcattcacg ccgataagtt gctcggtaga aagggaggtt aagaccatcg
     5281 aacagccgat aaccgtagca ctcaagccac gccctgccaa gaaataacct ttagatgtcg
     5341 aaagatcgtc gtttctggtt tttagccaag agatataccc gactaatcca gttacaacca
     5401 gaaaggtaat tattgttaat aacatattct tcacctcaat atgactatat aaatgatata
     5461 tcccattaga gacggcaata gcataaatct tatttttaac gatagaatat gatgtttgtc
     5521 ataatagata tgtgatggtg atcacaacta tgaataattt atgacaattt aactgatttt
     5581 ctttaattct cgccttaatc gaatggctgt ttcggtttca caacctgcaa attcggcgat
     5641 ttcacggtta gtccagtgat aattgggata acgttggtgt aaataatgaa tactgttcat
     5701 tacccgctct tgcgtttttt gataggaaac cattgataaa cgatgctctg cgtcttgtaa
     5761 ttctgtcgag agctgtttta acagagagat aattaaggcg gaattattcg accaaaactc
     5821 aatgaaattt aagggggtaa tacgtatcaa ttctgccggc tgtaacaccc gagccgagca
     5881 atggtagcga ttatcgccaa aaaaggttct aaacccaaaa taatcgttgg ctttatatac
     5941 cctcaccaag ctctctttac cattttcaag catatggtac agccctatta atccgctttt
     6001 taaaaaataa aattctctgg cgtgataacc ctgagaataa atgacgactc ctttttctag
     6061 atcagacatt acacttaatt ggcaagacat caattgttcg ggggttggca tattgttcat
     6121 tgattatcct tattatttta ttttttccat atatgattgc gatcataatc ctttatttag
     6181 aaaattttgc atacttatca cactttagga gatggattat gacaatgacc gtgataatta
     6241 ttttgatcat ttgtggcatt atagtcaata tcacttctgc actatttggg attggcgggg
     6301 gtgttttaat gatgccgatt ttacattcac tgtttcctga actgcctctc caagtgattt
     6361 ccgcctgctc tcttaccatt gtgattggtt cagccactat caatttatgc ttattccacc
     6421 atcaacagat aaaaatcaat cgaaaaaatg tgttgatttg gtcacttgcg atgatgttag
     6481 gcgtacaaat tgggtttgaa ctcagttttc ttttctctga taacagcatt atcgctatct
     6541 ttattctaac cctgctgaca ctttcattta aaaccctatt tcacaaacca agagttaaag
     6601 caatagtacc acctaaacca aaagaagcag tatctaatgc cacaatgtgc agtttaggcg
     6661 gtttaattgc aggtattacc ggcattggcg gcggttcgat tatggctccg attgtcacgc
     6721 aaatacgctc ggtttcaccg aaacaggttg cagtttatac taactatatg atggtgattg
     6781 gcggaatcgg caatttatat ggctacttat cccgcccttt tgtgttgaat tcaaccttag
     6841 caacttggca aatcggctat gtgaattttg caattgtcgg caccgtagtg ataagttctc
     6901 tctttactgt ctatttttca atgaaattac gcaatatctt gagtcccgaa ttaactacta
     6961 aattacttgg tgtaatccta ttcactattg cctgttatat gggctttttg caatatttat
     7021 tcacttaacc ataagttcaa tagattattg cttatgaggt agtttttccc aagtaacttc
     7081 attacgcaaa tacaccggtt ctatttcaaa agcagattgg atattgcctt tttgaatctc
     7141 agtttcagca atcgaaagca tatatcggct ggaaggcaag gtaatatcac tgataacaag
     7201 cggtagattt tgctcagaaa attgcgaata tgccgcccaa cctgtgccaa ccaccacagt
     7261 ctcttcactc atttggaatt gacttattgc gacttctggc gaacagactt gttcagccac
     7321 cacttcattc cattcttcac cctttcgttc aaattgagca aagtaaactt cattcattcg
     7381 ggcatcaatt aaggcaatta cctttgttgc acctaatttt tggtatgctt cttctgccat
     7441 tgcttttaag ttagaaacag ctaccaccgg caaattcgct cccattgcca acccttgtgc
     7501 cacacttaca ccgaccctca caccggtaaa actgcccggc ccacgtccga atactaaata
     7561 atttacttct ttgagttcga tattggcttg attaagtaat tcatctacca tcggcaaaat
     7621 acgttgagta tgggaacgag ggctgatttc atctaagaac gtgatatttc cgttatactg
     7681 taacgctaca gagcaagcct ctgttgcagt atctaaagca agaatgctgg gtttcatcat
     7741 atgtttagtt tgaataaatt aaatttgctt taaggttaaa caaataaagg gcgaattata
     7801 ttcgccctcg gttcaagaaa agattatttt gcaaaatttc tgcgcttttc aaccgcttca
     7861 gcaagtgcga ataacgcttt ttcactatct tcccagccaa tgcagccgtc tgtaatactt
     7921 tgtccgtaaa ctaacgcctc taaacctttg ccttcaatta agtcttggcg accttctacc
     7981 aagtggcttt caatcatcac acctgaaata aagtctgatc cacctgcaat ttggttgcac
     8041 acatcagcac aaacgtccat ttggcgtttg aactgcttct ggctgttagc gtggctgaaa
     8101 tcgatcatca cgtgtggacg tccgccggat ttctcaatcg cagcacaagc cgctgcaacg
     8161 gagtcagcat cgtagttggt tgcgctatcg ccaccacgca aaataatgtg acagtcagga
     8221 tttcctgctg ttgaaacaat cgcagaatgc ccgaatttag tgaccgataa gaaatggtgt
     8281 ggcgattttg cggaagaaat tgcatctaat gcaattttca cactaccatt cgtgccgttt
     8341 ttaaaaccta ccgcacagga taaaccagag gctaattcac ggtggacttg agattcagtc
     8401 gttctcgccc caattgctcc ccagctcata aagtcagcca catattgtgg tgtaatcata
     8461 tccaaaaact cgccggcagt cggcacgctt aaatcattaa tatcagataa tactttacgg
     8521 gcaatgcgta aaccatcgtt taaggcaaag gtttcgttca aataagggtc gttaattaag
     8581 cctttccaac caacggttgt acggggtttt tcaaaataga cacgcatcac cacttctaag
     8641 ttttggttaa ttttcggatc agcacgcatt gctttaattt tttgtgcata ttctaatgcc
     8701 gctttcgggt cgtgaatgga gcaaggtcca atcaccacta ataagcgatc atccgcaccg
     8761 tgtaaaattt tgtggattga ttgacgggtt ttagcaacgg tttccgctgc aacatcactt
     8821 gccggatagg cttccagtaa tgcaataggt ggtagtaatt cttcaatact ggtaattctg
     8881 acatcgtcat ttttgatata agacattgtg ttcactctct aaataaaa
//
LOCUS       DANLRW010000099         8791 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.100, whole genome shotgun sequence.
ACCESSION   DANLRW010000099 DANLRW010000000
VERSION     DANLRW010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8791
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.100"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..661
                     /locus_tag="PXA71_002023"
     CDS             <1..661
                     /locus_tag="PXA71_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5106101.1"
                     /translation="TTIVGPNGGGKSTLLKILLKLLSPNKGKVIHQKGLKIGYVPQKL
                     HLEPSMPITVYRFLALKPHTTKEMINQALDLFSITHLTENSMQKLSGGELQRVLLARA
                     ILDRPQLLVLDEPMQGVDIIGQTELYQLLNKTRDLLNCAILMVSHDLNIVMANTDEVL
                     CINKHICCAGSPEVITHDPSFIHFFGDQFARNVAFYSHKHNHHHNLHGDICLGECSCE
                     H"
     gene            826..3639
                     /gene="sucA"
                     /locus_tag="PXA71_002024"
     CDS             826..3639
                     /gene="sucA"
                     /locus_tag="PXA71_002024"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HDL5106102.1"
                     /translation="MQYTHFDDWLASSALGGANQSYIEEIYEQYLENPANVDESWRNI
                     FDSFPKTPQVEQAHTPIRDYFRKLAREQQPQSVTIIDPEAGAKQVRLLQWINAHRFRG
                     YLEAKLDPINYYRWKTSSVPELDYKYHGFTDEDLNETFTVGRYVYDKDTMKLSELDKA
                     LKETYLGPIGLEFMHVQDIEQRNWLQAKMESVLNKPLFTKAEKLNLLSELTAADGLER
                     YLGAKFPGAKRFSLEGSDAFIPMMKEIIRHASRQGMTDVVLGMAHRGRLNMLVNVFGK
                     RPAELFDEFAGKHADESRTGDVKYHQGFSSNFAVDDKNVHLTLAFNPSHLEIVSPVVI
                     GSVRARQERMRDIEHEKVLAVTVHGDSAVAGQGVVQETLNMANVRGYKVGGTIRIVIN
                     NQIGFTTSNPNDTRSTEFCTDIAKMIQAPIIHVNGDDPEAVAFAARMAVEYRTKFKRD
                     IFIDLISYRRHGHNEADEPLATQPMMYSIIKKHPTPRKVYADRLITEGVLTNEQEIEM
                     LNLYRDALDNGECVVPEWREMDMAAVDWLQYLNYDWTALYESKFPEERFLTIAKRVCE
                     YPASLKAHSRVEKIYTDRKEMYEGKKLFDWGMAETMAYATLLDEGTHVRLSGEDAGRG
                     TFFHRHAVIHNQNDGTGYVPLTQLHANQGRFQVWDSVLSEEAVLAFEYGFATTDPKTL
                     TIWEAQFGDFANGAQIVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARVERY
                     LQLCAQQNIQVCVPSTPAQVYHMLRRQAIRKMRRPLVAITPKSLLRHPLAVSSLDELI
                     NGSFQNVIGELDNIDPKQVKRVVMCSGKVYYDLIEKRRENNQTDVAIIRIEQLYPFPL
                     EEMQQILEPYAHVKDFVWCQEEPLNQGAWYCSKHNFEASLPEDAKLTYAGRPASASPA
                     VGYPSLHAKQQKQLVEDALTIAE"
     gene            3742..4971
                     /gene="odhB"
                     /locus_tag="PXA71_002025"
     CDS             3742..4971
                     /gene="odhB"
                     /locus_tag="PXA71_002025"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HDL5106103.1"
                     /translation="MTIEILTPDLPESVADATVATWHKKVGDNVKRDEILVEIETDKV
                     VLEVPASSDGILAEITQEQGATVVSKQSLGKLVVAKAGDISSATIEQKTESTPSDRKH
                     AAIENSHANADDQGPAIRRLLAEHDLQAADIQGSGVGGRITREDIEKEIAKRVQINQV
                     KGSATSQNTVSTVAFNSRSEKRVPMTRLRKRIAERLLEAKNTTAMLTTFNELDMQPIM
                     NLRKTYGEKFEKQHGVRLGFMSFYIKAVVEALKRYPEINASIDGDDVVYHNYFDISIA
                     VSTPRGLVTPVLRDCDKMSMADIEKKIKELAEKGRDGKLTVEDLTGGNFTITNGGVFG
                     SLMSTPIINPPQSAILGMHAIKDRPVAIDGQVVIRPMMYLALSYDHRLIDGKESVGFL
                     VAVKELLEDPTRLLLEI"
     gene            5264..6424
                     /gene="sucC"
                     /locus_tag="PXA71_002026"
     CDS             5264..6424
                     /gene="sucC"
                     /locus_tag="PXA71_002026"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDL5106104.1"
                     /translation="MNLHEYQAKQIFKQYGLPVSQGIACKTAEEAVEAIKQLQGEQWA
                     IKCQVHAGGRGKAGGVKLVRNEAEVREFADKWLGKRLVTFQTDANGQPVNTLYLEETC
                     NIDRELYLGAVVDRSAQKVIFMASSAGGMNIEEVAEKTPELIHKAVIDPLTGGQGYQG
                     RELAFKLGLKGDEVKQFADIFVKLANLFVEKDLALLEVNPLVITKEGQLLCLDAKMSI
                     DSNALYRHPELKELQDPSQDDEREAEAEKWNLNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLYGGKPANFLDVGGGATKERVAAAFKLILSDPNVKAVLVNIFGGIVRCDLIADGVIA
                     AVNEVGVNVPVIVRLEGTNAAQGREILANSGLSILAASSLKQAAELAVKSAN"
     gene            6433..7302
                     /gene="sucD"
                     /locus_tag="PXA71_002027"
     CDS             6433..7302
                     /gene="sucD"
                     /locus_tag="PXA71_002027"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDL5106105.1"
                     /translation="MSILIDKNTKVICQGFTGGQGTFHSEQALAYGTQLVGGVSPNKG
                     GTTHLGLPVFNTVREAVEATGATATVIYVPAPGCKDAILEAIDAGIQLIVCITEGIPT
                     LDMLQVKQRLNQTGVRMIGPNCPGVITPDECKIGIMPGNIHKKGNIGIVSRSGTLTYE
                     AVKQTTDEGFGQSTCVGIGGDPIPGSNFIDILKLFQDDPETEAIVMIGEIGGSAEEEA
                     AAFIKENVTKPVVSYIAGVTAPKGKRMGHAGAIISGGKGTADEKFKILEDAGVTTVRS
                     LAEIGSALRKILG"
     gene            complement(7373..>8791)
                     /locus_tag="PXA71_002028"
     CDS             complement(7373..>8791)
                     /locus_tag="PXA71_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDL5106106.1"
                     /translation="SVLTWIVNTIDGPLWDVTIILLLGAGLFFTLTTGFVQLRLLPQS
                     LREMWGGRSTEGKSLTPFQAFTTGLASRVGVGNIGGVATAIALGGPGAVFWMWITALM
                     GMSSAFAESSLAQLYKTKDPNGMFRGGPAYYITRGLKLPSLAIAFAVTLIFTFGFAFN
                     AVQSNSIVEATKNAWDWNPVYVGMTLVVITGLIISGGVKRIGKVSAQVVPMMALFYLI
                     IAVIILGMNIEKVPSIISLIIESAFDFSAAAGGTFGALVSKTMLMGIKRGLFSNEAGM
                     GSAPNSAATSDAKHPASQGLIQMLGVFVDTIVVCTCTAVIILMSNNYGGETLRGISLT
                     QSALQFHLGEFGLHFLAFVILLFCFTSIIGNYAYAETNIRYIKNSPWFVWGFRAIVLF
                     FVYFGAVRDGGIVWAFADTVMASMAVINLVAILILAPIVWIILKDYLRQVKSGKEPVF
                     RIEEHQDLIHKGVDPLIWKSKE"
BASE COUNT         2736 a         1907 c         1872 g         2276 t
ORIGIN      
        1 cacgacgata gtcgggccaa atggtggagg aaaatctacc ctgcttaaaa ttttgctaaa
       61 attacttagc ccaaataaag gaaaggttat tcatcaaaaa ggactcaaaa ttggctatgt
      121 accacaaaaa ttgcatttag aaccctcgat gcccattact gtttatcgat ttcttgcgct
      181 aaaaccacat actaccaaag aaatgattaa ccaagcacta gatctgtttt ctattaccca
      241 tctcactgaa aatagtatgc aaaaattatc gggtggtgaa cttcaacgtg tattgctggc
      301 tcgggcaatt ttagatcgtc cgcaactctt agtgttagat gaaccaatgc aaggcgttga
      361 tattataggc caaaccgaac tctatcaatt acttaataaa acaagggatc tccttaactg
      421 tgctatttta atggtctcac acgacttaaa tattgtgatg gcgaatacag atgaagtgct
      481 ttgcatcaat aaacatattt gttgtgccgg aagccccgaa gtcattacac acgatccgag
      541 ctttatccat ttttttggcg accaatttgc acgtaatgtt gcattttatt cacataaaca
      601 taaccatcac cataatttac atggcgatat ctgccttggt gaatgtagtt gtgagcactg
      661 ataggcgtcc tttttaccaa atgtttaaaa tttgtaaaaa taatgctaaa aataaccgct
      721 tgcagcacaa gatttatcta aaaatcagac ttacttcaca ttttatttgc ttaaattgga
      781 gtataataag ggcgtgattt cataccacaa acaggtcagg tctttatgca atatacacat
      841 tttgatgatt ggcttgcatc atctgcatta ggcggtgcaa accaatctta tatagaagaa
      901 atttatgaac agtatctaga aaatccagca aatgttgatg aaagctggag aaacatcttt
      961 gattcatttc ctaaaactcc ccaagttgaa caagctcaca cccctattcg tgactatttc
     1021 cgtaaattag cccgtgaaca gcaacctcaa tccgtcacta ttattgaccc agaagcaggg
     1081 gcgaaacaag ttcgcttact gcaatggatt aacgctcacc gtttccgtgg ctatttagag
     1141 gcaaaactag acccaattaa ctattaccgt tggaaaacct ccagcgtgcc tgaattggac
     1201 tacaaatatc acggcttcac cgatgaagat ctcaacgaaa cttttacggt cggtcgctat
     1261 gtctatgata aagacacaat gaagctcagc gaactggata aagccctaaa agaaacttat
     1321 ttagggccta ttggtttaga atttatgcac gttcaagata ttgaacaacg caactggctt
     1381 caagccaaaa tggaaagcgt gctaaacaaa ccgctgttca ccaaagcaga aaaactgaat
     1441 ttattaagcg aattgaccgc tgccgatggt ttagagcgtt acttaggggc aaaattcccg
     1501 ggggcaaaac ggttctcatt ggaaggtagt gatgccttta ttccgatgat gaaagaaatt
     1561 atccgccacg cttcccgtca aggtatgacc gatgtggttt taggtatggc acaccgtggt
     1621 cgtttgaata tgttagtgaa cgtatttggt aaacgcccgg cagaattgtt tgatgaattt
     1681 gccggcaaac acgctgatga aagccgcacg ggcgatgtga aataccacca aggtttctcc
     1741 tcaaactttg ccgtagatga taaaaacgtt caccttaccc ttgctttcaa cccatcgcat
     1801 ttagagattg ttagcccggt ggtaatcggc tcagtgcgtg caagacaaga acgtatgcgt
     1861 gatatcgaac acgaaaaggt gcttgcggtg accgttcacg gtgactctgc agtggcaggg
     1921 caaggtgtag tgcaagaaac cttaaatatg gcaaatgttc gtggctataa agtaggaggc
     1981 actatccgta ttgtgatcaa caaccaaatc ggatttacca cctctaaccc aaatgacacc
     2041 cgctccaccg aattttgtac cgacattgcc aaaatgattc aggcaccgat tattcacgtt
     2101 aatggtgatg atccggaagc tgttgccttt gcagcgagaa tggctgtgga atatcgtact
     2161 aaatttaaac gtgatatttt tattgattta atctcttacc gtcgtcacgg tcataatgaa
     2221 gccgatgagc ctttagcaac tcagccaatg atgtatagca tcatcaaaaa acacccgaca
     2281 cctcgcaaag tctatgcgga tcgtttaatt accgaaggtg ttttaaccaa cgagcaagaa
     2341 atcgagatgt taaacctgta tcgtgatgcc ttagacaacg gcgaatgcgt tgtgccggaa
     2401 tggcgtgaaa tggatatggc agcggtcgat tggctacaat atctcaatta cgactggact
     2461 gccctatacg aaagtaaatt ccctgaagaa cgattcttaa ccattgccaa acgggtgtgc
     2521 gaatatccgg cttcgcttaa agctcattct cgggttgaaa agatctacac tgatcgcaaa
     2581 gagatgtatg aaggcaagaa attattcgac tggggtatgg ctgaaacaat ggcatacgct
     2641 actttgttag acgaaggcac acatgttcgc ctttcaggag aagatgccgg acgtggcact
     2701 ttcttccatc gccatgcggt aatccataac caaaatgatg gaacaggcta tgtgccactt
     2761 actcaactgc acgccaatca agggcgtttc caagtatggg attccgtact ctctgaagaa
     2821 gcggtactcg cctttgaata tggctttgcc actaccgacc cgaaaacact gaccatttgg
     2881 gaagctcaat ttggagattt cgctaacgga gctcaaattg ttatcgacca atttatcagc
     2941 tcaggcgaac aaaaatgggg cagaatgtgc ggtttagtga tgttattacc acacggctat
     3001 gaaggtcaag ggccggaaca ctcctctgcc cgagtggaac gctatttaca gctttgtgct
     3061 cagcaaaata ttcaagtttg cgtgccatca acaccggcac aggtttacca tatgttacgc
     3121 cgtcaagcga tccgcaaaat gcgtcgccca ttggttgcaa tcacaccaaa atcattgcta
     3181 cgccacccac ttgcggtgtc atctcttgat gaattgatta acggttcatt ccaaaatgtg
     3241 attggcgagc tcgataatat cgatcctaaa caagtcaaac gtgtggtgat gtgttcgggt
     3301 aaagtgtact acgacttaat tgaaaaacgc cgtgaaaata accaaacgga cgttgccatt
     3361 attcgtatcg aacagctcta cccgttccca cttgaagaaa tgcaacaaat tctcgagcct
     3421 tacgctcacg ttaaagactt tgtctggtgt caagaagagc cactaaacca aggtgcgtgg
     3481 tattgcagca agcacaattt tgaggcttct ctgccggaag atgcaaaatt aacttacgca
     3541 ggcagaccgg cttctgcttc accggcggtg ggttatccat cgttacacgc aaaacaacaa
     3601 aaacaacttg ttgaagatgc tttaacgatc gctgaataat aaaatgggcg tatatacgcc
     3661 ctacaagcgg ttcactttta accaaatttt acaatttacg ctgtcggagt tttaaaactc
     3721 tctcgaaaaa aggaataagt tatgaccatt gaaattttaa cccccgattt acccgaatct
     3781 gttgccgatg cgaccgttgc cacttggcat aaaaaagtgg gcgacaatgt aaaacgtgat
     3841 gaaattttag tcgaaattga aacagacaaa gtcgttttag aagtaccggc ttcaagcgat
     3901 ggtattcttg cagaaattac ccaagaacaa ggtgctactg ttgtatccaa gcaatctctg
     3961 ggtaaattag tagtagctaa agccggtgat attagctctg caactattga gcaaaaaaca
     4021 gaatccacgc catcagaccg caaacacgca gcaattgaaa acagccacgc gaacgctgat
     4081 gatcaagggc ctgcgattcg ccgtttatta gccgaacacg acttacaagc cgctgatatt
     4141 caaggcagtg gtgtaggcgg cagaatcacc cgcgaagata ttgaaaaaga gattgccaaa
     4201 cgagtgcaaa tcaaccaagt aaaagggtct gcaaccagcc aaaacaccgt tagcactgta
     4261 gcatttaaca gccgtagcga aaaacgtgtg ccgatgacac gactccgcaa acgtattgcc
     4321 gaacgcttac tagaggcaaa aaacaccact gcaatgctca ctacttttaa cgagctggat
     4381 atgcaaccaa ttatgaattt acgcaaaacc tatggcgaaa aattcgaaaa acaacacggt
     4441 gtgcgtttag gctttatgtc gttctacatt aaagccgtgg ttgaagcatt aaaacgctac
     4501 cctgaaatca atgcctccat tgatggcgat gatgtggttt atcataacta tttcgacatc
     4561 agcattgcgg tttctacccc acgaggctta gtcacacctg tgttgcgtga ttgcgacaaa
     4621 atgagtatgg cagatattga gaagaaaatt aaagaacttg ccgaaaaagg gcgtgacggc
     4681 aaattaaccg ttgaagactt aaccggcggt aactttacca tcaccaacgg cggggtattc
     4741 ggttcattaa tgtccacccc aattatcaac ccgccacaaa gtgcgatttt gggtatgcac
     4801 gctattaaag accgccctgt cgccattgac ggacaagtag tgatccgccc gatgatgtac
     4861 ctagccttaa gctatgacca ccgtttaatt gacggtaaag aatctgtcgg tttcttagtg
     4921 gcagttaaag agttattaga agacccaacc cgtcttcttt tggaaattta atcgaaaata
     4981 tgaccgcttg tacttttagc tacaagcggt ctgtttttaa taaaatttga caaaatccga
     5041 taaacgctct atttgagttc ccttctgagc cacctgagcg actttgaatt tgtaggaaaa
     5101 atttagtgtt tgagcttaca aggcaagcga gttataaatt tttccgtcaa gcaaattcaa
     5161 actaagcgaa gaaagtggcg aagcagggtg tgctttcttt tggttacttt tctttgcaca
     5221 agcaaagaaa agtaacataa aaaaaaccaa acgaggaaac tctatgaatc tacacgaata
     5281 tcaagcaaaa caaatattca aacaatacgg gcttcccgta agccaaggga ttgcttgcaa
     5341 aacggcagag gaagccgttg aggcaattaa acaactacaa ggtgaacaat gggcgataaa
     5401 gtgccaagtt cacgctggtg ggcgtggcaa agccggcggg gtgaaactgg ttcgcaatga
     5461 agccgaagtg cgtgaatttg ccgataaatg gctcggcaaa cgcttagtta ccttccaaac
     5521 cgatgctaat gggcaaccgg ttaatacctt atatttagaa gaaacctgca atatcgaccg
     5581 tgaattgtac ttaggtgcag tggttgatcg ctccgctcaa aaagtgattt ttatggcatc
     5641 aagtgccggt ggtatgaata ttgaagaagt agcggagaaa acccctgaat taattcacaa
     5701 agcggtaatt gacccactca ccggtgggca gggttatcaa gggcgtgaat tagcatttaa
     5761 attaggcttg aaaggtgatg aagttaaaca atttgcggat attttcgtga aactggctaa
     5821 cctatttgtt gaaaaagatt tagctttatt agaggtaaat ccacttgtca tcactaaaga
     5881 agggcaacta ctctgcttag atgcaaaaat gtcgattgac agcaatgctc tctaccgcca
     5941 cccagaactt aaagagttgc aagacccatc gcaagatgac gaacgtgaag ctgaagcgga
     6001 aaaatggaat ctcaactacg ttgcactaga tggcaatatc ggctgtatgg taaacggtgc
     6061 ggggctggca atggggacga tggatatcgt caaactttat ggtggtaaac cggctaactt
     6121 cttagacgtt ggcggtggtg caaccaaaga gcgtgtagca gcagctttta aattgatttt
     6181 atctgatccg aatgtgaaag ccgtgttagt caatattttt ggtggtatcg tccgctgcga
     6241 tttgattgct gatggcgtca ttgctgctgt aaacgaagtc ggcgtgaatg tgcctgttat
     6301 tgtgcgttta gaaggcacta atgccgcaca ggggcgtgag attttagcca atagcgggct
     6361 gagtattcta gcggcatcat cattaaaaca agcggctgaa ttagcggtaa aatctgcaaa
     6421 ttaggaggaa aaatgtcgat tttaattgat aaaaacacaa aagtaatttg ccaaggtttc
     6481 accggcggac aaggtacttt ccacagcgaa caagcccttg cttatggcac acaattagtc
     6541 ggcggagttt cgccgaataa aggtggcaca acccatttag gcttaccggt tttcaacacc
     6601 gtacgcgaag cggtagaagc aaccggtgca actgcaaccg ttatctacgt tccggctccc
     6661 ggctgtaaag atgctatttt agaagccatt gatgccggca tccaactaat tgtctgtatt
     6721 actgaaggca ttccaacctt ggatatgcta caagttaaac aacgtctaaa ccaaaccggc
     6781 gtgcgaatga tcggtccgaa ctgcccgggt gtgattaccc ctgatgagtg caaaatcggc
     6841 attatgccgg gcaatatcca caaaaaaggc aatatcggta ttgtttctcg ttcgggtact
     6901 ttaacctatg aagcagttaa acaaacaact gacgaaggct ttggtcaatc tacttgtgtc
     6961 ggtatcggtg gtgatccgat tccgggatct aactttattg acattttaaa actgttccaa
     7021 gacgatcctg aaactgaagc aattgtgatg attggtgaaa tcggcggctc tgccgaagaa
     7081 gaagcggcag ctttcatcaa agaaaatgtc accaagcctg tagtcagcta tattgccggt
     7141 gtcaccgcac caaaaggcaa acgaatggga cacgccggtg cgattatcag cggcggcaaa
     7201 ggaaccgccg atgaaaaatt caaaatcctt gaagatgccg gtgtgacaac cgtcagaagt
     7261 ttagccgaaa tcggttcagc tcttagaaaa attttaggct aaactaaaag ttcaagcagt
     7321 catatttacc catttttttg taaatatgac cgcttgtttt tttgctatta aattactctt
     7381 tcgatttcca aattaatggg tcaacacctt tatggataag gtcttgatgt tcttcaattc
     7441 taaacactgg ctctttgcca cttttcactt ggcgaagata gtcttttaaa ataatccaga
     7501 caatcggagc aagaattaag atagccacca agttaattac cgccattgat gccatcactg
     7561 tatcggcaaa tgcccataca atccctccgt ctcttactgc accgaagtac acaaagaata
     7621 aaacgatggc acggaatccc cacacaaacc acggactgtt tttaatgtag cggatattag
     7681 tttctgcata agcatagtta ccgataatgg atgtgaagca aaacagtaaa atcacaaatg
     7741 ctaaaaagtg taaaccaaat tcacctaaat ggaattgtaa cgcactttga gtaagtgaaa
     7801 tacctcttaa agtttcacca ccatagttat ttgacataag aatgatcact gcagtacaag
     7861 tacagactac aattgtatct acaaatacgc ccaacatttg aattaagcct tgacttgccg
     7921 ggtgtttcgc atcagaagtc gctgcagaat ttggtgcaga tcccatacca gcttcgtttg
     7981 agaataagcc acgtttaatc cccattagca tagttttgga taccaatgct ccaaacgttc
     8041 cacctgcagc agcagaaaaa tcaaaggcgc tttcaataat taaagagatt atacttggca
     8101 ctttttcaat attcatacct aaaataatta ctgcaataat caagtagaat aatgccatca
     8161 ttggaacaac ttgggcagaa actttaccaa tacgcttgac ccctccagaa ataattaacc
     8221 ctgtaatcac cactaatgtc atgcctacgt agactgggtt ccaatcccac gcatttttgg
     8281 ttgcttccac aatagagtta gattgcacag cattaaaagc aaaaccaaag gtgaagataa
     8341 gcgtcactgc aaaagcaata gcaagagaag gcagttttaa accacgagtg atgtaatagg
     8401 ctggcccacc acgaaacatt ccgtttggat ctttggtttt atacaactga gccagtgaag
     8461 actcagcaaa ggcggaactc attcccatta aggcggtaat ccacatccag aataccgcac
     8521 ccggcccacc caaagcgatt gcagtagcta ccccaccaat attaccaacc ccaacacggc
     8581 tggctaatcc agtagtaaag gcttggaacg gagttaatga tttcccttcc gtagaacgtc
     8641 ctccccacat ttcacgtaaa ctttgcggaa gaagacgcag ctggacaaaa cctgttgtaa
     8701 gagtgaaaaa taaccctgca ccgagcaata ggataatcgt tacatcccaa agtggaccgt
     8761 cgattgtgtt cacaatccaa gtcagtacac t
//
LOCUS       DANLRW010000100         8775 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.101, whole genome shotgun sequence.
ACCESSION   DANLRW010000100 DANLRW010000000
VERSION     DANLRW010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8775
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.101"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..540
                     /locus_tag="PXA71_002029"
     CDS             <1..540
                     /locus_tag="PXA71_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5106107.1"
                     /translation="DIKSKNGKVAKQFCQRKNLPLYITEISKERIRRAGKQILQNNPE
                     NRPLDVGFKVFKLTESHFKQWQSPTSENLADQLEMFIDPVSEKADTQAVLYELLLRLG
                     LKLTAKVRLENKVFWVEENGLIFALLLNAADEEIIQTVIAQQPKKVIALDRLFNGNDA
                     RKKNTELQMQDAGITFFVI"
     gene            550..3186
                     /locus_tag="PXA71_002030"
     CDS             550..3186
                     /locus_tag="PXA71_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDL5106108.1"
                     /translation="MELQFETLEYQLQAVNATVNLFVGQPNAATEFSLKAQNDMRFVP
                     NLGLQISDEQLQQNLANLQNRQKIDRTLLVEQGKNFTVEMETGTGKTYVYLRTIFELN
                     RQYGWQKFVIVVPSVAIREGVLHTLETTKSHFNTVFDNPSVNQKFEYKSNQTSRLKSF
                     ASANHIEILVMNIDAFTKESNVINTVNESGDAPIFYIQQANPIVIIDEPQNMETEIRR
                     NAIESLSPLFTLRYSATHKNAYNPIFSLNPVQAYEMGLVKQIEVDSVLAENEVNGAYL
                     SLKEIKTGAKSWSAKIEILFNDKKAMKKKVISVKPNQDLYELSNQNEMYRSGFILSGM
                     DTDSQMVSFSNGTQIFQGAEHSQLKEDVQKMQIRRTIGEHLQKEKKLRPLGIKVLSLF
                     FIDKVDNYRPSAQSPTGGKFAKWFEEIYLELAKEEPQGVHNGYFSQDKKGVAKDTNGT
                     TQADNETYQLIMRDKEKLLSLENPLRFIFSHSALKEGWDNPNVFQICTLNDTASEMKK
                     RQEIGRGLRLPVNQQGLRIYDRHLNTLTIIANESYEQFAATLQREIEEDCGVQFAKSN
                     VKKREDKKAVRYRKDFSLHPEFAAIWERIKHQTTYRVDFSNAELIESAVEKIRKMPDI
                     EATKIKHSKVKLEMNETGISTNYRSSNETAVNTQWAIPDLLSEIQKKTGLTRATLCKI
                     LQKSDRLQEVFRNPQRFIDLIAEKINLALQQIMTDGVEYHKIAGKTYEMTLFGDFDFY
                     LNQYTFEVQDKTKTIYEDYIALDSQTENIFARHCESSEQVEFYFKLPKRFKIPTPLGS
                     YNPDWAVVFKGENKIYLVAETKNTGKGIQAGVDEEKLDESERMKIDYARKHFKGLQRD
                     YKDLDYRVVQKVEELSAEYCKI"
     gene            3318..5750
                     /gene="gyrB"
                     /locus_tag="PXA71_002031"
     CDS             3318..5750
                     /gene="gyrB"
                     /locus_tag="PXA71_002031"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDL5106109.1"
                     /translation="MSEQTQATSYDSSSIKVLRGLDAVRKRPGMYIGDTDDGTGLHHM
                     VFEVVDNAIDEALAGHCKDIIVTIHSDNSVSVQDDGRGIPVGIHPEEGVSAAEVIMTV
                     LHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQLTIRREGHVHEQFYSLGEPDAPLA
                     IIGNTEKTGTSVRFWPSLDIFKNKTEFEYKILSKRLRELSFLNSGVSIKLIDERDGKE
                     EHFKYEGGIKAYVEYLNEGKTHIHNTPFYLTTEKDGIGVEISLQWNDSYNENVYCFTN
                     NIPQRDGGTHLAGFRGALTRALKNYMDNSGVLKKADANIDASGDDAREGLVAVISVKV
                     PDPKFSSQTKDKLVSSEVRGAVESSMNEALSDYLAENPDDAKNIVTKIIDAARAREAA
                     RKAREMTRRKGALDLGGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKNQAI
                     LPLKGKILNVEKARFDKMLSSQEVATLITALGTGIGRDDYNLEKLRYHKIIIMTDADV
                     DGAHIRTLLLTFFYRQMPELIENGYIYIAQPPLYKVKKGKQERYIQDNDEMSQYEIDI
                     ALEGAGLYVSEDAPALSGVALENLIAQYNGVQKLIERLSRRYPTLLLNELIYSKPLSV
                     EFAKNQANMTAWSEQFVATLMAKEVGGSFYRINTLFNEERQIYEPEIIVTTHGMDSTY
                     RLDYNFINGNEYARIVALGNELNDLLSDSAYVVRGERRQEISSFAEALDWLVKESRKG
                     LTIQRYKGLGEMNPEQLWETTMDPVARKMLQVNITDAIAADKLFSTLMGDEVEPRRDF
                     IETNALYAQLDI"
     gene            complement(5803..6765)
                     /gene="cmoB"
                     /locus_tag="PXA71_002032"
     CDS             complement(5803..6765)
                     /gene="cmoB"
                     /locus_tag="PXA71_002032"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005707797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HDL5106110.1"
                     /translation="MIDFRPFYQQIATTDLSAWLETLPLQLKQWEKTTHADYAKWAKV
                     ADFLPNSTACINLKDKVESISSKPLSEGEVKQITHHLKQLMPWRKGPYHLHGIHIDTE
                     WRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEGAKMVVGIDPTELFLCQFE
                     AVRKLLGNDRRANLIPLGIEQMQPLAAFDTVFSMGVLYHRKSPLDHLSQLKAQLVRGG
                     ELVLETLVIDGDINDVLVPADRYAKMKNIYFIPSVAALINWLEKVGFKNVRCVDEAIT
                     TLEEQRKTDWLENESLVDFLDPNDHSKTIEGYPAPKRAVILANA"
     gene            complement(6862..8625)
                     /locus_tag="PXA71_002033"
     CDS             complement(6862..8625)
                     /locus_tag="PXA71_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     accessory protein YcaO"
                     /protein_id="HDL5106111.1"
                     /translation="MSEQTFITGKDAALEDSIATFQHKLKTLGFNIEEASWLNPVPNV
                     WSVHIRDADCPQCFSNGKGASKKAALASALGEYFERLSTNYFWADFYLGQEIANSEFV
                     HYPTEKWFPIDDEAIPPMEMMDEFLWEYFDPNGEITPELLVDLQSGNYDRGIVTLPYV
                     RQSDNETVYIPQSIIGNLFVSNGMSAGNTKNEARVQGLSEVFERFVKNRIITEAISLP
                     EIPQSVIDGYPTIKASIEKLEQEDFPILCYDASLGGEFPVICVILLNPNNGTCFASFG
                     AHPNFQVAFERTVTELLQGRSLKDLDVFAPPSFNNEDVADHANLETHFIDSSGLISWD
                     LFKRDADYPFVHWDFSGTTEQEFNNMMAIFNKHNQPVYIMDYEHLGVYACRILAPGMS
                     NIYPSDDLVYANNNMGMDWREILLDLPHFHHDAETYQELLDELDEQSIDDLTRVREFI
                     GVVAEKGSAMQTLRIGELKSMLHLALGNLEQASDWANWTANMNASVFSAERNNYYRCL
                     IQSIELFLDEERDSEQYRMVFEKMYGKQAVEAAWGAIQGGNPFHGLTASDESLENMTA
                     HQKLLNAYRKVQKAKVNPIAR"
BASE COUNT         2784 a         1700 c         1873 g         2418 t
ORIGIN      
        1 gatatcaaga gtaagaatgg aaaagtagca aagcaatttt gccaaagaaa aaatttacca
       61 ctatatataa ctgaaatttc aaaagaacgt attcgccgtg ccggaaagca gattttgcaa
      121 aataaccccg aaaaccgacc gcttgatgta ggttttaaag tcttcaaact gacagaaagc
      181 cattttaaac aatggcaatc gcccacatct gaaaatttag ccgatcaact tgaaatgttt
      241 attgatcctg ttagtgaaaa agcggatacg caagccgttt tatatgagct tttattgcgt
      301 ttagggttaa aactcacggc aaaagtgcgg ttggaaaata aggtgttttg ggtggaagaa
      361 aacgggctga ttttcgcctt gctgttaaat gcagccgacg aagaaattat tcaaactgtt
      421 atcgctcaac aaccgaaaaa agtcatcgct ttagaccgtt tattcaacgg caatgatgcc
      481 cggaagaaaa acaccgaatt gcaaatgcaa gatgccggca ttacgttttt tgtgatttaa
      541 ggagaaaaaa tggaactcca atttgaaacc ttagagtatc aattacaagc cgttaatgcc
      601 acagtaaatt tgtttgtcgg acagccgaat gccgcaactg aattttcact caaagcccaa
      661 aatgatatgc ggtttgtgcc gaatttaggc ttgcagatta gtgatgagca gttacaacag
      721 aatttggcta atctgcaaaa caggcaaaaa atcgaccgca ctttgcttgt cgaacaggga
      781 aaaaatttta ccgtggaaat ggaaactggt acagggaaaa cctatgtcta tttacgcacg
      841 atttttgaat taaaccgtca atacggctgg caaaaatttg tgattgtcgt gccgagtgtg
      901 gcaattcgtg agggagtgtt gcatacgttg gaaactacaa aaagccattt taatacggta
      961 tttgataacc cgagcgtcaa tcaaaaattt gaatataaaa gtaaccaaac ttcacgctta
     1021 aaatcctttg ctagtgctaa tcatattgaa attttagtga tgaatattga tgctttcacc
     1081 aaagaaagta acgtgattaa taccgtgaat gaaagcggtg atgctccgat tttctatatt
     1141 caacaggcga atccgattgt gattattgat gaaccgcaaa atatggaaac ggagattcgc
     1201 cgtaatgcga ttgagagttt aagtccgctt ttcactttgc gttattctgc cacccataaa
     1261 aatgcgtata acccgatttt tagcctcaat ccggtgcaag cctatgaaat gggattagtt
     1321 aaacaaattg aggtagatag cgtattggcg gaaaatgagg taaatggagc ttatctttcc
     1381 ctcaaagaga ttaaaacagg ggcaaaaagc tggtcggcaa aaatcgaaat tttatttaac
     1441 gataaaaaag cgatgaaaaa gaaagtgatt agcgtgaaac cgaatcagga tttgtatgag
     1501 ctttccaacc aaaatgaaat gtatcgttca gggtttatat taagcggaat ggataccgat
     1561 agccaaatgg ttagcttctc caacggcaca caaatttttc aaggggcgga acattcccaa
     1621 cttaaagaag atgtgcaaaa aatgcagatt cgccgcacta ttggcgagca tttgcaaaaa
     1681 gaaaagaaat tacgaccgct tgggatcaag gtgttgtctt tgttctttat cgataaagtg
     1741 gataattatc gcccttctgc acaaagccct acggggggaa aatttgcaaa atggtttgag
     1801 gaaatttatt tggagctagc caaagaagag cctcaaggcg tgcataacgg ttatttctca
     1861 caggataaaa aaggcgtagc aaaagatact aatggcacaa cgcaagcgga taacgagact
     1921 tatcaactga ttatgcggga taaagaaaaa ttgctttcgc tggagaatcc gttacggttt
     1981 attttctcgc attctgcctt aaaagaagga tgggataatc cgaatgtgtt tcaaatttgt
     2041 actttaaacg atactgcaag cgaaatgaaa aaacgccaag agattgggcg gggcttgcgt
     2101 ttgcctgtga atcaacaagg attgcggatt tatgatcgtc atctaaatac gctgacaatt
     2161 atcgcaaatg aaagttacga acaatttgcc gccacattac agcgtgaaat tgaggaagat
     2221 tgtggtgtac agtttgccaa aagcaatgtt aaaaaacggg aagataaaaa agccgttcgc
     2281 taccgtaaag atttcagctt acatccggaa tttgcggcaa tttgggaacg gattaaacac
     2341 caaaccactt atcgggtaga tttcagtaat gcggaattga ttgaaagtgc ggtggaaaaa
     2401 atccgcaaaa tgcccgatat cgaggcgaca aaaattaagc attccaaagt gaaattggaa
     2461 atgaatgaaa cagggatttc aactaattat cgctcatcta atgaaacagc ggtaaataca
     2521 caatgggcga tacctgattt attgagtgag attcaaaaga aaaccgggct gacgcgtgcg
     2581 accctttgca aaattttaca aaaatccgac cgcttgcaag aagtcttccg caatcctcaa
     2641 cgctttattg atttaattgc agagaaaatc aaccttgctt tacaacaaat tatgacagac
     2701 ggggtggaat atcacaaaat tgccggaaaa acctatgaaa tgacgttatt cggcgatttt
     2761 gatttttacc tcaatcaata tacttttgaa gttcaagata aaacaaaaac gatttatgaa
     2821 gactatattg cactggattc ccaaacagaa aatatcttcg cccgacattg tgaatctagt
     2881 gagcaagtgg agttttattt taaattaccc aaacgtttta aaattccaac gccattaggc
     2941 agctataatc ccgattgggc agttgtgttt aagggagaaa ataaaattta cttggttgcc
     3001 gaaacgaaaa atacaggcaa aggtattcaa gcaggagtag atgaagaaaa attagatgaa
     3061 agtgaacgaa tgaaaatcga ctatgcccgt aagcatttca aaggcttaca gagagattat
     3121 aaggatttgg attatagggt tgtacagaaa gtggaggagc tgtctgcgga gtattgtaaa
     3181 atttaatctg tggtcttgta gaattgagat agactgcaat ttcaactaaa atttaaccgc
     3241 ttgttttgcg atacttttac gcatttttct gctataatcg gcacaatttt ttcgatttca
     3301 aattagtagg aataagaatg tctgaacaaa ctcaagcaac aagttatgat tcttccagta
     3361 ttaaggtgtt acgcggctta gatgcggtgc gtaaacgccc gggaatgtat atcggcgata
     3421 ccgatgacgg tacgggctta caccatatgg tgtttgaggt ggttgataat gcgattgacg
     3481 aagcattagc cgggcattgt aaagacatta ttgtcacaat tcattccgat aattcggttt
     3541 ctgtgcaaga tgacggtcgt ggaattccgg tggggattca cccggaagaa ggcgtttcgg
     3601 cagcagaagt cattatgact gttcttcacg caggcggtaa atttgacgat aactcctata
     3661 aggtttccgg cggtttgcac ggtgtgggcg tatcggtggt gaatgcactt tcctctaaat
     3721 tacaactcac tattcgccgt gaaggacacg ttcacgagca attctatagc ttaggtgagc
     3781 ctgatgcacc tttagcgatt atcggcaata ccgaaaaaac ggggacgtcg gttcgtttct
     3841 ggccaagttt ggatattttc aaaaataaaa ccgaatttga atataaaatt ctgtctaaac
     3901 gcttgcgtga actatcattt ttgaattcag gcgtttcgat taaattaatt gatgaacgag
     3961 acggcaaaga agagcatttt aaatatgagg gcggtattaa agcctatgtt gagtatttaa
     4021 acgaaggcaa aactcatatt cacaatacgc cattctattt gaccactgag aaagacggca
     4081 ttggcgtgga aatttcccta cagtggaatg acagttacaa cgaaaatgtg tactgcttta
     4141 ccaataatat tccacagcgt gatggcggta cgcacttagc cggtttccgt ggggcattaa
     4201 ctcgtgcgtt gaaaaactat atggataaca gcggggtatt gaaaaaagcc gatgcgaaca
     4261 ttgatgcctc aggtgatgat gcccgtgaag gtttagtagc ggtgatttcg gtgaaagtgc
     4321 cggatccgaa attctcctca caaaccaaag ataaattggt gtcgtcagaa gtgcgtggag
     4381 cagtggaaag ctcaatgaat gaggctttat ccgactattt agccgaaaat ccggacgatg
     4441 caaaaaatat cgttaccaaa attattgatg cagcccgtgc aagagaagca gctcgtaaag
     4501 cccgtgaaat gacccgccgt aaaggggcgt tagatttagg cggcttaccg ggtaaattag
     4561 ctgattgtca ggaaaaagat ccggcgttat cggagcttta cttggtggag ggtgactctg
     4621 ccggtggctc ggcaaaacaa gggcgtgacc gtaaaaacca agcgattttg ccgttaaaag
     4681 ggaaaattct gaacgtggaa aaagcccgct ttgataaaat gctttcttca caagaagtag
     4741 caaccttgat taccgcttta ggcacaggca tcgggcgtga tgattataat ttggaaaaat
     4801 tacgttacca caaaatcatt attatgaccg atgcggacgt ggatggtgca catattcgta
     4861 cgcttttatt aactttcttc taccgtcaaa tgccggagct gattgaaaac ggctatattt
     4921 atattgcaca gccaccgctt tataaagtga aaaaaggcaa gcaagagcgt tatattcaag
     4981 ataacgatga aatgtcgcaa tatgaaattg atattgcatt agaaggtgca ggcttatatg
     5041 tgagtgaaga tgctccagcg ttaagtggcg tagcgttaga gaacttaatt gcccaatata
     5101 acggcgtaca aaaattaatt gaacgtttaa gccgtcgtta cccaacatta ttacttaacg
     5161 aattaattta ttcaaaaccg ctttcggtgg aatttgcaaa aaatcaagca aatatgaccg
     5221 cttggagcga gcaatttgtc gctacattga tggcaaaaga ggtgggcggc agtttctacc
     5281 gtattaatac cttgttcaat gaagaacgcc aaatttatga gccggaaatt attgtgacta
     5341 cacacggtat ggacagtacc tatcgtttag attacaactt tatcaacggt aatgaatacg
     5401 ctcgcattgt ggcattaggc aacgagctga acgatttact atctgattca gcctatgtgg
     5461 tgcgtggtga acgtcgccaa gaaatcagca gttttgctga agccttagat tggttggtga
     5521 aagaatctcg taaaggctta actattcaac gttataaagg gttaggtgag atgaatccgg
     5581 aacaattatg ggaaaccacg atggatccgg tggctcgtaa aatgctacag gtcaatatta
     5641 ccgatgcgat tgcggcagat aaactcttca gtacgctgat gggcgatgaa gttgaaccac
     5701 gccgagattt cattgaaact aacgctttgt atgctcagtt agatatttag ttaaaaaatc
     5761 cgcatttgac atgcggattt tttattctct taaactagca ttttaagcat tcgctaaaat
     5821 caccgcccgc ttcggagcag ggtagccttc aatggttttg ctatgatcgt ttggatctaa
     5881 aaaatccact aaactttcat tttccaacca atcggttttt cgctgctctt ctagtgtagt
     5941 gattgcctca tcaacacaac gcacattttt aaagccgact ttttccagcc aattaatgag
     6001 tgcagcaaca gaaggaataa aatagatatt tttcattttc gcatagcgat cagccggcac
     6061 taaaacatca ttaatatcgc catcaatcac cagcgtttct aacaccaatt caccgcctct
     6121 gactaattgg gctttgagtt gagaaagatg atcaagcggt gatttgcgat gataaagcac
     6181 ccccattgaa aacacggtat caaaagcagc aagcggttgc atttgctcaa taccaagtgg
     6241 aatcagatta gcccgtctat cattccctaa gagtttccgc actgcctcaa attggcacag
     6301 gaacagctcg gtcgggtcaa taccaactac catttttgcc ccttcgccta ccattcgcca
     6361 catatgataa ccgctaccgc agccgacatc taaaatggtg cggtctttta acggtgcaag
     6421 atgcggaagc acacgatccc atttaaaatc ggaacgccat tcggtatcaa tatgaatccc
     6481 gtgtagatga taagggcctt tacgccacgg cattagttgc tttaaatggt gggtaatttg
     6541 cttgacttcc ccctcagata aaggcttgct tgaaatagac tcaaccttgt cttttagatt
     6601 gatacaagcg gtcgaatttg gtaaaaaatc tgcaactttt gcccacttgg catagtcagc
     6661 gtgggtggtc ttttcccatt gtttgagttg taagggtaag gtttctaacc aagcagaaag
     6721 gtcggttgtg gcaatttgtt gataaaaagg acgaaagtca atcattttga aatttatgtc
     6781 taggggagag acctatgccc tcccgaaagg tagtaaatag aaaggacagg cacagaacct
     6841 acccctacga aaaatataaa attatctcgc aatcggattt actttcgctt tttgcacttt
     6901 gcgataagcg ttcagtaatt tctgatgtgc agtcatattt tcaagcgatt cgtccgatgc
     6961 agttaaaccg tggaacgggt taccgccttg gattgcaccc caagcagctt caaccgcttg
     7021 tttaccgtac attttctcaa acaccatacg atattgttcc gaatcacgct cttcatctaa
     7081 gaacaactca atcgattgga ttaagcagcg gtaataattg ttacgttctg ctgagaatac
     7141 gcttgcattc atattcgctg tccagtttgc ccagtctgag gcttgctcta agttacctaa
     7201 agctaaatgc agcatcgatt taagctcacc gatacgcaat gtttgcattg cagagccttt
     7261 ctctgccacc acgccaataa attcacgcac acgggttaaa tcatcaatgc tttgctcatc
     7321 taattcatca agcagttctt ggtaagtttc agcatcgtga tggaaatgtg gcaaatctaa
     7381 caagatttca cgccaatcca tacccatatt gttattggca tagaccaaat catcgcttgg
     7441 atagatattc gacatacccg gtgcaagaat acggcaagcg tacacaccta aatgctcata
     7501 atccataata tacacaggct gattatgctt gttgaaaatc gccatcatat tattaaattc
     7561 ttgctccgtt gtgccggaga agtcccaatg cacgaacgga taatccgcat cacgtttgaa
     7621 aagatcccac gaaattagac cgcttgaatc aataaagtgt gtctcaaggt tcgcatgatc
     7681 tgctacatct tcattattaa atgaaggtgg ggcaaacaca tctaaatcct ttaagctacg
     7741 gccttgtaat aactcggtta cggtacgttc aaacgccact tggaaattcg ggtgtgcacc
     7801 aaaagaggca aaacaagtac cgttatttgg gtttaacaag atcacacaaa taactggaaa
     7861 ttctccgcct aatgaagcgt catagcataa aatcgggaag tcttcttgct ctagtttctc
     7921 gatagaggct ttgattgtcg gataaccgtc aatcacactt tgcggaattt ccggcaagct
     7981 gattgcctca gtaataatac ggtttttgac aaaacgctcg aacacttcgg ataagccctg
     8041 cactcgagct tcattttttg tgttgcctgc cgacataccg tttgaaacaa acaggttgcc
     8101 gataatgctt tgcggaatgt aaaccgtttc attgtcagat tggcgaacgt aaggtagggt
     8161 aacaattcca cgatcataat ttcctgattg taaatcaacc aataattccg gcgtgatttc
     8221 accattcgga tcaaaatatt cccataaaaa ctcgtccatc atctccattg gtggaatggc
     8281 ttcatcatca atcggaaacc atttttcggt tggataatgc acaaattcac tattagcaat
     8341 ctcttgacct aaataaaaat ccgcccagaa atagttggta gataaacgct caaaatactc
     8401 acctaatgca gaggcaagag cggctttttt gcttgctccc ttaccgttag aaaaacattg
     8461 cggacagtct gcatcacgaa tatgcaccga ccacacattc ggaacaggat ttaaccaaga
     8521 ggcttcttca atattaaaac ctaaggtttt taatttatgc tgaaaggtcg caatgctgtc
     8581 ttcaagtgca gcatctttac cggtaataaa agtttgttct gacatgataa tacctttaac
     8641 ttgtcgtaaa aatggcaaca ttctagcaaa aatccccata gataagtaaa ttttttgtga
     8701 aatttctgct gaaagaacag atttcaaaac ttagaaaaaa tgattacaag cggtcaaatt
     8761 ttacttgaat tttgc
//
LOCUS       DANLRW010000101         8695 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.102, whole genome shotgun sequence.
ACCESSION   DANLRW010000101 DANLRW010000000
VERSION     DANLRW010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8695
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.102"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            43..312
                     /locus_tag="PXA71_002034"
     CDS             43..312
                     /locus_tag="PXA71_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDL5106112.1"
                     /translation="MKIMAVCGSGLGSSFMMEMNIKKVLAKLGVEAEVSHTDLSSVVA
                     DDADLFVMAKDIAASSNVPKEKLIVVKNIVGLAEFEEKLTAYFNQ"
     gene            325..1675
                     /locus_tag="PXA71_002035"
                     /pseudo
     CDS             325..1675
                     /locus_tag="PXA71_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013745980.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
     gene            complement(1770..2918)
                     /gene="dprA"
                     /locus_tag="PXA71_002036"
     CDS             complement(1770..2918)
                     /gene="dprA"
                     /locus_tag="PXA71_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDL5106113.1"
                     /translation="MAYHYDLLRLLQVPQMGAQRIGRLLAELNFAEFCHYDKLQLKQI
                     GWNEKQIQRWFNPDQKWIDQAMTWSELPNQQIVTLFDENYPFLLKQISTAPPLIYVKG
                     NVESLSLPQIAIVGSRDYSHYGEYWAGQFAAELARHNIIITSGLAIGIDGFAHQKIVM
                     EQGITIAVLGSGLNQVYPARHKKLAEQIVDLGGALVSEFSPNQPPVAENFPRRNRIIS
                     GLSLGTLVIEATLNSGSLITARYALEQGREVFALPNAVQNPYAQGCHKLIKEGALLVE
                     GVEDILEVVASQYQPQQIPLFDESKPTVSTSLQAVKNSEKFAKNLPSLTACQQQIYQH
                     ISLEPMAIDDLAKVTELTIEILLVELLGLELAGVIKQVSGGYVMDNGY"
     gene            3007..3519
                     /gene="def"
                     /locus_tag="PXA71_002037"
     CDS             3007..3519
                     /gene="def"
                     /locus_tag="PXA71_002037"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005621146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDL5106114.1"
                     /translation="MAILDVVLYPDEKLATVCEPVEQVDEALNRFIDDMFETMYEHEG
                     IGLAAPQVGVLKRVITIDIEGDKTNQVVLINPEILESSGETGIEEGCLSIPGHRALVP
                     RKEKVKVKALNRQGEEIIIDADDLFAICIQHEIDHLNGVLFVDHISNLKRQRIKEKMQ
                     KLKKQIARAK"
     gene            3613..4539
                     /gene="rfaD"
                     /locus_tag="PXA71_002038"
     CDS             3613..4539
                     /gene="rfaD"
                     /locus_tag="PXA71_002038"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HDL5106115.1"
                     /translation="MIIVTGGAGMIGSNIVKALNEIGRKDILVVDNLKNGEKFINLVD
                     LDIADYCDKEDFIASIIAGDDFGEIDAVFHQGACSATTEWDGKYLMQNNYEYSKELLH
                     FCLDRQIPFFYASSAATYGGRSDNFIEKREFEGPLNAYGYSKFLFDEYVRRILPEAES
                     PVCGFKYFNVYGPREQHKGSMASVAFHLNNQMLKGENPKLFAGSEQFLRDFVYVEDVA
                     KVNLWAWQNSISGIFNLGTGKAESFQEVANAVIKYHGKGEIETIPFPDHLKSRYQTFT
                     QADLTNLRAAGYTGTFKTVAEGTAEYMAWLNR"
     gene            complement(4607..5137)
                     /gene="fabA"
                     /locus_tag="PXA71_002039"
     CDS             complement(4607..5137)
                     /gene="fabA"
                     /locus_tag="PXA71_002039"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017807287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HDL5106116.1"
                     /translation="MNSCTPIIKPSYTYEELLLSGKGELFGEKGPQLPAPPMLMMDRI
                     IEMNQEKGNFEKGYIEAEFDIKPDLWFFNCHFINDPVMPGCLGLDAMWQLVGFYLGWI
                     GGEGKGRALGVGEVKFTGQILPTAKKVTYRIHMKRVVNRKLVMGVADGEVEVDGRVIY
                     TATDLKVGLFQDTTAF"
     gene            complement(5250..6887)
                     /locus_tag="PXA71_002040"
     CDS             complement(5250..6887)
                     /locus_tag="PXA71_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5106117.1"
                     /translation="MTLSLLSSQKLVMQNDFSRLDEKLNFLDFQPQAKQALNQFLQSQ
                     FGALLVLKSELFPEFINEITEYLKKYSVDLPIISKMDFNKNSLFGYSVFLERELKTEY
                     VKGAIHEADKGILIVNIRSLLLDITQWDKLKQALLFGEYEPNSVNHSPYLSAKEKSTF
                     KLILVGEREDISTLSAYDDGLYQFGQYTEIKSYLSLSDNVEQWGGYVQNYAENLINKR
                     LTSTALNQFLQAYIRESESRELVSISPTLLRKHLLGIQNFYPNVTEIDEVKGYFDYLE
                     QQSSILNQYTVGDILTNQLYIETEGEEIGQINGLSVIEFEGIPHSFGEPLRMSCNVQY
                     GDGEITDIERKVELGGNIHSKGIIIAQSCLANLLELPTQLPFSASIAFEQSYGEIDGD
                     SSSLAIFNVLVSALAKVGLPQSIAVTGAIDQFGNVLSVGGVNQKIEGFFNICHARQLT
                     GKQGVIIPAACVSHLSLSSEVVEAVEQGLFKIWTVENVFDAIAILFERDFYDDEKAPN
                     SAQTALFTLIHQNLDERESEETSGSFLSKICKKIKLD"
     gene            6980..7426
                     /gene="matP"
                     /locus_tag="PXA71_002041"
     CDS             6980..7426
                     /gene="matP"
                     /locus_tag="PXA71_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HDL5106118.1"
                     /translation="MRYQKLITQETTWKWQYLLKKHREGENITKYEEQSLIDLKVQFL
                     STLQNSPDEVEKWIKSEMTPEQRKKMRQSVRAKRKRFFNAEKQTTKKKSIDLEYSSWL
                     RLSKYAKSQKLTLSEAIVKLTDELENKQLYLEQVAKMKSSLKDLLK"
     gene            complement(7492..8628)
                     /gene="ompA"
                     /locus_tag="PXA71_002042"
     CDS             complement(7492..8628)
                     /gene="ompA"
                     /locus_tag="PXA71_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_119863613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HDL5106119.1"
                     /translation="MKKTLVALAVLSAAAVAQAAPQANTFYAGAKAGWASFHDGLTQF
                     DNTYDYGSGINLGINLGINRNSVTYGVFGGYQILNQNNFGLATELGYDYFGRVRGNTT
                     FSGDDKEKTAAKHSAHGAHLSLKPSYEVVPNLDVYGKVGVALVRNDYYVQQHVDKDSR
                     IKVHNLKPSLLLGAGLEYAITPELAARVEYQYLNRVGNLDKAVRTTVGYLIPRGTNFQ
                     YSPDIHSVSAGLSYRFGQGAAPVEAPEVVTKNFAFSSDVLFDFGKSSLKPAAATSLDA
                     AHAEISNLGLANLAIQVNGYTDRIGKEASNLKLSQRRAETVANYIVSKGTNPANVTAV
                     GYGEANPVTGHTCDAVKGRKALIACLAPDRRVEIQVQGSKEVTM"
BASE COUNT         2625 a         1796 c         1654 g         2620 t
ORIGIN      
        1 aaattcagac aactattcat tcacctttaa tggagattta ctatgaaaat tatggcagta
       61 tgtggttccg gcttaggtag cagctttatg atggaaatga acattaaaaa agtattggca
      121 aaactcggtg tcgaagcgga agtgagtcat accgaccttt cctctgttgt tgctgatgat
      181 gctgatttat ttgtgatggc aaaagatatt gccgcaagca gcaatgtgcc gaaagaaaaa
      241 ctcatcgtgg taaaaaacat tgttggatta gcagaattcg aagaaaaatt gaccgcttac
      301 tttaaccaat aacggagatg ttatatggaa tcgctactct tttttatatt agatattctc
      361 aaagtgcctt ccgttctagt gggtttaatt gctctggtcg gtttagttgc acagaaaaaa
      421 tcggtatccg atattgttaa aggaacaatc aaaactattt taggcttctt agtgttaagc
      481 ggtggtgcaa cagtactttt aagctccctg actcctttag gcggtatgtt tgaacacgcc
      541 ttcaacgtgc aaggcattat ccctaataac gaagcgattg tgtctatggc aatcgaaaaa
      601 tatggtacgg cgactgcgtt aattatggca ttcggtatgg tagccaatat tttaattgca
      661 cgttttaccc gcctaaaatt cattttctta accggacacc ataccttcta tatggcgtgt
      721 atgatcggcg taatcctaac cgttgccggc tttgaaggta ttcagctcgt ctttgtcggg
      781 gcattaacct tagggttaat tatgtttccc gactatcgct cacttctata tgaaaaaagt
      841 gaccgctagc aatgatgttg ccttaggtca tttcggcaca ttgggctacg tgcttgctgg
      901 ttcaatcggg caactggtag gaaaaggctc taaatctacc gaagaaatgg atttacctaa
      961 aaacctcggc ttcttacgtg atagctccat ttctatttca ctcacgatga tggcgattta
     1021 ctatattctc gcccttgctt cgggcagtga atacgtttct acattaagcg gcggacaaca
     1081 ttatttagtg tatgccacca ttcaagccat cacttttgca gccggtgttt atgtcatttt
     1141 gcaaggggtt cgtttaattt tagccgagat cgtcccggca tttaccggct tctccgaaaa
     1201 attagtacct gatgccaaac cggctctcga ctgcccgatt gttttccctt acgcccccaa
     1261 tgcggtatta gttggatttc ttgccagttt cttaggtggg attttaagct tagccattct
     1321 agggcaactt aattgggtgt taattttacc gggcgtagtg ccacacttct tctgtggggc
     1381 aactgccggc gtatttggga acgccaccgg cgggcgtcgt ggtgcaatta tcggtgcttt
     1441 tattcacggc atattaatta ccttcttgcc tgtattctta ttacctgtac tgggttcatt
     1501 aggctttgct aacaccactt tctctgactc agacttcggc ggtattggga ttgtgttagg
     1561 ctatatggct caatacttcg acaagaatat cattacgctc attattgtcg gcttattcgc
     1621 tctgttggta gcctataatt atttggcgaa aaaaccggca aaactgaata cctaattaaa
     1681 atcaggtgtt atttgctgcc tgcgaggaat cttccctgcc atttcttgat ggtagggaat
     1741 tttgtttagt taaacgacaa cgctcttgtt caatacccat tatccatcac atacccccca
     1801 ctcacttgtt taatcacacc ggctaattcc agacccagta attcaaccag caatatttca
     1861 atcgtcaact ccgtaacttt ggctaaatca tcaattgcca tcggctctaa gctgatatgc
     1921 tgataaattt gctgctggca agcggtcaga cttggcagat tttttgcgaa tttttcgctg
     1981 tttttgaccg cttgtaaaga tgtgcttact gttggcttag actcatcaaa caaagggatt
     2041 tgctgaggtt gatattgcga ggcgaccacc tctaaaatat cttccacacc ttccacgagc
     2101 aatgcccctt ctttaattag cttgtggcaa ccttgtgcgt aagggttttg taccgcattc
     2161 ggtaacgcaa acacttccct accttgttca agggcataac gagcggtaat cagtgaacca
     2221 ctattaagcg ttgcttcaat aactaaagtg ccgagcgata agccactaat aattcgatta
     2281 cgacgaggaa aattttctgc caccggcggc tgattaggcg agaactccga caccaatgca
     2341 ccacctaaat caacaatttg ttcggctaat tttttatggc gagcaggata gacttgattt
     2401 aatccactcc ctaacacggc aatcgttatg ccttgttcca taacgatttt ttgatgggca
     2461 aaaccgtcaa taccaatggc taaaccgctg gtaatgataa tattatggcg agctaattcg
     2521 gcagcaaatt gcccagccca atattcacca taatgagaat agtctcggct gccaacaatc
     2581 gcaatttgtg gcagagaaag gctttccaca tttcccttta cataaattaa cggtggcgca
     2641 gtcgaaattt gttttaagag aaacggataa ttttcatcaa agagtgtcac aatttgctga
     2701 tttggcaatt ctgaccaagt catcgcctga tcaatccact tttgatcagg attaaaccaa
     2761 cgttgaattt gcttttcatt ccaacctatt tgtttgagtt gaagtttgtc atagtggcaa
     2821 aattcagcaa aattgagttc cgccaataat cgccctatac gttgagcccc catttgcggc
     2881 acttgtaata atcgtaataa atcgtagtga tatgccatat tttcatcctc aaaatttccc
     2941 taataataag aaaaggttta aaatagccaa acgaattttt taaacttttc gagagagatc
     3001 acaaaaatgg caatattaga tgttgtgctt taccccgatg agaaactggc aaccgtttgt
     3061 gaaccggtgg aacaggtgga cgaagcactg aatcgtttta tcgatgatat gtttgagaca
     3121 atgtacgaac acgaaggtat tggcttagct gcaccgcaag tgggcgtact taagcgtgtt
     3181 attactattg atattgaggg cgacaaaacc aatcaagtgg tgttaattaa ccctgaaatt
     3241 ttagaaagca gcggtgaaac cggcattgaa gagggctgtc tctccattcc cgggcatcgt
     3301 gccttagtgc cacgcaaaga gaaagtgaaa gtcaaagccc ttaaccgcca aggcgaagaa
     3361 attatcatcg atgccgatga tttatttgcg atttgtattc aacacgaaat cgaccattta
     3421 aacggcgtgc tttttgttga ccacatatcc aatttaaaac gccaacgcat caaagaaaaa
     3481 atgcaaaaat tgaaaaagca aattgcacga gcgaaataac caggcacaag cggttaaaat
     3541 ggcttaaaaa tttgcaaatt aagtgtgatg acacgataat aaccacagtt caactttaga
     3601 aaggataaaa atatgattat cgtcaccggc ggcgcaggta tgattggcag taacattgtt
     3661 aaagccttaa atgaaatcgg tcgcaaagat attttagtag tagataacct caaaaacggg
     3721 gaaaaattta tcaacttagt ggacttagat attgcggatt attgcgataa agaggatttc
     3781 atcgcctcta ttatcgccgg cgatgatttt ggtgagattg atgcggtttt ccatcaaggg
     3841 gcttgctcgg caaccaccga atgggacggc aaatacttaa tgcaaaataa ctacgaatat
     3901 tcaaaagagt tattgcattt ttgcttagat cgccaaattc ctttcttcta tgcctcaagt
     3961 gcggcaacct atggcggacg ttcggataat tttatcgaga aacgggagtt tgaaggtcca
     4021 ttaaatgctt atggctactc caaattcctg tttgatgaat atgtccgccg tattttgcct
     4081 gaggcagaat caccggtctg tggtttcaaa tatttcaacg tatacgggcc tcgtgagcaa
     4141 cacaaaggtt caatggcaag cgtggcattc cacttaaaca accagatgtt aaaaggggaa
     4201 aatccaaaac tatttgccgg ctcagagcag ttcttgcgtg attttgttta tgtggaagat
     4261 gtggcaaaag tgaatctttg ggcgtggcaa aacagcattt ctggcatttt caacctcggc
     4321 accggaaaag cggaatcttt ccaagaagtt gcgaatgcgg ttatcaaata ccacggcaaa
     4381 ggcgaaattg aaaccatccc attcccggat catttaaaat cccgctacca aacgttcact
     4441 caagcggact taaccaacct aagagccgct ggctacacag gcacatttaa aaccgttgct
     4501 gaaggaacag cggaatatat ggcgtggttg aatcgctaat caaacgttgt taaaaaagca
     4561 gaaagagcta cgaaatgtag ctctttttgt tataaggtta taaggattag aatgctgtcg
     4621 tatcttggaa taagcctact tttaaatcag tagcagtata gatcactcgc ccgtccactt
     4681 cgacttcacc atcagcaacc cccatcacta acttacgatt gaccacacgt ttcatatgga
     4741 tacggtaagt aacttttttc gctgtcggta aaatttgtcc ggtgaatttt acttcaccta
     4801 cgcccaatgc acgccctttg ccttcgccac caatccagcc gagataaaaa ccaaccagtt
     4861 gccacatcgc atctaagcct aagcaacccg gcattacagg atcgttaata aaatggcagt
     4921 taaaaaacca taaatccggt ttaatatcaa actcagcttc aatataccct ttttcaaaat
     4981 tgcctttttc ttggttcatt tcaatgatgc gatccatcat taacatcggt ggagccggca
     5041 attgaggccc tttttcaccg aataattctc cttttcctga tagcaaaagc tcttcgtaag
     5101 tatagcttgg tttgataatt ggtgtacaac tgttcattat ttttaaaatc ctgtaaagtg
     5161 aaaaaagcct gttatatcaa taactgataa atcaggctga tagtaacaga cttttaattc
     5221 agtgaacagt tgtaagctga cttgtcggat cagtctagct ttatcttttt gcaaattttg
     5281 cttaaaaatg aaccgcttgt ttcttcactt tcccgctcat ctagattctg gtgaatcaag
     5341 gtaaataatg ctgtttgggc tgagttaggg gctttctcat catcataaaa atcccgctca
     5401 aacagaatcg ctatggcatc aaacacattt tccaccgtcc aaattttaaa tagaccttgc
     5461 tccactgcct caacaacttc tgaacttaaa ctcaaatggc taacacaggc cgccggaata
     5521 atcacacctt gtttccccgt taattggcga gcgtgacaaa tattaaagaa gccttcaatt
     5581 ttctgattta ccccgcccac gcttagcaca ttcccaaatt gatcgatagc acctgtcacc
     5641 gcaatagatt gtggcaagcc aactttagct aaggcactca ctagtacatt gaaaatcgca
     5701 agagaagaac tatccccatc aatttcacca taggattgtt caaaagcaat cgaagctgaa
     5761 aacggtaact gggttggtag ttctaacaga ttcgctaaac aagattgagc gataataata
     5821 cctttggagt ggatatttcc ccctagctcc actttacgct caatatctgt aatttcgcca
     5881 tcaccatatt gtacattaca actcatgcgt aagggctcgc caaaactatg cggaatgcct
     5941 tcaaactcaa tgaccgataa gccattgatc tgcccaattt cctctccttc ggtttcaata
     6001 taaagttgat tagtcagaat atcacccacc gtatattgat ttaatatcga tgattgctgt
     6061 tctaaataat caaaataacc ttttacctcg tcaatttcgg tcacatttgg gtaaaaattt
     6121 tgaattccta ataaatgttt tctcaataat gtaggggaaa tagacaccaa ctctcggctt
     6181 tcactttcac gtatataggc ctgtaaaaat tgattaagcg ctgtggaagt taatcgctta
     6241 ttgatgagat tctcagcata attctgaaca taacctcccc actgctccac attatccgat
     6301 aatgataagt aggattttat ttcggtatat tgcccaaatt ggtacaaccc atcatcataa
     6361 gcagataaag tagaaatatc ttctctttcc cctactaaaa tcaatttaaa tgttgatttc
     6421 tctttagccg ataaataggg tgagtgatta acagaatttg gctcatattc accaaataat
     6481 aatgcctgtt ttagcttatc ccattgggta atatccaata agagcgaacg gatattaaca
     6541 attaaaattc ccttatctgc ctcgtgaatt gcacctttaa catattctgt tttcagctct
     6601 ctttccaaaa acacagaata accaaataga ctatttttat tgaaatccat tttgctaata
     6661 atcggcagat ctacactata ttttttcaga tattccgtga tttcattgat aaattccgga
     6721 aaaagctcag attttaagac taataaagca ccaaactgag attgtaaaaa ttgatttaac
     6781 gcttgttttg cttgaggttg aaaatctaaa aaattcaatt tctcatctaa acgagagaaa
     6841 tcattttgca ttactaattt ttggctacta agtaaagaaa gggtcacaaa tctgcctcat
     6901 tattgaaaat ttggtttatt atacaaaatt ccgctatact tgctaaatat agcttacttt
     6961 ttcctatcat attcagatta tgcgatatca gaaactcatc acccaagaaa caacttggaa
     7021 atggcaatat ctcctaaaaa aacatcgtga aggagaaaat attactaagt acgaagaaca
     7081 aagcttgatc gatttaaaag ttcagttcct ctctactttg caaaactctc cggacgaagt
     7141 ggaaaaatgg attaagtcgg aaatgacgcc tgagcaacgt aagaaaatgc gtcaatcagt
     7201 acgcgccaaa cgcaaacgct tctttaatgc tgaaaagcaa acaaccaaga aaaaatccat
     7261 tgatttagag tattcgagct ggttaaggct ctctaaatat gccaaaagcc aaaaactaac
     7321 gctttctgaa gctattgtca aattaaccga tgaactcgaa aataaacaac tttacttaga
     7381 gcaagttgct aaaatgaaat caagtttaaa agatttactg aaataaaaaa agaaaaaagc
     7441 ccactaacaa gcgggctttt tttgattcaa tttttcaact gaataactat attacatagt
     7501 tacttctttt gaaccttgaa cttggatttc aacacgacga tctggtgcta agcaagcgat
     7561 taatgcttta cgacctttaa ctgcatcaca tgtgtgacca gttactgggt ttgcttcacc
     7621 gtaacctaca gctgttacat tagctgggtt agtaccttta gaaacgatgt aattagctac
     7681 tgtttcagca cgacgttgtg aaagttttaa gttagatgct tctttaccga tgcggtctgt
     7741 gtaaccatta acttggatag ctaggtttgc taagcctaag ttgctgattt cagcgtgtgc
     7801 tgcatctaaa gaagttgctg ctgctggttt taagcttgat ttaccgaaat caaataaaac
     7861 atcagagctg aatgcgaagt ttttagttac aacttctggt gcttcaactg gtgctgcacc
     7921 ttgaccgaaa cggtatgata aacctgcaga tactgagtgg atatctgggc tgtattggaa
     7981 atttgtacct cttggtatta gataaccaac tgttgtacga actgccttat ctaagttacc
     8041 aacacgattt aagtattgat attcaacacg agcagctaat tcaggagtaa ttgcatactc
     8101 aagaccagca cctaataata gagatggttt taagttgtga actttaatgc gtgaatcttt
     8161 atctacatgt tgttgtacgt agtaatcgtt gcgaactaat gcaacaccta ctttaccgta
     8221 aacatctaag ttaggaacaa cttcgtagct tggttttaag cttaagtgcg caccgtgagc
     8281 tgaatgttta gccgcagttt tttctttatc atcaccagaa aatgtagtgt taccacgaac
     8341 acgaccaaag tagtcataac ctaattctgt cgctaaacca aagttgtttt ggtttaagat
     8401 ttggtaacca ccgaatacac cgtaagttac agagttacgg ttaataccga ggttaatacc
     8461 gaggttaata ccggatccat aatcatatgt gttgtcaaat tgagttaaac cgtcgtggaa
     8521 tgatgcccaa ccagctttag cacctgcgta gaaagtgtta gcttgtggag ctgcttgagc
     8581 tactgcagct gctgataata ctgctaatgc aactaatgtt tttttcattt tgatgatcct
     8641 cttaaatatt gtcatcgatt aaaataaatt cttaataccc acaaaaagta ttaaa
//
LOCUS       DANLRW010000102         8182 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.103, whole genome shotgun sequence.
ACCESSION   DANLRW010000102 DANLRW010000000
VERSION     DANLRW010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8182
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.103"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..603)
                     /locus_tag="PXA71_002043"
     CDS             complement(<1..603)
                     /locus_tag="PXA71_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106120.1"
                     /translation="MAKQIFKQAPLPFVGQKRMFLAQVSQILNENITDDGQGWTIIDV
                     FGGSGLLAHTAKHIKPKAHIIYNDYDGYAERLKHIPDTNRLRKQIYDIIGKSTPKNKR
                     LDPDKKSQVINIIQSFDGYIDVNCVASWLLFSGQQINSLEDLFNKIFWNGVRQTDYPS
                     AEGYLDGIEVTHESFHKLLPRFQHKDKVLLLLDPPYLCTRQ"
     gene            complement(650..775)
                     /locus_tag="PXA71_002044"
     CDS             complement(650..775)
                     /locus_tag="PXA71_002044"
                     /inference="COORDINATES: protein motif:HMM:NF021626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Com family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5106121.1"
                     /translation="MQSLRLIEIRCKYCQKLLAKAKDVQHLEIKCVRCKSINKFN"
     gene            complement(922..1131)
                     /locus_tag="PXA71_002045"
     CDS             complement(922..1131)
                     /locus_tag="PXA71_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106122.1"
                     /translation="MFRNELQVIDGKRYIVLECQFRREWRVAIESRGTVTNGEAIEIC
                     QYWVKYKGVKPEQLKIVEVPDILKE"
     gene            complement(1134..1427)
                     /locus_tag="PXA71_002046"
     CDS             complement(1134..1427)
                     /locus_tag="PXA71_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106123.1"
                     /translation="MSESFSLEKALWEEPRPRLQLDLPCPVIKLEVGKRYYTINIHGV
                     DCYDGDMSFTEIDEWTYESIDDVQTKSRAEQGLLFASEADAQEWIDAMRNSSR"
     gene            complement(1420..1857)
                     /locus_tag="PXA71_002047"
     CDS             complement(1420..1857)
                     /locus_tag="PXA71_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106124.1"
                     /translation="MKTTQHILDEREQQHGNYDSFAKIYGGLRKVSDSHAEKLTWPQQ
                     IAVEMMLFKIARILNNGANHQDNYQDIAGYAMLGGGLYNPNVSAEVKALPKPLTDSIY
                     PESHLNKSSVWRLDLEFETKEEATEVLEALTGKSAGVSEVNNE"
     gene            complement(2096..2773)
                     /locus_tag="PXA71_002048"
     CDS             complement(2096..2773)
                     /locus_tag="PXA71_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage repressor protein/antirepressor Ant"
                     /protein_id="HDL5106125.1"
                     /translation="MSNQVQFPVFNFNSSAVRVIIDPNQEPWFCGADVCRILGYVNES
                     LTLQKHCKENGVSKRYLTDKMQRQQKAIFINEPNLYRLIIKSRKPEAEKFEAWVFEEV
                     LPQIRKTGKYALQNNQQNLPLAPPPKKYSFDFTEDELQSLIWAWFAFVRGIHTFRYIY
                     PMFQKLGSNIAPEIYGQGFEYSHTAQSAHKILERITREFDCDPMTNWRVLKHLRGFDP
                     AFKKPTF"
     gene            complement(3021..3860)
                     /locus_tag="PXA71_002049"
     CDS             complement(3021..3860)
                     /locus_tag="PXA71_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HDL5106126.1"
                     /translation="MANSVMIVQGVEVKVTARDGEDYISLTDMCKAFGDSDQLIKNWL
                     QNKNTIEFLQVWEELNNPNFNLVELHQIKNNIGLNRFVMSVKKWTATGAIGLVAKAGR
                     YGSGTYAHKDIALEFGSWLSPEFKLYLIKEFQRLKQQEANESKLEWSVKRILSKANYR
                     IHTDAIKAHIIPALLNTKQHTFVYSSEADILNQALFGQTAKQWKDRNPNLKGNMRDHA
                     TVEQLTVLAALESQNALLIEQGYSQEERLAMLNRLAIQQMSSLLQTRAIEELKEKPLL
                     IEE"
     gene            4090..4467
                     /locus_tag="PXA71_002050"
     CDS             4090..4467
                     /locus_tag="PXA71_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106127.1"
                     /translation="MFSLLRDALTFAAMFTGILFPAIIHKYDLSLGTQIQLLSFVPAF
                     FVLCHFLIKRKYQRDFDRLSYLSAVVCVAMCAGVGAFSQSEMIELGFKVERVLDYVTI
                     KFLLYFWSLLLLPVVLRKLFGKD"
     gene            4599..4787
                     /locus_tag="PXA71_002051"
     CDS             4599..4787
                     /locus_tag="PXA71_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106128.1"
                     /translation="MKELFKQWLINQDSPFINSCGVECILSKVDDWLNIINANEEETE
                     TLVEWLNAFLQEVSVFVA"
     gene            complement(4791..5288)
                     /locus_tag="PXA71_002052"
     CDS             complement(4791..5288)
                     /locus_tag="PXA71_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MazG-like family protein"
                     /protein_id="HDL5106129.1"
                     /translation="MQQLIKNIEQWAEDRNLINGSTPQKQMLKLMEEFGELCAGVATN
                     EFETILDSLGDCLVICTIMRKQLKMEKLFSISHCDNTNFNCGVAAQIVQANIDLGNVA
                     SELSRGCDLSRLEDYLSGFENQLDLIAQFYKTDVQTALLYAYIQIKNRKGKMIDGVFV
                     KAEDL"
     gene            complement(5272..5472)
                     /locus_tag="PXA71_002053"
     CDS             complement(5272..5472)
                     /locus_tag="PXA71_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106130.1"
                     /translation="MTDTKRLDFIKKHKMEIRYNGLSDEFVISNHAENSQHFRMARNA
                     DLRTAIDEAMKEMRGLNNATTN"
     gene            complement(5469..5987)
                     /locus_tag="PXA71_002054"
     CDS             complement(5469..5987)
                     /locus_tag="PXA71_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HDL5106131.1"
                     /translation="MNEDKFFSVDVSNDIHILNLHETLEQAKQSCLNGATEAYEFAGD
                     MDDHESYEAYDLPYAVYGVVLGRAKSDIRPLTDEERESELFGEVEQVIEPPTLVENNG
                     WISIEDKLPPIETDVLGLCDISGMQLILIVSRELADNEWYFLSVNQYGLDDDVIAVTH
                     WQPLPKLPKDNQ"
     gene            complement(6097..6900)
                     /locus_tag="PXA71_002055"
     CDS             complement(6097..6900)
                     /locus_tag="PXA71_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdQ family protein"
                     /protein_id="HDL5106132.1"
                     /translation="MDKSTIQQISTLAVAATKEVQTDFGTVMLPEGIKLQNLEPFQAH
                     RNQFRAAFSTQRFGSLIEYATANAQENAQCFIDQEKMSAEIVFDMGNREQAGHAKHRA
                     NLVMKKTAAYKALCEINGSRRSQRDFSDFLEDWGGYLTAYHHEDEISIKNAVQAVRKM
                     TIDYARNEEHELSDFAAKKSAMESVEAKSTLQLPTHLVFTCNPYNGLDTRSFTLRVQV
                     LTGSGEPVLTARLVQAEQIEEAIATEFAEKLSDALSETSIKVNIGTIEI"
     gene            complement(6970..7329)
                     /locus_tag="PXA71_002056"
     CDS             complement(6970..7329)
                     /locus_tag="PXA71_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106133.1"
                     /translation="MAKTNVPEFLDELDCGIFKDKLATALSEVALGVLTHDKKGKVTV
                     EFSLDKMDSDSPSVQIQHKLSYVKPTKRGKSAEEDTTATPMYVHKGGALSATPEKTET
                     AVKESPSGLKALSKAAA"
     gene            complement(7365..7823)
                     /gene="ssb"
                     /locus_tag="PXA71_002057"
     CDS             complement(7365..7823)
                     /gene="ssb"
                     /locus_tag="PXA71_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDL5106134.1"
                     /translation="MAGINKVIIVGRLGNDPELRTMPNGDTTAKISVATSTEWTDKVS
                     GDKKQATEWHSIIAFRNLADIIGKYLKKGSQVYVEGKLRTRKWQAQDGTDRWTTEIIA
                     DQLQMLGSSSSGNSNNNWATEPAGNPPPTNPYNHVMTDSESRDFDDDIPF"
     gene            complement(7826..8023)
                     /locus_tag="PXA71_002058"
     CDS             complement(7826..8023)
                     /locus_tag="PXA71_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106135.1"
                     /translation="MARKIDAGVEIVEVDKLFIAKFFYDGKLQHTTYPQYSRQNAIML
                     INRKIERFNVGRDKPIKLYKE"
     gene            complement(8007..>8182)
                     /locus_tag="PXA71_002059"
     CDS             complement(8007..>8182)
                     /locus_tag="PXA71_002059"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106136.1"
                     /translation="KQLAPFALLILLLGIVGRMDYDDHIQMQRYKCERNQGVWQVESN
                     GNQYCGGKYGTKN"
BASE COUNT         2131 a         1642 c         1609 g         2800 t
ORIGIN      
        1 ttggcgagta caaagatatg gcggatcaag taataacaat accttatctt tatgctgaaa
       61 acgtggtaat agtttatgaa aactttcgtg agtaacttct attccatcta aatagccttc
      121 cgcacttgga taatcggttt ggcgaacacc attccaaaat attttgttaa atagatcctc
      181 taaactatta atttgctgtc cgctaaatag caaccaagaa gccacacaat ttacatcaat
      241 atacccatca aaagactgaa taatattgat aacttgagat ttcttatcag gatctaatcg
      301 cttgttttta ggcgtactct tcccaataat gtcataaatt tgcttgcgta gcctatttgt
      361 atcgggaata tgctttagcc gctccgcata tccatcataa tcattgtaga tgatgtgagc
      421 ttttggtttg atatgtttgg cagtatgagc taataaccca ctaccaccaa atacatctat
      481 gattgtccaa ccttgtccgt catcagtaat attctcattt aaaatttgag aaacctgagc
      541 tagaaacatt cgtttctgac ctacaaacgg aagtggggct tgtttaaaga tttgctttgc
      601 catagttctc ctatggcgtt caggcgttct taacgctcag acactcaatt cagttaaatt
      661 tattgattga tttacaacgt acacatttaa tttctaaatg ttgtacatct ttcgcttttg
      721 ccaataattt ttggcaatac ttacagcgga tctcaattaa tcttaatgat tgcatataaa
      781 tacactttta cttcattttt tgataaaatt ccgcctacct agctaggtgg cggcgtatgg
      841 ctatatgcaa gcgtgctttg cgtagctggc attttaagtg ttaccgcact tataatgtcg
      901 ccgtttttaa ctcatttgtc cttattcttt cagaatatct ggcacttcaa caattttcag
      961 ttgctcaggt tttactcctt tatatttaac ccaatattgg cagatttcga ttgcttctcc
     1021 attcgttaca gtacctctag actctattgc aactctccat tcgcggcgaa attggcattc
     1081 aagtacgata taacgtttac catctattac ttggagttca tttctaaaca tagctaccta
     1141 ctactatttc gcattgcatc tatccattct tgagcatctg cttcactggc aaatagtaac
     1201 ccttgttcag ctctgctttt tgtctgcaca tcatcaatac tttcataagt ccattcatca
     1261 atttcggtga agctcatatc tccatcataa cagtcaacgc catgaatatt gattgtataa
     1321 tagcgtttac caacttcaag ttttataaca gggcaaggta aatctaattg caatcttggg
     1381 cgtggttctt cccacagtgc tttttctaaa ctaaatgact cactcattat ttacctcact
     1441 aacaccggca cttttaccag ttaaagcttc caacacctca gttgcctctt ctttggtctc
     1501 aaactccaaa tccagccgcc aaacagagct tttattaagg tgtgattcgg ggtaaatact
     1561 atcggttaat ggttttggta atgctttaac ttctgccgac acatttgggt tataaagtcc
     1621 tccacctaac attgcataac cggcaatgtc ttgataattg tcttgatgat ttgctccgtt
     1681 atttaaaatt cgggcaattt tgaataacat catctcaacg gcgatttgct gtggccaagt
     1741 gagcttttct gcgtgtgagt cgctgacttt gcgtaaacca ccataaatct tggcaaaact
     1801 gtcgtagttg ccgtgttgtt gttcacgttc atctaaaatg tgttgagttg ttttcatcgt
     1861 gaattttcct ttagaaatag ccgcttgcgg aacaagcggt tgggttaatt agcgttgagc
     1921 catacaaatt ttgccatcgc agtcgttgcg taactctaga tggtcagcag caactgcaaa
     1981 ggcggttaaa aagagtatga tttttgcgta tttcatcgtc taatcctcaa aatttgggtg
     2041 tggaaatccg ccgcttgatg tttcgcaagc ggtcgggttt tataattttt tgtgattaga
     2101 acgttggctt tttaaatgcc gggtcgaaac cacgaaggtg tttgagtaca cgccaattcg
     2161 tcattgggtc gcaatcaaat tctcgggtaa tccgttcaag gattttatga gccgattgtg
     2221 cggtgtggct atattcaaaa ccctgtccgt agatttcagg tgcgatattt gagccgagtt
     2281 tttgaaacat cgggtagata tagcggaaag tgtgaatgcc acgcacgaaa gcgaaccaag
     2341 cccatatgag gctttggagt tcatcttcgg taaagtcgaa agagtatttc tttggcggtg
     2401 gtgcaagcgg taggttttgc tgattatttt gcaacgcata tttaccagtc ttgcgaattt
     2461 gtggcagaac ttcttcaaat acccacgctt caaacttttc cgcttctggt ttgcgtgatt
     2521 tgataatcag tcggtatagg tttggttcgt tgatgaagat cgctttttgt tgtctctgca
     2581 ttttatcggt gaggtatcgt ttcgataccc cattttcttt acagtgtttt tgcagagtaa
     2641 ggctttcatt tacataacct aaaattcggc aaacatctgc accgcaaaac cacggttctt
     2701 gatttggatc gataatgaca cgaacagcag atgaattgaa attgaaaaca gggaattgaa
     2761 cttgatttga cattttttgt accttttgga tttaagtatt taatccgatc attaagtggg
     2821 tgatcggggt tcaacttacc ctccaaaaga tgggcggagc ttattcagat gtattgtata
     2881 tcgctctctc gccccgatca tttcggatta aacctaaaat ttaggtacaa aaaaaccgct
     2941 ttatatcgga ggcggaaacc gcttttggaa agtaagtgtg gttatcttag ccgaaagggc
     3001 ggttttttgt caattagatt ttattcttca attagcaatg gcttttcttt cagttcttca
     3061 atcgctctgg tttgtaacag cgagctcatt tgctgaatag ccaaacggtt gagcattgcc
     3121 agtcgctctt cttggctgta accttgctca attagtaggg cgttttggct ttccaatgca
     3181 gcaaggacgg taagttgctc aacggtagcg tggtctcgca tattgccttt caggttcgga
     3241 ttgcggtctt tccactgttt tgccgtttgt ccgaagagag cttgattgag aatgtccgct
     3301 tcgctggaat aaacgaaagt atgttgtttt gtattcagca atgccggtat gatgtgagct
     3361 ttgatggcat cagtatgaat gcggtagttc gccttgctta aaatgcgttt tacgctccat
     3421 tcgagcttac tttcgttcgc ttcttgctgt ttgagtcgtt ggaactcttt gatgagataa
     3481 agcttaaatt ctggactgag ccaagaacca aattcgagag caatatcttt gtgggcgtaa
     3541 gtgccgctac catatcgtcc tgcttttgct actagcccaa tagctcccgt tgcagtccat
     3601 tttttgacag acatcacaaa gcggtttaag ccgatgttgt ttttaatttg gtgtaattcc
     3661 accaaattaa aatttggatt attcagctct tcccaaactt gaagaaattc aatggtattt
     3721 ttattttgaa gccagttttt aatgagctgg tcactgtctc caaaagcttt gcacatatca
     3781 gttaggctga tgtaatcctc accatcacga gcggttactt tgacctccac gccttgtaca
     3841 atcattacgc tatttgccat ttcgtttctc cgtttttagg tacaaaaaaa gccgttggtg
     3901 gacggcttga aagtgcggtt atcttaatcc gaattggggg cggtgtcaat tagattaatc
     3961 cgtataagta tggaaccaag ttaaagagta gaactacaac acataaccaa aaaatgaaat
     4021 tcatatcttg ctcagttttg attttgtgta aaatacgctt aagtttgttt ttcatttagg
     4081 aaacctttaa tgtttagttt attgcgtgat gctttaacct ttgctgcaat gtttacaggg
     4141 attttatttc ctgcaattat tcataaatac gatctatcac ttggtacaca aatccaatta
     4201 cttagctttg ttccagcttt ctttgtgttg tgccattttc ttattaagcg aaaatatcaa
     4261 cgtgattttg acagactttc gtatttatct gctgtggttt gcgtagcaat gtgtgcaggc
     4321 gttggagcat ttagccaatc agaaatgatt gagctaggtt ttaaagttga gcgtgttctt
     4381 gattatgtga ctatcaaatt cttactctac ttttggagct tgctgttatt gccagttgtg
     4441 ctaagaaaat tgtttgggaa agattagttg gttatttaaa gagagctatt tgtcaaacct
     4501 caatatctat ttttgcgatc tgcatcgaaa aaataaattt tcgttctgac agtaaaacgc
     4561 tttcgtagta atctcataaa aaacataagg ggaacactat gaaagagctt ttcaaacaat
     4621 ggctaatcaa tcaggactcg ccattcatta atagctgtgg cgttgagtgt attttgtcaa
     4681 aagttgatga ctggctaaac ataatcaacg ccaacgaaga agaaaccgaa acgcttgttg
     4741 agtggctaaa tgcttttctg caagaggttt ctgtttttgt ggcttaggta ctataaatct
     4801 tctgctttca caaacacgcc atcaatcatt tttccttttc gatttttgat ttgaatataa
     4861 gcatagagga gagctgtttg tacgtctgtt ttgtagaatt gagcgataag atcaagctga
     4921 ttttcaaagc cgcttaagta atcttctaat cgagataaat cacaacctct agataactca
     4981 cttgctacat tacctaaatc aatattggcc tgaacaatct gagccgcaac tccacaatta
     5041 aaattggtat tatcgcaatg gctaatgcta aacagttttt ccattttgag ctgtttacgc
     5101 ataatcgtac aaatcactag acagtcacct agactgtcta aaatagtttc aaattcattg
     5161 gttgctacac ctgcacataa ttccccaaac tcttccatta gttttaacat ttgcttttgt
     5221 ggggtagagc cgttaattaa attgcggtct tccgcccatt gttcgatgtt tttaattagt
     5281 tgttgcattg tttagtcctc tcatttcttt cattgcttca tcaatcgccg tgcgtaaatc
     5341 ggcatttctt gccatacgga aatgctggct gttttcagcg tgattactaa taacaaattc
     5401 gtctgataag ccattgtagc ggatttccat tttgtgcttt ttgataaaat ctaagcgttt
     5461 ggtgtctgtc attggttgtc ctttggcagc tttggaagtg gttgccagtg ggttactgca
     5521 atcacatcgt catcaagccc atattgattt acactaagaa aataccactc gttatcggca
     5581 agttctcttg aaactattaa aattaactgc attcctgaaa tatcgcataa ccctagcaca
     5641 tccgtttcaa taggtggtaa tttgtcctca atggatatcc agccattatt ttctacaagt
     5701 gttggtggtt caataacttg ttcaacttcc ccaaataact ctgattctct ttcttcgtcg
     5761 gttagtgggc ggatatctga ttttgctcta cctaaaacaa caccataaac tgcatagggt
     5821 aaatcatagg cttcatagct ttcgtgatca tccatgtcac ccgcaaactc ataggcttca
     5881 gtagcaccat ttaaacagct ttgttttgct tgctctaagg tttcgtgcag atttaggata
     5941 tgtatatcat ttgatacatc caccgaaaaa aatttgtctt cattcatttt ctttctccaa
     6001 aataccaata gttgagagaa taataaccgc ttgtattcaa caagcggtca attttcatta
     6061 aaaacttaca agtaaactta taagctaact tacaagctag atctcaatcg taccgatatt
     6121 gaccttgatt gatgtttcgc taagtgcatc ggatagtttt tccgcaaact cagtcgcaat
     6181 cgcctcttca atttgctcag cttgaactaa gcgggcggtt aataccggct caccgctacc
     6241 ggttagcacc tgtacacgca gagtaaatga tcgagtgtct aagccgttat atgggttgca
     6301 agtaaataca aggtgagttg gtagttgcag tgtagattta gcttccaccg attccattgc
     6361 tgattttttg gctgcgaaat cgctgagttc atgttcttcg tttcgggcgt agtcaatcgt
     6421 cattttacgc accgcttgga cggcattttt aatactgatt tcatcttcgt ggtggtaagc
     6481 ggtcaagtag ccgccccaat cttcgaggaa atcagaaaaa tcacgctgtg agcggcgtga
     6541 gccattaatt tcgcatagag ctttgtaggc tgcggttttc ttcatcacca aattagcacg
     6601 atgtttagcg tgaccggctt gctctcggtt gcccatatcg aatacaattt ccgcactcat
     6661 tttctcttgg tcaataaagc attgtgcgtt ttcttgggca ttggcggtag catattcaat
     6721 caggctacca aaacgttgcg ttgaaaacgc tgcacggaat tgattacggt gagcttggaa
     6781 aggctctaaa ttttgtaatt taatgccttc aggtaacatt actgtgccaa aatcagtttg
     6841 aacctcttta gtcgcagcta cagcaagagt agagatttgt tgaatagttg atttatccat
     6901 tttgagttcc tttttgttta agtaaaaata aagccacgca ttaacgtggc ttggattgaa
     6961 aataattgat tatgcagcag ctttagagag agcctttaaa ccgctagggc tttcttttac
     7021 tgccgtttct gttttttcag gtgtagcaga taatgcccca cctttatgaa catacattgg
     7081 tgtggcggta gtatcttctt cggctgactt accacgtttg gtcggtttga catagctcaa
     7141 tttgtgctga atttgaacag atgggctgtc gctatccatt ttgtctaagc taaattcaac
     7201 cgtaactttc cctttcttat cgtgggttag tacgcctaac gccacttctg aaagagctgt
     7261 tgccagcttg tctttgaaaa taccgcaatc taattcatct aagaattcag gtacatttgt
     7321 ttttgccatt ttgggttctc ctaattaggg tttgaataaa attattagaa cggaatatca
     7381 tcatcaaaat ctcgtgattc tgaatccgtc attacgtggt tatatggatt ggttggcggt
     7441 gggtttcctg ccggttcggt tgcccaatta ttattgctgt ttccgctgct tgagctacca
     7501 agcatttgta gctgatcagc gatgatttca gtcgtccagc ggtctgtgcc gtcttgggct
     7561 tgccatttgc gagtacgtag tttgccctca acatagactt gtgagccttt tttcaggtat
     7621 ttgccaataa tgtcagctaa attccgaaag gcgataatgc tatgccactc tgtggcttgt
     7681 tttttatcgc ctgatacttt atctgtccat tcggtcgaag ttgctacgct gattttggcg
     7741 gttgtatcgc cgtttggcat tgttcgcaat tccgggtcgt tacctaggcg accgacaata
     7801 atcactttgt taattcctgc cattgttatt ccttataaag tttaattggt ttatctctgc
     7861 caacgttgaa ccgctcaatt ttgcggttaa tcaacataat tgcgttttgg cggctgtatt
     7921 gtggataggt tgtgtgctgt aatttgccgt cataaaaaaa cttggcgata aatagtttat
     7981 ctacctcaac aatctcaaca ccggcatcaa tttttcgtgc catatttccc tccgcagtat
     8041 tgattgccat tactctcaac ttgccaaacg ccttgatttc gttcgcattt gtaacgttgc
     8101 atttgtatgt ggtcgtcata atccattcgc ccgacaatgc ctaatagcaa aattagcaag
     8161 gcaaatgggg caagttgttt ca
//
LOCUS       DANLRW010000103         8156 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.104, whole genome shotgun sequence.
ACCESSION   DANLRW010000103 DANLRW010000000
VERSION     DANLRW010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8156
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.104"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            83..2014
                     /locus_tag="PXA71_002060"
     CDS             83..2014
                     /locus_tag="PXA71_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5106137.1"
                     /translation="MIFFTDLILKRGHSVLIDNSSVTIHTGQKVGLVGKNGCGKSSLF
                     ALLKNELQPEGGDVSLPKNWAISWVNQETPALAISALDYVIQGDREYTHLMAELDIAN
                     EKNDGNRIAIIHTQLDTIDAWTIQSRAATLLNGLGFSTEQLQLPVKSFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLERWLSNYRGTLLLISHDRDFLDPIIDRVIH
                     IEHQKLNEYTGNYTSFEIQRATKIAQQNAAYQQQQRKVAHLQSFIDRFKAKATKAKQA
                     QSRIKALEKMELIAPAYADSPFEFEFRPPLALPSPLLMMEKVSAGYAEKTVLESVKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELPPQNGSIQLAKGVQLGYFAQHQVDTLRFDE
                     SPLWHLQKLAPEKTEQELRNYLGGFDFKGDKVVQAVKSFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLEMRQALVDALTYYEGSLVVVSHDRHLLRSTVNEFYLVHDRKVEKF
                     KGDLDDYQKWLNEQNALANEPKSVLAKDSANSTACSSTNENSAAQRKEQKRLEAERRQ
                     QTAPLRKKITQLEKELEKATEKLNKLEAMLTESDIYEAENKAKLTETLAKQLEAKRLV
                     EEIEMQWLEAQEEFETMLR"
     gene            2293..2550
                     /locus_tag="PXA71_002061"
     CDS             2293..2550
                     /locus_tag="PXA71_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5106138.1"
                     /translation="MKNLRLSIHSSEHIWLRELFLKRRLELGLTQRTLGEKMGVLYSF
                     IGKVETGDRRLDIFEFIAYCKGLDLDPLSVLQEIEQQFPHK"
     gene            complement(2597..3217)
                     /locus_tag="PXA71_002062"
     CDS             complement(2597..3217)
                     /locus_tag="PXA71_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HDL5106139.1"
                     /translation="MKLWYSTTSPFARKALAVIKHHQLDDKVEMLRVTKAMDPNSPHN
                     QDNPLGRIPALQRNCGRWLFGSLLISEYLDQKGNNTPLLPKEGKPRWAVLALHNLADG
                     IMENTMPTLLQERMARPENEWWVSRHEQLMERNIRSFRQLEEALQEFGTELNLGTLTA
                     VALIDWWAFRLDKIGYDLAKNYPNLTAWAEEMNNKYAILAETKPSM"
     gene            complement(3219..3872)
                     /locus_tag="PXA71_002063"
     CDS             complement(3219..3872)
                     /locus_tag="PXA71_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01621 family pseudouridine synthase"
                     /protein_id="HDL5106140.1"
                     /translation="MTPTLPICYQHRDFIIINKPEGLSVHKDEAEIGLTELVARQLNV
                     KQVWLVHRLDKITSGLLILALNKEAAARFYHLFEQHKIYKTYWALSDKKPKKKQGRIV
                     GDMQKSRNGAWKLCHSKENPAVTQFISHSVEDSLRHFILQPKTGKTHQLRVAMKSLGS
                     PILGDKLYSGSQADRVYLHAYQLDFEYENEKISVQALPTSGHFWQKICKSNHIKHGE"
     gene            3921..4580
                     /locus_tag="PXA71_002064"
     CDS             3921..4580
                     /locus_tag="PXA71_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDL5106141.1"
                     /translation="MAVTIYLVRHGRTVWNLEGRLQGSGDSALVEEGIIGAKKTGIAL
                     KHIPFTAAYSSMQKRAQDTANYILAENERSNIPHFHHKGLNEFDFGSWEGMKSVDLQE
                     NDEYWVMKRTPAEYLAKANGGERFEQLYQRVTQAFNQIAELHQNDGKVLIVSHGMTLT
                     LLTAVLKGIAWQDFRNEEKHSFVFNTAITKVEVENGKVTVLEFNNTDHLDNVPTSQYK
                     R"
     gene            complement(4617..5663)
                     /locus_tag="PXA71_002065"
     CDS             complement(4617..5663)
                     /locus_tag="PXA71_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HDL5106142.1"
                     /translation="MSKQIFNEEELKTTEHFEPKQEFDLENAIIEEEEKAVEAELIIE
                     ESLKPSRFWIRVLLATLALFGVAVIAQSIQWLIDTFQQREWIYFAFSIVFFIVSLLGV
                     GAIISEWRKLVYLRNHQKNQQMSNQLLLEQLPSNDGEQAVKFCENIANQLNHLPSIAQ
                     AEQLWKSELNEAYNAKEVLYLFSENVLKPIDKQVKQMISRNAAENAVIVAVSPLAIVD
                     VLLMAARNIALVNKITKAYGMELGYISRLKLFKMVLKNMVFAGATEIATDVGMDFFSQ
                     NLTAKLSLRAAQGIGVGLLTARLGIKAMEFCRPVAFQANEKPRISAIRQELLTSVKNT
                     VFAKTETKEKVFSD"
     gene            complement(5663..6616)
                     /gene="dusC"
                     /locus_tag="PXA71_002066"
     CDS             complement(5663..6616)
                     /gene="dusC"
                     /locus_tag="PXA71_002066"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
                     /protein_id="HDL5106143.1"
                     /translation="MNPIPNVILAPMQGVLDPFVRNLLTSVNDYDLCISEFVRVVDQR
                     LPKKTFYRLAPELYQGGLTDSGTPVRVQLLGQHPQWLAENAALAIELGSHGVDLNCGC
                     PSKTVNGSNGGASLLKDPELIYRATKAMREAVPSDKIVSVKVRLGWDSVSQCFEIADA
                     VEQGGANEITVHGRTKVDGYRAERINWQAIGEIQQRLSIPVIANGEIWDFESAKNCQK
                     ITACKALMMGRGALNTPNLSKVVKYNVPKMAWNEVLQLLFKYVQMENQFDTGFYHVAR
                     IKQWLRYLDKEYPQAVELFDILKTEHGYDGLKAHIEKAVEE"
     gene            complement(6694..7320)
                     /locus_tag="PXA71_002067"
     CDS             complement(6694..7320)
                     /locus_tag="PXA71_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2238 domain-containing protein"
                     /protein_id="HDL5106144.1"
                     /translation="MDSRSHIIPLFLAIVITVIAVWSGLNPTDRAVWYAEVIPIFIVF
                     ALLIITYPKFQFSGLAYFLMSLWLIMHLIGAKYTFANVPFEWANQFLTPILGEDRNHF
                     DRVAHYIIGFYSFPMAEWLLRKRKCGMGVAFFFSLFFIMSVAAAYEIIEWQYAVIEGG
                     NAGVEFLGSQGDIWDAQKDMLADTLGALTALMIYLIARPDLRIHDRHF"
     gene            complement(7320..>8156)
                     /gene="djlA"
                     /locus_tag="PXA71_002068"
     CDS             complement(7320..>8156)
                     /gene="djlA"
                     /locus_tag="PXA71_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HDL5106145.1"
                     /translation="VGFFLGYQLFHGLFGGILGAFIGHLADKKLYELGSVRSSLFGKN
                     LTRQSLFTQTTFAVLGHIAKAKGRVTEADIELARALMARLKLDSAAQQLAQNAFTLGK
                     EPDFPLRQVIQEFREACGARTDLLRFFVEVQMQAALQDGQLDVNEQQILFTIAETMGM
                     SRFQFEQMIAMIMAAQQFRNGGYYQQNGSYHQQSQGGYQGSYQQPAQPSIEAAYTVLG
                     VTAQDDQNTVKRAYRKLMNEHHPDKLAAKGLPDEMMELAKEKAQQIQAAYDLICKVKE
                     WK"
BASE COUNT         2406 a         1799 c         1643 g         2308 t
ORIGIN      
        1 ttcttatttt agttcacaaa gcaatggctt tgctttttta tgctaaaata cgcaaaattt
       61 ttaacaaaat agaccgcttg caatgatctt ttttacagac ttaattttaa aacgagggca
      121 ttccgttctc attgataaca gctccgttac cattcacacc gggcagaaag tcggtttggt
      181 gggaaaaaac ggctgtggca aatcctctct ttttgcctta ctgaaaaatg aattacaacc
      241 tgaaggtggc gatgtatcgt tgccgaaaaa ctgggcgatc tcgtgggtaa atcaagaaac
      301 gcctgcgtta gctatttcag cgttagacta tgtgattcaa ggagatcggg aatataccca
      361 tcttatggct gagctagata tcgcaaatga aaagaatgac ggcaaccgca ttgcgattat
      421 ccatactcaa cttgatacca ttgatgcttg gacaattcaa tcccgtgccg ctaccctgct
      481 taacggcttg gggtttagca ccgaacaact gcaactgccg gtgaaatcct tctccggtgg
      541 ctggcgtatg cggttaaatt tggcacaagc tctgatttgt cgttccgatc tgttattgct
      601 tgacgagcca accaaccact tagacttaga tgcggttatt tggttggagc gttggctgag
      661 taactatcgt ggcactttat tgttaatttc gcacgaccgt gattttctcg atccgattat
      721 cgatcgggtg attcatattg aacatcaaaa gctcaatgaa tacaccggca attacacctc
      781 gtttgagatt caacgtgcga ccaaaatcgc ccagcagaat gccgcttatc agcaacagca
      841 acgtaaagtt gctcatttgc agagttttat cgatcgcttt aaagccaaag cgactaaagc
      901 gaaacaggca caaagccgaa ttaaagcgtt ggaaaaaatg gagcttattg ccccagccta
      961 tgctgattcg ccgtttgaat ttgaatttcg cccaccgctt gcactgccta gcccgttatt
     1021 aatgatggaa aaagtcagtg ccggctatgc ggaaaaaacg gtgttggaat cggtcaaact
     1081 gaatttggtt cccggctctc gtattggttt actcgggaga aacggtgcag ggaaatccac
     1141 gctgattaaa ttattggcgg gcgaacttcc gccccaaaac ggctcaattc aactggcaaa
     1201 aggcgtgcaa ctcggctatt tcgcccaaca tcaggtggat acactacgtt ttgatgaaag
     1261 cccactttgg catttacaaa aactcgcacc ggaaaaaacc gagcaggaat tacgcaatta
     1321 tttaggcggt ttcgatttta aaggcgataa agtggtacaa gctgtgaaat cattctccgg
     1381 cggagaaaag gcccgtttag tgcttgcctt aattgtatgg caacgcccga atttactgct
     1441 attagatgag ccaaccaacc atttagattt agaaatgcga caagccctgg ttgatgcact
     1501 gacctattac gaaggctcgc tagtggtggt ttcgcacgac cgccatttat tgcgtagcac
     1561 cgtgaatgaa ttttatttag tgcacgaccg caaagtggaa aaatttaaag gtgatttaga
     1621 cgattaccaa aaatggctca atgagcaaaa cgccttagcc aacgagccga aatccgtact
     1681 tgcaaaagat tcggcaaatt cgaccgcttg ctctagcacc aatgaaaata gtgcagctca
     1741 acgcaaagag caaaaacgct tagaggcaga gcgccgccaa caaaccgccc cattgcggaa
     1801 aaaaattact caactggaaa aagagttaga aaaagcaacc gaaaaattaa ataaactcga
     1861 agcaatgctt accgaaagcg acatttatga agccgaaaat aaagcaaaac taactgaaac
     1921 acttgcgaaa cagttagagg caaaaaggct ggttgaagaa attgaaatgc aatggttgga
     1981 ggctcaggag gagtttgaga ccatgttacg ctagggttct acaagatagc gcaagcgtcc
     2041 acgcttgtgc catttaaggg aactatacac ctcaaaaaaa caatgatcat taagctagct
     2101 tttttataaa tttaaaaacc tatagattaa ataaataatg atattaatag taaaatcacg
     2161 agtgcaacta cactgacgat aataaaatca ggcatactta ttctccctat aaaatgtggt
     2221 aatgtaacta caaattaatt atataatgaa cctaaaaaag gttcaacatt atttgtacct
     2281 aatataggtg caatgaaaaa tcttagatta tcaatacatt ccagcgagca tatttggtta
     2341 agagaactat tcttaaaacg ccgtttggaa ctagggctaa cacaacgcac attaggagaa
     2401 aaaatgggcg ttctttactc atttatcgga aaagtagaaa caggagatcg cagattagat
     2461 atttttgaat ttatcgctta ttgcaaaggg ttagatttag atcctttatc tgtattgcaa
     2521 gaaattgaac aacaatttcc tcataaataa aggcattgag ttataactca atgcctttat
     2581 tttctatgtc aaatctctac atgctcggct tagtctctgc cagaatggcg tatttattat
     2641 tcatttcctc tgcccaagcg gttaaatttg ggtaattttt tgcaagatcg tagcctatct
     2701 tatctaagcg gaatgcccac cagtcaatta atgctactgc ggttaatgtg cctaaattca
     2761 gctctgtgcc aaactcttgc aatgcctctt ctaattgtct gaacgaacgg atattgcgtt
     2821 ccattaattg ctcgtggcgg ctgacccacc attcattctc ggggcgagcc atacgttctt
     2881 gtaataaagt tggcatcgta ttttccataa tgccgtccgc caaattatgt aatgccaaca
     2941 ctgcccagcg aggtttaccc tctttaggta acagtggagt gttattgcct ttttggtcaa
     3001 gatattcgct aattaacaaa ctaccgaaaa gccaacgtcc gcagttgcgt tgtagggcag
     3061 gaatacgtcc taacgggtta tcttgattat gtggcgaatt tggatccatt gcttttgtca
     3121 cccgcaacat ttcgacttta tcgtctaatt ggtggtgttt aatcaccgca agggctttgc
     3181 gggcgaaagg gctggtggtt gagtaccaaa gtttcatact attctccgtg tttgatgtga
     3241 ttggatttgc aaattttttg ccaaaaatga ccgcttgtcg gcaaggcttg cactgagatt
     3301 ttctcatttt cgtattcaaa atcaagctga taagcgtgca aataaacacg gtcggcttgg
     3361 ctacctgaat agagtttatc acctaaaatc gggctgccca aacttttcat tgccactctt
     3421 aattggtgag ttttgcctgt tttgggttgc aaaataaaat gcctgagcga gtcttcaaca
     3481 gaatgagaaa taaattgcgt tactgccggg ttttccttac tgtggcataa tttccacgct
     3541 ccatttctgc ttttttgcat atcgccaaca attctaccct gctttttctt cggcttttta
     3601 tcgcttaatg cccaataggt tttgtagatt ttatgctgtt caaataaatg gtaaaacctt
     3661 gctgccgcct ctttattcaa cgctaaaatc agtaaacctg aggtgatttt atccagacgg
     3721 tgaaccagcc aaacctgctt tacattcagt tggcgagcca ctaattccgt taagccgatt
     3781 tcagcctcat ctttatgcac actcaagcct tccggcttat tgataataat aaaatcacga
     3841 tgttgataac aaataggcaa tgttggggtc attttgctat aatccttcca atttttgact
     3901 attttagcaa ggaaattaca atggctgtta ccatttattt agtacgacac ggcagaaccg
     3961 tgtggaattt ggaaggcaga ttacaaggct cgggcgattc cgctttagta gaagaaggga
     4021 ttatcggagc gaagaaaacc ggcattgcgt taaaacatat tccgtttacc gccgcctatt
     4081 ccagtatgca gaaacgggct caagataccg caaactacat tttagcagaa aatgaacgca
     4141 gtaatattcc gcattttcat cataaaggct tgaatgaatt tgattttggc agctgggaag
     4201 gaatgaaatc tgtcgatttg caagaaaatg atgaatattg ggtgatgaaa cgtacaccgg
     4261 cagaatatct ggcaaaagca aacggtggcg agcgatttga gcaactttat caacgggtga
     4321 ctcaggcgtt caatcaaatc gccgagctac accaaaatga cggcaaagtg ctgattgttt
     4381 cacatggtat gaccttaacc ttactcacgg ctgtgttaaa aggcattgcg tggcaagatt
     4441 tccgcaatga agaaaaacat agctttgtgt tcaatactgc cattacgaaa gtagaagtag
     4501 agaatggcaa agtaacggtg ctggaattta ataataccga ccatttggat aatgtgccaa
     4561 caagccaata caaacgataa tattaagggc ggaacattgt ccgcccatag cattttctaa
     4621 tcagagaaca ctttttcttt cgtttctgtt ttagcaaata ccgtattttt gaccgaagta
     4681 agcaactcct gacgaatagc tgaaattctt ggcttctcat tcgcttgaaa agcaacagga
     4741 cgacaaaatt ccattgcttt aatgccaagg cgagcagtga gtaaacccac accaatacct
     4801 tgtgcggcac ggagcgataa tttcgccgta aggttttgcg agaagaaatc cattccaaca
     4861 tcagtagcga tttcggttgc accggcgaac accatatttt tcagcaccat tttgaacagt
     4921 tttaagcggc tgatataacc caattccatt ccataggctt tggtaatttt attcactaaa
     4981 gcgatatttc ttgccgccat taacaacaca tcaactattg ccagcgggct aaccgccaca
     5041 atcaccgcat tttctgccgc attgcgggaa atcatctgct taacctgttt atctatcggc
     5101 tttagcacat tttcgctaaa cagatatagt acctctttgg cattataagc ctcgttcagt
     5161 tcgcttttcc aaagttgctc ggcttgagca atgctcggca agtgattaag ctgatttgca
     5221 atattttcgc aaaatttgac cgcttgttcg ccatcattgg aaggcagctg ttccagcaat
     5281 aattggttac tcatttgttg atttttctga tgatttcgca aatacaccaa ctttcgccat
     5341 tcggaaataa tcgccccaac gcccaacaag ctgacaataa aaaagactat cgagaacgca
     5401 aaatagatcc actctctttg ctggaacgta tcaatcaacc actgaatact ttgagcaatt
     5461 accgccacgc caaacaaggc aagtgtggca agtagtactc gaatccaaaa gcgggaaggc
     5521 ttaaggcttt cttcaataat cagctccgcc tcaactgctt tttcctcttc ttcaataatc
     5581 gcattttcga gatcaaactc ttgtttaggt tcaaaatgct cggttgtttt tagctcttct
     5641 tcattaaaaa tttgcttact cattattcct ccactgcctt ttcaatatgt gcttttagac
     5701 catcatagcc gtgttcggtt ttcaagatat caaataattc taccgcttga ggatattctt
     5761 tatccaaata acgtagccat tgtttgatgc gagcaacgtg gtaaaaaccg gtatcaaact
     5821 gattttccat ctgaacgtac ttaaacaata gctgtagcac ttcattccac gccattttcg
     5881 gaacattata tttcaccact ttgcttaaat tcggtgtgtt taacgcccca cgccccatca
     5941 ttaatgcctt gcaagcggtt attttttggc aatttttcgc cgattcaaaa tcccaaattt
     6001 cgccgttggc gataacagga atagacagcc gttgttgaat ttcgccaatc gcctgccaat
     6061 taattctttc tgctcgataa ccatcaactt tggttcgccc gtgaacggta atttcattcg
     6121 ctccgccctg ttctaccgca tcggcaattt caaaacattg gctaacggaa tcccaaccta
     6181 atcgcacttt tacggaaacg attttatcgc ttggcacagc ttcacgcatc gctttggttg
     6241 cacgataaat cagttccgga tcttttaata acgaagcccc accattgctg ccatttaccg
     6301 ttttagaggg gcagccacag ttgagatcta ccccgtgtga accaagctca atggcaagag
     6361 ctgcattttc tgccagccac tgtgggtgtt gccctaaaag ctgtacccgc actggtgtgc
     6421 cggaatcggt taatccgcct tgatatagct caggggctag gcgataaaag gttttcttcg
     6481 gtaaacgttg atcgaccact cgcacaaatt cggaaataca gagatcgtag tcattcactg
     6541 aagttaaaag gttgcggaca aaagggtcta aaaccccttg catcggggca agaataacgt
     6601 taggaattgg attcattggt aaaataaaaa atacaagcgg ttattttttc tcaacatttt
     6661 gcaaaaaatt ggcaagaaac aaccgcttga aggttaaaaa tgtctatcgt gaatgcgcaa
     6721 atcggggcga gcgatcaggt aaatcatcag tgcggttaat gccccaagag tatccgcaag
     6781 catatctttt tgagcgtccc aaatatcccc ttgcgagcct agaaattcca cgccggcatt
     6841 gccaccttca atcacggcat attgccattc aataatttcg taagctgccg ccaccgacat
     6901 aatgaaaaac agcgagaaga aaaatgctac gcccattccg cacttgcgtt tacgcagtaa
     6961 ccattctgcc atcgggaagc tgtaaaaacc gataatgtaa tgtgctactc gatcaaaatg
     7021 gttacgatct tcacctaaaa tcggggttag aaattgattt gcccactcaa acggcacatt
     7081 ggcaaaggta tattttgccc cgatcaagtg cataatcagc caaagcgaca tcaaaaaata
     7141 agctaaccca ctaaactgaa atttagggta agtgataatt aaaagggcaa aaacgataaa
     7201 aatcggtatc acttccgcat accaaactgc gcggtctgtc ggatttaacc ctgaccaaac
     7261 cgcaatcacg gtaataacaa tcgctaaaaa tagagggatg atatgcgagc gtgaatccat
     7321 tatttccact ctttcacttt acaaattaaa tcgtacgccg cttgaatttg ttgagctttc
     7381 tcttttgcca actccatcat ctcatcaggc aaacctttag cggctaattt atccgggtga
     7441 tgttcgttca ttaacttacg ataagcccgt ttcactgtat tttgatcgtc ttgtgcggtt
     7501 acgcctaata cggtataggc tgcctcaatg cttggttgtg caggctgctg ataactgccc
     7561 tgatagccac cttgagattg ctgatgataa ctcccatttt gctgataata gccaccattg
     7621 cggaattgtt gagctgccat aatcattgcg atcatctgct caaattggaa gcgagacatt
     7681 cccattgttt cggcaatcgt aaacagaatt tgttgctcgt tcacatcaag ttgcccatct
     7741 tgcaaggctg cctgcatttg cacttcgaca aagaaacgta ataagtcagt tcttgcccca
     7801 caggcttctc tgaactcttg aatgacttgg cgtaacggga agtcaggctc tttacctaag
     7861 gtaaaggcat tttgcgctaa ttgctgggct gcactatcta attttaagcg agccattaac
     7921 gctcgggcta attcaatatc cgcttcagta acacgccctt ttgctttcgc aatatgcccc
     7981 aacaccgcaa aagtggtttg ggtgaaaagc gattggcgag ttaaattttt accgaaaaga
     8041 cttgaacgaa ctgaacctaa ttcatagagt tttttatcgg ctaaatgccc gataaaagcg
     8101 ccaagtatcc caccaaataa accgtgaaaa agctgatagc ccaagaaaaa accgac
//
LOCUS       DANLRW010000104         8129 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.105, whole genome shotgun sequence.
ACCESSION   DANLRW010000104 DANLRW010000000
VERSION     DANLRW010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8129
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.105"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            26..1018
                     /locus_tag="PXA71_002069"
     CDS             26..1018
                     /locus_tag="PXA71_002069"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015701738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HDL5106146.1"
                     /translation="MKKSFILQQQEISFVKNTFTQYLIDKLGIIEVQGPILSEVGNGM
                     QDNLSGIEKAVKVNVKCIPSATYEVVHSLAKWKRHTLARFGFKEGEGLFVHMKALRPD
                     EDSLDRTHSVYVDQWDWEKVIPEGRRNFDFLKETVNEIYKAIRLTELAVEARFDIPSV
                     LPKQITFVHSEDLVQRYPNMTSKERENAICKECGAVFLIGIGGKLSDGKPHDGRAPDY
                     DDWTTESEQGYKGLNGDILVWNEELGTAFELSSMGIRVDETALRLQVALTGDEDRLEM
                     DWHKDLLAGRLPLSIGGGIGQSRLVMFLLRKKHIGEVQSSVWPKAVFEEFENIL"
     gene            complement(1142..1561)
                     /gene="atpC"
                     /locus_tag="PXA71_002070"
     CDS             complement(1142..1561)
                     /gene="atpC"
                     /locus_tag="PXA71_002070"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDL5106147.1"
                     /translation="MASQFELTVVSAERKIFEGTVTSVRVSGTDGELGVYAGHAPLLT
                     AIKPGMVKFTLADGKEEFIYVSGGFLEVQPTVVTVLADTAIRGEELDEQRILAAKRKV
                     EETLSKTSDADMTAKLAREIAKLRVYELTKTKLANKR"
     gene            complement(1589..2962)
                     /gene="atpD"
                     /locus_tag="PXA71_002071"
     CDS             complement(1589..2962)
                     /gene="atpD"
                     /locus_tag="PXA71_002071"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011978979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDL5106148.1"
                     /translation="MATGKIVQIIGAVIDVEFPQDAVPKVYDALKVESGLTLEVQQQL
                     GGGVVRCIALGSSDGLKRGLKVENTNKAIEVPVGTKTLGRIMNVLGEPIDEAGPIGEE
                     ERWTIHRAAPSYEEQANSTELLETGIKVIDLVAPFAKGGKVGLFGGAGVGKTVNMMEL
                     IRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVSLVYGQMNEPPGNRLRVA
                     LTGLTMAEKFRDEGRDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVL
                     QERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDSTVVLSRNIASLGIYPAVDP
                     LDSTSRQLDPLVVGEEHYNVARGVQGTLQRYKELKDIIAILGMDELSEDDKRLVARAR
                     KIERFLSQPFHVAEVFNGVPGKFVPLKETIRGFKGILEGEYDHIPEQAFYMAGSIDEV
                     VERAKQM"
     gene            complement(2983..3849)
                     /gene="atpG"
                     /locus_tag="PXA71_002072"
     CDS             complement(2983..3849)
                     /gene="atpG"
                     /locus_tag="PXA71_002072"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011201492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDL5106149.1"
                     /translation="MAGAKEIRTKIASVRNTQKITKAMEMVAASKMRKTQERMAASRP
                     YAESIRKAISHIAKGNIEYKHPFLTPRPVKKVGYLVVSTDRGLCGGLNINLFKTVLHE
                     LKEKDDQGVKSRLAVVGNKGISFFNPMGLEIKGHINGLGDTPAMEDLVGIVNGMVNAY
                     REGEIDEVYVVYNRFINTMSQKPTVQQLLPLPALENDSLEQTGSWDYLYEPNPQALLD
                     SLLVRYLESQVYQAVVDNLASEQAARMVAMKAATDNAGNLINELQLVYNKARQASITN
                     ELNEIVAGAAAI"
     gene            complement(3875..5416)
                     /gene="atpA"
                     /locus_tag="PXA71_002073"
     CDS             complement(3875..5416)
                     /gene="atpA"
                     /locus_tag="PXA71_002073"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDL5106150.1"
                     /translation="MQLNSTEISELIKKRIAQFNVVSEAQSTGTIVSVSDGVIRIHGL
                     SDVMQGEMIALPGNRYAIALNLERDSVGAVVMGPYADLAEGMQVQCTGRILEVPVGRG
                     LLGRVVNTLGQPIDGKGEIQNDGFSPIEVIAPGVIDRQSVDQPVQTGYKAVDSMVPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTIANVVRKLEEHGAL
                     ANTIVVVASASESAALQYLAPYAGCAMGEYFRDRGEDALIVYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERASRVNADYVERFTNGAVKGQTGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLESGLFNAGIRPAVNPGISVSRVGGSAQTKLVKKLAGG
                     IRTALAQYRELAAFAQFASDLDEATRKQLSHGQKVTELLKQKQFEPMSVAQLGLSLAA
                     AEYGYLDDIPVERVGSFEANLLAYAQSNYGEFMQELSKSGNFNDEIKDKLNEILSGFK
                     KNSAW"
     gene            complement(5429..5962)
                     /gene="atpH"
                     /locus_tag="PXA71_002074"
     CDS             complement(5429..5962)
                     /gene="atpH"
                     /locus_tag="PXA71_002074"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015674172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDL5106151.1"
                     /translation="MSELSTVARPYAKAAFDFALEQGQLEQWQQMLTFSAAVANDEQV
                     ASFLNSSLASGQISETFIKICGEQLDQYGQNFIRVMADNKRLAVLPAVLNAFLELRAE
                     QESIKDVEVVSADKLTDAQEAKIANAMEKRLGTKVRITSSIDSSLIAGVIIRYDDVVI
                     DGSSRGQLNRLSQELSL"
     gene            complement(5976..6446)
                     /gene="atpF"
                     /locus_tag="PXA71_002075"
     CDS             complement(5976..6446)
                     /gene="atpF"
                     /locus_tag="PXA71_002075"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDL5106152.1"
                     /translation="MNLNATLIGQLIAFALFVAFCMKFVWPPLIRVIEERQANIASAL
                     ASAEKAKQEQADSKAAADQEILRAKEEAQNIIDLATKRRNEILESVQAEAEVERQRII
                     EQGYAEVESERKRVQEELRQKVAALAIAGAEKIVGRSVDAAANNDIIDKLVAEL"
     gene            complement(6507..6761)
                     /gene="atpE"
                     /locus_tag="PXA71_002076"
     CDS             complement(6507..6761)
                     /gene="atpE"
                     /locus_tag="PXA71_002076"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDL5106153.1"
                     /translation="MESVITATIIGASILLAFAALGTAIGFAILGGKFLESSARQPEL
                     ASSLQTKMFIVAGLLDAIAMIAVGISLLFIFANPFIDLLK"
     gene            complement(6879..7667)
                     /gene="atpB"
                     /locus_tag="PXA71_002077"
     CDS             complement(6879..7667)
                     /gene="atpB"
                     /locus_tag="PXA71_002077"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005713638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDL5106154.1"
                     /translation="MAGTTAEYISHHLSFLSTGEGFWAVHLDTLFFSLVAGAIFLWVF
                     SRVAKNATTGVPGKLQCFVEIVIEWVNGLVKDNFHGPRNVIAPLALTIFCWVFIMNAI
                     DLIPVDFLPQLANLFGIHYLRAVPTADISATLGMSICVFALILFYTVKSKGFGGLVKE
                     YTLHPFNHWAFIPVNFILETVTLLAKPISLAFRLFGNMYAGELIFILIAVMYMADNFA
                     LQALGIPLHLVWAIFHILVITLQAFIFMMLTIVYLSIAYNKADH"
     gene            complement(7690..8073)
                     /locus_tag="PXA71_002078"
     CDS             complement(7690..8073)
                     /locus_tag="PXA71_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HDL5106155.1"
                     /translation="MSAVINRAKSQYKQALKVEFFLLCVFALGVSLWKMNFNFSFLGG
                     ALASFLPHLVFVYWVFFKKSAKNQSKMTAFYRGEGMKWLVTIILVIGCFKLIPALDVV
                     LFFVGYFIALFLNNMIPFVLSKHHH"
BASE COUNT         2405 a         1834 c         1525 g         2365 t
ORIGIN      
        1 cattctttaa ttaggaaagc aaacaatgaa aaaatctttt attttacagc aacaagaaat
       61 cagttttgtt aagaacacat ttactcaata tttaattgat aaattaggca ttattgaagt
      121 tcaggggcct attttgagcg aagtcggcaa cggtatgcaa gacaaccttt ccggtatcga
      181 aaaagcagta aaagtaaacg taaaatgtat tccaagcgct acttatgaag tggttcattc
      241 tcttgcaaaa tggaaacgcc acaccttagc tcgttttgga tttaaagaag gagaagggtt
      301 atttgttcat atgaaagctc ttcgccctga tgaagattct ttagatcgca cacactcggt
      361 atatgttgac caatgggact gggaaaaagt cattcctgaa ggtcgccgca acttcgattt
      421 cttaaaagaa acggtaaacg aaatctataa agcaattcgt ttaaccgaat tagcggtgga
      481 ggctcgtttc gatattccat ctgtattgcc taaacaaatt actttcgttc acagcgaaga
      541 cttagtgcaa cgctatccga atatgaccag caaagagcgt gaaaatgcta tctgtaaaga
      601 gtgcggagcg gtgttcttaa tcggtatcgg cggcaaatta tcagacggta aacctcacga
      661 tggacgagct ccggactatg atgactggac aaccgagtcc gaacaaggct acaaaggctt
      721 aaacggcgat attttagttt ggaacgaaga actcggcaca gcctttgaac tttcctcaat
      781 gggtattcgt gtagatgaaa ccgccttacg cttacaagtt gctttaactg gcgacgaaga
      841 ccgcctcgaa atggattggc acaaagattt attagccggc agactcccgc tttctatcgg
      901 cggcggtatc ggtcaatctc gcttagtgat gttcttacta cgcaaaaaac acatcggtga
      961 ggtgcaatcc agtgtctggc caaaagcggt atttgaagag tttgagaata ttctttaata
     1021 aaacaaaaaa gcgaacctta gggttcgctt ttgctttcta caagcggtct tattttgcaa
     1081 aaaatttact gtttttaacc gcttgtaaaa caaaacccca ctttcgtggg gttttttgat
     1141 attaacgttt attcgctaat ttggttttag tgagttcgta aacacgcagt ttcgcaattt
     1201 ctctcgctaa cttcgcggtc atatccgcat cgctggtttt tgaaagtgtt tcttctactt
     1261 tgcgttttgc ggcaagaata cgctgttcgt ctagttcttc accacgaatt gcggtatcag
     1321 ccaacactgt tactacggtc ggttgtactt caaggaaacc acctgaaacg tagataaact
     1381 cttctttgcc gtcagctaaa gtgaatttaa ccattcccgg tttaattgcg gttaataacg
     1441 gtgcatgccc tgcatacacc cctaattcac catctgtccc tgaaacacgc acgctggtaa
     1501 ctgtgccttc aaagatttta cgttctgcac tcactaccgt gagttcaaat tgagatgcca
     1561 tgttgttctc ctttagttta gaacaaaatt acatctgttt tgctctttca accacttcgt
     1621 caattgaacc cgccatatag aacgcttgtt ccggaatatg gtcgtattcg ccttctaaaa
     1681 tgcctttaaa gccacgaatt gtttctttta acggtacgaa tttgcccggt acgccgttga
     1741 atacttccgc aacgtggaat ggttgtgaaa ggaaacgttc gattttacgc gcacgagcaa
     1801 caaggcgttt gtcgtcttcc gataattcat ccatacccaa aattgcaatg atgtctttta
     1861 actctttata acgttgtaat gtaccttgta caccacgagc aacgttatag tgttcctcac
     1921 caaccacgag tggatctaac tgacgagagg ttgagtcaag agggtcaacc gccgggtaaa
     1981 taccgagtga agcgatatta cggcttaata ccaccgttga gtctaagtgg gcaaaggtag
     2041 ttgccggaga cgggtcagtt aagtcatccg ccggaacata taccgcttgc acagaggtaa
     2101 tagagccggt tttggttgag gtaatacgct cctgtaatac gcccatctct tctgcaagag
     2161 tcggctgata acctaccgca gacggcatac gacctaataa cgcagatact tcggtaccag
     2221 ctaaagtata acggtagatg ttatccacga agaataatac gtcacgacct tcatcacgga
     2281 atttttctgc catggttaag ccggttaatg ccacacgcag acggttgccc ggtggttcgt
     2341 tcatttgacc gtaaaccagc gatactttgt ctaatacgtt agagtctttc atttcgtggt
     2401 agaagtcatt accctcacga gtacgctcac ctacaccggc gaataccgag taaccgctat
     2461 gttcgatagc gatgttacgg attaactcca tcatatttac ggttttacct acacccgcac
     2521 caccgaataa gccaacttta ccacccttag caaatggagc aactaagtcg ataactttga
     2581 taccggtctc taaaagctcg gtgctgttcg cttgttcttc gtagcttggt gctgcacggt
     2641 ggattgtcca acgttcttct tcaccgattg ggcctgcttc atcaattggc tcacctaata
     2701 cgttcataat acgaccgagt gtttttgtac caaccggtac ttcaatcgct ttattcgtat
     2761 tttcaacttt taagccacgt tttaaaccat cagatgaacc aagtgcgata caacggacca
     2821 caccgccacc taattgttgt tgaacttcaa gggttaatcc tgattcaact tttaatgcat
     2881 cataaacttt tggtactgca tcttgcggaa actcaacatc gattaccgca ccgatgatct
     2941 gtacaatttt tcccgttgcc attaccgttc ctctattcat tgttaaattg ctgcggcacc
     3001 cgcgacaatt tcatttaatt cattcgtaat acttgcttga cgagctttgt tatacactaa
     3061 ctgtaactca ttaatcagat tacctgcgtt atcggttgct gctttcattg ccaccattcg
     3121 agcagcctgt tcagacgcaa gattatctac cactgcctga taaacttgag attctaaata
     3181 acgaaccagt aagctgtcta ataacgcttg tggatttggt tcatagagat aatcccaaga
     3241 accagtttgc tctaatgagt cattttccag tgcaggcaaa ggaagcaact gttgtactgt
     3301 cggtttttgt gacatcgtgt ttataaaacg gttatatacc acatacactt catcaatttc
     3361 gccttcacgg taggcattta ccataccatt aacaataccg actaaatctt ccattgccgg
     3421 tgtatcaccc aatccattga tatgaccttt aatctctagc cccattgggt taaaaaagga
     3481 gatcccttta tttcccacca cagcaagtcg agacttaaca ccttggtcat ctttttcttt
     3541 caattcatgt aaaacggttt taaataaatt gatatttaag ccaccacata aaccgcgatc
     3601 ggttgaaact actaaatagc caactttttt taccggacgt ggggtcaaaa atgggtgttt
     3661 atactcaatg ttacctttgg caatatggct aattgccttg cgaatacttt cagcataagg
     3721 gcgagaagcc gccatacgct cttgggtttt acgcattttt gatgcggcaa ccatttccat
     3781 cgctttggta attttttgtg tattacgaac acttgcaatt ttggttctta tctctttagc
     3841 acctgccata ttatttctcc gctaaaaagt tagattacca agcactgttc tttttgaaac
     3901 cagataaaat ctcgttcaat ttatctttaa tttcatcgtt gaaattgccg gattttgaca
     3961 gttcttgcat aaactcgccg tagttacttt gagcataagc taataagttt gcttcaaatg
     4021 agccaacacg ctcaaccgga atatcatcta agtaaccgta ttcagctgct gctaatgata
     4081 aacctaattg tgcaacagac atcggctcga attgtttttg tttcaacaat tcagttactt
     4141 tttgaccgtg tgaaagctgt ttacgtgttg cttcatcaag atctgatgcg aactgggcaa
     4201 atgccgctaa ttcacggtat tgagcaagtg cggtacggat accaccggca agcttcttaa
     4261 ccagtttagt ttgtgcagaa ccacctacac gggaaaccga gatacccggg tttaccgcag
     4321 ggcgaatacc ggcattgaat aagcctgatt ctaagaaaat ctgaccatcg gtaattgaaa
     4381 ttacgttagt cggtacgaag gctgaaacgt cacctgcttg ggtttcgatg atcggtaatg
     4441 cggttaaaga accggtttga cctttcacag caccgttagt gaaacgttct acatagtctg
     4501 catttacacg agacgcacgc tctaataagc gagagtgtag atagaacaca tcacccggga
     4561 atgcttcacg acccggtgga cggcgtaata acaatgaaat ttgacggtaa gcaactgctt
     4621 gcttagacaa atcatcgtaa acgatcaacg catcttcacc acggtcacgg aagtattcac
     4681 ccattgcaca acctgcataa ggtgcaagat attgtaatgc agcagattca gacgcagaag
     4741 ccactacaac gatagtgttc gctaatgcac cgtgttcttc taatttacgc accacgttgg
     4801 cgatagttga tgccttttga ccgattgcaa cgtagataca tttaatgcct gaatcacgtt
     4861 ggttgatgat cgcatcaatc gctaatgcgg ttttaccggt ttgacggtca cctataatca
     4921 attcacgctg accacgaccg attggtacca ttgagtccac cgctttgtaa ccggtttgaa
     4981 ccggttgatc aaccgattga cggtcgataa cgcccggtgc gatcacttcg attggtgaga
     5041 aaccgtcatt ttggatttcg cctttaccat cgattggctg acctaaggta tttacaacac
     5101 gacctaataa gccacgacca accggcactt ctaaaatacg accggtacat tgtacttgca
     5161 taccttctgc taaatcggca taaggtccca ttacaactgc accaacagaa tctctttcta
     5221 agtttaatgc aatcgcataa cgattgcccg gtaatgcaat catttcacct tgcattacat
     5281 cagataagcc gtggatacga ataaccccgt cacttaccga aacgattgtc cctgtgcttt
     5341 gagcttcact caccacatta aactgggcaa tacgtttttt aatcaattca ctaatttcag
     5401 ttgaatttag ttgcattttt tattcctctt acaagctcaa ctcttgactc aagcggttta
     5461 gctgtccacg actactacca tcaatcacta catcatcata acgaatgatc acacccgcaa
     5521 ttaatgaact atctattgat gaagtaatac gtactttcgt tccgagtcgc ttttccatcg
     5581 cattggcaat ttttgcttct tgtgcatctg ttaatttatc tgcagaaaca acctcaacat
     5641 ctttaattga ttcctgttct gctcttaatt ctaaaaatgc attcaatacc gcaggtaata
     5701 ctgctaaacg cttgttatca gccattacgc gaatgaaatt ttgcccatat tgatctaatt
     5761 gttcgccaca aatcttgata aacgtctcag aaatctgacc gcttgcaagt gatgagttaa
     5821 gaaaactagc tacttgctca tcgttagcga cggcggcaga aaaagttaac atctgctgcc
     5881 attgttccaa ttgaccttgt tctaaagcaa aatcgaaagc cgctttagca taggggcgag
     5941 ctactgtgct taattctgac atctgcccct cctagttata gttccgcaac tagcttatca
     6001 ataatatcgt tgttcgcagc ggcatccacc gaacgaccca cgattttttc tgcaccagca
     6061 atagccaatg cagccacttt ttgacgaagc tcttcttgaa cgcgtttacg ttcgctttca
     6121 acttccgcgt aaccctgttc aataatacgt tgacgttcca cttcagcttc tgcttgtaca
     6181 gattctaaaa tttcattacg acgttttgtt gctaaatcaa tgatattttg tgcttcttct
     6241 ttcgctctaa ggatttcttg atccgcagcc gctttagaat cagcttgttc ttgtttcgct
     6301 ttttcggcag aagccaatgc gctagcaata tttgcctgac gctcttctat cactcgaatt
     6361 agcggtggcc atacaaactt catacagaac gcaacaaaaa gtgcgaacgc aatcagttga
     6421 ccaattagtg ttgcatttaa attcacaacg ccctcctaaa agccggtaaa gttattcaac
     6481 tgaataacgg ttaatcaaat cccgacttat ttcaataaat caatgaacgg gtttgcgaag
     6541 atgaatagta atgaaatacc tacagcgatc attgcgatag catctaaaag accagcaacg
     6601 ataaacattt tagtttgtaa gcttgatgct aattccggct gacgtgcaga tgactctaag
     6661 aatttgccac ctaagatagc aaagccgata gcagtaccaa gagcagcgaa agctaataaa
     6721 attgaagcac caataattgt tgctgtgatt actgattcca taatgttctc cattagattg
     6781 aggaattagc ccgaaggctg ggttgttgat aaaaatacat atcaagcggt caatattttg
     6841 caaaaatttg cgaaaaacct accgcttgta aggctagttt aatgatccgc tttgttataa
     6901 gcgatactca aataaacaat cgttagcatc ataaaaataa aggcttgaag cgtaataact
     6961 aaaatatgga aaatcgccca aaccaagtgt aatggaatcc ccaacgcctg tagagcgaag
     7021 ttgtctgcca tatacattac tgcaataagg ataaagatta actcacctgc atacatatta
     7081 ccgaataaac ggaacgccaa tgaaatcggt tttgccaaaa gcgttaccgt ttcaagaata
     7141 aagtttaccg gaatgaatgc ccagtggtta aacgggtgta acgtgtattc tttcactaaa
     7201 ccgccaaaac ctttcgattt caccgtgtaa aataaaatta acgcaaatac acaaatagac
     7261 atacccagtg ttgcactaat atctgccgtt ggtactgcac gcaaatagtg aataccaaac
     7321 agattggcta actgtggtaa gaaatcgacc gggataaggt cgatcgcatt cataataaac
     7381 acccaacaga aaatcgttaa tgctaatggt gcaattacat tgcgaggtcc gtggaagtta
     7441 tccttcacta aaccgtttac ccactcaata acaatctcaa caaaacattg caattttccc
     7501 ggaacgcccg ttgttgcatt ttttgctaca cgcgagaaca cccataaaaa aatcgcacct
     7561 gccactaaag agaagaacag tgtatctaaa tgcactgccc aaaagccttc acctgtcgat
     7621 aaaaaactca agtgatggct aatatattct gctgtcgttc cagccataac atatcctttt
     7681 aaattaaaat tagtggtgat gtttgcttaa tacaaacggg atcatattat ttaaaaataa
     7741 tgcgataaaa taacccacga aaaacaacac aacatctaga gcagggataa gtttaaaaca
     7801 gccgatcacc aaaataatag taaccaacca tttcattcct tcaccacgat agaaagcggt
     7861 catttttgac tgattttttg cagatttctt aaagaaaacc caatatacaa acacaagatg
     7921 aggcaaaaaa ctcgctaaag caccgcctag aaaggaaaaa ttaaaattca ttttccataa
     7981 agacactcca agtgcaaaaa cgcacaagag aaaaaattca acctttaatg cttgtttata
     8041 ttgtgatttt gctctattga ttacagctga cacattttat cctttttgaa taagtaaacc
     8101 acacaatcag gctaataatt agccactgt
//
LOCUS       DANLRW010000105         8041 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.106, whole genome shotgun sequence.
ACCESSION   DANLRW010000105 DANLRW010000000
VERSION     DANLRW010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 8041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8041
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.106"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..320)
                     /locus_tag="PXA71_002079"
     CDS             complement(<1..320)
                     /locus_tag="PXA71_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5106156.1"
                     /translation="MPFYAGQVKCIFIDPPYNTKSAFTHYDDNLEHSIWLSMMYPRLE
                     ILRELLAEDGSIWITLDDNESHYLKIMLDEIFGRKNFISNLIWEKKRKPSFLGKVGKV
                     TDNL"
     gene            complement(359..618)
                     /locus_tag="PXA71_002080"
                     /pseudo
     CDS             complement(359..618)
                     /locus_tag="PXA71_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252355.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methylase N-4/N-6"
     gene            complement(759..3245)
                     /gene="torA"
                     /locus_tag="PXA71_002081"
     CDS             complement(759..3245)
                     /gene="torA"
                     /locus_tag="PXA71_002081"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL5106157.1"
                     /translation="MKKQDNIDVSRRGFLKNSSLSLAAGAGLASGTTGVVGALASTSA
                     KAAEMKTVVTAAHWGPLGVVVENGKVVKSDSVFEISVPNELQHVVADQVHGETRVKYP
                     MVRKGYLEGNKDTTLRGRDEWVRVSWDKAFELVANEMKRVREAHGANAIFGGSYGWYS
                     SGALHASRTLLQRYLNVTGGFVGVKGDYSTGAAQVIMPHVLGTIEVYEQQTSWEVILE
                     SSDIVVLWSANPLNTLRIAWTSTDQQGIEYFKKLKESGKRIICIDPVKSESCEFLGAE
                     WVPVNTGTDVALMLGMAHTLVAEGKHDQAFLKKYTTGFEKFEEYLLGKTDNQPKDAKW
                     ASQICGVPEETIKKLATDFQSKRTMLMAGWGIQRQRHGEQGHWMLVTLAAMLGQIGLP
                     GGGFGLSYHYSNGGVPSATGGILGSITANPAVEAGAKTWLDETSKSSFPVARISDALL
                     NPGKTIDYNGTQITYPDIKIVYWAGGNPFTHHQDTNTLVKAWQKPDTIIVNECHWTPT
                     ARMSDIVLPATTSYERNDLTMSGDYSMMNIFPMKQVVEPQFEAKNDYDIFAELAKRAG
                     KEAEFTEGKSEMDWLQSFYQTAFEAARKNRVIMPKFEKFWQENKPLSFKASDKAKKWV
                     RYEEFRNDPLLNPLGTPSGKIEIFSEVIAKMNYDDCKGHPTWMEHEEYSGKTTAEEPL
                     ALVTPHSKWRLHSQLAYSSLRKQYAVNDREPVLIHTEDAAARGITSGDIVRIFNKRGQ
                     VLAGAVVTDGIIKGTLALHEGAWYDPLDLGTSEQPLCKNGNPNVLTRDEGTSKLAQGN
                     SPNTATVQVEKFTGQAPEVTVFKEPKYTQG"
     regulatory      complement(3264..3460)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            complement(3464..4579)
                     /locus_tag="PXA71_002082"
     CDS             complement(3464..4579)
                     /locus_tag="PXA71_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NapC/NirT family cytochrome c"
                     /protein_id="HDL5106158.1"
                     /translation="MAKMKKIAVFVGIMALGAAVLGGTQYAMKATSSTEFCVSCHSMT
                     HPQAEWEGSVHFSNRKGIRAECSDCHLPQDGLHYVKAKIIALKDVWHTVVTNKLPDQE
                     AYEAHRLEMAQRVWAEMKENDSMTCKSCHSFDAMVLSEQTEAAQKMHKLAQETNQTCI
                     DCHKGIAHFMPDVPVDNAAAMGELAKHGAEFSTNDKTLYTLAMTPVQLAQGGEIRLLP
                     YAELHQWTAEGEQVKATVNGWQQEGAESVVYMDLGKRIMVALLPDDAQSKVNVTKTVF
                     DNVTNSNWKEINFEITAPKNAVTANITALNHFGDNLNQTHCSGCHAPIGAEHYTANQW
                     IGVVNSMKDRTSMSADDVRAVTIYLQRNAKDVAGSSH"
     gene            complement(4721..6472)
                     /locus_tag="PXA71_002083"
     CDS             complement(4721..6472)
                     /locus_tag="PXA71_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5106159.1"
                     /translation="MDKRSRWSCLVNEQGEISEWEDKAGADYFAELPQICHYAQALLY
                     SDKNSLQFYYSSNHQWLKISLERHQSFVLTQAEHTDLPYGLSKREIELLTLISSGLSN
                     EDIANELCISKRTVDKHIENIFAKTHTKSRTLLAVFAITEHLICLPTPGKLTQSILAS
                     FNIEQLALQIIAKKQPLVTASTRHEPPIFTINHHHSRPIIIGVPYVEQGIGQIDTREL
                     LNGTQLAVETINQQGGIHGREVQVATAGFYVKDKASILQAYHHLFDQEVDAISTAYAC
                     YLPEVHELIATKGIPYLHIATHSGSNKLAQNLPNQRIENMFQVCASDVTYGLGISHFL
                     QYYRYHYAPWLQNKTVMVVTVSWQKVDIGIESLTLSLREQGWNVDYLELTQEQDNYAT
                     LMAQVHNLAPSIIVFASYFAEDIVQFYQTFIRNPTNAIIYSIYAPSAFLPHEKLCEGV
                     LWSTNSGLSENYLGRQFSQHYERFFGKSPTYSQASIAYDQANILANAWKQSVSPRHFK
                     AVSNAIRLQPHYGVNGTYYFNTDSQIGLTYAETHDLSISLPQLVYQIQQGQSRVIAPE
                     LFANAQFILPPWFSEKA"
     regulatory      6636..6792
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            6781..7806
                     /gene="moaA"
                     /locus_tag="PXA71_002084"
     CDS             6781..7806
                     /gene="moaA"
                     /locus_tag="PXA71_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005607581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDL5106160.1"
                     /translation="MQSIIPIKNVGDDVVSGLVDRFQRQYTYLRLSITDVCNFRCNYC
                     LPDGYKPPSHKQTFLSVDEIQRVAKAFANLGTEKIRITGGEPTLRKDFLEIAHTISQT
                     PGIRKVALTTNGYRLERDVELWQQAGITDINVSVDSLDPRQFQLITGENKLQSILKGI
                     DKAFEIGYPKIKVNAVLMKQYTAPELDKFLTWIKDKPIQMRFIELMETGEMDSFFQAQ
                     HLSGQSVMTRLLQEGWQLQPKAMSDGPAKVLSHPDFKGEIGLIMPYEKNFCASCNRLR
                     VSALGKLHLCLFGEEGIDIRDLLASDEQQLQLETRLKSSLQGKREHHYLHIGDSGVRN
                     NLASIGG"
BASE COUNT         2208 a         1730 c         1661 g         2442 t
ORIGIN      
        1 aataaattat ctgtaacttt accaactttg cctaaaaaag atggtttcct tttcttttcc
       61 caaattaagt tagaaatgaa attcttccgc ccaaaaattt catcaagcat aattttcaaa
      121 tagtgacttt cgttatcatc aagagtgatc caaattgaac catcttcggc aagtaactct
      181 cgcagaattt caaggcgtgg atacatcatt gaaagccaaa tggaatgctc taaattatca
      241 tcgtagtggg taaaggccga ttttgtgtta tagggaggat caataaaaat acatttgact
      301 tgccccgcat aaaagggcaa aagagatttt aaggctgata aattatcacc ctgaataatt
      361 aaattttgct tgactttaga taaggtttca gcagaagctg agctgtcggc tgtcggctgt
      421 cggctgtcgg ctgtcggctg tcggctgtcg gctgtcggct gtcggctgtc ggctgtcggc
      481 tgtcggctgt cggctgtcgg ctgtcggctg tcgggcaata ttatgcgaga agtccggcaa
      541 ctcacgcaat aggcaatatg gggtttgttt tgcttttttg acggcttctt ctttgccgta
      601 ccaagtaagg gttgtcataa aatgcacctg aaaagtaaaa gtggattatt gtaacaagcg
      661 gtcaaaaaaa tagaaagttt tacaaaaaat taagcaaatt taaccgcttg caacatagaa
      721 aaggcacagt tttatactgt gcctttggtt atatgaaatt agccttgtgt gtatttaggc
      781 tctttaaata ctgttacttc tggtgcttgt ccggtgaatt tttcaacctg taccgtagcg
      841 gtatttggtg agttaccctg tgctaatttt gatgtgcctt catcacgggt tagcacgtta
      901 gggttgccgt ttttacatag cggttgctcg ctggtgccga gatcgagcgg atcgtaccaa
      961 gctccttcgt gcaaggctaa tgtacctttg ataatgccat ctgtcaccac cgcaccggct
     1021 aatacttgac cacgtttgtt aaaaatacgt acaatatcac cgcttgtaat gccacgagcg
     1081 gcggcatctt cagtatggat caacaccggc tcacggtcat taaccgcata ttgtttgcgt
     1141 aatgatgagt aagctaactg gctgtgtaaa cgccatttag agtgtggagt caccaatgcc
     1201 aacggttctt ctgcggtggt tttacccgag tattcttcgt gttccatcca agttgggtga
     1261 cctttacagt catcataatt cattttggca atcacctcag agaaaatctc aattttgccg
     1321 gacggtgtgc ctaatggatt taggagtggg tcattacgaa attcttcata acgaacccat
     1381 tttttcgctt tgtctgatgc tttaaaagaa agtggtttat tctcttgcca gaatttctcg
     1441 aatttcggca taatcacacg atttttgcgt gctgcctcaa atgcagtttg atagaaactt
     1501 tgtagccaat ccatttcaga tttgccttcg gtaaattccg cttctttgcc tgcacgtttg
     1561 gctagttcgg caaaaatatc gtagtcgttt tttgcctcaa attgcggttc gaccacctgt
     1621 ttcatcggga aaatattcat cattgaataa tcgcccgaca tagttaagtc attacgctca
     1681 tagctggtgg ttgccggcag cacgatgtca gacatacgag ccgttggtgt ccaatggcat
     1741 tcattgacga taatagtatc cggtttttgc cacgctttca ccaaagtgtt ggtgtcttgg
     1801 tggtgggtaa acggattacc ccctgcccaa tagacaattt tgatatcagg ataagtaatt
     1861 tgtgtgccat tgtaatcaat ggttttgccc gggttgagca gtgcatcgga aatacgagcc
     1921 accgggaatg aagattttga tgtttcatct aaccaggttt tcgctccggc ttctactgcc
     1981 ggatttgctg tgatagagcc taaaatgccc cctgtggcac tcggcacgcc gccgtttgag
     2041 taatggtagc ttaaaccgaa accaccaccc ggtaagccga tttgacctaa cattgcagct
     2101 agggtgacta acatccaatg cccttgttca ccgtgtcgtt ggcgttgaat cccccagcct
     2161 gccattaaca ttgtgcgttt agattggaaa tcagtcgcta attttttaat ggtttcttcc
     2221 ggcacaccac aaatttgact tgcccatttt gcatctttcg gttgattgtc tgttttaccg
     2281 agcagatatt cttcaaactt ctcaaaaccg gtggtgtatt ttttaaggaa tgcttgatcg
     2341 tgtttgcctt cagcgactaa ggtatgagcc ataccgagca ttaacgcaac atcagtgccg
     2401 gtgtttaccg gtacccattc tgcacctaaa aattcgcaag attcactttt taccgggtca
     2461 atacagataa tgcgtttccc gctctctttg agttttttga agtattcaat accttgttga
     2521 tcggtagaag tccacgcaat gcgtagcgta tttaacgggt tagctgacca aagcaccaca
     2581 atatctgaac tttctaaaat cacttcccaa ctagtttgct gttcgtacac ctcgattgta
     2641 cccaagacgt gtggcataat cacttgagca gcaccggtag aatagtcgcc ttttacacca
     2701 acaaatccgc cggtaacatt taaatagcgt tgtaacagtg tacgggaagc gtgtaatgcc
     2761 ccagaactat accaaccgta agaaccacca aaaatagcat tcgccccgtg agcctcacga
     2821 acacgtttca tttcattcgc aactaattca aatgccttat cccacgaaac tcgcacccat
     2881 tcatcacgcc cacgtagagt agtatcttta ttaccttcta agtagccttt acgcaccatt
     2941 gggtatttta ctcgtgtttc accgtgtact tggtctgcta ccacgtgttg caattcattt
     3001 ggcacagaaa tctcaaaaac agaatcagat ttcaccactt tgccattttc taccactaca
     3061 cctaaaggcc cccagtgggc ggcagttact actgttttca tctcggctgc tttggcactg
     3121 gtggaagcta atgcccccac tacaccggta gtaccactgg ctaaacctgc accggcagct
     3181 aagcttaatg atgaattttt tagaaaaccg cgacgactta cgtcaatatt gtcttgtttt
     3241 ttcataataa acctcgtttg aagttaagtt aaaaatagac acctttctaa agtcgagtgg
     3301 ataaaccatt tctcgtgtat ccattggtaa aagcaccgac ggtaattttt gcaaaatgtt
     3361 aggaaaaaat gaccgcttgt agtaggtgct ttacggcttg ctaccatatc tctgctctca
     3421 gcagacactt aggctcacaa gctcggtatc ctctaagttg caattaatgg gaactgcctg
     3481 ctacatcttt tgcattacgt tggagataga tagtcaccgc acgcacatca tcagccgaca
     3541 tagatgttct gtctttcatt gaatttacca ccccaatcca ttgatttgcg gtgtaatgtt
     3601 ctgccccaat cggtgcatgg caaccgctac agtgtgtttg gtttaagtta tcgccaaaat
     3661 gatttagtgc agtaatattg gcagtgactg catttttagg agcagtaatt tcaaaattga
     3721 tttctttcca atttgagttg gtgacattat caaacactgt ttttgtgaca ttcactttgc
     3781 tttgagcgtc atcaggtaga agagcaacca taatacgctt gcctaaatcc atatacacca
     3841 cagattccgc accttcttgt tgccagccat taaccgttgc tttaacctgc tcgccttctg
     3901 ctgtccattg atgtaattct gcataaggta acaagcgaat ttctccacct tgagcgagct
     3961 gcactggagt cattgcgagc gtataaaggg ttttatcatt tgtgctaaat tccgcaccgt
     4021 gtttagctaa ttcgcccatt gctgcggcat tatctaccgg cacatcaggc ataaaatggg
     4081 caattccttt atggcaatca atacaggttt gattagtttc ttgggctagt ttgtgcattt
     4141 tctgtgccgc ttctgtttgt tcagaaagta ccatcgcatc aaaactatga cagcttttac
     4201 aggtcataga atcgttttct ttcatttctg cccaaacacg ttgtgccatt tctagacgat
     4261 gggcttcata ggcttcttga tcaggtaatt tattggttac aacggtgtgc caaacatctt
     4321 ttaatgcgat gattttagct ttgacataat gcaagccgtc ttgtggtaga tggcaatccg
     4381 aacactcggc tcgaattccc ttacggttgg aaaaatggac actgccttcc cactctgcct
     4441 gtgggtgagt catagaatgg cagctcacac aaaattctgt tgagctggtg gctttcattg
     4501 catattgtgt gccacctaat accgcagcac ctaatgccat aataccgaca aatacagcaa
     4561 tttttttcat cttagccata aattacccca cttaatacac taaaaattaa agacagaggc
     4621 attgtattaa ctcccaagag gtataaaaat aagtaaaaat acctattacc tcgaaagagt
     4681 gagaataatt tgatctaagg caaaaatatg tagtgaaatt ttaggctttt tcagagaacc
     4741 acggcggtaa gataaattgt gcattggcaa acaactccgg tgcaatcaca cggctctgcc
     4801 cttgttggat ttggtaaacc aactgtggca agctgataga taagtcgtgg gtttctgcgt
     4861 aagttaatcc aatttggcta tcggtattaa aatagtaagt gccgtttacc ccataatgtg
     4921 gctgtaagcg gatcgcattg gagacggctt taaaatgccg tggtgaaaca ctctgtttcc
     4981 acgcatttgc cagaatattc gcttggtcat aagcaatact ggcttgggaa taagtgggcg
     5041 atttgccgaa aaaccgttcg taatgttggc taaactgtct gcctaaataa ttttcgctta
     5101 acccactatt ggtactccaa agaacgcctt cgcaaagttt ctcgtgtggc aaaaacgccg
     5161 aaggtgcata aatactgtaa ataatggcat ttgttgggtt gcgaatgaac gtttgataaa
     5221 actgtacaat atcttctgca aaataagagg caaacacaat aatggaaggt gcgagattat
     5281 gcacctgtgc cattaatgtg gcataattat cttgctcttg ggtgagttcc agataatcca
     5341 cattccagcc ttgctcccgc aaacttaggg ttaaactttc aataccgata tcaacttttt
     5401 gccaactcac cgttaccacc atcaccgttt tattctgaag ccaaggggca taatggtaac
     5461 ggtaatattg cagaaagtga gatataccta agccataggt tacatcactg gcgcaaacct
     5521 gaaacatatt ttcaattcgt tgattcggta aattttgggc aagtttattt gagccactat
     5581 gggttgcaat atgcaaataa ggaatgcctt tagttgcaat taattcgtgt acttccggca
     5641 agtagcaggc ataagcggtg gaaatcgcat caacttcttg atcaaataaa tgatggtatg
     5701 cctgaagaat acttgcttta tctttaacat aaaacccagc cgttgcaacc tgtacttctc
     5761 tgccgtgaat accaccttgt tgattgatgg tctcaaccgc aagttgagtg ccgttaagta
     5821 gctctcgggt atcgatttgc ccaataccct gttcaacata aggcacgcca ataataatcg
     5881 gacgactatg atggtggttt atcgtaaaaa tcggtggttc gtgtcgagtt gaagccgtta
     5941 caagcggttg ttttttcgcg ataatttgca atgccagttg ttcaatgtta aagctggcaa
     6001 gaatggattg ggttagtttt cccggtgtgg gtaaacagat taaatgttcg gtaatggcaa
     6061 aaacagctaa taaggttcgg cttttggtat gtgttttcgc aaaaatattt tcgatatgtt
     6121 tatcaacagt ccgtttgctg atacaaagct cattggcgat atcctcattg ctcaaaccac
     6181 tgctaattag agtgagaagc tcaatctccc ttttactcag tccataaggc aaatcggtat
     6241 gctctgcttg agtcaataca aacgattggt ggcgttctag gctgatctta agccattgat
     6301 ggtttgaact atagtaaaac tgcaagctat ttttatctga atagagcaat gcctgtgcat
     6361 agtggcaaat ttgcggtaat tcagcaaaat agtctgcccc tgctttgtct tcccattctg
     6421 atatttcgcc ttgttcattt actaaacaag accatcggct acgtttatcc attctcacct
     6481 cgaactaaaa acgttagcta aaatagcaaa attatctcgg cattaatatg atataaatca
     6541 aactaagcaa cggttgccag atttttatag gtagagcata caatttaaat tatacctctt
     6601 gcctaattag gtttctcacc ataaaatgaa aaccaattta ttgaagactc cgagcattat
     6661 ttcctaactc taaaaattaa agacaaattt ttgatatgga atttatgcca gtaacagcat
     6721 aaagctgttc aaaggataac ttagaaatgg gttgtcctct cgtgtttaga aaggtgtcaa
     6781 atgcagtcta ttatcccaat taaaaacgtg ggtgatgatg tcgtttcagg tttagttgat
     6841 cgctttcagc gtcaatatac ttatttgcga ctatccatta ctgatgtttg taacttccgt
     6901 tgtaattatt gcttgcctga tggctataag ccgccttcac ataagcaaac ttttcttagc
     6961 gttgatgaaa tccagcgggt ggctaaagcc tttgccaatt tagggacgga aaaaatccgt
     7021 atcaccggtg gtgagccaac tttacgcaaa gatttcctcg aaatcgctca cactatttca
     7081 caaacacccg gtatccgtaa agttgcccta accaccaacg gctatcgcct agagcgtgat
     7141 gttgaactgt ggcaacaagc cggtattacc gatattaatg tgagtgttga tagccttgac
     7201 ccacgccaat ttcaactgat taccggcgag aacaagttgc aatctatttt aaagggtatt
     7261 gataaagcct ttgaaattgg ctacccaaaa attaaagtca atgcggtgct aatgaagcaa
     7321 tataccgccc ctgaattgga taaattcctc acttggatca aagacaagcc gattcaaatg
     7381 cggtttattg agctgatgga aaccggtgaa atggatagtt tcttccaagc tcaacatctt
     7441 tctggtcaat cggtgatgac ccgcttatta caagaaggct ggcaattaca acccaaagcg
     7501 atgtctgacg gcccggcaaa agtgctttct caccctgatt ttaaaggcga aatcggctta
     7561 attatgccct acgagaaaaa tttctgtgcc tcttgcaacc gcttgcgtgt ttccgcactt
     7621 ggtaaactgc atctttgctt atttggtgaa gaagggattg atattcgtga tttactggca
     7681 agcgatgagc aacagttaca gcttgaaacc cgcctaaaat cttccttaca aggcaagcga
     7741 gaacaccact atttgcatat tggggatagt ggggttagga ataatttggc gagtatcggt
     7801 ggttaaacaa ccaccgagcg tgttttttct gttacttttc tttgcttcgc caaagaaaag
     7861 taaccaaaag aaaggcgacc ccagattttc cttaatcctt cgcttgttgc taacttttgg
     7921 gacgaacttt tcaaactcgc caactgcgtt ggctcaaaca cgaaaagttg tcctcaaaag
     7981 tttacgcaat cgctacggcg gaaaataggg gcaagcggta cattatttaa gatttttgca
     8041 a
//
LOCUS       DANLRW010000106         7995 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.107, whole genome shotgun sequence.
ACCESSION   DANLRW010000106 DANLRW010000000
VERSION     DANLRW010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7995)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7995)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7995
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.107"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            100..234
                     /locus_tag="PXA71_002085"
     CDS             100..234
                     /locus_tag="PXA71_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/trimethylamine N-oxide reductase
                     NapE/TorE"
                     /protein_id="HDL5106161.1"
                     /translation="MRSELLKTLLLSGLILPLLMAFAVGAYGFIVWMLQLFVIGLPGA
                     "
     gene            238..1401
                     /gene="torC"
                     /locus_tag="PXA71_002086"
     CDS             238..1401
                     /gene="torC"
                     /locus_tag="PXA71_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
                     /protein_id="HDL5106162.1"
                     /translation="MLGSIKALFTRPATKIGLGVLVGIGFIAGAISWHQFNKAMDHTS
                     TEEFCVSCHSMQQPLEELKKTAHWSNKSGVTATCSSCHLPHDYTEKYARKVQASREAW
                     AELSGKYKEEGSFEKHRLEMAEREWARFAANGSKECKACHSYERMNFDKMGEAARKAM
                     KPAAEKDQSCMDCHKGIAHHLPKADENALKSKFDQFVNKSPNQGKSYYTKGNAELFLD
                     EGLSQAIGQLETAVPVAFVQAGKNADLVELTMWRKEKGFGRIWYHDFGKNITDAVLTK
                     EFMANQPKFEVLETKEDPITGLNWQKVKLQAWIGKAQLLDDVTPIWANAENQYKTQCS
                     TCHRQPDVAHFDSNSWIGLFNGMVGFTNMDKQTGKEVLRYLQMHASDSEEAKH"
     gene            1501..3966
                     /gene="torA"
                     /locus_tag="PXA71_002087"
     CDS             1501..3966
                     /gene="torA"
                     /locus_tag="PXA71_002087"
                     /EC_number="1.7.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
                     /protein_id="HDL5106163.1"
                     /translation="MQQSRRQFLKNMSVMAAAVTMPNFLVPRNVFASEDLSQWKVSGS
                     HWGAMRAKIENGRVAEIKPFEFDKHPTEMLNGIKGLIYSDSRIRYPMVRLDWLKNRHN
                     SNTAQRGDNRFVRVTWDEALDLFYQELERVQKEYGPWALHTANVGWRSTGQFHSCGNH
                     MIRAIAMHGNSVGTAGDYSTGAGQTILPYVLGSTEVYSQGTSWEIILKESENIIFWAS
                     DPVKNLQVGWNCETHEAYAYLEKLKEKVAAKGVNVICVDPVKSKTQNFLGCEQQYINP
                     QTDVPFMLALAHTLYTENLYDKKFLDMYTVGFEKFLPYLLGETEDKVAKTPEWAAEIC
                     GISADKIREFARMLAGKRTQFIFGWAIQRQQHGEQPYWMGAVLASMLGQIGLEGGGIS
                     YAHHYSSIGIPESGAAMPGAFPLNIDEGQTPKYDNKDYKGYSDTIPVARMTDSLLHAG
                     ETIDYNGKKVTYAPFKMAIFTGCNQWHRHSERNKMKQAFQKLETIVSINYSWTATCRF
                     SDIVLPACTPFERNDIDAYGSYSNRGVIAMHKLVDPLYDSRSDFEIFRDLCRRFGKEK
                     EYSRGMDEMQWVEKLYKDCRRENRGKFEMPEFAEFWQKGYVLFPEGKPWVRHADFRED
                     PELHALGTPSGFIEIYSNKIASFGYDDCKGHPMWFEKAERSHGGKNSDKFPYWLQSVH
                     PDKRLHSQLCESKELRETYSVQGREPLYINPQDAAKHGIQDGDLVRVFNDRGQAIVGA
                     VLSDNFPTGVVRLQEGAWYSPLDESVGAIDTYGDPNTMTLDIGTSKLAQAVSANTCLV
                     NIEKFIGNAPAPNGFNGAIEVTA"
     gene            3966..4556
                     /gene="torD"
                     /locus_tag="PXA71_002088"
     CDS             3966..4556
                     /gene="torD"
                     /locus_tag="PXA71_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HDL5106164.1"
                     /translation="MTLAISREERQFIYGWFNAMLARELSDEQLNALQAGEFDDFFAY
                     LSELGFAEQVAKFQAEVTACRQLEFPRLELAADFAQLFLLEGNLSAIPYASAYLSGEA
                     LAKNLAEMDRLLGEFGLQVNRETKEPSDHLCVYLTLFDRLLAEKPLETQQQFLQNQLM
                     SWLPAWFAKAKTVKTNTGVYPALLRLFEQVLLKEQR"
     gene            4696..5385
                     /locus_tag="PXA71_002089"
     CDS             4696..5385
                     /locus_tag="PXA71_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDL5106165.1"
                     /translation="MQNNKTTYLNWYDLCVLTLILFGEAIYTSTQQYFITTEMQGNFE
                     ENLTFSNEQNYWALLTQLALLLIAMGYLKWRNFDFSRWVIRPSWLAFFSGIGLFILLS
                     LAMDLYFETLYGVYNLVYPEPFWAVLREVNISTVLYAILNGFYEEIFFLGICLAVKPE
                     YLKWAVIYSLIIRVSFHTYQGMESALGLGIWLGLIIYLLYSRSKQKNLFPFWVAHSIA
                     DILGLSLLAYF"
     gene            5543..6385
                     /locus_tag="PXA71_002090"
     CDS             5543..6385
                     /locus_tag="PXA71_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferrin-binding protein-like solute binding
                     protein"
                     /protein_id="HDL5106166.1"
                     /translation="MKSIKKLTLATLILVGLTACGSGGSGSSSNNAKSKPQVELKKTE
                     EDKKTEEDKKTEEDKKTEEDKKTEEDKKTEEDKKAEEAKKIAEAKGIGNKEYKDGLNE
                     LEEKNETGKNGEEIRTYGYLYNSHYSVVTAKMKQTLQENGRQMEPTVEVKGLKTENLP
                     TEGKATYKGEAFDSHGNNSNSVVGGELIYNVDFSSRTGSGLVKNVQGGSIELAQGEIK
                     NDSIIASAHQKYNDQAVGNGSYNIQFFGPNAEEIGGKIELNGEGEGSMKQMLGIAGTR
                     EEQK"
     gene            6434..7828
                     /locus_tag="PXA71_002091"
     CDS             6434..7828
                     /locus_tag="PXA71_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5106167.1"
                     /translation="MYKKHFLFLLVSPLVMAETVEFQQDPKEFDGQRQAVKFEQEIAK
                     KDLKLTAYLEEDNSLKGIEQHINQAILRQDWAKLERLLGDYAKQEQFDPLLLDYALAA
                     LAYAKKDYRSAAFYYQQLLKKQPDLTYPRFDLALILKEDYRYREAEQEFKQLKTDDLR
                     NAVNSALAQIEEEESWKPDFYLQYTQTNNVNNASSSPTVNVNGRIFIKESDSLPQSAK
                     GVRYGVGLSKMRNIGGNHFVGVDLGYNGVYYWNNHDYSEQSVSLTPKYSYRTATYRIG
                     VSPFIEQNWLGSSRYNYQFGSSINAVKLFERGLISGSFSHLQKRYSEQHIADRYNGYR
                     NQLTLGTQWQAVKNWRFFANLNASREITREKAQSSNKWLATIGVIYQTPSWASSVSVG
                     YGKRYFADKHYLFGYKRQDKEYQANVAVWNRSWHWQGIVPKLNFRYQKIDSNIADFYS
                     RSNKEVFMTLEKLF"
BASE COUNT         2449 a         1597 c         1880 g         2069 t
ORIGIN      
        1 ttctagaaca acttctttat atttttgatt gatatcaagg caaattgttt ctgaagataa
       61 aataattaac acttattagt taataaaaaa ggagttgaaa tgcgttcaga actattaaaa
      121 acgcttttgc tatcagggct gattttaccg ctattgatgg cgtttgccgt aggagcttac
      181 ggctttattg tgtggatgtt acaactgttt gttattggtt taccgggagc gtagaaaatg
      241 ttaggttcaa tcaaagcatt atttactcgg cctgcaacca aaatcgggtt gggagtgtta
      301 gttggtatcg gttttattgc cggagcaatt agctggcatc aatttaataa agcgatggat
      361 cataccagca ctgaagagtt ttgcgtgagt tgccactcaa tgcagcagcc gttagaggag
      421 cttaaaaaaa ccgcccactg gtcgaataaa agcggggtaa cggcaacctg ttcaagctgc
      481 cacttaccgc acgattatac cgaaaaatat gcccgcaaag tgcaggcaag ccgtgaggcg
      541 tgggcagaat tatccggcaa atataaagaa gaaggctcat ttgaaaaaca ccgcttagaa
      601 atggcagagc gtgagtgggc aagatttgcc gccaatggtt caaaagagtg taaggcttgc
      661 cacagctatg agcgaatgaa ttttgataaa atgggcgaag cagctcgtaa ggcaatgaaa
      721 ccggctgcgg agaaagatca aagttgtatg gattgccaca aaggcattgc tcaccactta
      781 ccgaaagccg atgaaaatgc actgaaatcg aagtttgatc agtttgtgaa taaatcccca
      841 aaccaaggca aatcttacta caccaaaggg aatgccgaat tatttctaga cgaaggttta
      901 agccaagcta tcgggcaatt agaaaccgcc gtgccggtgg catttgtgca agcgggcaaa
      961 aatgcggatt tggttgagct gacaatgtgg cgtaaagaga aaggtttcgg tcgcatttgg
     1021 tatcacgatt tcgggaaaaa cattaccgat gcggttctaa ccaaagagtt tatggcaaat
     1081 cagccgaaat ttgaggtgtt ggaaaccaaa gaagatccga ttaccggctt gaattggcaa
     1141 aaagtgaaac tacaagcgtg gattggcaaa gctcaattat tagacgatgt taccccaatc
     1201 tgggcgaatg cagaaaacca atacaaaacc caatgtagca cttgccacag acagcctgat
     1261 gtcgcccact tcgattccaa cagctggatc ggcttattca acggaatggt cggctttacc
     1321 aatatggata aacagaccgg caaagaggtg ctacgttatt tacaaatgca cgcctccgat
     1381 agtgaagaag cgaagcatta ataatattac tcccctcttt actaaagagg ggaattaatc
     1441 gagcgttgaa taacattctc tgtactagct cacgttttta caaataaaga aggacaagat
     1501 atgcaacaat ctcgccgtca atttttaaaa aatatgtctg tgatggctgc cgctgtcaca
     1561 atgccgaatt tcctcgtgcc tcgcaatgtg tttgcgagtg aagacctcag tcaatggaaa
     1621 gtttccggct ctcactgggg ggcaatgcgt gccaaaattg agaacggacg agtggcagaa
     1681 atcaaaccgt tcgagtttga taaacacccg accgaaatgc tcaacggcat taaaggctta
     1741 atttacagcg attcccgtat ccgctacccg atggtgcgtt tagattggct caaaaaccgc
     1801 cataacagca acaccgcaca gcgtggcgat aaccgctttg tgcgggtaac gtgggacgaa
     1861 gccctcgacc tgttctacca agagttagaa cgggtacaaa aagagtacgg cccgtgggcg
     1921 ttacacaccg ccaatgtggg ctggcgttca accggtcaat tccacagttg cggtaaccat
     1981 atgatccgag cgattgcgat gcacggtaac agtgtcggca cggcaggcga ctattctacc
     2041 ggtgcagggc agaccattct gccgtatgtg ctgggttcaa ccgaagtcta ttcgcagggc
     2101 acgtcttggg aaatcatctt aaaagagagc gaaaacatca ttttctgggc aagcgacccg
     2161 gtgaagaacc tgcaagtggg ttggaactgc gaaacccacg aagcctatgc ctacttggaa
     2221 aaactgaaag agaaagtggc agcaaaaggc gtgaatgtga tctgtgttga tccggtgaaa
     2281 agcaaaaccc agaatttctt aggttgcgaa cagcagtaca tcaatccaca aaccgatgtg
     2341 ccgtttatgt tggcacttgc ccacacgctc tacaccgaga acctgtacga caaaaaattc
     2401 ttggatatgt acacggtcgg ctttgaaaaa ttcctgccgt atctgttagg cgaaaccgaa
     2461 gacaaagtgg cgaaaacccc ggaatgggcg gctgaaattt gtggtatttc cgccgacaaa
     2521 atccgtgaat ttgcccgaat gcttgccggc aaacgcaccc aatttatttt cggctgggca
     2581 attcaacgcc aacaacacgg cgaacaaccg tactggatgg gagcggtgct agcctcaatg
     2641 ttagggcaaa tcggcttgga aggcggcggc atcagctatg ctcaccatta cagctctatc
     2701 ggtattcctg aatccggtgc ggcaatgccg ggggcgttcc cgctcaatat tgatgagggg
     2761 caaaccccga aatacgacaa caaagattac aaaggctaca gcgacaccat tccggtggct
     2821 cgtatgaccg acagcttgct ccacgccggc gaaaccattg attacaacgg caaaaaagtg
     2881 acttacgctc cgttcaaaat ggcgattttc accggctgta accaatggca ccgccattcc
     2941 gagcggaaca aaatgaaaca ggcgttccaa aaactggaaa ccattgtttc gatcaactac
     3001 agttggacgg caacctgccg cttctccgac atcgtgctgc cggcctgtac cccatttgaa
     3061 cgcaacgata ttgacgccta cggctcatac agcaaccgtg gcgtgattgc aatgcacaag
     3121 ctggttgatc cactctacga ctctcgctcc gactttgaga ttttccgaga tctctgccgc
     3181 cgtttcggta aagagaaaga gtacagccgt ggaatggacg aaatgcagtg ggtagaaaaa
     3241 ctctacaaag attgtcgccg tgaaaacaga ggtaaatttg aaatgccgga gtttgctgaa
     3301 ttttggcaaa aaggctatgt gctgttccca gagggcaaac cttgggttcg ccacgccgat
     3361 ttccgtgaag atccggaatt gcacgcactt ggcacaccgt ccggctttat cgaaatttac
     3421 agcaacaaaa tcgcctcttt cggctatgac gattgcaaag gtcacccaat gtggtttgag
     3481 aaagccgaac gttcacacgg cggtaaaaat tccgacaaat tcccgtactg gttgcaatca
     3541 gttcacccgg acaaacgctt acactctcaa ctttgtgaat cgaaagaact gcgtgaaact
     3601 tacagcgtgc aagggcgtga accgctttac attaacccac aagatgccgc caaacacggc
     3661 attcaagacg gagatttagt gcgagtgttt aacgaccgtg ggcaagcgat tgtgggggcg
     3721 gtgctttccg acaacttccc gaccggcgta gtgcgtttac aagaaggggc ttggtattca
     3781 ccccttgacg aaagcgtggg ggcgattgac acctatggcg acccgaacac aatgaccctc
     3841 gacatcggca cgtccaagtt ggcacaagcg gtttccgcca acacttgctt ggtgaacatc
     3901 gagaaattta tcggcaatgc cccggctccg aatggcttta acggtgcgat tgaggtaacg
     3961 gcttaatgac gttggcaatc agtcgtgaag aacggcaatt tatctatggc tggtttaacg
     4021 caatgctcgc ccgagaactt tcggacgagc agttaaatgc cttacaagcg ggcgaatttg
     4081 acgatttttt tgcatacctc agcgaattgg gttttgccga acaggttgca aaatttcaag
     4141 cagaagtgac cgcttgtagg cagctggaat ttcctcgtct agaactggcg gctgactttg
     4201 cccaactgtt tttattggaa ggcaatctca gtgccattcc ttacgcctcc gcctatttaa
     4261 gcggcgaagc gttagcgaaa aatttggcgg aaatggacag actgctgggc gaatttgggc
     4321 tgcaagttaa tcgagaaacc aaagagccga gcgatcacct ttgcgtttat ctcacccttt
     4381 ttgaccgctt gcttgctgaa aaaccgttgg aaacgcaaca gcaatttctg caaaaccaac
     4441 tgatgagctg gctccctgcg tggttcgcca aagccaaaac cgtcaaaact aacaccggcg
     4501 tttatccggc gttgctaagg ttgtttgaac aggtgttgct gaaggaacaa agataaagtt
     4561 atttatttga gaatgatttg tattgagcga attgagaaag gaagttaaaa tttcaacttc
     4621 cttttttatt ggctggattt atccacatta ttacaagcgg ttatttttat aaaaaaattt
     4681 acaaaggaga cattaatgca aaataataaa accacctacc taaattggta cgatttatgc
     4741 gtgctaaccc tgatcctgtt tggtgaggca atttatacct caacccagca atatttcatc
     4801 accaccgaaa tgcaaggtaa ttttgaagaa aatttaacct tttcaaatga acaaaattat
     4861 tgggcattac tgacgcaact tgcattgttg ctgattgcaa tgggctatct aaaatggcgg
     4921 aattttgatt tcagccgttg ggtgattcgt ccctcttggc tggctttttt tagcggtatc
     4981 gggttgttta tcttgctctc gttagcgatg gatctctatt ttgaaacatt atatggtgtt
     5041 tacaacctag tgtatccgga gccattttgg gcagtattga gagaagtgaa tatttctacc
     5101 gtgctgtatg cgattttaaa cggcttttat gaagaaatct ttttcctcgg tatttgcttg
     5161 gcggttaaac ctgaatattt aaaatgggcg gtgatttatt cactgattat tcgggtgagt
     5221 tttcatacct atcaaggaat ggaaagtgcg ttaggattag gaatttggct cggtttaatt
     5281 atttatttgc tctactcacg ctcaaagcag aaaaacctat ttccattttg ggtggcacac
     5341 agtattgcgg atattttggg gctgagtttg ttggcttatt tttagttaaa ggtgctacat
     5401 ttaagcggca taagttgata gagctgatcg taccagtagc ataaaaacat tattatttgt
     5461 atggaaaggt gcttttaggt tacaatataa ccgatagtta ttggttataa ctaaaaatta
     5521 tttttaattt aacggagcaa atatgaagag tatcaaaaaa ttaaccctag ccactttgat
     5581 tttagtgggt ttaactgctt gtggtagcgg tggttcaggt agcagttcta ataatgctaa
     5641 atcgaaacca caagttgagt taaaaaaaac tgaagaggat aaaaaaactg aagaggataa
     5701 aaaaactgaa gaggataaaa aaactgaaga ggataaaaaa actgaagagg ataaaaaaac
     5761 tgaagaggat aaaaaggctg aagaagcaaa aaaaattgca gaggcaaaag gaattggcaa
     5821 taaagaatat aaagatggat taaatgagtt agaagaaaaa aatgaaacag gtaaaaacgg
     5881 agaagagatt cgaacctatg gttatctcta taacagccat tattccgttg taactgccaa
     5941 aatgaaacaa actttacagg aaaatggtcg tcaaatggaa cctacggttg aagtgaaagg
     6001 gcttaaaact gagaatttac cgacagaggg caaagcaaca tataaaggag aagcctttga
     6061 ttctcacggt aataacagca attcagtagt aggtggagaa ttaatctata atgttgattt
     6121 ctctagtcgt accggatcag gtctagttaa aaatgtacag ggcggttcta tcgagttagc
     6181 acaaggcgaa ataaaaaatg atagtattat agcttctgct caccaaaagt ataatgatca
     6241 ggctgttgga aatggtagtt acaatatcca attctttggt ccaaatgcag aagaaattgg
     6301 agggaaaatt gagcttaatg gtgagggcga aggctcaatg aagcagatgt taggtattgc
     6361 aggaacccga gaagaacaaa aataacattt aatacccaat gccgtttaat cttaaacggc
     6421 attctttttt actatgtata aaaaacattt tctattttta cttgtttcgc ctttagtaat
     6481 ggcggaaacg gttgagtttc agcaagatcc caaagagttt gatgggcagc gacaagcggt
     6541 taaatttgag caagaaattg caaaaaagga tttaaaatta accgcttact tggaggaaga
     6601 taattctctt aaaggtattg aacagcacat taaccaagcg attcttagac aagattgggc
     6661 gaagctggaa aggctgcttg gcgattatgc aaagcaagag caatttgatc cgctactttt
     6721 agactatgct ttggcggcat tggcttatgc taaaaaagat tatcgctctg cggcgtttta
     6781 ttatcagcag ttgctgaaaa aacagcctga tttaacctac cctcgttttg atttggctct
     6841 gattttaaaa gaggattatc gctacaggga agcagagcaa gaatttaagc aactcaaaac
     6901 cgatgattta cgcaatgcgg tgaacagtgc gttggctcaa atagaggagg aagagagctg
     6961 gaagccggat ttttatttgc aatatactca aaccaacaat gtgaataatg cttcttcgtc
     7021 gccaacggta aatgtaaacg ggcggatttt tattaaagaa tcagacagct tgccgcagtc
     7081 ggcaaaaggc gtaagatatg gcgttggctt gagtaaaatg cgaaatatcg gcggtaatca
     7141 ttttgtggga gtcgatcttg gctataacgg cgtttattac tggaataacc acgattatag
     7201 cgaacagtcg gtctcactaa caccaaaata tagctacaga acggcaactt atcgtatcgg
     7261 ggtttcgccc tttattgagc agaattggct gggtagctca cggtataact atcaatttgg
     7321 tagcagtatc aatgctgtta aactttttga acgagggctg atttccggct cattcagcca
     7381 tctgcaaaaa cgttatagtg aacagcatat tgccgaccgt tacaatggtt atcgcaacca
     7441 actcacgcta ggtacgcaat ggcaagcggt caaaaattgg cgattttttg caaatcttaa
     7501 cgctagccgt gaaattaccc gtgagaaagc tcaatcttcc aataagtggc tggcgaccat
     7561 tggcgtaatt taccaaaccc caagctgggc aagttcggta agtgtcggat atggcaagcg
     7621 ttattttgct gataaacatt atctgtttgg ctataaacgc caagataagg aatatcaagc
     7681 gaatgtggcg gtgtggaatc gaagttggca ctggcaaggg attgtgccga aattgaattt
     7741 ccgttatcaa aaaatcgata gcaatattgc cgatttctac tctcgtagca ataaagaagt
     7801 ctttatgacc ttagagaaac tattttaagg ctgtgtatga atgtcgggga gaaaaatttt
     7861 ctccccgata tttatgtgta gaagatcaga cttgatctga caattcactc taaaaagtga
     7921 gagtttcccg tttagaatat gagtgtcaaa aatcaatcta aacaaaaagg aaactctcat
     7981 gttttattct aacaa
//
LOCUS       DANLRW010000107         7887 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.108, whole genome shotgun sequence.
ACCESSION   DANLRW010000107 DANLRW010000000
VERSION     DANLRW010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7887
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.108"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            58..4254
                     /locus_tag="PXA71_002092"
     CDS             58..4254
                     /locus_tag="PXA71_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5106168.1"
                     /translation="MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENK
                     GPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGY
                     KNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNA
                     GTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPD
                     HWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNR
                     SAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSS
                     IANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGA
                     GIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQ
                     GRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKH
                     ARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLK
                     GNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNG
                     ILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNK
                     HDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTP
                     SCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQAD
                     QTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKG
                     NGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGN
                     KASISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTN
                     VPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSR
                     RLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLI
                     KASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQS
                     DKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEF
                     NEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGAN
                     IGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLD
                     DWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGF
                     INGNEIKKQHFAGVKLGYSW"
     gene            complement(4309..5403)
                     /gene="mobA"
                     /locus_tag="PXA71_002093"
     CDS             complement(4309..5403)
                     /gene="mobA"
                     /locus_tag="PXA71_002093"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HDL5106169.1"
                     /translation="MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILAR
                     LSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFV
                     PCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQ
                     QQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLL
                     EKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTET
                     KQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATD
                     YPLERENWLDINNIGGIADFIKNWLENKAS"
     gene            5490..5759
                     /locus_tag="PXA71_002094"
     CDS             5490..5759
                     /locus_tag="PXA71_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1040 family protein"
                     /protein_id="HDL5106170.1"
                     /translation="MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKA
                     LSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND"
     gene            5823..6461
                     /locus_tag="PXA71_002095"
     CDS             5823..6461
                     /locus_tag="PXA71_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDL5106171.1"
                     /translation="MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQ
                     KEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWAL
                     AMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNK
                     QVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK"
     gene            6545..7321
                     /locus_tag="PXA71_002096"
     CDS             6545..7321
                     /locus_tag="PXA71_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDL5106172.1"
                     /translation="MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAE
                     HHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRV
                     ELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNSVSAYPAQGLNVPFYI
                     LGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAI
                     AAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKV"
     gene            7331..7585
                     /locus_tag="PXA71_002097"
     CDS             7331..7585
                     /locus_tag="PXA71_002097"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase"
                     /protein_id="HDL5106173.1"
                     /translation="MKAEIVPHFGPVSFQQNALYNQEKPVVRQMTACSLIGSRESIEQ
                     QLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV"
     gene            7587..7880
                     /locus_tag="PXA71_002098"
     CDS             7587..7880
                     /locus_tag="PXA71_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcZ/YiiS family protein"
                     /protein_id="HDL5106174.1"
                     /translation="MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAV
                     QAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR"
BASE COUNT         2637 a         1559 c         1484 g         2207 t
ORIGIN      
        1 gttataagac agaatagcca gaatttttta ttacttataa ggataaactt ctcatttatg
       61 aagaccaaaa catttactcg ttcttatctt gcttcttttg taacaatcgt attaagttta
      121 cctgctgtag catctgttgt acgtaatgat gtggactatc aatacttccg cgattttgcc
      181 gaaaataaag gaccattttc agttggttca atgaatattg atattaaaga caacaatgga
      241 caacttgtag gcacgatgct tcataattta ccaatggttg attttagtgc tatggtaaga
      301 ggtggatatt ctactttaat tgcaccacaa tatttagtta gtgttgcaca taatactgga
      361 tataaaaatg ttcaatttgg tgctgcaggt tataaccctg attcacatca ctatacttat
      421 aaaattgttg accgcaatga ttatgaaaag gttcaaggag ggttgcaccc agactatcat
      481 actcctcgat taaataaatt agtaacagaa gttgtgcctg ccgcagtcac caatgcaggt
      541 acatctatta aaccctactt aaatgaagaa cgcttcccta tgtttcttcg tgctggttca
      601 gggacacaag cgctaagagg aaaagaaagt aataaaacaa ctggaatcgc tggtgcttat
      661 gaatatctta ctggcggtac cacattacaa ttatctaaaa gctcccctga tcactggtta
      721 gattattcaa gtaaccttta tcaagtaagc tatggaccac tttcaaccta tgcactacct
      781 ggtgatagtg gttcaggttc ttacgcctat gatatgaacg aaaaacgatg ggtattagtt
      841 ggtgtgctca atttctataa tggtatggat aatcaattca accgctctgc gattatccgt
      901 aaagatttcc acgagaaaaa atttgccgaa gatattgcag gaacaatcaa taataccgta
      961 caaaatgcac aattcaattg gactgctcaa ggtaaatcca gctctcttag tcaatcaaat
     1021 aatgtgcaaa aactcaacgt tgatctaaaa gatagtagca ttgcaaacca aaacacttct
     1081 ctgccacaag aaaatcacgg taaaaccatt aattttaatg gtaaagatgc aactattgta
     1141 ctaaaacagg atattgacca aggtgcaggt gcattaaatc tgaacgctaa tctcactatt
     1201 cgtcctgaaa cagaccaaac ttggcaaggt gcaggtatta tcgtcggtaa agataaaaaa
     1261 gtgaattggc aagtaaaaaa tccacaaggc gatcgtttat ctaaactcgg ggaaggaaca
     1321 ctctatgtaa atggacgtgg acagaatctt ggcgatatca gtgtaggtga tggtattgta
     1381 atacttaacc agcaagccga tcaccaagga agaaaacagg cctttaatac agtaggaatc
     1441 gtaagtggtc gccccactgt tgtgctaggt agtgcagatc aagttaatcc cgataatatt
     1501 tactttggat ttcgcggagg tcgtttagac ctaaacggta acagcatcgc ctttaaacgt
     1561 attcaaaaca gcgataaaca tgctcgtatt gtaaaccaca atcgcgatca catttctacc
     1621 ttaataatac aaggccaaga tcctctcact agtaatgatc ttatatgggg aaaatgggca
     1681 agtaatagcc cagcagacat ttacgaatat accaatcctt atcaaaataa acgcaaagat
     1741 tacttccgtc tgaaaggtaa ttcgagagta tattatccaa cgaatgctac aagtaacgat
     1801 cactgggaat ttctttccag taaccgcgag caagcaatac agaaaatcct agatgccaaa
     1861 aacttaagac agcgctatga cacgtttaat ggttttatag gggaagatgc ttccaataaa
     1921 actaatggga tattaaatgt cgtgtttgat acaaaaacag aagtaaatac agaacaagat
     1981 aaattaaaga atatctacac aatgtcggga ggatttaacc ttaatggtga actcaccctt
     2041 aaaggtggta cattgttgct ttctggtcac ccaacgccac acgcttatga tattaagaat
     2101 aagcatgatg ttgtgcgtga aaacgattgg caagacagcc attttactgc taaaaatatc
     2161 acggtaaata aaatggcaca actctatatc gggagaaatg tcaatgaagt aaatagtcac
     2221 tttactgcga ctgataaagc caaactcaat ttaggattta ttaatcgttc aacgccaagt
     2281 tgctatgatt ctgaatacac aggcactaca cattgtgaag tgcaagcggt catttccgat
     2341 aatatttttg caaatctagc aacaaccgcc attaaaggta atgttaaatt acaaaaccat
     2401 agccaattaa atttaggcaa agcaaacctc actggttctg tacaagctga tcaaacaact
     2461 catatcactt tagcaaatca cagtcactgg ttaaacaatg gtacgagcca gattgggcat
     2521 cttacaatgg aaaaagggtc gatccttagc ctaaacgata aatttgctac cacggaaatc
     2581 ccagtccgat tcaacaagat gatcatccaa ggtaatctaa aaggtaatgg acgaattaac
     2641 tataccgcaa atttagccaa gggcgaatct gatcatctcc aagttgacgg tattgctgaa
     2701 ggaaattttg tccttgccgt tagaaatagc acaactgaag caaatccaaa aagctcatta
     2761 aacctactaa gcttaaaaaa tagcaaccaa gaaggcaata aagcttctat ttctctagaa
     2821 aataattatg ttgatctagg tacttatcgt tatgtattag aaaatcgtaa tcacaattac
     2881 catttattta atccattaat accaaattca acctctaaag agatgaatgc tacatctgta
     2941 tcctctattc caaaaaagga atctgttact aatgttccta ctttagataa gaaagaaact
     3001 gaacaaaatc ttactcaact acaaaaagat ttttcagcac accaattaga aaatcaaaaa
     3061 gcaaaacaat ctatgataaa tgctcaatct gagctaagac gactcaattc acaactgaat
     3121 gtattgcaaa aatatgtgaa ttctcgtcgc ttaggttact atactcagca ggcagtttta
     3181 gaacaaatta gcattattca aaataaaatt aaacaaacac aaacaatatt taatgacgct
     3241 aatgcaactg taaaactcac agatcaaaag ctagaagaag ccaaattagc tctaggctct
     3301 gtaaacgatc ttgtattaat aaaagcctct gctccagcaa tgcaagcaac taatcaagat
     3361 acgagtatga tgaatattat tcaagcagat tggataagcc aatacgctaa cacagcactt
     3421 tctgaactct cggcacaggc taattctgct ctgcaaatca gtaatagctt agatcgccaa
     3481 ctcttcaaac aaagcgataa attcaacgta tggagcagcg tcgaacatca gaaaaccgag
     3541 cataaatcag atttataccg cccgtataaa caacaaacca acctgaccca actgggcata
     3601 caaatgccga tagataacgg tttaatgttt ggagttgcat tatctaaaaa ccacgctaac
     3661 gcggaattta acgagggtgt aaacggtaaa tcgaatctac taatggcaag cctatatggt
     3721 aagtggcaat ctcaacaagg cacttttatc agccttgatg gcagctacgg taaagcaaaa
     3781 aaccaactct acctatttgg tgaaaaccac tttacccgcc gaatttcctc tattggtgct
     3841 aacattggac atcaatttga cctcgcagga gttcaaattc agccaacaat aggagcaaga
     3901 tactaccatt tcagcggcca agactataca ctaggaggag cgaaaatcag ctcaccaaat
     3961 acccacttta tgacatatca agcgggtcta aaagctagta aaaccttttc attggatgac
     4021 tggaaagttg aaccaagcat tacaacccac tatgtggatg caagtaacaa acgcttagca
     4081 gtaaacgtca ataataacaa tatcaaccaa cgtttcggtc gctatctgaa aaccgaagct
     4141 ggtatccgat ttgaacataa ccaatggcaa ttcgacttac acgctggttt cattaacggc
     4201 aacgaaatca aaaaacaaca ttttgctggt gttaagctag gatatagctg gtaagaaaaa
     4261 gcccctagaa ctatttctag gggctttttc tactcttaaa aagagtatct aacttgcctt
     4321 attttctaac caattcttaa taaaatctgc tattccccca atattattaa tatccaacca
     4381 attttctctc tcaagcgggt aatccgttgc ggtggcaatc gtccattggt ctagctctgg
     4441 caatggtttt tcaatccctt tgcggtggag ctgaattttt ggcaaggttt cgtgtttaaa
     4501 gccttctacg aaaacgagat caacctcttg cgggttgaat tttgcaatta attgagaaaa
     4561 ttcgaccgct tgtttggttt ctgtcattaa tgcccaacgt tcatcgcaca caatcattgt
     4621 cgggtttgct cctgcttcac gtaggcggta gctgtctttg ccttttttat ctacatcaac
     4681 gttatggtgg gaatgtttaa tcagcccaac ccgaataccg caagcggtca attttgggat
     4741 taatttttcc aataaggtgg ttttacctgt gccgctgtag cctgtaattg caaggttttt
     4801 tacagggaat tggcttactc ggcttaaatc ttccaatgta ttcacgttgg tgaatgccga
     4861 tttttgttcg gaaaaatcaa ctgccacgct tttttgtgat tggaagaacg caagcaattg
     4921 ctgttggttt gagcctaaat aggctttcaa atcttcttgt accgaacgat gaatcaacgc
     4981 aaaagtggga tgtggacgct caccatcatg ggcatatgca atttgtacgt tatttatccg
     5041 caaagcagtt tttaattttt gcaataacag ctcaggcata aagggcgtat cgcaaggcac
     5101 aaaaagcaaa tagtcacttt caatttgctc aaatcctgcc agcattccac tgagtggacc
     5161 ttgaaaatca ggcaagctat cttgatagta agaaaaagca ggataaagct gctgatattg
     5221 ctcaatagaa cgattgacat taagccaaat gtcactaact tgtggtgaaa gtcgggctaa
     5281 aatgtgtgaa ataagcggtt ttccttcaaa aagttgtaac cctttttcta ccccattcat
     5341 tcgacgagct aaaccgcccg ctaaaatcac ggctgaaatg cgttcttcta ttgttttact
     5401 cacagcttta tcccttaaaa ttttgcaaaa ataagagtaa aagtatatta tttcgtttaa
     5461 tttccaacaa gttttttaag gggtaaaaga tgaaatgcga acgtttagaa gagttattag
     5521 agttacttgg cgaacattgg cgtaaaaatc ctgacttaca cctcattgat attttgcagc
     5581 agctttcagt tgaagtgggc gagcctgata atttcaaagc gttaagcgat gaagtgttaa
     5641 tctatcagct taaaatgcga aatgcaggca aatttgagcc tattcccggc ataaaaaaag
     5701 attatgaaga tgattttaaa acggctttat tgcgagctcg tggaatttta aacgattaag
     5761 attgtcttat ccgttagcta gtttagcatt tattatttat caacattttt gaaggaatca
     5821 ttatgaaaaa attggcatta aaaacggcat ttgttgcact ttctgccctt tttacattta
     5881 actcaacggc aatcgctgct gatccaaccg caggcaaaga atatatcgaa gtgcgtaaag
     5941 caccttctgc acaaaaagaa gtggtggaat ttttctcatt ctactgccca cactgttatg
     6001 attttgaatt aagctacaaa atcccaagcc aaatcaaaga aaaattacca agcgatagca
     6061 aattagtgca atatcacgtt aatttcttag gtcgccaatc tgaagattta actcgtgctt
     6121 gggcattagc aatggcatta ggtgcggaag ataaagtaaa aaccgcatta tttgaaggtg
     6181 ctcaaaaaga cgcattcaaa tcaatggacg atattcgctc tgtattctta gcaaacggca
     6241 ttacagctga acagtttgat agcggtatta atagctttgc ggtaaatggc ttagtgaata
     6301 aacaagttca attagcggaa gacttccaaa ttcgtggtgt gcctgcattc ttcgtaaatg
     6361 gtcaatacca actcaactta gaaggctttg cagattcttc atcaacgaat gatttcatca
     6421 aacgttatgt tgatgcggtt gtgttcttaa gcaagaaata accccttaaa atagttaggg
     6481 tttttacaat gctgagtagg taaatcctat tcagcatttt ttatatgcaa actcggagaa
     6541 caaaatgaca aagttatcta tcctaaacct tgtacctatt cgtgaagggc aaactgccaa
     6601 acaagcggtc gattctatgg tgaaattagc aaaacacgcg gaaagtatcg gcattgaacg
     6661 ctattggatt gcagagcacc acaatatgaa aaaccttgcc agctcggcaa cacagctcct
     6721 cattcagcat gccctttctc acactgaaaa attaagagtg ggatcaggtg gcgtgatgtt
     6781 gcctaaccat agtccttata ttgtggcaga gcaatacggt acgcttgaaa cactctaccc
     6841 taaccgtgta gaacttgggc ttgggcgagc accaggcacc gatatgcgaa ccgctaccgc
     6901 tttacgccgt aatgcacaaa gtctgccatt tcctgatgaa atcagcgaac taaaaggtta
     6961 ttttgaaggc acaaattctg tgtctgccta ccctgcacag gggttgaatg tgccgtttta
     7021 tattttaggc tcaagccctg aaagtgccta tttagcagca gaacgtggct tgccttatgc
     7081 ctttgcttca catttcgctc ctcgttttat ggacgatgcg gtgcgaattt atcgcacaca
     7141 ctttaagccg tctgaagtgt tagataaacc ctatgtgatt ttaggtgtga atgcgattgc
     7201 ggcagaaacc gaccaagagg cagaacagct tgctaccact cagactcagt ttttcttaaa
     7261 tgttgttacc aatgcccaaa actatttaca accgcccgtc gaatccgatg ataaagtgtg
     7321 aaaaaatttt gtgaaagcgg aaatcgtacc gcatttcggg cctgtttcgt tccaacaaaa
     7381 tgcgttatac aaccaagaga aacccgttgt tcgccaaatg actgcttgtt cacttatcgg
     7441 tagccgagag agcattgaac aacagctcaa gtcattaaaa gcacgcattg aaattgatga
     7501 aattatggcg gtaagctaca ttttcgatga gcaaaaacag catcaatcct atacttggtt
     7561 aaaagagatt gcagataagg tgtgatatga gcaaaacaat gcaacaaaaa gccgctgatg
     7621 cacataatat gtgtaagcta aaaggcgact ctatgttaga taactcagac cgccaaattg
     7681 cctttgaagc agtgtatgat agtgaagaaa tagctgtaca agcggtcgaa tttttcacac
     7741 aaaaagcaaa atcggtagaa accgagcctt gcgacattca aagtgaaatc acacccatta
     7801 tagatggctt tctgatgaaa atgtggataa ctttcagttg ccaagcagaa gtaatcttat
     7861 ttcaaatggc ggtgagatag atataaa
//
LOCUS       DANLRW010000108         7820 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.109, whole genome shotgun sequence.
ACCESSION   DANLRW010000108 DANLRW010000000
VERSION     DANLRW010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7820
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.109"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            190..762
                     /locus_tag="PXA71_002099"
     CDS             190..762
                     /locus_tag="PXA71_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDL5106175.1"
                     /translation="MSRRSEPKEEMVNRILSATESLIVQEGLQNLSMRSIAKEAGIAS
                     GTLYLYFKTKDDLLHSLAAQLLECYNGYMHFEFKPEMALFEQYKALVNKKWQFLIERL
                     DLVKQFQAVIGIDELIRETIADETSFWNKLILEGKKQRIIADLSNELLYGLSIGTLVD
                     IQYLQNLNQENQFDGYLDEIILRTWKAITF"
     gene            793..1998
                     /locus_tag="PXA71_002100"
     CDS             793..1998
                     /locus_tag="PXA71_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDL5106176.1"
                     /translation="MTTETQKLGKGRKFLIVLTLLIVLIVFAAIVGLQKIGAMKKAEA
                     AANMPEAVSEVTAMQVTTQEWTPTISAVGYIRPNQGAMLSAETSGVVSRVLVTSGQRV
                     KKGDLLVEFDSSVEIANLRASEAQLPNAKANLERYRNLIASNSASKAEFDNAQSTYNQ
                     LLANIEALRATIKRRQIYAPFSGLAGIVNVNVGQYITMGTEIVRVEDQSSMKVRFTLP
                     QTNLEQISIGQKVTAVIDALPAQTFPAKIVAIDPAVDRLTGLINVEAVIEEGQEKLLS
                     GMFARLNVALPTETGQIVVPQISIAYTMYGETVYVLQPLSDEDKEMVNKMAVQNPSLD
                     VNKMYRAKQMEVKTADRKGNYSQLSKGVKAGDLIVTGGLQRLSNNALVKVSDTEAVGI
                     TTPAKNSKL"
     gene            2012..5179
                     /locus_tag="PXA71_002101"
     CDS             2012..5179
                     /locus_tag="PXA71_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HDL5106177.1"
                     /translation="MKFTDIFIKRPVLAVCISLLITILGLQAIEKLQVREYPEMTVSI
                     VTVSVNYSGADARLMQTLVTSQLEEAVAQADNIDYMTSSSSPSTTTVTAKMKLNTDPN
                     AALSDISAKVNAVRSNLPSGIDDPSIRVSTGSNDALMYIRFVSDELNTSQVTDYINRV
                     VKPQFFTVNGVSSVDVYGSVFGLRIWLDPDKMASNNLSGAAVLSALSANNLQTAAGNS
                     NGYYTVYRNKVLSTTPSVTELEEVTVSTTKDGKTIKLKDIATVELDKYQDAARATVGG
                     KDAVVLAVSVAATANSLTVAKDIYPMFEQVLKNLPSTIQGDIVYDKTIAIDSSIKEVI
                     KTIGEATVIVLVVIILFLGSLRAMIVPVITIPISLIGVLFFLQMFGFSINLLTLLALV
                     LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLGAVYSPMAL
                     MTGVTGTLFKEFALTLAGAVFISGIAALTLSPMMSSRILKEHKEGEESAFARVVHRSL
                     DKMTSCYTNMLSGIMAVRGFVLFFAVLIFASLPMLFGSLSSEVAPTEDRGFVVGISNG
                     PSNTNLDYTEAALAQFNQEVTKLPEVSSLMTVSGFNGANSALSIIALKDWNDRSRERA
                     AISNDVAAIGKKVVGMDVNAIAFPEISTGENGLPFSLVITTADSYEKLAIVASEFLKK
                     AQTSGQFFFANLDLKFDTVTMNMKFDREKMGAYGVTMQQVSGTLGAFLSGAIITRVDI
                     DSRAYPIVSQAVRNDRLNPEDLMNYYVTTATGQSIPLGSFVTMELKTSPSSLPRMSQL
                     NSATIGGVVSGSIGDAVNWAKAELDRTLPSGYQYDFRGESRQFVQEGNAMAMTFALAV
                     IIIYLVLAIQFESWRDPLVILVSVPLAVSGALLVMNIPTAMKGLFMGIAAGTGSKDMM
                     AFANGIWTAGYTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLLHGKSRYEAIFHAA
                     TIRLRPIMMTTAAMIAGLIPLLFAVGAGAIARFSMGMVIVAGLAIGTLFTLFILPVIY
                     TFLGQEHKPLREFDEEKYFPTTKEA"
     gene            5407..6870
                     /gene="guaB"
                     /locus_tag="PXA71_002102"
     CDS             5407..6870
                     /gene="guaB"
                     /locus_tag="PXA71_002102"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005725353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDL5106178.1"
                     /translation="MLRIKQEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTETKLAISLAQEGGIGFIHKNMSIERQADRVRKVKKFESGIVSEPVTISP
                     DMTLAELAELVKKNGFAGYPVIDENQNLVGIITGRDTRFVTDLSKTVREFMTPKDRLV
                     TVKENASREEIFHLMHEHRVEKVLVVNNEFQLKGMITLKDYQKAESKPNACKDEFGRL
                     RVGAAVGAGPGNEERIDALVKAGVDVLLIDSSHGHSEGVLQRVRETRAKYPDLPIVAG
                     NIATAEGAIALADAGASAVKVGIGPGSICTTRIVTGVGVPQITAIAEAAAALKERGIP
                     VIADGGIRYSGDISKAIAAGASCVMVGSMFAGTEEAPGEIELYQGRAFKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRIAYKGYLKEIIHQQMGGLRSCMGLTGCATI
                     EELRTKAEFVRISGAGIKESHVHDVTITKEAPNYRMG"
     gene            6991..7662
                     /locus_tag="PXA71_002103"
     CDS             6991..7662
                     /locus_tag="PXA71_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HDL5106179.1"
                     /translation="MLQAIIFDMDGVIVDTEYLEFSLQKQFIEDIKEHSRPITLEQQS
                     EVVGKCLKEIPVIIKKLSESSLPIEEIRARYYAFFQDLFSKVDFKTIFRADIQQIIQF
                     AKQNQIKLAVASSSALSHIENILTVCGIKDEFDLIVSGEQFEHSKPDPTIYRYTCEKL
                     GVEPQNAVAIEDSYYGMLAAKTAGLTVIGYEEKRILIDQSLADYMGKDMKEILKILQK
                     CNTPS"
BASE COUNT         2339 a         1443 c         1769 g         2269 t
ORIGIN      
        1 taataataaa gtagcgttaa gcgttattgt ttgagtgatt tttgcaaagt tttagccaaa
       61 aatgaccgct tgttcaataa atgaggaatt ttgcaactat tttattttaa tttgataggt
      121 gttttctgct ttcttttttc ataaaaaaag ctataatgaa cggctgttca ttataggtaa
      181 ggagataaaa tgtctaggcg aagcgagcca aaagaagaga tggtaaaccg tattttatcg
      241 gcaaccgagt cgctgattgt gcaagaaggt ttgcaaaacc tttcaatgcg tagtattgca
      301 aaagaagcag ggatcgcttc cggtacatta tatctttact ttaaaaccaa agatgattta
      361 ttgcactcat tggctgccca attactcgaa tgttataacg gttatatgca ttttgagttt
      421 aagcctgaaa tggcgttatt tgagcaatat aaagcgttgg tcaataaaaa atggcagttt
      481 ttaatcgagc gtttagattt ggtaaaacag tttcaagcgg tgatagggat tgatgaattg
      541 attcgggaaa ccatagctga tgaaacttcc ttttggaata aattaatttt agaagggaaa
      601 aagcaaagga ttattgctga tctatctaat gagttgcttt atggattaag catcggcaca
      661 ttggtggata tccaatatct gcaaaatctg aatcaagaaa atcagtttga tggatattta
      721 gacgagatta ttttacgcac ttggaaagca atcacttttt aagtttcttt ttattagttt
      781 tatggagaat gtatgacaac ggaaacacag aagctgggta aaggcagaaa gtttttaatt
      841 gtactcacat tgttaatcgt attgattgtg tttgctgcaa tcgtagggtt acaaaaaatc
      901 ggggcaatga aaaaagccga agcagcggca aatatgccgg aggcggtgag cgaagttact
      961 gctatgcaag tgacgaccca agaatggaca ccaaccattt ctgcggtcgg ttatattcgc
     1021 ccaaatcaag gggcaatgtt aagtgctgaa acttcaggcg tggttagccg tgttttggtc
     1081 acttcaggac agcgtgtgaa aaaaggtgat ctgttagtag aatttgacag cagtgttgaa
     1141 attgctaact tgagagcctc tgaagcgcaa ttaccgaatg ccaaagcaaa tttagagcgt
     1201 taccgtaatc tgattgcctc aaacagtgct tctaaagccg agtttgataa tgctcaatct
     1261 acctacaacc aattattagc caatatcgag gcattgcgtg ctacgattaa acgccgtcaa
     1321 atttatgctc cgtttagtgg tttagcgggt atcgtgaatg tgaatgttgg gcaatacatt
     1381 acaatgggta cggaaattgt gcgtgtggaa gatcaatctt caatgaaagt acgttttacc
     1441 ttgccgcaaa ctaatttaga gcaaatctcg attgggcaaa aagtgacagc cgtaattgat
     1501 gcgttaccgg cacaaacctt cccagctaaa attgtggcta ttgatccggc tgtggatcgt
     1561 ttaaccggct taattaatgt ggaagcggtg attgaagaag ggcaggaaaa attgctttca
     1621 ggtatgtttg cccgcttaaa tgttgcttta ccaacagaaa ccggacaaat cgtcgtacca
     1681 caaatttcta tcgcttacac tatgtatggt gaaacggtat atgtgctgca accattatct
     1741 gatgaagata aagaaatggt gaacaaaatg gcggtacaaa acccaagttt agatgtaaac
     1801 aaaatgtacc gtgcaaaaca gatggaagtg aaaacggctg accgcaaagg aaactattca
     1861 caattatcca aaggcgtgaa agcaggtgat ctgattgtaa caggcggttt acaacgttta
     1921 agtaataatg cgttggttaa agtttctgat acagaagccg taggcattac cacaccggcg
     1981 aaaaacagta aactgtagtg gagtgagtta agtgaaattt actgacatct ttattaaacg
     2041 tcctgttttg gcagtttgta tcagcctatt gattacgatc ctaggcttgc aagcaatcga
     2101 aaaattgcag gtgcgtgaat atccggagat gacggtctcg attgtaaccg tgagtgttaa
     2161 ctattcaggt gcagatgcac gtttaatgca gacactggtt acctcacagt tagaagaggc
     2221 tgttgctcaa gcggataata ttgactatat gacttcatca agctctccaa gtaccactac
     2281 ggtaacggca aaaatgaagt taaataccga tccgaatgcc gcactttccg atatttcggc
     2341 aaaagtgaat gcggtacgct caaatttacc gagcggtatt gatgatccgt caattagagt
     2401 ctcaaccggt tcaaatgatg cgttaatgta tatccgattt gtctctgatg aacttaatac
     2461 atcacaagtt accgattata ttaaccgtgt agtaaaacca cagttcttta cggtaaatgg
     2521 tgtttctagc gttgatgtgt atggctctgt ttttggctta cgcatctggc ttgatccgga
     2581 taaaatggcg agcaataacc tatcaggggc ggctgtatta tcggcattaa gtgccaataa
     2641 cttgcaaacc gctgcgggta attctaacgg ttactatacg gtttatagaa acaaagtact
     2701 ttctaccacg ccttctgtga cagagttaga agaggttacg gtttcaacca ccaaagatgg
     2761 aaaaaccatc aaattaaaag atattgcgac tgttgagctg gataaatacc aagatgcagc
     2821 aagagcaacg gttggcggta aagatgcagt tgtgcttgct gtttcggtag ccgcaacggc
     2881 aaactcttta accgtagcga aagatattta tccgatgttt gagcaggtat taaaaaatct
     2941 accaagcacc attcaaggag atattgttta cgataaaacc attgcgattg atagttctat
     3001 caaagaagta attaaaacta ttggtgaggc aaccgtcatt gtattggtag taattatcct
     3061 gttcttaggt tcattacgag caatgattgt accggtgatt accattccga tttccttaat
     3121 cggggtatta ttcttcctgc aaatgtttgg tttctcgatc aacttgctta ctttgctggc
     3181 gttggtatta gcgatcggct tggtagtgga cgatgcgatt gtcgtacttg aaaacgtaga
     3241 acgtcacgtt aaagaaggta aaacgccatt tgatgcagcg attatcggta cacgtgaaat
     3301 tgctttaccg gttatttcaa tgactattac tctgggtgca gtatattcac caatggcatt
     3361 aatgaccggg gtaacaggga cactatttaa agagttcgct ttaacgcttg ccggtgcggt
     3421 atttatttcg gggattgcgg cattaaccct ttcgccgatg atgtctagcc gaatattaaa
     3481 agaacataaa gaaggggaag agtcagcatt tgcccgcgtg gtgcatagat cactagataa
     3541 aatgaccagc tgctatacca atatgctaag cggtattatg gctgttcgtg gtttcgtctt
     3601 attctttgcg gtgctgatct tcgccagttt accgatgtta tttggctcac tttccagtga
     3661 agttgcaccg acagaagacc gtggctttgt ggttggtatt tctaatggac cttcaaacac
     3721 caatttagat tataccgaag cagcgttagc ccaatttaat caggaagtaa ctaaattacc
     3781 tgaagtatct tccttaatga cagtttcagg ctttaatggt gcaaatagtg cattatcgat
     3841 tattgcatta aaagattgga atgatcgtag ccgtgaacgt gctgcgattt ctaatgatgt
     3901 ggctgcaatc ggtaaaaaag tggtgggtat ggacgtgaat gcaattgcat tccctgaaat
     3961 ttcaaccggt gaaaatggtc taccattctc attagtgatt actaccgctg atagctatga
     4021 aaaattggca atcgttgcct ctgaattctt gaaaaaagcc caaacttccg gtcagttctt
     4081 ctttgcgaat ttagatttga aatttgatac ggtcacgatg aatatgaaat tcgaccgtga
     4141 aaaaatgggt gcttatggcg tgacaatgca gcaggtgagt ggcacattag gggcattctt
     4201 atccggtgcg attattactc gtgtcgatat tgactctcgt gcttacccga ttgtgtcgca
     4261 agcggtgcgt aatgatcgtt taaatcctga agatttaatg aattactatg tcacgactgc
     4321 aacagggcaa tctatcccgt taggttcatt tgtgacgatg gaattaaaaa catcaccatc
     4381 ttctttacct cgtatgagcc aattaaactc ggccaccatt ggtggggtag tatctggctc
     4441 aatcggcgat gcggtaaatt gggcgaaagc agaattagat cgcactttac catcaggtta
     4501 tcaatatgac ttccgtggtg aatctcgcca gttcgttcaa gaaggtaatg cgatggcaat
     4561 gactttcgct ctagcagtta tcattatcta tcttgtactt gcaattcaat ttgaatcttg
     4621 gcgtgaccca ttagtaattt tggtttctgt gccgttagct gtgagtggtg cattgttggt
     4681 aatgaacatt ccaaccgcaa tgaaaggctt gtttatgggg attgcagcag gcactggctc
     4741 gaaagatatg atggcattcg ccaacggtat ttggacggca ggttatacct taaatatcta
     4801 ttcacaagta ggtctaatta cccttgtcgg cttaattact aaacacggta tcttgatgtg
     4861 tgaagtggcg aaagaagagc agttactgca cggcaaatca cgctatgaag ctattttcca
     4921 cgcagccacg attcgtttac gcccaattat gatgacaacg gcagcaatga ttgcaggctt
     4981 aattccgctt ctgtttgcgg tgggtgccgg tgcaatcgcc cgcttcagta tgggtatggt
     5041 aatcgtagca ggcttggcaa tcgggacatt gtttactctg tttatcttgc cggttatcta
     5101 cactttctta gggcaagaac acaagccatt acgtgaattt gacgaggaaa aatatttccc
     5161 aacgacaaaa gaagcatagt tttaaatagc aaaagagcgt agcgatacgc tcttttttgt
     5221 tggcttacaa gcggtcgttt tttatttatt gtttgctaaa aaatcacaaa atttaaccgc
     5281 ttgaaagtat attttcagat agcgtaaacg tttccctatt tacagaaacc tagttcctct
     5341 gtataatccg ctcgcaattt tccagtacag attttcaatt taatcatttt ttaaggaata
     5401 attgcaatgc tacgaattaa acaagaagcc ctcacttttg atgatgttct tctcgtcccg
     5461 gcacattcta ctgtgcttcc taatactgct gatctttcta ctcaattaac taaaaccatt
     5521 cgtttaaaca ttccgatgct ttctgctgca atggataccg ttacagaaac taagcttgcg
     5581 atctcccttg ctcaagaagg cggcattggt tttatccata aaaatatgtc gattgaacgc
     5641 caggcagacc gtgtgcgtaa agtgaaaaaa tttgaaagtg gtattgtttc tgagccagtg
     5701 acgatttctc ctgatatgac attagcggaa ttggctgaat tggtgaaaaa gaacggtttt
     5761 gcaggctatc cggtgattga tgaaaaccaa aatttagtgg gaattattac cggacgtgat
     5821 acccgatttg tcacggattt aagcaaaaca gtgcgtgaat ttatgacacc aaaagaccgt
     5881 ttagtgacgg taaaagaaaa cgcaagccgt gaagaaattt tccacttaat gcacgaacac
     5941 cgagtggaga aagtgctggt agtgaataat gaatttcagt taaaaggaat gattacccta
     6001 aaagactacc aaaaagcgga aagcaaaccg aatgcctgta aagatgagtt tgggcgtttg
     6061 cgtgtggggg cggcagtggg agccggtccg ggcaatgaag aacgaattga tgctttagta
     6121 aaagcgggtg tcgatgtgct attaatcgac tcttcgcacg ggcattctga aggtgtatta
     6181 caacgtgtgc gtgaaacccg tgcaaaatac cctgatttac cgattgttgc cggtaatatt
     6241 gccactgcag aaggagcgat tgcgttagct gatgcaggag ccagtgctgt gaaagtagga
     6301 atcggcccgg gttcaatttg taccaccaga attgtaacag gcgttggcgt gccacaaatc
     6361 acggcaatcg cagaagcggc agctgcgctt aaagaacgag gcattcctgt gattgctgat
     6421 ggtggaattc gttattcagg cgatatttca aaagctattg ccgccggtgc aagttgcgta
     6481 atggtcggtt cgatgtttgc cggcacagaa gaagccccgg gtgaaattga gctttatcaa
     6541 ggcagagcat tcaaatccta ccgtggaatg ggatcattag gtgcaatgag taaaggctcg
     6601 tcagatcgct atttccaatc tgataatgcc gccgacaagc tcgtaccgga agggattgaa
     6661 gggcgtatcg cttacaaagg ctacttgaaa gaaattatcc accaacaaat gggcggctta
     6721 cgctcctgta tgggattaac cggctgtgcc actattgaag aactccgcac caaagcagaa
     6781 tttgtccgca ttagtggtgc tggtattaaa gaaagccacg tccacgatgt gacaattacc
     6841 aaagaagcac cgaactaccg aatgggttaa tagcctttct cactctctcc ccttgtggga
     6901 gagagaccgt tttaaattac gttcagtaat ttaaaacaga gagagggaat aagtggttag
     6961 attttcttaa aattttacaa aagaggctat atgctccaag ctatcatttt tgatatggac
     7021 ggcgtgattg tggataccga atatctggaa ttttccttac aaaaacagtt tattgaagac
     7081 atcaaagaac acagccgccc gattacttta gaacaacaat cggaagtggt aggcaaatgt
     7141 ttaaaagaaa ttccggtgat tatcaaaaaa ctaagcgaat ccagtttgcc gattgaggaa
     7201 attcgtgcac gttactacgc ctttttccaa gatctgttta gcaaagtgga ttttaaaacc
     7261 attttcagag ccgatattca gcaaattatt caatttgcca agcagaatca aattaagctt
     7321 gcggttgcct cttcttccgc cctttcgcat attgaaaata ttctcacggt ttgcggcatt
     7381 aaagacgaat ttgatttaat cgtcagcggt gaacagtttg aacacagcaa gccagaccca
     7441 accatttacc gctacacctg cgaaaaatta ggcgttgagc cacaaaatgc agtggcgatt
     7501 gaagactcct actacggaat gctcgccgcc aaaaccgcag gcttaacggt gattggttac
     7561 gaagaaaaac gaatactgat tgaccaaagt ttagcggatt atatgggcaa agatatgaaa
     7621 gagattttga agattcttca aaaatgtaat actccaagtt aataaacggt cgatttttat
     7681 agaaattttg tcaatgtttc tacttcaagt acttggaaca gtctatcggc ttgagtaacc
     7741 tagaaatgag agtggatatt ttaatattaa taggataaat agaatgaaaa aattaagttt
     7801 aatttcaatc gtcgctttat
//
LOCUS       DANLRW010000109         7720 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.110, whole genome shotgun sequence.
ACCESSION   DANLRW010000109 DANLRW010000000
VERSION     DANLRW010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7720)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7720)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7720
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.110"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            29..1456
                     /gene="hldE"
                     /locus_tag="PXA71_002104"
     CDS             29..1456
                     /gene="hldE"
                     /locus_tag="PXA71_002104"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HDL5106180.1"
                     /translation="MMMQYSPKFNNAKVLVLGDVMLDRYWFGATNRISPEAPVPVVKV
                     QDIEERAGGAANVAMNIASLGVPVTLHGLIGDDDAGRALDKLLNSHQIQNHCVVINSH
                     PTITKLRILSRHQQLLRLDFEEGFHNVDSTALLAKLSQEITAYGALILSDYGKGTLES
                     VQQMIQIARNAKVPVLIDPKGTDFERYRGATLLTPNMSEFEAVVGHCKDEDEIVSKGL
                     KLIADYDLSALLVTRSEKGMTLLRPNHEPYHLPTQAKEVYDVTGAGDTVISVLATAIA
                     DGRAYEEACYLANAAAGVVVGKLGTSTVSPVELENAIHQRTATGFGVVSEAELKAIVE
                     EAKKRGEKIVMTNGCFDILHPGHVSYLENARKLGDRLIVAVNTDASVKRLKGEARPIN
                     DLAARMAVLAGLASVDWVVPFDEDTPQRLISEILPDLLVKGGDYKPEEIAGSQEVWAN
                     GGDVRVLNFENGCSTTNVIKKIQAL"
     gene            1470..2024
                     /gene="pyrR"
                     /locus_tag="PXA71_002105"
     CDS             1470..2024
                     /gene="pyrR"
                     /locus_tag="PXA71_002105"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HDL5106181.1"
                     /translation="MAREKIIIDTEQFQRTISRISHQIIEKHGDLQDVVIVGIKRRGA
                     EIAELIQKRIEDLAQTRLPYMALDITFYRDDLDLIYQDPVFMGADNQLNLNGKKVILV
                     DDVLFTGRTIRAALDALLDFGRAARIELVIFVDRGHRELPIRADYVGKNIPTAKNEQI
                     QVQTLSYDGINQVVLVPAANKESA"
     gene            2097..3047
                     /locus_tag="PXA71_002106"
     CDS             2097..3047
                     /locus_tag="PXA71_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDL5106182.1"
                     /translation="MKMKLVKSLFAVAVATMSLTQTAHAFEERVVALVNDTPIMQSQV
                     QRVLGKKKATETAQRAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENVAIQNGITY
                     GQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISISKSIQVAPQQVQALAKELMAKDK
                     AAGKLKTVSGKEHRISHILLKTNPILNDAQAKAKLSSLTTDINSGKISFEEAAKTHSV
                     DYASGADGGDLGFNFLEIYDPAFANVASKIKPNQISAPFKSQFGWHILKVTDTRNGDR
                     TEDAYHQRAYQQLVNKQAEEASKDWVKALRKTANIQYVGQ"
     gene            3109..3975
                     /gene="rsmA"
                     /locus_tag="PXA71_002107"
     CDS             3109..3975
                     /gene="rsmA"
                     /locus_tag="PXA71_002107"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDL5106183.1"
                     /translation="MSSTNSKKHLGHTARKRFGQNFLHDMNIIHSIVSAINPKNGQFL
                     LEIGPGLGALTEPVAELVDKLTVVEIDRDLAERLRHHPFLNQKLTIIEQDALRFNFRD
                     YFNQLNLDEDSVRVFGNLPYNISTPLIFHLLTFHDLIQDMHFMLQKEVVKRLCAAPNS
                     KAYGRLTIMAQYYCQVIPVLEVPPTAFKPAPKVDSAVVRLVPYNQLPYPAKDVYWLNR
                     VTTQAFNQRRKTLRNALSTLFSAEQLDALGVDLTARAENLTIADYVRLANWLHDNPPA
                     IDTTEELVDEDC"
     gene            complement(4086..4715)
                     /gene="upp"
                     /locus_tag="PXA71_002108"
     CDS             complement(4086..4715)
                     /gene="upp"
                     /locus_tag="PXA71_002108"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDL5106184.1"
                     /translation="MKIVEVKHPLVKHKLGLMREAEISTKDFRELANEIGSLLTYEAT
                     KDLEMESVEINGWSGEKIAVERIKGKKVTVVPILRAGLGMMDGVLEHIPSARISVVGI
                     YRDEETLKPVPYFSKLANDVDERLAIITDPMLATGGSMVATIDLLKKAGCKQIKVLVL
                     VAAPEGIKVLEAAHPDVELYTASIDSHLNENGYIIPGLGDAGDKIFGTK"
     gene            complement(4740..6425)
                     /gene="fadD"
                     /locus_tag="PXA71_002109"
     CDS             complement(4740..6425)
                     /gene="fadD"
                     /locus_tag="PXA71_002109"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HDL5106185.1"
                     /translation="MEKIWLNNYPPYSPKTIETDQYESLVEMFEAAIQRHPDIPAYIN
                     MGQVLTFRKLEERSRSFAAYLQNELRLKKGDRIALMMPNLLQYPIALFGALRAGLVVV
                     NVNPLYTPRELEHQLNDSGAKAIVIVSNFAATLEKIVFNTEIKHVILTRMGDQLSFGK
                     RTLVNFVVKYIKKLVPKYKLPHAVSFREALSIGKQRQYVKPNIVSQDLAFLQYTGGTT
                     GVAKGAMLTHQNLIANMMQAKWIVEPLLGNSANMIGLVPLPLYHVLALSMNCLLFIEL
                     GLTGLLITNPRDIPGFIKELKKYKVSVITGVNTLFNALLNHESFKEVDFSHLKLSVGG
                     GAAIQSSVAKRWHDLTGVHIIEGYGMTECSPLISATRGDSVEYSGSIGVPVPNTDIRI
                     VDDEGKEVPLGERGELVVKGPQVMQGYWNRPDETAQVLQDGWMATGDIVVMGDDLNLR
                     IVDRKKDMIIVSGFNVYPTEIEEVISQNPKVNEVVAIGVPSEASGESIKIFVTKKDES
                     LTRDELRTYCRQFLTGYKIPRDIEFRDELPKSNVGKILRRVLRDEELAKVNKA"
     gene            complement(6403..6867)
                     /locus_tag="PXA71_002110"
     CDS             complement(6403..6867)
                     /locus_tag="PXA71_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR reducing system RseC family protein"
                     /protein_id="HDL5106186.1"
                     /translation="MMIEQATVVEYQNGVAIVQCYAKSSCGGCVAQSACGSKALSALA
                     GEKIDPRFRIEVDEPLKVGDKVELGLAENILLKSVFLIYGIPLLVLVMTAVGFSQFFA
                     NELIVLFIMLLSTGITFWAVRKLIHKHSKQANFSPIFLGKVLGDYNGKNMAK"
     gene            complement(6864..>7720)
                     /locus_tag="PXA71_002111"
     CDS             complement(6864..>7720)
                     /locus_tag="PXA71_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MucB/RseB C-terminal domain-containing protein"
                     /protein_id="HDL5106187.1"
                     /translation="KSTYELVYILQQGSDTESFRLRHAFTHNKEYAQLLNLDHSREEI
                     ILKNNKVSYLGYNFRPFSLNSSQILDNLPNVLYTDYANLKGYAFLDAGKDRISDRITK
                     VIRMKPNDTLRYAYILWIDEETHLLLKSQVLNMDNLVLEEFRVLQLYQSPELDRIANV
                     IESLMLPTLTTVKKEEFPKSDGWQVKWLPTGFRLIQQQTVTGATYQVESEYVDSRVYS
                     DGLSTLTIYIMPSQGVSFNEYAWQQGKLTILNQTINDRDIVIIGDVPLQSAKQIMNNI
                     GFKEGAQP"
BASE COUNT         2277 a         1675 c         1523 g         2245 t
ORIGIN      
        1 cgccatcatt taacagagaa tattaactat gatgatgcaa tactctccaa aatttaataa
       61 tgctaaagtg ctggtgcttg gcgatgtaat gttagaccgt tactggttcg gggcaaccaa
      121 tcgaatttcg cctgaagccc ctgtgccggt ggtgaaagta caagatattg aagagcgtgc
      181 cggcggtgcg gcaaacgtgg cgatgaacat cgccagcctt ggcgtaccgg taacattaca
      241 cggcttaatt ggcgatgatg atgccgggcg tgctttagat aaattactta attcccacca
      301 gatccaaaat cattgtgtgg tgattaattc gcacccaacc atcacaaaat tgcggattct
      361 ttcccgccat cagcaattat tgcggttgga ttttgaagag ggttttcaca atgtagattc
      421 taccgcccta cttgcaaaac tttcgcaaga aattaccgct tacggagcat taattctctc
      481 ggattacggc aaaggcacat tggaatcggt gcaacaaatg atccaaattg cccgcaatgc
      541 taaggtgccg gtgctgatcg acccgaaagg cacagacttt gaacgctatc gtggggcaac
      601 attgcttaca ccaaatatgt cggaatttga agcggtggtt gggcattgta aagatgagga
      661 tgagattgtc agcaaagggt taaaactgat tgccgactat gatttatctg cactattagt
      721 tacccgttcg gaaaaaggaa tgaccttact tcgcccgaac cacgagcctt atcatctgcc
      781 gacccaagcc aaagaggttt atgatgtaac cggtgcaggc gataccgtaa tcagtgtatt
      841 agccactgcg attgccgatg gcagagccta tgaagaagcc tgctatttag ccaatgctgc
      901 cgccggtgta gtcgtaggta aattagggac ttcaaccgtc agcccggttg agctggaaaa
      961 tgcgattcac caacgcactg ccaccggttt tggcgtggtt tctgaagccg aattaaaagc
     1021 gattgtggaa gaagcgaaaa aacgtggcga aaaaatcgtg atgacgaacg gttgctttga
     1081 tattcttcac cccggtcacg tttcctattt ggaaaacgcc cgtaaattag gcgaccgatt
     1141 aattgtagcc gtcaataccg atgcttcggt aaaacgccta aaaggcgaag ctcgcccgat
     1201 taatgattta gctgcccgta tggcagtttt agctggttta gcctctgtag attgggttgt
     1261 gccttttgat gaagatacac cacaacgttt aatcagtgaa atcctacctg atttattggt
     1321 aaaaggtggt gattacaagc cggaagagat tgccggcagc caagaagtat gggcaaacgg
     1381 cggcgatgtg cgagtattga actttgaaaa cggctgttct accactaatg tgatcaagaa
     1441 aattcaagca ctataatggt aataagcgaa tggcgagaga aaaaatcatt attgataccg
     1501 agcaatttca gcgcacaata tctcgtattt cacatcaaat tattgaaaaa cacggtgatt
     1561 tgcaagatgt agtgattgtc ggcatcaaac gtcgaggagc tgaaattgcc gagttaatcc
     1621 aaaaacgcat tgaagattta gctcaaacac gcttgcctta tatggcgtta gatattacgt
     1681 tctaccgtga tgacctagac ttaatttatc aagatcccgt atttatggga gccgataatc
     1741 agctaaatct gaacggtaaa aaagtgattt tggttgatga tgttctgttt accggcagaa
     1801 ccattcgggc ggcacttgat gcactcttag attttggcag agctgccaga attgaactgg
     1861 tgatttttgt cgatagaggt catcgggaat tgcctatccg agccgattat gtcggaaaaa
     1921 atattccaac ggctaaaaac gagcaaattc aggtgcaaac gctctcgtat gatgggatta
     1981 accaagtggt cttagttcct gctgccaata aagaaagtgc ttaaattaag tgaacctttt
     2041 cgctaaactt atctctaagg aaaagttact gcttaattac ctccattagg attgttataa
     2101 aaatgaaatt agtcaaatca ttatttgctg ttgccgttgc aacaatgagt cttacccaaa
     2161 ccgcccacgc atttgaagaa agagtggtgg cgttagtgaa tgatacccct attatgcaaa
     2221 gccaggttca acgtgtgctt ggcaagaaaa aggcgacaga aactgctcaa cgtgcggcta
     2281 ttgatcaagt gattgatgat atgttggtgc aacaggcaat gaaagaagcc ggcgttaaag
     2341 tcagcccagc tgcggtaaac caagcggttg aaaatgtagc aattcaaaac ggcattactt
     2401 acggtcagtt attagatgcg ttagattatc aaggtattac acttgaacaa ttcaaacgta
     2461 atattgctca acaaatggca atggaacaag ttcgccatat cagcattagc aaatcgattc
     2521 aggttgcacc acagcaagtg caagctctgg cgaaagagtt aatggcgaaa gataaagcag
     2581 caggcaaatt gaaaaccgtt tctggcaaag agcatcgcat tagtcatatt ttgctcaaaa
     2641 ccaacccgat tttaaatgat gctcaagcca aagcaaaact tagcagctta actactgata
     2701 ttaactcagg caaaatcagc tttgaagaag cggcaaaaac ccattctgtt gattatgcct
     2761 caggggcaga cggtggagat ttaggtttta acttcttaga aatttacgat ccggcatttg
     2821 cgaatgttgc atcaaaaatc aaaccaaacc aaatttctgc tccgtttaaa tcgcaatttg
     2881 gttggcatat tttaaaagtc accgacactc gtaacggaga cagaaccgaa gatgcttacc
     2941 accaacgtgc ttatcagcaa ctggtgaaca agcaagccga agaagcctct aaagattggg
     3001 taaaagcgct tagaaaaacc gccaatattc aatatgtcgg tcaataatta aaatttttaa
     3061 gaacctcgca taatgcgggg ttcttttctt atttcaaaaa ggataacaat gagttctaca
     3121 aattccaaaa aacatttagg tcataccgct cgtaagcgtt tcgggcaaaa ctttttgcac
     3181 gatatgaaca ttattcacag catagtttca gccattaacc cgaaaaacgg acaattttta
     3241 ttagaaatcg gtccgggttt aggagcatta accgagccgg ttgccgaatt ggtagataaa
     3301 ctcacggtgg ttgaaattga ccgtgattta gcagagcgtt tacgccacca cccgttttta
     3361 aaccaaaaac tcaccattat tgagcaagat gccctacgct ttaatttccg tgactatttt
     3421 aaccaactca acttagacga agactcggtg cgtgtgtttg gtaacttacc ttacaacatt
     3481 tctacgccct tgatattcca cctgctgacc tttcacgact taattcaaga tatgcacttt
     3541 atgttgcaaa aagaggtggt gaaacgttta tgtgccgcgc caaacagtaa agcatacggg
     3601 cgtttaacca ttatggctca atactattgc caagtaattc cggtgctgga agtgccgcca
     3661 accgccttta aaccggcacc aaaagtcgat tctgcggtag tgcgtttagt gccttataac
     3721 caactgcctt atccggcaaa agatgtgtat tggctcaatc gggtcacgac tcaagccttt
     3781 aaccaacgcc gtaaaacctt acgcaatgct ctttcaaccc tgtttagtgc ggagcaactg
     3841 gacgccttag gcgttgattt aaccgcccga gcggaaaacc ttaccattgc cgattatgtg
     3901 cgtttggcta actggctaca cgacaacccg ccggcaattg atacaaccga agaattggtt
     3961 gatgaagatt gctaatcaat aaattacaag cggtcatttt tctaccaaga tttgcaaatc
     4021 tttagtgaaa aatggccgct tgtttaaatc agctttactt gttttgctgt tacttagttt
     4081 tgatgttact tggtgccgaa aattttatcc cctgcatcgc ctaagcctgg aatgatatag
     4141 ccgttttcgt ttaagtgact atcgattgag gcggtgtaga gttcaacatc tgggtgggcg
     4201 gcttctaata ctttaatccc ctctggagcg gcaactaaca ctagcacttt aatctgctta
     4261 cagcctgctt ttttcaggag gtcaatggtt gctaccattg agccaccggt tgcaagcatt
     4321 gggtcggtga taatggctaa acgctcatca acatcgttgg ctagtttgga gaaatacggc
     4381 acgggcttta aggtttcttc gtcacgataa atcccaacca cactaattct ggcacttgga
     4441 atatgctcta acacaccgtc catcatacct aagccagcac gcagaatcgg cacaacagtc
     4501 acttttttgc ctttaattcg ctcaaccgca attttctctc cgctccagcc attgatctcc
     4561 acactttcca tttccagatc tttggttgct tcgtaagtaa gcagactacc aatttcattc
     4621 gctagctcac ggaaatcttt ggtgctgatt tccgcttcac gcattaagcc caatttatgc
     4681 tttacaagtg ggtgttttac ttcaacaatt ttcattttaa gctccttaat tagtgtaatt
     4741 taagccttat tcacctttgc taattcttcg tctcttaaca ctcggcgaag aattttgccg
     4801 acattacttt ttggtaattc gtcacggaat tcgatgtctc ttggaatttt gtagccggtt
     4861 aagaattgac gacaataggt tctcaattca tctcgagtta aactttcatc ttttttggtt
     4921 acaaaaattt taatgctttc gccggaagcc tcactcggca caccaatcgc cactacttca
     4981 ttcacttttg ggttttggga aatcacttct tcaatttcgg ttgggtacac attaaaaccg
     5041 gagacaataa tcatatcttt tttacgatca acaatgcgta agttcagatc atcccccatt
     5101 accacaatgt caccggttgc catccaacca tcttgtagca cttgtgccgt ttcatcagga
     5161 cggttccaat agccttgcat tacttgcggc cctttcacca ccagctcgcc ccgttcgccg
     5221 agtggtactt ctttgccttc atcatccaca atacgaatgt cagtatttgg cactggcacg
     5281 ccaatagagc cggaatattc caccgaatcg ccacgggttg cactaatcag cggagaacat
     5341 tctgtcattc cataaccttc gataatatgt acgccggtta aatcgtgcca gcgttttgcc
     5401 acgctagatt ggatcgctgc accgccacct acacttaatt ttaggtgtga aaaatcaacc
     5461 tctttaaaac tttcgtgatt aagtaatgca ttaaacaatg tatttacccc agtaatcact
     5521 gaaactttgt acttttttaa ttctttaata aagcctggaa tatcgcgcgg attagtaatt
     5581 aataatccgg taagtcctaa ttcgataaag agcaagcaat tcatcgaaag tgctaagacg
     5641 tgatacagcg gtaaaggtac caatccaatc atattggcag aattacccaa caatggctca
     5701 acaatccatt ttgcctgcat catattagca attaagtttt gatgagtcag cattgcccct
     5761 ttcgctacac ctgtagtacc gccagtgtat tgtaaaaagg cgagatcttg gctgacaata
     5821 ttcggtttta catattgacg ctgtttgcca atgcttaagg cttcacggaa gctgaccgca
     5881 tgtggcaatt tatatttcgg cactaatttt ttgatgtatt tcaccacaaa attgactaag
     5941 gtgcgtttgc cgaatgaaag ttggtcgccc attcgggtca aaataacgtg cttaatctca
     6001 gtattaaaga caattttttc taaggtagcc gcgaagttcg agactatcac aatcgctttc
     6061 gcaccactgt catttaattg atgttctaat tcacgcggcg tataaagcgg gttgacattc
     6121 accaccacaa gcccggcacg taatgcgcca aataaagcga tcggatattg caataaattc
     6181 ggcatcatca atgcgattcg atcacctttt ttcaggcgta attcattttg caaataagcg
     6241 gcaaacgagc ggctacgttc ttccaattta cggaacgtta aaacctgccc catattaata
     6301 taagctggaa tatcagggtg gcgttgtatc gctgcttcaa acatttccac taaagattca
     6361 tattgatctg tttcaatcgt ttttggtgaa taaggcggat aattatttag ccatattttt
     6421 tccattatag tctcctaaaa ccttacctaa aaagataggt gaaaaatttg cttgtttgct
     6481 gtgtttatga atcaattttc ttacagccca gaatgttata cctgttgaaa gcaacattat
     6541 aaataaaaca ataagctcat ttgcaaaaaa ttgcgaaaat ccgaccgctg tcatcacaag
     6601 aaccagcaga ggaatgccat aaattaaaaa cacgcttttg agcaagatat tttcagctaa
     6661 ccctagttca accttatcgc ctacttttag gggttcatct acctcaatac gaaaacgagg
     6721 gtcaattttt tcacctgcta atgctgataa tgctttgctg ccacaagcag actgagctac
     6781 acagccacca cagctacttt tagcataaca ttgtacaata gccacaccat tctgatattc
     6841 caccaccgta gcctgttcga tcatcatggc tgagctcctt ccttaaaacc aatattgttc
     6901 ataatttgct tagccgattg caacggcaca tcaccaataa tcacaatatc tctatcatta
     6961 atcgtttgat ttaaaatcgt taatttacct tgttgccaag cgtactcatt aaaactcacg
     7021 ccttggctag gcataatata aatagttaat gtagataaac catcactata tactctgcta
     7081 tctacatact cactttccac ttgatatgtc gcacctgtga ctgtttgttg ctgaattaac
     7141 ctaaaccctg tcggcaacca cttcacctgc caaccatcag acttaggaaa ttcttctttt
     7201 ttcactgtcg ttaatgttgg taacattagt gattctatta catttgcaat cctatccaat
     7261 tctggagatt gataaagttg caaaactctg aattcttcta ataccaaatt atccatattc
     7321 aagacttggc ttttaagtaa taaatgtgtt tcttcatcaa tccatagtat ataggcatat
     7381 cttaaagtat catttggctt catacgaatt acctttgtaa ttcggtcaga aatacgatct
     7441 ttaccagcat ctaaaaaggc ataacctttt aaatttgcat aatctgtgta aagtacatta
     7501 gggaggttat ctaaaatctg tgaactattt aaactaaaag gacgaaaatt ataccccaaa
     7561 tagctgacct tgttattttt taaaataatt tcttctcggc tgtgatctaa attcagtaat
     7621 tgggcatatt ctttattatg ggtaaaagca tgacgtaaac ggaaagattc tgtatcactt
     7681 ccctgttgaa gaatataaac taattcataa gtggattttt
//
LOCUS       DANLRW010000110         7687 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.111, whole genome shotgun sequence.
ACCESSION   DANLRW010000110 DANLRW010000000
VERSION     DANLRW010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7687)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7687)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7687
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.111"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            46..1254
                     /locus_tag="PXA71_002112"
     CDS             46..1254
                     /locus_tag="PXA71_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDL5106188.1"
                     /translation="MSKNLILILNCGSSSLKFAILDPKTGDEKLSGLAEAFHLEDARI
                     KWKLNGEKGNADLGAGAAHSEALTFIAEKLLSDELKAGIGAIGHRIVHGGEKFTSSVV
                     ITDEVIKGIEDATQFAPLHNPAHLIGIKEAFRIFPELKDKNVAVFDTAFHQTMPEHAF
                     LYALPYTFYKENGIRRYGFHGTSHFYITSQVAELAGKSVEQTNAIICHLGNGGSVSVV
                     RNGKCIDTSMGLTPLEGLVMGTRSGDLDPAIISFLYNNLGMSMDEIDTTLVKKSGLLG
                     LTGVTSDCRYAEDNYNDVSKPEAKRALDVYSYRLAKYIGSYMAILGDDHLDAIAFTGG
                     IGENSGLVRELTLNHLKLFGIKLDQERNLAARFGKDGVITADESTFKAVVIPTNEELV
                     IAQDTAKLAL"
     gene            1307..3442
                     /gene="pta"
                     /locus_tag="PXA71_002113"
     CDS             1307..3442
                     /gene="pta"
                     /locus_tag="PXA71_002113"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005542370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDL5106189.1"
                     /translation="MSRTIILIPISTGVGLTSVSLGLVHALEQKGSKVGFLKPISQPI
                     SGEDTLDRSTTIIRAEQTTEVGEPFMLSEAETLIGQNQTDVLLEKVVERHQKLSKNNE
                     IVIVEGLIPTRKNSYANSINYEMAQALDAEIVLVAAPASDTPAQLKERVEAAASQFGG
                     RNNPNLLGVIINKFNAPVDDSGRTRPDLTEIFDSFQHSNNNVSEVEHLFAKSPIKLLG
                     CISWKAELIATRAIDVAKHLGASIINEGEIKARRIRGVTFCARNLPNMVDHFKAGSLL
                     VTSADRPEVLVAASLAVMNGIEIGAILLTGGYKIDSSIAKLCQQAFETGVPVFRIEGN
                     TWQTALSLQSFSLEVPVDDKERIAAIKEYMASKFNVGFIDEVSKAATRARRLSPAAFR
                     YQLTEYARQAKKRIVLPEGDEPRTVKAAALCAERGIAECVLLANPTDVQRVAEAQGVV
                     LGKGVTIIDPASIRENYVDRLVELRKAKGMTEVVAREQLLDTVVLGTMMLEANEVDGL
                     VSGAVHTTANTIRPPMQIIKTAPGSSIVSSIFFMLLPDQVLVYGDCAVNPDPTAEQLA
                     EIAIQSAESAKAFGIDPRVAMISYSTGTSGSGADVEKVKEATRIAQEKRPDLIIDGPL
                     QYDAAIMEDVARSKAPNSPVAGKATVFVFPDLNTGNTTYKAVQRSADLVSIGPMLQGM
                     RKPVNDLSRGALVDDIVYTIALTAIQATQ"
     gene            3556..4236
                     /gene="can"
                     /locus_tag="PXA71_002114"
     CDS             3556..4236
                     /gene="can"
                     /locus_tag="PXA71_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HDL5106190.1"
                     /translation="MEKIERLFANNHAWATKMKDEQSDYFKELAEHQKPTYLWIGCSD
                     SRVPAEKLTGLGPGELFVHRNVANMVIHTDLNCLSVVQYAVDVLEIEHIIICGHTNCG
                     GINAAIAQKELGLINNWLLHIRDIWFKHSHLLGKLPYEERSNVLTRLNVAEQVYNLGQ
                     SSIIKTAWEQGKSLSLHGWVYDVTDGFLIDQGVMATSRETLEITYRNAIAKITTEANE
                     KIVLNDEN"
     gene            4560..6281
                     /locus_tag="PXA71_002115"
     CDS             4560..6281
                     /locus_tag="PXA71_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
                     /protein_id="HDL5106191.1"
                     /translation="MKKLSGAEMIVQSLKDEGVEYVFGYPGGSVLDIYDAIHTLGLNH
                     VLVRHEQGAVHMADGYARSTGKVGCVLVTSGPGATNTITGILTAYTDSVPLVILSGQV
                     PSSLIGTDAFQESDMIGISRPVVKHSFLVKNTEEIPEIIKKAFYIASTGRPGPVVIDI
                     PKDVVNPLNKYPYEYPQEVSMRSYNPTVQGHKGQIKKALKALLVAKRPVLYVGGGVIS
                     AEGSPEITEFAQKLNLPVTCSLMGLGAYPASDKQYLGMLGMHGTFEANNAMHESDLIL
                     GIGVRFDDRTTNNLAKYCPNAKVIHVDIDPASISKTVQAYIPIVGSAKDVMEEFLSLL
                     GEENLAKNQVDLTAWWQQIDAWKARNCLAFEENSDVIKPQQVIRMIHKLTNGEAYVAS
                     DVGQHQMFAALHYGFDKPRRWINSGGAGTMGFGLPAAMGVKFAHPDATVVCVTGDGSI
                     QMNIQELSTAKQYDTPIVIVSLNNRFLGMVKQWQDIIYSGRHSQVYMNSLPNFAKLAE
                     AYGHVGIQIDHPSELEAKLTEAFSIKDKLVFVDVLVDETEHVYPMQVRGGAMNEMMLS
                     KTERTDA"
     gene            6274..6765
                     /gene="ilvN"
                     /locus_tag="PXA71_002116"
     CDS             6274..6765
                     /gene="ilvN"
                     /locus_tag="PXA71_002116"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005647229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDL5106192.1"
                     /translation="MRRTLAVLLENESGALSRVVALFSQRGFNIESLTVAPTDDPSLS
                     RMTIVAQGEEQVLEQIEKQLHKLIDVFKVSNLSAYEHVEREVLLVKVRATGSSRDELK
                     RMVDIYRGQIVDLTPKLYTIQLSGSTEKLNAFIEAVKEETTIVEIVRSGVISLSRGDK
                     NAL"
     gene            complement(6844..>7687)
                     /locus_tag="PXA71_002117"
     CDS             complement(6844..>7687)
                     /locus_tag="PXA71_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5106193.1"
                     /translation="AGVLFACINTLIPKLTSISPIDSNVIALVQYLAAFIFLVPSMNN
                     IGFFSSLKTEHFGQHCFRIFLSAIGIQCWTMALANQLPIWQGIALLMTSPLFVTIGSG
                     LFLKEKVDKKRWIATAMGFVGAMIILEPWSDHFEMIALLPIAAAFFWAGYSLMVKKLS
                     RYDSPTTMVAYLFILITPFNLLIALTNLSPSGFSLPSWSDFGFLILLGFFTALAQLAV
                     AKAYSVADASYIQPFDFIKLPLNVLAGWLVFNWVPPGKLWLGAAIIIAATIYITHAET
                     KQSN"
BASE COUNT         2447 a         1419 c         1584 g         2237 t
ORIGIN      
        1 tagtattttc ttcaaactca tttcataaaa taaggtaatt tgaccatgtc taaaaactta
       61 atcttaatcc ttaactgcgg tagttcatct cttaaatttg ctattttaga tcctaaaaca
      121 ggtgatgaaa aattatctgg acttgctgaa gcttttcatt tagaagatgc acgtatcaag
      181 tggaagttaa acggggagaa aggtaatgct gatttaggtg caggtgccgc acatagtgaa
      241 gcacttacct ttattgctga aaaattgtta tctgacgaat taaaagcagg tatcggcgcg
      301 attggtcatc gtattgttca tggcggtgaa aaattcacct catcagttgt aattaccgat
      361 gaagtgatta aaggtattga agatgcaacg caatttgcac cattacacaa ccctgcgcat
      421 ttaattggta ttaaagaagc attccgcatt ttccctgaat taaaagacaa aaacgtagct
      481 gtatttgaca ctgcattcca tcagacaatg ccggaacacg cattcttata tgcacttcca
      541 tatacattct ataaagaaaa tggtattcgt cgctacggtt tccatggcac aagccacttc
      601 tatatcacct cacaagttgc agaattagca ggtaagtctg ttgagcaaac caatgccatt
      661 atttgccact taggtaacgg tggttctgtt tctgttgtac gcaatggtaa atgtattgat
      721 acctcaatgg gtttaactcc attagaaggt ttagtaatgg gtactcgctc tggtgactta
      781 gaccctgcga ttatctcttt cttatacaat aacttaggta tgtcaatgga cgaaattgat
      841 actactctag taaaaaaatc tggtctttta ggtttaactg gcgtaactag tgactgtcgt
      901 tatgcggaag ataattacaa tgacgtatca aaaccggaag caaaacgtgc tttagatgta
      961 tatagctatc gtttagctaa atatattggt tcatatatgg caattttagg cgatgaccac
     1021 ttagatgcta tcgcatttac aggtggtatc ggtgaaaatt caggcttagt acgtgaatta
     1081 accttaaatc acttaaaatt atttggcatt aagttagatc aagagcgtaa ccttgctgcc
     1141 cgttttggta aagatggagt cattacagcg gacgagtcaa catttaaagc tgttgttatc
     1201 ccaactaatg aagaactcgt gattgcacaa gataccgcta aattagcatt ataatcatag
     1261 ggggcagata ttctgccctt tcactttctt ttaatttgga aatattatgt ctagaacgat
     1321 cattcttatc cctatttcaa ctggtgttgg tttaaccagt gttagcttag gtttagtaca
     1381 tgctttggag caaaaaggtt ctaaagtagg atttttaaaa ccgatttctc aacctatcag
     1441 cggtgaagat acgttagacc gctcaacaac gattatcaga gcagaacaaa caacagaggt
     1501 tggtgagccg tttatgttaa gcgaagctga aacattaatc ggtcaaaacc aaacggatgt
     1561 attgttagaa aaagtggtgg aacgccacca aaaattatca aaaaataatg aaattgtcat
     1621 tgttgaaggt ttaattccaa cgcgtaaaaa ctcatacgct aacagcatta actatgaaat
     1681 ggctcaagcc cttgatgctg aaattgtatt agttgcagca ccggcctcag atacaccagc
     1741 tcaattaaaa gagcgagttg aagctgccgc ttcacaattt ggtggacgta acaacccaaa
     1801 tttactgggc gttattatca ataaattcaa tgcaccagta gatgattcag gtagaacccg
     1861 tccagatttg actgaaattt ttgattcatt tcaacactca aataataatg tttcagaagt
     1921 cgagcatctt tttgctaaaa gtccaattaa gctgttaggc tgtattagct ggaaagcaga
     1981 acttattgct acacgagcaa ttgatgttgc aaaacattta ggcgcttcaa ttattaatga
     2041 aggcgaaata aaggctcgtc ggattcgcgg tgtgacattc tgtgcacgta acttaccaaa
     2101 tatggtcgat cattttaaag ccggtagttt attagttacc tctgcggatc gtcctgaagt
     2161 gttagttgct gcatcgttgg cggtaatgaa tggcatcgaa attggtgcta ttttactaac
     2221 cggtggttat aaaattgata gctcaattgc aaaactttgc caacaagcat ttgaaaccgg
     2281 tgtgcctgta ttccgtattg aaggtaacac ttggcaaacc gcattaagcc tacaaagctt
     2341 cagcttagaa gtgcctgtag atgataaaga gcgtattgct gcaattaaag aatatatggc
     2401 aagcaaattt aatgtaggtt tcattgatga ggtttctaaa gccgctactc gtgcaagacg
     2461 tttatcacct gcagcattcc gttaccaatt aaccgaatat gcccgtcaag cgaaaaaacg
     2521 cattgtttta cctgaaggag atgagcctcg tactgtgaaa gcggctgcat tatgtgctga
     2581 gcgtggcatt gcagaatgtg tgttattagc taacccaaca gacgtacaac gtgttgctga
     2641 agcacaaggc gtggtattag gtaaaggcgt aacgattatt gaccctgcga gcattcgtga
     2701 aaattatgtt gatcgcttag ttgaattgcg taaagcaaaa ggaatgactg aagttgttgc
     2761 tcgtgagcaa cttttagata cagttgtatt gggtacaatg atgcttgaag ctaatgaagt
     2821 ggacggttta gtctcaggcg cagttcacac aaccgctaac actattcgcc caccaatgca
     2881 gatcattaaa actgcaccgg gaagctctat tgtatcttct atcttcttta tgctactacc
     2941 tgatcaagta ttggtatatg gtgactgtgc ggtaaaccct gacccaactg cagaacagct
     3001 agcggaaatt gcgattcaat cagcagaatc tgccaaagcc tttggtattg accctcgtgt
     3061 tgcaatgatc tcctactcta ccggtacatc aggttcaggt gcggatgtag aaaaagtgaa
     3121 agaagcaact cgtattgccc aagaaaaacg tccagattta atcattgatg gcccattaca
     3181 atatgatgcg gcgattatgg aagatgttgc ccgctcaaaa gcaccaaatt cacctgtagc
     3241 aggtaaagca actgtatttg tcttcccgga tttaaatact ggtaatacca cctataaagc
     3301 ggtacaacgt tcggcagatt tagtctctat cggcccaatg ttacaaggta tgcgtaaacc
     3361 tgtaaatgac ttgtcccgtg gggctttagt tgacgacatc gtttatacta ttgcgttaac
     3421 tgcgattcaa gcaacgcaat aattccctcc caaatgaaac caaatgccct taaaactaag
     3481 ggcattttta ttttttacct acccgacttt tcaatttaat catataatca agattagtgt
     3541 taaaaaggag aatttatgga aaaaattgaa cgcttatttg ccaataacca cgcctgggca
     3601 actaagatga aagatgaaca atcggattat tttaaagaat tagcggaaca tcaaaagcca
     3661 acctatttat ggattggctg ttccgatagt cgtgtgcctg ctgaaaaact cacagggtta
     3721 ggccccggag aattatttgt tcatcgaaat gtagcaaata tggtgattca cactgatctt
     3781 aattgtctgt cggttgttca atatgcggta gatgtattag aaattgagca tattattatc
     3841 tgtggtcaca ctaattgtgg tggtatcaat gcggcaattg cacaaaaaga acttggttta
     3901 attaataact ggttgttaca tattcgtgat atctggttta aacacagcca tttactaggc
     3961 aaacttccct atgaagagcg atcaaatgtc ttgacccgat taaatgttgc agaacaagtt
     4021 tataatttag gtcagtcctc tattattaaa accgcttggg aacagggtaa atccctctcg
     4081 ctacacggtt gggtatacga tgttacagat ggtttcttga ttgaccaagg tgttatggct
     4141 actagccgag aaacattaga aattacctat cgtaatgcaa tagctaaaat aacaaccgaa
     4201 gcaaacgaaa aaatagtttt aaacgatgaa aattagccat tgtaagcggt taaatttatc
     4261 gattttttta caatcttttt ataaaaaacc attgtttgat ggttttttat tttcctgatt
     4321 cctgttatcg tcaaaaaagt tttaaatttc agcaaaagtg taaaatattg atttaaaaat
     4381 caaaaacata caaatatata gattttattt ttataaaatc ccaacttttt aagataaaaa
     4441 agaatataaa tctagcaaat ctagcatttg atcccataat aagaactaga catcaataaa
     4501 attttactgc aaaatccaac catcttagag aagaaaatgc tattttgttg gaggattcaa
     4561 tgaaaaaact ttctggtgca gaaatgattg tacagtcctt aaaggatgaa ggcgtagaat
     4621 acgttttcgg ctatccgggt ggctctgtac tcgatattta tgatgcaatt catacacttg
     4681 gattgaatca cgttttagtt cgacacgagc aaggtgctgt acatatggct gatggctatg
     4741 cccgttcaac aggtaaagtc ggctgtgtgc tagtgacttc aggtccggga gcaacgaata
     4801 caattactgg tattttaact gcttataccg actctgttcc gttagtaata ctgtcgggcc
     4861 aagttccatc aagtttaatt gggacagatg cattccaaga aagtgatatg atcggcattt
     4921 ctcgtccggt tgtaaaacac agtttcttag taaaaaatac agaagaaatt cctgaaatta
     4981 tcaaaaaagc cttttatatt gcatcaaccg gtcgaccagg cccggtagtt attgatattc
     5041 ctaaagatgt agtcaatcca ttaaataaat atccctatga atatccgcaa gaagtatcaa
     5101 tgcgttctta taacccaaca gttcaagggc ataaagggca aattaaaaaa gcattaaaag
     5161 cactattagt agcaaaacgt ccagtgcttt atgtaggcgg tggtgtaatt agtgcagagg
     5221 gttcgccaga aattacagag tttgcacaaa agctaaatct acctgtaacc tgttcattaa
     5281 tgggattagg tgcttatcct gcctctgata agcaatattt aggtatgtta ggcatgcacg
     5341 gcacttttga ggcaaataat gcaatgcacg aaagtgattt gattttaggt attggggtac
     5401 gttttgatga tcgtacaaca aataacttag caaaatattg cccgaatgca aaagtgatcc
     5461 acgtggatat tgatccagcc tcaatttcca aaacagtaca agcttatatt ccaattgtag
     5521 gcagtgctaa ggatgtaatg gaagaatttt tatctttatt aggtgaggaa aatcttgcaa
     5581 aaaatcaggt agatttaacc gcttggtggc aacaaattga tgcttggaaa gctcgtaatt
     5641 gcttagcctt tgaagaaaac agtgatgtga ttaagccaca acaagtgatt agaatgatcc
     5701 acaagttgac caatggggag gcttatgttg cctcagatgt tggacaacat caaatgtttg
     5761 ctgcattgca ttatgggttc gataaaccac gtcgttggat taattcaggc ggtgcaggca
     5821 caatgggctt tggcttacct gctgcgatgg gggtaaaatt tgcccaccct gatgccactg
     5881 ttgtttgtgt aaccggtgat ggtagtatcc aaatgaatat ccaggaactt tccaccgcaa
     5941 agcaatacga cacaccgatt gtgattgtca gcttaaataa ccgtttctta ggtatggtga
     6001 aacagtggca agatattatt tactctggcc gccattcaca ggtgtatatg aattctctac
     6061 ctaactttgc taaattagca gaggcttatg gccacgttgg gattcaaatc gaccaccctt
     6121 ctgaattgga ggcaaaatta actgaggcat tctcaattaa agataagctt gtatttgttg
     6181 atgtattggt cgatgaaacg gaacatgttt acccaatgca agtgcgtgga ggagcaatga
     6241 atgaaatgat gttaagtaaa acggagagaa cagatgcgta gaacattagc cgtattatta
     6301 gaaaatgaat caggtgcatt atctcgtgta gttgcccttt tctcgcagcg tggttttaac
     6361 attgaaagct tgaccgttgc ccctactgat gatccaagcc tttcccgtat gacaattgtc
     6421 gcgcaaggcg aagaacaggt gttagaacaa atcgaaaagc aactacacaa actcattgat
     6481 gtgtttaaag tgagtaactt aagtgcttat gaacacgttg agcgtgaagt gttattggta
     6541 aaagtgcgag ctacaggttc atctcgtgat gaactgaaac gtatggtaga tatttaccgt
     6601 gggcaaatcg tagatttaac accgaaactt tacaccattc aattatccgg ttctaccgag
     6661 aagctcaatg catttattga ggcagttaaa gaagaaacaa cgattgtaga gattgttcgc
     6721 tctggcgtga ttagtctatc tcgtggcgat aaaaacgctc tgtaagcggt caattttagc
     6781 ttaaaatttg caaatccctt tatctttgag ataaagggat ttttatgtag cgtgaatttg
     6841 ttgctaatta ctctgtttag tttcagcgtg agtaatataa atggtcgcag caataataat
     6901 cgcagctcct agccataatt tacccggtgg cacccagtta aatacaagcc aaccggctaa
     6961 tacgttcaaa ggtaatttaa taaaatcaaa cggctgaatg taggaagcat ctgctacact
     7021 gtaggctttg gctaccgcca gttgcgctaa cgccgtaaag aaaccaagta agattaaaaa
     7081 gccgaaatcg ctccaagaag gcagactaaa cccactaggg ctaaggttcg tgagtgcaat
     7141 caacaaatta aaaggcgtaa ttagaataaa caggtaagcg accatcgtag ttgggctatc
     7201 gtaacgagag agttttttca ccattagcga ataacctgcc cagaaaaaag ccgcggcaat
     7261 cggcagtaac gcaatcattt caaaatgatc gctccaaggc tctagaataa tcatcgcccc
     7321 aacaaacccc attgcggttg caatccaacg ctttttatcc actttctctt tcaaaaacag
     7381 accggagccg atggtcacaa acaatggaga agtcatcaat aacgcaattc cctgccaaat
     7441 aggtaattgg ttagcgagtg ccattgtcca acattgaata ccaatcgcag atagaaaaat
     7501 acggaaacag tgttgcccaa aatgctcggt ttttaatgaa gagaagaaac cgatattatt
     7561 catgctggga acgaggaaaa taaaggcagc taaatattgc accaatgcaa tcacgttcga
     7621 gtcaatcggt gaaatggacg ttaatttggg aattaaggta ttgatacagg caaataacac
     7681 accggca
//
LOCUS       DANLRW010000111         7619 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.112, whole genome shotgun sequence.
ACCESSION   DANLRW010000111 DANLRW010000000
VERSION     DANLRW010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7619
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.112"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            207..2663
                     /gene="thrA"
                     /locus_tag="PXA71_002118"
     CDS             207..2663
                     /gene="thrA"
                     /locus_tag="PXA71_002118"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005603497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HDL5106194.1"
                     /translation="MRVLKFGGTSLANPERFMQAAEIIEKAHLADQAAGVLSAPAKIT
                     NHLVAIVDKAIAGESFQSNLSEATEIFHNIINGLYATNNHFAKEALLALVEAELNQIQ
                     QVAAEAAQTKSLSDKIAATIHCRGEKLSIAMMQAWFEAKGYEVTRIDPVEKLLAHGSY
                     LESSVDIAESTKRVDAGSIPKKNIVLMAGFTAGNEQGELVLLGRNGSDYSAACLAACL
                     KADVCEIWTDVDGVYTCDPRLVPDAVCLETMSYQEAMELSYFGAKVIHPRTIGPLVPL
                     NIPCLIKNTGNPDGKGTLIDGNVANDNLKVKGITNLDNVAMFNVSGSGMQGMVGMAAR
                     VFSTMSKAGISVILITQSSSEYSISFCVPAKSAEKALAALNTEFAQELSENLLDPIDI
                     IKDLSIVSVVGDGMRTAKGIAARFFSALAQANISIVAIAQGSSERSISAVVPLNKAIE
                     AVKATHKSLFNSKRVVDMFLVGVGGVGSELIEQVKQQKEFLAKKDIEIRVCALANSDK
                     MLLNENGLNLDNWKEDLEKAIQPSDFDVLLSFIKFHHVVNPVFVDCTSAQSVANLYAR
                     ALKEGFHVVTPNKKANTSGYDYYLEMRENARQSQHKFLYETNVGAGLPVIENLQNLLA
                     AGDEVEKFEGILSGSLSFIFGKLEEGLTLSQATLIAKEKGFTEPDPRDDLSGADVARK
                     LLILVRETGLPLEFEDIEIEGVLPKGFSEGMSRDEFLQALPSLDEEFSKRVEAAKAEG
                     KVLRYVGSITGDKCRVAIEAVDENHPLYKVKDGENALAFLTRYYNPIPLLLRGYGAGN
                     SVTAAGIFADILRTLQGGVN"
     gene            2663..3610
                     /gene="thrB"
                     /locus_tag="PXA71_002119"
     CDS             2663..3610
                     /gene="thrB"
                     /locus_tag="PXA71_002119"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDL5106195.1"
                     /translation="MALRIYAPASSANISVGFDSLGAAISPIDGSLLGDVVQIEESEQ
                     QFELESAGYFVRKLPKEPQKNIVYQAYVLFSERLKLRNGSVKNLRLTLEKNMPIGSGL
                     GSSACSIVAALVALNKFHDEPFSKMELLEMMGELEGRISGSIHYDNVAPCYLGGLQLM
                     TQSLGNICQPLPFFDEWYWVLAYPGVEVSTAEARAILPKSYTRQDMIQQARYLGSFVH
                     ACHTHQDILAATMMKDLIAEPYREDLLPNFPAVRQGCKDLGALAVGISGSGPTMFAIA
                     PDLEHAQRLVSYLEKEYLQNNEGFIHICKVDNQGARELK"
     gene            complement(3725..5101)
                     /gene="cysS"
                     /locus_tag="PXA71_002120"
     CDS             complement(3725..5101)
                     /gene="cysS"
                     /locus_tag="PXA71_002120"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDL5106196.1"
                     /translation="MLKIYNTLKREKEEFKPINPNQVGMYVCGVTVYDLCHFGHGRTF
                     VSFDVIARYLRYSGYNLRYVRNITDVDDKIIKRALENNETCDELVDRMIAEMHKDFDA
                     LNILRPDVEPRATKHIPEIIAMVEKLIHNGHAYVAADGDVMFDVESFQKYGALSRQNL
                     EQLQAGARVEIKSIKKNPMDFVLWKMSKAGEPSWESPWGNGRPGWHIECSAMNSKELG
                     EHFDIHGGGSDLMFPHHENEIAQSCCAHGGDYVNYWLHTGMLTIDKEKMSKSLGNFFS
                     IRHMLGLYDAESLRYFFLTAHYRSLLDYSIDNLDLARSALERLYTALRGCDVSGEAIG
                     EHYVEAFKTAMDDDFNTPGALAVLFEIARELNKLKTEDMAKANGLAVRLKELAGVLGL
                     LEQDPDAFLKGDANDDETAEIEALIKQRNEAKAAKNWAVADEVRDKLKAINIVLEDTP
                     NGTIWRKA"
     gene            5257..5766
                     /locus_tag="PXA71_002121"
     CDS             5257..5766
                     /locus_tag="PXA71_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HDL5106197.1"
                     /translation="MITLHTNFGDIKIELNFEKAPITAKNFEDYAKEGFYNGTIFHRV
                     IDGFMIQGGGMTAGMAEKPTKDPIQNEANNGLSNKRGTIAMARTSDPHSASSQFFINV
                     ADNTFLDYRSKEMFGRSVVQDWGYAVFGEVVEGMDVVDKIKGVKTGNKGFHQDVPVED
                     VVIESVSVA"
     gene            complement(5858..6787)
                     /locus_tag="PXA71_002122"
     CDS             complement(5858..6787)
                     /locus_tag="PXA71_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDL5106198.1"
                     /translation="MEIALLLADKILQLTLMVLLGYLIVKTKLLKSEHSYPISVIGLY
                     IISPAMLITAFQVDYTTEILNGLYLAFLISVLLNGLLILLGWLLKRALKLDNIEQATA
                     IYSNSGNLIIPIVASLFGNEWVIYSTAFIVVQNVLFWSHLRLLICGKGNVPFRKMIFN
                     INIIAIVIGMMLFLLHIKLPATLANTLSTLGHMLGPLAMLVAGMLIAAIPFKEIITDK
                     RIYLVAFLRLIFIPLILLAVIKLGGFASWIENGKTVVMITFLATISPSAATATQMAVA
                     YGQDAKKASAIYGVTTLLCVFTMPLIIWLYQFL"
     gene            complement(6790..7584)
                     /gene="fdhD"
                     /locus_tag="PXA71_002123"
     CDS             complement(6790..7584)
                     /gene="fdhD"
                     /locus_tag="PXA71_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDL5106199.1"
                     /translation="MNAKKLSLSTNSIKQKDDEENLISEVPVALVYNGISHTVMMATP
                     ANLEDFALGFSLAEGILNAPSELYGLDVIEQENGVEIQLEISSRQFVALKDKRRSMAG
                     RTGCGICGVEQLEQVNQSCKIVKKNNRLQNVNPLILEDCLLQLENAQFLSKETGASHA
                     AAFFTPDGKLLAIREDVGRHVALDKLIGWYAKADFPIGFVFVTSRASFEMVQKCLAVG
                     IEMLCAISATTEMAVNMARENQFTLLAFARKGKATIYAGEERLALN"
BASE COUNT         2235 a         1629 c         1602 g         2153 t
ORIGIN      
        1 cacgcattct tgaaccatta ttcactctct tgaccgagat tccgccaatg aattgtttta
       61 atatgatgac aacgattatt accaccatta tgtcaccaac atagtgcggg ttttaattgg
      121 ctgaaataat gaaagaataa accgaaaacc cgctacaagc gggttttttt gtataaaaat
      181 ttacaaataa tttatcagga gtaactatgc gagttcttaa atttggaggc acttctcttg
      241 ccaaccctga acgctttatg caagcggcag agattatcga gaaagctcat ttggcagatc
      301 aagctgccgg cgtattatcc gccccagcca aaattaccaa tcatcttgtc gctattgtag
      361 ataaagcgat tgccggtgaa tcatttcaat ctaacctttc tgaagctacc gagattttcc
      421 acaacatcat taacggctta tatgctacaa ataatcactt tgctaaagaa gcactgttag
      481 ccttagtgga agcggaatta aaccaaattc agcaagtggc tgcagaagca gctcaaacta
      541 aatcgttgtc agataaaatt gctgccacta ttcactgccg tggtgaaaaa ctctctattg
      601 cgatgatgca agcgtggttc gaggcaaaag gctatgaagt cactcgtatc gaccctgttg
      661 aaaaattatt ggctcacggc agctatttgg aatcttcggt cgatattgcc gaatccacca
      721 agcgagttga tgcaggttca attccaaaga aaaatatcgt gctaatggct ggttttaccg
      781 caggtaatga gcaaggcgaa ctggtgttat tagggcgtaa cggttcagat tattctgccg
      841 cttgtttggc agcgtgttta aaagccgatg tttgtgaaat ctggacggac gtagatggcg
      901 tttacacctg cgaccctcgt ttggtgcctg atgcagtatg cttagaaaca atgagctatc
      961 aagaggcaat ggagctttcc tactttgggg cgaaagtgat ccaccctcgc accatcgggc
     1021 cattagtgcc gctcaatatt ccttgtttaa tcaaaaatac cggcaatccg gacggaaaag
     1081 gcacattaat tgatggcaat gtggcaaacg ataatctcaa agtaaaaggg attaccaacc
     1141 ttgataacgt ggcgatgttc aacgtttcag gttcaggaat gcagggaatg gtgggcatgg
     1201 ctgcccgtgt gttctcgacg atgtcaaaag ccggtatttc ggtgatttta attacccaat
     1261 catcatcaga atatagcatc agcttctgcg tgccggcaaa atcggcagaa aaagcgttag
     1321 cggctctaaa tactgaattt gcacaagagt tatctgaaaa cttacttgac ccgattgata
     1381 ttattaaaga tttatccatt gtttcggtag tgggtgatgg tatgcgtacc gccaaaggaa
     1441 ttgcggctcg cttcttctct gccctagccc aagccaacat cagtattgtg gcaattgcac
     1501 agggttcatc tgagcgttcc atttctgctg tcgtgccgtt aaacaaagcg attgaagcag
     1561 taaaagcaac tcacaaatcg ctatttaaca gtaaacgtgt ggtggatatg tttttagtgg
     1621 gtgtaggcgg tgtgggtagc gaactcatcg agcaagtcaa acaacaaaag gagtttttgg
     1681 caaagaagga tattgagatc cgtgtgtgtg ctttagctaa ttcagataaa atgttactca
     1741 acgaaaacgg cttaaattta gacaactgga aagaagattt agaaaaagca attcagccgt
     1801 cagactttga tgtattgctt tctttcatca aattccacca cgtggtaaac ccagtatttg
     1861 tagattgcac ttcggcacaa tcggtggcga acctgtacgc acgagcctta aaagagggct
     1921 tccacgtggt aacaccaaac aaaaaagcca atacatcagg ttacgattac tacttagaaa
     1981 tgcgtgaaaa cgcccgccaa agccagcaca aattcctcta cgaaactaat gtaggggcag
     2041 gtttaccggt aattgaaaac ttacaaaacc tattagctgc cggtgacgaa gtagagaaat
     2101 ttgaagggat tttatccggc tcgctctctt tcattttcgg caaattagaa gaaggtttaa
     2161 ccctttcgca agcaacttta atcgccaaag aaaaaggctt taccgagcca gatccacgag
     2221 atgatttatc cggtgcagat gttgctcgta aactcttaat tcttgttcgt gaaaccggct
     2281 taccgcttga atttgaagat attgaaattg aaggcgtatt gccaaaaggc ttctcggaag
     2341 gaatgagtcg tgatgagttt ttacaagctc taccgtcttt agacgaagaa ttcagcaagc
     2401 gtgtagaagc tgccaaggct gaaggcaaag tgttgcgtta tgtgggctcg atcacaggtg
     2461 ataaatgccg agttgccatt gaagccgtgg acgaaaacca cccactttac aaagttaaag
     2521 acggcgaaaa tgcccttgct tttctcacac gttactacaa ccctattcca ttattattgc
     2581 gtgggtatgg tgcgggcaat agcgtaaccg ctgccggtat ctttgcagat attctgcgta
     2641 ctttacaagg aggagtgaac taatggcgtt acgaatttat gccccagctt caagtgcaaa
     2701 tattagtgtg ggttttgact cattaggcgc tgcaatctcc ccgattgacg gctctttgct
     2761 cggcgatgta gttcaaattg aagagagtga acaacaattt gagctagaaa gtgcaggtta
     2821 ttttgtacgt aaattgccca aagaaccaca aaaaaacatt gtctatcaag cctatgtgct
     2881 atttagcgaa cgcttgaaat tacgtaacgg cagtgtaaaa aatttacgct taacacttga
     2941 aaaaaatatg ccgattggct cagggctagg ctcaagtgcc tgctcgattg ttgcagcatt
     3001 agtggcactc aataaattcc acgatgaacc gttctccaaa atggaattac tggaaatgat
     3061 gggcgaattg gaaggcagaa tttcaggctc aatccactac gacaacgttg ccccttgcta
     3121 tttaggtggc ctgcaattaa tgacacaatc gctcggcaat atttgccaac ctctgccatt
     3181 ctttgatgaa tggtattggg tgcttgccta cccgggcgtg gaagtatcaa ccgccgaagc
     3241 ccgtgctatt ttgccgaaaa gctatactcg tcaagatatg attcagcaag cccgctactt
     3301 aggatctttc gtccatgctt gccatacaca tcaagatatc ttggctgcta caatgatgaa
     3361 agacctaatt gctgagcctt accgtgaaga tttactgccg aactttccgg ctgttcgtca
     3421 aggctgtaaa gacttaggtg cgttagcggt tggtatttca ggttccggtc cgacaatgtt
     3481 tgcgatagcc cctgatctcg aacacgctca acgtttagtg agctatttag agaaagaata
     3541 tctgcaaaac aacgaaggct ttattcatat ctgtaaagtc gataatcaag gagcaagaga
     3601 gctgaaatag ccctctcgaa caaccatatc actaaataac ttaaaggact gactccaata
     3661 ccacttggag cagccctttt tgattaattt tttgaaaagt ctatcactta taaacaatcg
     3721 aaggctatgc cttacgccaa attgtgccgt ttggggtgtc ttcgaggaca atatttatcg
     3781 ctttgagctt atctcgcact tcatcggcaa ccgcccagtt tttagccgct ttggcttcgt
     3841 tgcgttgttt gattaaggct tcgatttctg ccgtttcatc gtcattcgca tcacctttta
     3901 aaaacgcatc ggggtcttgt tccagtaagc ctagcacgcc ggctaactct tttaaacgaa
     3961 cggctaaacc gttggctttt gccatatctt cggttttgag tttgttcaac tcacgggcaa
     4021 tttcaaataa caccgctaat gcccccgggg tgttgaaatc atcgtccatt gcggttttaa
     4081 aggcttctac atagtgttct ccgatggctt cgcccgacac atcacaacca cgcagagcgg
     4141 tatataaacg ctcaagagcc gaacgggcta aatcaaggtt gtcaatgctg taatctaata
     4201 acgaacggta atgagcggtt aagaagaaat aacgtaacga ttcggcatcg tataagccta
     4261 acatatggcg aatgctgaag aaattgccca aagatttcga cattttttct ttatcaatgg
     4321 taagcattcc agtgtgtaac caataattga cataatcgcc accgtgagca cagcaagatt
     4381 gtgcaatttc gttttcgtga tgcgggaaca ttaaatccga gccaccgccg tgaatatcaa
     4441 aatgttcgcc caactctttg ctattcattg ccgaacattc aatatgccag cccggtctgc
     4501 cattgcccca cgggctttcc cagcttggct caccggcttt cgacattttc cacaagacaa
     4561 aatccatcgg gtttttcttg atggatttaa tttcaaccct tgcaccggct tgtagttgct
     4621 ctaaattttg gcgggataat gcaccatatt tctggaacga ttccacatca aacatcacat
     4681 cgccatcggc tgcgacataa gcgtgtccgt tgtgaatcag tttttctacc atcgcaataa
     4741 tttcaggaat atgcttggtg gctcgtggct caacgtccgg gcgaagaatg tttaacgcat
     4801 caaaatcttt gtgcatttca gcaatcattc tatccactaa ttcatcgcaa gtttcgttat
     4861 tttctaacgc acgtttgatg attttgtcgt ccacatcggt aatgttacgc acatagcgta
     4921 aattgtagcc tgaataacgt aaataacggg caatcacatc gaaagagaca aaagtgcgac
     4981 cgtgcccaaa atgacaaaga tcgtaaaccg tgacgccaca gacgtacatt cccacctgat
     5041 ttgggttaat cggtttaaat tcttcttttt cacgttttaa ggtgttataa attttgagca
     5101 taaagtcctc ttgtgtaaca ttcagtaaca aatggggcta agtatagcga ataagcggtc
     5161 tgattttgag atttttttgc aatttggcgt aaacttttta ataatagcga gcgaaattta
     5221 ttttccattc catttttatt tataaaggaa caaagaatga ttacattaca taccaatttc
     5281 ggtgacatta aaatcgaatt aaactttgaa aaagccccga ttaccgctaa aaactttgaa
     5341 gattacgcta aagaagggtt ttataacggc acgattttcc accgtgtgat tgacggcttt
     5401 atgattcaag gtggcggaat gacggcaggt atggctgaaa aaccgacaaa agatccgatt
     5461 caaaacgaag cgaacaacgg tttaagcaac aagcgtggca caatcgcaat ggctcgcact
     5521 tctgatccgc attctgcttc gtcacagttt ttcattaatg tggcggataa tactttctta
     5581 gattatcgct caaaagagat gttcggcaga agtgtagtgc aagattgggg ctatgcagta
     5641 tttggcgaag tggttgaagg tatggacgtg gtcgataaaa tcaaaggcgt aaaaaccggc
     5701 aataaaggct tccaccaaga cgtgccggtt gaagatgtgg tgattgagtc tgtaagcgtt
     5761 gcctaattcc gcaaattagc ctacaagcgg ttgatttttc acaatttttt gcatttctca
     5821 gcgttgcaaa aaagtagcag aaatcgactg cttgttttta tagaaattga tacagccaaa
     5881 taatcagcgg cattgtaaac acacaaagta aagtggttac gccataaatc gcactggctt
     5941 ttttggcatc ttgcccgtaa gccaccgcca tttgggtcgc cgttgcagca gaagggctga
     6001 tggtggctaa gaatgtaatc attaccaccg tttttccatt ctctatccag ctcgcaaaac
     6061 cgccgagttt aatcaccgct aacaaaatca gcggaataaa aatcaagcgg agaaaagcca
     6121 ccaagtaaat gcgtttatcg gtaataatct ctttaaatgg aattgctgca attaacatcc
     6181 ctgccacaag cattgctaaa ggccctaaca tatgccctaa agttgagagc gtgtttgcaa
     6241 gcgtagcggg cagtttgata tgtagcaaaa acaacatcat accaatcaca atcgcaataa
     6301 tgttgatatt aaagatcatc tttctaaacg gcacattgcc tttgccacaa atcagcagcc
     6361 gtaagtgaga ccaaaacaac acattttgca ccacaataaa agccgttgaa taaatcaccc
     6421 attcattgcc gaacagggag gcaacaatcg gaataattaa gttgccggag ttggaataaa
     6481 tagcggtggc ttgttctatg ttgtctaatt tcaacgctct tttgagcagc caaccaagca
     6541 gaattaacaa gccgtttaat aagacggaga ttaaaaatgc cagatacaag ccgtttagta
     6601 tttcggtggt gtaatctact tgaaaagcag taatcagcat tgccgggctg ataatgtaaa
     6661 gtccgataac cgaaatcgga taactgtgct ccgatttgag taatttagtt ttaacgatga
     6721 ggtagccgag cagcaccatc agggttaatt gtagaatttt atcggctaat aaaagggcta
     6781 tttccattat caattaagag cgagtctctc ttctcctgca taaatggtcg ctttgccttt
     6841 gcgggcaaaa gcaagtaagg taaattgatt ttcacgagcc atattcactg ccatttcagt
     6901 ggtcgctgag atggcacaca acatttcaat gccaacggct aagcatttct gcaccatttc
     6961 aaagctggca cgactggtta caaacacaaa tccaatcgga aaatcagctt tagcatacca
     7021 accgattaat ttatccaacg ccacgtgtct gcccacatct tcacgaatgg caagcagttt
     7081 tccatccggg gtaaaaaatg cagcggcgtg gcttgcaccg gtttctttcg ataagaattg
     7141 agcattttct agctgtaata aacaatcctc taaaatcagt ggattgacgt tctgcaagcg
     7201 gttatttttc ttaacaattt tgcaactttg attaacctgc tctaattgct ctacaccgca
     7261 aataccgcaa cctgttctgc ctgccattga gcggcgttta tcttttaatg caacaaattg
     7321 gcggctcgat atttcaagct gaatttctac tccattttct tgttcaatta catctaaacc
     7381 atataattcc gatggggcat ttaaaatccc ttccgccaat gagaatccta aagcgaagtc
     7441 ctccaaatta gccggtgttg ccatcattac agtatgagaa ataccgttat ataccaaagc
     7501 aaccggcact tctgaaatta aattttcttc atcatctttt tgtttaatac tattagttga
     7561 taatgataat tttttggcat ttatttttgt gatcttattc acaatattta tctctcact
//
LOCUS       DANLRW010000112         7562 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.113, whole genome shotgun sequence.
ACCESSION   DANLRW010000112 DANLRW010000000
VERSION     DANLRW010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 7562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7562
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.113"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            77..2224
                     /locus_tag="PXA71_002124"
     CDS             77..2224
                     /locus_tag="PXA71_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5106200.1"
                     /translation="MKRLRYSYLALILGSALPLSAYADGYLSNDNIRQFDARFNFFLA
                     NPLPAPIAKADGRGEAIENLVVKYASDYLNDIYLKEDVIRFRRWQWQDLYTSLDLKTK
                     QKPDYLNTYRLQAEAYFINKQYQEALSQLDQILRRNPNDVHAMAMSVVASRVLENPNT
                     EAERLLALYQISPSIAQKVQQYLHFTDTMLAASYGSEPQTTMIPDTIAVFGQSPNPDG
                     TPSKGLLQRLEKTKEMAEKFPNAKIILSGGPVRYIYAEADVMKKWLIENGVDESRLLL
                     DDVARDTPGNAVGIIDFMKEYGGRKVLGIGTILHLPRAMSVLKSYADSIGYELEIDSA
                     GGGSPPNEKNKKGEALYTFVNVARAMGLFTLGDFENLLAKEQAEKEQREALEKAQQNY
                     LEKLVAERDQAVKNAENSANELEVARQALETAKQAHQQAEEELNKELSKTQEQLKQST
                     EALSRLIIKQNNPFSEHYVVQLNLMEQATYDLYRRLAEIEHTQDWNLWLSDSLSKYRL
                     KNRSTEDYHLLHIGLDHQVSHNWSIGGVFGISQGQIENRTHKVKGTSAGIYAGYRPTS
                     GLFWTNFFNYSHFTNQSGVTKRDNNAYSLSSEIGRNIVMSHQWQITPKLQLGWAKAGS
                     ARMFWAGTGLRLGKVIELNAIKLKPYADISYRFRNRHIDTLDSLSDRHRNVISIGIQA
                     VGNRHYFAIEGSMLHGDALKRSYGLHANYHYQW"
     gene            2237..3355
                     /locus_tag="PXA71_002125"
     CDS             2237..3355
                     /locus_tag="PXA71_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDL5106201.1"
                     /translation="MKKIKTTLSALALSLSLISVNSWAIPADYLSQDNISQYDKAFNF
                     VLAKVLPAPKGKEDGRGAPIEHLVIQYAPDYVDDPYLKEDVLNFRRWYWQAMYASLDQ
                     KVKEKPTYLNTYRLQAEAYFVNKEYREALSQLDQILRQNPRDIHALAMTVLASRVLED
                     TEQETARLSALKQLAPEVAQRMTDFFAFTEQTLAASYGNEPQTAMIPDTIAVFGSTPN
                     KDGTPSPLLLDRLQKTKEMAQKFPQAKIIVSGGAVKTEFAEADVMAKWLSENGIEKDR
                     LLLDPVARDTPGNAVGIIKLMQTYNGKKVLGIGTLQHIPRATAVLKGYAQHIGYPIEM
                     DSVGGGKPATPGKAKIEALYTYVNVARSMGLFELGDFK"
     gene            complement(3416..4678)
                     /gene="rho"
                     /locus_tag="PXA71_002126"
     CDS             complement(3416..4678)
                     /gene="rho"
                     /locus_tag="PXA71_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017492510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDL5106202.1"
                     /translation="MHLTQLKNTPVSKLVEMGENQMGLENLARLRKQDIVFAILKQHA
                     KSGEDIFGQGVLEILPDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLQTGDKIEGKI
                     RPPKEGERYFALLKVDSVNDDKPEASRSKILFENLTPLHANSRLKMERGNGSKEDLTA
                     RILDLAAPIGKGQRALIVAPPKAGKTVLLQNIAQSITHNHPECELIVLLIDERPEEVT
                     EMQRTVRGEVIASTFDEPATRHVQVAEMVIEKAKRSVEHKKDVVILLDSITRLARAYN
                     TVTPVSGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATALVDTGSKMDEVIFE
                     EFKGTGNMELHLSRRIAERRIFPAIDFNRSGTRKDDLLMAADELQKTWMLRKVLNPMD
                     EVDAIEWLIDKLMMAKTNEEFFEIMKRS"
     gene            complement(4864..5811)
                     /gene="cysK"
                     /locus_tag="PXA71_002127"
     CDS             complement(4864..5811)
                     /gene="cysK"
                     /locus_tag="PXA71_002127"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015939738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HDL5106203.1"
                     /translation="MTIYADNSYSIGNTPLVRLKNFGNGNIVVKVEGRNPSFSVKCRI
                     GANMVWQAEKDGILTKDKEIVDATSGNTGIALAYVAAARGYKLTLTMPETMSTERKRL
                     LRGLGVNLVLTEGAKGMKGAIAKAEEIAASDPDRYVTLKQFENPANPAIHQQTTGPEI
                     WDATEGKIDVLVAGVGTGGTITGVSRAIKQDKGKQIISVAVEPSESPVITQTLNGEEV
                     KPGPHKIQGIGAGFIPKNLDLSLLDRVEQVSSEEAITTARRLMAEEGILGGISSGAAV
                     AAADRIAKLPEFADKLIVVILPSASERYLSTLLFEGIEA"
     gene            complement(5985..7481)
                     /gene="pepA"
                     /locus_tag="PXA71_002128"
     CDS             complement(5985..7481)
                     /gene="pepA"
                     /locus_tag="PXA71_002128"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HDL5106204.1"
                     /translation="MEFSVKNGSVEKQRTACLVVGVYEPRRLCSAAEQLDKLSNGYIS
                     TLLRRGDLEGKAGQTLLLHNVPNVLADRVLLVGCGKERELTERQYKQIIQKSVQTINE
                     TGSMEAVSFLTELHVKGRTPYWNVRFAVEAIQEQLYAYNDFKSIKPEVRRELRRVIFN
                     VAHRKDLPDAERALEHGKAVALGISHAKNVANCPPNVCNPHYLAELAKGLAYDYPAIS
                     TTIVDEKQMAELGMNAYLAVSRASENEAFLSVIEYKGNPNADAKPIILVGKGMTFDSG
                     GLSIKPAEAMDEMKYDMCGAATVYGTIKAIAEMKLPLNVIGLLAGCENAVDGKAYRPG
                     DILTTMSGLTVEVLNTDAEGRLVLCDALSYVERFEPELVIDIATLTGACMIALGNHNS
                     GLMSPHNGLANELLAAAEQADDKAWRLPLGEEYQEQLKSNFADLANIGGRLGGACTAG
                     QFLSNFTKKYTWAHLDIAGTAWKSGAAKGATGRPVSLLTQFLINKAQV"
BASE COUNT         2178 a         1519 c         1628 g         2237 t
ORIGIN      
        1 ttatccttaa tcaactttgt tggttagatg taaaaagtta taaatacttc ttcacccaat
       61 ataaggagaa atcataatga aacgcttgcg ttattcttat cttgctttga tattaggttc
      121 agccttacct ttatcggctt atgctgacgg ttatttaagt aacgataata ttcggcaatt
      181 tgatgcccgt tttaattttt tcctcgcaaa tccactacct gcgcctattg caaaagcaga
      241 tgggcgtggt gaagcgattg agaatttggt ggtgaaatat gcatcagatt atcttaatga
      301 tatctatctt aaagaggatg ttattcgttt tcgccgttgg cagtggcaag atctctatac
      361 gtcattggat ttaaaaacga aacaaaagcc cgattattta aatacttacc gattacaggc
      421 ggaagcgtac tttatcaata agcaatacca agaagcatta tctcaactgg atcaaattct
      481 gcggcgtaac cctaatgatg ttcatgcaat ggcaatgagt gtggttgcaa gtcgggtatt
      541 ggaaaatcct aatactgaag ccgagcgttt attagcgctt tatcaaatct ctccaagtat
      601 tgcgcaaaag gtgcagcaat atctacattt tacagacact atgcttgctg ccagctatgg
      661 tagtgagcct caaacaacaa tgatccccga caccatagcg gtatttgggc aatcgcctaa
      721 cccagacggt actccaagca agggattatt gcaacgtctt gagaaaacca aagaaatggc
      781 agagaaattt ccgaatgcaa aaattatttt aagtggtgga cctgttcgtt atatctatgc
      841 agaagcggat gtaatgaaaa aatggttgat agagaatggc gttgatgaaa gcagactgtt
      901 gcttgatgat gtggcacgag atactccggg aaatgctgtc ggtatcattg attttatgaa
      961 ggaatatgga ggtagaaaag tattggggat cggtacgatc ttacatttac cgagagcaat
     1021 gtctgtattg aaaagctatg cggattccat tggatatgaa ttggaaattg attctgccgg
     1081 aggcggttct cctcctaatg aaaaaaataa aaaaggtgaa gctctttata catttgttaa
     1141 tgttgctcgt gcaatggggt tatttacctt gggcgatttt gagaatttgc ttgccaaaga
     1201 acaagctgaa aaagaacaaa gagaagcgtt ggaaaaagca cagcagaatt atttagaaaa
     1261 attggtagct gagcgagatc aagcagtaaa aaatgcagaa aattctgcaa atgagctgga
     1321 agtagccaga caggcgttag aaacagcaaa acaggctcat cagcaagctg aagaggaatt
     1381 gaataaagaa cttagtaaaa cgcaagagca gttaaaacag agtacggaag cccttagtcg
     1441 tttaataata aagcagaaca atcctttttc cgagcattat gttgtacagc ttaatttgat
     1501 ggaacaagca acttatgatc tgtaccgtag gttagcagaa atagaacata cacaagattg
     1561 gaatttatgg ctttcggata gtctatccaa atatcgttta aaaaatcgtt caaccgaaga
     1621 ctatcactta ttacatatcg ggctagatca tcaggtttcc cataattggt ctattggtgg
     1681 agtatttggt atcagtcagg ggcaaattga gaataggacg cataaagtga aagggacatc
     1741 tgctggtatt tatgctggtt atcgtcctac aagtggtctg ttttggacaa atttttttaa
     1801 ttacagtcat tttactaatc aatctggtgt aacaaaacga gataataatg catacagtct
     1861 gagtagtgaa attggaagaa atatcgtgat gagtcatcaa tggcaaatta cgccaaagct
     1921 gcaattaggc tgggcaaaag ctggatcagc acgaatgttt tgggctggga cagggctacg
     1981 tttaggaaaa gtgattgaac tcaatgcaat caaacttaaa ccttatgctg atattagcta
     2041 tcgttttcga aatcgtcata ttgatacctt agatagttta tctgatcgtc atcggaatgt
     2101 aatcagtatt gggatacaag cagttggaaa tcgccattat tttgcaatcg aaggatcaat
     2161 gttacacggg gatgcattga agcgttcata cggattacac gcaaattatc actatcaatg
     2221 gtaaatagga gcctctatga aaaaaatcaa aacaaccctt tctgcccttg ctttaagcct
     2281 ttctttgata agtgtaaata gctgggcgat accagctgat tatttgagcc aagacaatat
     2341 cagtcaatat gataaggcgt ttaactttgt attagcaaaa gtactgcctg caccaaaagg
     2401 taaagaagat ggtcgaggag cgccgattga gcatttagtt attcaatatg cgccagacta
     2461 tgttgatgac ccttatctaa aagaggatgt gctgaatttc cgccgttggt attggcaagc
     2521 gatgtatgct tcgcttgatc agaaagttaa agagaagccg acctacctta acacttaccg
     2581 tttacaagca gaggcgtatt tcgtcaataa agagtatcgg gaagcacttt ctcagctcga
     2641 ccaaattttg cgccaaaacc cccgtgatat tcacgctctt gcgatgacag tattagcttc
     2701 aagggtgcta gaagatactg aacaagaaac ggctcgtctt tctgcactga aacagcttgc
     2761 tcccgaagtc gcacaacgaa tgacagactt ttttgccttt accgaacaaa cgctggcggc
     2821 aagctacggt aatgaaccac agacagcaat gatccctgat acgattgccg tttttggttc
     2881 tacgccaaac aaagacggca caccttcgcc gctgttgtta gatcgattac agaaaaccaa
     2941 agagatggca caaaaatttc cgcaagcaaa aattatcgtc agtggcggtg ctgtgaaaac
     3001 ggaatttgct gaggctgatg tgatggcaaa atggcttagc gaaaatggta ttgaaaaaga
     3061 ccgtttgcta cttgatcctg ttgccagaga taccccggga aatgcggttg ggattatcaa
     3121 gctgatgcaa acttataatg gcaagaaagt attaggtatc ggtacgttac aacatatccc
     3181 tcgtgcaaca gcggttctca aaggttatgc acagcacatt ggttatccga ttgagatgga
     3241 ttccgttggt ggtggcaagc cggcaacacc gggaaaagcc aaaatcgagg cactttatac
     3301 ttatgtaaat gtggcgagat caatggggtt gtttgagttg ggggatttta agtagttact
     3361 ttattgacag ctgctattga taaaaatccc gcgttaagcg ggattttttt atgttctacg
     3421 aacgtttcat aatctcgaaa aactcttcgt tagtttttgc catcattaat ttgtcgatta
     3481 gccattcgat agcatctact tcgtccattg ggttgaggac tttgcgtaac atccaagttt
     3541 tttggagttc gtctgctgcc attaagaggt catctttacg agtacctgag cggttgaagt
     3601 caatagccgg gaagatacgg cgttcagcaa tacggcgtga gaggtgtaat tccatattac
     3661 ccgtaccttt gaactcctcg aaaatcactt cgtccatttt tgatccggta tccacaagtg
     3721 cggttgcgat aatggttaag ctgccacctt cttccacatt acgggctgca ccgaagaaac
     3781 gttttggacg atgtaaggcg ttagcgtcca caccaccgga aaggattttg ccggaaaccg
     3841 gggtaacggt gttgtaggca cgggctaaac gagtgatgga gtctaataaa atcaccacat
     3901 cttttttatg ctctaccgag cgttttgctt tctcgattac catctccgca acttgaacgt
     3961 ggcgggttgc cggttcatca aaggttgagg caattacttc accacgtacg gtgcgttgca
     4021 tctctgttac ttcttccgga cgctcatcaa ttaataatac gataagctca cattcaggat
     4081 gattatgggt gatgctttgt gcaatatttt gcagtaacac ggttttacca gcttttggcg
     4141 gggcaacaat taacgctcgc tgacctttac cgattggggc ggctaaatct aaaatacgag
     4201 cggttaaatc ttcttttgat ccattgccac gctccatttt taagcgagaa ttggcgtgca
     4261 gaggggttaa gttttcaaag agaattttac tgcgagaggc ttccggtttg tcatcattaa
     4321 ctgaatcaac tttcagtagg gcaaaatagc gttctccctc ttttggtggg cgaattttac
     4381 cttctatttt atcgccagtt tgtaagttaa aacggcggat ttggcttgga gaaacataaa
     4441 tatcatcagg gccggctaaa tatgagctat ctgatgagcg gaggaaaccg aagccgtccg
     4501 gtagaatttc aagcacgcct tgcccgaaaa tgtcttcacc gctttttgcg tgttgtttaa
     4561 gaatagcaaa tacgatgtct tgtttacgta aacgagccag attttctaag cccatttgat
     4621 tttcacccat ttccacaagc tttgaaacag gggtgttttt aagttgagta agatgcataa
     4681 tttgaatgta aaattgtgat taattaagat tggatttgtt gatattgatt agatacggcc
     4741 aaccgtaaag atgtggcgaa gaataacgca ataggagaca aattgcaaat tttttataaa
     4801 aaataaccgc ttgtttgcaa taaaaatgcc gacatcagcc ggcattttta tattaattta
     4861 atattacgct tcaatccctt caaacagtag cgtacttaaa taacgctctg aggctgaagg
     4921 cagaatcact acaattaatt tatcggcaaa ttcaggtagt ttagcgatgc gatctgcggc
     4981 agcaacggca gcacctgatg aaataccgcc taaaatgcct tcttctgcca ttaaacggcg
     5041 tgcggttgta atcgcttctt cgcttgaaac ttgttcaaca cggtcaagca gtgataaatc
     5101 taagtttttc ggaataaagc ctgcaccaat gccttgaatt ttgtgcgggc ccggtttgac
     5161 ttcttcaccg tttaaagttt gcgtaatgac cggcgattca ctcggttcta ccgccactga
     5221 aataatttgc ttgcctttat cttgcttaat agcacgggaa acaccggtaa tagtgccacc
     5281 tgttcctacg cctgccacta atacatcaat tttaccttca gttgcatccc aaatttcagg
     5341 accggtagtt tgttggtgaa ttgccgggtt tgccgggttt tcaaactgtt ttaaggtaac
     5401 atagcgatct gggtcggaag ccgcgatttc ttcagctttc gcaatcgctc ctttcattcc
     5461 ttttgcccct tcggttaaga ctaaatttac tcctaagcca cgcaataagc gtttacgctc
     5521 ggtactcatt gtttccggca ttgtgagcgt taatttataa ccacgagcgg ctgctacata
     5581 agccaaggca attccagtgt taccgctggt tgcatctaca atttctttgt ctttggttag
     5641 aataccgtct ttctctgctt gccacaccat attcgcacca atacggcatt tcacgctaaa
     5701 acttgggtta cgcccttcca cttttaccac aatattgccg ttgccaaaat tctttaaacg
     5761 caccagcggg gtattgccga ttgagtatga gttgtctgca tagatagtca tagtgatatt
     5821 ccttaataag tattgagatt gggatttatc atacttattt ttaatcgctt ttctagtagc
     5881 tggaatttat ttgatataac taaaaagaat ataggggcgt atgaagagga tcggtctgat
     5941 tttctttttg caaaaactcg ataaaatcag accgcttgtg agagttagac ctgggcttta
     6001 ttgatcaaaa attgtgttag taaggatacc ggtctgccgg tcgccccttt ggctgcccca
     6061 gatttccaag ccgtgccggc aatatctaga tgcgcccaag tatatttctt tgtaaagtta
     6121 gagaggaatt gaccggcagt acaggctccg cctaaacgtc cgccgatatt agcaagatca
     6181 gcaaagttag attttaactg ttcttgatat tcttccccta aaggtaaacg ccacgctttg
     6241 tcatcggctt gctctgcggc agctaagagt tcgtttgcta aaccgttatg aggtgacatc
     6301 agcccgctgt tatgattacc taaggcaatc atgcaagcac cagttagggt agcaatatca
     6361 atcactaatt ccggttcaaa acgttctaca tagctgagag catcacatag cactaaacgt
     6421 ccttctgcat cggtgttgag tacctcaacg gttaaaccag acattgtagt gagaatatcc
     6481 cccggtcgat aggctttgcc atcaaccgca ttttcacagc cggcgagtaa gccgataaca
     6541 ttgagtggta atttcatctc ggcaattgct ttgattgtac cgtaaacagt agcagctccg
     6601 cacatatcgt atttcatttc gtccatcgcc tccgcaggtt taatggataa accgccagag
     6661 tcaaaggtca ttcctttgcc gactaagata atcggcttcg catcagcatt cgggttgcct
     6721 ttatattcaa tcactgaaag aaaggcctca ttttcagagg ctctggaaac cgctaagtaa
     6781 gcattcattc ccaattctgc catctgtttt tcatcaacaa tggtagttga aatggcagga
     6841 tagtcgtagg ctaaaccctt agccaattcg gctaaatagt gaggattaca cacattaggc
     6901 ggacaatttg ctacattttt agcgtggctg attccaagtg ctacggcttt tccgtgttct
     6961 aaagctcgtt cggcatcagg aagatcttta cggtgtgcga cattaaaaat cacacggcgt
     7021 aattcacggc gaacttcagg tttgatgctt ttgaaatcgt tataggcata tagttgttct
     7081 tggattgcct ctaccgcaaa tcgcacattc caataaggtg ttctaccttt aacgtgcagt
     7141 tcggttaaaa agctgacagc ttccattgaa ccggtttcat taatagtttg tacacttttt
     7201 tgaataattt gtttgtattg gcgttcagtt aattcacgct cttttccaca gccgactaat
     7261 aatactcgat cagcgagtac attcggcaca ttatgcaaga gtaaggtttg ccctgctttg
     7321 ccttctaaat ctcctcttct cagtaatgtg ctgatatagc cgttacttaa tttatcaagc
     7381 tgttctgcgg cagaacataa tcggcggggt tcatagacac caacaaccaa acaggcggtt
     7441 ctttgtttct caacactgcc atttttgaca ctaaattcca tttttcctcc ttaattttta
     7501 ttgctacaga ttttataatg ccaacataat catcaatgat aagtaaaata tagatatacc
     7561 ct
//
LOCUS       DANLRW010000113         6955 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.114, whole genome shotgun sequence.
ACCESSION   DANLRW010000113 DANLRW010000000
VERSION     DANLRW010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6955)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6955)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6955
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.114"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..284
                     /locus_tag="PXA71_002129"
     CDS             <1..284
                     /locus_tag="PXA71_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL5106205.1"
                     /translation="SITQDPTEFVIYFKGLGTTIEFNINDILKKIFAKHQLSITQQHK
                     NEVLEKIKGDLLKMDLGNSVLGLKHIELRFEDNIGYIVESISTQYIMLK"
     gene            complement(327..3356)
                     /locus_tag="PXA71_002130"
     CDS             complement(327..3356)
                     /locus_tag="PXA71_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4981 domain-containing protein"
                     /protein_id="HDL5106206.1"
                     /translation="MSLPNYYQDPSVLHLNTTLHHAYFIPFAKGQTPNQLEREQSELF
                     TLLNGDWKFNFYPSPHDLPEDFLNTKFTHQIPVPSNWQTQGFDAHQYTNINYPIPFDP
                     PYVPHQNPCGVYQREITFNPKPNKRYLLNFEGVDSCLFVYVNGEFVGYGQISHSTNEF
                     DITKQLKQGKNSLVVVVLKWCDGSYLEDQDKFRMSGIFRDVYILEREQNYLQDFFIRY
                     QLNADLSKAELKVETQFSTYTEAVHFQLFDPENRLVCEQTSGDFCQEICNLCLWNAED
                     PTLYTLCLSYQNEIIEQKIGFRQIRVENGVMLFNNAPIKFKGVNRHDSDPKTGYSISR
                     EQALVDLRLMKAHNINAIRTAHYPNAPWFSELCDQLGFYLIAESDLESHGSSAVYIES
                     PENSIFLNVPNPNKQEEIRQQAVDNFCYFARDPLFKQAILDRNIANVERDKNRTSVII
                     WSLGNESGFGENFEVAARWVKQRDPSRLTHYEGSIYQHSAHQNDLSNLDLYSEMYPST
                     ERLEEYFSDSANHKPFILCEYSHAMGNSSGDMEDYWQTFQRYSGACGGFVWEWCDHAP
                     LLPNSELSAEQKTEKYGYGGDFGETLHDGNFCMDGLVSQQRVPHSNLLEVKNVNRPVR
                     AELKAGKIWLKNQLDFSDLADYLTVHYCFSENGETTLQGQCLVNCQPNQTACLPLTLP
                     EPNGKLQLLTLDYSLNESTALLEKGHHLGFDQITLHQAMVTPALNPRPQAVIFVQDFA
                     NEWRIQQGDYRYTFDKLKGIFSRIEKNGEAVIEQPLDFNIWRAPTDNDRLIREFWKKA
                     GYDNCYTRAYHTELMQDKNGVNITAECGIVATAQSRILTLKVNYHLAPNGEMTIQVQA
                     TRPAHLPFLPRFGLRFFLNKRNNQVSYFGYGEQESYIDKYHLAKLGAYQTSARENHTD
                     YLKPQENGSHFGTHYVQANGITVTSPQPFSFNLSPYTQEELTTKSHSYDLVESPSTVL
                     CVDYKMSGIGSNSCGPNLKPQYRLNETNFEWLLKLSF"
     gene            3534..4391
                     /gene="menB"
                     /locus_tag="PXA71_002131"
     CDS             3534..4391
                     /gene="menB"
                     /locus_tag="PXA71_002131"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005723289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HDL5106207.1"
                     /translation="MLYPSEEFLYAPVEWVDHSEGYTDIRYHKSKDGIAKITINRPEV
                     RNAFRPQTVKEMIEAFSDARFDEKIGVIVLTGEGEYAFCAGGDQKVRGDYGGYKDESG
                     VHHLNVLDFQRDIRTCPKPVVAMVAGYAIGGGHVLHMLCDLTIAADNAKFGQTGPKVG
                     SFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLINTVVPYADLEKETVRWC
                     REMLQNSPIALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKREP
                     DFSKFRRNP"
     gene            4474..6876
                     /gene="mrcB"
                     /locus_tag="PXA71_002132"
     CDS             4474..6876
                     /gene="mrcB"
                     /locus_tag="PXA71_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1B"
                     /protein_id="HDL5106208.1"
                     /translation="MSDVELNEQSEQEPEQKPKKRNYFLSTLFKIGVIGACSMAFYGI
                     YLDGKIRSKMDGQIWELPAEVYARIESIKIEDNLTLEQTKQALLDNGYRQVSQVATPG
                     DFKIEENQLVLLRRAFPFPETPESQRVLRLTFKQDKLTYIEDLVQGKLIEEFRLDPKL
                     LALLHSDSDEERQALRLQQYPRLLIESLILTEDRRFYQHDGISPIGIARALITNYQAG
                     RTVQGGSTLTQQLVKNLFLSNERSLVRKVNEALMSVILDFRYDKNRILETYLNEIYLG
                     QNGSYQIHGFALASQFYFGRPIQEISLDQIALLVGMVKGPSLYNPWRNPQGAVERRNV
                     VLRLLLDHQVINQELYALLSSRPLNIREKGTIYREQPAFMQALTIDLKNELGEIKSAQ
                     LSGTKIFTTLDRKQQRSAEQAVITGLEDLESKNKKVSDLQSAIVVAEYRTGKVRAIVG
                     DRLTQFAGFNRAIQSKRQIGSLVKPSVYAIALAQPELFRLNTPIQNKQISIKVGSTYW
                     TPRNYDRSFSGSVMLMDALVRSLNIPTVNIGMKVGLKKVIAKQKEMGWDNAEIPPYPS
                     TLLGSYSISPYDVTRSYQVIANEGLKTPLTTIEAIISHNGEMFYQRDSGKVSEQVLPP
                     EAAVQTMYAMQQVVERGTARSLQNDFAKLKLAGKTGTTNNARDTWFVGIDGEHVTTVW
                     LGKDNNGDTNLTGSSGALYVYKQYLERALPQAYRLPKLNTMQWVGINSYGSWNCDSGR
                     QIPVWRDKGQRYCTSAGNVVATEKPSVWDALSLKKENIEAKAEEAEGKQPIPTEEVAP
                     IE"
BASE COUNT         2023 a         1420 c         1591 g         1921 t
ORIGIN      
        1 cttcaataac acaagatcct actgaatttg ttatctactt taaaggactt gggactacta
       61 ttgaatttaa cattaacgat attttgaaaa aaatctttgc taaacatcag ttatctatta
      121 cccagcaaca caaaaatgag gttttagaaa agattaaagg cgatttactc aaaatggatt
      181 taggaaattc agtacttggg cttaagcata ttgagttaag atttgaagac aatatcggct
      241 atatagtaga aagtattagt acacaatata ttatgctgaa ataaaaggag atgctcgttc
      301 aattaaattt gaacgagcat ttttcgttaa aaactcaatt taagcagcca ctcaaaatta
      361 gtctcattta accgatattg cggtttcaaa ttcgggccgc aagagtttga gccaatgccg
      421 ctcattttgt aatcgacaca cagcacggtg gaagggcttt ctaccaaatc ataactgtgg
      481 cttttagtgg ttagctcttc ctgtgtgtaa ggcgaaagat taaaactaaa cggctgtgga
      541 gaagtaacag ttatcccatt tgcttgcaca taatgcgtac cgaaatggct gccgttttcc
      601 tgcggtttga gataatcggt atgattttct cgggcgctgg tttgataagc tccgagtttc
      661 gccaaatggt atttgtcgat ataactctcc tgctcgccat agccaaaata gctcacttgg
      721 ttattccgtt tattcaagaa aaaccgcaag ccaaagcgag gtaaaaacgg caaatgagcg
      781 gggcgggttg cctgaacctg aatcgtcatt tcgccattcg gggcaagatg ataattcact
      841 ttcagggtta aaatccgact ttgagcggtt gccacaatgc cacattcggc agtaatgttt
      901 acgccgtttt tatcttgcat cagttcggta tgatacgccc tggtgtaaca gttatcgtag
      961 ccggcttttt tccaaaactc acgaattaag cggtcgttat cggttggggc tcgccaaata
     1021 ttgaaatcca acggttgctc aattactgcc tcgccgtttt tctcaatccg gctgaaaatg
     1081 cctttgagtt tatcgaaagt gtagcgatag tcgccctgtt gaatccgcca ttcatttgca
     1141 aaatcttgca caaaaatgac cgcttgcggg cgtggattaa gtgctggagt gaccatcgct
     1201 tgatgcagcg tgatttggtc aaagcctaag tgatgccctt tttccaacag agccgtgctt
     1261 tcatttaaag aataatcaag ggttaaaagt tgcaatttgc cgtttggttc gggcagcgtt
     1321 agcggcaaac aagcggtctg atttggctga caatttacca aacattgtcc ctgcagggtg
     1381 gtttcgccgt tttcgctgaa acagtaatgc acggtcagat aatcagctaa gtcgctgaaa
     1441 tccaactgat ttttcagcca aattttgccc gcttttaact cagctcgcac cgggcgattc
     1501 acatttttca cttctaacaa attagagtgt ggcacacgct gttgggaaac caagccgtcc
     1561 atacagaaat tgccatcgtg caaggtttcg ccgaaatcac cgccatagcc gtatttttcg
     1621 gtcttctgtt cggcacttag ctcagagttg gggagcagag gagcatggtc gcaccattcc
     1681 cacacaaagc caccgcacgc accgctgtag cgttggaagg tttgccaata atcttccata
     1741 tcaccactcg aattgcccat cgcgtgagaa tattcacaca aaataaaagg tttgtggttg
     1801 gcagagtcgg aaaaatattc ctctaaccgc tcggtgcttg ggtacatctc gctgtataaa
     1861 tcgaggtttg aaagatcgtt ttgatgtgcc gaatgttggt aaatcgaacc ttcgtagtga
     1921 gttaaacggc ttggatcccg ttgttttacc caacgggctg cgacttcaaa attttcacca
     1981 aagccggatt cgttaccaag tgaccaaata atgaccgaag tgcggttttt gtctcgctcc
     2041 acattggcaa tgttgcgatc taaaatcgcc tgtttgaaca gcggatctct tgcaaaataa
     2101 cagaaattat cgaccgcttg ttggcgaatt tcttcctgtt tgttcgggtt tggcacattc
     2161 aggaaaatgc tgttttccgg actttcaata tacactgcac tggagccgtg agattcaaga
     2221 tcactttcgg caatcagata aaaaccgagc tgatcgcaca attcactaaa ccacggagcg
     2281 ttcgggtaat gggcggtgcg aatagcgttg atgttatggg ctttcattaa gcgtaaatcc
     2341 accaacgctt gctcacggct aatgctgtag ccggttttcg ggtcggaatc gtggcggttt
     2401 acccctttaa atttaatcgg ggcgttgttg aatagcatca cgccattttc cacacgaatc
     2461 tgacgaaagc cgattttttg ctcaataatt tcgttttggt agctcaagca tagcgtgtag
     2521 agtgtcggat cttccgcatt ccacaaacac aaattgcaaa tttcttggca aaaatcaccg
     2581 cttgtttgct cgcagactaa gcggttttca gggtcgaaaa gttgaaaatg cacagcttcg
     2641 gtgtaggtgg aaaattgtgt ttccaccttg agttctgcct ttgaaagatc agcgtttaac
     2701 tggtagcgga taaagaaatc ttgcaggtag ttttgctcac gttccaaaat ataaacatca
     2761 cggaaaatgc ctgacattcg gaatttgtct tgatcttcca aataactgcc gtcacaccat
     2821 tttagcacca ccacgacgag gctgtttttg ccctgtttaa gctgtttggt gatgtcaaat
     2881 tcattggtgc tgtggctgat ttgcccgtag ccgacaaatt cgccgtttac ataaacaaac
     2941 aggcacgaat ctacgccctc aaaatttagc aaatagcgtt tgttaggctt ggggttaaac
     3001 gtgatttcac gctgatacac cccgcaaggg ttttggtgtg gcacataagg cggatcaaac
     3061 ggaatcgggt agttgatgtt agtgtattga tgggcatcaa agccttgagt ttgccagtta
     3121 gacggcacgg ggatttggtg ggtaaatttg gtgttgagga aatcctccgg cagatcgtgc
     3181 ggacttggat agaaattaaa cttccaatcg ccatttagca aagtaaataa ctcagattgt
     3241 tcccgttcca actgattcgg cgtttgccct ttagcaaaag gaataaaata agcgtggtgt
     3301 agcgtggtat taaggtgcaa cacactcggg tcttggtagt aattcggtaa cgacataaaa
     3361 gccctatgat caaaaagata taaatacgaa tacactttaa ttctcttata aaatagggca
     3421 atcaactatg tgaaaaattg tgaggcggat cacaaaataa tttcctcacc tttttccttc
     3481 gattccgtta taatcacaag aattttttat gtcatttttc aaggaattta ccaatgttat
     3541 atccaagcga agaattttta tatgcaccgg ttgagtgggt tgatcacagc gaaggttaca
     3601 ccgatattcg ttaccataaa tcaaaagacg gtatcgctaa aatcaccatt aatcgtccgg
     3661 aagtgcgtaa tgctttccgt ccgcaaacgg taaaagagat gattgaagcc ttttctgatg
     3721 cccgttttga tgaaaaaatc ggcgtcatcg tattaaccgg tgaaggcgaa tatgcgttct
     3781 gtgccggcgg cgaccaaaaa gtgcgtggcg attacggcgg ctacaaagat gaaagcggtg
     3841 tgcatcactt aaatgtgttg gatttccaac gtgatattcg tacctgcccg aaaccggtgg
     3901 tggcaatggt tgccggctat gcgattggtg gtggacacgt tttacatatg ttatgtgatt
     3961 taaccattgc cgctgacaat gcaaaattcg gtcaaaccgg cccgaaagtg gggtcatttg
     4021 acggcggttg gggtgcaagc tatatggcac gtttagtcgg tcagaaaaaa gcgcgtgaaa
     4081 tttggttctt atgccgtcaa tataatgcac aagaagcgtt agatatgggc ttaatcaata
     4141 ccgttgtgcc ttatgctgat ttagaaaaag agactgtgcg ttggtgtcgc gaaatgctac
     4201 aaaacagccc gattgcctta cgttgcttaa aagcagcatt gaatgcagat tgtgacggtc
     4261 aggctggcct gcaagagctt gctggtaatg caacaatgtt gttctatatg acagaagaag
     4321 ggcaagaagg acgcaatgcg ttcaacgaga aacgtgagcc ggacttcagc aaattccgcc
     4381 gcaatccata attgacggca aatacaagcg gttcgatttt gcaaaaaatt tgcaaaaatc
     4441 gaccgcttac cttttctaat ttaagttaat tttatgtcag atgttgagtt aaacgagcag
     4501 agcgagcaag agcctgagca aaaaccgaaa aagcgaaact atttcctttc aaccttattc
     4561 aaaatcgggg tgataggagc ttgcagtatg gctttttacg gcatttattt agacggtaaa
     4621 atccgtagca aaatggatgg gcagatatgg gaattaccag ctgaggtgta tgctcgtatt
     4681 gaaagcatta aaattgaaga caacttaacg cttgagcaaa ccaaacaagc gttgctggat
     4741 aacggctatc gtcaagtttc tcaagttgcg acaccaggcg atttcaaaat tgaagaaaat
     4801 cagctggtgt tgctacgccg agctttcccg tttccagaaa caccggaatc gcaacgagtg
     4861 cttcgtttaa ctttcaaaca agataaatta acttatattg aagatttggt gcagggtaag
     4921 ttgatcgagg agttccgctt ggatccgaaa ttactggcgt tactgcattc cgatagcgat
     4981 gaagaacgtc aagcattacg cttacaacaa taccctcgct tgttaattga gtcactgatt
     5041 ttaaccgaag atcgccgctt ttatcagcac gatgggatta gcccaatcgg tattgcccgt
     5101 gctttaatca ctaactacca agctggcaga acagtgcagg gtggcagtac cttaacgcaa
     5161 cagttagtga aaaacttgtt cttaagtaat gaaagatcgt tggtgcgtaa ggtaaatgaa
     5221 gcgttaatgt cggtgatttt agacttccgt tacgataaaa accgcatttt agaaacctat
     5281 ctcaacgaaa tttatttagg gcagaacggt agctaccaaa ttcacggttt tgcattggca
     5341 agccaattct attttggtcg tccgatccaa gagattagct tagaccaaat tgcgttattg
     5401 gtgggaatgg taaaaggtcc atcactgtat aacccgtggc gaaatccgca aggtgcggta
     5461 gagcgacgta atgtggtgtt gcgattattg ctggatcatc aagtgatcaa tcaagaactt
     5521 tacgctctgt taagctcccg cccgcttaat attcgtgaaa aaggcacgat ttaccgtgag
     5581 caacctgcct ttatgcaggc attaaccatt gatttgaaaa atgagttagg cgaaattaag
     5641 tcagctcaac tttccggtac taaaattttt acgacccttg accgtaaaca gcaacgttca
     5701 gccgaacaag cagtgattac cggtttggaa gatctggaaa gtaaaaataa aaaagtcagc
     5761 gatttgcaat cggctattgt cgtggcggaa taccgcacag gtaaagtgag ggcgatagta
     5821 ggagaccgct taacccaatt tgccggcttt aaccgtgcga ttcagtcaaa acgccaaatc
     5881 ggttctttag tcaaaccatc ggtttatgcg attgccttgg cacagcctga attattccgt
     5941 ttaaatacac cgatccaaaa taaacaaatt tcaattaagg ttggttcaac ctactggaca
     6001 ccccgtaact acgaccgcag ttttagtggc tcggtgatgt taatggacgc cttagtccgc
     6061 tctctgaata ttccaacggt gaatattggt atgaaagttg gcttaaaaaa agtcattgcc
     6121 aaacaaaaag agatgggctg ggataatgcg gaaattccgc cttacccatc aaccttgcta
     6181 ggttcatatt cgatctcgcc ttacgatgta acccgctctt atcaagtaat tgccaacgaa
     6241 gggctgaaaa caccattaac caccattgag gcgattattt cgcacaatgg cgaaatgttc
     6301 tatcagcgag atagcggcaa agtgagcgag caggtgcttc caccggaagc tgcggttcaa
     6361 acaatgtatg cgatgcaaca ggttgtggaa cgaggtacgg ctcgtagctt acaaaacgat
     6421 tttgccaaac tgaaattagc cggcaaaacc ggtacaacca ataacgctcg agatacttgg
     6481 tttgtgggaa ttgatggcga acacgtcaca accgtctggc tgggtaaaga taacaatggg
     6541 gataccaacc tcaccggttc aagtggtgca ttgtatgtgt ataagcaata tcttgagaga
     6601 gccttgcctc aggcgtatag attaccgaaa cttaatacga tgcaatgggt ggggattaat
     6661 agctatggta gctggaattg cgatagtggc agacaaattc cagtttggcg agataaaggg
     6721 caacgttatt gtaccagtgc aggtaatgta gtggctacag aaaaaccaag tgtttgggat
     6781 gcactttcgc tgaaaaaaga aaatatcgag gctaaagcag aagaagctga agggaagcaa
     6841 ccaatcccta ctgaagaagt tgcaccaatt gaataaaaat aaatttgata gccattatca
     6901 ttcaagatac acaagctgat agattctacc tataaaaagt atatattata actat
//
LOCUS       DANLRW010000114         6641 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.115, whole genome shotgun sequence.
ACCESSION   DANLRW010000114 DANLRW010000000
VERSION     DANLRW010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6641
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.115"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..1995
                     /locus_tag="PXA71_002133"
     CDS             <1..1995
                     /locus_tag="PXA71_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5106209.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAGSFGRGLMGAGVGIAAGAAMARQPARNQMEFDRQLAMVANTAFSDRDVKGRI
                     DGKRELLDAVQKAVSVGGGSKEEALSSLDALLASGAVSTETALNLLPTLQKGAVATGA
                     SANDMAQIAISSMQQFGIKEEDIGRVLDMAVAAGQAGSFELADMASWLPQQMAAAKQA
                     GLSGIEGFERLLIANQQARVTAGTSNEAGNNLVNLLGKITAKETNERFKNIEYKDPKT
                     GKTKAIDFAKSMEHYKGKGQDSLQAFMSIMDDVVGSDKRYQELQAKLKTAKGEEQKRL
                     FNELTNLVEGTAIGEIISDRQALMALLGIKNNVQLGEKVQKDIQNSEGAVETSHAVIR
                     DTNAHKVESLKNTTEFAQMKNFEKVNGVLGTLAELLNKYANEYPNLTQFLSGATDAVK
                     IFGAALAASSVLDLLTGKKDKGGLIGDVLDKSSKASGGKGKVGKLLSVGGSFASVAGV
                     ATMLHGDQAPMSEERKAELRDPNYQARKMYEYKKEILGSRFHSFFRSNETLEQYRKDV
                     SAYEAKQKNSNTMGAVQGVLSTIPSLQELRPKVDSVTQTLSTYQADFQAFGATISAGI
                     EAGLASQSHTIANQITVELDGSVVAEKVAEYQFNFNKRMA"
     gene            1995..3287
                     /locus_tag="PXA71_002134"
     CDS             1995..3287
                     /locus_tag="PXA71_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA circularization protein"
                     /protein_id="HDL5106210.1"
                     /translation="MSGWTMPIQQASFKGVRFDVLAVDDSFERAVVEHAYPFVNGADL
                     EDMGLNTQTIRLQAVFFGSSYYTDYIRLLSVLQQKGADVLVHPIRGRLPNMLLVSANL
                     HTDAENINYVALDLTFKEATEMQPIFAFEDSLISKIDKLLLDLENLFDDGLRFWDSVG
                     VFDLKSRLLGLWGALFASFEAVRNLFDLDKKKYSIASSTSQRTYLRDGSGALNQLKEM
                     VDSGIQGRADLTTLSFKSQLLNITDAIDNTQAIVSKVARDEGFNRSKTVKLLGSDVVE
                     LGIMLDLIATTKLTKVLTELVEEREEELLIGDLELINQIVREHWLNIINKLREQQKNT
                     QKGVPSDKTKVIYETAEKLINNIRNVAHQFTALVLAVINKKPPLTVRMVMDSGTIHKV
                     AHAFYGDYERADELLRLNPHIRQPNFIERGTLLNCYWE"
     gene            3290..4417
                     /locus_tag="PXA71_002135"
     CDS             3290..4417
                     /locus_tag="PXA71_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5106211.1"
                     /translation="MENEIVVEIDGSQHKNWKSYDIDSDFLIPADSFNFELGKSSNIE
                     VLPNYSGKTAIVKINGKTVLTGIVDTTHHTISKSGRGFSLNGRDKAAILVDCSAPITN
                     VQGLSLLDAVKKIVTPLGIKEVQLKAEKNPTLSKVDIDVGESAWEAIMRCANSAGLHC
                     WFDPKGVLIVGGADYAQPPVATLYCVKESGDSRKNNFVDATLSYDVSQSYSEVTFLAQ
                     KHGKDSDNAKHDFKWVYKNEEMELYKPKTIVLGDVENLEALMKQAKKQVSDWQLESFN
                     LTIIVPDHKTKDGTLWQAGQRVHVVCEEYDLDGIFFLMGRRFRLSRTGGTTTELRLKL
                     DGVWTPDAYQAKAQEARKRKGKKGRKKKEPVEYVGSWELGK"
     gene            4419..5081
                     /locus_tag="PXA71_002136"
     CDS             4419..5081
                     /locus_tag="PXA71_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HDL5106212.1"
                     /translation="MMRKLAKQTKEVAKGVQDSVRAAFRGVLNLVKSGSDIQQVQVSA
                     LADETIQDLELMQHFGFTSVPPAGTQAVVIPLGGKTTHGIIVATENGSFRVKNLKNGE
                     TAIYDSSGSTIILKNGRVIDIECDSFNIKCKQYSVTASGGANFNTPKLETDQQFVSQG
                     QISGNGGMVVQGGSGASFTGSLTQQGGSISTDGDVVASGKSLVTHQHNEQGDGRPTSA
                     PI"
     gene            5200..5550
                     /locus_tag="PXA71_002137"
     CDS             5200..5550
                     /locus_tag="PXA71_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage GP46 family protein"
                     /protein_id="HDL5106213.1"
                     /translation="MDREISPLTRDYTSENITTLQNAVYIRLTTPKGSWWADGRVGSL
                     LHLIQREKDLSRVGLLAQQYAEEALQPIIDDGRAKSITVTHEQPKDGSLNLLISVIDN
                     RGVKFEFKHPVKLV"
     gene            5563..6624
                     /locus_tag="PXA71_002138"
     CDS             5563..6624
                     /locus_tag="PXA71_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HDL5106214.1"
                     /translation="MYQIPTLEDVRREILRDIQSLEPTADIEVDSDYFVRASALASCV
                     VGLYAHQNWIVRQYFPDTADSEYLEMHAKLRNLYRKNATYASGSLKVFGTAGSVINEG
                     LQVKFGERFYVTKSSDVIGDDGSATVRVISMATGASSNVKSESKAQLTAAPAGVSSDC
                     LLLPDVTGGTEVESDAALLARLLEQIRRPPSGGNKNDFRQWAESVDGVTSAFVYPLRR
                     GEGTVDIAITSGDTVPSDEIVRATQAYIDEVRPVTAKSVYVLKPVEKRVNFNIKVQLD
                     TDTTLDGVKAEIENALENYFLSLKPADTLIISQIEAVISDLVGVVDREIVQPTRNQTI
                     DAYREMGWFRLGDVTVELM"
BASE COUNT         1955 a         1228 c         1680 g         1778 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctcgcaa
       61 aatgagctac gccgtgcctc agaagcgact aagcaacgag tccgagagtt aaatgctgaa
      121 ttgggtaaaa ccagttttgg ggataaggca ggaagttttg ggcgtgggtt gatgggtgca
      181 ggggttggaa ttgctgcagg tgcagcaatg gctcgccagc ctgcaagaaa tcaaatggaa
      241 tttgatagac agcttgcaat ggtagcgaat accgcctttt cagatcgtga tgtgaaaggg
      301 cgtattgatg ggaaaagaga gttacttgat gccgtacaga aagcagtaag tgtaggcggt
      361 ggctcaaaag aagaagcgtt gagctcacta gacgctttac ttgcctcagg tgctgtttct
      421 accgaaaccg ctctcaattt actcccaacg ttgcagaaag gtgcggtcgc aacaggggca
      481 agtgcaaatg atatggctca aattgctatt tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg gtcgagtctt agatatggca gttgccgctg ggcaagccgg tagctttgag
      601 cttgcagata tggcaagttg gttgcctcaa caaatggccg ctgcaaaaca agctggctta
      661 agcggcattg agggatttga gcgactttta attgcaaacc aacaggctcg tgtcactgcc
      721 ggtacaagta acgaggctgg taataattta gtgaatctgt tgggtaagat tactgctaaa
      781 gaaactaatg agcgttttaa gaatattgaa tataaagatc cgaaaactgg caaaaccaaa
      841 gcgattgatt ttgcaaaatc tatggagcat tacaagggaa aagggcaaga ttcattgcag
      901 gcttttatgt ctattatgga tgacgttgtc gggagtgata aacgctatca agaactacaa
      961 gctaaactta aaactgctaa aggcgaagag cagaaacgct tattcaatga attaacaaac
     1021 ttagttgaag gtacggcaat tggagaaatt atttctgatc gccaagcatt aatggctcta
     1081 ttagggataa agaataatgt tcaattaggt gaaaaagtac agaaagatat tcagaatagt
     1141 gaaggagctg ttgaaacctc tcacgctgtt attcgggata ctaatgctca taaagttgaa
     1201 tcattaaaaa atacaactga atttgcacaa atgaaaaact ttgaaaaagt aaatggagtg
     1261 ttaggcacat tagctgaatt actgaataaa tacgccaatg aataccctaa cttaactcaa
     1321 tttttaagtg gtgcaacaga tgccgttaaa atttttggag cagctcttgc tgcatcaagt
     1381 gtgcttgatt tattaaccgg taaaaaagac aagggcggac taattggtga tgttttggat
     1441 aaatcatcaa aagctagtgg aggtaaaggt aaggtaggta aattgctttc ggttggtggc
     1501 tcttttgcta gtgttgcagg cgttgccaca atgctacacg gcgaccaagc cccgatgagt
     1561 gaggagcgaa aagcagagtt aagagatcct aattatcaag ctcgtaaaat gtacgagtac
     1621 aaaaaagaga ttttaggtag ccgtttccac tcgttttttc gtagtaatga aacccttgag
     1681 caatatcgga aagatgtgag tgcttatgag gctaagcaaa agaatagcaa tactatggga
     1741 gctgtacaag gggttttaag taccattccg agcttacaag agttacgccc taaagttgat
     1801 tcggttactc aaaccctatc cacctatcaa gccgactttc aggcttttgg ggcaacgatt
     1861 tcagccggta ttgaggcagg gcttgcctcg caatctcata cgattgcaaa tcaaatcacc
     1921 gtggagctgg acggttcggt ggtggctgaa aaagtggctg aatatcagtt taattttaac
     1981 aagaggatgg cgtaatgagc ggttggacaa tgcctattca acaggcgagt tttaaaggtg
     2041 tgcgttttga cgtgcttgca gtggatgata gctttgagcg agcggtagtt gaacacgcct
     2101 acccttttgt aaatggggct gatttagagg atatggggct aaacacccaa actattcggc
     2161 tgcaagcggt cttttttggc tcaagctatt acacggacta tatccgctta ctttcagttt
     2221 tgcagcaaaa aggggctgat gtattagtcc accctattcg tgggcgttta ccgaatatgt
     2281 tactcgtttc ggcgaatcta cataccgatg ccgaaaatat caattatgtt gccttagatt
     2341 tgacctttaa agaggcaacc gaaatgcagc cgatttttgc ctttgaagat tcgctgattt
     2401 cgaaaatcga caagctgcta cttgatctcg aaaacctgtt tgatgatggc ttgcgttttt
     2461 gggatagcgt tggggtgttt gatctgaaat ctcgtttgct tgggctttgg ggggcgttgt
     2521 ttgcctcgtt tgaggcggtg cgtaacctgt ttgacttgga caagaaaaaa tacagcattg
     2581 cctcatcaac ctcacaacgc acctatttaa gagacggttc gggggcattg aatcagttaa
     2641 aagaaatggt ggatagcggt attcaggggc gtgctgattt aacgacactc tcgtttaaat
     2701 ctcagttact caatattact gatgcgatag ataacactca ggcgattgtg agcaaagtgg
     2761 ctagagatga gggttttaac cgctcaaaaa cggttaagtt acttggctct gatgtggttg
     2821 agcttggcat tatgcttgac cttattgcca cgactaagct caccaaagtc ttgactgagc
     2881 tggtagaaga gcgtgaggaa gagctgctaa ttggtgattt agagttaatt aaccaaattg
     2941 tgcgtgagca ttggctgaat attatcaaca aactgcgtga gcaacagaag aacactcaaa
     3001 aaggcgtgcc gagtgataag acaaaagtta tctacgagac cgcagaaaag ctgatcaaca
     3061 atatccgtaa tgttgcccat cagtttactg cacttgtgct tgcggtaatt aataaaaaac
     3121 cgcctttgac cgtgcgaatg gtaatggata gcggcacaat ccataaagta gctcacgcct
     3181 tttatgggga ttatgagcga gcggatgagc tattacgtct taatccgcat attcgccagc
     3241 caaactttat tgagcgaggc acgctgttaa attgttattg ggagtaaaaa tggaaaatga
     3301 aattgtggtg gagattgacg gctcgcagca taaaaactgg aaaagttatg atattgacag
     3361 cgatttttta attcctgctg atagttttaa ttttgagttg ggtaaatcta gcaatataga
     3421 ggttttacct aattattcgg gcaaaacggc aatagttaaa atcaatggca aaacggtgct
     3481 cactggcatt gtggatacca cacatcacac cattagcaaa agcgggcgtg ggtttagcct
     3541 aaatggacgt gataaagccg ctattttggt ggattgctct gccccgatta ccaatgtgca
     3601 agggctctct ttgcttgatg ctgttaaaaa aattgtaacc cctcttggga ttaaagaggt
     3661 gcaactgaaa gccgagaaaa acccgacttt aagcaaggtg gatattgatg tgggtgaatc
     3721 ggcgtgggag gcgattatgc ggtgtgccaa ctcggcaggt ttgcattgtt ggtttgaccc
     3781 caaaggcgtg ttaattgtcg gcggtgcgga ttacgctcaa ccgcccgttg ccacgttata
     3841 ttgcgtgaaa gagtcggggg atagccgtaa aaataacttt gttgatgcaa cactttctta
     3901 tgatgtgtcg caaagctatt cggaggtcac ttttcttgct caaaaacacg gcaaagattc
     3961 tgataatgcc aagcacgatt ttaaatgggt gtataaaaat gaggaaatgg agctttataa
     4021 accgaaaact atcgtgctgg gcgatgtgga gaacctcgaa gccttgatga aacaggcgaa
     4081 aaaacaggta tcagattggc agttggagtc atttaacctc acgattattg tacctgacca
     4141 taaaaccaaa gacggcacgt tgtggcaagc tgggcaacgt gtgcacgtgg tatgtgagga
     4201 gtatgattta gatggtattt tctttttaat ggggcgacgt tttcgactct ctcgcacggg
     4261 tggcacaacc accgaattgc ggttaaaact ggatggcgtg tggacacctg atgcttatca
     4321 agctaaagca caagaggctc gcaagcgtaa aggcaaaaaa ggacgtaaga aaaaagagcc
     4381 tgtagaatat gtaggctcgt gggagttggg aaaataatat gatgagaaaa ttagcaaaac
     4441 agactaaaga ggtggcaaaa ggtgtgcaag atagcgtgcg tgctgctttt agaggggtat
     4501 taaatttagt caagagtggc agtgatattc agcaggtaca ggtgtccgct ttagcggacg
     4561 aaactatcca agatttagag ctaatgcagc attttggttt cacttccgtg ccacctgccg
     4621 gcacgcaagc ggttgttatc cccttaggtg gtaaaaccac gcacggtatt attgtggcga
     4681 ctgaaaacgg ctcgtttagg gttaaaaatc taaaaaatgg tgagacggct atttatgatt
     4741 caagcggctc aactatcata ttaaaaaacg ggcgagtgat tgatattgag tgcgatagct
     4801 ttaacattaa atgcaagcaa tattccgtca ccgcaagcgg tggagcaaat tttaacaccc
     4861 cgaaactaga aaccgaccag cagtttgtgt ctcaagggca gatcagcggc aacggtggaa
     4921 tggtagttca aggcggaagt ggtgcaagtt tcactggctc attaacacaa caaggaggca
     4981 gtatctcaac tgatggtgat gtggtggcat cgggtaaatc actggttaca catcaacaca
     5041 acgaacaagg cgatggcaga cctacctctg ctccaattta acttacaagc taatttacaa
     5101 gcggtctaat tttgcaaatt ttttgtagaa aaagaccgct tgccatttgt ggaagtctct
     5161 ccccgttact cctgtcttta atgtctctac catagcaata tggacagaga aatcagcccg
     5221 ctcactcggg actatacaag tgaaaatata actacactgc aaaatgccgt gtatatcaga
     5281 ctaactactc cgaaaggctc gtggtgggca gatgggcgtg taggttctct gctccatctt
     5341 attcaacgtg agaaagattt aagccgtgtg gggctattag ctcaacagta cgccgaagag
     5401 gctttgcagc cgattattga tgacggacga gccaaaagca ttacggtgac acacgagcag
     5461 ccaaaagacg gctcgttaaa tcttttaatc tccgttattg ataatcgtgg ggttaaattt
     5521 gagtttaaac accctgtaaa actggtttag gtggttttta aaatgtatca aatcccaacg
     5581 cttgaagatg ttagaagaga aattctgcga gatattcaat ctttagagcc aactgctgat
     5641 attgaggtgg attcggatta ttttgttcgt gcctccgctt tggcaagctg tgtggtgggg
     5701 ctgtatgctc accaaaactg gattgttcgt cagtatttcc cagatacggc agactccgaa
     5761 tacctcgaaa tgcacgctaa attgcgaaat ctttaccgta aaaatgcgac ctatgcgagt
     5821 ggttcgttga aagtttttgg tactgctggc tcagtaatca atgagggctt gcaagttaaa
     5881 tttggcgagc gtttttatgt aaccaaaagc tcggacgtta ttggtgatga tggctctgca
     5941 acggtgcgag tgatttcaat ggcaacaggg gcatcaagca atgttaaatc tgaaagtaaa
     6001 gcacaactga ctgctgctcc tgctggcgta tcaagcgatt gcttgttatt gcctgatgtg
     6061 acaggcggga cggaagtgga aagcgatgcg gcattgctgg ctcggttatt agagcagatt
     6121 cgccgaccac cgtcaggcgg gaataaaaat gacttccgcc aatgggcaga aagcgttgat
     6181 ggcgtaacct ctgcgtttgt ttatccatta cggcgtggcg agggtacggt agatattgca
     6241 atcacctcag gtgataccgt gccaagtgat gaaatcgtgc gagcaactca agcttatatt
     6301 gatgaagtcc gccctgttac ggctaaatcg gtttatgtac ttaagccagt tgaaaaacgg
     6361 gtcaatttta acatcaaagt gcaacttgat acggatacga cgcttgatgg tgtaaaagcg
     6421 gaaatcgaaa acgctttaga gaattatttt ttatcactca aacctgctga caccttaatt
     6481 atttcgcaaa ttgaggcagt aattagtgat ttagtgggcg tagtagatcg tgagattgta
     6541 cagccaacca gaaaccaaac gattgatgcc taccgtgaaa tgggctggtt cagattgggt
     6601 gatgtaactg tggagttgat gtgatggtaa cgattaactc t
//
LOCUS       DANLRW010000115         6632 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.116, whole genome shotgun sequence.
ACCESSION   DANLRW010000115 DANLRW010000000
VERSION     DANLRW010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6632
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.116"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(73..1764)
                     /gene="dld"
                     /locus_tag="PXA71_002139"
     CDS             complement(73..1764)
                     /gene="dld"
                     /locus_tag="PXA71_002139"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HDL5106215.1"
                     /translation="MSNNSLISQLTEIVGQSYIITDPTKTEAYRSGYRFGTGSAIAVV
                     KPTTLLEYWNVLKACVAADVIVISQAANTGLTGGSTPSGNDYDRDIVIINTMRMNGIQ
                     LINNANQVVCLPGSTLNELELLLKTHGREPHSVIGSSCIGASVIGGICNNSGGALVQR
                     GPAYTEMALFAQLNEDGTLELKNHLGIDLGDTPEEILENLQAQRYQRKDIQQACGKGH
                     DHAYCNHVRQIDEDSPARFNADPARHYEAAGSAGKLAVFAVRLDTFPLEKDTAVFYIG
                     TNHTDTLNDIRRYMLANFEVLPISGEYIHRDAFDIAADYGKDTFWVIKKLGTHRLPQL
                     FSLKAKVDRMAKKLTFLPANLSDKILQAISKMLPQHLPESLRDYRNQYEHHLIIKMGG
                     KGVQEARDYLARYFADTQKGGYLECNPTESQAAMLHRFAVASAAIRYRAIHDKEVEDI
                     VALDIALRRNDKAWFEVLPPEIESQITHKLYYGHFMCHVFHQDYIVKKGVDCLALEHQ
                     MLELLDKRGAQYPAEHNVGHLYEAKPTLRKFYRQLDPTNSFNPGIGQTSKKKYWK"
     gene            complement(1976..3073)
                     /locus_tag="PXA71_002140"
     CDS             complement(1976..3073)
                     /locus_tag="PXA71_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL5106216.1"
                     /translation="MFYSSNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQ
                     AVEQGGVEALLNQNRRVPNIKNRVDESTEKAVVQFALDNPAFGQVRVSNELRKQGIFV
                     SAGGFCLCRWFLSLQVVFVSAGGVRSIWLRHHLANFKQRLTALEKLVAEQGIILSEPQ
                     IQALERKKEDEIACGEIETAHPGYLGSQDTFYVGNIKGVGRIYQQTFIDTYSKVAFAK
                     LYTMKTAITAADMLNDKVLPFFESQRLPMLRVLTDRGSEYCGKVENHDYELYLAINDI
                     EHTKTKVKQPQTNGICERFHKTILQEFYQVAFRKRIYMDLEALQADLDEWLMYYNHHR
                     THQGKMCCGRTPMETLVDGKRIWAEKNLSSN"
     gene            3403..4119
                     /locus_tag="PXA71_002141"
     CDS             3403..4119
                     /locus_tag="PXA71_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3800 domain-containing protein"
                     /protein_id="HDL5106217.1"
                     /translation="MYLMYVDESGSTTDPTQKYFVLSGIAVFERNTHWIEKKMNVIAS
                     QFCQYSEGSDPYFYELHGSPMRSGKSEWRGIPMSERINAIQDCLKLVQSNNIRIFAAV
                     IEQGYSSGQDTITECFEQISSRFDMYLSRLHAQGNTQRGISIFDKSSTEKSIQALART
                     FKNSGHTYGKLRNFSEVPLFLDSKSSRLIQLADLVSYAIFRHYEHNDSSFYDIIRNNF
                     DYHNGRIHGLYLRNKEDIIS"
     gene            complement(4162..5080)
                     /locus_tag="PXA71_002142"
                     /pseudo
     CDS             complement(4162..5080)
                     /locus_tag="PXA71_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700778.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
     gene            complement(5082..>6632)
                     /locus_tag="PXA71_002143"
     CDS             complement(5082..>6632)
                     /locus_tag="PXA71_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase/relaxase domain-containing protein"
                     /protein_id="HDL5106218.1"
                     /translation="VHDIGKVVVDIEITLKDGSRWFAWNGLPPQPYKFKYIKGRDYHL
                     HPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVT
                     LALGGDVNKLVQRPVNSLSKQLVLALRYLLEQKIKLNTPKGPADGWFTEEGLWLVSKT
                     AADNIRAYLLGQGISVPKDNPKLFDEMQSLGIVEESPAGGAIWSCRIQADSGWTPANT
                     FTLLRIKPEVAWENINDRPNYFAGKVKIVEQITEESNIETQSTLVDGTTKPAPLPSVQ
                     TGGIIASKEVEISQVETNSDNAPSSEIIINDENDLTSFVLDMFAPTESSEPSLDDISI
                     GKGQEIASMPSKQEVQDKSTTKKLKVTQSAVETPETLTLSELQLQNKENSITGDNFVK
                     WLKSGIATNKFAINKPTAKLHIVEDHLFLVTPVIFEMYLQETGQPYDKETINNLQYDF
                     QGLGIHSPKNTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTRLFFGDKVLLNNHC
                     LTLQKEET"
BASE COUNT         1910 a         1346 c         1246 g         2130 t
ORIGIN      
        1 ttagcaactg ttttgtccac ttggcatagt ttttgacgga tcagcaacta ttttgtctac
       61 tatgcctttt tgttacttcc agtatttttt cttcgaggtt tgcccgatcc ccggattaaa
      121 gctgttggtt ggatcaagct gccggtagaa tttgcgtaag gtcggttttg cttcgtaaag
      181 atgaccgaca ttatgctccg cagggtattg tgccccacgt ttatccagta attctaacat
      241 ctgatgttcc aacgccaaac aatctacacc ttttttcaca atatagtctt gatggaaaac
      301 atggcacata aaatgcccat aataaagttt gtgcgtgatt tgactctcta tttccggcgg
      361 tagcacttca aaccacgctt tatcatttcg gcgaagggca atatctaaag caacaatatc
      421 ttccacctct ttatcgtgaa tggctcgata gcgaatcgct gccgaagcaa cggcaaaacg
      481 atgtaacatt gccgcttggc tttcagtcgg attacactcc aaataaccgc ctttttgtgt
      541 atcagcaaaa taacgggcaa gatagtctct tgcttcttga acgccttttc cacccatttt
      601 gataattaag tgatgttcat actggttacg gtagtctcga agactttccg gcaaatgttg
      661 cggtaacatt tttgagattg cctgtaatat tttatcactg agatttgccg gtaaaaaggt
      721 gagtttcttc gccattctgt ccacttttgc tttaagtgaa aagagttgtg gtaagcggtg
      781 tgtaccgagt tttttaatca cccaaaaagt atctttaccg taatcagcgg caatatcaaa
      841 ggcatcacga tgaatatatt caccggaaat cggcaatacc tcaaagttgg ctaacatata
      901 gcgacgaata tcgtttaatg tgtccgtatg atttgtcccg atataaaaaa cagccgtgtc
      961 tttttcaagc ggaaaggtat ctaatcgcac cgcaaacacc gctaactttc ctgcactacc
     1021 ggcagcctcg tagtggcggg caggatcggc attaaaacgg gcaggggagt cttcatcaat
     1081 ttggcggacg tgattacaat aggcgtgatc gtgtcctttt ccgcacgctt gctgaatatc
     1141 cttacgctga taacgttggg cttgcagatt ttctaaaatt tcttccggcg tatcacctaa
     1201 atcaatacct aaatggtttt ttaattccag cgtgccgtct tcatttaact gggcaaacag
     1261 tgccatttca gtataagccg gcccacgttg cactaatgca ccccctgaat tattacaaat
     1321 accaccgata accgaagccc cgatacagga cgatccgatc accgaatgcg gttcacgtcc
     1381 gtgcgttttc agcaacaatt ccagctcatt taatgtcgag cccggtaagc aaacgacttg
     1441 attggcattg ttaattaact gaatgccgtt cattcgcatt gtgttaatga tcacaatatc
     1501 ccgatcataa tcgttgccgc ttggtgttga accaccggtt aatccggtat tggccgcttg
     1561 tgagataaca atgacatcgg cggcgacaca ggcttttaat acgttccagt attctaataa
     1621 cgttgtaggt tttaccactg caatcgcact acccgtgcca aagcgatacc cgctacgata
     1681 ggcttccgtc ttagtcgggt cagtgatgat ataagactgc ccgacaattt cagtaagctg
     1741 agaaatcagt gaattatttg acattatgct tccctcaaag gtagaaatag atagggcagt
     1801 atagcaataa acaaaagaga gcaaagcaga atgttacaaa attgtgaact actgcacaga
     1861 ataaatgaag aaatgaagta aaagaaagcg agctaaaaga gcgtcgcccg ctttatttgt
     1921 agaaaatcaa acctaatctg acagtccccc gtttaaaatt accgtgtctg tcagattaat
     1981 ttgagcttaa attcttttct gcccaaatgc gttttccatc aactaatgtc tccatcggtg
     2041 ttcttccaca gcacattttt ccttgatggg ttcgatgatg gttataatac attaaccatt
     2101 catctaagtc agcttgcaat gcctctaaat ccatataaat ccgttttctg aatgccactt
     2161 ggtagaactc ctgcaaaatc gttttgtgaa aacgctcaca gatgccgttt gtttgtggct
     2221 gtttcacttt ggtttttgtg tgctctatgt cattgatagc caaataaagc tcataatcgt
     2281 gattctcaac tttcccacaa tactcactgc ctcggtctgt cagcactcgt aacataggta
     2341 acctctggct ttcaaagaat ggtaatactt tgtcatttag catatcagca gcagtgatag
     2401 ccgtcttcat tgtatacagt tttgcaaatg ccactttact ataagtatca ataaacgttt
     2461 gctgataaat acgacccaca cctttaatat tgccgacata aaaggtatct tgtgacccta
     2521 aatagccggg gtgtgccgtt tcaatttcac cacaggcaat ctcatcttct ttcttccgct
     2581 ccaaggcttg tatctgtggc tcactcagaa taatgccttg ctctgccacc aatttttcga
     2641 gggcagttaa gcgttgctta aaattagcta agtgatgtct caaccaaatg gaacgtacac
     2701 cacctgcaga gacaaaaacc acctgcagag acaaaaacca cctgcagaga caaaaaccac
     2761 ctgcagagac aaaaatcccc tgtttacgca gttcattact cactcgaact tgaccaaaag
     2821 caggattatc taaagcgaat tgtacaaccg ctttttctgt ggattcatcc acacgatttt
     2881 taatgttggg aacacgtcga ttttgattta gtaatgcctc aacaccgcct tgttcgacag
     2941 cctgttgata gcgataaaaa gtatctcgac tcatccccat taccttacag gcttgtgaga
     3001 tattacccag ttcttctgct aaatttaata aaccggtctt gtgtttaata agtggattgc
     3061 tagaataaaa catgagagtt tcctttttgt ttagattgat ttttgacact catattctaa
     3121 acgggaaact ctcacttttt agagtgaatt gtcagatcaa gtctgatctt ctacagacga
     3181 tccaggtctt acacattctt tcaagtttgt aaagcctgaa aattattttt tatacttgat
     3241 ttttgtcaaa aagtctctac actatatggc agggtcagtt ttcgctgttt aacggtgttt
     3301 aatgagattt tcattactgg ctctccttaa tagaaattta tggaagagct atctgataga
     3361 gtaatctagc gatagctctt tttcattgaa caaagaggct atatgtatct tatgtatgtt
     3421 gatgagtctg gttctacgac agatcctact caaaaatatt ttgtattatc aggtatcgct
     3481 gtatttgaac gaaatactca ttggattgag aaaaaaatga atgtgatagc ctctcaattc
     3541 tgtcaatatt ctgaagggag tgatccatat ttctatgagt tacatggttc accaatgaga
     3601 tctggaaaga gtgaatggag aggcattcca atgagtgagc gtattaatgc cattcaagat
     3661 tgcttgaaat tagttcaaag taataatatt cgtatatttg cagcagttat agagcaaggg
     3721 tattctagtg gtcaggatac tattacagaa tgttttgagc aaatatcatc tcgatttgat
     3781 atgtatctga gccgtttaca tgcccaaggt aatacccaaa gaggcatttc tatctttgat
     3841 aaatcatcga ctgagaagtc aatccaagca cttgcaagaa cattcaaaaa tagtgggcat
     3901 acttatggga aacttagaaa tttctcagaa gttccattat ttcttgactc aaagtcatcg
     3961 agattaattc agctagcgga tctagtttcc tatgcgatat ttagacacta tgaacacaat
     4021 gatagctcat tttacgatat tataagaaat aactttgatt atcataacgg gcgtattcat
     4081 ggtttatatt tacggaacaa agaagatatt atttcataaa aattcgcccc aaaagggaga
     4141 agtatctccc ttttgtattt tttataacaa attaaccgtt tctctcaaca tttccacatc
     4201 gtgttcaata tatcctagtg tcacactgat atctttatgc cctaacagtt tctgaaccac
     4261 ataaacattt tcgggcttct tcattaattg agtagcaact gtatgtcgaa atctgtgtgg
     4321 tgatgaagta aaaccgacca agtcagaaat atgccgaaat atatgtgtaa gctgattttg
     4381 gctcatcggc tgtcctcttc ttcgagagca tcgagaaaat aaattgagat tgaacaattg
     4441 gcaattatct gtttgttttc ttatttttaa ttcagtaata agcctttcta tatgaatata
     4501 aagtgaatct gaaatcggta cgatatggta atcatgattt ttattgattt ccggcgaaat
     4561 ataaatcgtc ctattagaaa gatctacatc actaattttc agtttcacta attgtcctcg
     4621 ccgaatcccc gtacatctca atgtcataat aattgcaagg acaaaccagc ttggttttag
     4681 aaagtcaggt aatacaacgt tattattgag tatgtggtct attttatgta attgttcggt
     4741 tgaataagtt ttctttctcc ttttcgattc tcgaataaat aactgattaa atggatttcg
     4801 atttatatta agtaatcctt gcgatatacc aaagttatat aaggctttta aatgtctgac
     4861 ataattattc cacgttactg ctttgatttt atcgccaaca atttgattac gccattcaat
     4921 gagcatatcg gtggtaatgt cattggcatt taactttgga taacgctttt tgataattcg
     4981 gattacgttg ttgtagctcc gtttggtatc cggacgaaga tagtgacgat agaaaaaaaa
     5041 atcggtctag tagcgaatca aaagagatag aagttatcat tttaagtttc ctctttctgt
     5101 aaagttaaac agtgattatt taatagtacc ttatccccaa aaaagagacg ggtatttttt
     5161 atcaaatatc ctgttaaaga ggaagtcttt ctcggtccaa tgacatcaca tttccaaaaa
     5221 ttgatggtat ccggcttacc gttggtcatt gtgtttttag gtgaatgaat ccctaatcct
     5281 tgaaaatcat actggagatt attaattgtt tccttatcat aaggctgtcc agtctcttgc
     5341 aaatacattt caaaaataac gggggtaact aaaaacaggt ggtcttcaac aatatggagc
     5401 ttggcagtag gcttgttaat tgcaaatttg ttggtcgcaa tacctgattt gagccacttt
     5461 acaaagttat ctcctgtaat tgagttctcc ttattctgta actgtagctc tgatagtgtt
     5521 aatgtttcgg gcgtttctac tgcactttgt gttactttga gctttttagt ggtagattta
     5581 tcctgtactt cttgtttgga tggcatactt gcaatttcct gtcccttacc aattgaaata
     5641 tcatcaaggc ttggttcgga actttccgta ggtgcaaaca tatccagcac aaaggaggtt
     5701 aaatcatttt catcatttat gatgatttct gaggatggtg cattatccga gtttgtctct
     5761 acctgagata tttcaacttc tttagaggca ataatgcccc ctgtctgaac actcggtaat
     5821 ggagctggtt tagtggtccc atcgactaat gtagactgag tctctatatt actttcttct
     5881 gttatctgct cgactatttt aacttttccg gcaaaataat ttggtcgatc attaatattc
     5941 tcccaagcca cttctggttt aattctcaat aatgtaaagg tatttgctgg cgtccaacct
     6001 gaatcagctt gaatacggca actccaaatt gctccaccag ccggtgattc ttctacaata
     6061 ccgagagact gcatttcatc aaataacttt ggattatcct taggcactga aattccctgc
     6121 cccagtaagt aagctcggat attatcagca gcagttttgc taacaagcca caatccttcc
     6181 tcagtgaacc aaccgtctgc cggacctttg ggtgtattta actttatttt ctgttccagc
     6241 aaataacgta gtgccaagac cagttgcttt gacagagaat tgacaggacg ttgaaccagt
     6301 ttatttacat cgccaccgag tgcgagggta acactatgct gatcggcttt ctgcacgatc
     6361 tcagataaaa gcccggcttt atcgttatgc ccagacattg catacatcag tgaagaaatg
     6421 acttctggat actgtcccag ccaatcaaac gcagattttg gaataagttg atttgcaagg
     6481 aagcctccta gcaccggatg aagatggtag tctcgacctt tgatgtattt gaatttataa
     6541 ggttgaggtg gtaacccatt ccaagcaaac caacgtgaac cgtctttgag tgtaatttca
     6601 atatcaacga caactttgcc aatatcgtga ac
//
LOCUS       DANLRW010000116         6528 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.117, whole genome shotgun sequence.
ACCESSION   DANLRW010000116 DANLRW010000000
VERSION     DANLRW010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6528
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.117"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            138..2795
                     /gene="aceE"
                     /locus_tag="PXA71_002144"
     CDS             138..2795
                     /gene="aceE"
                     /locus_tag="PXA71_002144"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005628834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HDL5106219.1"
                     /translation="MSENLRNDVDPIETQDWLASLDSLIREEGLERAQFIIEQVISQA
                     RAGGVALPTGVTTDYVNTIPVSEQPAYPGDHKIERRIRSAVRWNAIAAVLRSQKKDLD
                     LGGHISTFQSAATMYEVCFNHFFKAPTEKDGGDLVFFQGHAAPGMYGRAFLEGRITAE
                     QMDNFRQEAFTDGLSSYPHPKLMPEFWQFSTVSMGLGPVNAIYQARFLKYLENRGLKD
                     TSAQKVYAFLGDGEMDEIESKGALSFAGREKLNNLIFTISCNLQRLDGPVNGNGKIVQ
                     ELEALFTGCGWEVIKVLWGSGWDKLLEKDTSGKLKQLMMEVLDGDYLTFKSKNGAYVR
                     EHFFGRYPETAALVADMTDDEIWALRRGAHDSEKLYAAYAKAQKSDKPVVILAHQVKG
                     YRIPEAESKNTAHQSKKMSLDSLKGFRDYFELPLTDEQVESLEYVRFPEGSEEYNYLH
                     GQRKALNGYVPVRKPKFTVDFKVPELSEFQALLDEQPRGISTTMAFSRVLNTLLKDKN
                     IGQQIVPIIADEARTFGMEGLFRQIGIYNPHGQNYVPSDRDLVAYYREAKDGQVLQEG
                     INELGATASWVAAATSYSVSNLPMIPFFIYYSMFGFQRVGDMMWLAGDQLARGFMIGG
                     TSGRTTLNGEGLQHEDGHSHIQAGVIPNCVTYDPAFAFEVAVIVQDGIRRMYGENQED
                     IFYYITTLNEITEQPAMPAGAEEGIRKGLYKFETVEGKGKGHVQLLSSGAIMRHVRAA
                     AQILANDYGITADVFSAPSFNELGRDGADVARWNLLHPTETPRVPYVAQVLQDLPTVA
                     STDYMKMYAEQIRAYVPSKHYHVLGTDGFGRSDSRANLREHFEVDERYVVVAALAQLA
                     KEGTVENKVVAEAITKFGLNVDRINPLYA"
     gene            2999..4909
                     /gene="aceF"
                     /locus_tag="PXA71_002145"
     CDS             2999..4909
                     /gene="aceF"
                     /locus_tag="PXA71_002145"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005618949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HDL5106220.1"
                     /translation="MSKQINVPDIGSDEVSVTEVMVKVGDTISVDQSIINVEGDKASM
                     EVPAPEAGVVKEVLVKVGDKVSTGSPMLILESADAAPAQEAPKAEAAPAAPVATTSAV
                     VEVNVPDIGGDEVNVTEIMVKVGDSVEVDQSIINVEGDKASMEVPAPVAGVVKEILIN
                     VGDKVSTGKLIMKFETASAATAQSTPVAEAAPAQASASAIKDVNVPDIGGDEVNVTEI
                     MVKVGDSVSEEQSLITVEGDKASMEVPAPFAGVVKEILVKSGDKVSTGSLIMKFEVAG
                     AAPAPAAAQAASAPAPAPQAAAPAKADAAPAGQNQSGLSQEQVVASAGYAHATPVIRR
                     LAREFGVNLDKVKGTGRKGRIVKEDIQAYVKTAVQVFEKQGGTAAAATGAANGAGLGL
                     LPWPKVDFSKFGEVEEVELSRINKISGANLHRNWVMIPHVTHFDRTDITELENFRKEQ
                     NKEAEKRKLDVKITPVVFIMKAVASALEAFPRFNSSISEDAQRLTLKKYINIGVAVDT
                     PNGLVVPVFKNVNKKGIIELSRELMEVSKKAREGKLTASDMQGGCFTISSLGGIGTTH
                     FTPIVNAPEVAILGVSKSEMQPIWNGKEFEPRLMLPLSLSFDHRVIDGADGARFLSYI
                     NSVLADIRRLVM"
     gene            5109..>6528
                     /gene="lpdA"
                     /locus_tag="PXA71_002146"
     CDS             5109..>6528
                     /gene="lpdA"
                     /locus_tag="PXA71_002146"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011272714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDL5106221.1"
                     /translation="MSKEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYSTLGGI
                     CLNVGCIPSKALLHVAKVIEEAKNAVHNGVTFGEPTIDLDQVRAGKEAVVSKLTGGLA
                     GMAKARKVTVVEGLAAFTGPNTLVARDRDGNPTTITFDNAIIAAGSRPIQLPFIPHED
                     PRVWDSTDALKLKEVPKKLLIMGGGIIGLEMGTVYNALGSEVEVVEMFDQVIPAADKD
                     VVAIYTKQIEKKFKLMLETKVTAVEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPN
                     GKLIDAGKAGVEVDERGFIRVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGMKHYFDPKVIPSIAYTEPEVAWVGKTEKECKQEGLNYEVAKFPWAASGRAIASEC
                     SEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNAKAKK"
BASE COUNT         1993 a         1232 c         1515 g         1788 t
ORIGIN      
        1 agagaggttt aattcggaaa ttgttgtttt actgaaattt tttcgataag aattggtcta
       61 aaaatcacca aacaaacaaa atttgttaaa attttgttat ttatcacctc aatcgttaat
      121 ttataaggaa gaatactatg tcagagaact taagaaatga cgtagatcca atcgaaactc
      181 aggattggtt agcatcactc gattcattaa ttcgtgaaga aggtttagag cgcgctcaat
      241 ttatcattga acaagttatt agccaagctc gtgcaggtgg cgtggcatta ccaacaggcg
      301 taacaacaga ttatgtcaat actatccctg tttccgagca gccagcttat ccgggtgatc
      361 ataaaatcga acgtcgtatt cgttctgcgg tacgttggaa tgcgattgcg gcagtacttc
      421 gtagccagaa gaaagatctt gacttaggtg gtcatatttc aactttccaa tctgcggcaa
      481 ctatgtatga agtgtgtttt aaccactttt tcaaagcacc aaccgaaaaa gatggtggtg
      541 atttagtgtt cttccaaggc cacgcagcac cgggtatgta tggtcgtgcg ttcttagaag
      601 gtcgtattac cgcagaacaa atggataact tccgtcaaga agcatttaca gacggtttat
      661 cttcttaccc acaccctaaa ttaatgcctg aattttggca attctctacc gtatctatgg
      721 gtttaggacc ggtaaatgct atttaccaag ctcgtttctt aaaatattta gaaaaccgtg
      781 gtctaaaaga tacttcggct caaaaagtat atgcattctt aggcgatggc gaaatggatg
      841 aaatcgaatc taaaggtgca ttatcattcg ccggtcgtga aaaattaaat aacttaatct
      901 tcactattag ctgtaactta caacgtttag acggtccggt taacggtaac ggcaaaatcg
      961 tgcaagaatt agaagcactc tttaccggtt gtggctggga agtgattaaa gtgttatggg
     1021 gtagtggttg ggataaactg cttgaaaaag atacttcagg caaacttaaa cagttaatga
     1081 tggaagtgct tgatggtgac tatttaacct tcaaatccaa aaatggtgct tacgttcgtg
     1141 aacacttctt cggtcgttac cctgaaactg cagcattagt tgctgatatg acagacgatg
     1201 aaatttgggc attacgccgt ggtgcacacg attctgaaaa actttatgca gcctatgcaa
     1261 aagcacaaaa atcggacaaa ccagttgtaa ttttagctca ccaagtgaaa ggctaccgta
     1321 ttcctgaagc ggaaagtaaa aatactgctc accaatcgaa aaaaatgtca ttagacagct
     1381 taaaaggctt ccgtgactac ttcgagctac cattaaccga tgagcaagta gaaagcctag
     1441 agtatgtaag attccctgaa ggttctgaag agtacaacta cttacacgga caacgtaaag
     1501 ccttaaacgg ttatgtgcct gtacgtaaac cgaaatttac ggttgatttc aaagtgcctg
     1561 aattaagcga attccaagca ttattggatg agcaaccacg tggtatttca accacaatgg
     1621 cgttctctcg tgtattgaat actttattga aagataaaaa tatcggtcag caaatcgtac
     1681 ctattattgc ggacgaagcc cgtactttcg gtatggaagg tttattccgt caaatcggta
     1741 tttataaccc acatggtcaa aactatgtac cgtcagaccg tgatttagta gcttactacc
     1801 gtgaagcaaa agatggccaa gtgttacaag aaggtatcaa tgagttaggt gcaacagcct
     1861 cttgggtggc agcagcgact tcttattctg ttagcaactt accgatgatc ccattcttca
     1921 tctactactc aatgtttggt ttccaacgtg taggcgatat gatgtggtta gccggtgacc
     1981 aattagctcg tggctttatg attggtggta cttcaggtcg tacaacatta aacggtgaag
     2041 gtttacaaca cgaagatggt catagccata ttcaagcagg tgtaatcccg aactgcgtca
     2101 cttatgaccc tgcatttgcc tttgaggttg cggttattgt tcaagacggt attcgtcgta
     2161 tgtatggtga aaaccaagaa gatatcttct actacattac taccttaaat gaaattaccg
     2221 aacagccggc aatgccggca ggtgcggaag aaggtatccg taaaggttta tataaatttg
     2281 aaaccgttga gggtaaaggt aaaggtcacg tacaattatt aagctcaggt gcaattatgc
     2341 gtcacgtgcg tgcagctgca caaattctcg cgaatgacta cggcattaca gcagatgtat
     2401 tctcagcacc atcattcaat gaattaggtc gtgatggagc agatgtggct cgttggaact
     2461 tattacaccc aactgaaaca ccacgtgtac cgtacgttgc tcaagtgtta caagatttac
     2521 cgactgttgc ttcaaccgac tatatgaaaa tgtacgcaga gcaaatccgt gcttatgtac
     2581 caagtaaaca ctatcacgtg ttaggtacag acggtttcgg tcgttcagac agccgtgcaa
     2641 acttacgtga acacttcgaa gttgatgagc gttatgtagt agttgcagcc ctcgctcaat
     2701 tagcgaaaga aggtacagtt gaaaacaaag tggttgcgga agctattact aaattcggct
     2761 taaatgtaga tcgtattaac ccattatatg cgtaatttct aatactctct cccttgatgg
     2821 gagagagaca gctaaaggtt tcgtttagaa acttttagca gagagggtat tagttttatt
     2881 tgcaaaaatg ttgagaaaat caaccgcttg cattcccttc tccctgattt ttcttcttac
     2941 aaagaaaaat ctgtccctcc cacaatggga gagggggtaa ctcaagaagg atttcaaaat
     3001 gtcaaaacaa attaatgtgc cggacatcgg ttcggatgaa gtcagtgtga ctgaagtgat
     3061 ggtaaaagtt ggtgatacta tttcagtaga tcaatcaatt attaacgtag aaggcgataa
     3121 agcctctatg gaagtgccgg ctcctgaagc aggtgtggta aaagaagttt tagtgaaagt
     3181 gggtgataaa gtttcaaccg gttcaccaat gttaatttta gagtcagcag atgctgctcc
     3241 tgctcaagaa gcaccaaaag cagaagcagc tcctgctgct ccagtagcaa caacttcagc
     3301 cgttgttgaa gtaaatgtac ctgatatcgg tggcgatgaa gttaacgtaa ccgaaattat
     3361 ggttaaagta ggtgatagcg ttgaagtgga tcaatctatc atcaacgttg aaggtgataa
     3421 agcctcaatg gaagtgcctg caccggttgc cggcgtagta aaagaaatct taatcaatgt
     3481 gggtgacaaa gtttcaactg gtaaattgat tatgaaattt gaaacggctt ccgcagctac
     3541 agcacaatct acaccggttg cggaagctgc tccagctcaa gcttcggcat cagcgattaa
     3601 agatgtaaat gtaccggaca tcggtggtga tgaagtaaac gtaactgaaa ttatggttaa
     3661 agtgggtgat tctgtttcag aagaacaatc tttaatcacg gttgaaggtg ataaagcttc
     3721 aatggaagtt ccggctccat ttgccggtgt ggtgaaagaa attttagtga aatcaggtga
     3781 taaagtttca accggttcat taattatgaa atttgaagta gcgggtgcgg caccggctcc
     3841 ggcggctgct caagcggctt cagctcctgc tcctgctcca caagcagcag ctccggcgaa
     3901 agctgacgca gctccggcag gtcaaaacca atcaggttta agccaagaac aagtggtggc
     3961 ttcagctggc tatgcacacg caacaccggt aattcgccgt ttagctcgtg agtttggtgt
     4021 aaacctagac aaagtaaaag gtacaggtcg taaaggccgt atcgttaaag aagatattca
     4081 agcatacgtt aaaacggctg ttcaagtatt tgaaaaacaa ggcggaacag cagcggcagc
     4141 aacaggtgcg gcaaacggtg caggcttagg tttattaccg tggccgaaag tagatttcag
     4201 caagtttggt gaagttgaag aagttgaatt aagccgtatc aataagattt ccggtgcgaa
     4261 cttacaccgt aactgggtaa tgattcctca cgttacacat ttcgatcgca cagacattac
     4321 cgagttagaa aacttccgta aagagcaaaa taaagaagcg gaaaaacgta aattagacgt
     4381 gaaaattacc cctgtggtct tcattatgaa agcagtggca agtgcattag aagccttccc
     4441 tcgtttcaac agctcaattt ctgaagatgc acaacgttta accttgaaaa aatacatcaa
     4501 tatcggggtt gcggttgata cgccaaacgg tttagtggtg ccggtgttca aaaatgtgaa
     4561 caaaaaaggc attatcgaac tttctcgcga attaatggaa gtctcgaaaa aagcccgtga
     4621 aggtaaattg acagcatctg atatgcaagg tggctgtttc acaatttcaa gtttaggcgg
     4681 tattggtaca acgcacttta cgccaatcgt gaatgcaccg gaagtggcta ttttaggtgt
     4741 gtctaaatct gaaatgcaac cgatttggaa tggcaaagag tttgaaccac gcttaatgct
     4801 tccgctttca ttatcattcg accaccgtgt gatcgatggt gctgatggtg cgagattctt
     4861 aagctatatt aatagcgtgt tggcagatat tcgtcgttta gtgatgtaat tcggtaaagc
     4921 tcctcctaaa aaagtccctc tttagaaaag aggggtaggg ggagatttga tagacgtaat
     4981 ttacgaagag aataaattat ttggtagaaa tttgtgtttg attgattgct ctctcacttc
     5041 gctttatatt ctgccaaatc tcccttaccc ctctttgcta aaggggggga ataaaaagag
     5101 gaaaaactat gagcaaagaa attaaaaccc aagttgtcgt acttggtgca ggtccagcag
     5161 gttactcagc ggcattccgt tgtgccgact taggcttaga aacagtaatt gttgagcgtt
     5221 attcaacctt aggtggtatt tgcttaaacg taggttgtat cccttctaaa gcattattac
     5281 acgttgcaaa agtaattgaa gaagctaaaa atgcagtaca caacggtgtg acctttggtg
     5341 agccaacgat tgatttagat caggtacgtg ctggtaaaga agccgttgtt tcaaaattaa
     5401 ccggtggctt agcaggaatg gctaaggctc gtaaagtgac agtagtagaa ggcttggctg
     5461 catttactgg tccgaatacg ttagtcgctc gtgatcgtga cggcaatcct acaactatca
     5521 cgttcgataa tgcgattatc gcagcaggtt ctcgtccgat tcaactacca tttattccac
     5581 acgaagaccc acgagtttgg gattcaaccg atgctcttaa attaaaagaa gtaccgaaaa
     5641 aactccttat tatgggtggt ggtattatcg gtttagaaat gggaacggta tataacgcgc
     5701 ttggttcaga agtggaagtg gttgaaatgt tcgaccaagt aattcctgct gcagataaag
     5761 atgttgtagc gatttacacc aaacaaatcg agaaaaaatt caagctaatg cttgaaacca
     5821 aagtaaccgc agtagaagct aaagatgacg gtatctatgt atcaatggaa ggtaaggctt
     5881 gcaacgatac taaacgttat gatgcggtat tagtcgctat cggacgtgtg ccaaacggta
     5941 aattaattga tgccggtaaa gctggagtgg aagtagatga gcgtggcttt attcgtgtag
     6001 ataaacaaat gcgtaccaat gtgccacaca tctttgctat tggtgatatt gtcggccagc
     6061 cgatgttagc tcacaaaggt gtacacgagg gacacgtggc agcagaagtg attgcaggaa
     6121 tgaaacatta cttcgatccg aaagtcattc cgtccatcgc ttatactgaa ccagaagtgg
     6181 cttgggttgg taaaactgag aaagagtgta aacaagaagg cttgaactac gaagtggcga
     6241 aattcccttg ggctgcttca ggtcgtgcga ttgcttctga atgctcagaa ggtatgacca
     6301 agttaatttt tgataaagat actcaccgtg tattaggtgg tgcgattgtt ggtagcaatg
     6361 gtggcgaatt attaggcgaa atcggtcttg caatcgaaat gggctgtgat gctgaagata
     6421 tcgcattaac cattcatgct cacccaacgt tacacgaatc ggtaggatta gcggcagaag
     6481 tatttgaagg ttcaattaca gacttaccaa atgcgaaagc caaaaagc
//
LOCUS       DANLRW010000117         6508 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.118, whole genome shotgun sequence.
ACCESSION   DANLRW010000117 DANLRW010000000
VERSION     DANLRW010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6508
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.118"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..707)
                     /locus_tag="PXA71_002147"
     CDS             complement(<1..707)
                     /locus_tag="PXA71_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005712160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5106222.1"
                     /translation="MSIYRRKANGPWWVDITTPNGKRIKRSTRTLVKREAQQYHDKLK
                     QEMWAEDKLEEKRKYIFEDALLHYVRAAEELKDKATKKRHAEYWLSKFAGRELSSLTA
                     QEIILNIPKKNANTKKPLSHSTQNKYVKSLSRVLNIAHKLGMLDAVPHIPKKKEPPIR
                     VRWITKEQAKQLIDKLSSDWMKSICKFALMTGARRTEILTMTWDKIDLVRKVAIVTND
                     VAKSGKARSLLLNQEAI"
     gene            complement(611..934)
                     /locus_tag="PXA71_002148"
     CDS             complement(611..934)
                     /locus_tag="PXA71_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005822951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5106223.1"
                     /translation="MEHLTINQVAKELNCHPNTVRQHLADWGFFKMVGSEVWRINRED
                     LERAKKRAGIDPIRKRSDNDRGLSLSVEENEKCRSTDEKQTVRGGLISQPQTARELRE
                     ALARL"
     gene            complement(1015..1182)
                     /locus_tag="PXA71_002149"
     CDS             complement(1015..1182)
                     /locus_tag="PXA71_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDL5106224.1"
                     /translation="MQFTYGSICSGIEATSIAWHGLGKPLWFSEIEPFPCAVLAHRFP
                     NVPNGNGMAVP"
     gene            complement(1190..1564)
                     /locus_tag="PXA71_002150"
     CDS             complement(1190..1564)
                     /locus_tag="PXA71_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106225.1"
                     /translation="MHIEDKIAWWLANGETGVSSKTMAFYLGYGIRPKIEGYPHDVSD
                     FRRCFLLLETVPFLRNRIEKMAELGKVWAALAKEWHTLEALYNEEECQIRCPKTYAKL
                     REILEANEENVVRIGNLSISIG"
     gene            1714..1941
                     /locus_tag="PXA71_002151"
                     /pseudo
     CDS             1714..1941
                     /locus_tag="PXA71_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005609911.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit family protein"
     gene            1966..2361
                     /locus_tag="PXA71_002152"
     CDS             1966..2361
                     /locus_tag="PXA71_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5106226.1"
                     /translation="MKIHTQIRKEILSLLEAKLTDIEHFYNGQPNFIDIDEQQLAISV
                     YLDEINRQELTLCDEQWTAQLNITIYLKSVDEAEDELDEWAEKIREVVETYSAFEHLE
                     GISLSQYQYEQDQNQRTWHSATLIFDVEY"
     gene            2393..3034
                     /locus_tag="PXA71_002153"
     CDS             2393..3034
                     /locus_tag="PXA71_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106227.1"
                     /translation="MAKTTKVQGTKFRIGIGREAQKAITAITLATATLTIATSGYKKG
                     DAIEITGCGQLDGIYPVLSVTGDQVKLCEEVNWTGKDLPANYTKAKAALVQYSDQFCA
                     VKNIEKSDDTLSTEDVTTVCSEGTETEPGEIEFGSIKLSFFHKPSTEMQTRLRKLFYD
                     KSTFAYKLELPDNHGTTYGEGFIEAGNGFSGEVKGKYEGSVSIKPSKRDYLLV"
     gene            3117..3518
                     /locus_tag="PXA71_002154"
     CDS             3117..3518
                     /locus_tag="PXA71_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106228.1"
                     /translation="MTLREKLLANKPKLQSIEINGETYYLREATVGDMNKQIFETRSW
                     LIQQAEQENVELPAEDDETFDEALNRFGEKYRLAQSVAYRLCDENGALLFNPLNIDDL
                     NAIAELDSKVIIDFNQAVSAPKDSASEESSK"
     gene            3563..3793
                     /locus_tag="PXA71_002155"
     CDS             3563..3793
                     /locus_tag="PXA71_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HDL5106229.1"
                     /translation="MPERHFAEYQLFYQEQPFGLWREDYRAAQLAHLTAMINRDPKGK
                     APELSEFMPFFNRADEVEANEDDGVADYLAKR"
     gene            3861..4127
                     /locus_tag="PXA71_002156"
     CDS             3861..4127
                     /locus_tag="PXA71_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HDL5106230.1"
                     /translation="MATINDAFSFRTNTEIKNTAFDVIKNYGMTPSQVFNMFLTEIAK
                     TKTIPLSLNYQPNLETKLAMQEAKSGKNEVYASLEAFHKAMLAE"
     gene            4131..4400
                     /locus_tag="PXA71_002157"
     CDS             4131..4400
                     /locus_tag="PXA71_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin, RelE/StbE family"
                     /protein_id="HDL5106231.1"
                     /translation="MLQISPTNAYKRDFKKIAAELVGSSEYVEVMYCLINQLPLAEKY
                     RDHPLQGEWQGFRDCHIKPDLVLIYAVEDNLLRLVRLGSHAELFG"
     gene            4475..4738
                     /locus_tag="PXA71_002158"
     CDS             4475..4738
                     /locus_tag="PXA71_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106232.1"
                     /translation="MKNVLLFIVHFFLIAMLSIIPILIILGAIERDPYYTAWIFLSVF
                     LGIGALLYFATIVSKLINKGKTQTLEEKRYAEYWNNVKVNIPK"
     gene            4798..5508
                     /locus_tag="PXA71_002159"
     CDS             4798..5508
                     /locus_tag="PXA71_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HDL5106233.1"
                     /translation="MSGLGKLTVTLELENAKFQSAMTKSDYEAQKFAKNFIQNMDRAR
                     NHAKEFADRSTQYLKNIEQAAKNLNKNSEFSFLSTIGGHYQSMSSGILSAAKAYTDIQ
                     NKMKLVSGSSAEAAKRLTDVFDIATKTSQSTEAVSGVYQTFAQNAQSLGLAQKDVAEL
                     TKTVSQAVAASGASSSAASNALTQFGQSLLMGKMKAQEFNSLITQTPTIIQAMAKGLG
                     MTMAEFKAAVYRAKSLLG"
     gene            5486..5776
                     /locus_tag="PXA71_002160"
                     /pseudo
     CDS             5486..5776
                     /locus_tag="PXA71_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484718.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
     gene            5766..6485
                     /locus_tag="PXA71_002161"
     CDS             5766..6485
                     /locus_tag="PXA71_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDL5106234.1"
                     /translation="MKFSKYQLLVNKICFICGKKDCPQMKKSKDYKDFLDALEKGDVD
                     KADKIYNTKFSQFSKSFGHEMEKNLEKNRIPPIYQGVPFDSFDLYQHYSYGNGEALNL
                     SSVGLSNKIRPLVNKDKAFGKSNGSIESRFISQYKNEGRTSFSNAYDFTKEASGIADP
                     LWALGTATISGELKDIQIFPGGIARGNIHYSIRDRFTDPFDTFNFTKGEWNPNGTPYI
                     IQDSWIKSVRFSIDKKIKITP"
BASE COUNT         2078 a         1280 c         1252 g         1898 t
ORIGIN      
        1 ttaattgcct cttgattcag taatagcgat cgtgccttac ctgatttagc gacatcatta
       61 gtcacgattg ctacctttct tacaagatct atcttatccc aagtcattgt caaaatttct
      121 gtccgtctgg ctccagtcat caaagcaaac ttacagatag atttcatcca gtctgaactt
      181 aatttatcta ttagctgttt tgcttgttct ttggtgatcc agcgtacacg aattggcggc
      241 tctttctttt tcggtatgtg tgggactgca tccaacatac caagtttatg agcgatattt
      301 aatactctcg ataaagattt cacatactta ttttgcgtac tatgagatag aggctttttc
      361 gtatttgcat tctttttcgg gatatttagg ataatctcct gagctgttaa agagctgagt
      421 tcacgaccgg caaatttgga taaccagtat tcagcatgtc gcttttttgt ggctttatct
      481 tttaattctt cggccgcacg aacgtaatgg agcaaagcat cttcaaagat atattttctc
      541 ttttcctcga gtttatcctc tgcccacatt tcttgcttga gtttatcgtg atactgctga
      601 gcttcacgtt ttacaagcgt gcgagtgctt ctcttaattc tcttgccgtt tggggttgtg
      661 atatcaaccc accacggacc gtttgctttt cgtctgtaga tcgacatttt tcattctcct
      721 cgaccgacag agataaccct cggtcattat cagatcgttt tcttattggg tcaataccgg
      781 ctctcttttt tgctctttcc aaatcttctc ggttgatccg ccaaacttcc gagcctacca
      841 ttttaaaaaa tccccaatcc gccaaatgtt ggcggactgt atttggatgg caatttaatt
      901 cttttgccac ttgattaata gtaagatgtt ccattcatta ctttctccaa aataaatccc
      961 tctaaacgag ggattgtact aaataatcgt taagtctttg ccttatccac tgcatcaagg
     1021 cacagccata ccgtttccat ttggcacatt ggggaaacgg tgagctaata ccgcacaggg
     1081 gaatggctca atttcagaga accacaaagg cttacctaaa ccgtgccacg ctatacttgt
     1141 agcttcgata ccgctacaaa ttgagccgta ggtgaattgc attttttacc tatcctatcg
     1201 aaatactcaa attcccaata cggacaacat tttcttcgtt ggcttctagg atttctctca
     1261 acttagcata ggttttgggg catcttattt gacattcctc ttcgttgtag agagcctcta
     1321 atgtgtgcca ttcttttgca agtgcagccc aaactttccc aagttcagcc attttttcaa
     1381 tcctatttcg caaaaaaggg actgtctcca acaacagaaa gcaacgcctg aaatccgata
     1441 catcgtgtgg gtagccttct atttttggtc ttattccgta accaaggtaa aaagccattg
     1501 ttttactgct tacccctgtc tctccattgg caagccacca agcgattttg tcttctatgt
     1561 gcatttttcc tccaaaaatt aaccgcttgc ggaacaagtt ctacaagcgg ttgtcaagtg
     1621 ttcatttgtt caatgaacag ttcattgtga ataacaaaac cgcttgaatt acaagcggtc
     1681 tattttgttg cgtaaattta ctgttagcgt tgagccataa ccgactacga ccgctggccc
     1741 gaagatattg acggcgaggg ggacggcttc tcgcttgcct ccaaacggac gaccactttt
     1801 atgtcagccg gaatgacttt agtggagagt tcgcctggta aagatattgt cgatctcaaa
     1861 catatcccga aaagtagcca cgaagcccca ccgactaccg gtattttaag cctctacaat
     1921 cgaggcgacc gcagacgctt tagcgaaaca gttgataggt aagctatgaa aatccatacc
     1981 caaatccgaa aagaaatcct ttcattatta gaggcaaaat taacggacat cgagcatttt
     2041 tataacgggc aaccgaattt cattgatatt gacgaacagc aacttgccat ctctgtttat
     2101 cttgatgaga ttaaccgtca ggagcttacc ttatgcgatg aacagtggac agctcaactt
     2161 aacatcacga tttatctaaa atcagttgat gaggcagaag atgaattaga tgagtgggcc
     2221 gaaaaaatcc gtgaagtggt tgaaacatat tctgcgtttg aacatttaga gggcatcagc
     2281 ctttctcaat atcaatacga acaagatcaa aatcaaagaa cttggcactc agccacattg
     2341 atttttgatg ttgaatacta acaagcaaat aatccttata ggagaatcta caatggcaaa
     2401 aacaacaaaa gtccaaggca caaaatttag aattggcatt ggacgtgaag cccaaaaggc
     2461 aattacggct atcactttag ctacagcaac gcttactatt gccacatcag gctataaaaa
     2521 aggcgatgca atcgaaatta ccggttgtgg tcagttagac ggcatttatc ctgtattatc
     2581 tgtaacaggc gatcaagtca aattgtgcga agaagtaaac tggacgggta aagatttacc
     2641 ggctaattac accaaagcca aagcagcttt agtacaatac tcagaccaat tctgtgcggt
     2701 aaaaaacatt gaaaaatctg atgatacgtt aagtaccgaa gatgttacaa cggtctgctc
     2761 ggaaggtaca gaaaccgaac ccggagaaat tgaatttggc tcaattaaac tgagcttttt
     2821 tcacaagcca agtacggaaa tgcaaactcg cttacgcaaa ttgttttatg acaaatccac
     2881 ctttgcgtac aaattagaat tacctgataa ccacggcaca acctatggcg aaggtttcat
     2941 tgaggcgggt aacggcttta gtggcgaagt taaaggcaaa tatgaaggct cggtatcaat
     3001 taaaccaagc aaacgtgatt atttgctagt gtaattacaa aatattgctc caaatcgacc
     3061 gcttgtaata ttgcaagcgg tcttttttat cctaaatttt acaaaaggaa tcgacaatga
     3121 cactccgtga aaaactcctc gccaacaaac caaaattaca atctatcgaa atcaacggtg
     3181 agacctacta cctgcgtgaa gccactgttg gcgatatgaa taagcagatt tttgaaaccc
     3241 gaagctggct cattcaacaa gctgaacaag aaaatgttga attaccggca gaagatgatg
     3301 aaacctttga cgaagctctc aaccgttttg gcgaaaaata ccgccttgct caatcggttg
     3361 cctaccgttt atgtgacgaa aacggtgcat tactgtttaa cccacttaac attgacgatc
     3421 tcaatgcgat tgccgaatta gacagtaaag tgattatcga ctttaaccaa gccgtgtccg
     3481 ccccaaaaga ctcagcgagc gaagaaagtt ccaaataacc ctttcgctcg cactgggtaa
     3541 aacccttgaa gaaatcgaac aaatgcctga acgccacttt gccgaatatc agctttttta
     3601 tcaagagcaa ccttttgggc tttggcgtga ggactatcgt gctgctcaac ttgcccactt
     3661 aaccgcaatg atcaaccgtg acccaaaagg caaagcccct gaactctcgg aatttatgcc
     3721 gttttttaat cgggctgatg aagtagaagc aaatgaagat gatggcgttg cggattattt
     3781 ggcgaaaagg taaatctctt gtatttcatt gtaattctgt ctataattgg tgtaatacat
     3841 agaaatacag gagagataaa atggcgacta tcaatgatgc tttcagtttt agaacaaata
     3901 ccgaaataaa aaataccgca tttgatgtaa ttaaaaacta tggaatgaca ccctctcagg
     3961 tgtttaatat gtttttaacc gagattgcaa aaacgaaaac tattccgtta agtttgaatt
     4021 atcaacccaa tcttgaaaca aaattggcaa tgcaagaagc aaaatcaggt aaaaatgaag
     4081 tttatgcctc acttgaagca tttcataaag caatgttagc ggagtaaata atgctacaaa
     4141 tttcgccgac aaacgcatat aaaagagact ttaaaaagat tgcagccgaa ttagtcggta
     4201 gttcggaata tgtggaagta atgtattgcc taataaacca attaccattg gcggaaaaat
     4261 atagagatca cccactacaa ggtgaatggc aaggctttag agattgccat attaagcctg
     4321 atttagtgtt gatttacgct gttgaagata atctgctccg ccttgttcgt ttaggatcgc
     4381 acgctgaatt atttggataa tttctgtaaa aactaaccgc ttgcgatttt gtgctgtggg
     4441 cggtatagtt ggaatattaa caaaggaggg aaaaatgaaa aatgtacttc tatttatcgt
     4501 acactttttc ttaatcgcaa tgctctcaat tatcccaata ttaattattc ttggagcaat
     4561 cgaaagagat ccttactata ctgcgtggat tttccttagc gtatttttag gcattggagc
     4621 attgttatat tttgcaacca ttgtttctaa gttaattaac aagggaaaaa cacaaacatt
     4681 agaagaaaaa cgatatgcag aatattggaa taatgtaaaa gtcaatattc ccaaatagtc
     4741 taactgataa atgaccaaaa gctcgcttta tgcgggcttt tttattggag aaaaacaatg
     4801 agtggcttag gaaaattaac cgttacctta gagcttgaaa atgcaaaatt tcagtccgca
     4861 atgacgaaat ctgattatga ggcacaaaaa tttgccaaga actttatcca aaatatggat
     4921 agagctagaa atcacgccaa agaatttgcc gatcgctcaa cccaatattt aaaaaacatt
     4981 gagcaagcgg caaagaacct caataaaaat tctgaatttt catttttatc gactattggt
     5041 ggacattatc aatcaatgtc tagtggcata ttgagtgcgg caaaagccta tactgatatt
     5101 caaaataaaa tgaaattagt aagcggtagt tcagcagagg cagctaaacg attaactgat
     5161 gtgtttgata ttgcgactaa aacaagccaa agtacagagg ctgtttcagg tgtctatcaa
     5221 acatttgctc aaaatgccca atctctcgga ctggctcaaa aagatgtagc agaattaact
     5281 aaaacggtct ctcaagccgt tgctgcaagc ggcgcaagca gttctgcagc aagtaatgcc
     5341 ctaacccaat ttggtcaatc acttttaatg ggcaaaatga aagcccaaga atttaactcg
     5401 ctcattactc aaaccccaac cattattcaa gcaatggcaa aaggtttggg aatgacaatg
     5461 gcagaattta aagcagcggt ataccgggca aaatctttac ttggataaca ttcaagggca
     5521 aggttttgag agagtggata caccccaaat cggcgatgtg attttaatac aggtcggttc
     5581 tgatgtgccg aatcacgcag cgatttatat tggtgaacaa atggtaatcc accatagccc
     5641 gaaccgatta tctaagcgtg atttatatga cggttattgg ttacgccata cccacagtat
     5701 ttggcggcat aaactggcgg atagattgga ttttgacggc atatttaatg atataggaga
     5761 acaatatgaa atttagtaaa tatcaattat tagttaataa gatctgcttt atttgtggta
     5821 aaaaagattg tccacaaatg aaaaagagta aagactacaa agactttttg gatgctttag
     5881 aaaaagggga tgttgataaa gcagataaaa tatacaatac gaagttttca cagttttcta
     5941 aatcttttgg tcatgaaatg gaaaagaatt tagagaaaaa tcgtatacct cctatttatc
     6001 agggagttcc atttgattct tttgacttat atcagcatta ttcttatggt aatggagagg
     6061 cattaaatct ttcatccgtt ggattaagta ataaaattcg tcctctagtg aataaagata
     6121 aagcatttgg taaatccaat ggaagtatag aaagccgatt tatttcgcaa tataaaaatg
     6181 aaggacgcac atctttctcc aatgcttatg attttacaaa agaagcatcg ggtattgcag
     6241 atccgttatg ggcgttagga acagctacca ttagtggaga attgaaagat atacaaattt
     6301 ttcccggtgg tattgctagg ggaaatatcc attatagtat cagggacaga ttcactgacc
     6361 catttgatac attcaatttt actaaaggag aatggaaccc aaatggaaca ccttatatta
     6421 ttcaagatag ctggataaaa tcggtacgat tttcgataga caagaagata aaaataacac
     6481 cttaattatg atagtaatat aaaacaat
//
LOCUS       DANLRW010000118         6473 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.119, whole genome shotgun sequence.
ACCESSION   DANLRW010000118 DANLRW010000000
VERSION     DANLRW010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6473
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.119"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            57..980
                     /gene="oppB"
                     /locus_tag="PXA71_002162"
     CDS             57..980
                     /gene="oppB"
                     /locus_tag="PXA71_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HDL5106235.1"
                     /translation="MLKFIFKRLLEAIPTLLILITFSFFLMRLAPGSPFTSEKAYPPK
                     VMANIEAKYHLNEPLYKQYFLYMENLSKGDFGPSFKYKDQSVNNLIASAFPVSIKLGI
                     TAFIFAVLIGLTAGTIAALKQNSKWDYLVMGFSMTGIIMPSFVFAPLLVLMFAIYLKW
                     LPAGGWNGGQLYYMVLPVLSLTISYVAGIARITRGSMIEVLHSNFIRTAKAKGLPMRK
                     IIFKHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGTLTILFNAIVDILYAVIDPKIRYS"
     gene            995..1894
                     /gene="oppC"
                     /locus_tag="PXA71_002163"
     CDS             995..1894
                     /gene="oppC"
                     /locus_tag="PXA71_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HDL5106236.1"
                     /translation="MQNSSKNQPLVEVTSTIQGRSLWQDARRRFFRNKAAVASLIILC
                     CIILFITFAPMLMPFSYEDTDWNMMGIAPDFESQHYFGTDSSGRDLLVRVAIGGRISL
                     MVGIAGALIAVLIGTIYGAISGYFGGKVDMVMMRFLEILSSFPFMFFVILLVTFFGQN
                     IFLIFIAIGMVAWLNLARIVRGQTLSLKNKEFVEAAIVCGVSRRQIIWRHIVPNVLGL
                     VVVYASLEVPSLILFESFLSFLGLGTQEPMSSWGALLSDGAAQMETSPWLLAFPAFFL
                     CLTLFCFNFIGDGLRDALDPKDK"
     gene            1904..3499
                     /locus_tag="PXA71_002164"
     CDS             1904..3499
                     /locus_tag="PXA71_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5106237.1"
                     /translation="MELLAVNNLDVYLKTDEELVHAVRNVSFSIEKGQTLAIVGESGS
                     GKSVTSMAIMQLLPKNIVSFGERSSIIFEEQNLLTLSEKAMQTVRGDRIGMIFQEPMT
                     SLNPYMPIGKQVAETVQTHNPQISNAEAEKMVLETLQKVKIPDAEKKMICYPHEFSGG
                     QLQRIMIAMAIINKPDLLIADEPTTALDVTTQAEILDLMHDLQRDMGMAIILISHDLR
                     LVHKYSDLVCVMQNGEIIERGETETVFTNPQHPYTVELLTPIPTNLKGELPPNAPTLL
                     QGEHIKVDYILKRSLFGKPKKVFNALKDISLHLKTGETLGIVGESGSGKSTLGRAIMQ
                     ILDYRGNITFAGKTLANLNKAERQALKKDMQMVFQDPFNSLSPRLTVGEIIAEGLTVH
                     CPQMSKTERREKVMKMLEEVNLNPAMINRYPHEFSGGQRQRIAIARAIILEPKFVLLD
                     EPTSALDRSTQITVIELLNRLQKKYGLSYIFISHDLAVIKALSDRVIVMSQGEIVESG
                     DVTQIFENPQQEYTKRLILASNL"
     gene            3679..4074
                     /locus_tag="PXA71_002165"
     CDS             3679..4074
                     /locus_tag="PXA71_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5106238.1"
                     /translation="MKKLMIFATTAMIVSNLAHAAGEQSDAREAHESTVKTSTVKYSC
                     QNGKKLSVKYGFNKQGIPTYAEAKLSGKKRFMPINLYTTDATGTNFGDENNFSLYGDP
                     MEFTNHRKASVNIQSPASEILYKGCTPQK"
     gene            complement(4284..6443)
                     /locus_tag="PXA71_002166"
     CDS             complement(4284..6443)
                     /locus_tag="PXA71_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent
                     hemoglobin/transferrin/lactoferrin family receptor"
                     /protein_id="HDL5106239.1"
                     /translation="MQIKQTVLAIAITPFISQLSLAQETKISSIELDTIEVNEQQENL
                     LKQQAVMSNEDLVRYSTDMGVPQTGRFGPQGFNIRGVEGNQVAVTVDGISQAASNNYA
                     TFSRYSYYNKSRPEIDTELMSDVTIEKGSSTKVGNGALGGSVNYKTKTVSDILMKGRQ
                     FGGMLKYTYNGQNKENIETAGIAADGQYADALVMYSHRQGHETQTTSKGPDIMGSGRG
                     LPNPYKNNQYSYLAKLGLKWNDENRLELKTSKQRSKNAGQELSYSTVTLRDFLDVQEI
                     ETYGVTYLYTPKNSILENIKVAVTKQDTEISGINDQITIARGTKTDNTKRAFNTKNVE
                     GSLGVTFKPVDLGNTEHKLSTELGYGVSDFSFDMQTYTAGITPTDQNMQSPAKTKSFH
                     ILMGDSILLTQNLSAHLNARYEQSKLHSDDNSLSDKTFNNWAGDIGLNYQLSPVWQIG
                     YKLSRGFRTPTASEMFFNREVQGRGASQTFLANTNLKPETSLGNEISLVGNGSLGSLS
                     VAAYHTHYRNLIDLATIGNNIYQSQNVNRAKIKGVDINGTLDLNTAWNAIPQGFELNG
                     GFGYARGKRNDGTDLLTVQPLKALFGIGYRAVNNDWAIHLNGTYTQGKKAKYAQQYAI
                     LANTGYLSYDKSLTTYPYLSNSATVFDLVAHKKFGERAIVKVGVYNLFNKKYWTWDSL
                     RTIGITSPGVANSITGEGLNRYLAPERYVMASVEFKF"
BASE COUNT         1857 a         1285 c         1286 g         2045 t
ORIGIN      
        1 agccgttaat ttacgctatt aattgcctac caatataact aaaaagagtg gtgcttatgc
       61 tgaagtttat ttttaaacgt cttcttgagg cgattccaac cctactaatt ctgattacct
      121 tttccttttt cctgatgcgg cttgccccgg gtagcccatt taccagtgag aaagcctatc
      181 cgccgaaagt aatggcaaat atcgaggcaa aatatcacct gaatgaaccg ctgtataagc
      241 agtattttct ttatatggaa aatctgtcaa aaggcgattt cggtccatct tttaaatata
      301 aagatcaatc ggtaaataat ctgattgctt ctgcgtttcc tgtttcgata aaactgggca
      361 ttactgcctt tatttttgcg gtgcttatcg gtttaaccgc aggaactatc gctgcactta
      421 agcaaaatag taaatgggat tatttagtga tgggcttttc aatgacgggt attattatgc
      481 cgagctttgt ctttgctccg ctgttggtac tcatgtttgc gatttatctc aaatggttgc
      541 ctgccggtgg ttggaacggt ggtcagctct actatatggt tttacctgtt ctctctttaa
      601 ccattagcta tgttgccggc attgcccgta ttactcgtgg ttcaatgatt gaggtgttgc
      661 actctaattt tattcgcacc gctaaggcaa aaggcttgcc aatgcgtaaa attattttca
      721 aacacgcttt gcgtccggca ttgttgcctg tgatcactta tttaggcccg gcttttgttg
      781 gcattattac cggctcgatg gtaattgaaa gcgtgtttgg cttaccggga atcgggcagt
      841 tgttcgtaaa cggagcatta aatcgtgact attcattagt attaagccta accattttgg
      901 taggtacgct caccatttta tttaatgcga ttgttgatat tttatatgcg gtcatcgacc
      961 cgaaaattcg ttattcatag gagtaaagcg gaaaatgcaa aattcttcaa aaaatcaacc
     1021 gcttgttgag gttacctcaa ccattcaagg acgaagttta tggcaagatg cacgccgccg
     1081 ttttttccga aataaggcgg ctgtggcaag tttgattatt ctttgttgta ttattctttt
     1141 tattaccttt gccccaatgc taatgccgtt tagctatgaa gataccgatt ggaatatgat
     1201 ggggattgct ccggattttg aatctcaaca ctatttcggt actgattctt cagggcgtga
     1261 tttgctggtt cgagttgcaa tcggtggacg catttcgtta atggtaggga ttgccggtgc
     1321 attaattgcg gtgcttatcg gtacaatcta tggagcaatt tccggttatt tcggcggtaa
     1381 agtcgatatg gtgatgatgc gttttctgga aattttaagc tcattcccat ttatgttctt
     1441 cgtaattttg ctggttacgt tcttcgggca gaatattttc ctgattttca ttgcaatcgg
     1501 tatggtagcg tggctgaacc ttgcccgtat tgtacgtggt caaactcttt cgcttaaaaa
     1561 taaagagttt gtggaagcag cgattgtgtg tggcgtttcc cgccgtcaaa ttatttggcg
     1621 acacattgtg cctaacgttt taggcttagt ggtggtttat gcctcccttg aagtaccatc
     1681 tctgattttg tttgaatcgt tcttaagttt cttagggctt ggtacacaag agccgatgag
     1741 cagttggggg gcattattaa gcgacggagc ggcacaaatg gaaacctcgc cttggctact
     1801 ggctttccct gcctttttct tatgtttaac actgttttgt tttaatttta ttggtgatgg
     1861 cttgcgtgat gccctcgatc caaaagataa atagaggttt agaatggaat tattagcagt
     1921 aaataatctc gatgtttatt taaaaacgga cgaagaatta gttcacgcag tgcgtaatgt
     1981 ctcgttctcg attgaaaaag ggcaaaccct tgcgattgtg ggggaatcgg gttcgggtaa
     2041 atccgttact tcaatggcaa ttatgcagtt attgcctaaa aatatcgtct cattcggtga
     2101 acgctcaagc atcatttttg aagaacaaaa cttgcttact ctatctgaaa aagcaatgca
     2161 aacagttcga ggtgatcgca tcggtatgat tttccaagag ccaatgacct cactcaatcc
     2221 ttatatgccg attggcaagc aggttgctga gacggttcaa acccataatc cgcaaatcag
     2281 caatgccgaa gcggaaaaaa tggtgttgga aactttgcaa aaagtaaaaa ttcccgatgc
     2341 ggaaaagaaa atgatttgct atccgcacga gttttccggc ggtcagctac aacgaattat
     2401 gattgcaatg gcaattatca acaaacccga tttattgatt gccgatgagc cgaccaccgc
     2461 cctggatgtc acaacccaag cggaaatttt ggatttaatg cacgacttac agcgtgatat
     2521 gggaatggcg attatcttaa tttcccacga tttacgcttg gtgcataaat acagtgactt
     2581 agtctgcgta atgcaaaacg gcgaaattat tgagcgaggc gaaacggaaa ctgtgttcac
     2641 caatccgcaa catccttata cggtggagct acttaccccg attccaacta atttaaaagg
     2701 ggaattaccg ccaaatgcac caaccttgct tcagggtgag catattaagg tagattatat
     2761 tttaaaacgc tcgctattcg gtaagccgaa aaaggtgttt aatgcgttaa aagatatttc
     2821 attgcacttg aaaaccggcg aaacgctcgg cattgtaggc gaatccggct ccgggaaatc
     2881 tacccttggg cgtgccatta tgcaaatttt agattatcgc ggcaatatta catttgcagg
     2941 taagacactg gctaatctga ataaagccga acgtcaagcc ctgaaaaaag atatgcaaat
     3001 ggtgttccaa gacccgttca actcactttc tcctcgctta acagttgggg aaattattgc
     3061 tgagggctta accgtacatt gccctcaaat gagcaaaacc gaacggcggg aaaaagtaat
     3121 gaaaatgttg gaagaggtta atctcaaccc tgcaatgatt aaccgctatc cgcacgaatt
     3181 ttcgggcgga caacgccagc ggattgcgat tgcaagggca atcattttag agccgaaatt
     3241 tgtattgctt gatgagccaa cctcagcact tgaccgctct actcagatca ctgtaattga
     3301 attgcttaac cgcttacaga aaaaatacgg cttaagttat attttcatca gccacgattt
     3361 ggcggtcatc aaggcactta gcgaccgagt gattgtaatg agccaaggtg agattgtaga
     3421 aagcggtgat gtcactcaaa tttttgaaaa tccacaacaa gaatacacca agcggttgat
     3481 tttagcctct aatttgtaac cccttccaca aggtcttatt ctaccaaaaa acaagacctt
     3541 gtcattttat gctagcaaaa cattgtaatt ttgatatttt atttcaattt tttgaaaaaa
     3601 tatggaactt tatataaaac tcactttcta aacaatacgt tatctgaact aagataacgc
     3661 ttatttaaag gaaaatatat gaaaaaattg atgatattcg caacaactgc catgattgta
     3721 agcaatttag cccatgcagc aggtgaacaa agtgatgcaa gagaagccca cgaaagcacc
     3781 gtaaaaacct caactgttaa gtatagctgc caaaacggca aaaaattaag cgtgaaatac
     3841 ggcttcaata aacaaggcat tccaacctat gctgaggcaa aattaagcgg taaaaaacgt
     3901 tttatgccga tcaacctata cacgacagat gcaaccggca ctaactttgg tgacgaaaac
     3961 aatttcagcc tttacggtga tccaatggaa tttaccaacc accgtaaagc atcagtaaat
     4021 atccaaagcc ccgcaagtga aattttatat aaaggttgca cacctcaaaa atagataaaa
     4081 agtaaaatga gtccgctctg ataagtggct ttttaatagc tgtttattgc agataggaaa
     4141 gcattttgtt tttatctact atccagaaac aagcggttaa atttgtttaa ttttttacaa
     4201 aaaatgggcc aaaattaacc gcttgtttat tactataaag aaataagtac gtaaaaatta
     4261 actcttacat ttaatgctta tctctaaaat ttaaactcca ctgatgccat tacatagcgc
     4321 tctggagcaa ggtaacgatt taagccttcg ccagttatac tgttggcaac tccaggacta
     4381 gttataccaa tagttcttaa actatcccaa gtccaatatt ttttattaaa gagattataa
     4441 accccaactt taacaatcgc tctttctcca aactttttgt gtgcaactaa gtcaaatacg
     4501 gtggctgaat tacttaagta tgggtaagtg gttaatgatt tatcgtaact taaataccca
     4561 gtattggcta aaatagcata ctgttgtgca tattttgctt ttttgccttg tgtgtatgtg
     4621 ccgtttaggt gtatcgccca gtcattgttc acagctcgat aacctatgcc gaacaatgct
     4681 tttaacggtt gaaccgtgag taagtcggta ccatcattac gtttgccacg agcataacca
     4741 aatccaccat taagctcaaa gccttgtgga attgcattcc acgctgtgtt taagtctaaa
     4801 gttccgttaa tatcaacacc tttgatttta gctcggttaa cattttgcga ttggtaaata
     4861 ttgttaccaa tagtggcaag atcaatcaga tttctatagt gggtatggta agcggctacg
     4921 ctcaagctac ctaatgaacc attacctacc agtgaaattt cattacctaa gcttgtttcc
     4981 ggttttaagt tagtatttgc taagaaagtt tggcttgctc cacgcccttg aacttcacgg
     5041 ttaaagaaca tttcacttgc ggtaggtgtt ctaaaaccac ggctgagttt atagccaatt
     5101 tgccatacag gagagagctg ataatttaaa ccaatatctc ccgcccaatt gttaaaggtt
     5161 ttatctgaca aactattatc atcagaatgt aatttcgact gctcatatcg agcatttaaa
     5221 tgagcagata gattttgtgt cagtaaaata gagtctccca tcaaaatatg gaaagacttg
     5281 gtttttgccg gagactgcat attttgatcg gttggcgtaa tacctgctgt ataggtttgc
     5341 atatcaaaac tgaaatcaga tacaccatag cctaattccg ttgacaattt atgttcggta
     5401 ttacctagat caacaggctt gaatgtaaca cctaagctac cttcaacatt tttagtatta
     5461 aaagcccgtt tggtattatc tgtttttgta ccacgggcaa tagtgatttg atcgttaata
     5521 cctgaaattt cagtatcctg tttggttacc gcaactttaa tattttcaag aatactgttt
     5581 tttggagtgt ataaataagt aacgccataa gtttcaattt cctgcacatc caaaaaatca
     5641 cgtaatgtga cggtagaata agaaagctct tgaccggcgt ttttactgcg ttgcttagaa
     5701 gtttttaatt caaggcgatt ttcatcattc cattttagcc ctaattttgc caagtagctg
     5761 tattgattat ttttgtaagg atttggtaaa ccacgaccac ttcccataat atccggacct
     5821 ttagacgttg tttgtgtttc gtgtccttga cggtggctat acataaccaa agcatccgca
     5881 tattgaccat ccgcagcaat acctgccgtc tcaatattct ctttattttg accgttatag
     5941 gtatatttca acatcccacc aaattggcga cctttcatta aaatatcact tacggtttta
     6001 gttttatagt tcacagagcc gcctaatgcc ccattgccta cttttgtgct tgagcctttt
     6061 tcaatggtta catcgctcat taattcagta tcgatttcag ggcgagattt attgtagtaa
     6121 ctatagcgac taaaggtggc atagttattt gatgctgctt gcgatatgcc atcaactgtt
     6181 actgccactt gattaccttc aacaccacgg atattaaacc cttgtgggcc aaagcggcct
     6241 gtttgcggaa cgcccatatc agtactataa cgtactaaat cttcattgct catcaccgct
     6301 tgctgtttaa gtaggttctc ctgctgctca tttacttcaa tagtatctag ttcaatgcta
     6361 ctaatctttg tttcttgagc taaggagagt tgagaaataa agggagtaat cgctattgct
     6421 aatacagttt gctttatttg catattttag atcctctagt tagtttaatc cgt
//
LOCUS       DANLRW010000119         6354 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.120, whole genome shotgun sequence.
ACCESSION   DANLRW010000119 DANLRW010000000
VERSION     DANLRW010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6354
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.120"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            20..1033
                     /gene="cas1c"
                     /locus_tag="PXA71_002167"
     CDS             20..1033
                     /gene="cas1c"
                     /locus_tag="PXA71_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003762781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-C CRISPR-associated endonuclease Cas1"
                     /protein_id="HDL5106240.1"
                     /translation="MRKLQNTLYITTQGSYLHKERETLVVEQDRKKVAQLPIHSIGHI
                     FCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNP
                     VPVARNIIAAKIQASKRVLQRQIRNHGENADLQSTITALNYSLQQLKTADNLDLIRGI
                     EGDAAARYFGVFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSIVGKDISGALQGV
                     GLDPQIGFLHADRSGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAV
                     TLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPF
                     LMR"
     gene            1100..1393
                     /gene="cas2"
                     /locus_tag="PXA71_002168"
     CDS             1100..1393
                     /gene="cas2"
                     /locus_tag="PXA71_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005540845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDL5106241.1"
                     /translation="MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVT
                     PAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL"
     repeat_region   1585..2687
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=1585..1604
                     /rpt_unit_seq="cagccacctacgcgtggctg"
     gene            2937..4412
                     /gene="rng"
                     /locus_tag="PXA71_002169"
     CDS             2937..4412
                     /gene="rng"
                     /locus_tag="PXA71_002169"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005610087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HDL5106242.1"
                     /translation="MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYK
                     GRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQ
                     DIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVE
                     PYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQ
                     RVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKA
                     IQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAH
                     QLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRK
                     RTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVA
                     EYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM"
     gene            4566..6068
                     /gene="lysS"
                     /locus_tag="PXA71_002170"
     CDS             4566..6068
                     /gene="lysS"
                     /locus_tag="PXA71_002170"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012054447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDL5106243.1"
                     /translation="MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKD
                     LHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSD
                     SVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLE
                     TRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKP
                     FITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEY
                     YQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGN
                     GIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAE
                     ISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEA
                     MFKDEDFIVALEHGLPPTAGEGLGIDRLVMIFANAPSIRDVILFPAMRQK"
BASE COUNT         1879 a         1166 c         1464 g         1845 t
ORIGIN      
        1 gttaaaggga ttttcaacca tgcgcaaact acaaaacacc ctctacatta ccacccaagg
       61 tagctatttg cacaaagagc gagaaacctt ggtggtggag caagatcgga agaaagtggc
      121 acagttgccg attcattcca ttgggcatat tttttgtttt ggcaatgtgt tagtgtcgcc
      181 gtttttaatg ggattttgtg gcgaaaataa cgtaaattta gcgtttttta ccgaaaatgg
      241 gcgttatctt gggcggttgc aggggcggca aagtggtaat gtattgttac gccgagccca
      301 gtataaaaag tcggagacca accctgttcc tgtggctcgc aacatcattg cagccaaaat
      361 tcaagcatct aagcgggtgt tacaacggca aattcgtaat cacggcgaaa atgctgacct
      421 tcaatcgaca attaccgcat taaattacag cctgcaacag ttgaaaacag cagacaattt
      481 ggatttgatt cgtggcattg agggcgatgc tgcggctcgt tattttgggg tgttttctca
      541 tcttatcaaa gaaaatagcg gtttccactt tgacggacgt aatcgccgcc cacctcgtga
      601 cggtgtgaat gcgttgcttt catttcttta tagcattgta gggaaagata ttagcggggc
      661 attgcaaggc gtggggcttg atccccagat tggctttttg catgcagatc gttcggggcg
      721 agatagctta gctcaagata ttttggagga atttcgagcg tggtgggtgg acagaatggt
      781 gctgtcgctg atcaatcgag ggcaggttaa gcctgatgat tttgtgacgg aagccagtgg
      841 tgcggtaacg ctcaagcctg aagccagaaa attactattt caaaccttgc aagcgaaaaa
      901 acaagaaaaa atcatccacc catttttaga ggaagaagtg gaaatcggct tgttacctta
      961 tatccaagcg atgttattgg ctcgtcattt gcgtggcgat ttggcagaat atccgccgtt
     1021 tttaatgcgt taaaatctgc aaaattttgt tgaaatttga ccgcttgttt atgttttatt
     1081 cattgaggaa ttagcaacta tgctgatgtt gattacctac gacatttcat ttgatgaccc
     1141 cgaagggcag gctcgcctac gccgtattgc taagcattgt ttggattatg gtgtgcgggc
     1201 gcaatattct gtgtttgagt gtgatgttac tcctgctcag tgggtaacat tgaaaaataa
     1261 attattggca acttacaacc cagactgtga tagtttgcgc ttttaccatt taggcagtaa
     1321 atggaggaat aaagttgagc accatggcgc aaaaccttca gtggatattt ttaaagatac
     1381 gctgatttta taaatcgcta gcctgtagtt ctcataaaaa tgtagcaagg ttagcgaatc
     1441 tatattgttc tttaataatc aaggaattag aaaaaataag gcacaatata ttggcgatat
     1501 gctatacttt atccactctc tacaaaacgt tagcgaataa agggctaaaa agcctgatat
     1561 ttcaatacgt tatcttatag ggaccagcca cctacgcgtg gctgcgaatt gaaaccctat
     1621 aacgagcaat ggcattttga tctacggtaa accagccacc tacgcgtggc tgcgaattga
     1681 aacttcttga atacctccgg agtcagttaa gataaggcca gccacctacg cgtggctgcg
     1741 aattgaaacc tttttcaaga atcaagatta agagatccaa acaaccagcc acctacgcgt
     1801 ggctgcgaat tgaaaccacc gctgctactt cggttatcgg agtagtttgc acccagccac
     1861 ctacgcgtgg ctgcgaattg aaacgtggca cagtaacacg agcagatgct gataaacgcc
     1921 cagccaccta cgcgtggctg cgaattgaaa ccagcagccg ttgttaccgt ggtgcaatgc
     1981 ttgcgccagc cacctacgcg tggctgcgaa ttgaaactac acttattgcc atagggtagt
     2041 agtaatcttt tacccagcca cctacgcgtg gctgcgaatt gaaactgcga tttttggatt
     2101 tttcgggcga taaatgatac cagccaccta cgcgtggctg tgaattgaaa ctcgtggctg
     2161 gttatacaaa gaaaagcatt gttgggcagc cacctacgcg tggctgtgaa ttgaaactta
     2221 aatctaaagc taaagctatt ttattaatta aagcagccac ctacgcgtgg ctgtgaattg
     2281 aaactttacc gtttaccgat tggattttaa tgctagaggc agccacctac gcgtggctgt
     2341 gaattgaaac cctaaattgc cgtaaaaatc tgccattagc tacgcgcagc cacctacgcg
     2401 tggctgtgaa ttgaaacctc ataacgaatc caatcctgtt cggttaatcc ccgcagccac
     2461 ctacgcgtgg ctgtgaattg aaacaggggc gtgtaccgca atcaatttta attataacca
     2521 agcagccacc tacgcgtggc tgtgaattga aactttatct gttgcggtca attgtatatc
     2581 ttgaatttgc agccacctac gcgtggctgt gaattgaaac ctcgtcttga attggaaaat
     2641 caagggcgac aataggcagc caccttcgcg tggctgtgta ttgaaacggt gtacccacaa
     2701 atcctatgtt ttcgccattg gctgctacct tcgcatcaat atatattgaa atatcaatgg
     2761 caaatttgta tgttgttaat tagactgatt gcatctgcta tgtatcatag taatgacgaa
     2821 aatattctat tttgcaaaaa ataatcagaa attacccgct tgttcgaact gagtttttgt
     2881 tttctaagat gtgaaatgat acactttaga tagttttaaa atatagagac agtaagatga
     2941 gtagtacgga attattagtg aatgttaccc caagcgaaac aagggtagcg ttggtagaaa
     3001 acggaatatt gaaagaatta catattgagc gggaagctaa acgcgggatt gttggtaata
     3061 tttataaggg aagggtgaca agggtattac caggtatgca atctgctttt gtggatatcg
     3121 gcttggagaa ggctgctttt ttgcacgctt ctgacatcgt ttcgcatacg gaatgtgttg
     3181 atgaaaatga aaagaagcaa tttctggtta aagatatttc tgaattggtg cgtgaagggc
     3241 aagatatagt tgtacaagta gtgaaagatc caattggtac taaaggagct aggctcacta
     3301 ctgatattac gttaccatct cgttatttag tgtttatgcc agaaaatagc catgtgggag
     3361 tatctcagcg gattgaaagt gaagaagagc gtgctcgttt aaaaagcttg gttgagcctt
     3421 attgtgatga acttgggggc tttattgtac gtaccgctgc agaagaggca actgaagaaa
     3481 gtttaaagca agatgttgaa tttttaaaac ggttgtggcg taaagtatta gaacgaaaag
     3541 ggaaatattc cgcaaaatca atgctttatg gagagcttgc gcttgctcaa agggtactgc
     3601 gtgattttat tggtacacat atcaattcgg ttagaatcga ttcaaagcta acttatgagc
     3661 aagtgcgaga atttttagct gagtttatgc cagaattaac ggattgtgtc accctctata
     3721 ccggtcagca aactttattt gatgcctatg gtgtagaaaa ggcaatccaa aaggcattgg
     3781 ataaacgggt tgatttaaaa tcggggggct atttaattat tgagcaaact gaggcgatga
     3841 cgactattga tattaatact ggtgcttttg tcggacatcg taaccttgca catacgattt
     3901 tcaacacaaa tattgaagca atacaggcaa ttgcacacca gctacagttg cgtaatttag
     3961 gtggtattat cattattgat tttattgata tgcaagagga agaacatcgt gagcgcgttt
     4021 tacaatcgtt acaagaggca ttaaaaggcg atcgtgttaa aaccaatgtg aatggcttta
     4081 ctcagcttgg cttggtggag atgaccagaa aacgtacaag ggagagtcta gagcgaattc
     4141 tttgttgcga ttgccaagct tgccaagggc gtggcacagt gaaaactgta gagacggttt
     4201 gctatgaaat tatgcgtgaa attgtgcgtg tacatcattt gtttaagaca gaaaatattc
     4261 acgtttatgc agctaaagat gttgctgaat atttaattaa cgaggaaagc cacgcattat
     4321 tggctgagct tcaggcgttt atcggtaaaa aaattgagat taaacttgag ccatattatc
     4381 atcaagagca gtttgatgtg gtcgtgatgt aatctattac ttggttgagg ctaaatagtt
     4441 agcctcaata tcgttagtta caaaaaattt agaaaatctg accgcttgtt tcctatccaa
     4501 attcctcaaa ataacgtata atcgtccagt tttatttatc cttttttgaa atctaaggta
     4561 attcaatgtc tgaagtagaa aatcaagaat tagatctaaa cggtgaaatg ttagcccgcc
     4621 gtgaaaaatt aaacaaaatc cgtgagcagg gtaacgcatt tccaaataca ttccgtcgtg
     4681 atgcgttagc caaagatctg cacgctcaat atgatgcagt ggaaggtgaa accttaaaag
     4741 aacagaatat tcaagtgaaa gttgccggtc gtattatgtt aaaacgagta atgggtaagg
     4801 catctttctt taccattcaa gatgtgagcg gtgcgattca gctttatgta gctcgtgata
     4861 acttaagtga cagcgtttac gaagaaaaag tcagcctttg ggatttaggc gacattgtgg
     4921 gcgtcgaagg tgcgttattt aaaaccaaaa ccggtgaatt aacggttcgt tgctctgaag
     4981 ttcaactttt aaccaagtct ttacgcccgt tgccggataa acatcacggt ttaacggatt
     5041 tagaaactcg ttatcgtcag cgttatttag acttgatttc taatgaagaa tctcgccgta
     5101 cttttatgat ccgctcgcaa gtagtttcag gcattcgcaa attcttctta gaaagagact
     5161 ttattgaagt tgaaacgcca atgttgcaag tgatcccggg cggtgcggca gcgaaaccgt
     5221 ttatcactca tcataatgcg ttagatgtgg atatgtatct gcgtattgct ccagagcttt
     5281 acttaaaacg tttagttgtg ggtggttttg agcgagtatt tgagcttaac cgtaacttcc
     5341 gtaacgaagg ggtttcagta cgccacaatc ctgaatttac aatgattgag tactaccaag
     5401 cctatgcgga ttatcacgat ttaatggata ataccgaaga actgttacgc caattagcct
     5461 tagatattct tggcacaact gacgtacctt atggtgatta tgtattcgat ttcggtaaac
     5521 cgtttgagcg tattacgatg cacgatgcga ttgtgaaata tggtaacggc attcaacgtg
     5581 aagatttaga cagcttcgag aaaagtgtgg aaattgcgaa aggcttaggc attgaaattc
     5641 aaaaatcttg gggtttaggc tcggtagtca atgcgatttt tgaagaagtg gcagaacatc
     5701 aattaattca gccaactttc ttgatggctc acccggcaga aatttcacca ttagctcgcc
     5761 gtaatgatga aaacccagag gtaactgatc gttttgagtt atttatcggt ggtcgtgaaa
     5821 ttggtaatgg tttctcagaa ttaaacgatg cagaagacca agcagagcgt tttgatgctc
     5881 aagttgcggc gaaagatgcc ggtgatgatg aagcaatgtt taaagatgaa gactttatcg
     5941 tggcattgga acacggtctg ccgccaacag cgggtgaagg tttaggaatt gaccgcttag
     6001 taatgatttt cgctaacgcc ccatcaatcc gtgatgtaat tttattccca gcgatgcgtc
     6061 agaagtaatc agaaatagaa caaaagcaca cttcggtgtg cttttttgta ttacaagcgg
     6121 tcaaatttat aataaatatt tcaaacttaa gtgagcataa ggcttattat aaataaaacg
     6181 ttccgaaaaa acattgaatt tcattaaaaa attcctttat ttatcaaata aatgcgattt
     6241 gtttcggaac gttttttaat gcttattttg caacatacgg attatcaatg gaaagcgttg
     6301 ctgtagacat tgtgcctcct agtacaaaaa aaccgcttgg tttccctaag cggt
//
LOCUS       DANLRW010000120         6347 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.121, whole genome shotgun sequence.
ACCESSION   DANLRW010000120 DANLRW010000000
VERSION     DANLRW010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6347
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.121"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(1..886)
                     /locus_tag="PXA71_002171"
                     /pseudo
     CDS             complement(1..886)
                     /locus_tag="PXA71_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771612.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
     gene            complement(879..1847)
                     /locus_tag="PXA71_002172"
     CDS             complement(879..1847)
                     /locus_tag="PXA71_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDL5106244.1"
                     /translation="MFSFFRLNLFLLILLIPISASVGVADFHWSEIFHSSEQSQIFFI
                     SRLPRTLAVILVGATLAVAGMVLQIVLKNRFIEPSMIGTSQSAAIGILLASLLFPTSA
                     LLLKMSIATLSALMGMGLFMLLIRQLPPHQQLMLPLIGIVFGNVIEAISTFIAYETDS
                     LQVLSIWFSGDFSGILAGRYELLWITAILAVVVYVMADQLTIAGLGENISTNLGINYK
                     QMTWLALIVVAMITAIVVVTVGQIPFIGLVVPNIVSRIAGDRLRKNLPAVVVLGANLV
                     LICDILGRAINAPYEVPISTIFGIIGTVIFLYLLLKEKRAEEKARG"
     gene            complement(1941..2840)
                     /locus_tag="PXA71_002173"
     CDS             complement(1941..2840)
                     /locus_tag="PXA71_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005700892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HDL5106245.1"
                     /translation="MIKKALFALTATAVFAASAFAKDVTIPTARGEVTFKETPSKIAV
                     FDTGSLDTLQALGVKIDGMPEFKVLSYLKPSADKAVNVGTVFEPDLEALNSLNPDLII
                     VGTRTAKKFDEVSQIAKTIDMTDNGDKLIESGLQRLDSFGKLFNKEAETEKLKAEINT
                     LLDQTKAAVKGKGNGLIILVNGGKISAFGSGYRLSWIHDNLGIPMADSSIKNTGHGQP
                     VSFEFIQKLNPDWLFVLDRIAAIGQEGQSAQQVLDNELVRQTKAWKNGNIVYLSAASY
                     LAPGGYEQMKTDLTNIKTAFEKK"
     gene            3014..4477
                     /locus_tag="PXA71_002174"
     CDS             3014..4477
                     /locus_tag="PXA71_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDL5106246.1"
                     /translation="MAEYSGTTQEKMKDKQVEQINISPHSIEAEQAVLGGIMLSNDHW
                     DNVAERVQPHDFYNYAHRIIFEQMAELVRHNKPIDIITLDQALKDKGVLQDVGGFAYL
                     AELSKNTPSAANILAYADIVRDRSDLRSVISAGNQIAEMGYKTKGRNSKEVLDEAERI
                     VFEIAEKRNNANEGPQRIDDILLKTLARMDTLSKNRHNGGVTGVSTGFVDLNKKTAGL
                     QPSDLIIVAARPSMGKTTFAMNLCENASLVDIEDKDDLDEQGNPKKKPAKPVLIFSLE
                     MPADQIMMRMLASLSRVDQTKIRTGQISDDEDTAKISSTMAILQERNNIYIDDSSGLT
                     PTELRSRARRIYRENGGLSLIMVDYLQLMRAPGFADNRTLEIAEISRSLKALAKELEV
                     PVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSDLKGIAE
                     IIIGKQRNGPIGRVRLTFQGQYSRFDNYTGGHYDDEY"
     gene            4467..4772
                     /locus_tag="PXA71_002175"
     CDS             4467..4772
                     /locus_tag="PXA71_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgL domain-containing protein"
                     /protein_id="HDL5106247.1"
                     /translation="MNTKPTQPITLCAIYRSKAKEGMYLYVPKRDQFEQVPETLRQLF
                     GKPEFVMMFNLTGEKPLVRAKNEEVLQLLIEQGYYLQMPPPPENLHKAFIAQQKGEK"
     gene            4772..5221
                     /gene="nrdR"
                     /locus_tag="PXA71_002176"
     CDS             4772..5221
                     /gene="nrdR"
                     /locus_tag="PXA71_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HDL5106248.1"
                     /translation="MRCPFCSTEETKVIDSRLAASGYQIRRRRECISCKERFTTFESA
                     ELVVPYVIKNNGSREPFDAEKLRTGLRRALNKRPVSADDVEKAISQIIIQLQAMGERE
                     VPSRHIGTLAMNALKQLDKVAYIRFASIYLSFSDIEEFIKEIEKLKE"
     gene            complement(5295..5477)
                     /locus_tag="PXA71_002177"
     CDS             complement(5295..5477)
                     /locus_tag="PXA71_002177"
                     /inference="COORDINATES: protein motif:HMM:NF015431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5106249.1"
                     /translation="MALLADSTVDRLVAENGLVEVLGETENPKFDLTMIYAAHRYPSS
                     IVRAFVGFVLEQVKAN"
     gene            complement(5446..6156)
                     /locus_tag="PXA71_002178"
     CDS             complement(5446..6156)
                     /locus_tag="PXA71_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5106250.1"
                     /translation="MNLNTLRLFVAVIQHGSLSKASERLNVPIATISRQIADLEKELN
                     IQLFDRQKSGVKPTMAGQRLYEQVHLSIEQLATAKEVLFEEQGNLKGKLRLSASPACE
                     PVLAWIADFQAAYPQVQVHCTLTDRLLDLSADGIDVAFRIGQLHGEQFIAKKVGQIGS
                     KWVAHPKFLARFGTPSTVKDLKNFPIAAWAKNEASVITLGTGRQAVEIPYLFSSNDSY
                     AIEYMAKSSGSACRQHGG"
     gene            complement(6153..>6347)
                     /locus_tag="PXA71_002179"
     CDS             complement(6153..>6347)
                     /locus_tag="PXA71_002179"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106251.1"
                     /translation="KFLDFLKEHKLKLVWTVLGEKHAYKESKFLQELSGVYYLYGKNQ
                     QVQGSIKHFIQEIEHWGEKQ"
BASE COUNT         2034 a         1296 c         1293 g         1724 t
ORIGIN      
        1 ttcaataacg acactcagaa ccccttgcat tttcagcact tgctcgaaga ttgcctgccc
       61 taaaattaag gtgatggcag agattaaaaa agtcattggt attcgcacgc tatggcaaac
      121 agtcgggcta attgcattaa caatggcaca aacaagtagc cctagaaata gaatcgggcc
      181 aacaagtgcg gttgaaacag acaccaacaa tccacaacag attagtaatt gacgtgaaaa
      241 ttgatgatat tctaacccaa gcccaattgc cttatctttg ccaagtaaca aaatatctaa
      301 tttatgccgt tgtaaccaga cccaaatggc agagagaata gcgatacagc ctccaatcca
      361 aagtaatgtg ggggtagtca ggttaaatga ggcaaagaag agccttgagc aacggcaaac
      421 tctgttgggt cgacattcgt tgcaacaaat tatttaggct tctaaataag acaccaaaga
      481 tgacaccgat taaaagcatt cgggttaaat cggatcgatt tcgattcagt gaactaaata
      541 gtaatattga tgcccctagc attaacaagg tttcaaagaa aaacttatag cttgggtcta
      601 actgagtaaa gcctaaaccg ccaaataaaa atactaacga ggtttgcaat agcaagtaga
      661 gcgaatcgaa ccccaaaata cttggagtta aaataggatt atgtgtgagt gtttggaata
      721 gcagggtcga aataccaatc gtataagcaa tagtacagag caaaataagc tttttgccac
      781 gcagttgcaa tataaagtcc caattacctt tcgcattata ggtcatataa aacagaatac
      841 ttgctaataa gattaagctt aaaacgataa agcgtgatct aaccacgagc cttctcctca
      901 gcccgtttct ctttgagcaa taaatagagg aaaatcactg tcccaataat cccaaaaata
      961 gtagaaatcg gcacttcata aggggcattg atggctcgcc ctaaaatgtc acaaatcagg
     1021 actaaattcg cacctaacac cacgaccgca ggcagatttt tacgcaatcg gtcacctgct
     1081 atgcgagaga caatattagg gacgaccaag ccgataaacg gaatctgtcc aaccgtcacc
     1141 acgacaatag cggtaatcat cgccaccaca attaaggcaa gccaagtcat ttgtttgtag
     1201 ttaatgccta agttggtact aatattttca ccaaggcctg caatggttaa ttgatctgcc
     1261 atcacataaa ccacaacagc cagaatagcg gtaatccaga gcagttcata ccgacctgcc
     1321 aaaataccgg agaagtcgcc ggaaaaccaa atcgaaagca cttgtaggct gtcagtttca
     1381 taagcaataa aagtgctgat agcttcaata acattgccaa aaacgatccc gattaatggg
     1441 agcattaatt gttgatgagg cggtaattga cgaatgagca acataaaaag ccccattccc
     1501 attaatgcac ttaatgtggc aatagacatt tttaacagta atgctgatgt tgggaaaagt
     1561 aaactagcaa gtaaaatacc aattgccgca ctttggctag tgccaatcat actaggctca
     1621 ataaagcggt tcttcagcac aatttgtaat accatacctg caacggctaa ggttgcaccg
     1681 actaatatca ctgcgagcgt tcttggtaaa cggctgataa aaaagatctg actttgttcg
     1741 gaagaatgaa aaatttcact ccaatgaaaa tctgccacac ccacactggc actgattgga
     1801 atgagcaata ttaaaagaaa tagatttaat ctaaaaaaag agaacatagt gataaatagc
     1861 aagcggtcat attctctctc ttttttacaa atgcaggcac ttgcaaaaat aggaggaaat
     1921 ctgaccgctt gtaaggttaa ttattttttc tcaaatgctg ttttaatgtt agttaggtcg
     1981 gttttcatct gctcataacc acccggcgct aaatatgagg cagcacttag ataaacgata
     2041 ttaccgtttt tccaagcttt agtttgacga actaattcat tatccaacac ttgttgggct
     2101 gattgacctt cttgtccgat agccgcaata cggtctaaca caaacaacca atccggattg
     2161 agtttttgga taaattcaaa cgaaacaggc tgaccgtgac cggtattttt aatgctagaa
     2221 tctgccattg gaatccctaa attatcgtga atccaactta aacgataacc tgaaccaaat
     2281 gcagaaattt tgccaccatt gactaaaata atcagtccgt tacctttacc ttttactgct
     2341 gctttggttt ggtctaataa agtattaatt tctgctttta gtttttcggt ttccgcttct
     2401 ttattaaata atttgccgaa agaatcaaga cgctgtaatc cgctttcgat taatttatcg
     2461 ccattatccg tcatgtcgat ggttttcgca atttggctga cttcatcaaa tttttttgct
     2521 gtgcgtgtgc caacaatgat caaatccgga tttaaagaat ttaacgcttc taaatccggc
     2581 tcaaataccg taccgacatt caccgctttg tctgcactcg gtttaagata agaaagcacc
     2641 ttaaattcag gcataccgtc aatttttaca cctaaggctt gtaaagtatc caaacttccg
     2701 gtgtcaaaca cggcaatttt agacggggtt tctttgaaag taacctctcc acgtgcagtt
     2761 ggaatagtaa catctttggc aaatgcagaa gcagcaaaca cagcagttgc ggtcaatgca
     2821 aacaaggctt ttttaatcat tggataactc catttatatt gaaaataatt ctcaaagatt
     2881 ttaacgaaaa ttgattttaa gtaaagcgga aaataacaag cgggcgaatt ttgcctaaaa
     2941 tttgcaaatt tcaatttaat taaaattccg atacactatg tacatcaata cgtcattata
     3001 gcaagagaaa aatatggcag aatatagcgg aacaacccaa gagaagatga aagataagca
     3061 ggttgagcaa attaatatct caccacattc gattgaggca gagcaagcgg tgcttggtgg
     3121 cattatgctc agtaatgatc actgggataa tgttgctgag cgtgtacaac cgcacgattt
     3181 ttacaactat gcgcatcgaa ttatttttga acaaatggcg gagttggtgc gccacaataa
     3241 accgattgat attattacgc tggatcaagc cttaaaagac aaaggggtgc tgcaagatgt
     3301 aggaggtttt gcctatttag ccgagctttc taaaaatacc ccgagtgcag caaatatttt
     3361 agcctatgcg gatattgtgc gagatcgttc cgatttaaga agtgtaatca gtgccggcaa
     3421 tcaaattgcg gaaatgggct acaaaacgaa agggcgtaac tccaaagaag tgttagacga
     3481 ggcagagcga attgtgtttg aaattgcaga aaaacgcaat aacgccaatg aaggtccaca
     3541 acgtattgac gatattttgc ttaaaacact cgctcgaatg gatacgctat ctaaaaatcg
     3601 ccataacggc ggagttactg gtgtttctac cgggtttgtt gatctcaata aaaaaaccgc
     3661 agggttacag ccttcggatt taatcattgt ggcagcccgt ccttcaatgg ggaaaactac
     3721 ttttgcaatg aacttatgtg aaaatgcctc attagtggat attgaagata aagatgattt
     3781 agacgaacag ggtaatccga agaaaaaacc ggcaaagcca gtgctaattt tcagcctgga
     3841 gatgccggca gaccaaatta tgatgcgtat gcttgcctca ctttctcggg tcgatcaaac
     3901 caagatccga accggtcaga tttcagatga tgaagacact gctaaaatct ccagcacaat
     3961 ggcaatttta caagaacgta ataatatcta tattgatgat agctccggtt taacaccgac
     4021 cgaattacgt tctcgagcga gacggattta tcgtgaaaat ggcggattaa gcttgattat
     4081 ggtggactat ctccaattaa tgcgagcgcc gggatttgca gataatcgta ctttagaaat
     4141 cgcagaaatt tcccgttctt taaaggcact agcgaaagaa ttagaagtgc cagtagtcgc
     4201 tctttctcag ctaaaccgga gtttggaaca acgtgccgat aaacgtccgg taaactcgga
     4261 tttgcgtgag tcaggttcta ttgagcaaga tgcagactta attatgttta tttatcgtga
     4321 tgaggtctat aacgacaatt ccgatctgaa aggcattgcg gaaattatta tcggaaaaca
     4381 acgtaacggc ccgattggtc gggtgcgttt aacgttccaa gggcagtatt cccgttttga
     4441 taattacaca ggagggcatt atgatgatga atactaaacc aacccagcca atcacacttt
     4501 gtgcgattta tcgcagtaag gcaaaagaag gaatgtattt atatgtgcct aagcgtgacc
     4561 aatttgagca agtgccggaa acattacgcc agttatttgg taagcctgaa tttgtgatga
     4621 tgtttaattt aaccggtgaa aagccattgg tgcgtgctaa aaacgaagaa gtgttacaat
     4681 tacttataga gcaaggctac tatttgcaaa tgccacctcc gccggagaat ttgcataaag
     4741 cctttatcgc acaacagaaa ggggaaaaat aatgcgctgc ccattttgtt ccactgaaga
     4801 aactaaagtg atcgattcac ggcttgcagc aagcggttat caaattcgcc gccgccgtga
     4861 atgtataagc tgtaaagaac gttttactac ctttgaatcg gccgaattag ttgtgcctta
     4921 tgtgatcaaa aataatggta gccgagagcc gtttgatgcc gaaaaattaa gaacagggtt
     4981 aagacgtgca ttaaataaac gccctgtcag tgctgatgat gtcgaaaaag caattagcca
     5041 aatcattatt cagctgcaag cgatgggcga acgagaagtg ccgagtcgcc atatcggtac
     5101 attggcaatg aacgcactta aacaattaga caaagtagca tatatccgct ttgcctctat
     5161 ttatttaagc tttagtgata ttgaagagtt cattaaagaa attgaaaaat taaaagagta
     5221 gttgcaaaaa aacataaaaa aatgaccgct tgtgagttta aaatccacaa gcggtcattt
     5281 ttctttaaaa atactcaatt agcttttact tgttccaaca caaaccctac aaacgcccgc
     5341 acaatgctag acggataacg atgggcggca taaatcatcg tcaaatcaaa tttggggttt
     5401 tctgtctcac ccaagacttc caccaagcca ttttctgcca ccaatctatc caccgtgctg
     5461 tcggcaagca gagccactgc tttttgccat atattcaatg gcatagctgt cattgctgga
     5521 aaaaagatag ggaatttcta ccgcttgtct gccagtgcct agcgtgatga cgcttgcttc
     5581 attttttgcc caagcggcaa tggggaaatt tttcaaatct ttgacggtgc tgggcgtgcc
     5641 aaagcgtgcc aaaaatttag ggtgtgccac ccatttactg ccgatttgcc ccactttttt
     5701 ggcgataaac tgttcgccgt gtagttgccc aatccgaaac gccacatcaa tgccatctgc
     5761 cgacaaatcc aaaagacggt cggtcagcgt gcaatgcact tgtacttgtg gataagctgc
     5821 ctgaaaatca gctatccacg ccaaaacagg ctcgcaggca gggcttgccg acaggcgtaa
     5881 tttacccttt aaattgcctt gctcttcaaa caacacttct ttggcagtgg caagctgttc
     5941 aatggacaaa tgcacctgtt catacaggcg ttgccctgcc attgtgggtt taacgcctga
     6001 tttttggcgg tcaaagagtt gaatgttaag ctctttttcc aaatcggcaa tttgacggct
     6061 aatggttgca atcggcacat tgagtcgctc ggaggctttg gagagactgc cgtgctggat
     6121 aacggcgaca aagaggcgga gggtgttgag gttcattgtt tttctcccca atgttcaatt
     6181 tcttgaataa aatgtttaat actgccttgg acttgttgat ttttaccata tagataataa
     6241 acgcctgaaa gttcttgtaa aaatttactt tctttataag cgtgtttttc acccaacaca
     6301 gtccaaacta actttaactt atgctctttt aaaaaatcca aaaattt
//
LOCUS       DANLRW010000121         6318 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.122, whole genome shotgun sequence.
ACCESSION   DANLRW010000121 DANLRW010000000
VERSION     DANLRW010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6318
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.122"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            109..1335
                     /locus_tag="PXA71_002180"
     CDS             109..1335
                     /locus_tag="PXA71_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HDL5106252.1"
                     /translation="MAMPSQRFSLTWVLNLFGTAVGAGVLFLPINAGMGGFYPLIIMT
                     LLVGPMTYLAHRGLTRFVLSSKYKGSDITAVVREHFGEQAGKLITLLYFFAIFPILLI
                     YGVGITNTVSSFMENQLHIAPPSRAVLSFMLIAAMIGVMLLSEQVMLKITTCLVYPLV
                     LILLGLSIYLIPQWNTAALQQMPTTGDFLTTLWLTIPVLVFAFNHSPAISSFALSQQK
                     YYQDDKKAEIESAKVLRSTAFILVLFVMFFVFSCVLTLTPEELAQAKVQNISILSYLA
                     NKFDNPIISYFGPLVAFLAIGSSFFGHYLGAREGLEGLVNQMRKEPIDPSKFRKITAI
                     TFLIILWIVATINPSILGFIESLGGPIIAMILFIMPVYAVYKVPALARFKGEFGHLFV
                     LVMGCIAISAIVYGLL"
     gene            1392..2768
                     /locus_tag="PXA71_002181"
     CDS             1392..2768
                     /locus_tag="PXA71_002181"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HDL5106253.1"
                     /translation="MISVFDMFKVGIGPSSSHTAGPMKAAKEFVDELQNRKFLNKIDR
                     LRVDVYGSLSLTGRGHNTDIAIIMGLMGYLPHNVDIERIEQTIENLKQNKQLIIAESS
                     VEPKVIAFDFYEDMPFHRDFLPRHENGVKFSALSGEELLFQNTYYSIGGGFIVDEANF
                     EQVKNSDLSVPFPYQNAADLLAHCKNNGLPLSSLVWKNELALRSRVEISDYLAMIWNT
                     MEACIERGLNTEGLLPGPLKVVRRASGLRRMLEANSKFNTDPMQIIDWVNMFALAVNE
                     ENAAGGRVVTAPTNGACGIVPAVLAYYQKFIAQLNQDTIERYLLTTSVIGSLYKMNAS
                     ISGAEVGCQGEVGVACSMAAAGLTEIMGGSAEQVCMAAEIAMEHNLGLTCDPVGGQVQ
                     VPCIERNAIASVKAINASRMALRRTSSPQVSLDKVIETMYETGKDMNAKYRETSTGGL
                     AIKILPCD"
     gene            complement(2823..4412)
                     /gene="purH"
                     /locus_tag="PXA71_002182"
     CDS             complement(2823..4412)
                     /gene="purH"
                     /locus_tag="PXA71_002182"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005821463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDL5106254.1"
                     /translation="MAIQQALLSVSDKKGIVEFARGLSARGVKLLSTGGTAKLLAEAG
                     LLVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGTDDEVMNQHGIERIDMVVVNLY
                     PFAQTVANPNCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVNNNDFDAILAEMDQHQ
                     NSLTLETRFNLAIKAFEHTAQYDSMIANYFGQKVPPYQGAEEEDLTQPSGQFPRTLNL
                     NFVRKQTMRYGENSHQNAAFYVENELKEASVSTAKQLQGKALSYNNIADTDAALECVK
                     EFSEPACVIVKHANPCGVALGKNILDAYNRAYQTDPTSAFGGIIAFNRELDGETAQTI
                     ADRQFVEVIIAPTVSASAKEVLATKKNVRVLECGEFSEAVKRLDFKRVNGGLLVQDAD
                     QGSVSIDDLKVVSERKPTEAELKDLLFCWKVAKYVKSNAIVYAKDGQTIGIGAGQMSR
                     VYSAKIAGIKAEDEGLQVVGCVMASDAFFPFRDGIDAAAKVGITCVIHPGGSMRDQEV
                     IDAANEHGMAVVLTGMRHFRH"
     gene            4584..4853
                     /locus_tag="PXA71_002183"
     CDS             4584..4853
                     /locus_tag="PXA71_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005601284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDL5106255.1"
                     /translation="MINHNLADFVFEYFTENNLKAGTLRYRYIKENVIDAYSTRVDDA
                     FQGKGIAGELYNALIAFAQEKGLKIKPSCSYIEVKMQRSHRDLIA"
     gene            complement(4940..6316)
                     /gene="dacB"
                     /locus_tag="PXA71_002184"
     CDS             complement(4940..6316)
                     /gene="dacB"
                     /locus_tag="PXA71_002184"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HDL5106256.1"
                     /translation="MTQAEINTEELLNTLPAGTSVSFIAKNLDTNQIITQYQSDIFML
                     PASTQKVFTALAAKLTLNDDFRFQTALLTNGKVENGVLKGNLIARFSGDPELTSGQIY
                     QLMSKLKQQGINKIEGDLILDPSVFASHDKASGWIWNDLTMCFNAPPAAINVDHNCFY
                     VTLNADQPIGEFAKVNVPSAYPVQVFSSAYIVEPKEAPFCQLDVVVHDNNRYQIKGCM
                     ARQSQPFGLSFSVQDPTNYGANMLKAQLKSLKIAFNGQVKEPLTAQNGTLLAEHYSEP
                     LPVLLKKMMKKSDNQIADALFRTVANKQHNRPASFQLGSYVIRQLLKTKANIDFKNSV
                     VADGSGLSRHNQVSSRTMLETLEYIAQNEESLKLFETFPIAGVDGTISGRGSISTEPL
                     AKNLIAKTGSLKGVYNLAGFMKNARGERIAFVQFINGYSTGELESKTKRAPLNTFENK
                     FYMALFNE"
BASE COUNT         1745 a         1246 c         1352 g         1975 t
ORIGIN      
        1 ttctgctttt aatagtttga tcaaaaaata cgtaaaatct tgttgtgtta ctgtttccca
       61 tcgctaatat agcatagctt gttagataat tctttaaagg agattactat ggctatgcca
      121 tctcaacgtt tttctcttac ttgggtacta aatttatttg gtactgcggt aggagccggc
      181 gttttatttt tgccaattaa tgcaggtatg ggtgggttct acccacttat tattatgact
      241 ttgttagttg gaccaatgac atatttagct caccgtggct taacacgttt tgtgctttct
      301 tcaaaataca aagggagcga tattacggct gttgttcgtg aacattttgg tgaacaggcc
      361 ggtaaattga tcacgctact gtacttcttt gccatttttc cgattttact gatttatggt
      421 gtaggtatta ccaataccgt gagttctttt atggagaatc agcttcatat cgcgccacca
      481 tctagggctg tattatcgtt tatgctaata gctgctatga tcggagtaat gttattaagt
      541 gagcaagtca tgttaaaaat cacaacttgt cttgtgtatc cattagtgtt gattttattg
      601 ggcttatcta tttatttaat tccacagtgg aatacagctg ccttacagca aatgccaact
      661 acaggagact tccttactac actttggctg actattcctg ttttagtctt tgcttttaac
      721 cattcaccgg ctatttcttc ttttgcactt tctcaacaga aatattacca agatgacaag
      781 aaggctgaaa ttgaatcagc taaagtatta cgttctaccg cctttatctt ggtgttattt
      841 gtgatgttct ttgtatttag ctgtgtatta actttgacac ctgaagaatt agcacaagct
      901 aaagtgcaaa atatttcgat tctttcttac cttgcgaata aatttgataa tccgattatt
      961 tcctattttg gaccgttggt tgcttttttg gcgattggta gctctttctt tgggcattat
     1021 ttaggtgcgc gcgaggggtt agaaggattg gttaatcaaa tgcgtaaaga gccgattgat
     1081 ccaagcaaat tccgcaaaat taccgctatt acttttttga tcattttatg gattgttgcg
     1141 actatcaatc caagcatttt aggcttcatt gaaagccttg gtgggccgat tattgcgatg
     1201 atcttgttta ttatgcctgt ctatgccgta tataaagtac cggcacttgc acgttttaaa
     1261 ggtgaatttg gccatttatt tgtgcttgtt atgggttgta ttgctatttc agcaatagta
     1321 tatgggttac tgtaatcttt ctaaaatcaa tgtagaatac gcccttttat tttctatgtg
     1381 aatttgtgtt tatgattagt gtatttgata tgtttaaagt agggattggg ccttccagtt
     1441 cccatactgc ggggccgatg aaagcggcaa aggaatttgt cgatgaatta caaaatcgca
     1501 aatttttaaa caaaattgac cgcttgcggg tagatgtcta tggttcatta tcactcaccg
     1561 ggcgaggaca taatacggat attgccatca taatgggatt aatggggtat ttgcctcata
     1621 atgtggatat tgaacgtatt gagcagacga ttgaaaatct aaaacaaaat aagcaactta
     1681 tcattgctga aagcagtgtt gagcctaaag tgattgcgtt cgatttttat gaggatatgc
     1741 catttcatcg agatttctta cctcggcacg aaaatggtgt gaaatttagt gccttgagcg
     1801 gtgaagagtt gctatttcaa aacacctatt attctattgg tggtggcttt attgttgatg
     1861 aagctaactt tgagcaagtt aaaaattcag atctttctgt tccattccca tatcagaatg
     1921 cagcagattt acttgcacat tgtaagaata acgggttacc gctttcttct ttagtctgga
     1981 aaaatgagct tgctttacgc agtagagtag aaatttcgga ttatttggca atgatttgga
     2041 atacaatgga agcctgtatt gagcgtggtt tgaatacgga agggttacta cccgggcctc
     2101 tgaaagtggt acgccgtgcc agtgggctac gcagaatgtt agaggcaaac agtaaattca
     2161 ataccgaccc aatgcaaatt atcgattggg tgaatatgtt tgcccttgcc gtgaatgaag
     2221 aaaatgcggc aggtgggcga gtagtcaccg cacctaccaa tggagcctgt ggtattgttc
     2281 cggctgtgtt ggcgtactac caaaaattta ttgcacagct taatcaagat actattgagc
     2341 gttatttatt gactaccagt gtgattggtt cgttatacaa aatgaatgcc tctatttccg
     2401 gtgctgaagt aggttgccaa ggggaagttg gtgttgcttg ttcaatggcg gcagcaggtt
     2461 taacggaaat tatgggtggc agtgctgaac aggtgtgtat ggctgcagaa attgcaatgg
     2521 agcacaattt aggcctaact tgtgaccctg ttggcggaca agtgcaagtg ccttgtattg
     2581 aaagaaatgc aatcgcttca gtcaaagcga ttaatgccag cagaatggca ctacgccgta
     2641 cttcttcgcc tcaggtaagt ttagataaag tcattgaaac aatgtacgaa accggcaaag
     2701 atatgaatgc aaaataccgt gaaacctcaa ccggtggctt agcaatcaaa attttacctt
     2761 gtgattaatt aatgaaaaag gctaccttat caaaataagg tagcctttta gtttgtagaa
     2821 cattaatgac ggaaatgcct cattccggtt agtaccactg ccataccgtg ttcgttggcg
     2881 gcatcaatca cttcttgatc acgcattgaa ccacctgggt gaatcacaca agtaatccct
     2941 acttttgcag cagcgtcaat accatcacgg aacgggaaga acgcatcgga agccattaca
     3001 caacccacaa cttgtaagcc ctcgtcttcc gctttaatac ctgcaatttt tgcggaataa
     3061 acacggctca tctgccctgc accgataccg atagtttgcc cgtctttggc atacacaatc
     3121 gcattcgatt tcacatattt cgccactttc cagcagaaca ataggtcttt tagctcagct
     3181 tcagttggtt tacgctctga aaccaccttt aaatcgtcaa tagatacaga gccttggtcg
     3241 gcatcttgca ctaataatcc gccgtttacc cgtttgaaat ctaagcgttt tacagcttct
     3301 gagaactcgc cacattcaag cacacgcacg tttttcttag tggctaacac ttctttggca
     3361 gaagcagaaa cggttggtgc aataatcact tcaacaaatt gacggtctgc gatggtttga
     3421 gcagtttcgc cgtctaattc acggttaaag gcaataatgc caccgaaagc agaagttgga
     3481 tcggtttggt aagcacggtt gtaggcatct aaaatatttt tacccaaagc aacaccacaa
     3541 gggttagcgt gttttacaat cacacaagca ggctcgctaa attctttcac gcattcaaga
     3601 gccgcatcgg tatctgcaat attattatac gaaagggctt taccttgtaa ctgtttggcg
     3661 gtggaaacag aggcttcttt taactcattt tcgacataga atgcagcgtt ttgatgcgaa
     3721 ttttcgccat aacgcatcgt ttgtttacgc acaaaattga ggtttaaggt gcgagggaat
     3781 tgtccacttg gttgggttaa atcttcttcc tcagcccctt gataaggcgg cactttttgc
     3841 ccgaaatagt tggcaatcat tgaatcgtat tgtgcggtat gctcaaacgc tttaatagca
     3901 agattaaaac gggtttctaa agttaaactg ttttgatgtt gatccatttc ggcaagaata
     3961 gcatcaaaat cattgttatt gaccacaatc gccacatctt tatgattttt cgctgcagaa
     4021 cgcaccattg tcggaccacc gatatcaata ttttccaccg catcttcaag gctacaattt
     4081 ggattggcaa cggtttgagc aaaagggtag aggtttacta ccaccatatc aattcgttca
     4141 atgccgtgtt ggttcatcac ttcatcatca gtaccacggc gacctagaat tccgccgtgc
     4201 actttcgggt gcagggtttt tacacgcccg tccatcattt caggaaagcc ggtgtaatct
     4261 gatacttctg ttactagcaa accggcttca gccagtaatt ttgcggttcc gcccgtagaa
     4321 agtaatttta ccccacgagc cgatagccca cgagcaaatt cgacaatgcc ttttttatca
     4381 gacacactta ataacgcctg ttgaatcgcc attcttaaat tccttaaaat gagtgttaac
     4441 gtgaaaataa acggcaaaga ttataacgca aacgtttgct tttttcatct acaagtggtc
     4501 gattttgcaa atttttctgc aaaatcgacc gcttgcactc gtgattaaag cgggtagaat
     4561 agaggaaaaa aatcggagga actatgatta accacaattt agcagatttc gtatttgagt
     4621 attttaccga aaacaaccta aaagcaggca cactacgtta tcgctacata aaagagaacg
     4681 tgattgatgc ttacagtacc cgagtagatg atgcctttca aggtaaaggt attgcaggag
     4741 agctttacaa tgctttaatt gcgtttgcgc aagaaaaagg gctgaaaatc aagccaagtt
     4801 gtagttatat tgaggtaaaa atgcaacgaa gtcatcgaga tttaattgct tagagaggag
     4861 caagcggtcg taaaatttca aaaatttacg accgctgtct tattcaattc tcaaaaatcc
     4921 atcacacaaa atataagccc tattcattaa acaacgccat ataaaactta ttttcaaatg
     4981 tattaagcgg agcccgtttg gttttgcttt cgagctcgcc ggtggaatag ccgttaataa
     5041 attgcacaaa agcgatgcgt tcgccacggg cgtttttcat aaagccggca aggttgtaaa
     5101 cccctttcag tgagccggtt ttggcaatca gatttttggc aagcggttct gttgaaatag
     5161 agcctctgcc ggaaatagta ccgtccacgc ctgcaatcgg gaaggtttca aacagtttta
     5221 agctttcttc gttttgagcg atatattcaa gggtctccag cattgttcgg ctgctgactt
     5281 gattatgacg ggaaagccct gagccatcag ccaccacgct gtttttaaaa tcaatattgg
     5341 ctttggtttt taataactgg cgaatcacat aactacctaa ttggaacgat gcggggcggt
     5401 tgtgttgctt gttggcaacg gttctaaaca gggcatcggc aatttggtta tccgattttt
     5461 tcatcatttt tttcaataat accggcaacg gctcggaata atgctcggca agtagcgtgc
     5521 cgttttgggc agtaagtggc tcttttactt gcccgttaaa ggcaattttc aggcttttta
     5581 actgggcttt aagcatattt gccccgtaat tagttgggtc ttgcaccgaa aaacttaagc
     5641 cgaacggttg agactggcga gccatacagc ctttgatttg gtagcggttg ttatcgtgaa
     5701 ccaccacatc aagctggcaa aacggagctt ctttcggctc gacaatataa gcagagctaa
     5761 acacctgcac cggataagcg gacggcacat tcactttagc aaattcgcca atgggttggt
     5821 cggcatttaa ggtgacataa aaacagttgt gatccacatt aattgccgcc ggtggggcgt
     5881 taaagcacat cgtcaagtcg ttccaaatcc aaccggaggc tttgtcgtgg ctggcgaaaa
     5941 ccgacgggtc tagaattaaa tccccctcaa ttttattgat accttgttgc tttaatttgc
     6001 tcattaattg ataaatttga ccgcttgtaa gctcagggtc gccactaaaa cgggcaatta
     6061 aattgccttt taacactccg ttttctactt ttccgttggt taaaagggca gtttgaaagc
     6121 ggaaatcatc gtttaaagtt aattttgctg ccagtgccgt aaagactttt tgggtactgg
     6181 caggtagcat aaaaatatca ctttggtatt gggtgatgat ttggttagtg tctaaatttt
     6241 tagcaataaa actaacagaa gtaccggcag gcaaggtatt taataattct tcggtattaa
     6301 tttcagcctg tgtaatgc
//
LOCUS       DANLRW010000122         6090 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.123, whole genome shotgun sequence.
ACCESSION   DANLRW010000122 DANLRW010000000
VERSION     DANLRW010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6090
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.123"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..651)
                     /locus_tag="PXA71_002185"
     CDS             complement(<1..651)
                     /locus_tag="PXA71_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDL5106257.1"
                     /translation="MAEILFRSCLCCNAKRIFYLLTFYKGFETSQIATAFSLLVFTSQ
                     AFSLFAGSWGDSFGRYPIMMLGCLLDALAYILLLTTKNYPLLLLATFFFGLGSTLFST
                     NARAFLLANIQDTGDSYQLKTKAQGKFLKVSSLSAMVAPLLTIPFIFYRKAEWLIWIS
                     CCIEIIMLFVMFKTAPKTHECANGQCERFKFGALKGILNEQFIFVHLLLFIPLGLGS"
     gene            734..1195
                     /locus_tag="PXA71_002186"
     CDS             734..1195
                     /locus_tag="PXA71_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL5106258.1"
                     /translation="MRKIKLLHVILSLILGLSAAAIGSYPAIKEIGEERAKKHQDILD
                     LNRELYSAMVNRDFSALQTLLSDDFELYSSTGEVIDKQEWIKLIQKRVLEFDKVDLLS
                     TDFQGNQSSGLLRVNGEFFGIERDNVVVEMNIRTIVRNTERQIKCIVIKEV"
     gene            1208..2101
                     /gene="murQ"
                     /locus_tag="PXA71_002187"
     CDS             1208..2101
                     /gene="murQ"
                     /locus_tag="PXA71_002187"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HDL5106259.1"
                     /translation="MNALGQMITEQRNPNSMNIDRLSALDIVQVINQEDKQVAIAVEQ
                     CLPQIAQAVEKIVQAFEKGGRLVYVGAGTSGRLGVLDASECPPTYGVKPEMVVGLIAG
                     GERALRFPIEGAEDNREQGKVDLQAVNFSEKDVLVGIAASGRTPYVLGAMEYAKQLGA
                     TTVSIASNPNSAMAQIADIAIETVVGPEVLTGSSRMKSGTAQKLVLNMLTTASMILIG
                     KCYQNLMVDVQATNEKLKARAIRIVMQATECEREVAEDTLKLAENNAKLAIMMILGNL
                     DKQKAEDLLSQNQGRLQKALK"
     gene            complement(2185..3129)
                     /gene="prmB"
                     /locus_tag="PXA71_002188"
     CDS             complement(2185..3129)
                     /gene="prmB"
                     /locus_tag="PXA71_002188"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDL5106260.1"
                     /translation="MFKYNTELLDEISALPIVNDLVTIQDMMRWGYSYFNASDLYYGH
                     GYDNAWDEAQQLVLAGLYLPFDVPETLYSSRLTRVEKERIINLICERLGSRKPVAYLT
                     NSAWFCGGEYYVDERVIVPRSPIGELIKKGFKGIIKNEPHRILDMCTGSGCIAIACAE
                     RFPEAEVDAVDLSLDALDVAQINIERHQVSHRVFPICSDLFNNLPQDKYDLIVTNPPY
                     VDEEDLGDMPEEFHHEPALALGSGKDGLDLTKRILAQAADYLNDDGVLVCEVGNSMVH
                     LIEQFPSVPFNWLEFEHGGLGVFSLTKEELVKHRHLFA"
     gene            3222..3767
                     /gene="smrB"
                     /locus_tag="PXA71_002189"
     CDS             3222..3767
                     /gene="smrB"
                     /locus_tag="PXA71_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HDL5106261.1"
                     /translation="MNDTLLDDEFALFREAAKGTKKLTQNTFVPKAEPRKKLQELREL
                     KEKADTEFYFSDEYEPLLKEENEKVKYLREDVDPYILKQLRRGDFQPELFLDLHGLTR
                     EKAKKELAALILACEREKVYCASVMTGFGTRTLKDQIPRWLVQHPKVMALHQAPKEWG
                     GDASILILVEQPENPEKMFGR"
     gene            3831..4316
                     /locus_tag="PXA71_002190"
     CDS             3831..4316
                     /locus_tag="PXA71_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaK/prolyl-tRNA synthetase associated
                     domain-containing protein"
                     /protein_id="HDL5106262.1"
                     /translation="MSEQTFHQLTALLDSHRARYRVVGHPSAGKSEEVAKIRGTEIGQ
                     GAKALVCKVKGNGVKQAVLAILPADYQADLTKIAEHLGGLRASLASPAEVAELTDCVF
                     GAIPPFSFHPDLLLVAEPSLFERYAELAFNAGTLERSIILNTEDYQKIVNPVLVQFAK
                     S"
     gene            complement(4318..5067)
                     /locus_tag="PXA71_002191"
     CDS             complement(4318..5067)
                     /locus_tag="PXA71_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDL5106263.1"
                     /translation="MEKRFEINEQGLSIRCKLFYEKELQQIENVVIVLHGFGSSKDLK
                     SNTKFGERLSSKYKGYAALAFDFPCHGDDARKKLSVEESITYLQLVIDYAKTSLNAKN
                     LYAYGTSFGGYLTLKYLAEKGNPFRKIALRAPAVQIYHSLMNRLSEEERQKLAKGREI
                     LWGFDRQMKISQAFFDELTDITQNDYLDYAEQILILHGTEDEMVALSTSQQFADNNVI
                     ELLPIEGADHAFSNPKLMDIAIGKIVEFFAP"
     gene            5239..>6090
                     /locus_tag="PXA71_002192"
     CDS             5239..>6090
                     /locus_tag="PXA71_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA/RhaT family transporter"
                     /protein_id="HDL5106264.1"
                     /translation="MLQLILAILCSVTVGVLIKFARQKGIRIDQSIAVNYIVTTTMTF
                     LLLKPDYQGQSITDIIANNPTSYIFVILSITLPTIFLVQAKALEFAGIIRTDAAQRLS
                     LFLPILAAFTIFGEQVTQNKLIALLLAFVALGCLLWKGNQGMEKGGKIAIISLALVWV
                     GYGVNDILFKQIAKSGSAFPVTLSIAFIGAGCFMFIYLLLKRTQWHVPSVLTGLLLGV
                     LNFGNILFYIQAHQAMKDDPTLVFTGMNLGVICLGTFVGAFFFKEKIHKVNYLGVAIA
                     IVAIICLF"
BASE COUNT         1872 a         1148 c         1359 g         1711 t
ORIGIN      
        1 acttcctaga ccaagcggaa taaaaagtaa taaatgtaca aaaataaatt gttcatttag
       61 tattcctttt aatgcaccaa atttaaagcg ttcgcattgc ccatttgcac attcatgtgt
      121 tttgggtgcg gttttaaaca taacgaatag cataataatt tcaatgcagc agctaatcca
      181 aataagccat tctgctttac ggtagaaaat aaatggaata gtaagtaatg gtgctaccat
      241 cgctgacagg cttgatacct tcagaaattt accttgagcc ttagttttga gttggtaact
      301 atctccggta tcttgaatat tggctaataa gaatgctctc gcattggtac taaataaggt
      361 gctaccgagc ccgaagaaaa aggtagcaag taatagcaga gggtaatttt ttgttgtcag
      421 taataaaatg taagctaggg catcgagcaa acagccaagc atcatgatag ggtaacgtcc
      481 aaaactatca ccccaagaac ctgcaaaaag ggaaaatgct tggctggtaa agaccaacaa
      541 agaaaatgca gttgcaattt ggctggtttc aaagcctttg tagaatgtaa gtagataaaa
      601 aatacgcttt gcattgcagc ataagcaaga ccggaaaaga atttccgcca taaaatgata
      661 ttttggatat tcatagataa tatttaatga gaaaaatgat ttctaatata actaaattta
      721 ataaggaagc acaatgagaa aaatcaaatt attgcatgtt attttatctt taatattagg
      781 gctttctgcg gcagcgattg gaagttatcc ggcaataaaa gagattggcg aggagcgggc
      841 aaaaaaacat caagatatat tagatttaaa tagagaactt tatagtgcaa tggtgaaccg
      901 tgatttttcg gctttgcaaa cattactaag cgatgatttt gagctttatt catcaacagg
      961 tgaagtgatt gataagcaag aatggatcaa attaatccaa aagagagtat tggaatttga
     1021 taaggttgat ttgctatcta ccgattttca ggggaatcaa tcatctggat tattaagagt
     1081 aaatggtgag ttttttggga tagagcggga taatgtggtg gtagaaatga atattcgaac
     1141 cattgtgaga aatacagaac gccaaattaa atgtattgtg attaaagagg tttaagtgtc
     1201 gcaactattg aatgccttag ggcagatgat taccgaacaa cgtaatccga attcgatgaa
     1261 tattgaccgc ctttcagcgt tagatatagt ccaagtcatc aaccaagaag acaaacaagt
     1321 agcgattgcg gtggagcagt gcctgcctca aattgcacaa gcggtggaaa aaattgtgca
     1381 agcctttgag aaaggtggac gattggttta tgtcggtgcc ggcacgagcg gaagattagg
     1441 ggtgcttgat gcttcggaat gtccgcccac ttatggcgta aaacctgaaa tggtggttgg
     1501 attaattgcc ggtggtgagc gggcattacg tttcccgatt gaaggggcgg aagataatcg
     1561 tgagcaaggc aaagtagatt tacaagcggt caattttagc gaaaaagatg tattggtcgg
     1621 gattgcagcc agtgggcgaa cgccttatgt gttaggggcg atggaatatg ctaagcaact
     1681 tggtgcgacc acggtgtcga ttgccagtaa cccaaattcg gcaatggcac aaattgcgga
     1741 tattgcgatt gaaaccgttg tcgggccgga agtgctaacc ggttccagcc gtatgaaatc
     1801 cggcacagct caaaaattgg tattgaatat gctcactact gcgtcgatga ttttaatcgg
     1861 taaatgctac caaaatttaa tggtagatgt gcaagcaact aatgaaaaac tcaaagctag
     1921 agcaattcgg attgtgatgc aagcgacaga atgtgaacga gaagtggctg aagatacact
     1981 aaaattagcc gaaaataacg ctaaattggc aattatgatg attttaggta acttagataa
     2041 gcagaaagcc gaagatttat taagccaaaa tcaagggcga ttacaaaaag cgttaaaata
     2101 gaagtatgtc tgctctcccc ttgtgggaga gagacagatc aatcattcat tcagaatgat
     2161 tgatcagaga gaggggaggc agatttaagc aaataaatgg cgatgtttca ctagttcttc
     2221 tttggttaaa ctgaacaccc ctaagccacc gtgttcaaat tccagccagt taaacggcac
     2281 actggggaat tgttcgatta aatgcaccat actgttgccg acttcgcaga ctagcacgcc
     2341 atcatcattt aagtaatcag cggcttgagc aagaatccgc ttggttaaat ctaacccatc
     2401 tttgcccgag ccaagagcta atgccggctc gtgatggaac tcttcgggca tatcgcctaa
     2461 gtcttcttca tcaacataag gcggattagt cacaattaag tcgtatttat cttgcggtaa
     2521 attgttaaac agatcggaac agatcgggaa aactcggtga gacacctgat gacgctcaat
     2581 attaatttga gcaacgtcta aggcatcaag ggaaagatca accgcatcga cttctgcttc
     2641 cggaaaacgc tcggcacagg caatcgcaat acaaccgctg ccggtacaca tatctaaaat
     2701 tcgatgtggc tcgtttttga taatgccttt aaaccctttt ttgatcagct caccaatcgg
     2761 tgaacgtggc acgatcacac gctcatcgac ataatattca ccgccacaaa accaagccga
     2821 gttggtaagg tatgctacag gtttgcgaga gcctaaacgc tcacagatta aattgatgat
     2881 acgttctttc tcaactcgag ttaagcgaga ggaataaagt gtttccggta catcaaacgg
     2941 caaataaagc cctgccaaca ctaattgttg tgcctcgtcc cacgcattat cgtagccgtg
     3001 cccgtaataa agatcagagg cattaaaata gctatacccc caacgcatca tatcttgaat
     3061 agtgactaaa tcattcacaa tgggcagggc ggaaatttca tcaagaagtt cggtattata
     3121 tttaaacatt ggcgtgcctt ttttcgtatt gttaaaatgg ctgtgttata ccacattttg
     3181 ctttgtgtta gaatgtaaaa atgaataaga aggaaaagat aatgaacgat acgttattag
     3241 acgatgaatt tgcattattc agagaggcag caaaaggcac gaaaaagctg acacaaaata
     3301 cctttgtgcc gaaagcggaa cctcgcaaga aattgcaaga attgcgagaa ttaaaagaaa
     3361 aagctgatac agaattttat ttctcggatg aatatgagcc tttgctgaaa gaagaaaatg
     3421 aaaaagtgaa atatctgcga gaagatgttg atccttatat tctcaaacag ttacggcgag
     3481 gcgatttcca acccgagctg tttttagatc tgcatggttt aactcgagaa aaagcgaaga
     3541 aagagttggc agcgttgatt ttagcctgtg agcgggaaaa ggtatattgt gccagtgtga
     3601 tgaccggctt tggcactcgc acgctcaaag atcaaattcc acgctggttg gttcagcacc
     3661 caaaagtaat ggcgttgcac caggccccga aagagtgggg cggagatgcc tctattctaa
     3721 ttttggttga gcagcctgaa aatcctgaaa aaatgtttgg gcgttaaaat tcggctgaat
     3781 tgccaatttt ttattaaaaa cgaccgcttg tgtatcatta aggagaaatg atgtcagaac
     3841 aaactttcca ccaacttaca gcattattag attcgcatcg agctcgctat cgagtggtag
     3901 gacatccttc tgccgggaaa tcggaagaag tggcaaaaat tcgaggaaca gaaatcgggc
     3961 aaggggcgaa agccttagtt tgcaaggtaa aaggcaatgg ggtaaagcaa gctgtgcttg
     4021 ctatattacc tgctgattac caagcggatt taacaaaaat tgcagagcat cttggtgggt
     4081 taagagcctc acttgccagc ccggctgaag tggcagaatt gaccgattgt gtatttgggg
     4141 caattccgcc gtttagcttt caccccgatt tattattggt ggctgagcca agtctgtttg
     4201 agcgttatgc tgaattagcc tttaatgccg gtacgttgga acgttcgatt attctgaata
     4261 ccgaggatta ccaaaagata gttaatcctg tgttggttca attcgccaaa agctaggtta
     4321 tggggcgaaa aactccacga ttttgccaat agcgatatcc attaatttag ggttagaaaa
     4381 agcgtgatct gccccttcaa tcgggagcag ttcaatcacg ttattatcgg caaactgctg
     4441 tgaagtgctt aacgccacca tttcatcttc cgtgccgtgc agaattaaaa tttgctcggc
     4501 ataatccaaa taatcgtttt gggtaatatc ggttagctca tcaaaaaagg cttggctgat
     4561 tttcatctgg cgatcaaacc cccacaaaat ttctcgccct ttggcaagtt tttgccgttc
     4621 ctcttctgac aagcggttca ttaacgaatg gtagatttgt actgccggtg cccgcaatgc
     4681 aattttccga aacggattgc ctttttccgc cagatatttc aaggttaaat agccgccaaa
     4741 actagtgccg taggcataca gatttttagc attcaggctg gttttggcat aatcaatcac
     4801 cagttgcaga taagtaatgg attcctcaac cgagagtttt ttacgggcat catcaccgtg
     4861 gcaagggaaa tcaaaggcaa gggcagcgta gcctttatat tttgagctaa ggcgttcccc
     4921 aaatttggta ttcgatttca gatctttaga cgaaccaaag ccgtgcaaca caatcactac
     4981 attctcgatc tgctgcaatt ctttttcata aaacagttta cagcgaatgc tgagaccctg
     5041 ttcattaatc tcaaagcgtt tttccatttt atgttaagta ttgaaattga agatgacaaa
     5101 attttagcac tatttgagtg caagcggtcg gatctctcgc aaaatttgca aattttccgg
     5161 taaatttaac cgcttgtact agccaaaatt taagcatatt tatagaatac agccttcgtt
     5221 tttaaaagga gaaatgaaat gttacaactt attttagcga ttttatgtag cgtgactgta
     5281 ggcgtgttga ttaaattcgc ccgccaaaaa gggattcgta tcgaccaaag tattgcggtg
     5341 aactatatcg tgactaccac gatgacgttt ttattactaa aaccggatta ccaagggcag
     5401 tcgattaccg atattattgc taataacccg acttcctata tttttgtgat tttaagtatc
     5461 acattgccta ctattttctt ggtgcaagca aaagccctag agtttgccgg tattatccga
     5521 accgatgcgg cacaacgttt atcgctgttc ctgccgattt tggcggcatt caccattttt
     5581 ggtgagcagg ttacgcaaaa taaattaatt gcacttctgt tagctttcgt ggcactcggt
     5641 tgcttattat ggaaaggcaa tcagggaatg gaaaaaggcg gaaaaattgc gattatcagc
     5701 cttgctctgg tttgggtagg ctatggcgtg aacgatattt tatttaaaca gattgccaaa
     5761 tcaggctctg ctttccctgt caccctttcg attgccttta tcggtgcagg ctgttttatg
     5821 tttatctatt tgctacttaa acgcactcaa tggcacgttc caagtgtctt aaccggctta
     5881 ttgctaggcg tgttgaactt cggcaatatt ctgttctata ttcaagctca ccaagccatg
     5941 aaagatgacc caactttagt cttcactgga atgaacttag gggtaatttg cttaggcact
     6001 ttcgttggag cattcttctt taaagagaaa atccacaaag tgaactactt aggcgtggcg
     6061 attgcgattg tggcgattat ttgcttgttt
//
LOCUS       DANLRW010000123         6047 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.124, whole genome shotgun sequence.
ACCESSION   DANLRW010000123 DANLRW010000000
VERSION     DANLRW010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 6047)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6047)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6047
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.124"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(132..1418)
                     /gene="purD"
                     /locus_tag="PXA71_002193"
     CDS             complement(132..1418)
                     /gene="purD"
                     /locus_tag="PXA71_002193"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012771675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDL5106265.1"
                     /translation="MNILIIGNGGREHALAWKVRQSPLADKVFVAPGNAGTAMENGIE
                     NVAISATDVPALVTFAKQNSVGLTIVGPEAPLVVGVVDAFRAHGLTIFGPTQAAAQLE
                     GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLKQKGAPIVIKADGLAAGKGVIVAMT
                     LQEAEDAVRDMLSGNAFGEAGSRVVIEEFLDGEEASFIVMVDGKNVEPMATSQDHKRV
                     GEGDSGLNTGGMGAYSPAPVVTKAIHQRVMDEIIYPTVQGMASENTPYTGFLYAGLMI
                     MPNGQPKVIEFNCRFGDPETQPIMMRLESDLVELCLKACEGKLDSVQSKWCEQAALGI
                     VLAAAGYPGDYRKGDEIIGIPTSTSNQKVFLAGVEQKEGKLLTNGGRVLCATALGNSV
                     FEAQQQALQLAEQIQWQGKFYRRDIGYRAVARKQAK"
     gene            1652..2026
                     /gene="rpsF"
                     /locus_tag="PXA71_002194"
     CDS             1652..2026
                     /gene="rpsF"
                     /locus_tag="PXA71_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011199651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDL5106266.1"
                     /translation="MRHYEIVFMVHPDQSEQVPAMIERYTASVKEAGGQVHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQSVIDELETNFRYNDAVLRNLIVHTKAAVTEASPM
                     VKAKESKVAEAVAEVESEEAGE"
     gene            2001..2375
                     /gene="priB"
                     /locus_tag="PXA71_002195"
     CDS             2001..2375
                     /gene="priB"
                     /locus_tag="PXA71_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HDL5106267.1"
                     /translation="MNQRKQASNLPIDNCLILSGTVSSLVKQSLNPLGVPHYSFWLEH
                     RSIQTEVNLERQAWCKIQVVLAGNQFSYLTQQIKLGESVRIKGFIHTHKDFNGLNQLV
                     LHTEQIEFIDQEKPNGTLFPSS"
     gene            2350..2577
                     /gene="rpsR"
                     /locus_tag="PXA71_002196"
     CDS             2350..2577
                     /gene="rpsR"
                     /locus_tag="PXA71_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDL5106268.1"
                     /translation="MARYFRRRKFCRFTAENVVEIDYKDIATLKNYISESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLALLPYTDNHQ"
     gene            2593..3042
                     /gene="rplI"
                     /locus_tag="PXA71_002197"
     CDS             2593..3042
                     /gene="rplI"
                     /locus_tag="PXA71_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011609589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDL5106269.1"
                     /translation="MQVILLDKVAHLGSVGDQVTVKSGFARNFLIPQGKAVMATAANI
                     AHFEARRAELEAKAAAALATAQERAAKIAALAAVSVSATAGDDGRLFGSVSAKDIAEA
                     LTAAGVGVAKSEVRLGEGPLRTTGEHQVKIHLHPEVNATVAVNVVAE"
     gene            complement(3106..3882)
                     /gene="dnaQ"
                     /locus_tag="PXA71_002198"
     CDS             complement(3106..3882)
                     /gene="dnaQ"
                     /locus_tag="PXA71_002198"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HDL5106270.1"
                     /translation="MTEEKIIRQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRR
                     LTGRTYHVYIKPPREVDEEAIAVHGITNEFLQDKPVFAEIAEEFLDFIKGAELIIHNA
                     PFDVAFMDQEFSYLPNPPAKTAEMCTVTDSLQMARRMYPGKRNNLDALCDRLGIDNSK
                     RVLHGALLDAEILADVFLMMTGGQISLLGEEETEVVSEVIDIEEEFSAIVLNADEAII
                     LKANDEEEESHLALLKLIEKKSKGNCLWTKALTDTAEISH"
     gene            complement(3970..5640)
                     /gene="ettA"
                     /locus_tag="PXA71_002199"
     CDS             complement(3970..5640)
                     /gene="ettA"
                     /locus_tag="PXA71_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HDL5106271.1"
                     /translation="MSTQFVYTMHRVGKVVPPKRHILKDISLSFFPGAKIGVLGLNGA
                     GKSTLLRIMAGVDKEFEGEARPQPGIKIGYLPQEPKLAPQQTVREAVEEAVAEVKNAL
                     TQLDEVYAMYADENADFDKLAAKQAELEAIIQAHDGHNLQNQLERAADALRLPDWDAK
                     IEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDYEGTVVAITH
                     DRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKEKRLAQEQAAESARQKSIEKELEW
                     VRQNPKGRQAKSKARMARFEELNSGEYQKRNETNELFIPPGPRLGDKVIEVQNLTKSY
                     GDRTLIDDLSFAIPKGAIVGIIGANGAGKSTLFRMLSGKEQPDSGSIVLGETVVMASV
                     DQFRDAMDDKKTVWEEVSNGQDILTIGNFEIPSRAYVGRFNFKGVDQQKRVGELSGGE
                     RGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENAILEFPGCAMVISHDRWFLDRI
                     ATHILDYGDEGKVTFYEGNFSDYEEWKKKTFGEAATQPHRVKYKRIAK"
BASE COUNT         1595 a         1386 c         1283 g         1783 t
ORIGIN      
        1 tttagaaaag agtttactgc atcgtttaat gatagtgatt taatttcggg gcctgcatcg
       61 agttcagtga tattaatttc attaagtgtt gtactcataa taaatttttc cttgttttaa
      121 gagtttataa attatttcgc ttgttttctt gccactgctc ggtagccaat atctcggcga
      181 tagaatttgc cttgccattg aatttgttcg gcaagttgta aggcttgttg ttgagcttca
      241 aatacactgt tgccaagtgc ggtggcacaa agtacacgtc caccgttggt gagcagtttt
      301 ccttcttttt gctcaacccc tgctaagaaa actttttgat tggaggtaga ggtcggaatg
      361 cctatgattt catcgccttt acggtaatcg cccgggtagc ctgcggcagc taaaacaatg
      421 cctaatgcgg cttgttcaca ccattttgat tgcacgctat ccaatttgcc ttcgcacgct
      481 tttaagcaca attcaacgag gtctgattcc aaacgcatca taatcggctg agtttcaggg
      541 tctccaaaac ggcagttaaa ttcaatcact ttcggctgac cgtttggcat aatcattaag
      601 ccggcataga gaaaaccggt gtaaggggta ttttcgcttg ccattccttg cacggtcggg
      661 taaataattt cgtccattac acgttggtgg attgcctttg ttaccaccgg agcaggggag
      721 taagccccca ttccgccggt atttaagccg ctatcgccct cgccaacacg tttgtggtct
      781 tgtgaggttg ccattggttc gacatttttg ccgtccacca tcacaataaa actggcctct
      841 tctccgtcta aaaattcctc gatcaccaca cggctgccgg cttcaccaaa ggcgttgcct
      901 gacagcatat cacgcactgc atcttccgcc tcttgtaaag tcattgcaac aattacgcct
      961 ttgcctgcgg ctaaaccgtc tgctttgatt acaatcggtg cacctttttg ttttaagtag
     1021 gcaagtgccg gttcaatttc ggtgaaattt tggtattctg cggttggaat ctgatggcga
     1081 gccaagaaat ctttggtaaa tgctttagaa ccttctaatt gagcagcggc ttgggtcggg
     1141 ccgaaaatgg ttaaaccgtg ggctcgaaaa gcatcaacca cgccaactac taacggtgct
     1201 tcagggccga caatcgtcaa acctacgcta ttttgtttag cgaatgtaac taaggcaggc
     1261 acgtcagtgg cggaaatagc tacattttca atgccgtttt ccatcgctgt gccggcattg
     1321 ccgggggcga caaagacttt gtctgcgagc ggcgattgac gaactttcca agcaagagcg
     1381 tgttcacgcc caccgttgcc gataattaaa atattcattg ggattccttg caaaaatgat
     1441 aaagcaaacg tttgcgtatt gtacttgatt tgtttatctg ctgacaagca gtcgtttttc
     1501 tcggattttt tgcaaaatac gaaattgttg cttgcaaaat aggctttttt cagtataatc
     1561 ctgccgttca gtcacattcg ttttttaatc cttgcttcca caagttggtg actggctaaa
     1621 gttggaggct gctaacccgt aaggatagtc aatgcgtcac tacgaaatcg tttttatggt
     1681 tcacccggac caaagcgaac aagtaccagc aatgattgag cgctacacag cgtctgtaaa
     1741 agaagctggc ggtcaagttc atcgcttaga agattggggt cgtcgtcaat tagcataccc
     1801 aatcaacaaa cttcacaaag cacactatgt gttaatgaat gtagaagcac ctcaaagtgt
     1861 aatcgacgag ttagaaacta acttccgtta taacgatgca gttcttcgta acttaatcgt
     1921 tcacactaaa gcggcagtaa ctgaagcgtc accaatggtg aaagcgaaag aaagcaaagt
     1981 tgctgaagcg gtagctgaag ttgaatcaga ggaagcaggc gagtaatttg ccgattgata
     2041 attgtttaat cttaagcgga acggtttcca gcttggttaa acaaagccta aacccccttg
     2101 gtgtgcctca ttacagtttt tggttagaac atcgttcaat ccaaaccgaa gtgaatttag
     2161 aacgccaagc gtggtgcaaa atccaagtgg ttttggcagg caatcaattt agttatttaa
     2221 cccaacaaat taagctcggt gagagcgtga gaattaaagg ttttatccat actcacaaag
     2281 actttaacgg tttaaatcag ttagtcttac acaccgaaca aattgaattt atagatcagg
     2341 agaagccaaa tggcacgtta tttccgtcgt cgtaagttct gccgtttcac agcggaaaat
     2401 gttgttgaaa tcgattacaa agatatcgct acattaaaga actacatttc tgaaagcggc
     2461 aagattgttc ctagccgtat tactggtact cgtgcgaagt atcaacgtca attagctcgt
     2521 gcaattaaac gcgctcgcta ccttgcgtta cttccatata ctgataacca ccaataatca
     2581 ggagagagta caatgcaagt tattttatta gacaaagttg ctcacttagg ttctgtgggc
     2641 gaccaagtaa ccgttaaatc tggttttgct cgtaacttct taatcccaca aggtaaagcg
     2701 gttatggcaa ctgcggcaaa cattgctcac tttgaagcac gtcgtgcaga attagaagca
     2761 aaagctgcag cagcattagc aactgcacaa gaacgtgcag cgaaaattgc agcattagca
     2821 gcagtatcag tatctgcaac tgcaggtgat gatggtcgtt tattcggttc tgtatcagct
     2881 aaagacatcg ctgaagcatt aactgcagca ggtgttggag ttgctaaatc tgaagttcgt
     2941 ttaggtgaag gtccacttcg tacaaccggc gaacaccaag ttaaaattca cttacaccct
     3001 gaagtgaatg caactgtagc agtaaacgtt gttgctgaat aatcagtaga aatagaaaac
     3061 ccagcgaaag ctgggttttt tgtttgcttt atttattggt tagaatcagt gagatatttc
     3121 tgctgtgtcg gttaatgctt ttgtccatag gcaatttcct ttggattttt tctcaatcag
     3181 tttcagaagt gctaaatgcg actcttcctc ttcatcgttt gctttaagaa taattgcctc
     3241 atcggcattt aacacaattg cagaaaattc ttcttcaata tcaataactt cacttaccac
     3301 ttcagtttct tcttcgccta ataatgaaat ctgaccgccg gtcatcatta ggaatacatc
     3361 agctaagatc tccgcatcca gtaacgcccc gtgtagtaca cgcttgctat tatcaatgcc
     3421 gagcctgtcg caaagtgcat ctaaattatt ccgtttgccg gggtacattc ttcgtgccat
     3481 ttgcaggcta tcggttacgg tacacatttc tgcggttttt gccggtggat taggcagata
     3541 agaaaattct tgatccataa acgccacatc gaagggggca ttgtgaataa ttaattccgc
     3601 acctttgatg aaatccaaaa actcctcggc aatttcagca aaaacaggtt tatcttgcaa
     3661 aaattcattg gtgatgccgt gaactgcaat cgcctcttca tctacctcac gcggtggctt
     3721 gatataaacg tgataagttc tgccggttaa acggcggtta atgacttcaa ccgcaccgat
     3781 ctcaataata ttatgcccaa tctgtggcgg gccacctgcc atattcattc ctgtggtttc
     3841 agtatccagc actacttggc ggataatttt ttcttctgtc atattcaatt taaaattgta
     3901 ggggtgaaat atttttatcc cttaattctg catttgatta ggggcgaaac atatttcgcc
     3961 cctacattgt tacttcgcaa tccgtttata tttcactcgg tgcggttggg tggcggcttc
     4021 accgaaggtt ttcttcttcc actcttcata gtcggagaag ttaccctcgt agaacgtcac
     4081 tttgccttca tcgccgtagt ctaaaatatg ggtggcgata cggtctaaga accagcggtc
     4141 gtgcgaaatt accattgcac agcccgggaa ctctaagatc gcattttcca acgcacgcag
     4201 ggtttctacg tctaagtcgt tggtcggctc gtccagtaac aacacgttac cgccacgttg
     4261 tagtagcttc gccaagtgta aacgaccacg ttcaccgcct gaaagctcgc ccacacgttt
     4321 ttgctgatct acgcctttga agttgaaacg ccccacataa gcacggcttg ggatttcaaa
     4381 gttaccaatc gtgagaatat cctgcccgtt cgacacctct tcccacacgg ttttcttatc
     4441 gtccatcgca tcacggaact gatcgaccga tgccattacc accgtttcac caagcacgat
     4501 tgaaccagaa tccggctgtt ctttaccaga aagcatacgg aacaaggttg atttacccgc
     4561 accatttgcc ccgataatcc cgacaatcgc ccccttcgga atagcgaacg acaagtcgtc
     4621 aatcaaagtg cgatcgccgt aagatttagt caggttttgt acctcgatca ctttatcacc
     4681 taagcgtgga cccggtggaa taaagagttc gttagtctcg ttacgttttt gatattcgcc
     4741 tgagttaagc tcttcaaagc gtgccatacg agccttactt ttcgcttggc gaccttttgg
     4801 attttggcgt acccattcca actctttctc aatcgatttt tgacgagccg attccgccgc
     4861 ttgctcttgt gccaagcgtt tttctttctg ctccaaccaa gaagagtagt taccttccca
     4921 aggaatgcct tcaccacggt caagctctaa gatccagccc gcaacgttgt ctaagaagta
     4981 acggtcgtgg gtaattgcca ctacggtgcc ttcgtagtcg tggaggaaac gctccaacca
     5041 cgccaccgat tccgcatcta agtggttggt cggctcatct aacaataaca tatccggttt
     5101 ttccagcaac agacggcaaa gtgccacacg gcggcgttca ccccctgata aatgctcgat
     5161 ttttgcgtcc caatccggca gacgtaacgc atcggcagca cgctctaact ggttttgaag
     5221 gttatggcca tcgtgggctt gaataatcgc ctctaattcc gcctgttttg ccgctaattt
     5281 gtcgaaatcg gcattctcat cagcatacat cgcatagact tcatcaagct gggttaaggc
     5341 gtttttcact tccgcaaccg cttcttccac cgcttcacgc acggtttgct gtggggcaag
     5401 tttcggttct tgtggaagat agccgatttt aattcccggt tgtggacgag cctcgccctc
     5461 gaactcttta tctacgcccg ccataatgcg taaaagcgtt gatttacccg ccccgtttaa
     5521 gccgagcacc ccgattttcg cccccgggaa aaagctcagg gaaatatctt taagaatgtg
     5581 acgcttcggc ggcacgactt tgccgacacg gtgcatcgta tatacaaatt gagttgacat
     5641 tggttgtatt cctcacaaaa aaattcgcct tattttactt gaatttacag ccaaaatata
     5701 gggtggtttt ggcttttggt aaagtaacct tttccaatag agatgttatt tgaggctgca
     5761 tagtactatg catttctctt accttgacag gtaagagaaa caaatcctga aggaaaaaaa
     5821 ttttaaggaa gttattctat gcaatatgta tgtccaaaaa cactcaaatt attcaacagc
     5881 attgttggtt gttataaggg agaagattaa ttctctacct catcaaggct tgattttaga
     5941 tttaatatcc atttctaaag atgatttaga tgatattttg gagggtaata ctgatatgaa
     6001 tattcatcaa ttattaagcc tgatttataa ggctggattt tttgatg
//
LOCUS       DANLRW010000124         5881 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.125, whole genome shotgun sequence.
ACCESSION   DANLRW010000124 DANLRW010000000
VERSION     DANLRW010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5881
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.125"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            102..767
                     /locus_tag="PXA71_002200"
     CDS             102..767
                     /locus_tag="PXA71_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HDL5106272.1"
                     /translation="MNFTTYFSDENKRRSLILLSLFHIFIIAISNYLVQISFEVQVPL
                     TEFSFPTTWGTLTFPFIFLATDLTVRVFGADLARKIIFVVMFPALVISYVISVLFFET
                     QFQGFSALTEFNFFVFRIALASFAAYLVGQLLDVLVFNSLRQGKRWWLAPTCSTIFGT
                     LIDTFVFFAIAFYKSSDEYMAEHWFTIGSVDYAFKLFVSLLLFLPLYGVILNFIMKKL
                     DLK"
     gene            853..1656
                     /gene="map"
                     /locus_tag="PXA71_002201"
     CDS             853..1656
                     /gene="map"
                     /locus_tag="PXA71_002201"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDL5106273.1"
                     /translation="MNNIPLRNEEEIQKLRVACKLASDVLVMIAPYVKEGVTTGELDK
                     ICHEYILANGATSASLGYHGFPKSVCISLNEVVCHGIPSDDKKLKKGDILNIDVTVIK
                     DGYYGDNSMMYVVGEPSVRDKRLMAVTLESLYVGIRTVKAGVRLKEIGTAIQKYVEKE
                     GFSVVREYCGHGIGTEFHCDPQVVHYATDDGGVVLKEGMVFTIEPMVNAGKKEVRLMG
                     DGWTVKTKDRSHSAQYEHQIVVTKDGCEVLTIRDEEIAEGRISRIMHNS"
     gene            complement(1772..3186)
                     /locus_tag="PXA71_002202"
                     /pseudo
     CDS             complement(1772..3186)
                     /locus_tag="PXA71_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605131.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sucrose transporter subunit IIBC"
     gene            complement(3493..4143)
                     /gene="thiQ"
                     /locus_tag="PXA71_002203"
     CDS             complement(3493..4143)
                     /gene="thiQ"
                     /locus_tag="PXA71_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein"
                     /protein_id="HDL5106274.1"
                     /translation="MIELDLHFTYEQMNMHFQLSVKKGERIAVVGESGAGKSTLLNLI
                     AGFEKAESQQSQLWLNQKNHLDTEVAQRPVSMLFQDNNIFPHLTVEQNIGLALVPSLS
                     LNPKQKAQVKQIATQMGIETFLQRQADQLSGGQKQRVALARTLLRDKPILLLDEPFSA
                     LDPQRRAELQQIVFDICQSRNLTLLMVTHQLSESLFLFNRVITVADGEIVSDLSPL"
     gene            complement(4140..5714)
                     /gene="thiP"
                     /locus_tag="PXA71_002204"
     CDS             complement(4140..5714)
                     /gene="thiP"
                     /locus_tag="PXA71_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease"
                     /protein_id="HDL5106275.1"
                     /translation="MLSTLTKTTAWFIYFSIIALYVFSLWALMDYHQNDTLFVFSDIT
                     ATVAYSLLQASLSAVISLFLGSLLARSFFYLDFKGKNLLYKTISFIWALPSLVIIFAV
                     IGVFGNSGWLAKLFQQLGWNWQFNLYGLHGIILAHCLFNIPFVMKYYTGGLQLTPSSR
                     FQLAAQLNLTGWNYIQIVELPIIKTLLPYMFMTVFLVCFTSFPIVLMLGGSPKYSTLE
                     VAIYQAVTFEFDFAKALILIGVQFVVGIGLQLVMNYISTSALKKLKQQPNRVEIWKPK
                     PTGLAKLGLQAVIFLQSFAIILPLVSVIWAGLSVSKLSERLLNPTLWQATQYSLYLSL
                     IASIFVITISYLIALEARQLLYTKAKLRYSILTAITLFPLLLPIFLLSVGLFILLMNS
                     ELSSEALLLLVGICNGLTLLPFIYPMLFSAMWNSLTSHDKLAQGLGLKGLRRWWIVEK
                     NQLIRPLVTVFALAMSSSLGSFTVIAFFGNADFSSLPYLLYQQLGSYRTEDAAVTALI
                     LMLFALLPFLFSKDKL"
BASE COUNT         1799 a         1098 c         1267 g         1717 t
ORIGIN      
        1 tttgaaataa tatgagcttg atttttatgg gaaaatgtat agaataatgc ccccttgagt
       61 tcccttacct caagttttca tttaacgaaa aaggatacaa tatgaacttt actacttatt
      121 tttcggatga gaacaaacgt cgttctctaa ttttactttc acttttccat atttttatca
      181 tcgcaattag caactattta gtgcaaatta gctttgaagt tcaagtacca ctaacagaat
      241 ttagctttcc gacaacttgg ggaacgttaa cattcccatt tattttctta gcgaccgatt
      301 taaccgtgcg tgtatttggt gcagatcttg ctagaaaaat tatttttgtt gtgatgtttc
      361 cggcacttgt cataagctat gtgatttccg ttttattctt tgaaacccaa tttcaaggct
      421 ttagtgcatt aactgagttc aacttttttg ttttccgtat tgcactggct agctttgcag
      481 cttatttagt tgggcaatta ttagacgttc tagtatttaa tagtttaaga caaggtaagc
      541 gttggtggct tgctccaacc tgttcaacca tttttggtac tttaatcgat acttttgtat
      601 tctttgctat cgccttttat aaaagtagcg atgaatatat ggcagagcat tggtttacta
      661 ttggttcggt cgattatgcg tttaaactct ttgtgagcct actgctattt ctaccgcttt
      721 atggtgtgat attaaatttc attatgaaga aacttgattt aaagtagaaa tctaaactga
      781 ggtttgggga ttgtgctgaa aaaaggtata atccccttac tttttatggc agatatagca
      841 gagagcaatg taatgaataa tattccatta agaaacgaag aagaaattca aaaactacga
      901 gtagcctgta aactggcttc agatgtttta gtaatgatcg ccccttatgt gaaagagggc
      961 gtaacaactg gtgaattaga taaaatttgt cacgaataca ttttggcaaa tggggcaact
     1021 tcagccagtt tgggctatca cggcttccca aaatcggtgt gcatttcgtt aaatgaggtc
     1081 gtttgtcacg gtattccaag tgatgacaaa aagctgaaaa aaggcgatat tttaaacatc
     1141 gatgtgacgg ttatcaaaga tggctactat ggcgataact cgatgatgta tgtagtcggt
     1201 gagccaagtg tgcgggataa acgcttaatg gcggttacgc tagagtccct ttatgtcggg
     1261 attcgcaccg tgaaagcggg ggtgcgttta aaagaaattg gtacagcgat tcaaaaatat
     1321 gtggaaaaag aaggcttttc ggtagtacga gaatattgcg gacacggtat tggtactgaa
     1381 ttccattgcg acccacaagt agtgcattat gctaccgatg atggcggtgt agtgttaaaa
     1441 gaaggaatgg tgtttacgat tgagccaatg gtgaatgccg gcaaaaaaga agtccgctta
     1501 atgggtgacg gttggacagt gaaaaccaaa gaccgcagcc actccgcaca atatgagcat
     1561 caaattgtag ttaccaaaga cggctgtgaa gtgctgacaa ttcgtgatga agagattgcc
     1621 gaagggcgta tttctcgaat tatgcacaac agctaatttg caaattttta gcgaaaaatg
     1681 accgcttgcg aaactcattg ttaagctaag gcgtttaaaa acaaaaggga ttaagctaac
     1741 acttaatccc ttttttgtga tctatttttg attatttcgc ttgtgctttt ttcacccaaa
     1801 tggctgaaat ggtaaatgca actacaaatg aaattaccat accgacagaa tacattgcaa
     1861 ggctgtcagg tttaatcgac ggaataccta agaaaccggc tgcacctaag gcaattgctt
     1921 tcacattaaa gaaagcgata aatgcactgg ctaaacctga accgatcatc gccgcaataa
     1981 aggcttggcg gtagcgtaaa tttactccga acattgccgg ttgataccta acagggctga
     2041 aatacctgac ggcacggcta aaccacgcac tttggcatct ttcattgcaa aagctacacc
     2101 taaacaggct gcaccttgtg caatgttaga cattgctgca atcgggaaga taaatgtacc
     2161 gccggtttgt gctacttcag ctaataattg ggtttcaacc gcaataaagg tttggtgcat
     2221 accggtaatc acgattggag cgtagaatgt accgaaaatt gctccaccga taaagcctaa
     2281 gctgtcatat aaccacgtta agcctgctga aatcgctgaa cctgcttcac gacccaatgg
     2341 tccgattaca gtgaaagcta aaataccggc gataaataat gacatcattg gcgtcaccaa
     2401 gttatctaaa tagcttggca caaatttacg gaaagttttc tcaagggttg ctaacaccca
     2461 agccgaaacg atagttggaa taaccgtgcc ttgataaccc actttttcaa tttctaagcc
     2521 gaaaatattc cagtatttga tgttaccttc cattaaggtt ttggcatagt tccaaccgtc
     2581 tgcaagtgcc gggtgaacca ataacatacc aagtgccgca cctaagaatg gattaccgcc
     2641 aaatttgcgt gtagctgaga aaccgagtaa tacaggtaag aatacaaatg gtgcgttagc
     2701 aatagtgttg atgaaatcaa ctaaatcgga aatattcgga taacggctaa caacagattc
     2761 accttcccag aagaaaccga ctgccgttag cattgagtga atacccatta acaaaccgcc
     2821 agccacaata gccggaatga tcggcacgaa aatatcggct aagcctttta ccaaacgttg
     2881 tagtaatggc tgatttgctg caccggcagc cgctacttca gaggtggaca tatctgccat
     2941 acccatttgt ttttgcattt gggcatacac ttcatttacc gtgcctgatc caaaaataat
     3001 ttggtattga ccgggagtag agaattgacc tttcacgcct tcaatatttt caatcgcctc
     3061 tttatcaatt ttggattcat cagcaatggt taagcgtaaa cgggttgcac agtgggcaag
     3121 tgtggtaatg ttttctttgc cacctaattt tgcaatcgtt tgttctgcaa tttttggata
     3181 gttcatttga atttaccttt cataaaaaat aatcggttgc attttaacta aatcggttta
     3241 gctaaaaaag agaagattta aaatatttcc aaatttgtga agtagatcac attttgggga
     3301 agagaatagc ggaataggga ggtaatatta gttacagttc ccctctttgc taaagtaggg
     3361 ggcgagttct gaaaaaaatg aataacgcta gtatccgtgc ggaacatcat tcaccgttag
     3421 attgttggaa ttgacatcgt tgcgtacgcc agcgtggcgt ccctacattt agaacctagc
     3481 agatctgctt tgctaaagag gggagagatc agaaacaatc tccccatctg ctaccgttat
     3541 cacccgatta aatagaaata ggctttcgga tagttggtga gttaccatta acagggttag
     3601 atttctgctt tggcaaatgt caaacacgat ttgctgtaat tcggctcggc gttgcgggtc
     3661 gagggcggag aagggttcgt ccaataataa aatcggctta tcccgcaaca aagtacgagc
     3721 taatgccact cgctgttttt gtccgcccga tagctgatcg gcttgacgct gaaggaaggt
     3781 ttcaatcccc atttgtgtgg caatttgttt aacctgtgct ttttgtttcg gattgagcga
     3841 caaacttggt actaaagcta agccgatgtt ttgttctacc gttaagtgcg ggaaaatatt
     3901 gttatcttgg aatagcattg aaacaggacg ttgtgcaact tcggtatcaa gatgattttt
     3961 ctgatttagc cacagctggc tttgctgact ttctgccttt tcaaaaccgg caattagatt
     4021 aagtaatgtg cttttgcctg cgccactttc gccaaccact gcaatacgtt cgcctttttt
     4081 gacagaaagc tgaaagtgca tattcatttg ttcgtaagtg aaatggagat ccagttcgat
     4141 catagtttat ccttgctgaa taagaatggt agtaacgcaa ataacatcag aatgagtgcg
     4201 gtaacggcag catcttcggt tctatagcta ccaagttgtt ggtagagtaa ataagggagt
     4261 gagctgaaat cagcgttgcc gaaaaaagca atgacggtga aactgcctaa gctcgatgac
     4321 attgctaacg caaatacggt aacaagcggt cgaattagtt gatttttttc cacaatccac
     4381 caacggcgaa gcccctttag cccaagtcct tgtgctaatt tgtcgtgcga ggtgaggcta
     4441 ttccacattg cggagaaaag cattgggtaa ataaatggca gtaatgttaa gccgttgcat
     4501 atcccgacca gtagcagtaa tgcctcgctt gagagttcac tattcattaa taaaataaac
     4561 aaaccaaccg ataataaaaa gatcggcaga agtaagggga atagggtgat tgcggtgaga
     4621 atgctatatc tgagcttggc ttttgtatag agtaattggc gagcttcaag tgcaatcaaa
     4681 tagctgattg tgattacgaa tatagaagca attaaactta agtataaaga atactgagta
     4741 gcttgccata aagtagggtt gagcaaacgc tcactgagtt ttgacacgct tagtcctgcc
     4801 caaatgacgc tgacaagcgg tagaattatt gcaaaacttt gcaaaaaaat aaccgcttgt
     4861 aagccgagtt tagccagtcc ggtaggcttt ggtttccaaa tttctactcg gttaggttgc
     4921 tgttttagct ttttgagtgc agaagtcgag atataattca ttactaattg taagccaatg
     4981 cccactacaa attgtacccc aattaagatg agggcttttg caaaatcaaa ttcaaaagtg
     5041 accgcttgat aaatggcaac ttcaagcgtg ctgtattttg ggctaccgcc taacattaat
     5101 acgattggaa aactggtaaa gcagaccaga aaaacagtca taaacatata aggcagcaaa
     5161 gttttgatta tcggtagttc cacaatttgg atataattcc aacctgttag gtttaattga
     5221 gccgcaagct gaaagcgact gcttggagtc aattgaagcc ctccggtata atatttcatc
     5281 acaaacggaa tgttaaacag gcagtgagcc aaaatgatgc cgtgcaagcc gtataaatta
     5341 aattgccaat tccaaccgag ttgttggaaa agtttggcta gccagcctga gttaccaaat
     5401 acgccaatta ccgcaaaaat aattactagt gagggtaatg cccagataaa cgaaatggtt
     5461 ttatagagta aattttttcc tttaaagtcc aaataaaaga aagatcttgc cagtaggctg
     5521 cctaaaaata gtgaaattac cgcagagagg ctggcttgaa gtaggctata agcgaccgtg
     5581 gccgttatat cggaaaaaac aaataaggta tcattttggt gatagtccat taacgcccat
     5641 agactaaaaa catagagagc aataatacta aagtagataa accatgcggt tgttttggtt
     5701 aatgtgctaa gcatattgct ccaaatttag aatataagtg aaagaagtgg tagcgaaatt
     5761 attgtaacat ttccgcttaa gtgtgtgcta gaatcttgat attcgacaaa tgatttttaa
     5821 gttagcttaa aaaacaccct atttagcagg gtgatacgac gagtttttgc gctttttagc
     5881 g
//
LOCUS       DANLRW010000125         5835 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.126, whole genome shotgun sequence.
ACCESSION   DANLRW010000125 DANLRW010000000
VERSION     DANLRW010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5835
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.126"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..211)
                     /locus_tag="PXA71_002205"
     CDS             complement(<1..211)
                     /locus_tag="PXA71_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106276.1"
                     /translation="MIQNDPRDAIILSLLANAVYGGHNNSQISYQETEEVNLYARLRQ
                     VEGDVREIKSNYLTKEAFYKAGGSTL"
     gene            complement(216..596)
                     /locus_tag="PXA71_002206"
     CDS             complement(216..596)
                     /locus_tag="PXA71_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106277.1"
                     /translation="MNNKRIKPEQFADFITQRTGRNLTCPICNSQEHYLHDGYDTFTE
                     LCGEKIIGVPTIPYRIEPSPDEVMKFAAPEFHSLHFNEREGTKYWLDQKARTAVIVTC
                     VCCNNMLFFDRERILEWIKGSQNE"
     gene            complement(647..1306)
                     /locus_tag="PXA71_002207"
     CDS             complement(647..1306)
                     /locus_tag="PXA71_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HDL5106278.1"
                     /translation="MTTLGSRIKAYREQLGISQYEVAERCTSIDNRDKNNKWGQSRIA
                     NYERNNRTPDLDDIEILSKVLGVSPETLAFDTNVQLARPTKSNSYPLISNIQAGLWTE
                     AFDFKDSEGYDYIDTEIDAGPDAFFLRISGMSMEPKFSEGDLVLIDIRKRPHPGDYVA
                     AVNGTGEATLKRYRELGEWSESGNPHFELIPLNPDFPTLSSMKQDIRIIGVAVEHRSY
                     L"
     gene            1436..1642
                     /locus_tag="PXA71_002208"
     CDS             1436..1642
                     /locus_tag="PXA71_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005656653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5106279.1"
                     /translation="MNKIAEIRNQIGISQAQLAVQIGWGQPRIANYETGNRTPSIYVA
                     QKIVEGLNELGANVRIDDVFPVGN"
     gene            1663..1923
                     /locus_tag="PXA71_002209"
     CDS             1663..1923
                     /locus_tag="PXA71_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106280.1"
                     /translation="MPRNELTKNARAIADLIHRKSATVTHKKLARAIGLSESQFSRTF
                     ADNVEMVAVIIDYLSIELADKDELLELKEKRYKRINLEEATT"
     gene            2087..2257
                     /locus_tag="PXA71_002210"
     CDS             2087..2257
                     /locus_tag="PXA71_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106281.1"
                     /translation="MKNQRNDTQKSSLWQEFEYRKRLKNLIESGLSVAEIETRSQQIY
                     EELKSECTTEAN"
     gene            2232..3101
                     /locus_tag="PXA71_002211"
     CDS             2232..3101
                     /locus_tag="PXA71_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HDL5106282.1"
                     /translation="MNAQPKQINPILKLHPKQSEAKKVSVDDGYTQIPNELLKAILRS
                     GVLGWKGSYLLATVLKTLSWHKESDWFTHSQVCEMMNIEPTKYHINQLSAARKELIRE
                     NILFEDGKETGVNLSVFEWKMVYPEKVGSSRNNRELIPEKVGNGYPEKVGNTKETITK
                     EKINNEFTNVNSVQQPETSLPKKTKSEPVDYQGVMEEFNRAVEDTPIPQIRAMSDERK
                     RSVHALAKILRKEFGGYTRQHFADYFNDFVRQASSRKDRFYFGGLDGSAWVANFGYII
                     RSKTFYKTWEDSL"
     gene            3098..4459
                     /locus_tag="PXA71_002212"
     CDS             3098..4459
                     /locus_tag="PXA71_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase"
                     /protein_id="HDL5106283.1"
                     /translation="MSQNLKNITYEVEYLLVGALLKSGLNSKARDVLSWLEPEMFATF
                     QLGVIYEAIRKQALKDNVIDMLLLNTDYGQDFATLAEIMKNTISGANLDGYAEKVRQY
                     HQRREAQRVFLDVAGELQNARDEQLDAITSTGLAHLSKLLQRGGKVKPIDMNDLLEGY
                     LELFQERAKPSFKERLLFTGIEALDGKLGGINDTDICIVAGRAGNGKTETAITFTKNI
                     IENKGSVLFFSLEMSKEQIMDRLIASASGVNSVKLRNPEMMNDEDFARMGTAIQPLQN
                     QQLYIVDKSGLTAEEIVAIAESHIQEYGKVSAVVIDYIGLVRHGKLDGKINRTYQIGE
                     SMERFKTFCKNNHTPMILLAQLNRNADGSRPTNADLRDSGSLEQDASQIIMVHNQRNK
                     DGEPAPYTEWIVTKNRFGANGTVYMQFQQGRFVECDQAEAREYFQPKETKTSSNKRYG
                     AMQ"
     gene            4456..4992
                     /locus_tag="PXA71_002213"
     CDS             4456..4992
                     /locus_tag="PXA71_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HDL5106284.1"
                     /translation="MTDFDKNIKYKIIYADPPWKYKDSGCNGSAENHYTTMNIKEICD
                     LPVQDISDKDSILFLWVTYPMLPEGLKLIEAWGFNYKTIGFQWVKTNKKNKNSFFFGL
                     GRWTRGNTECCLIATKGKPSRVSNKVSQLIIEPIQHHSKKPDIVREKIVELMGDLPRI
                     ELFARNKTQGWDVWGDEV"
     gene            5083..5298
                     /locus_tag="PXA71_002214"
     CDS             5083..5298
                     /locus_tag="PXA71_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106285.1"
                     /translation="MITYKCPKCNGELEDLSINDEWGWFLDEPYRCNGHYTGRFPNIS
                     RDSTLNRTKSCGYFSKEEVKKVNGTQR"
     gene            5282..5788
                     /locus_tag="PXA71_002215"
     CDS             5282..5788
                     /locus_tag="PXA71_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HDL5106286.1"
                     /translation="MAHSVNDIVKAHGRRYKARLKIQMIKMQGGVLVPLNEREAEALV
                     SLKNGEQYEIEVIRTRNPAFHRKVFAFLNFCFEYWSADKTEWEFFDERKQFDTFRKNL
                     TVLAGFKEITYTLDGRMRVEAQSLSYGNMEQDEFEQVYKALINAAIKHVFNNTKDENR
                     INQLYSFF"
BASE COUNT         1906 a         1040 c         1273 g         1616 t
ORIGIN      
        1 tgagtgtaga gccaccagct ttataaaaag cctctttcgt caaataattt gacttgattt
       61 ctcttacatc gccttcaact tgtcttaatc gagcatataa attcacttct tccgtctcct
      121 gataactaat ttgtgaatta ttatgcccgc cgtatactgc atttgcaagt aaggatagta
      181 tgattgcatc tctaggatca ttttgaatca ttggtctatt cattttgtga gcccttaatc
      241 cattctaaaa ttctctctct gtcgaaaaaa agcatattat tacagcaaac acaagtgaca
      301 ataacggctg ttctcgcttt ttggtctaac caatattttg ttccttcccg ttcattgaaa
      361 tgcaaagaat gaaattcagg agctgcaaat ttcataactt catcaggaga tggctctatt
      421 cggtatggaa tggttggaac accgataatt ttctctccgc ataattccgt aaaagtgtca
      481 tagccatcgt gtaaataatg ttcttggcta ttacaaatag ggcaagttaa attccgccca
      541 gtacgttgcg tgataaaatc cgcaaactgt tcaggtttaa tgcgtttatt attcatttta
      601 acttcctttc tacccaataa aattcaactg ttagctttgg tggactttac aaatagcttc
      661 tatgctcaac agcgacacca ataatacgaa tatcttgttt cattgagctg agtgttggaa
      721 agtcggggtt aagcggtatt agctcaaaat gaggattgcc ggattcagac cattcgccta
      781 actcccgata acgttttaaa gtagcctcac ctgtgccatt aaccgctgct acataatcgc
      841 ccgggtgagg acgtttgcga atatcgatta acaccagatc gccttcacta aatttaggct
      901 ccatcgacat tccggaaatt cttaaaaaga aagcgtccgg tccggcatca atttccgtat
      961 cgatatagtc gtagccctcc gaatctttga aatcaaaggc ttctgtccat aaacccgctt
     1021 gtatattgct gatcaacgga tatgagttcg attttgtcgg tctggcaagc tgaacgtttg
     1081 tatcaaaagc aagtgtttct ggagaaacac caagcacttt gctgagtatt tcaatatcat
     1141 caagatcggg agtacgattg tttctctcat aattagcaat gcgagattgc ccccatttgt
     1201 tatttttatc tcgattatct attgatgtac atctttcagc aacttcatat tggctgattc
     1261 ctagctgttc tctgtaagcc ttaattctac tacctaaggt tgtcatagca ctctcctatt
     1321 agattttcct cattttaaca cgctccgtta tatccttgtg aatcacaaaa tgaaatttac
     1381 aattagttca ttttgtgatt taattaaaag atataaatca caaagagaaa tttgtatgaa
     1441 taagatagct gaaatacgaa accaaattgg tataagtcaa gctcagttag ctgttcagat
     1501 tggttggggg caaccaagaa tagctaacta tgaaactgga aatcgtaccc catctattta
     1561 cgttgctcaa aaaattgttg agggattgaa cgaattaggt gcaaacgtac gaattgatga
     1621 cgttttcccc gttggcaact aatttacccc aagaggcttg caatgccacg caatgaatta
     1681 acaaaaaatg caagagcgat tgcggatttg attcatcgaa aatccgcaac ggtgacgcat
     1741 aagaaactag caagagcaat cggactgagt gaatcacaat ttagccgtac atttgcagat
     1801 aatgtggaaa tggtggcggt gattattgat tacttaagta ttgagcttgc ggataaagac
     1861 gagttactag agctgaaaga gaaacgatat aagcgaataa atctcgaaga agcgacaaca
     1921 tagaagttac caacaatgaa aaatttttta gaaaaattca aatcattcta ccacagtaaa
     1981 aattcaattt ttattagagt ggcaattttt atgctgcttg cgtggtgggt ttttaacaat
     2041 taaaaaacca ccgctggaac ggtggtaatt tacaaggagt taccttttga aaaatcaacg
     2101 caatgataca caaaaaagct ccttatggca agagtttgaa tatcgaaaac ggttaaaaaa
     2161 tctcattgaa agcggtttat ccgtagccga aattgaaacc cgttcacaac aaatttatga
     2221 ggagctgaaa agtgaatgca caaccgaagc aaattaaccc aattttaaaa ttgcacccta
     2281 aacaatcaga ggctaagaaa gtgagtgttg atgatggtta tacacaaatt ccgaatgagt
     2341 tattaaaagc aattttgcga tcgggtgttt taggttggaa aggctcttac ttactggcta
     2401 ccgtcttaaa aacattgtct tggcataaag aaagtgattg gttcacgcat tcccaagtgt
     2461 gtgaaatgat gaatattgag ccgacaaaat accatattaa tcaactttcc gctgctcgaa
     2521 aagaacttat ccgtgaaaat atcttgtttg aagatggtaa ggaaacaggg gtaaatctca
     2581 gtgtttttga atggaaaatg gtatatcccg aaaaagtagg gagttcccga aataataggg
     2641 aattaattcc cgaaaaagta gggaatgggt atcccgaaaa agtagggaac acaaaagaaa
     2701 ctattacaaa agaaaaaata aataatgaat ttactaacgt aaattctgtg caacagcccg
     2761 agacctcttt gccgaaaaaa acaaaatctg agccggtcga ttatcaagga gtgatggaag
     2821 aatttaatcg tgctgtggaa gacacaccga ttccgcaaat tcgggcgatg agtgatgagc
     2881 gaaagcgatc ggttcacgca ttagcaaaaa tcttgcgaaa agaatttggt ggctacacca
     2941 gacaacactt tgccgattac ttcaatgatt ttgtccgaca ggcaagtagc cggaaagaca
     3001 gattttattt tggcgggctt gatggctcgg cttgggtagc aaatttcggc tacatcattc
     3061 gttcgaaaac gttttataag acttgggaag attcgctatg agccaaaatt tgaaaaatat
     3121 cacttacgag gttgaatatt tgctggttgg agcattgctg aaatccggtc ttaactcgaa
     3181 agctagggac gtattgagct ggttagagcc tgaaatgttc gctacctttc aacttggggt
     3241 gatttatgag gctatccgca agcaggcgtt gaaagataac gtgatcgata tgctgttact
     3301 caataccgac tacggacaag attttgccac gttggcagag ataatgaaaa acacgatcag
     3361 cggtgcaaac ttagacggct atgcagaaaa agtccggcaa tatcatcaac gccgagaagc
     3421 ccagcgagtg tttttagacg ttgcaggtga gttgcaaaat gcccgagacg agcagttaga
     3481 tgctatcact tcaaccgggt tagctcacct aagcaaatta ttacaacgtg gcggaaaagt
     3541 gaaaccgatt gatatgaatg atttgctcga aggttatttg gaattgttcc aagaacgtgc
     3601 aaaaccaagt tttaaagagc gtttgttgtt taccggtata gaagcattag atgggaaact
     3661 aggcggtatt aacgataccg atatttgcat tgtagcagga cgtgccggta acggtaaaac
     3721 cgaaacagcc atcacgttta ctaaaaacat tatcgagaat aaaggttcgg tgctgttctt
     3781 ctcgctggag atgagcaaag agcagattat ggataggctg attgccagtg caagcggtgt
     3841 aaattcagta aaacttcgca atccggaaat gatgaatgat gaagattttg cccgaatggg
     3901 aacggcgatt cagcctttac aaaatcagca gttgtacatt gttgataaaa gcggattaac
     3961 cgcagaagag attgtggcga ttgcagagag ccatattcaa gagtacggca aagtgagtgc
     4021 ggtagtgatt gattatatcg gtttggttcg acacggcaaa ctagacggca aaattaaccg
     4081 aacctatcaa atcggtgaaa gtatggagcg gtttaaaact ttctgcaaaa acaatcacac
     4141 accgatgatt ttattggcac agcttaaccg caatgcagat ggcagtcgcc caaccaacgc
     4201 agatttgcga gacagtggca gtcttgaaca agatgcaagc caaatcatta tggtgcataa
     4261 ccaacgcaac aaagacggcg agccagcccc ctatacagaa tggattgtta ctaaaaatcg
     4321 ctttggagca aatggcacgg tttatatgca attccagcag ggtaggttcg tagaatgcga
     4381 ccaggcagaa gcgcgggagt atttccagcc gaaagaaact aaaacatcat caaacaaacg
     4441 ctatggagca atgcaatgac agattttgat aaaaatataa aatacaaaat tatttacgca
     4501 gatccgcctt ggaagtataa ggatagtggc tgtaatggga gtgcagaaaa ccattacaca
     4561 acaatgaata tcaaagaaat atgtgattta cccgtccaag atatttcaga caaagattct
     4621 attctgtttt tgtgggttac ttaccctatg ttacctgagg gcttaaagtt gattgaggcg
     4681 tgggggttca actataaaac aatagggttt caatgggtga agacaaataa gaagaataag
     4741 aattcttttt tctttggctt gggacgatgg actagaggta ataccgaatg ctgtttaatt
     4801 gcaacaaaag gaaagccatc gagggtaagc aataaagtga gccaattaat tattgagcca
     4861 atacaacatc atagtaaaaa gcctgacatt gtcagagaaa agatagttga gttgatgggt
     4921 gacttgccaa gaatagagtt gttcgccaga aataaaaccc aaggttggga tgtttggggg
     4981 gatgaggtgt gattgtttca agctattgtt acccaaagtg cggtagggtt ttattaaaaa
     5041 ggttggcggt tgtgaaggat aacgaaggtt gggacggttt agatgattac ttataaatgc
     5101 cccaaatgca acggagagct tgaagattta agtattaatg atgaatgggg ttggttttta
     5161 gatgagccgt atcgttgcaa cggacactat acagggcggt ttccaaacat tagccgagat
     5221 agcacgttaa atcgcacaaa atcctgtggg tactttagca aggaagaggt taagaaagta
     5281 aatggcacac agcgttaatg acatcgtaaa agcccacggc aggcgttata aagcaagatt
     5341 gaaaatacag atgataaaaa tgcaaggagg cgttttagtc ccccttaatg agcgtgaagc
     5401 tgaagcattg gtatcactta aaaatggcga gcaatatgaa attgaggtta ttcgcactcg
     5461 caatccagcc tttcatcgga aggtcttcgc ctttttaaat ttttgctttg aatattggtc
     5521 ggcagacaaa accgaatggg agttttttga tgagaggaaa cagtttgata ctttccgaaa
     5581 aaatctgact gttctggcag gatttaaaga aatcacatac accctagatg ggcgtatgcg
     5641 tgtagaagct caaagtctta gttacggaaa tatggaacaa gacgagttcg agcaggttta
     5701 caaagcattg attaatgcag ctatcaagca cgttttcaac aataccaaag atgagaatag
     5761 gataaatcag ttgtattcgt ttttttaatt aaggcgaaat cgccatattt aattaggttt
     5821 aattgcagga gatta
//
LOCUS       DANLRW010000126         5798 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.127, whole genome shotgun sequence.
ACCESSION   DANLRW010000126 DANLRW010000000
VERSION     DANLRW010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5798
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.127"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            34..1116
                     /gene="serC"
                     /locus_tag="PXA71_002216"
     CDS             34..1116
                     /gene="serC"
                     /locus_tag="PXA71_002216"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HDL5106287.1"
                     /translation="MTEIYNFSAGPAMMPKKVLEKAQQELLNWLDQGTSVMEVSHRGK
                     LFMELAAQSEADLRKLYNVPDNYRILFLQGGARGQFAAIPMNLIGKKGKALYLNSGHW
                     SATAAKEARNFAEIDEINILETEPQLKVSRLDFSDIAEQYDYIHYCTNETISGVEIFD
                     IPNVGNTPLVADMSSNILARGIDINKFGVIYAGAQKNLGPAGITIVIIRDDLIGNARK
                     DTPSIWNYATQRDADSMINTPPTFAWYLCSLVFQHLLAEGGLKATEERNLAKATLLYE
                     YLDSSTFYYNTVAHENRSLMNVTFTTGNDELNAKFVAEATACGLQALKGHKVLGGMRA
                     SIYNAMPIDGVKALIEFMKVFEQRNA"
     gene            complement(1173..2150)
                     /locus_tag="PXA71_002217"
     CDS             complement(1173..2150)
                     /locus_tag="PXA71_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HDL5106288.1"
                     /translation="MTLAVAAIIGGLIILVWSADRFVEGAASTARHFGMTPLLIGIVV
                     IGFGTSAPEMLVSASSALSGSPGIALGNAYGSNITNIALILGLTAIIKPLSVNSDVLK
                     KELPILLAVTLLSAYLVYDANVTQLDAIILLAVFFVYMAWTIITAMKSKNDALSLDVD
                     AELTNSAKMGLGKSILWLIIGLVSLVISSQFLVWGAVEVAKFFGVSDLVIGLTIVAVG
                     TSLPELASSIAAARKGEVDLALGNIIGSNLFNTLAVVGIAGAIEPMQVSAEVFSRDVL
                     MMSALTFLLFIFGINLYRRTEGGRINRLEGLLLFAAYVGYNFYLFKTAG"
     gene            2262..4829
                     /gene="glnD"
                     /locus_tag="PXA71_002218"
     CDS             2262..4829
                     /gene="glnD"
                     /locus_tag="PXA71_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HDL5106289.1"
                     /translation="MMKNSNELKTLLSAFTEQQRQAFQSENVLSLLAQRSQFYDQLLQ
                     ALWQDFGLAQYEHITLLAVGGYGREEMFPLSDLDILVLTEKPLEEAIQQRLNELFALL
                     WDSKLQLGTSVRTLEECIQIGKAEISVATNMLEGRFLLGNKSLWLRLKEALYQPDFWD
                     IKAFFRAKMAEKNERYARYHNTSYNLEPDLKHSPGGLRDLHLISWIMLRHYGVSSFVD
                     LLNKGLLYPEEYKELIAAQAVLFRMRFALHLQLKRYDNRLRFDRQLQLSEILGYQGEA
                     NQAVELMMRDYFQATKSISQLSQLLLNSFEQAYVNELQKNAQKQPLDQYFYRQEQQLF
                     VVERKIFKTQPTTMLDLFFHLTNDPTLIANADTLRQLRLCLQQQHEPMCFLPEMREKF
                     VQLFAQPKVISRAIVPMHQLGFLSAYLPQWKGIEGLMQFDLFHIYTVDEHTVRVMLNL
                     ENFSEDPSRAFFPLCHQLFATLSEKPLLYLAALFHDIGKGREGEHAQVGALDMREFAE
                     LHGFSQAQINDMVWLVAEHLTMSITAQRRDIHDPQIISEFAKKVQNQTALSSLLCLTV
                     ADICATSESLWNDWKASLFTQLYQFTLQQLAQNLNYQAVAQEHRLQALELMKFVLSAD
                     ERIALNAFWQPCPERYFLHHTPTQLVWHALHYVKTRRLPMVLISNEYARGGTEIFVCC
                     QDQPQLFARIAQLLSQKRISIHDAQIITTENGVVLDSFIVSERDGDDDLTDERCMQIQ
                     QAMMKMLSLTETGIKFTKKPVKHLSFKRKTRLRFLPPSSKQQTEFELFTLDREGLLAQ
                     IGYIFNRLRLNLINAKITTIGERVEDFFVVSNDQGKALSEQEQLELKAILITELDSE"
     gene            complement(5006..5764)
                     /locus_tag="PXA71_002219"
     CDS             complement(5006..5764)
                     /locus_tag="PXA71_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005567524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5106290.1"
                     /translation="MITVKNLHHKIGNATILNNINLTIPNGGITALIGANGAGKSTLL
                     SLIARLQPIQQGEIHLNELNIANTASQTIARQLAILTQDNVIHSRITVKDLLLFGRYP
                     HHQGRITSHDNAIVEEALVRFDLSTFSHRFLNELSGGQRQRALIAMTFCQQTDHILLD
                     EPLNNLDMFHARELMKLLRKLTDELALTTIMVVHDINIAAAYADTIIAMKDGGIKMIG
                     TPKEIITTENLKTVFNLDAEVLECQGKPLVIHHI"
BASE COUNT         1848 a         1115 c         1194 g         1641 t
ORIGIN      
        1 tagaatcaat attattacta tacgaggtga aaaatgacag agatatataa cttcagtgcc
       61 ggcccggcaa tgatgccgaa aaaagtactc gaaaaagcgc aacaagaatt attaaattgg
      121 ctagaccaag gcacatcagt gatggaagtc agccaccgtg gaaagctatt tatggagctg
      181 gcggcacaat ctgaagcaga tttacgcaag ctgtataatg tgccggacaa ttatcgtatt
      241 ctatttcttc aaggtggtgc aagggggcaa tttgcagcca ttccaatgaa tttaatcggt
      301 aaaaaaggca aagcgcttta ccttaattca gggcattggt cggcaacagc agcaaaagaa
      361 gcacgtaact ttgcggaaat tgatgaaatc aatattttag agactgaacc gcaacttaaa
      421 gtgagtcgtt tagatttcag cgatattgca gagcaatatg attatatcca ttattgcacc
      481 aatgaaacca tcagtggggt agaaattttc gatattccga atgtcggaaa taccccgtta
      541 gtggcagata tgtcgtctaa tatcttagcc cgagggattg atatcaacaa atttggagta
      601 atttatgccg gagcgcaaaa aaatctaggg cctgctggca ttacgattgt gattattcgt
      661 gatgatttaa ttggcaatgc acgcaaagat accccatcta tttggaatta tgcaactcag
      721 cgagatgctg attcgatgat taataccccg ccaacttttg cttggtattt atgttcttta
      781 gtgttccaac atttactggc agagggtggt ttgaaagcta ctgaagaacg taatcttgct
      841 aaagctacat tgctttatga gtatttggat agttcaacat tctattacaa tacggtagca
      901 cacgaaaacc gttccttaat gaatgtaacc tttaccacgg gtaatgacga gctaaatgca
      961 aaatttgtgg cagaagcgac cgcttgtggt ttacaggcat tgaaaggcca taaagtatta
     1021 ggtggaatgc gtgcctcaat ttataacgca atgccgattg atggggtaaa agcactcatt
     1081 gaatttatga aggtatttga acaacgtaat gcttaattca agcttaagaa tataaattaa
     1141 agagccacgt ttgtggctct ttgaatttgg cactagcccg cagttttaaa caaatagaaa
     1201 ttatagccta cataagcggc aaagagtaat aagccctcta accgattaat tctgccacct
     1261 tctgtccgac gatagaggtt gatcccgaaa atgaataata agaaggtgag agccgacatc
     1321 atcaagacat cgcgagaaaa cacttccgct gaaacttgca ttggttctat agcaccggca
     1381 atccccacca cggctaacgt attaaataag ttagaaccga taatgttacc taaagctaaa
     1441 tccacttctc ctttacgagc agctgcaata gaagaggcta attcaggtag tgaggtgcct
     1501 accgccacaa tagtaagccc gattaccaaa tcactcacac caaaaaattt agccacttca
     1561 actgctcccc agactaagaa ttgggaacta attactagcg atactaaacc aataattagc
     1621 caaagaatgg attttcctaa tcccatctta gcactattgg ttaattctgc atcaacatct
     1681 aagcttaatg catcattttt acttttcatt gcggtaataa ttgtccacgc catatataca
     1741 aaaaacacag caagtaaaat aatcgcatca agttgagtga cgtttgcatc ataaaccaaa
     1801 taagcagaaa gcagggtgac agccagtaaa atcggcaact ctttttttaa cacatcggaa
     1861 ttaactgata gtggtttaat tattgcggtt aaacctaaaa tcagcgcaat attggtaatg
     1921 ttagaaccgt aggcattacc gagagcgata cccggcgatc cgcttaatgc agaagatgca
     1981 gatacgagca tctccggtgc agatgtacca aaaccaatga ccacaatacc gattaacaat
     2041 ggtgtcatac caaaatggcg agccgtagag gctgcccctt ccacaaaacg atccgcactc
     2101 caaactaata taattaagcc accgataata gcggcaacag caagtgtcat aaactatcct
     2161 tttagatgaa aaacataaag gcattataag cattttagcc aaaataaata taggcaaacg
     2221 aaaataaatg acctattatt ttgccagttt aggaagagat tatgatgaaa aacagcaacg
     2281 aattaaaaac gcttttatca gcatttacgg agcaacagcg gcaagcattt caatccgaaa
     2341 atgtactcag cttacttgca caacgtagcc aattttatga ccaactactg caagcacttt
     2401 ggcaagattt tggactcgct caatatgaac atattaccct attagcggta ggggggtacg
     2461 gacgtgagga gatgtttccg ctttcggatc tggatatctt agtgttaact gaaaaaccgc
     2521 tagaagaggc tattcagcag cgtttaaacg aactatttgc cttgctttgg gacagcaaac
     2581 tgcaacttgg caccagtgtg cgtacgctcg aagaatgtat tcagattggg aaagcagaaa
     2641 tttcggttgc cactaatatg ttggaagggc gatttttatt gggtaataaa tcgctttggc
     2701 taagattaaa agaagcactt tatcagccgg atttctggga tattaaagcg ttttttagag
     2761 cgaaaatggc ggaaaaaaat gagcgttatg cacgttatca taatactagc tataaccttg
     2821 agccagatct caaacatagc ccgggaggat tgcgagatct gcatttaatc tcttggatta
     2881 tgctacggca ttatggtgta tcttcttttg tcgatctcct caataaaggg ctactttacc
     2941 cggaagaata taaggagctg atcgcagcac aagcggtact ttttcggatg cgttttgcac
     3001 ttcatttgca actgaaacgt tacgataatc gccttcggtt tgacagacaa ttacaactga
     3061 gtgaaatatt aggctaccaa ggcgaagcaa atcaagcggt ggaattaatg atgcgagatt
     3121 attttcaagc cacaaaatct atttcgcaac tgagccaatt attgttaaac agttttgaac
     3181 aagcctatgt aaacgagttg caaaaaaatg cacaaaaaca accgcttgat cagtattttt
     3241 atcggcaaga acagcaattg tttgtggtcg aacgcaaaat atttaaaacc caacccacaa
     3301 caatgttgga tctctttttt catcttacta atgaccctac gttaatagcg aatgccgaca
     3361 ccttacgtca gttgagactg tgtttacagc aacaacacga gcctatgtgc tttttgcctg
     3421 aaatgcgaga gaaattcgta cagctttttg ctcaaccgaa agtcataagc cgagcaatag
     3481 ttccaatgca ccaactgggt tttttaagtg cttatctacc gcaatggaag gggatcgaag
     3541 ggctaatgca attcgaccta ttccatattt atacagtcga tgagcatacg gtcagagtca
     3601 tgttaaattt agaaaatttt agcgaagatc caagtcgggc gtttttccca ctatgtcatc
     3661 agctatttgc aacgctttct gagaaaccgt tgctctatct tgcggctctt ttccacgata
     3721 ttggcaaggg tagagagggc gaacacgctc aagttggtgc gctggatatg cgagaatttg
     3781 cggaactaca cggtttttct caagcacaaa tcaatgatat ggtttggctg gtggcagagc
     3841 atttgacaat gtcgatcacc gcacaaagac gagatatcca cgatccgcaa atcatcagcg
     3901 aatttgcaaa aaaagtgcaa aatcagaccg ctttatcttc actactttgt ttaacggttg
     3961 cagatatttg tgcaaccagt gagagcctct ggaatgattg gaaagcctcg ctgtttaccc
     4021 aattatatca atttacgcta cagcaactgg ctcaaaattt gaattatcaa gcagtggcac
     4081 aagagcatcg cttgcaagca ttagaactga tgaagttcgt gctttcagct gatgagcgaa
     4141 tagcattaaa cgcattttgg caaccttgcc cggagcgtta ttttcttcac catacaccga
     4201 ctcagttggt atggcacgct ctgcattatg taaaaactcg ccggttgccg atggttttaa
     4261 tcagtaatga atatgcccgt ggtggtacag aaatttttgt atgttgccaa gatcaacctc
     4321 aactgtttgc tcgaatcgcc caattactca gccaaaaacg cattagcatt cacgatgcac
     4381 aaattattac tactgaaaat ggtgtagtgt tagacagctt tattgtaagt gagcgtgatg
     4441 gtgatgatga tttaaccgat gagagatgta tgcaaattca gcaggcgatg atgaaaatgt
     4501 taagcttaac tgaaacaggc ataaaattta ccaaaaaacc ggtgaaacat ttgtcattta
     4561 agcgtaaaac tcggctgcgt tttcttcctc cgtcatcaaa gcaacaaacc gaatttgaac
     4621 tttttacctt ggatagagaa gggttgttgg cacaaatagg ctatattttt aaccggctcc
     4681 gattaaattt aattaatgcg aaaattacga ctattggtga aagggtagag gatttctttg
     4741 tggtcagtaa tgatcaagga aaagctttat cggaacaaga acagttagaa ctaaaagcca
     4801 ttctaattac cgaactagat agtgaatgaa aacaaccgct tggagtgaag actgcaagcg
     4861 gtaaattttt caacgtttta ggtaaattaa atcacgagtt aagagaggtt gagaattcaa
     4921 gaaattagaa actaaatata agtttctatc gtttagatta ataaattaag acgcaatttt
     4981 tattaattac catgatcttc aaacgttaaa tatgatgaat aactaaaggt ttgccttggc
     5041 attctaacac ttcggcatca agattaaaca ctgtttttaa attttcagtg gtgataatct
     5101 cttttggggt gccgatcatc ttaattccac catctttcat tgcaataata gtatctgcgt
     5161 aagcagcagc aatgttgatg tcgtgtacca ccattatagt agttaaggcg agttcatcgg
     5221 ttaattttcg taataatttc attaattccc gagcatggaa catatctaaa ttattcagtg
     5281 gttcatctaa taagatatga tcggtttgct gacagaaggt cattgcaatt aatgcccgct
     5341 ggcgttgccc tccggataat tcatttaaga atcggtggga gaaagtcgat aaatcaaatc
     5401 gtaccagagc ctcttctaca atggcattat cgtgcgaagt gattctgcct tgatgatgag
     5461 ggtaacgccc aaataacagc agatctttga cggtaatacg gctatgaatc acattatctt
     5521 gggtcaagat agccagttgt cgagcgatag tttgagaagc tgtgttggct atattcagct
     5581 catttaagtg gatttcaccc tgttggatag gttgcaagcg tgcaattaaa gagagcaggg
     5641 tggatttgcc cgcaccattt gctccgatta aagcggtaat accaccattt ggaatggtta
     5701 aattgatatt attcagaatc gtggcattcc cgattttgtg gtgaagattt ttaaccgtta
     5761 tcattttctt ccttaattta tggttatttt ttccgttt
//
LOCUS       DANLRW010000127         5725 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.128, whole genome shotgun sequence.
ACCESSION   DANLRW010000127 DANLRW010000000
VERSION     DANLRW010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5725
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.128"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..488)
                     /locus_tag="PXA71_002220"
     CDS             complement(<1..488)
                     /locus_tag="PXA71_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106291.1"
                     /translation="MKQNRKKSKKVIGTHKKENGLKQFIKNNKIPIILISAIWSIFTT
                     DILERIANMPIIWKNFEENYLYNKKLDGLWSTNTNYIIDYKLLNIPEEQPNVIIEFMV
                     NKDDNSILGEMTSTALCELIPLTWSFRLESPKPTLLNLIFDRELKLSYLVSGGYTELS
                     TF"
     gene            complement(733..1326)
                     /locus_tag="PXA71_002221"
     CDS             complement(733..1326)
                     /locus_tag="PXA71_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106292.1"
                     /translation="MHNNLAIFYCGTNGAGKSTLRSFNQDKVEIVIDSDNIAMQINPL
                     NPRLADIEAGRKAIELFQFAVKNQVAFSMESTLSGKSILKRMENAKAGYFKTRLNYIG
                     VDSYKINIARVKARVKAGGHFIDEETIRKRYHISRENLIEAIFINDETLIYDNSETKP
                     NLILQIADKKVIKISDKIPNWCNQLCDELVELGFKTT"
     gene            complement(1316..1486)
                     /locus_tag="PXA71_002222"
     CDS             complement(1316..1486)
                     /locus_tag="PXA71_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106293.1"
                     /translation="MTSREELLKKQRELDILFTAWFEEKKKHEVLTYRRENGDLIQHY
                     PDGTEKVIEYAQ"
     gene            complement(1488..2229)
                     /locus_tag="PXA71_002223"
                     /pseudo
     CDS             complement(1488..2229)
                     /locus_tag="PXA71_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250915.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
     gene            complement(2226..2669)
                     /locus_tag="PXA71_002224"
     CDS             complement(2226..2669)
                     /locus_tag="PXA71_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5106294.1"
                     /translation="MLKNLSWRAKRFDELSTQELFEIYHARTAVFVVEQNCPYQEVDN
                     KDLQAVHFFTKNAKNLTAYCRLIPANDGVHIGRVLVVKENRGSGLARELVQKAMDYCG
                     EHFPAQPIHAQAQSYLQGFYESFGFKAVSEVYLEDGIAHLDMVLE"
     gene            complement(2663..3100)
                     /locus_tag="PXA71_002225"
     CDS             complement(2663..3100)
                     /locus_tag="PXA71_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HDL5106295.1"
                     /translation="MKQVQFYLLSQADAAELSAAEMQACELAAQAWRLGKRVLIACET
                     EQQALNIDEALWARDPDSFVPHNLSGEITTYPTPIEISWKGKRNAQRRDLLISLQTQL
                     PEFIGSFTQIIDFVPVEETAKAQARDRYKQYRQLGWQLETIQC"
     gene            3339..3782
                     /gene="lysM"
                     /locus_tag="PXA71_002226"
     CDS             3339..3782
                     /gene="lysM"
                     /locus_tag="PXA71_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-binding protein LysM"
                     /protein_id="HDL5106296.1"
                     /translation="MGLFDFVGDIGRKLFNKEEDASKAVTEHLAEDNPGVENVNVTVE
                     NGVAKISGIASTAAAVEKAVLMAGNVAGITEVNIDEVTLPDDVQLASDDELYVIQKGD
                     TLWEIATKAYGNGAKYKAIVEANKEVIKDENKIFPGQKIRIPKGL"
     gene            complement(3836..4687)
                     /locus_tag="PXA71_002227"
     CDS             complement(3836..4687)
                     /locus_tag="PXA71_002227"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005701564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDL5106297.1"
                     /translation="MKQYLDLCNRIVSEGKWVANERTGKHCLTVINADLTYDVEKGEF
                     PLVTTRRSYWKAAIAELLGYIRGYSNAADFRQLGTKSWDANANENAQWLANPYRKGED
                     DMGLVYGAVGRNFPKPDGGSVDLLRQIVDDLKKGIDNRGEIYTFYHPGAFHMGCLRPC
                     LHSHHFSLLDGTLYLNSTQRSADVPLGLNWNMIQCYTFLALMAQITGHKAGQAFHKIV
                     NAHIYEDQLELMRDVQLKREPLNAPKLIINPDIKSLEDLETWVSLDDFKVEGYEYHPA
                     IQYPFSV"
     gene            4780..5331
                     /locus_tag="PXA71_002228"
     CDS             4780..5331
                     /locus_tag="PXA71_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106298.1"
                     /translation="MKGIMKSILVFSTAVFLAACSSNKSGWTRLNDNDVDQKSYAIAY
                     GATAQTYADRVNESYDINSFMNGVNDWYTKKVTLPIEQIRAITINRMLDHNVYAYYSG
                     VIYAADLQANFNHLDPNCWGLVQPASMTQGIHDAMLDLQKNKVRGDEYIKNGVEQILH
                     LCVKTIAEDENESQSKGKTKKHK"
     gene            5540..5634
                     /locus_tag="PXA71_002229"
     tRNA            5540..5634
                     /locus_tag="PXA71_002229"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5575..5577,aa:Ser,seq:gct)
     gene            5648..5724
                     /locus_tag="PXA71_002230"
     tRNA            5648..5724
                     /locus_tag="PXA71_002230"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5682..5684,aa:Arg,seq:acg)
BASE COUNT         1682 a         1090 c         1111 g         1842 t
ORIGIN      
        1 ttaaatgttg atagctcggt atatccccca ctaacaagat aactcaattt caactctcta
       61 tcgaaaataa gatttaataa tgttggctta gggctttcca atctaaaact ccaagttaga
      121 ggtattaact cacacagagc tgttgaagtc atttccccta aaatcgaatt gtcatcttta
      181 ttaaccataa attcaatgat aacatttggt tgctcttcag gtatgttcaa taatttatag
      241 tcgataatgt aatttgtatt tgtagaccat aaaccatcca gttttttatt atataggtaa
      301 ttctcctcga aatttttcca aataataggc atgtttgcga tgcgttctaa aatatcagtt
      361 gtgaagatac tccatatggc agatataaga ataataggaa ttttgttatt ttttatgaac
      421 tgttttaagc cattctcttt tttatgagta ccaataactt ttttagactt tttcctattc
      481 tgtttcatct ttgtgttttt gttccaatat ccccgatggt gatcgtcttc gacgagagct
      541 tatttattta agaacctatc agagataggc ataagcggtc tgtttcgaga agttttttgc
      601 aaagtttttc tttaatccga cagcttgtca cccacacaca agccgtgtgg ggttacgcat
      661 agctgagcca ctttgtggct ctaagttaca gctccaaagg agctgggatt gtcgagccta
      721 gcacggctcg tgctaggtgg ttttaaaccc taattccact aattcatcac aaagctgatt
      781 acaccaattc ggtattttgt ctgaaatttt tatcactttc ttatcagcaa tctgcaaaat
      841 caaattcggc ttggtttctg aattatcata aatcagtgtt tcatcattga taaaaatcgc
      901 ttcaattaaa ttttcacggc taatgtgata gcgttttcta atggtttctt catcaataaa
      961 atgtccgccg gctttcactc ttgcttttac ccgtgcgatg ttaattttat agctatcgac
     1021 accaatataa tttaatcgag ttttgaaata tcctgctttg gcattttcca ttcgttttag
     1081 aatagattta cccgagaggg ttgattccat tgaaaatgca acctgatttt ttactgcaaa
     1141 ctgaaatagt tcgattgctt ttctgcccgc ctcaatatcg gccaatcttg gattgagtgg
     1201 gttaatctgc atcgcaatat tatcggaatc aatcacaatc tcgactttat cttgattgaa
     1261 agaacgtaaa gtagatttgc cggctccgtt tgtgccacag taaaaaattg ctaggttatt
     1321 gtgcatattc aatcactttt tccgtaccgt ccggataatg ctgaattaaa tccccatttt
     1381 ctcggcgata cgtcagcact tcgtgctttt tcttttcttc aaaccatgct gtaaagagaa
     1441 tatccagttc acgttgtttt ttcagtaatt cttcacgact tgtcatttta tgtcctctgt
     1501 ttcagaatcg ccaaatacct ttccaactca gctaattcat actgactaat caattcaacc
     1561 aaactactaa tatcttgttg atttttatgg aaatcatcaa aacattggta atattgggct
     1621 cgattggtaa atttaatatc aatcggtaaa tagccctgtt ttaataattc aaaattaatc
     1681 agtaatcgcc ctgtgagccc gtttccatca ataaaagggt gaatgctttc aaaggctaaa
     1741 tgcagccaac tgattgcctc tatgggatga agtgcggtca gtttttgttg atatttttca
     1801 atcaataatt gcatttcttc ggcaattaaa taaggggggg gcattttctg cccctaaaat
     1861 tcgtactgga attttgcgat aaacccctcg gctttccgca ttgcccatta ataccagaga
     1921 atgaatatct ttaatcgctc gttcgcttaa tggttcttta ttggcgacta attcataaat
     1981 atagttgaat gcatccttaa aaccgataat atctaaatgc tcccgaatcg gtttttcggc
     2041 aatggtcatt ccctctttta aaatgagcac cgtttcacgc aaagtaatgg tattgccttc
     2101 aattgcattg gaattatagc tgctttcaat aataaactct tcccgcagtc gttgaacttc
     2161 gctttcagat aatggacggc gttgtgaaag tgctgttttt aattgttcga ttttagctaa
     2221 tttattcatt ctaacaccat atccaaatgc gcaatcccat cttccaaata cacttctgaa
     2281 accgctttaa acccaaaact ttcataaaac ccttgcaggt aactttgggc ttgggcgtga
     2341 atgggttgag caggaaaatg ttcgccacaa taatccatcg ctttttgtac caattccctt
     2401 gctaagcctg agccacgatt ttctttcacc accaacactc tacctatatg cacaccatca
     2461 ttggctggaa ttaaacggca gtaagcggtc agattttttg cattttttgt aaagaaatgc
     2521 accgcttgca ggtctttatt atcgacttct tggtaagggc agttttgctc aaccacaaac
     2581 accgctgtac gtgcgtggta aatctcaaac aactcttggg tggagagttc atcaaagcgt
     2641 tttgcgcgcc aagagaggtt ttttagcatt gtatcgtttc cagttgccaa ccaagttggc
     2701 ggtattgttt atagcggtca cgagcctgtg ctttggcggt ttcttccacc ggcacgaaat
     2761 caataatctg ggtaaaactg ccgataaatt cggggagttg ggtttggagt gaaatcaaca
     2821 aatcccgacg ttgagcattg cgtttacctt tccacgaaat ttcgataggc gttgggtaag
     2881 tggtgatttc tcccgataaa ttgtgcggca cgaacgaatc cggatctctt gcccaaagtg
     2941 cttcgtcaat atttaacgct tgttgctcgg tttcgcatgc aatcagtacc cgtttaccta
     3001 atcgccacgc ttgagccgca agttcgcagg cttgcatttc agcagcggaa agctcggctg
     3061 catcggcttg gcttaataga taaaattgta cttgtttcac agaatgttcc cagaaattca
     3121 atcagatatt taaacttaat attctagctg aaaatgagta aaatataaaa tctaagcgtt
     3181 tgtttttgca aaaaattgag aaaaaatgac cacttgtgtt gcgttgcctt gaggaactaa
     3241 ttagctttta gacgttctaa gagaacaatg cactatttca atagttggaa attgtgtaga
     3301 atacccactt catttagcta ttttataagg aacttactat gggcttattt gattttgttg
     3361 gcgacattgg tcgtaaatta tttaataaag aagaagatgc ttcaaaagcg gttacagagc
     3421 atttggcgga agacaatccg ggcgttgaaa atgtaaacgt aacggttgaa aacggggtag
     3481 cgaaaatttc aggcattgct tcaaccgcag cagctgttga gaaagcggta ttgatggcgg
     3541 gtaatgtggc tggtatcact gaggtaaata ttgatgaagt gaccttgcct gatgacgtgc
     3601 aacttgcaag tgatgatgag ctttatgtta tccaaaaagg ggatacgttg tgggaaatcg
     3661 ccacaaaagc ttatggtaac ggtgcaaaat ataaagcgat tgtagaagca aataaagaag
     3721 ttattaaaga cgaaaataaa atcttcccag ggcaaaaaat tcgtatcccg aaaggtttat
     3781 aatcaaattg aaagagctaa gctggtcgaa agtttagctc tttttgtagg tggtgttaga
     3841 ctgaaaatgg atattgaatg gcagggtggt attcataacc ttcaactttg aaatcatcta
     3901 agctcaccca agtttctaaa tcttctaagg attttatatc aggattaatg attaatttag
     3961 gtgcattgag tggttctcgc ttaagttgaa catcacgcat taattctagt tgatcttcat
     4021 aaatatgcgc attgacaatt ttatggaacg cttgtcctgc cttatgccct gtaatttgag
     4081 ccattaaagc taaaaaggta tagcattgaa tcatattcca atttaaccca agcggtacat
     4141 ctgccgaacg ctgagtacta ttcaggtaaa gcgtgccatc aagtagagaa aaatgatggc
     4201 tgtgtaaaca aggacgtaag cagcccatat ggaaagcgcc ggggtggtag aaggtataaa
     4261 tttcaccacg gttatcaatt ccttttttca aatcgtccac aatttgtcgc aataaatcga
     4321 ctgagccacc gtctggtttc gggaaattac gccctactgc gccgtaaacc aagcccatat
     4381 catcttcccc ttttcgatag ggattagcaa gccattgtgc attttcattt gcattagcgt
     4441 cccacgattt tgtgcctaat tgacggaaat cagcagcatt actatagcct cgaatatagc
     4501 ctaaaagttc ggcaatcgca gctttccaat aactacggcg agtggtaact aaaggaaatt
     4561 ctcctttttc tacgtcataa gttaagtcag cattaatgac tgtgaggcag tgtttgcctg
     4621 tacgttcatt tgcaacccat ttgccttcgc taacgatgcg gttacataag tctaaatact
     4681 gtttcattat ttacctcata aaaaatttta ggtaattttg ccatttattc ggtaaaatag
     4741 ctaaaacttt atgacacaac acaataagga gttatggata tgaaaggtat aatgaaatcc
     4801 attctggttt tttccaccgc tgttttttta gcagcttgtt catcgaataa aagcggttgg
     4861 acacgtttaa atgataatga tgttgatcag aaatcttatg ctattgctta tggtgcaacg
     4921 gctcagactt atgcggatag agtaaatgaa agctatgata tcaattcctt tatgaatggg
     4981 gtaaatgatt ggtacactaa aaaggttaca ttgccaattg agcaaattag agcaataacg
     5041 attaatcgaa tgttagacca taatgtgtat gcttattata gtggtgtgat ttatgccgca
     5101 gatttgcagg caaatttcaa tcatttagat cctaattgtt gggggcttgt tcaaccagcg
     5161 agtatgaccc agggcattca cgatgcgatg ttagatttac agaagaacaa agttcgtgga
     5221 gatgagtata tcaaaaatgg ggttgagcaa atattgcacc tttgtgtaaa aacgattgct
     5281 gaagatgaaa atgaatcgca atctaaaggt aaaaccaaaa agcataaata agttaagcta
     5341 tgacaagcgg taaaattttt aaaaaatttt accgcttttt tataaccgta tgaaatgttt
     5401 aatatttatt ctatgaaact taaaaaaaca gcgttttgtt tattcaatag gcaaacactc
     5461 gggatttttc aattttcagg aaaaagaatt tgacatcttt ttaaattcta gtaatatggc
     5521 gcccacagac acagtgagtg gtgagatggc cgagcaggct gaaggcgctc ccctgctaag
     5581 ggagtatagg gttaaaaagc tctatcgagg gttcgaatcc ctctctcacc gccatttact
     5641 ttatcacgca cccgtagctc agctggatag agtactcggc tacgaaccga gcggtcagag
     5701 gttcgaatcc tctcgggtgc gccat
//
LOCUS       DANLRW010000128         5682 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.129, whole genome shotgun sequence.
ACCESSION   DANLRW010000128 DANLRW010000000
VERSION     DANLRW010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5682
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.129"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            87..776
                     /locus_tag="PXA71_002231"
     CDS             87..776
                     /locus_tag="PXA71_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HDL5106299.1"
                     /translation="MSTLSRDSILSQIQNGLIASCQPVDDGPMDKPEIVAAMAAASVI
                     GGAKGIRIEGVDNLKAARAAVNVPIIGIVKRDLPDSPVRITPFLEDIDALAEAGADII
                     AVDGTFRTRPVSIEEAVKRIHEKGCLAMADCSTLEEGLHCQQLGFDIVGSTMSGYTGG
                     EMPDEPDYQLVKDLKAAGCNVMAEGRYNTPELAKTAIEIGADYVTVGSALTRLEHIVS
                     WFADSVKSAQK"
     gene            786..1688
                     /locus_tag="PXA71_002232"
     CDS             786..1688
                     /locus_tag="PXA71_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HDL5106300.1"
                     /translation="MRCLAIDIGGTKIATAIVQHNQVSQRQQIQTPTDKPQADQAGSL
                     HQAIGEIMQHYQGQFDFVAVASTGIINKGVLTALNPKNLGGLAEFPLKQSIEKHTDKP
                     IALLNDVQAAVCAEYLNEDQQAVKNFVFITVSTGVGGGIILNGELQIGSNGIAGHIGH
                     TLADPNGPLCGCGRVGCVEAVAAGRAIEAVSSQWEKPCSPKEVFERFRQGNPQAVELV
                     QKSAKAIANLIADLKISLDIQKVVLGGSVGLAEGYLPQVSNYLAEMPSVYHCVLENAL
                     SGQDAGLIGAAWWAENQLNQGFTL"
     gene            1713..2591
                     /gene="nanA"
                     /locus_tag="PXA71_002233"
     CDS             1713..2591
                     /gene="nanA"
                     /locus_tag="PXA71_002233"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005718701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HDL5106301.1"
                     /translation="MKNLKGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYV
                     GGSTGENFMLSTEEKKEIFRIAKDEAKDEIALIAQVGSVNLKEAVELGKYATELGYDS
                     LSAVTPFYYKFSFPEIKNFYETIIRETGNKMIVYSIPFLTGVNIGVSQFAELFENEKI
                     IGVKFTAGDFYLLERLRKAFPNHLIYAGFDEMMLPATVLGVDGAIGSTFNVNGIRARQ
                     IFELAQQGKIKEAFEIQNVTNDLIEGILGNGLYQTIKGLLELEGVQAGYCREPMTKEQ
                     TPAQKEVTKQLKAKFL"
     gene            complement(2652..2858)
                     /locus_tag="PXA71_002234"
     CDS             complement(2652..2858)
                     /locus_tag="PXA71_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106302.1"
                     /translation="MDNKQTNGFNDIIVKADITQNIWSTGFYDIGRELKSENTRQEKV
                     RLKYNGDTLHRGRKSRMASLIASR"
     gene            complement(2816..3454)
                     /locus_tag="PXA71_002235"
     CDS             complement(2816..3454)
                     /locus_tag="PXA71_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106303.1"
                     /translation="MKKILLLVLLLTLATQADEGNNTQVCAEQQHQIIAHYFKISQEK
                     LSARTLASACKTAPNNSTETLVSYAVIEPKYSKENYQNDENTPKWTLFVARVNDNAIL
                     QSWEQDMEIDASIDVNADSLKIDTARYILNDKVRAFGVRFNNAARGPSAPEYSANDHL
                     MLFVPEKEKLKLVFDYPMTFWSILDDKETKTETQTWYCKWITNRPTASMILL"
     gene            complement(3696..4415)
                     /locus_tag="PXA71_002236"
     CDS             complement(3696..4415)
                     /locus_tag="PXA71_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5106304.1"
                     /translation="MSKPNIYDESFSERMKWIAKNSFKDNYSEFARAVGVAQASLSRW
                     VKGEADPSRSNLVKIAEVSNVSLEWLATGKESKPQSENTSIVAREFERLEKMADDIVS
                     MINSFRTINVSAGFGSFNEGVTKPDGQEPYADSLLQSLGVKAHNCGVFWANGTSMHPT
                     IADSDQMLVDFSKREPRGDDKIYLVQNGESVWVKRIRKEWDYIELISDNESYRPIQIT
                     AEEAQNLQIIGQVVHIGHSLV"
     gene            4592..4870
                     /locus_tag="PXA71_002237"
     CDS             4592..4870
                     /locus_tag="PXA71_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5106305.1"
                     /translation="MSVLNDVKKTAQRDWHKADILAELRKKGWSLRSLAKAGNVSHNT
                     LKSVLDKPYPKMERLVANAIGVAPEVIWAGRTAERIERNRRPTLTNKF"
     gene            4915..>5682
                     /locus_tag="PXA71_002238"
     CDS             4915..>5682
                     /locus_tag="PXA71_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5106306.1"
                     /translation="MSELSLKTHYSVAELLSFKLSSLPSAHKNVLEKAIRENWQSQKR
                     KGRGGGVEYELISLPTEVQQEIRTKLLKLLPAEISKGELSVVRQNIDLEQITDKQLST
                     ADARIMVVRWFLMQEVQLGLSRTKTLDQVIAAVASSEIPAEICKAIMAGNSKAGGKLK
                     LSKRTLHSWVLAYEAGENSAERLKQMIPLKTQKRAVPERCGWLQAFLPFYQTFSNVAL
                     TQAYAQFAMQYEGEDLPTESQVRYALKQLPDYVVQQGR"
BASE COUNT         1697 a         1149 c         1241 g         1595 t
ORIGIN      
        1 ttattaaatt ataattattt ggagtatttt ttcacaaaca aaatctagtc cattgactac
       61 cttttgaaca taaaaaagga actgttatgt caacactatc tcgtgattct attttaagtc
      121 aaattcaaaa cgggctgatt gcctcctgcc aaccggttga tgacggcccc atggataaac
      181 ctgaaattgt cgccgcaatg gcagcagcct ctgtgattgg tggtgctaaa ggcattcgca
      241 ttgaaggtgt cgataattta aaagccgctc gtgcggcagt gaatgtgccg attatcggca
      301 ttgtaaaacg tgatttgcca gattcccctg tgcgtattac gccattttta gaagatattg
      361 atgccttagc cgaagccggt gccgatatta ttgcggtgga cggcacattc cgcacccgcc
      421 cggtcagcat tgaagaggcg gtaaaacgca ttcacgaaaa aggttgcttg gcaatggcgg
      481 attgctccac ccttgaagaa ggtttacatt gccaacaatt aggctttgat attgtgggta
      541 gtacaatgtc tggctacacc ggtggcgaaa tgcctgatga gccggactat caattagtga
      601 aagatttaaa agctgccggc tgtaatgtta tggcggaagg tcgctacaac acgcctgaac
      661 tggcaaaaac ggcgattgaa atcggggcgg attacgttac cgttggatcg gcattgaccc
      721 gcttagagca tattgtgagc tggtttgccg actctgtaaa atcggctcaa aaataggagc
      781 tgcttatgcg ttgtttagca atagacatcg gtggcacgaa aattgccacg gcaattgtgc
      841 aacacaatca agtgtcacaa cgccaacaaa ttcagacccc gactgataaa ccacaagctg
      901 atcaggcagg cagtttgcat caagcgattg gtgagataat gcaacattat caagggcaat
      961 ttgattttgt ggcagttgcc tcaacaggca ttatcaataa aggggtgctt accgcattaa
     1021 atcctaaaaa tttaggcgga ttggcagaat ttccgttgaa acaaagcatt gaaaaacata
     1081 ccgataagcc gattgcatta ttaaatgacg tgcaagcggc ggtgtgtgcc gaatatttaa
     1141 atgaagacca acaagcggtc aaaaattttg tatttattac cgtttccacc ggcgtaggcg
     1201 gcggcattat tttaaacggc gaactgcaaa tcggcagtaa cggcattgca ggacatatcg
     1261 ggcatactct agccgatccg aacgggcctc tctgtggttg tggacgagtc ggctgtgtcg
     1321 aagcagtcgc agcagggcgt gcaatagagg cagtttccag ccaatgggaa aagccttgtt
     1381 caccgaaaga ggtgttcgag cgattccgcc aaggcaaccc acaagcggtc gaattagtac
     1441 aaaaatctgc aaaagcgatt gctaatttaa ttgcagattt aaaaatcagt ttagatatac
     1501 aaaaagtggt gttaggtggc agtgtgggct tagcggaagg gtatttaccg caggtgtcca
     1561 actatttagc tgaaatgccg agcgtatatc attgcgtatt ggaaaatgct ctatccgggc
     1621 aagatgccgg cttaatcggt gcggcttggt gggcggaaaa ccaacttaat caaggtttta
     1681 ctctttaaca aattctaact ccggagatcc aaatgaaaaa cttaaaaggt atttttagtg
     1741 cgttactcgt ctctttcaac gaagacggca ccatcaacga aaaaggctta cgccaaatta
     1801 tccgccacaa catcgacaaa atgaaagtgg acggtttata tgtcggcggt tcaaccggtg
     1861 aaaactttat gctttctacc gaagagaaaa aagaaatttt ccgcattgcc aaagacgaag
     1921 cgaaagatga aatcgccctt atcgcccaag tcggtagcgt aaacttaaaa gaggcggtag
     1981 aactgggtaa atatgccaca gaattaggct acgacagctt atctgcggtc acaccgttct
     2041 actacaaatt cagcttcccg gaaatcaaaa atttctacga aaccattatt cgtgaaaccg
     2101 gcaacaaaat gattgtttac tccattccgt tcttaaccgg cgtaaacatc ggtgtgagcc
     2161 aattcgctga attatttgaa aacgaaaaaa tcatcggtgt aaaattcact gccggcgatt
     2221 tctacctgtt agagcgttta cgcaaagcgt tcccgaacca cttaatctac gcaggtttcg
     2281 atgaaatgat gctaccggca acggtattag gtgtggacgg tgcaatcggc tcaaccttca
     2341 acgtaaacgg tattcgtgca agacaaatct ttgaattagc ccaacaaggc aaaatcaaag
     2401 aagcatttga aatccaaaat gtaaccaacg atttaatcga aggcatttta ggcaacggtt
     2461 tataccaaac catcaaaggc ttattggagt tagaaggtgt gcaagcaggt tactgccgtg
     2521 agccgatgac gaaagaacaa actccggcac aaaaagaagt gaccaaacag ttaaaagcta
     2581 aattcttgta atttaagttg caaaaggcta aacgaaaatc accgcttgta gtaacaagcg
     2641 gtgatttttt ctcaacgact tgcaattaat gaagccattc tgctttttct accacggtgt
     2701 aacgtgtcac cattatattt taatcgcact ttttcttggc gagtattttc tgatttcaac
     2761 tctctaccta tatcataaaa ccctgtactc cagatatttt gagtaatatc cgcttttaca
     2821 ataatatcat tgaagccgtt ggtctgtttg ttatccattt gcaataccaa gtttgtgttt
     2881 ccgttttggt ttctttatca tctaaaatag accaaaaagt catcgggtaa tcaaaaacaa
     2941 gttttaactt ttctttttcc ggcacaaata acatcaaatg atcatttgca gaatactcag
     3001 gagcacttgg accacgagca gcattattaa acctcacgcc gaaagctctt actttgtcgt
     3061 ttagaatata acgggcggta tcaattttaa gactatctgc attcacatcg atagaggcat
     3121 cgatctccat atcctgctcc cacgattgca atatcgcatt atcattcaca cgagcaacaa
     3181 aaagcgtcca cttaggtgtg ttttcgtcgt tttgataatt ttctttgctg tatttaggct
     3241 ctattaccgc ataactcact aaggtttccg ttgaattgtt aggagctgtt ttacaggcag
     3301 aagctaaagt acgagcagaa agtttctctt gagaaatctt aaagtaatga gcaataattt
     3361 gatgttgttg ctcagcacaa acctgtgtgt tattaccttc atctgcttga gttgcaagcg
     3421 taagtaaaag aactaagagg agtatctttt tcatatagat ttatccgtat agaaagataa
     3481 ctcattctat ggggtactga ctctttttgc atagagagaa agaaaaaaat ttggtcggaa
     3541 aaataacggc gagcctagcg aaaacaaggg ttcgccgtaa ttttatgggg gaagctatgt
     3601 aaaaaacaaa atgagcagga ttagaaaaaa atgagcagtt tttgcgatat tttttgcata
     3661 ggtttgatcg gttttaaaac tattttaaat ctgttttaaa ctaaagagtg tccgatgtgg
     3721 actacctgcc cgatgatttg gaggttttga gcttcttcgg cggtaatctg tattgggcgg
     3781 taggactcgt tatcgctaat taattcaata tagtcccatt cttttctaat ccgtttaacc
     3841 catacgcttt ccccattctg cacaagataa atcttatcat caccacgagg ctctcgtttg
     3901 ctgaaatcta ccagcatttg gtcactgtct gcaatggtag ggtgcattga tgttccattt
     3961 gcccaaaaca cgccgcagtt gtgggctttt acgccgaggc tttgcagcag gctgtcggcg
     4021 taaggttctt gcccgtctgg cttcgttacg ccctcgttaa agctgccaaa gcctgctgaa
     4081 acgttgattg ttctgaagct gttaatcatt gaaacaatat catcagccat tttttctagt
     4141 cgctcaaact ctcttgccac aatactggta ttctctgatt gtggtttgct ttccttacct
     4201 gttgccagcc attcaaggct cacatttgac acctctgcta tttttacaag atttgaacga
     4261 gatggatctg cctctccttt tacccaccta gatagtgatg cttgggctac ccccactgct
     4321 cttgcaaact cactgtaatt gtccttaaag ctattttttg caatccattt cattctttct
     4381 gagaagctct catcgtaaat gtttggttta ctcatctttt acgtttccat taataaagtt
     4441 ttactcgtaa aacatactca taaaccattg atttttaagt tatttatgaa taaagcaaaa
     4501 atattttaga tgtttttatg ttttacggtt gatttgttta aagttttacg gttaaataca
     4561 cgcatcaaat agataaaaag aggtgtatcg aatgagtgta ttaaacgatg ttaaaaaaac
     4621 cgcacagaga gattggcata aagccgatat tcttgcggaa cttcgtaaaa aaggttggtc
     4681 acttcgttct ttggctaaag caggcaatgt tagccataac acgctgaagt ctgttttaga
     4741 caagccttac cccaaaatgg aacgcttagt tgcaaatgcc ataggggttg cccctgaagt
     4801 gatttgggct gggcgaacag cagaacgcat tgaacgtaat cggcgaccaa ctttaactaa
     4861 taagttttaa tcataaatga tctttaacgt aaaagatata ggagaagaac atttatgagc
     4921 gaattaagtt taaaaacgca ctattcagtg gctgaattgt taagttttaa gttatctagc
     4981 ctaccaagtg ctcataaaaa tgtgcttgag aaagcaataa gggaaaactg gcaatctcaa
     5041 aaacgcaaag gcagaggcgg cggggttgaa tatgaattaa tcagtttacc caccgaagtc
     5101 caacaggaaa tccgcaccaa gttactcaaa cttcttcctg ctgaaatcag caaaggcgaa
     5161 ttgagtgtag tgcgacaaaa cattgatttg gagcagataa ccgataaaca actttctacg
     5221 gcagatgctc gcattatggt ggtgcggtgg ttcttgatgc aggaagtgca gttggggcta
     5281 agccgcacaa aaacgctaga ccaagtcatt gcagcggtgg caagcagtga aattcctgct
     5341 gaaatttgca aagcgattat ggcgggcaat agtaaagccg gtggaaagtt aaagctatct
     5401 aaacgcacct tgcatagttg ggtgctggcg tatgaggcag gcgaaaattc agcggaacgg
     5461 ttaaaacaga tgataccgct gaaaacacaa aaacgtgccg tgcccgagcg gtgtggttgg
     5521 ttgcaagcct ttctgccgtt ttatcaaacc tttagcaatg tggcactcac acaggcttat
     5581 gctcaatttg caatgcagta tgagggcgaa gatttaccta cagagagcca agttcggtat
     5641 gccttgaagc agttgcccga ttatgtggtg caacaagggc gg
//
LOCUS       DANLRW010000129         5602 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.130, whole genome shotgun sequence.
ACCESSION   DANLRW010000129 DANLRW010000000
VERSION     DANLRW010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5602
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.130"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(53..129)
                     /locus_tag="PXA71_002239"
     tRNA            complement(53..129)
                     /locus_tag="PXA71_002239"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(93..95),aa:Val,seq:gac)
     gene            complement(193..993)
                     /gene="apaH"
                     /locus_tag="PXA71_002240"
     CDS             complement(193..993)
                     /gene="apaH"
                     /locus_tag="PXA71_002240"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     ApaH"
                     /protein_id="HDL5106307.1"
                     /translation="MATYIVGDLHGCFNEFQLLLEKVNYNPKQDELFLTGDLVARGED
                     SLACLRFVKDSANNAKTVLGNHDLHLLGIKRVKPNDKIDAIFEAKDRLDLQNWLRNQP
                     LVIHHPKHQFLLTHAGISPEWDLATTLACAKEAEKVLQSDNYADYIAQMYENKPERWS
                     EDLQGVERWRYIINVFTRMRFCYTDKRLDFDCKLPLEQAPQELLAWFDLDNPLFTQKN
                     IIFGHWASLMGKCTRPNIYALDTGCAWGSHLTMLRWEDKQIFTQKRLK"
     gene            complement(1085..3061)
                     /locus_tag="PXA71_002241"
     CDS             complement(1085..3061)
                     /locus_tag="PXA71_002241"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005617246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HDL5106308.1"
                     /translation="MFQNNPLLAQLKQQIEASKEYVAGVVKASDKAFGFLECDKKSYF
                     IPPAEMKKVMHGDSVKAVVKRDGDKEQVEIDSLLEPMLDRFIAQVRLNKEGKLQLAVD
                     HPSIKQTIPANTHKKATEKLENGDWVVAQLKTHPLRDDRFFFAQVTQFICKESDNFAP
                     WWVTLARHEQPREPVANEKNYELHDELAREDLSHLYFTTIDSPSTQDMDDALFIEPIK
                     QNGKRTGWRLVVAIADPTAYIPENSHIEKAARQRCFTNYLPGFNIPMLPRELSDDLCS
                     LVPNEKRPALVGFIETDLNGNLIKETTFTSAWVESKDRLAYDDVSDYLEGVENAWQPQ
                     SEETKQQIEWLHQFTQARIQWRAENALLFKEQGDYTFELNEDGSVKDIHVEYRRIANQ
                     MIEESMILANICCAKFLSQHAKTGVFNTHSGFDPKNYELVKSFLLQTLASDENRDELA
                     ERYSAERLATLEGYCQMQRDIQDYPEKFLELRLRRYLTFAEFKAEVAPHFGLGITDYA
                     TWTSPIRKYGDMVNHRLIKQVLLGKQSQAVEESVLSRLQEARRQNRLVERDIADWLYA
                     RYLAPMVEQAVEFECEIADVSRGGLRAKVIKNGAQIFVPFSSLHDNKEEMEYRQEELA
                     LYIKGEKAYQIGQAVKVKLTEVRLETRSIVGNII"
     gene            3221..3499
                     /locus_tag="PXA71_002242"
     CDS             3221..3499
                     /locus_tag="PXA71_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000738492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL5106309.1"
                     /translation="MKKLLAIATVFSLAACSTQTLELSPAKEAQYDRVQHFFVSGLAQ
                     KQEIDAAKICNGADKVGKVETETTFFNGLLGTITYGIYSPRQIRVYCN"
     gene            3524..3820
                     /locus_tag="PXA71_002243"
     CDS             3524..3820
                     /locus_tag="PXA71_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bor family protein"
                     /protein_id="HDL5106310.1"
                     /translation="MKKLLAMSVLTALLTTACTTQTAHIGGKVTDNIKPTKSVTQSFF
                     IGGIGQEETLNVVEVCGSKDKVQQVETVLSGGDILLGLVTIGIYTPRTANVYCK"
     gene            complement(3873..4664)
                     /locus_tag="PXA71_002244"
     CDS             complement(3873..4664)
                     /locus_tag="PXA71_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDL5106311.1"
                     /translation="MGILTGKRILVTGLASNRSIAYGIANAMKQQGAELAFTYLNDKL
                     KPRVEEFAKEFGSDIVLPLDVATDESITECFTELSKHWEKFDGFVHAIAFAPGDQLDG
                     DYVNAATREGYRIAHDISAYSFVAMAQAARPFLNENAALLTLSYLGAERAIPNYNVMC
                     LAKASLEAATRVMAADLGKEGIRVNAISAGPIRTLAASGIKNFKKMLSAFEKTAALRR
                     TVTIDDVGNSAAFLCSDLASGVTGEVLHVDAGFSVMAMGELGDEE"
     gene            complement(4808..5581)
                     /locus_tag="PXA71_002245"
     CDS             complement(4808..5581)
                     /locus_tag="PXA71_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FNR family transcription factor"
                     /protein_id="HDL5106312.1"
                     /translation="MKIVSEPKTSGRHTCTIHCQNCSISQLCLPFTLNETELTQLDNI
                     IERKKPIQKSQVIFKLGDELRSLYAIRSGTLKAYTLSESGEEQITGFHLPGDLIGFDA
                     ITNMQHEGYAQALETSMICEIPFDILDDLAGKMPKIRHQIMRLMSNEIKSDQEMILLL
                     SKMNAEEKLAAFLYNLSQRYSARGFSAKEFRLTMTRGDIGNYLGLTIETISRLLGRFQ
                     KSGMISVQGKYIIINRMEELAELAGAIKPQQNIIAQTTA"
BASE COUNT         1604 a         1092 c         1166 g         1740 t
ORIGIN      
        1 ataagtatgg taagattaaa gcctgaatcg ggatattcag gcttaaaaat aatggtgcga
       61 ctagctggac tcgaaccagt gacccccacc atgtcaaggt ggtgctctaa ccaactgagc
      121 tatagtcgca ttaacggtgt gcattctatt ggaaaaagga acttagtgca atatgctttt
      181 ggtcgaatgc ttttatttta gacgcttttg ggtaaaaatt tgtttatctt cccaacggag
      241 catggttaaa tggcttcccc aagcacagcc ggtatcaagt gcatagatgt ttggacgagt
      301 gcatttgccc attaggcttg cccagtgacc aaagataatg tttttctgtg taaataacgg
      361 attatctaag tcaaaccaag ccagcagttc ttgaggggct tgttcaagcg gtaatttaca
      421 gtcaaaatct aaccgcttgt cggtgtagca aaaccgcata cgggtaaaca cattgatgat
      481 ataacgccaa cgttcaacac cttgcaaatc ttcactccag cgttcgggct tattctcata
      541 catttgggcg atgtagtccg cataattgtc actttgtagc accttttctg cctctttggc
      601 acaagctagg gtagttgcta aatcccactc agggctgatt cctgcgtgag tcagcaaaaa
      661 ttgatgtttg gggtgatgaa ttacaagcgg ttgatttctg agccaatttt gcaaatcgag
      721 ccgatcttta gcctcaaaaa tagcatcaat cttatcattt ggttttaccc gtttgatgcc
      781 aagcaagtgc aaatcgtggt tgcctagcac ggttttggca ttgtttgcag agtctttcac
      841 aaaacgtaaa caggctaaag agtcctcacc acgggcgact aaatcccctg ttaaaaagag
      901 ttcgtcttgc ttggggttat aattgacttt ttctaataaa agctgaaatt cgttaaagca
      961 accgtgtagg tcgcctacaa tataagttgc cattgtttct cctttgttcc cctaaagtta
     1021 taaacaagcg gttatatttt agagaaaatt tgcaaaatct catcaaaata taaccgcttg
     1081 aaatttaaat gatatttcct acgattgagc gggtttctaa gcgtacttcg gtgagtttca
     1141 ctttcaccgc ttgcccgatc tgataggctt tttcaccttt aatataaagt gcaagttctt
     1201 cttggcggta ttccatttcc tctttgttgt cgtgcaagct ggagaatggc acaaaaattt
     1261 gagcaccgtt ttttatgact ttcgcacgca agccaccacg ggaaacatct gcaatttcgc
     1321 actcaaattc gaccgcttgt tccaccattg gggcaaggta acgagcataa agccagtcag
     1381 caatatcacg ttctactaaa cggttttgac ggcgagcttc ttgtaaacgg cttaaaactg
     1441 attcttccac cgcttggctt tgtttgccaa gtaacacttg cttgattaaa cggtggttta
     1501 ccatatcgcc atatttacgg atgggtgatg tccaagtggc gtaatcggta atgcctagtc
     1561 cgaaatgcgg ggcaacttcg gctttaaatt cagcgaaggt taaataacgt cgtaaacgca
     1621 actctaagaa tttctctggg tagtcttgaa tatcacgttg catttggcaa tagccttcta
     1681 aggttgctaa acgctcggcg gagtagcgtt cggcaagctc atcacgattt tcatcgctgg
     1741 ctaaagtttg gagtaaaaat gattttacca attcataatt tttcggatca aaacctgaat
     1801 gggtattaaa tacaccggtt ttggcatgtt ggcttaagaa ttttgcacaa caaatattgg
     1861 caagaatcat tgattcttcg atcatttgat tcgcaatacg gcgatattca acgtgaatat
     1921 cttttaccga gccatcttca tttaactcaa aggtataatc gccttgttct ttgaatagca
     1981 acgcattctc ggcacgccat tgaatgcggg cttgagtaaa ttgatgtagc cactcaattt
     2041 gttgttttgt ttcttcagac tgaggttgcc acgcattttc cacgccttcg agataatcgg
     2101 aaacatcgtc gtaagccaag cgatcttttg attcgaccca agcagaggta aaggttgtct
     2161 ctttaatgag attgccgttt aaatcggttt caataaagcc aacgagggca gggcgttttt
     2221 cattcgggac aagcgaacag agatcgtctg agagttctcg aggtaacatt ggaatgttaa
     2281 agcccggcaa atagttggtg aaacaacgct ggcgagcggc tttttcaata tgggaatttt
     2341 ctgggatata agcggttggg tcagcaatcg ctaccactaa acgccagccg gttcgcttgc
     2401 cattttgctt aattggttcg atgaacagag catcgtccat atcttgcgtg cttgggctgt
     2461 caatagtggt aaagtaaaga tgagataaat cttcacgagc taattcatcg tgtaattcat
     2521 agtttttttc atttgcgacc ggttcacgag gctgttcgtg gcgggcaagt gtgacccacc
     2581 aaggggcaaa attatcagat tctttacaga taaattgggt aacttgagca aagaaaaaac
     2641 ggtcgtcacg caatgggtgc gtttttaatt gtgcaaccac ccagtcgcca ttttctaatt
     2701 tttcagtggc ttttttatgg gtatttgccg ggatagtttg cttaatgctt gggtgatcaa
     2761 ccgcaagttg caatttgccc tctttattca agcgaacttg ggcaataaat ctatccagca
     2821 ttggctcaag tagtgaatca atttctacct gttctttgtc gccatcacgt ttgactacgg
     2881 ctttcactga atcaccgtgc attacttttt tcatttccgc aggtggaata aaatagcttt
     2941 ttttatcgca ttctaaaaaa ccgaatgctt tgtctgaggc tttgacaacg cctgcgacat
     3001 attctttgct tgcttcaatt tgttgtttga gttgggctaa aaggggattg ttttgaaaca
     3061 taatttctca ttttaaaaat aaaaaaaggt gctatcgttg caccgaaaaa aacaatggca
     3121 ttataacgga tttgaaccaa gttcagcaaa taaatgctgt tgctataact tataaaggtt
     3181 ggtagaatat aatccattta aaaataatgg agacttttca atgaaaaaat tacttgcaat
     3241 tgcaacagta ttttctttag cagcctgttc tactcaaaca cttgaactat ctcctgctaa
     3301 ggaagctcaa tatgatcgtg ttcaacactt ctttgtttca gggcttgctc aaaaacaaga
     3361 gatagatgca gcaaaaattt gtaatggtgc agataaggta ggtaaggtag aaactgaaac
     3421 tactttcttt aatggcttgt taggtacaat tacttatggt atctattcac ctcgccaaat
     3481 ccgtgtatat tgtaactaat cctagtaatt taaggagttg aaaatgaaaa aattgcttgc
     3541 tatgtctgta ttaacagccc tgctgactac agcatgtaca acacaaactg cccatattgg
     3601 cggcaaagtt actgataata ttaaaccaac taagagtgta actcagtcgt tctttatagg
     3661 tgggattggg caagaagaaa cattgaatgt tgtagaggtt tgtggttcca aagataaagt
     3721 gcagcaggtt gaaacagtac tttcaggtgg ggacattcta ttaggtcttg tgactatcgg
     3781 tatttataca cctcgtactg caaatgtata ttgtaagtaa tattttatta aaaaaataac
     3841 ggactcaatt gagtccgtta tttttatagg aattactctt cgtcgcctaa ttcacccatt
     3901 gccattacgc tgaagccggc atcaacgtgt aacacttcac ctgttacacc agaggctaaa
     3961 tctgagcata agaaagctgc agagttacct acatcatcaa tagttacggt gcggcgtaaa
     4021 gcagcggttt tctcgaaagc agaaagcatt ttcttgaagt ttttaatgcc tgaagcagct
     4081 aatgtacgga tcgggccggc tgaaatcgca tttacacgaa taccttcttt acctaaatcg
     4141 gctgccatta cacgggttgc agcttctaaa gaggctttgg ctaagcacat tacattgtag
     4201 ttggggattg cacgctctgc acctaagtaa cttaaggtta aaagggcggc attttcattt
     4261 aagaaggggc gagcagcttg agccattgca acaaagctat aggcactgat gtcgtgtgca
     4321 atacgataac cttcacgggt tgcggcattt acataatcgc cgtctaattg atcgcccggt
     4381 gcaaatgcga tagcgtgaac aaaaccgtca aatttttccc aatgtttgct taattcagta
     4441 aagcactcag taatgctttc atcggttgct acatctaacg gaaggacaat gtctgagcca
     4501 aattctttgg caaattcttc aactcgtggt tttaatttat cgtttaagta ggtgaatgca
     4561 agttctgcac cttgttgctt cattgcgttt gcaataccgt aagcgatcga acggttgctt
     4621 gctaaacctg tcactaaaat acgtttacca gttaagatac ccataaaaat tcctctttta
     4681 tattgattgg ggcaaaattg tgtcgattat aacggatata ggaaaaacgg gcaaatggag
     4741 ttagcggctc atcggatcag aaatcccttt ttgaacgagg tttcaaaaag ggatttggta
     4801 agataaatta agcggtagtt tgagcaataa tattttgctg cggtttgatt gccccggcta
     4861 attcggctaa ttcttccata cggttaataa taatatattt tccttgtact gaaatcatac
     4921 cgcttttttg gaaacgccct aataaacggc tgatagtttc aatggttaaa ccaagataat
     4981 tgccgatatc tccacgggtc atagttagac ggaactcttt tgcagagaaa ccacgggctg
     5041 agtaacgttg ggaaagatta tacaaaaatg cagctagttt ttcttccgca ttcatttttg
     5101 agagcaatag aatcatttct tgatcgcttt taatttcatt actcatcaaa cgcataattt
     5161 gatggcgaat ttttggcatt ttgccggcaa gatcatctaa aatatcgaat ggaatctcac
     5221 aaatcattga ggtttcgagt gcttgagcat agccttcgtg ctgcatattg gtaattgcat
     5281 caaagccaat tagatcgcca ggtaaatgga aaccggtaat ttgctcttca ccactttcac
     5341 ttaaggtata ggcttttaat gttccagaac ggatagcata aagcgaacgc agttcatcac
     5401 ctaacttaaa aataacttgc gatttttgaa tcggtttttt acgctcaata atattatcta
     5461 gttgagttaa ttccgtttca ttaagagtaa aaggtaagca tagttggcta atactgcaat
     5521 tttgacaatg aattgtgcaa gtatgacgtc cgcttgtttt aggttctgat acaattttca
     5581 tccattcaac cttaaattag aa
//
LOCUS       DANLRW010000130         5598 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.131, whole genome shotgun sequence.
ACCESSION   DANLRW010000130 DANLRW010000000
VERSION     DANLRW010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5598
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.131"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(63..938)
                     /locus_tag="PXA71_002246"
     CDS             complement(63..938)
                     /locus_tag="PXA71_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5106313.1"
                     /translation="MWIWFTLLAAVAQAGRNAFQKQLSVNVPVLGVTLARFFYAVPLA
                     SGYLYFLYQYDDNLNIPHFPPLFFVYAIGAGLAQILATSLMVQLFHLKNYAIGVGLAK
                     SEAVWAALLGVLFFGVTISGIGWLGVVLGGVAIFLMTGSGNLRQLSWKTLFLGIASGL
                     CFALTSLWVREASLQLNSHYLLSAAWVLFSVISFEAVILVIYLALLQKETLIKFFRFP
                     KLGMLTSLFSFLGSFGWFNAMSLNHVAFVKTLGQVEIFFILGISYFVFKERLKIQDFI
                     GLILVVIAAILVVLG"
     gene            1046..1882
                     /locus_tag="PXA71_002247"
     CDS             1046..1882
                     /locus_tag="PXA71_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HDL5106314.1"
                     /translation="MLPHIYIGTGGYADTDLIGTLYPFGTAKEDFLFVYSQHYDTLEI
                     NSTFHAPIGQKAFEGMVQKAEGRLNFSVKLHQDFSHQRTATLDQAQLFLNALAPFTAE
                     GLLANLFVQFPTQFERMPLNRRYLAELCQWFADYPLAIEFRHPSWHIPAVFDTFAKSS
                     NLIWCNVDYPQNIGLPAFHFFANQRTAYLRLHGRNPNWWKGQSAAERHDYRYSDEELK
                     GLAELLFSRRTEFDRLYLYFENTTKSHAFYNIQTLKGFLAEKGFQIKPVPENLLGQQS
                     LF"
     gene            complement(1957..4809)
                     /locus_tag="PXA71_002248"
     CDS             complement(1957..4809)
                     /locus_tag="PXA71_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HDL5106315.1"
                     /translation="MVQAVSFSHFFAIHYFYFFLHKTKGQCTAKPLFSILLFHLFPKN
                     SAKFLLFFYFLVLMVLYSNEVANGKLLITGGTNLNGTLSAEGTSEIILSGRPTPHAYD
                     KVANKEVLIEGDWINRSFNATIFAAKDNGKLEISRNVANINGNFNLTDNATAQIGFTQ
                     GTSQACIRSDRTGVATCNINATLSETDLNSWERTKVAGNVSLADNSTFSLGSKADLTG
                     SITAQESTKVQLNDGSIANLTGLSTTGIFNGANGSTVNLSGVWTTLTNTVVDVLNVAN
                     GSQIHLNTPTATKQNTLTANTLTGNGIFKFVADLTKTASDIVTIKDTASGQFSIEIST
                     NGSAHSAQKIKLFETTNEEDFSLNLANEVRSGEYRYHLLKEGNVYYLNPEKEEEPKIT
                     QKGPSETADPLPEYTGDIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNG
                     NAHLIASELTAQTNAVLGVTTVLDHVIHSEGTQKQNTLTANTLTGNGIFKFVADLTKT
                     ASDIVTIKDTASGQFSIEISTNGSAHSAQKIKLFETTNEEDFSLNLANEVHSGEYRYH
                     LLKEGNVYYLNPEKEEEPKITQKGPSETADPLPEYTGDIEYSEKGPGETADPLPEYTG
                     DIEHSEKGPGETADPLPEYTGDIEHSEKGSGETAEPLPKYNGNAHLIASELTAQTNAV
                     LGVTTALDHVIHSEGTQNWKVWSKTDYQTTEHRSAGYGFNQDANVIHLGLEKALDNQV
                     TLGMILSQSKARNNFDHYYSGKGRLTMLSMYAKKTWQNGVFVAIDTGFGKASNRLTYQ
                     ANTVKLDRSVFVTGLSIGKAWESANVNIIPSFSARYHHLSSAGNQLVDAKIETNAVDL
                     LALQAGLSINKTLELNGLQIKPEIGSYFVDASHGKLRTRFNNLQIEQQMGRYFKQEAG
                     ISANYRNINAGIQAGFLTGNTLNKQRYISFKVTYEW"
     gene            complement(4857..5534)
                     /locus_tag="PXA71_002249"
     CDS             complement(4857..5534)
                     /locus_tag="PXA71_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5106316.1"
                     /translation="MNSIIRKEWFTASEVAGMGNLPEQPSNVTRRATKNNWLKRQIEG
                     KRGVAFEYHYSSLPISVQQELGFAQTAVKEEPRTLVAAQTADEMERVPFYNVQASAGF
                     GAFNSEVYAPDDYIGLSKRWLDVRGFYLSYLAFITASGDSMYPTISDGDMLLVNRATT
                     QPKDGKIYVFRQGEQLWVKRVQGIMGGIRLISDNKELYSPIDVIFDETLDFEVIGQVV
                     YIGHEMI"
BASE COUNT         1585 a         1197 c         1107 g         1709 t
ORIGIN      
        1 attggttttg cgtgggctta cgcccaccct acaaagctag ataaaaaacg taaaaatccg
       61 atctagccca gcaccaccaa gattgcggca atcactacta aaatcagccc tataaaatct
      121 tgaattttaa gccgttcttt aaacacaaaa taggaaatac cgagaataaa gaaaatttcc
      181 acttgtccaa gcgtttttac aaaggcaacg tggttcaggc tcattgcatt gaaccaaccg
      241 aatgagccga gaaatgaaaa caggctggtc aacataccta attttggaaa acgaaagaat
      301 ttaatcagtg tctctttttg gagaagagct aggtatataa ccaatatcac tgcctcaaag
      361 ctaatcacgc taaaaagtac ccacgccgct gaaagcaaat agtggctgtt gagttgcagg
      421 cttgcctctc gcacccaaag tgatgtgagg gcgaaacata aaccgctggc tatgccgaga
      481 aagagtgttt tccacgaaag ttggcgtaga ttaccgctgc cggtcattaa gaaaatcgcc
      541 actccaccta gtaccacgcc aagccagcca atgccactga tggttacacc aaaaaataac
      601 acgcccagta aagccgccca tactgcctcg cttttcgcca gcccgacacc tattgcataa
      661 ttttttaagt gaaaaagttg caccattagc gaagttgcca gaatttgagc caacccagcc
      721 ccgatagcat atacaaaaaa cagcggtgga aaatggggaa tgttgaggtt atcgtcatat
      781 tggtataaaa aatagagata accgcttgcc aacggcacag catagaaaaa gcgggcgagc
      841 gttaccccca atacaggcac attgacgctt aattgctttt gaaaggcatt gcgaccggct
      901 tgagccacgg ctgccagcag agtaaaccaa atccacataa tgatgatgaa ataagaaaag
      961 atagccaaat cttactcttt tattctcagt ttgcaagcgg ttaaaaaacc attaaaattt
     1021 gcaaaaaatt gaaagaataa acacaatgct ccctcatatt tatattggca ccggcggcta
     1081 tgccgacaca gatttaatcg gcacgcttta cccattcggc actgcaaaag aggattttct
     1141 ctttgtctat agccaacatt acgacacgct ggaaattaac agcacattcc acgcccccat
     1201 cgggcagaaa gcctttgaag gaatggtgca gaaagcggaa ggtcggctga atttttcggt
     1261 gaaactgcat caagatttca gccatcaacg cacggcgact ttagatcaag cacaattatt
     1321 tcttaatgcg ttagctccgt tcaccgctga agggttattg gcaaatttat ttgttcagtt
     1381 cccaactcaa tttgaacgta tgccacttaa ccgccgttac cttgccgagt tgtgccaatg
     1441 gtttgcggat tatccgttag cgattgaatt tcgccaccca agctggcata ttccggcggt
     1501 gtttgatacc tttgcgaaaa gctctaatct gatttggtgt aatgtggatt acccacaaaa
     1561 tatcggctta ccggcatttc acttttttgc caaccaacgt actgcttatt tacgcttaca
     1621 tggtcgtaac ccgaattggt ggaaagggca gagtgcggca gaacgccacg attaccgcta
     1681 ttcagacgag gaattaaaag gcttggcaga attgcttttt agccgcagaa cggaatttga
     1741 caggctctat ctctactttg aaaacaccac taaaagccac gccttttata atattcaaac
     1801 cctaaaaggc tttttggcgg aaaaaggatt tcaaatcaaa cctgtgccgg agaatttgct
     1861 tgggcagcag agtttgtttt gatgggtaat ttacattgtt gaggagtaaa taaagggcca
     1921 tgccatttag taatggatag cccttaatct caatatttac cattcatatg taactttgaa
     1981 cgagatataa cgctgtttat ttagcgtatt ccccgttaag aaacctgcct gaattcctgc
     2041 gtttatattg cgataattag cggatatacc tgcttcttgt ttaaaataac gccccatttg
     2101 ctgctctatt tgtaaattat tgaaacgtgt tcttaatttc ccatggcttg catcaacaaa
     2161 atagctacct atttccggtt ttatttgcag gccatttagt tcaagcgttt tattaattga
     2221 cagaccagct tgaagagcga gaagatcaac agcgtttgtt tcgatttttg catctacaag
     2281 ttgattacct gctgaagata aatgatgata acgggcgcta aatgatggga ttatattcac
     2341 gtttgcagat tcccatgctt taccgatact aagccctgtt acaaatactg aacgatctaa
     2401 ttttactgta tttgcttgat aagttaagcg attgcttgct ttcccaaaac cggtatctat
     2461 cgcaacaaaa acaccatttt gccatgtttt cttcgcatac attgatagca ttgttaagcg
     2521 acctttaccg ctataataat ggtcaaaatt atttctcgct tttgattgag ataatatcat
     2581 accaagtgtg acctgattat ctaaggcttt ctctaatcct agatggataa cgttcgcatc
     2641 ttggttaaat ccatatccgg cagagcgatg ctctgtcgtt tgataatctg ttttagacca
     2701 tactttccaa ttttgggtcc cttccgaatg aattacatga tctaatgctg tagttacacc
     2761 taatacagca ttagtttgcg cagttaactc ggatgcgatc aaatgtgcat ttccattgta
     2821 tttaggtaat ggctcagcgg tttcacccga tcctttttct gaatgctcaa tgtctcctgt
     2881 gtattcaggt aacggatcag cagtttcacc cggccctttt tccgaatgct caatgtctcc
     2941 tgtgtattca ggtaacggat cagcagtttc acccggccct ttttcagaat actcaatatc
     3001 cccggtgtat tcaggtaatg ggtcagcggt ttcacttggc cctttttgag taattttagg
     3061 ttcttcctct ttctctggat tgaggtaata cacattccct tctttgagta aatggtagcg
     3121 atattcgcct gagtgcactt catttgctaa attaagagaa aagtcttctt catttgttgt
     3181 ttcaaataat ttaatctttt gggctgaatg ggcgctacca tttgtgctaa tttctatcga
     3241 aaattgaccg cttgcggtgt ctttaattgt gactatatcg ctcgctgttt tcgtcagatc
     3301 agcgacaaat ttaaatatgc cgttccctgt gagggtatta gcggtaagcg tattctgttt
     3361 ttgggtccct tccgaatgaa ttacatgatc taatactgta gttacaccta atacagcatt
     3421 agtttgcgca gttaactcgg atgcgatcaa atgtgcattt ccattgtatt taggtaatgg
     3481 ctcagcggtt tcacccgatc ctttttctga atgctcaatg tcgcctgtgt attcaggtaa
     3541 cggatcagca gtttcacccg gccctttttc agaatgctca atatccccgg tgtattcagg
     3601 taatgggtca gcggtttcac ttggcccttt ttgagtaatt ttaggttctt cctctttctc
     3661 tggattgagg taatacacat tcccttcttt gagtaaatgg tagcgatatt cgcctgagcg
     3721 cacttcattt gctaaattaa gagaaaagtc ttcttcattt gttgtttcaa ataatttaat
     3781 cttttgggct gaatgggcgc taccatttgt gctaatttct atcgaaaatt gaccgcttgc
     3841 ggtgtcttta attgtgacta tatcgctcgc tgttttcgtc agatcagcga caaatttaaa
     3901 gatgccgttc cctgtgaggg tattagcggt aagcgtattc tgttttgttg cagttggagt
     3961 gtttaaatgg atttggctac catttgcgac attcaagaca tctacaacag tgttggttaa
     4021 ggttgtccat accccagaaa gattaacggt tgaaccattg gcgccattaa atattcctgt
     4081 tgtactcaag ccggttaaat tagcaatact tccatcatta agttgaacct tagtggactc
     4141 ctgagctgta attgagccag ttaagtctgc tttactgcct aacgaaaatg ttgaattgtc
     4201 agctaaagag acattgccag ccactttggt tctctcccag ctgtttaaat cagtctctga
     4261 taaagtagcg ttaatattac aggttgctac gcctgtgcgg tcagagcgaa tacatgcttg
     4321 tgaggtacct tgggtaaaac caatttgagc ggtagcatta tctgttaaat taaaattacc
     4381 gttaatattg gcaacattac ggctgatttc aagcttgcca ttgtctttag ctgcaaagat
     4441 tgttgcgttg aacgatcggt tgatccagtc gccttcaatc aggacttctt tattcgctac
     4501 tttatcatag gcatgaggtg ttggacggcc cgataaaatg atttcgcttg taccttctgc
     4561 agaaagcgta ccgttgaggt tcgttccccc agtgataagc aatttgccgt ttgctacttc
     4621 attactgtat agaaccatta aaactaagaa ataaaagaat aataggaatt tggcggaatt
     4681 tttcgggaat aagtgaaaca gaagtattga aaacaggggc tttgcggtgc attgcccctt
     4741 tgttttatgt agaaaaaagt aaaaataatg aattgcgaaa aaatggctaa aactaaccgc
     4801 ttgtaccatt aaaacaacga aaaagtaaaa atgatttaag tagctttaaa tggcgtttaa
     4861 atcatctcgt gtccaatgta cacaacctgc ccgataacct caaaatctaa cgtttcatca
     4921 aaaatcacat caatagggct gtatagctct ttattatcgc tgattaagcg aataccgccc
     4981 ataatgcctt gcacacgttt aacccaaagc tgctcgcctt ggcggaacac ataaatttta
     5041 ccgtctttag gctgggtggt ggctcggttt accaatagca tatcgccatc actgatggtt
     5101 gggtacattg aatcacctga agcggtaata aatgcaagat agctcaaata gaagccacgc
     5161 acatctagcc atcgtttact tagcccaata tagtcatcag gggcatacac ctcgctattg
     5221 aaagcaccaa agcctgctga agcctgtaca ttataaaacg gcacacgttc catttcatct
     5281 gcagtttggg ctgccactaa tgttctaggc tcttctttta ctgccgtttg agcaaagcct
     5341 aactcttgct gcacgcttat tgggagagag ctgtagtggt attcaaaagc aacccccctt
     5401 tttccctcta tttgtctttt gagccaatta tttttggtag ctcttcttgt tacatttgat
     5461 ggttgttcag gtaaatttcc cattccagct acttcagatg ccgtaaacca ttcctttcta
     5521 attatagaat tcataaaacc ccttttgaat tcaagtggaa ttcaaaaaaa tttacaaaca
     5581 aattctcttg aaaatcaa
//
LOCUS       DANLRW010000131         5432 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.132, whole genome shotgun sequence.
ACCESSION   DANLRW010000131 DANLRW010000000
VERSION     DANLRW010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5432
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.132"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            68..1258
                     /locus_tag="PXA71_002250"
     CDS             68..1258
                     /locus_tag="PXA71_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000462687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HDL5106317.1"
                     /translation="MFSHIQAAPADSILGLGEAFKADSREGKINLGIGVYMTDEGKTP
                     IVKAVKEAEKRLLETENSKNYLTIDGVQAFNAATQALLFGEGAEVITSGRAKTAQSLG
                     GTGALRIAAEFIKRHTNAKNVWISTPTWPNHNGIFDAVGVNVKGYRYYNKETNGLDWE
                     NLIADLSQAEAGDVVLLHGCCHNPTGIDPTPAQWEQLAALSAEKGWLPLFDFAYQGFA
                     NGLEEDAYGLRAFVKNNRELLVASSFSKNFGLYNERVGAFTLIADNADDANRAFTQIK
                     SIIRVLYSNPSAHGASAVAVALADPDLKAQWIAELDEMRNRIKEMRSQLVQKLKEKGA
                     NKDFSFITEQNGMFSFSGLTPEQVDKLKDEFAIYAVRSGRINVAGITSKNIDALADAI
                     VKVL"
     gene            complement(1365..2666)
                     /gene="folC"
                     /locus_tag="PXA71_002251"
     CDS             complement(1365..2666)
                     /gene="folC"
                     /locus_tag="PXA71_002251"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDL5106318.1"
                     /translation="MNTLSIPKATDSLETWLSYLEQAHSKPIDMGLDRIRKVATELDL
                     LKPAPYVITVAGTNGKGSTCRLLEVTLLKAGFRVGVYSSPHLIHYNERVRINGEVLPD
                     ADHVQAFAKINAKKTASLTYFEFSTLSAFELFKQNQLDIVILEVGLGGRLDATNIIDP
                     SLAVIISIDIDHVAFLGDNREDIGREKAGIFRENIPVVIGEPDCPHSIKQIADSLNCH
                     AFYRGKDWQFEIKNNLFHWYSEEKSFTDLPIPLIPIPNAGTALAVLMQLPFEIDEKII
                     RQALNEAQMTGRFQTLTDTDFTHFSQPKPAAKVIIDVGHNPHAARYLADKLRELKQPN
                     QKIYAVFSALEDKDLSGIVEPLANIIDEWHCAGLDCWRGQTGEAVLAKLVNVLPNSTA
                     CSYENVAQASRVLFETANENDIVLVFGSFHTVADFMLWLET"
     gene            complement(2676..3572)
                     /gene="accD"
                     /locus_tag="PXA71_002252"
     CDS             complement(2676..3572)
                     /gene="accD"
                     /locus_tag="PXA71_002252"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HDL5106319.1"
                     /translation="MSWLDRILGRDSSSSSNAKSKVPEGVWTKCTSCEQVLYSEELQR
                     NQQVCPKCDHHMRIDARTRLLNLLDKDSAVEIAADLEPEDVLKFKDLKKYKDRLTAAQ
                     KQTGEKDSFIVLAGTLHNMPVVTASFNFEFMGGSMGSVVGAKFVKAAEKALAEKIPFI
                     CFSASGGARMQEALFSLMQMAKTSAILAKMKEQGVPFISVLTDPTLGGVSASLAMLGD
                     VNIAEPKALIGFAGPRVIEQTVREKLPEGFQRAEFLLEHGAVDMIVHRKEMRDTLSRL
                     CAKLTNQPTPFKVAELVVENAE"
     gene            3881..4663
                     /gene="mazG"
                     /locus_tag="PXA71_002253"
                     /pseudo
     CDS             3881..4663
                     /gene="mazG"
                     /locus_tag="PXA71_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991517.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
     gene            4731..>5432
                     /locus_tag="PXA71_002254"
     CDS             4731..>5432
                     /locus_tag="PXA71_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5106320.1"
                     /translation="MSKILLIDDDIEFTELLTELLSLEGFKMKVVHNGLEGLNELESN
                     QYDLVLLDVMMPVLSGVKTLKRIRQKYSLPVLMLSARDDQIDRILGLELGADDYVPKP
                     FNNRELVARMKAILRRTTSRPASTDHSEQNYTENISKSLQFAGVELHSGRQQAYYQGC
                     DLDLTGTEFALLQMLMRNSGEILSRELLSLKILGKNLTPYDRAIDMHISNLRKKLPER
                     EDGLPWFKTLRGRGYL"
BASE COUNT         1681 a         1059 c         1105 g         1587 t
ORIGIN      
        1 taaatctgca atttaatcgt ataaattcac tgtttatttt tcattttgat gaggaactcc
       61 aatgtcaatg tttagtcaca ttcaagctgc tccggcagac tcaattttag gcttaggtga
      121 agcgtttaaa gcagatagcc gtgaaggtaa aatcaacctt ggtatcggtg tttatatgac
      181 cgatgaaggc aaaaccccga ttgtcaaagc ggtaaaagaa gcagaaaaac gtttattaga
      241 gacggaaaac agtaaaaatt atttaaccat tgacggtgtt caagcattca atgcggcaac
      301 gcaagcgtta ttatttggcg aaggggctga agtgattacc tcaggtcgtg ctaaaactgc
      361 acagagttta ggtgggacag gggcattacg cattgcggcg gaatttatca aacgtcatac
      421 gaatgcgaaa aatgtatgga tttcaacccc gacttggcca aaccataacg gcatttttga
      481 tgcagtaggc gtgaatgtaa aaggctatcg ctactacaat aaagagacta acggtttaga
      541 ttgggaaaat ttaattgccg atttaagcca agcggaagcc ggagatgtgg tgttattgca
      601 cggttgctgc cacaacccga ccggaattga cccaacacct gcacaatggg aacagttagc
      661 agcattatct gccgaaaaag gctggttgcc gttatttgac tttgcttatc aaggctttgc
      721 aaacggttta gaggaagatg cttacggttt acgagctttt gtgaaaaata accgtgaatt
      781 gttggtcgca agctcattct cgaaaaactt tgggttatat aacgagcgtg tcggtgcatt
      841 taccctaatt gcagataatg ctgatgatgc caaccgtgct ttcactcaaa tcaaatcgat
      901 tattcgtgta ctttactcta acccatctgc tcacggtgca agtgcagtag cagttgcatt
      961 ggctgatcct gaccttaaag cacaatggat tgcggaatta gatgaaatgc gtaaccgtat
     1021 taaagaaatg cgtagccaat tagtgcagaa attaaaagaa aaaggggcaa acaaagactt
     1081 ctctttcatt actgagcaaa atggtatgtt ctcattcagt ggcttaacac cggagcaagt
     1141 ggataagtta aaagatgagt ttgcaattta tgctgtgcgt tcaggcagaa tcaatgtagc
     1201 aggcattacc agcaaaaaca ttgatgctct tgccgatgcg attgtgaaag tgctttaatt
     1261 aaaccttaaa gatatataga ggcataagcc tgagtgcttg tgcctctttt ttatctttta
     1321 ggtacaagtg tggacacttg caccaacgtt gattattcgt agaactaggt ttccaaccaa
     1381 agcataaaat ctgctaccgt atgaaatgag ccgaacacca gcacaatatc attttcgttg
     1441 gctgtttcaa acaatactcg gcttgcctgt gccacatttt catagctaca agcggttgaa
     1501 tttggcaaaa cgtttaccaa tttcgctaac accgcctcgc ctgtttgtcc acgccaacaa
     1561 tctagccctg cacaatgcca ttcatcaata atattagcta atggctcgac aataccggat
     1621 aaatccttat cttctaacgc actaaacacc gcatagattt tttgatttgg ttgctttaac
     1681 tcccgcagtt tgtcagctaa ataacgtgct gcgtgtgggt tatgccctac atcaataatt
     1741 acttttgcag ccggtttagg ttgagaaaaa tgagtaaaat cggtatccgt cagggtttga
     1801 aaacgccctg tcatttgagc ttcatttaag gcttgtcgaa taatcttttc atcaatttca
     1861 aatggcagtt gcattaatac tgctaatgcg gtgccggcgt ttggaatcgg aataagcggg
     1921 attggtaaat cggtaaagga tttttcttca gaataccaat gaaacagatt attcttaatt
     1981 tcaaactgcc agtctttacc ccggtaaaaa gcgtgacaat ttaacgaatc agcaatctgt
     2041 ttaatcgaat gagggcaatc aggctcgccg atgacaaccg gaatattttc acggaaaatg
     2101 ccggctttct cacgcccgat gtcttcacgg ttatcgccta aaaatgcaac gtggtcgata
     2161 tcaatcgaga taatcacggc aaggcttgga tcaataatat tagtggcatc taatcgccca
     2221 cctaatccga cttctaaaat cacaatatcg agctgatttt gtttgaatag ctcaaatgca
     2281 gacagcgtac taaactcaaa ataagtgagt gaagcggtct tttttgcatt aatttttgca
     2341 aatgcttgga cgtggtcggc atcaggtaat acttcgccgt taattcgcac ccgttcatta
     2401 tagtgaatta agtgcggtga agagtaaaca ccaacccgaa atccggcttt taataaggta
     2461 acttctaaca aacggcaggt cgaacccttg ccgttagtac cggcaacggt aatcacataa
     2521 ggggcaggct tgagtaaatc cagctctgtt gcgaccttac gaatacgatc taagcccata
     2581 tcaatcggtt tagaatgggc ttgttctaaa taggaaagcc acgtttccaa agaatccgtg
     2641 gctttaggta tgcttaatgt attcattcag atattttatt ctgcgttttc tacaaccaat
     2701 tccgccactt taaacggcgt tggttgattg gttaattttg cacaaagacg ggaaagggta
     2761 tcacgcatct ctttacgatg cacgatcata tcaactgccc cgtgttctaa taagaactcg
     2821 gcacgttgga aaccttccgg cagtttttca cgtacggttt gctcaattac acgaggacca
     2881 gcaaagccga ttagggcttt tggctcagca atattcacat cgcccagcat tgccaaactt
     2941 gcggaaaccc cacctaaagt tgggtcggtt aatacagaaa taaacggtac gccctgctct
     3001 ttcattttgg ctaaaatcgc actggttttt gccatttgca ttaaagagaa taacgcctct
     3061 tgcatacgag ccccgcccga tgccgaaaaa cagataaacg gaattttttc agctaaagct
     3121 ttttccgcag ctttcacaaa ttttgcacct actacagacc ccattgaacc gcccataaac
     3181 tcaaagttaa aggaggccgt aaccaccggc atattatgca atgtaccggc aagcacgata
     3241 aaagaatctt tctcaccggt ttgtttttgc gcggcagtta aacgatcttt atatttcttt
     3301 aaatctttaa atttcaacac atcttccggc tctaagtcgg cagcgatttc gaccgcagaa
     3361 tctttatcta acaaattcaa taaacgggtg cgggcatcaa tacgcatatg atgatcgcat
     3421 tttggacaaa cctgttggtt gcgttgtaat tcttcgctat agagaacttg ttcacaactt
     3481 gtgcattttg tccatacacc ttccggcact tttgattttg cattgcttga tgatgaagag
     3541 tctctaccta aaattctgtc taaccagctc attattattc cttttggatt gagttgttgg
     3601 gttcactaaa tggttgctat taaagcataa tttatcggtt tttgatatgt tttcttgaca
     3661 tatcagatca ctaactatgt gtataagttc gataaaaaaa cgcaatcaga agaatgatta
     3721 acatcaccac aatttgaatt aagcgttttt tggttaattt ttccgctgcc attgctctgc
     3781 tcatacttaa taaatttccg cattataagc gaaaaagcac gggctatgta gaatttgcaa
     3841 aattttgatc aaaaataacc gcttgtaaaa aggaaatact atggcaacca ttgaacaatt
     3901 tcttgaggtt gtaaaccaac ttcgtcaccc tgaacacggc tgcccgtggg atctcaaaca
     3961 gaattttgac acgatgttcc ccacttattg gaagaaacct acgaagtagc ggaagcgatt
     4021 cacacccaag atcgcactgc cttgcgtgaa gagttaggcg atttattact gcaagtggta
     4081 tttttaagcc aattagcgaa agaggaaggc agtttcactt ttgatgatgt agtaacggat
     4141 attcacgata aactgattta ccgccaccct cacgtttttg gtgatgtgaa agctactaac
     4201 agcgaagagg ccttacaaag ttgggaagca caaaaagcga atgatgcaaa acaccgtagc
     4261 caagattcta tttttagatg atttaccttt tgctttgcct gctcttaccc gtgcaaataa
     4321 gctacaaaaa cggtgtgcaa aagttggatt cgattgggat aaccctcacg atgtgctggc
     4381 aaaagtcgaa gaagaactcg atgaagtcaa agcagaaatc gcacaatatc cggctcgctc
     4441 catcgagctt gctgaagaat taggcgatct cttgtttgcg attgtaaatt tatgccgcca
     4501 ttatcatacc gatgccgagg aaattttacg caatgcaaat ctaaaatttg aacatcgctt
     4561 tcgaaaagtt gaaaaatctg tgaaaaaatc gggaagaact gtaaaagaat gtaaattaga
     4621 agaactagat gtaatttggc acaaaataaa agtggtaaaa taaaaagcac caattgttat
     4681 actaattttt acctttgtaa agttagtttt aattttatag ggaatatttt atgtcaaaaa
     4741 tcttattaat agatgatgat attgagttta ctgagctact aactgaatta ctttcattag
     4801 aaggatttaa aatgaaagtt gtgcataatg gtttagaagg cttaaatgag ttagagtcta
     4861 atcaatatga tttagtatta ctagatgtga tgatgccggt attaagtggc gtgaaaacat
     4921 taaaacgtat acgacaaaaa tactcattac ccgttttaat gttaagtgca agagatgatc
     4981 aaattgatag aatcttaggt ttagaattag gggctgacga ttatgtaccg aaacctttta
     5041 ataatcgtga actagtcgct agaatgaaag cgatacttcg aagaacaacc tctcgcccag
     5101 cttcaacaga ccattctgaa cagaattata ctgaaaacat ctctaaatca ttacaatttg
     5161 ccggagttga attacattca ggacgtcagc aggcttatta tcaaggatgt gatcttgatt
     5221 taacggggac tgaatttgca ttattacaaa tgttaatgcg aaactcaggg gagattttgt
     5281 ccagagaatt attgagttta aaaattttag ggaaaaattt aacgccttat gatcgtgcaa
     5341 ttgatatgca tatttctaat cttcgtaaaa aattacccga acgggaagat ggattacctt
     5401 ggtttaaaac cttaagaggt cggggttact ta
//
LOCUS       DANLRW010000132         5428 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.133, whole genome shotgun sequence.
ACCESSION   DANLRW010000132 DANLRW010000000
VERSION     DANLRW010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5428
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.133"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            344..1348
                     /locus_tag="PXA71_002255"
     CDS             344..1348
                     /locus_tag="PXA71_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDL5106321.1"
                     /translation="MPGDANKIISNGTSAGGALSTLLGASADHYDYEPYLKEAGALNA
                     SDKIFAVSAYCPITNLENADMAYEWQFNGVNEYSRIDMSRLNAAEFNDRSKPKPKPKI
                     EGSLNEAEIKVSNELAERFPTYLNSLHLVDEKGNPLTLDPKGNGSFKDYLSEVVKTAA
                     NKAYRGLVQDSEEQKAFQQISWLSFEKGKVSSVDWFGYVFSDKRMKSPPAFDALNGSS
                     GENNLFGTDTENNRHFTLYSAERSANKDLNLADPQIVKRMNPMHYLDNPNAAEHWRIR
                     VGTADRDTSLAISAILAIKLQMAGKNVNYETPWNVPHSGDYDVNELFLWADELVKGKK
                     "
     gene            1403..3253
                     /locus_tag="PXA71_002256"
     CDS             1403..3253
                     /locus_tag="PXA71_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDL5106322.1"
                     /translation="MQVKKFSQKYINWVLKLGRLKASLLGFFMVALSAILIQSSLTYL
                     FIGRVVVVDILRSIAFGLISAPFVLYFFTLLVEKLEISRLKLEKAVRDLEELREQDAY
                     LNAKLEKNSRDKSILMATISHELRTPLNGIIGLSQILLDDKTTEKQQEYLKTINMSAT
                     ALAHIFGDIIDLEKIDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPD
                     LPKYIYIDHARLSQILWNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPE
                     KDQRKIFDMFYQAENSKEKKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLTV
                     QAESTETKPIFAIQQHSLKVLLVEDIEMNVVVARAMLEKIGCVVDVAMSGEETFQHFA
                     QNSYDLILLDIQLPDTTGFEIAQQLRLQYENEEIDYLPLLVALTANVIQSRQEYQAQG
                     MDDVLHKPLSLDELMRCLNQHFGDDFLQKNEEKQPLVERGSENLPYSITILNELIGVM
                     GKENVLANMDLFADLMPTYLANLQRYLSDWQTTNSVESRKLTADEAHKIKGALASVGL
                     HQLQQTAQLAQSDNGEQWEQNIAHWVEMICSKWQMDLQLAKEYVRSKGDI"
     gene            complement(3349..3903)
                     /locus_tag="PXA71_002257"
     CDS             complement(3349..3903)
                     /locus_tag="PXA71_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDL5106323.1"
                     /translation="MKSQIYYDYYPSPIGQLLLLATEEGLIYIELGQEQQTTSLDNFL
                     SAQAASGQILEIFCKTKEILDRYFAGEPLDFQQLDFLAPQGTPFQQSVWKILREIPYG
                     QTTTYGEIATQLGKPSAMRAVGGAVGRNPISILVPCHRVLGKNQALTGFGGGLPNKRF
                     LLQLEDITYKDKGIEFVKPKTKKW"
     gene            complement(3970..>5428)
                     /locus_tag="PXA71_002258"
     CDS             complement(3970..>5428)
                     /locus_tag="PXA71_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="outer membrane protein transport protein"
                     /protein_id="HDL5106324.1"
                     /translation="TLIASLVAFSSAGASAAAFQLAEISTSGLGRAYAGNAAVADNAS
                     VVATNPALMTLFKQTEISAGGIFVDADVNIDGKLNATGADASHKNVIPTAIVPNAYIV
                     SPINERLSIGGGVNVNYGLISEFDPNYSAGFLGGRTSLSAVNVNFSAAYDLGYGFVLG
                     AGLNAVHAKAELGRFLGAGAARFAPAKQFLEDKKVQVQSAIQGLKALEAGIAAGNTAL
                     EAQKTQVLAQVNGLLKSQNLNQTITNSAQLERLVNGIQNTNASSTIHKLKGDKWALGW
                     NVGLVYNINERNRLGFTYHSEIDLKFKGKYSNTVPVVIPKMVDTITGGAEIDGTLRLR
                     LPAFWEVSGYHKLTDKLAAQYSYKRTDWSKFQSLEAYDMQGNRLLHKTENFNDSQRIA
                     LGLSYDVNEMLTLRTGVAFDESASVTHPSISIPDTDRAWYSVGATVRFTPNLSADVGY
                     SHLRGSNLTFSEDGLATFKSKARANLYGLNVNYKF"
BASE COUNT         1702 a          986 c         1160 g         1580 t
ORIGIN      
        1 gacttcatct tttgataaac tctttgcgat ttaaacagaa aatatattta gaatgtaaac
       61 aaacatgagt cgattttatg ttcaaagagc tgtaataaga cggaataatg tcagaccaag
      121 atagatactt tcaagtaaaa tcaagcataa aaatgatttt cagactttac aaatctgaaa
      181 gaatgtgtaa gatcaggatt gtccgaaatt cggatggaaa atcccagtgg atgtattggc
      241 tggatacatc ataataacta tgtatttgtg aatgttattt gaatgattct acgtagttga
      301 ttcaaaatca gcagtgcggt atctgcatgc taatgatgaa aaaatgccgg gcgatgcaaa
      361 taaaattatc tctaacggca ccagtgccgg aggagcatta tctactttgt taggagcttc
      421 agctgatcat tacgactatg agccttattt gaaagaggcg ggggcattga atgccagtga
      481 caaaattttt gcagtttctg cctattgccc aattaccaac cttgaaaatg cggatatggc
      541 gtatgaatgg caatttaatg gtgtcaatga atatagccga atcgatatga gtcgattaaa
      601 tgcagcagag tttaacgacc gctcaaaacc aaaaccaaag ccgaaaattg aaggctcgtt
      661 aaatgaggcg gaaattaaag tttctaatga attagcagaa cgctttccga cttatttgaa
      721 cagtttgcat ttggttgatg agaaaggcaa tcctttaaca cttgatccaa aaggcaacgg
      781 ctcgtttaaa gattatttat ctgaagtggt aaaaacggct gcaaataaag cctatagagg
      841 tttagttcaa gatagcgaag agcaaaaagc ctttcaacaa attagttggc tttcatttga
      901 gaaaggcaaa gtcagcagtg tggactggtt tggttatgtg ttttcagata aacggatgaa
      961 atcaccacct gcatttgatg cgttaaatgg aagttcgggc gagaataatt tatttggcac
     1021 agacacggaa aataaccgcc attttacgct ttatagtgcg gaacgttctg ccaataaaga
     1081 tctcaattta gccgatccgc aaatcgtgaa acggatgaac ccgatgcact atttggataa
     1141 cccaaatgct gcggaacatt ggcggattag ggtgggaacg gcagatagag atacctcgct
     1201 ggcaatttct gcaatcttag caataaaact gcaaatggca ggcaaaaatg ttaattatga
     1261 aaccccgtgg aatgtacccc attcaggtga ttatgatgta aatgaattat tcctatgggc
     1321 tgatgagcta gtcaaaggca aaaagtaaaa aatagagtaa aataaagcag atctgatggt
     1381 ctgctttttg ttttgaggtc gtatgcaagt taaaaaattt agccaaaaat atattaattg
     1441 ggtattaaag ctagggcggt taaaagcttc tcttttaggc ttttttatgg tcgctctttc
     1501 ggcaatttta attcaaagta gcttaaccta tctttttatt gggcgagtag tcgtggtgga
     1561 tattttacgc tccatcgctt ttggtttaat ttctgcgcct tttgtgcttt atttcttcac
     1621 gttattggtg gaaaaacttg aaatatctcg cttgaaatta gaaaaagcag taagagattt
     1681 ggaagaactc cgggaacaag atgcctatct taacgctaaa ttagaaaaaa acagccgtga
     1741 taaaagcatt ttaatggcga ccattagtca cgaacttcgt actcccctta atggaattat
     1801 cggcttgagc caaattttgt tagatgataa aaccaccgaa aaacagcaag aatatctaaa
     1861 aactatcaat atgagtgcca ctgcattggc tcatattttt ggcgatatta ttgatttaga
     1921 aaaaattgat agtagccgaa ttgaattggt aagaaaagag gtggaatttg aacaactcat
     1981 tcacgatatt gctaattttg ggcattttat ggcgggcaat aagcagatta attttgaagt
     2041 gaagtatccg cctgatttgc cgaagtatat ctatatcgac cacgcacgct tgagccaaat
     2101 tttatggaat ttgatcagca atgcggtgaa atttacccct gcaagcggtc gaattttgct
     2161 ggaaatttac caattagata aagaacagtt tagctttgcg gtgacggatt caggcatcgg
     2221 tattccggaa aaagatcaac gcaaaatttt tgatatgttc taccaagcgg aaaactctaa
     2281 agagaaaaaa gcgcaaggta gcgggattgg cttatcggtc tcgaaacgca ttgcgaagct
     2341 aatgggcggt gatttggtgg tggcaagcca agaaaatcaa ggctcaactt ttaccctcac
     2401 tgtgcaggca gaaagcacgg aaaccaagcc gatatttgct attcagcaac attcccttaa
     2461 ggtgctattg gtagaagaca ttgaaatgaa tgtggtggtt gcccgagcaa tgttggagaa
     2521 aatcggttgc gtggttgatg tagcaatgag tggtgaagaa acgttccaac attttgcaca
     2581 gaacagctac gatctgattt tacttgatat tcaactgccg gataccaccg gttttgaaat
     2641 tgcacagcaa ttaagattgc aatatgaaaa cgaggaaatt gactatttac cgctgttggt
     2701 tgctttgacg gcaaatgtga tccaaagccg gcaggagtac caagcacaag gtatggacga
     2761 tgtgctacac aaaccgctct ctttagatga attaatgcgt tgtctcaacc aacattttgg
     2821 agatgatttt ttgcaaaaaa atgaagaaaa acagccgctt gtagagagag gttctgagaa
     2881 tttaccttat agcattacaa ttcttaatga attgattggg gtaatgggga aagagaatgt
     2941 gcttgccaat atggatttat ttgctgattt aatgcccact tatttggcaa atttacagcg
     3001 ttatttaagt gattggcaaa ccacaaattc tgtggaaagc cgtaaattaa cggcggacga
     3061 ggctcataag attaagggag cattagcatc agtcggatta catcagctac aacaaactgc
     3121 tcagcttgct caatccgata acggcgagca gtgggagcaa aatattgcac actgggtgga
     3181 aatgatttgt tccaaatggc agatggattt gcaattagct aaggaatatg ttagaagcaa
     3241 gggggacatt tagtaaattt gaaatgttac gatggtgcaa gcgtccacgc ttgtaccaat
     3301 tttaatatct gaagcacaag cgtggacgct tgtgctatca aaacgtattt accatttctt
     3361 ggttttcggt tttacaaatt caatgccttt atctttatag gtaatatctt ccagctgtaa
     3421 tagaaaacgc ttattcggca agccaccacc gaatccggtt aaggcttgat ttttccctaa
     3481 taccctatgg caaggcacta aaatcgaaat cgggtttcgc ccaactgcac cgccgacggc
     3541 tcgcatcgca cttggcttgc ctagttgggt ggcaatttcg ccataagtag tagtttgccc
     3601 gtaagggatt tcacgcaaaa ttttccaaac tgattgctgg aatggagtgc cttgcggggc
     3661 aagaaaatcc aactgctgaa aatccaatgg ctcgccggca aaatagcggt ctaaaatttc
     3721 tttggttttg caaaaaattt ctaaaatctg accacttgca gcttgagcgg aaaggaaatt
     3781 atcaagcgag gtggtttgtt gctcttgccc tagctcaatg taaatcaagc cttcttctgt
     3841 ggctaaaagc aataattgcc cgatagggct tgggtagtaa tcgtagtaaa tttgagattt
     3901 catgttttta tgccaataaa aaaagaggtg taattgattt tacacctctt taaaccttaa
     3961 ttcatcaaat tagaatttgt agtttacgtt taaaccgtaa agatttgcac gagctttgct
     4021 cttgaatgtg gctaaaccgt cttcagagaa ggtcaggttg ctaccacgaa gatgtgagta
     4081 acctacatca gcagataggt ttggcgtgaa acgcacggtt gcacctacag aataccaagc
     4141 acgatcagtg tccggaattg agattgatgg atgagttaca cttgcacttt catcaaatgc
     4201 tacacctgta cgcaatgtta gcatttcatt cacatcataa gacaagccta atgcaatacg
     4261 ttgagagtca ttaaagttct cggttttgtg caataggcgg ttaccttgca tatcataagc
     4321 ttctaggctt tggaatttgc tccagtctgt gcgtttatag ctgtattgtg cagcaagttt
     4381 atcggttagt ttgtggtaac ctgacacttc ccagaatgcc ggtaggcgta atcttagtgt
     4441 accatcaatc tctgcaccgc cggtaatggt atctaccatc ttaggaataa ctacaggaac
     4501 ggtattagaa tatttgcctt taaatttaag atcaatttca gagtggtaag taaaacctaa
     4561 acggtttctt tcattgatat tataaaccaa gccaacattc caacccaatg cccatttatc
     4621 gcctttaagt ttatgaattg ttgaacttgc attggtattt tgaatgccat taaccaaacg
     4681 ttctaattga gcagaattcg tgatggtttg gtttaaattt tgagatttta ataaaccgtt
     4741 tacttgagct aatacttgtg ttttttgagc ttcaagagcg gtattacctg ctgcgatacc
     4801 tgcctcaaga gcttttaaac cttgaattgc actttgtact tgtactttct tgtcttccaa
     4861 aaattgttta gctggagcaa aacgtgccgc accggcacct aagaaacgtc ctaattctgc
     4921 ttttgcgtgt actgcattca aacctgcccc taatacaaaa ccataaccta aatcataagc
     4981 cgcactaaaa ttaacattca cagcacttaa tgatgtacga ccacctaaga aaccagcaga
     5041 atagttaggg tcaaattcag atatcaaacc ataatttaca tttacgccac caccaataga
     5101 aaggcgctca ttgataggtg aaacgatata agcatttgga acaatagcgg taggaatgac
     5161 atttttatgt gaggcatctg cacctgtagc attgagcttt ccatcaatat ttacatcagc
     5221 atctacgaaa ataccaccgg cagaaatttc ggtttgttta aataacgtca ttaacgcagg
     5281 gttggttgca acaacagaag cgttatcggc tacagcggca ttacctgcgt aagctctacc
     5341 taaaccggat gttgaaattt cagctaattg gaatgcggca gcagatgcac cggctgagct
     5401 gaatgctact aatgaagcga ttaaagtt
//
LOCUS       DANLRW010000133         5356 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.134, whole genome shotgun sequence.
ACCESSION   DANLRW010000133 DANLRW010000000
VERSION     DANLRW010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5356
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.134"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            20..1138
                     /gene="rnd"
                     /locus_tag="PXA71_002259"
     CDS             20..1138
                     /gene="rnd"
                     /locus_tag="PXA71_002259"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HDL5106325.1"
                     /translation="MESLIHYQWVETNEQLEAVCEQARKTKVVALDTEFIRTRTYYPI
                     LGLIQLFDGQQVSLIDPNTISDFSPFVSLLADKNIIKVLHACSEDLEVFEYQFKQLPE
                     PMLDTQVMAAFAGIGISMGFAKLVSHYLNIELDKGASRTDWLARPLSAEQLQYAAADV
                     WYLLPVYEKLAQALTKSTWQSAVAEECVALLKKAKQPINKEKAYKNIANAWRLNREEL
                     AILQVLAKWRIEEAQKRNLALNFVVKEASLVQIAKSCPKHTSSLLEFMHPNEVRIHGK
                     KILWLVEQGKAIESNDYPELIQRLVDEKGYKYYMQAMLQKLLEIQPLDIVPELVASKR
                     QLNQLFKWYIDGKPSEKIPELLIGWRKPFGEQLLSVLS"
     gene            1195..1677
                     /gene="lrp"
                     /locus_tag="PXA71_002260"
     CDS             1195..1677
                     /gene="lrp"
                     /locus_tag="PXA71_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005695827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HDL5106326.1"
                     /translation="MENKKPPKALDAIDLKILNELQRNGKISNIELSKRVGLSPTPCL
                     ERVKRLEKNNVIMGYKALLNPELLDAPLLVIVEITLVRGKPDVFEEFNKAIQQLDEIQ
                     ECHLVSGDFDYLLKTRVADMVSYRKLLGTTLLRLPGVNDTRTYVVMEEVKQTNYLLLK
                     "
     gene            1688..4348
                     /locus_tag="PXA71_002261"
     CDS             1688..4348
                     /locus_tag="PXA71_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009875390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK 4TM domain-containing
                     protein"
                     /protein_id="HDL5106327.1"
                     /translation="MIEQLKPHLKGKENLIKLMLLLTGFLGVYLLIAWASYSPLDNAW
                     SVASSITQTTLNKTGHFGAWSIDMLYAMFGKVAVLVPIALIIFSIYSLGMGLSVDMKW
                     KTVFIRLASFLLLMVGLAGLFSVLFSNSAYYLSGGFVGGVWETILSDTIGQFGALLIA
                     MLFTIAGLYFCSVQSLLPILTQFYEWIMAKSEESKTAESLQHLQNTEQKQPLVTENEA
                     VEVVDDHKPQFTDISAFKRPNISGLRHSENVEIDNREMYEIERDLELPTINILIQPDM
                     VNQVAEQATSGYELPNEESNVLQMPTIRLNTAIENEVDTIENSSSLEDLKIAESMLPQ
                     IQLDNDIEDTEEAIDDVREITPEFMVTPPKAMKDVSEQPAYPKGYGDTLIHPLLQRKV
                     ITEKPTTPLPTLDLLDKAPIQSQQITEQEIRETSVRLEAELANFGVKATVEDVLVGPV
                     VTRYEIQPAAGVKASKITNLASDIARGLMFKAIRITEVIPNKPYMGIETPNKHRETVW
                     LRDVLDSDEFRNTTATLPMALGKDISGEPVVVDMAKMPHLLVAGQTGGGKSVGVNTMI
                     LSLLFKLTPEQVRFIMIDPKVVELSIYNDIPHLLTPVVTDMKKAANALRWAVEEMERR
                     YLLVSHLQVRNIEGYNAKIDQAAAMNLPIPDPTWRPGDSMDSLPPPLQKLSYIVLIVD
                     EFADLMMSAGKEVEEYIMRIAQKARAVGIHLILATQRPSTDVITGVIKANIPSRIAFT
                     VASQIDSRTILDSGGAEALLGRGDMLYSGAGSPDIIRIHGAFMKDEEVQRVADNWRAR
                     GKPNYLESIVESRSEEADGKNDGGTGDLDPLFDEVVEYITETGSVSISNIQRRFSLGF
                     NRAARIVDQMEAQGIVSEPLKGGKREVLAR"
     gene            4500..5339
                     /locus_tag="PXA71_002262"
     CDS             4500..5339
                     /locus_tag="PXA71_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HDL5106328.1"
                     /translation="MRLDDIKESKNVEDRRFNNVGRTKVGRGKGGILTFIIVLVGAYY
                     GVDLTGLMGGGVEYEEQTSALNESEEKQLRTLSAKVLTTTENIWTSYFQQNGLTYKEP
                     SLVLYRGAIQTACGTGQSAMGPFYCPVDQKVYLDLSFYDDMRKKLRASGDFAFSYVIA
                     HEVGHHVQNLLGITSKTQRAQMKASSKAEANQISVNVELQADCFAGVWGHQLAKANRL
                     EEGDVEEAFNAAQAVGDDRLQQQSRGYVVPDSFTHGSSAQRLAWFRKGLTTGNPAVCN
                     TFN"
BASE COUNT         1693 a          963 c         1210 g         1490 t
ORIGIN      
        1 aatatttcag gaaaagtata tggagtcttt gattcactac caatgggttg aaacaaatga
       61 gcaattagag gccgtatgtg aacaggccag aaaaacaaaa gtagttgcct tagatacaga
      121 gtttatccgt acacgtacct attatccgat attgggttta attcaactct ttgatggcca
      181 acaggttagc cttattgatc caaatacgat ttctgacttc tcgccttttg tgtcattatt
      241 agccgataaa aatatcataa aagtattaca tgcctgtagt gaggatttag aagtttttga
      301 gtatcaattt aagcaattgc cagagccgat gttggatact caggtgatgg cagcctttgc
      361 cggcattggt atttcgatgg ggtttgcaaa attggtttcc cactacttaa atattgaact
      421 agacaaaggc gcttcccgaa ccgattggct tgccagaccg ctaagcgctg aacaattaca
      481 atatgcggca gctgatgttt ggtatttatt gccagtttat gagaaattgg cacaagcatt
      541 aacaaaaagc acttggcaaa gtgctgtagc agaggagtgt gtcgctttgt tgaagaaagc
      601 gaaacagcct atcaataagg aaaaagccta taaaaatatt gccaatgctt ggcgattgaa
      661 tcgggaagag ttagccatat tacaagtatt agcgaaatgg cggattgaag aagcacaaaa
      721 gcgcaatctt gccttaaatt ttgtcgtgaa ggaggcaagt ttagttcaaa tcgcaaaaag
      781 ctgtcctaaa cacacttctt cgctgttaga atttatgcac ccaaatgaag tcagaattca
      841 cggaaaaaaa atactatggt tggttgagca aggaaaagca atagaatcga atgattatcc
      901 tgaactcatt cagcgcttgg tggatgaaaa gggttataaa tattatatgc aagcgatgtt
      961 gcaaaaatta ttagaaattc aaccgcttga tatcgtaccg gagttggttg caagtaaacg
     1021 tcaattaaat cagctattta aatggtatat tgatggaaaa ccatcagaaa aaattcctga
     1081 attattaatc ggttggcgaa aaccttttgg tgaacagctg ctatcggttt tatcttaaat
     1141 ttcattcggg ttacatagac tatgtacagt ataattgcct aaaaaggagt ttatatggaa
     1201 aataaaaaac caccaaaagc attagatgcg attgatttaa aaatcttaaa cgagctacaa
     1261 cgtaacggga aaatttctaa tattgaatta tcaaagcgag ttgggctttc tccaacgccc
     1321 tgcttagaac gggtaaaacg gctagaaaaa aataacgtaa ttatgggcta taaagcttta
     1381 cttaaccctg aattacttga tgccccttta ctggtgattg ttgaaattac tttggtgcgt
     1441 ggtaagcctg atgtatttga agaatttaat aaagcgattc aacaacttga tgaaattcaa
     1501 gaatgccacc tggtatcggg ggattttgat tatctgttaa aaacccgtgt ggcggatatg
     1561 gtatcgtacc gtaagttatt aggcacaaca ttgcttcgtt tgcccggcgt aaatgacact
     1621 cgaacctatg tggtgatgga agaagtaaaa caaaccaact atttgttgtt aaagtaagga
     1681 gaattgggtg attgaacaac ttaaaccaca cctaaaaggc aaagagaact tgatcaaact
     1741 tatgcttttg ttgaccggct ttttgggcgt ttatttgcta attgcttggg caagttatag
     1801 tccattagat aatgcttggt ctgttgcaag cagcattaca caaacaacct tgaataaaac
     1861 aggtcacttt ggtgcttgga gtattgatat gctctatgca atgtttggta aggttgcagt
     1921 tttagtacct attgcattaa ttattttctc aatttatagc ttgggaatgg gtttaagtgt
     1981 cgatatgaaa tggaaaactg tcttcattcg cctagccagt ttcttattat tgatggtcgg
     2041 tcttgccggg ttatttagcg tgcttttttc aaactcagct tattatctgt cgggtggctt
     2101 tgtcggtgga gtttgggaga caatattatc tgatactatc ggacaatttg gtgccttatt
     2161 gattgcaatg ctttttacta tagctggctt atatttttgc tctgttcaat cattattgcc
     2221 aatattaacg caattttatg agtggataat ggcaaaatca gaagagagca aaacagctga
     2281 atctcttcag catttgcaaa atactgagca aaaacaaccg cttgtaactg aaaatgaagc
     2341 ggtggaagtt gtagatgacc ataaaccgca atttaccgat atctccgcct ttaaacgccc
     2401 aaacattagt ggtttaagac actcggaaaa tgtagagata gataaccgag aaatgtatga
     2461 aattgaaaga gatcttgagc taccgactat taatatttta atacagcctg atatggttaa
     2521 ccaagttgcg gaacaagcta catcgggcta tgagttacca aacgaagaat ccaatgtatt
     2581 gcaaatgccg accattcgct taaataccgc tatcgaaaac gaggtggata caatcgaaaa
     2641 cagttcatca ttggaagacc tgaaaatagc agaatctatg ttacctcaaa ttcagcttga
     2701 taatgatatt gaagatactg aagaagctat tgacgatgtg cgtgaaatta caccggaatt
     2761 tatggtaacg ccgcccaagg cgatgaaaga tgtgtctgag cagccagcct atccaaaagg
     2821 ctatggtgat acgttaattc acccgttgtt acaacgaaaa gtgataaccg aaaaaccgac
     2881 aacaccattg ccaacgctag atttgttgga taaagcaccg attcaaagcc agcaaattac
     2941 cgaacaggaa atacgagaaa cctctgtgcg gctagaagca gaattagcaa actttggcgt
     3001 aaaagctacc gttgaagatg tattggtcgg tccggtagtg acccgttatg aaatccaacc
     3061 ggctgccggg gtaaaagcct ccaaaattac caatttagcg agcgatatag ctcgtggctt
     3121 aatgtttaaa gcgattagga ttactgaagt tatcccaaac aaaccttata tgggtattga
     3181 aactccgaat aaacaccgtg aaacagtgtg gttgcgtgat gtgctagaca gcgatgaatt
     3241 ccgcaatacc actgcaacat tgccaatggc actaggtaaa gacatcagtg gtgagcctgt
     3301 ggtggtcgat atggcgaaaa tgccacactt actggtggca gggcagaccg gtgggggtaa
     3361 atcggttggg gtgaatacga tgattttaag tctattgttc aaacttacac cagaacaagt
     3421 ccgctttatt atgattgacc ctaaagtggt ggagctttcc atttataacg atattcctca
     3481 cttattaacg ccggtagtaa ccgatatgaa aaaagccgcc aacgcactac gctgggcggt
     3541 ggaggaaatg gaacgccgtt atttgctggt aagccattta caggtgcgta atattgaagg
     3601 ctataatgcg aaaatcgacc aagcggcagc gatgaatttg ccgattccag atccaacgtg
     3661 gcgaccgggc gattcaatgg atagccttcc gcctccgcta caaaaattaa gctatattgt
     3721 gctgattgtc gatgagtttg cggatttaat gatgtctgcc ggtaaagaag tggaagagta
     3781 cattatgcga attgctcaaa aagcccgagc ggtgggaatt cacttaattc ttgctaccca
     3841 acgtccgtca accgatgtga ttaccggcgt gattaaagcc aatattccaa gccggattgc
     3901 gtttacagta gcgagccaaa ttgactcaag aactatttta gattcaggtg gagcagaggc
     3961 attattaggg cgaggcgata tgctctattc aggagctggc agcccggata ttattcggat
     4021 acacggtgcg tttatgaaag acgaagaagt gcaacgcgtg gcggataatt ggcgggcaag
     4081 aggaaaacca aactacttgg aaagcattgt ggaatcccgc tcggaagagg ctgatggcaa
     4141 aaacgatggc ggaacgggcg atttagatcc gctatttgac gaggttgttg aatatatcac
     4201 ggaaaccggt tcggtctcta tcagtaatat tcaacgccgc ttctcgcttg gttttaaccg
     4261 tgcggctaga attgtggatc aaatggaagc tcaaggcatt gtttctgagc cacttaaagg
     4321 tggcaaacga gaagtgctgg cgaggtaaaa cacatacaag cggttagatt tctgtgaaat
     4381 tttgcaaatt ttgacaaaaa tctaaccgat tgtatttatc taatgctaaa taagcatagt
     4441 ataaggctag tctttgggct aaaattaacg caatttttac atcttttaag gttgaatata
     4501 tgcgattaga tgatattaaa gaaagtaaaa atgttgaaga cagaagattc aacaatgtgg
     4561 gtagaactaa ggttggtaga gggaaaggtg gaatattaac ctttattatc gtgcttgttg
     4621 gagcttatta tggtgttgac ttaacaggtt taatgggcgg tggcgtagaa tatgaggagc
     4681 agacatcagc attaaatgaa agtgaagaaa aacagctaag aaccttatcc gctaaagtat
     4741 taacgaccac agaaaatatt tggacttcct acttccagca aaatggtcta acttataaag
     4801 agccgtcttt ggtgctttac cgtggggcaa ttcaaactgc ctgtggcacc ggtcaatctg
     4861 caatgggtcc tttctattgc cctgtcgatc aaaaggttta tttagattta tcattctatg
     4921 atgatatgcg taaaaaatta agagcatcgg gcgattttgc cttctcttac gtgattgcac
     4981 acgaggttgg ccaccacgtc caaaatttat tgggcataac aagcaaaacc caacgggctc
     5041 aaatgaaagc ctcatctaaa gccgaagcaa accaaatttc agtcaatgta gaattgcaag
     5101 ctgactgttt tgccggcgtt tggggacacc aactcgcaaa agccaaccga ttagaggaag
     5161 gcgatgtgga agaagccttt aatgctgccc aagcagttgg agatgaccga ttacagcaac
     5221 aaagtcgtgg ctatgtcgtg ccggatagct tcacccacgg ctcatctgca cagcgtttgg
     5281 cttggtttag aaaaggttta accacaggaa atcctgcagt ttgtaataca tttaattaaa
     5341 aaataattaa attatt
//
LOCUS       DANLRW010000134         5293 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.135, whole genome shotgun sequence.
ACCESSION   DANLRW010000134 DANLRW010000000
VERSION     DANLRW010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5293
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.135"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..666)
                     /locus_tag="PXA71_002263"
     CDS             complement(<1..666)
                     /locus_tag="PXA71_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDL5106329.1"
                     /translation="MWKNRQLFFGYAENRLLLLSRSITGLLGILCGVYIIDHLVLSDV
                     DMIGKLTSFILIILSAIFLKERASLLQWILCLIAFIGALFIIKPAVDIRFMPYLVGVI
                     GSVFAAIAYLCLRLLAKTKKVESPNTIVFFFSAFSTLILLPFVAIDYVVLTNLQTIYL
                     VLAGVTSAVGQFCVTTAYKYAAAKDISIYSYASVLFSAILGLLFFEQYPDMLSWLGYA
                     IIFV"
     gene            complement(902..1387)
                     /locus_tag="PXA71_002264"
     CDS             complement(902..1387)
                     /locus_tag="PXA71_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HDL5106330.1"
                     /translation="MKKFAKVLMVAVPAFALAACSSSSDDAAANAAANAAANAAANAA
                     GEFGGLTAEQLKAQYNTVYFGFDSYAVEGEYRQLLDAHAQLLAKTQGNVTIAGHADER
                     GTPEYNIALGQRRADAVKGYLAAKGANNTSTVSYGEEKPAVLGHSEADYAKNRRAVLE
                     Y"
     gene            complement(1414..2700)
                     /gene="tolB"
                     /locus_tag="PXA71_002265"
     CDS             complement(1414..2700)
                     /gene="tolB"
                     /locus_tag="PXA71_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HDL5106331.1"
                     /translation="MKLFSRISGVIGIFSALLTTQVVADSDVRISIDEGVSMAQPIAV
                     VPFKASGVPADVAQIISDDLRNSGKFTPLERSQMPAQPGSAAEVVADQWSAIGIDNIV
                     VGQVSSTGGGYNVAYQLIDTLGTSGTAGGVIAQGSFIVPAAQIRQGAHTVSDEVFEKL
                     TQIRGAFRTKIAYVVQRGVSSYELRVSDYDGFNAFTITTSKEPLMSPEWSPDGSRLAY
                     VTFENKKAQVVVHDIRSGARRVVAALKGHNGAPSFSPDGSRIAFASNQDGELNIYVVG
                     SGGGTPSKLTANAGNNTEPSWSPDGSTIYFTSDRAGSPQVYRMSSSGGGASPMGGSGS
                     YNAKVSSDGKNLIMIAGDRVVKRDLASGGTEVLSSTFLDESPSISPNGIMVIYSSTKG
                     TSKVLQLVSADGRFKANLPGAGGHYKFPAWSPYLTK"
     gene            complement(2716..3939)
                     /gene="tolA"
                     /locus_tag="PXA71_002266"
     CDS             complement(2716..3939)
                     /gene="tolA"
                     /locus_tag="PXA71_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HDL5106332.1"
                     /translation="MKSQQDRLELAVIVSILLHILLIGLLLLGSLFTKTELAAAGGSG
                     GDSDSFEAVMVDTGQVAAEYGQLLAEKKGSKASKPKVEPKEEAVEEDVEDKPTPEEIQ
                     KQKQAELAAIQEKQRQQEIERQQKLQEQQKQEQAKQEELKKQQAEEATRKKAAEAAKL
                     KADAEAKRLEAAAKQAEEEKKAKEALEKKLEQQKKAEAEKKLKEQKELKEQQAKEAKE
                     AKEKAEKEAKAKAEKEAKEKAEKEAKAKAEKEAKEKAEKEAKAKAAAEAKAAQAKNNK
                     ALDDFLNSGDIGGGSSKGGNKNSAGSQGSGGTSGLGQGTNVDGNAYGQRIKKLIQSRY
                     RVDPSFAGKQCDVKIFLSRDGTITNYQVISGDKAVCDAAVSAIVATRKVPPAPSDAVY
                     NMFKSPTLDFSLKVK"
     gene            complement(3953..4390)
                     /gene="tolR"
                     /locus_tag="PXA71_002267"
     CDS             complement(3953..4390)
                     /gene="tolR"
                     /locus_tag="PXA71_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HDL5106333.1"
                     /translation="MSRRLKRNDIKSEINIVPFLDVLLVLLLIFMATAPIISQSVEVN
                     LPEDTHSQSVSNEDKTPVILEVAGVGEYKLKIDGNYVQSNGQENINESEVVAYAGEQF
                     QKDNNTLFLVAGDKVVPYEEIMKGITLLKDAGVKSVGLMTEGK"
     gene            complement(4532..5212)
                     /gene="tolQ"
                     /locus_tag="PXA71_002268"
     CDS             complement(4532..5212)
                     /gene="tolQ"
                     /locus_tag="PXA71_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein TolQ"
                     /protein_id="HDL5106334.1"
                     /translation="MQTEFSLLSLFLEASIVVKIVMLILIVFSILSWAVIIQRSKILT
                     KAKKDSLAFEDRFWSGEDLNRLHQGLENRRDALNGSEQIFYVGFKEFTRLQQANPDAP
                     ESIIQGSTRAMNLALNREMESLENYIPFLGTVGSISPYIGLFGTVWGIMHSFMGLSAV
                     KQATLQSVAPGIAEALIATAIGLFAAIPAVMAYNRLNLRLGKVEQGYVNFIDEFTTLL
                     HRQAFSKR"
BASE COUNT         1516 a         1215 c          905 g         1657 t
ORIGIN      
        1 gacaaaaata attgcataac ctagccaact caacatatcc gggtattgtt caaagaacaa
       61 caaccctaaa attgcactaa atagcacaga ggcataacta taaattgaga tgtctttcgc
      121 cgccgcatat ttataggcgg tagttacaca aaactgcccg accgctgaag ttacccctgc
      181 taacactaag tagattgtct gtaaattggt tagcactaca taatcaatgg cgacaaaagg
      241 caataatatc aaggtcgaaa aggcagaaaa aaagaaaaca atggtattag gtgattctac
      301 ttttttggtt tttgccaata accttaagca taaataggca atggctgcaa acacagagcc
      361 aatcacgcca accagataag gcataaagcg aatatcaact gccggtttga taataaaaag
      421 tgccccgata aaggcaataa ggcataaaat ccattgcagg agagatgctc tctcttttaa
      481 aaaaatcgca gaaagaataa ttaaaatgaa cgacgtgagt ttgccaatca tatcgacatc
      541 acttagcaca aggtgatcga tgatatatac accacataaa atccccaata acccggtgat
      601 ggaacggctt aataataaca aacgattttc tgcataacca aagaataatt ggcgattttt
      661 ccacacaata taaccgctta tcaatgctgt gcgttgcgaa aaatcgcttt ttgtgcaatc
      721 ggtacatccc ccgaaagacg aagaaaagca gccataatcg caaagcttag tgccgacaaa
      781 agcacacaaa aaatggcttt aaataacggc gagagcgaat tccaaaaatt catagcataa
      841 aggcttttaa taaaaataaa gccctgatta ttcagggctt caatttagaa tcaactaaga
      901 attagtattc taatactgca cgacggtttt tcgcgtagtc agcttctgag tgacctaata
      961 ctgctggttt ctcttcaccg taagaaacag ttgaagtgtt gttagcacct ttagctgcta
     1021 agtaaccttt aactgcatct gcgcgacgtt gacctaatgc gatgttgtac tctggagtac
     1081 cacgctcatc agcgtgacca gcaatagtta cgttaccttg agtttttgct aataattgag
     1141 cgtgagcgtc taataattga cggtattcac cttcaactgc atagctgtca aaaccgaagt
     1201 atacagtgtt gtattgtgct tttaattgtt cagctgttaa accaccgaat tcgcctgctg
     1261 catttgctgc tgcatttgct gctgcgtttg ctgctgcgtt tgctgctgca tcatctgatg
     1321 agctgctaca tgctgctaat gcgaaagctg gtactgctac cattaatact ttagcaaatt
     1381 ttttcatttg ttgctcctaa tagagaaata ttattattta gttaagtatg gtgaccatgc
     1441 agggaattta taatgtccac ctgcgccagg caaattagct ttaaaacgcc catctgcaga
     1501 caccaattgt agcactttac tcgtaccttt ggtagagcta taaataacca taatgccatt
     1561 cggtgaaata cttggacttt cgtctaagaa agttgaactc agtacttctg tgccacctga
     1621 agcgagatcg cgtttcacaa ctctatcacc ggcaatcatg attaaattct taccatcaga
     1681 tgatactttc gcattatagc taccgctacc gcccattggg ctagcaccac cacctgatga
     1741 actcattcta taaacttgag gagaacctgc acggtcagac gtaaagtaga ttgtgctacc
     1801 atctggagac cagcttggtt cagtattatt tccagcatta gcggtcaatt tacttggtgt
     1861 accaccgcca ctacctacaa cataaatatt taactcacca tcttgatttg aggcaaacgc
     1921 aatgcgagaa ccgtctggag agaatgatgg cgcaccatta tgtcctttca atgctgccac
     1981 tacacggcga gcacctgaac gaatatcgtg aacaacaacc tgcgcttttt tattttcaaa
     2041 tgtcacataa gctaatctgc taccatctgg tgaccactct ggcgacatta aaggctcttt
     2101 actggttgta atagtaaagg cattaaaacc atcataatca gatactcgta attcatacga
     2161 tgatacgcca cgttgaacca catacgcaat tttagttcta aatgcaccgc gaatttgggt
     2221 taatttttca aatacctcat cacttactgt atgcgcacct tgacgaattt gggctgccgg
     2281 aacaataaat gaaccttggg caatgacacc acccgctgta cccgatgtac caagagtatc
     2341 aattaattga taagcgacat tataaccgcc acctgtgcta ctcacttggc caactacaat
     2401 attatcaata ccgatagcac tccattgatc tgccaccact tccgctgctg atcccggttg
     2461 agcaggcatt tgagagcgtt caagcggtgt aaatttacca ctatttcgca aatcatcaga
     2521 aataatttgt gcaacatctg ccggcacacc gctggcttta aatggcacaa ccgcaatcgg
     2581 ctgagccata cttacacctt catcaataga aattcgcaca tcagaatcag caaccacctg
     2641 agttgtcaat aatgctgaaa agatgcctat tacacccgat atacgagaga ataatttcat
     2701 ttgtagtcct ctaaattatt taacttttaa actaaaatca agtgttggtg atttaaacat
     2761 attatatacc gcatctgatg gtgcaggtgg tacttttcta gttgccacta ttgcacttac
     2821 cgctgcatca catactgctt tatcgccact gataacttga tagttagtaa ttgtgccatc
     2881 tcgacttaag aatatcttaa catcacattg ttttccggca aaacttggat caacccgata
     2941 tcgagattga attaatttct taattcgttg accatatgca ttaccatcta cattagtacc
     3001 ttgccctaag ccacttgtac caccagaacc ttgtgatcct gctgagtttt tgttaccacc
     3061 tttacttgaa ccaccaccga tgtctccact attgaggaaa tcatcaagtg ctttattgtt
     3121 tttcgcttgg gcggcttttg cctcagcagc tgccttcgct ttagcttctt tctcggcttt
     3181 ctctttggct tctttttctg cttttgcttt ggcttctttc tcagcctttt cttttgcttc
     3241 tttttctgcc ttggctttag cttctttttc tgctttttcc ttcgcttctt tagcttcttt
     3301 tgcctgctgt tccttcagtt ctttttgctc ttttaacttt ttctcagctt ccgctttctt
     3361 ctgctgttca agcttctttt caagtgcttc tttagctttt ttctcttctt cagcttgttt
     3421 agcagcagcc tctaaacgct tagcttctgc atctgctttc agttttgctg cttcagctgc
     3481 ttttttacga gttgcttctt ctgcttgctg ctttttaagc tcttcttgct tagcttgttc
     3541 ttgcttttgc tgttcttgta gtttttgctg acgctcaatt tcttgctgac gctgtttctc
     3601 ttgaatcgcc gctaactcag cttgtttctg tttttggatc tcttccggag tcggtttatc
     3661 ttccacatct tcttcaacag cttcctcttt aggctctacc tttggcttcg atgcttttga
     3721 gccttttttc tctgccaata actgcccata ttcagcagcc acttgcccag tatctaccat
     3781 cacagcttca aagctatcgc tatcgccacc actgccacca gccgcagcga gttccgtctt
     3841 agtgaaaaga gacccgagca ataacaaccc gattaacaat atatgcaata agatcgaaac
     3901 aataaccgct agctctagtc tatcttgttg agatttcaca cgttatcctt ggctatttac
     3961 cttctgtcat taaacctacc gatttcactc cggcgtcttt aagtagtgta atacctttca
     4021 taatttcttc ataaggtact actttatcac cggcaactaa aaataaggta ttgttatctt
     4081 tttgaaattg ttcccctgca taggcaacaa cttctgattc attaatattc tcttgcccat
     4141 tactttgcac atagttaccg tcaattttca atttatattc accaacacct gccacctcca
     4201 aaatcactgg agttttatct tcattagaaa ctgattggct atgcgtatct tccggtaaat
     4261 taacttctac actttgactg ataattgggg ccgttgccat aaaaatcagc aataatacca
     4321 acaatacatc aagaaatgga acaatgttga tttctgattt aatgtcatta cgttttaaac
     4381 gacgagacat atattcctct ttacaggtgc ttagcacctt aattgatctg aaataaccgg
     4441 cacagtgtcc cggtctcgaa taatgcggtt acaagcggtc ttttttacga aaaactttac
     4501 aaattttcat taaaaatcaa ccgcttgtag attatctttt tgaaaaagcc tgacggtgta
     4561 ataaggtcgt gaactcatca atgaaattca catacccttg ctcaacttta cctaaacgta
     4621 aattcaaacg gttatatgcc attactgcag gaatcgccgc aaataaaccg atagccgttg
     4681 caattaatgc ttctgcaata cccggtgcga ctgattgtaa agttgcttgc ttaactgcac
     4741 ttaatcccat aaaggagtgc ataattcccc aaaccgttcc gaataaacca atatatgggc
     4801 tgattgaacc cactgtgcct aaaaacggaa tgtagttttc taaactttcc atttcacggt
     4861 ttaatgctaa gttcatcgca cgggtagaac cttgaataat cgattctggc gcatctgggt
     4921 tcgcttgttg taaacgggta aattctttaa acccaacata aaagatttgc tctgaaccat
     4981 ttaatgcatc acgacgattc tctaaacctt ggtgtaaacg gtttagatct tcccctgacc
     5041 agaatcgatc ttcaaaagca agggaatctt ttttggcttt agttaaaatt ttgctgcgct
     5101 gaataatcac cgcccaagac aaaattgaga atacaataag gatcagcatc acgatcttta
     5161 ccacaatact tgcttctaaa aataacgaaa gaagactaaa ttcagtttgc attaataaaa
     5221 ctccgaatag tttttaaata gaaaaataac ttttttgtaa tgcttgacga atatcatcag
     5281 gaattgcaac cgg
//
LOCUS       DANLRW010000135         5215 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.136, whole genome shotgun sequence.
ACCESSION   DANLRW010000135 DANLRW010000000
VERSION     DANLRW010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5215)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5215)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5215
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.136"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            32..1180
                     /locus_tag="PXA71_002269"
     CDS             32..1180
                     /locus_tag="PXA71_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005613158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HDL5106335.1"
                     /translation="MTLSLISACSSLPTSGPSYSEILASNENTAETQLPEVNLIKLDN
                     ITVQNLYQEQQSQRFSGFDGSMGVGGYAGTVNVGDILEISIWEAPPAVLFGGTFSAEG
                     QGNGHLTQLPQQMVNKNGTVTVPFIGNIKVAGKTPEVIQNQIVGALSRKANQPQALVR
                     IANNLSSDVTVIRQGNSIRMPLSANNERILDAVAAVGGTSENIEDVTVRLTRGNKVRS
                     MAFETLIADPSQNITLRSGDVIALMNTPYSFTGLGAVGNNQQMRFSSKGITLAEAIGK
                     MGGLIDERSDPRGVFVFRHIPFTQLDYDNQAQWREKGYAEGMDVPTVYQVNLLKPQSM
                     FLLQRFPIQDKDIVYVSNAPLSEFQKFLRMIFSITTPITGTANTIRAY"
     gene            1252..2355
                     /locus_tag="PXA71_002270"
     CDS             1252..2355
                     /locus_tag="PXA71_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5106336.1"
                     /translation="MSKKKKHFLANPLLWLTVIIPTACSGIYYSLFASDIYVSESSFV
                     VRSPNNQSSLTGVGALLQNSGFARSQDDTYSVQEYMRSRTALEQLEAEIPVKRFYSEQ
                     GDLLSKFNGLGFNDTQEAFYRYFKERLNIDVDSISGIATLRVRAFNAEEGQKINENLL
                     QQGETLINRLNERARQDTVEFAEERVKEAEKDVNNTALALSQYRTKNKIYDLPAQSSV
                     QLSLISTLKSELIRVETQLAQLKSITPDNPQVAALQMRQKSLKKEIDDQSKQLAGGNT
                     SVATQTAEYQRLVLANELAQQQLAAAMTSLQNTRGEADRQQLYLEVIGRPSKPDWALE
                     PYRIYNIISTFFIGLILFGVLSLLLASIREHKN"
     gene            2355..3152
                     /locus_tag="PXA71_002271"
     CDS             2355..3152
                     /locus_tag="PXA71_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_157140410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDL5106337.1"
                     /translation="MRYGDNTTFKRSCVIQKRVIHALLMRELITRYGRKNIGFLWLFI
                     EPLLLTLVITVAWKYIKADKFSTLNIIAFMITGYPIAMMWRNASNRAQGAISANLSLL
                     YHRNVRVLDTIFTRVLLEVTGASIAQILLMTIFIAIGWIEMPNDIFYMLCAWILMAFF
                     ALGLGLIICTLAHYIEPFGKIWGTFSFFLLPLSGAFFFVHNLPLTAQNIALWFPMIHG
                     TEMFRHGYFGETVITYESISYLIVSDIILLFIGLLCVRSFSKGIEPR"
     gene            3149..3796
                     /locus_tag="PXA71_002272"
     CDS             3149..3796
                     /locus_tag="PXA71_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015702020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDL5106338.1"
                     /translation="MISIRNVSKQYRTNNGWKTILKDINFELKKGEKVGILGRNGAGK
                     STLIRLMSGVEPPTTGTIERQMSISWPLAFSGAFQGSLTGMDNLRFVSRIYDADFDYV
                     KSFTEEFSELGEYLYEPVKSYSSGMKARLAFALSLSIEFDCYLIDEVIAVGDARFAAK
                     CKHELFEKRKDRSLILVSHSPASIKEYCDSAMVLEEGIMHTFDSIDNAYNFYNKT"
     gene            complement(3874..4503)
                     /locus_tag="PXA71_002273"
     CDS             complement(3874..4503)
                     /locus_tag="PXA71_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HDL5106339.1"
                     /translation="MDFSKILSQVLDTAKDAATNGLIKGNSKNDQIAKIGGGAVAIGL
                     ISMLFGRNGGSSLAKLGSLAAIGSLAYQAYQKYQAQNSSVSELSQNNFENVDENVASK
                     VILQAMIAAAASDGAITEEEKAAIVSQVGDEAEVIEWIRQEMDTPATVEEIARQVGND
                     QALATQVYLASRAVCRDLERKEIVFLANLADALGLAEALVEQLEKDAGF"
     gene            complement(4575..5048)
                     /locus_tag="PXA71_002274"
     CDS             complement(4575..5048)
                     /locus_tag="PXA71_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009874984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HDL5106340.1"
                     /translation="MLEKITACPCQTGKRYAECCQPFHLKQTFASTAEQLMRSRYSAY
                     TLVNIPYIVETTVPSQQKLLDQTAMKEWAENTKWVGLSVLNHLPSLSRIHSQVEFKAF
                     FDTDEGIQGHHETSLFVQIDERWFFVDPTVPLPHQKQPCVCGSGKKFKHCCGNYL"
BASE COUNT         1659 a          924 c          978 g         1654 t
ORIGIN      
        1 acaaaaaaaa ttaaatacta cattattatt tataacatta tcattaattt cagcctgctc
       61 tagcctacca acgtccggcc caagctatag cgaaatctta gcaagtaatg aaaatacagc
      121 tgaaacgcag ttgcctgaag tcaatttaat caagttagat aacatcaccg tacaaaactt
      181 ataccaagag caacaatctc aacgtttttc aggatttgat ggctcaatgg gtgtgggtgg
      241 ttatgctgga acagttaatg taggcgatat attagaaata tccatttggg aagcgccacc
      301 tgccgtgcta tttggtggaa catttagtgc tgaagggcaa ggtaatgggc atttaaccca
      361 attacctcag caaatggtga acaaaaatgg aacggtaact gtgcctttta tcggtaatat
      421 taaagttgct ggaaaaacac ctgaagtaat tcagaatcaa attgtcggag cattgagccg
      481 taaagctaat caacctcaag cattagttcg tattgcgaat aacttgtcgt ctgatgttac
      541 ggttatccgc caaggaaata gcattcgtat gccattaagt gccaataatg agcgtatttt
      601 agatgcagtt gcggcagtag gtggtacaag cgaaaatatt gaagatgtaa cagttcgttt
      661 aacacgtgga aataaagtgc gttcaatggc gtttgaaaca ttaattgctg acccctcaca
      721 aaatattaca ttacgttcag gtgatgttat tgctttaatg aatactcctt atagctttac
      781 cggattagga gcagtaggta ataatcaaca aatgcgtttt tcaagtaaag gcattaccct
      841 tgctgaagct atcggtaaaa tgggaggatt aattgatgag cgttcagacc ctcgtggtgt
      901 gttcgtattc cgccatattc cttttacaca attagattac gataaccaag ctcaatggcg
      961 tgaaaaaggt tatgcagagg gaatggacgt tccaactgtt tatcaggtga atttattaaa
     1021 accgcaatca atgtttttat tgcagcgttt ccctattcaa gataaagata ttgtatatgt
     1081 gtcgaatgct ccactgtctg aatttcaaaa attcttgaga atgattttct ccattactac
     1141 accaattaca ggtacagcta atacaattag agcgtactaa ttagctcata gataaaatgg
     1201 taaaaaatca ttaaaaaatg accgcttgta acacttttcg ttgaggattt tatgtcaaag
     1261 aagaaaaaac attttttagc caaccctttg ttgtggctaa ctgtaattat tccaactgct
     1321 tgttctggaa tttattattc cttatttgcc tctgatattt atgtttcaga atctagcttt
     1381 gtggttcgtt cgcccaataa tcaatcgagc ttaacaggcg ttggtgcttt attgcaaaac
     1441 tccggtttcg cccgttctca agatgatacc tattcagttc aggaatatat gcgttcccgt
     1501 accgcattag aacaacttga agcagaaatt ccggtaaagc gtttttatag tgagcaaggt
     1561 gatttactaa gcaaatttaa cggtttagga tttaacgata cccaagaagc attttatcgt
     1621 tattttaaag aacgtctgaa tattgatgtc gattctattt caggtattgc aacgctacgc
     1681 gttcgtgctt ttaatgcaga agaaggacaa aaaattaacg agaatttatt acagcaaggg
     1741 gaaacattaa ttaaccgcct taatgaaaga gcaagacaag atacggttga gtttgcagaa
     1801 gagcgtgtaa aagaggccga aaaagacgtc aataatactg cgttagcatt aagccaatat
     1861 cgaactaaaa ataaaattta tgatttaccg gcacaatcca gcgttcagct ctcattaatt
     1921 tctaccttaa aaagtgaatt aattcgggta gaaacacaat tagcacaatt gaagtcaatt
     1981 acgccggata atcctcaggt agccgcatta caaatgcgtc aaaaaagttt gaaaaaagaa
     2041 attgatgatc agtccaaaca acttgcagga ggtaatactt ctgtagcaac gcaaactgct
     2101 gaatatcaac gtttggttct tgctaacgaa ttagctcagc aacaacttgc agcagcaatg
     2161 acttcattac aaaatacacg aggtgaagct gatcgccaac aactttattt agaggtaatt
     2221 ggtaggccaa gcaaaccaga ttgggcatta gaaccctaca gaatttataa tattatatca
     2281 acttttttta tcggcttaat tctatttgga gtattaagtt tgttactagc aagtattaga
     2341 gagcataaaa actaatgcga tatggtgata atacaacctt taaacgttcc tgtgtgattc
     2401 aaaaacgggt gattcacgcc cttttaatga gggaattaat tactcgttat gggcgtaaaa
     2461 atattggctt cttatggctt tttatcgaac cattattgtt aacgttagtg attactgttg
     2521 cttggaaata tataaaagca gataagtttt caactttaaa tattatcgct tttatgatta
     2581 caggctaccc tatcgcaatg atgtggagaa atgcctctaa tagagctcaa ggagcaatat
     2641 cagcaaactt aagtttgctt taccacagaa atgtgagagt gctagatacg atatttactc
     2701 gagttttatt agaagttact ggcgcatcta tcgcccaaat tctcttaatg actatattta
     2761 tcgctattgg ttggatagaa atgcctaacg atattttcta tatgctctgt gcttggatat
     2821 taatggcatt ttttgcctta ggtttaggtt taattatctg tactttagca cattatattg
     2881 aaccttttgg taagatttgg ggaacattca gcttctttct acttcctctt tctggtgcat
     2941 tcttctttgt ccataattta ccgctaactg ctcaaaatat tgccttatgg tttccaatga
     3001 ttcatggtac agaaatgttt agacatggtt attttggtga aacggtaatt acctatgaga
     3061 gcattagtta tcttatagta agtgatatta ttcttctatt tataggactg ctttgtgtga
     3121 gaagttttag taaagggata gaaccaagat gattagtatt agaaatgtaa gtaagcaata
     3181 tcgaactaat aacggttgga aaaccatatt aaaagatata aattttgagc tgaaaaaagg
     3241 cgaaaaagtg gggattttag ggcgcaatgg tgcaggaaaa tcaaccttaa tccgtttaat
     3301 gagcggagta gaacctccaa caacaggtac gattgaacgt caaatgtcga tttcttggcc
     3361 actggcattt agtggtgcat tccagggtag tttgaccgga atggataatc ttcgtttcgt
     3421 cagccgaatt tatgatgctg attttgacta tgtaaaatct ttcaccgaag aattttcaga
     3481 actcggtgaa tatttatatg aaccggtaaa aagctattct tctggtatga aggcccgttt
     3541 agcctttgca ttatcgcttt ctattgaatt tgattgttac ttaattgatg aagtgattgc
     3601 agtaggcgat gctcgattcg ctgccaaatg taagcacgag ctttttgaaa aacggaaaga
     3661 ccgttcattg attttagttt ctcatagccc agcctcaatt aaagaatatt gcgattctgc
     3721 aatggtttta gaagagggta tcatgcatac ttttgattct atagataacg cttataattt
     3781 ctacaataaa acataaaaga acaagcggtt atatttcaca agtttttcgc aaaaaactct
     3841 caaaatataa ccgcttgtta ctaaaactga aaattagaaa cctgcgtctt tttctaattg
     3901 ttcaactaat gcctcagcta aacctaaagc atcagctaaa ttagctaaga aaacgatttc
     3961 tttgcgttct aaatctctgc atactgcacg ggaagctaag taaacttgtg tagccaatgc
     4021 ttggtcatta cctacttggc gggcaatctc ttcaactgta gccggagtgt ccatttcttg
     4081 acgaatccac tcaatgactt cagcctcatc tccaacttgg gaaacaatag ctgctttttc
     4141 ctcttcagta atagcaccat ctgaagcagc agcggcaatc attgcttgta aaatcacttt
     4201 acttgccaca ttttcatcta cattttcaaa attattttgg ctaagttctg aaaccgatga
     4261 attttgcgct tgatactttt ggtatgcttg ataagcaagg ctaccgatag cggctaaaga
     4321 gcctaatttt gctaaacttg aaccgccatt acgcccaaat aacattgaaa ttaaaccaat
     4381 agcgacagcg ccgccaccaa ttttagcgat ttgatcgttt ttagaattac ctttaattaa
     4441 tccgtttgta gcggcatctt ttgctgtatc taatacttga cttaaaatct tactgaaatc
     4501 catttttgtt cctcttggta agtaaatgaa atttactcat tagtccttag attcaaacaa
     4561 gagttcaatt caaattaaag ataatttcca caacagtgct taaacttctt tccggagcca
     4621 catacacaag gttgtttttg atgaggcaaa ggtacggtag gatccacaaa aaaccatcgc
     4681 tcatcaattt gaacaaaaag agaggtttcg tggtgtccct gtatcccctc atctgtatca
     4741 aaaaaggctt taaattcaac ctgactatgt attctcgaaa gagaaggtaa gtgatttagc
     4801 acggataatc ctacccattt tgtattttca gcccactctt tcattgcagt ctgatcaagt
     4861 aatttctgct gacttggcac tgtcgtttcc acaatatagg gaatattaac caaagtataa
     4921 gcactgtaac gggagcgcat taattgctct gccgttgatg caaatgtctg ttttaaatgg
     4981 aaaggttggc aacattcagc gtagcgtttg cctgtttggc aaggacaagc ggtgattttt
     5041 tctaacattt ttacatttcc gcataaaaat aaagatgtga aaagtttacg ctataaataa
     5101 agaaaaataa attttataaa aaagcgtgac ataccccttg tggataactt atgcaaaaat
     5161 cgtgaatttt ttgggtattc attgctttaa aaagccttta ttctatagat tgtgg
//
LOCUS       DANLRW010000136         5148 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.137, whole genome shotgun sequence.
ACCESSION   DANLRW010000136 DANLRW010000000
VERSION     DANLRW010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5148)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5148)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5148
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.137"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..303
                     /locus_tag="PXA71_002275"
     CDS             <1..303
                     /locus_tag="PXA71_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106341.1"
                     /translation="ENSLTILGIRENTQKNYMIHEDFFYKNNNKLHMDKTKITLEKGD
                     KVTYYMICGKKLFENTETFVLEIENNKYQIPNKYINNIQNYENKNSQPNNASKCNS"
     gene            254..739
                     /locus_tag="PXA71_002276"
     CDS             254..739
                     /locus_tag="PXA71_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HDL5106342.1"
                     /translation="MKIKTLSLIMLLSVTVNAAPVELHQFDSPKQESDYRALIQELRC
                     PQCQNNNIADSNATIATDMRAKTLELLKQGKSKDEVVDYMIERYGNFVTYDPPLTPAT
                     IMLWLLPLILIALGLGVVLRRKKNKPQAVNFEQNTAKPTTHLAQDEQERLNQILNKEE
                     K"
     gene            736..1647
                     /gene="ccmI"
                     /locus_tag="PXA71_002277"
     CDS             736..1647
                     /gene="ccmI"
                     /locus_tag="PXA71_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcmI"
                     /protein_id="HDL5106343.1"
                     /translation="MNFWLAIIFVTLIVCGVAFYPLLKKNKQIDNTKRDSLNKAFYFD
                     RLKEVENEANEGVIDDPEQTKLELQKNLLDDIPHSTQSATSEKLTLGKSWFVALILFV
                     GGISFAIYSNVGSWFSNSMLDTTHQKLDSFYERLKTEETNPLSQEEMNQFAMALRVDL
                     QSNPNDDKKWYMLGQIGMALDDGQLAHDAFSKAAQLKPDNLDYKLSHAQLLLFSEAQE
                     DKKQGETLLKEIIRQDHTNFNALSLLAFHSFEKEDFKMAAMTWGMMLKLLPDEDPSKV
                     TVERSFNMALSNLSEAEKQELQKGEKK"
     gene            1644..2249
                     /gene="mog"
                     /locus_tag="PXA71_002278"
     CDS             1644..2249
                     /gene="mog"
                     /locus_tag="PXA71_002278"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HDL5106344.1"
                     /translation="MTACKPLSKEKLKIGLVSVSDRASQGVYSDQGIPELRAWLESAL
                     TEPFELETRLIPDEQAIIEQTLIELVDAHACHLVLTTGGTGPAKRDVTPDATLAVAHR
                     EMPGFGEQMRQVSLHFVPTAILSRQVGVIRHDSLILNLPGQPKAIKETLEGVKDEQGK
                     VLVKGIFSAVPYCLQLLSEIYVETHAAICESFRPKSARREN"
     gene            2259..2597
                     /gene="glnB"
                     /locus_tag="PXA71_002279"
     CDS             2259..2597
                     /gene="glnB"
                     /locus_tag="PXA71_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005654045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HDL5106345.1"
                     /translation="MKKIEAIIKPFKLDDVREALTDVGVSGMSITEIKGFGRQKGHTE
                     LYRGAEYAIDFLPKVKVEIVIPDELEEQCIEAIMETAQTGKIGDGKIFVYDVGRVIRI
                     RTGEENEEAI"
     gene            2678..3157
                     /gene="lspA"
                     /locus_tag="PXA71_002280"
     CDS             2678..3157
                     /gene="lspA"
                     /locus_tag="PXA71_002280"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005724521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HDL5106346.1"
                     /translation="MKTGLKFLWVSLIVIIIDLWSKYIVVQHFEFGESINILPIFNFT
                     YARNYGAAFSFLADHSGWQKYFFLGLAVVISSALVVALWKNQAVKKLENIAYALIIGG
                     AIGNAIDRAYNGYVVDFLHFYWDIYHYPVFNIADIAICVGAGLLILEAFITKKEPKK"
     gene            3168..4112
                     /gene="ispH"
                     /locus_tag="PXA71_002281"
                     /gene_synonym="lytB"
     CDS             3168..4112
                     /gene="ispH"
                     /locus_tag="PXA71_002281"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012263266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDL5106347.1"
                     /translation="MKILLANPRGFCAGVDRAISIVELALEIHGAPIYVRHEVVHNKF
                     VVDGLKAKGAIFVEELHEVPDDAIVIFSAHGVSQVVRQEAKNRGLKVFDATCPLVTKV
                     HMQVARASKKGTKAILIGHEGHPEVIGTMGQYNNQEGGIYLVESVEDIANLPVSNNDE
                     LTFMTQTTLSIDDTIGVIEALKEKYPAIQGPRKNDICYATTNRQHAVRELAEQSQLVL
                     VVGSKNSSNSNRLAELASRMGVMSKLIDGPQDIDPTWLEGIETIGITAGASAPEVLVQ
                     SVISHLKTLGVTEVETLVGNEEDVVFEVPKELRIKEVK"
     gene            4112..4360
                     /locus_tag="PXA71_002282"
     CDS             4112..4360
                     /locus_tag="PXA71_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase assembly factor 2"
                     /protein_id="HDL5106348.1"
                     /translation="MTEINRFKLEWACRRGMRELDKMIMPFYQNHFNELNETQQQAFV
                     EMLNYSDPELFRWVMLQAPAPTEEIAELIRLMRDKIET"
     gene            complement(4567..>5148)
                     /locus_tag="PXA71_002283"
     CDS             complement(4567..>5148)
                     /locus_tag="PXA71_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDL5106349.1"
                     /translation="HSNHSNHSNHSNHSNHSNHSNQSANQYIFNSDWFTHNVPSLASI
                     FEYVKPRRILEIGSFEGRSSVFFIEEALKYQSQVEIHCIDSWEGGAEHQGVWDMGEIE
                     QRFIHNVTLAQQKFQNVVLYKHRGYSHQKMIELLANGYINYFDYIYIDGSHEAPDVLF
                     DALLAHRLVRKGGVISFDDYLWSPDETGKQRHY"
BASE COUNT         1661 a         1008 c         1102 g         1377 t
ORIGIN      
        1 gaaaactcat taacaatctt aggaataaga gaaaatacgc agaaaaacta tatgatacat
       61 gaagattttt tctataaaaa taacaataaa cttcacatgg acaaaactaa gataacacta
      121 gaaaaaggag ataaggttac ttattatatg atctgtggaa aaaagctatt tgaaaacaca
      181 gaaacttttg tactggaaat tgaaaataac aaatatcaaa ttcctaataa atatatcaac
      241 aatattcaaa attatgaaaa taaaaactct cagcctaata atgcttctaa gtgtaacagt
      301 taatgctgct ccggtagaac tgcaccaatt cgacagcccg aaacaagagt cggactatcg
      361 tgccttaatt caagaactgc gttgcccgca gtgtcaaaat aataatatcg ccgattccaa
      421 tgcgactatt gccaccgata tgcgggcaaa aaccttagaa ttgctcaaac aaggcaaaag
      481 caaagacgaa gtggtggatt atatgattga acgctacggc aatttcgtca cttacgaccc
      541 gcctctcaca ccggcaacca ttatgttatg gctgttgccg ttaattttaa ttgccttagg
      601 gctgggggtg gtgttgcgta gaaagaaaaa caaaccacaa gcggtcaatt ttgagcaaaa
      661 tactgcaaaa ccgaccactc atctcgctca agatgagcaa gaacgtctta accaaattct
      721 caataaggaa gaaaaatgaa tttctggctg gcaattattt tcgttacact gattgtatgt
      781 ggcgtggcgt tttatccgtt acttaaaaag aacaagcaaa tcgataacac caagcgagac
      841 agcttaaaca aagccttcta ttttgaccgc ttaaaagaag tggaaaacga agcgaatgaa
      901 ggggtgattg atgaccctga acaaaccaaa ttagagctac aaaaaaactt gcttgatgat
      961 attccacaca gcacacaaag tgccacaagt gaaaaattaa cgctcggcaa gtcgtggttt
     1021 gtggcattga ttttatttgt cggcggtatc agctttgcga tttacagcaa tgtcggttct
     1081 tggttctcca actcaatgtt agacaccact caccaaaaat tagacagctt ctatgagcgt
     1141 ttaaaaaccg aagagaccaa tccgctctca caagaggaaa tgaaccaatt tgcgatggca
     1201 ttacgggtag atttacaaag taatccgaat gacgacaaaa aatggtatat gctcggtcaa
     1261 atcgggatgg cgttagatga tggtcagctt gcacacgatg cctttagcaa agcggctcaa
     1321 ctcaagccgg ataacttaga ttacaaactc agccacgccc aactgctgct cttttccgaa
     1381 gcacaggaag acaaaaaaca gggtgaaacc ttgttaaaag agattatccg ccaagaccac
     1441 acaaacttta atgcgttaag tttattggcg ttccactcct ttgaaaaaga agatttcaaa
     1501 atggcggcaa tgacgtgggg aatgatgtta aaactactgc ctgatgaaga tcctagcaaa
     1561 gtaacggtag aacgcagttt taatatggcg ttatccaatt taagtgaggc ggaaaaacaa
     1621 gaattgcaaa aaggtgagaa aaaatgaccg cttgtaaacc acttagcaaa gagaagttga
     1681 aaatcggctt ggtgtcggtt tcagaccgag cctcgcaggg ggtttattca gaccaaggca
     1741 ttcccgaatt aagggcgtgg cttgaatctg ccttaaccga gccgtttgag ctggaaaccc
     1801 gcttaattcc cgatgagcaa gccattattg agcaaacctt aatcgagtta gtcgatgctc
     1861 acgcttgcca tttggtatta accaccggcg gcaccggccc ggcaaaacgt gatgtcaccc
     1921 cagatgccac ccttgctgtc gcccaccgag aaatgcccgg ctttggcgaa cagatgcgac
     1981 aagtgagcct tcacttcgtg ccaaccgcca ttctctctcg ccaagtggga gtaattcgcc
     2041 acgacagtct gattttaaat ctgccggggc aaccgaaagc aattaaagaa acgctggaag
     2101 gtgtgaaaga tgaacagggc aaagtattgg ttaaaggtat ttttagtgcc gtgccatact
     2161 gtttacaact tttaagcgaa atttatgtcg aaacccacgc agctatttgc gaaagtttca
     2221 gacccaaatc ggcaagacga gaaaattaag gctaaaaaat gaaaaaaata gaagcaatta
     2281 ttaaaccttt taaattagac gatgtgcgtg aagccttaac cgatgtgggt gtcagcggaa
     2341 tgagtattac cgaaatcaaa gggtttggca gacaaaaagg acataccgag ctttatcgtg
     2401 gggcggaata tgcgattgat tttctaccga aagtgaaagt cgaaatcgtg attcccgacg
     2461 agttggaaga acagtgcatt gaagcaatta tggaaaccgc ccaaaccggc aaaatcggcg
     2521 atggcaagat ttttgtgtat gatgtcgggc gggtgatccg cattcgtacc ggcgaagaaa
     2581 atgaagaagc gatttagttt tgcaaaaaat ccggcaaaaa cgaccgcttg cagggggatt
     2641 tccatctact ctttttacat taaattttgg atattaaatg aaaacaggct taaaatttct
     2701 ttgggtgagt ttaattgtaa tcatcattga cctttggtca aaatacattg tagtgcaaca
     2761 ttttgaattt ggtgaaagca ttaatatttt gccgattttt aacttcactt acgcccgaaa
     2821 ctacggggct gcctttagtt tccttgccga ccattccggc tggcaaaaat atttcttttt
     2881 agggctggcg gtagtgattt ccagtgcttt agtggtggct ctttggaaga atcaagcggt
     2941 caaaaaatta gaaaatattg cgtatgcctt aattattggt ggagcgattg ggaatgccat
     3001 tgaccgtgct tacaacggct atgtagttga tttccttcat ttttattggg atatttatca
     3061 ctaccctgtg tttaatattg ccgatattgc gatttgtgtg ggtgcaggct tactgatttt
     3121 agaagccttt ataaccaaaa aagaaccgaa aaaataagag tgattaaatg aaaattttat
     3181 tagcaaaccc acgcggtttt tgtgccggcg tggatcgagc catttcgatt gttgaattag
     3241 ccttagaaat tcacggtgca cctatctatg ttcgccacga agtggtacat aacaaatttg
     3301 tggtggatgg cttgaaagcc aaaggggcta tttttgttga ggagctacac gaagtgccgg
     3361 acgatgctat cgtgatcttc tcagcccacg gggtgtcgca agtagttcgc caagaagcca
     3421 aaaatcgtgg cttaaaagtg tttgatgcca cttgcccact cgtgaccaaa gtgcatatgc
     3481 aggttgcccg agccagtaaa aaagggacaa aagcaatttt aatcggtcac gaaggtcacc
     3541 ctgaagttat cggcacaatg ggacaataca ataaccaaga aggtggcatt tatttggtag
     3601 aatcggtgga agatattgcc aacttgccgg tttccaacaa cgatgaatta acttttatga
     3661 cgcaaaccac actttccatt gacgatacca ttggcgtgat tgaggcgtta aaagagaaat
     3721 atccggcaat tcaaggccct cgcaaaaatg atatttgtta tgctaccacc aatcgccaac
     3781 acgcagtgcg ggaactggca gaacaatcac aattagtgtt agtggtaggt tcaaaaaact
     3841 cctcgaactc aaatcgtttg gcggaactcg cctctcgaat gggtgtgatg tcaaaactga
     3901 ttgatggtcc gcaagatatt gatccaactt ggttggaggg tattgaaact atcggtatta
     3961 ccgccggtgc ttccgctcct gaagtgttgg tgcaatcagt aatttcgcat ttaaaaaccc
     4021 ttggcgtaac cgaagttgaa accttagtcg gcaacgaaga agacgtggtg tttgaagtcc
     4081 cgaaagagtt acgcatcaaa gaggtaaaat aatgacagaa atcaaccgct ttaaattaga
     4141 atgggcgtgc cgacgtggta tgcgtgagtt agacaaaatg attatgccgt tttaccaaaa
     4201 tcattttaat gaactcaatg aaacccaaca gcaagctttc gttgaaatgc tcaattacag
     4261 cgacccggaa ctgtttcgct gggtaatgct gcaagcacct gccccaaccg aagaaatcgc
     4321 tgaattgatt aggttaatgc gagataaaat tgagacctag agctaataga ttaacctctt
     4381 ctttggggta aatatatagc tacttacccc aaagaagact aaattcattc aacttttaca
     4441 aaataaccct aaactagaaa agttaatctt ccaatttaat aatatgttgc tgataagcta
     4501 ttaaaccttg tattacatgc actttctgct gataggtatt gacatagtga tcaacagcgg
     4561 gttttactaa taatgacgct gtttacctgt ctcatctggt gaccaaaggt aatcatcaaa
     4621 actaataacg cctccttttc tcactaaacg atgtgcaagt aaagcatcga acaacacatc
     4681 tggcgcttcg tgagatccat ctatgtaaat atagtcaaaa taatttatat atccatttgc
     4741 gagaagttca atcatttttt ggtgagaata gccacggtgc ttatataaca caacattttg
     4801 gaatttctgt tgcgcaagag tgacattatg gataaatcgt tgttctattt ctcccatgtc
     4861 ccaaactcct tgatgctctg ctcccccttc ccaactatca atacaatgaa tttcaacttg
     4921 tgattgatat ttcaatgctt cttcaatgaa aaagacagat gatctacctt caaatgatcc
     4981 aatttctaaa atcctccgag gttttacata ttcaaaaata gaagctaatg aaggaacatt
     5041 atgagtaaac caatcagagt taaaaatata ttggttggct gactggttgg aatggttgga
     5101 atggttggaa tggttggaat ggttggaatg gttggaatgg ttggaatg
//
LOCUS       DANLRW010000137         5119 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.138, whole genome shotgun sequence.
ACCESSION   DANLRW010000137 DANLRW010000000
VERSION     DANLRW010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5119
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.138"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(192..509)
                     /locus_tag="PXA71_002284"
     CDS             complement(192..509)
                     /locus_tag="PXA71_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5106350.1"
                     /translation="MLSRKEVLMTRRASMNLQQIIRNVVEYTYSYESGDKLSAEIHNT
                     LDNLSYFPRIGVIGSVENTRECFCRGYRIIYRETENQVQILAIIHCRQQYPTDYYRSA
                     FKA"
     gene            complement(502..660)
                     /locus_tag="PXA71_002285"
     CDS             complement(502..660)
                     /locus_tag="PXA71_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106351.1"
                     /translation="MTEEYQNFLIEQVKQGLDDIENGRVISLEESRQLCQKTIYETLQ
                     ELQGAVYA"
     gene            complement(714..869)
                     /locus_tag="PXA71_002286"
     CDS             complement(714..869)
                     /locus_tag="PXA71_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106352.1"
                     /translation="MLFKEKGYDEFLTQKIAKGRAELESGKGIPLEQATLLVQSTIEE
                     TAQELDD"
     gene            complement(1007..1264)
                     /locus_tag="PXA71_002287"
     CDS             complement(1007..1264)
                     /locus_tag="PXA71_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106353.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFYNYQQFMPEVEAKESLR
                     EQEPELDDGYNEEEYSEEEYSDENDASDENDNYDETYDDNF"
     gene            1278..1454
                     /locus_tag="PXA71_002288"
     CDS             1278..1454
                     /locus_tag="PXA71_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106354.1"
                     /translation="MAYVRIYQGEAYGWCAEKGEANTECPEALLVSLTGDIFEAVGGD
                     KLKGAKKWQPYKKE"
     gene            1458..1604
                     /locus_tag="PXA71_002289"
     CDS             1458..1604
                     /locus_tag="PXA71_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106355.1"
                     /translation="MDTTQKRVALFIIGLSVVMWLRKHNCCTVIFVLLLAALAFSYTM
                     EHLY"
     gene            1620..1826
                     /locus_tag="PXA71_002290"
     CDS             1620..1826
                     /locus_tag="PXA71_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106356.1"
                     /translation="MVKNVVHEEILHNRAELQQAVEKEEFCAKCDNSVVFHLRDNYHE
                     FTLGLDTILQCLHFAEEKGAIRIP"
     gene            1823..2599
                     /locus_tag="PXA71_002291"
     CDS             1823..2599
                     /locus_tag="PXA71_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106357.1"
                     /translation="MNIEYSLNHCQGDGVAFYGRLGTDDLIQLFNHLNPQKRKQKMFA
                     NLLTHIESWETHDDIGFEIIRNRFGYRYSHWNTMELYAKTADQLVFFNDSDARRNWYF
                     PTSKVYKYKGLWDEFIQDLEQYIKGTSREMESVGYQIIEASPYQTETVFKFNTENYLV
                     ELKRKPSEFYSELVDWAFGDMCDFEATIEQICQGQLCYADFEATVTDKKSEIQLGLAR
                     LSGISYSPNDRSFSGYRQELIGEAIASARHNAARFAYLHA"
     gene            2714..3126
                     /locus_tag="PXA71_002292"
                     /pseudo
     CDS             2714..3126
                     /locus_tag="PXA71_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484619.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
     gene            3140..3295
                     /locus_tag="PXA71_002293"
     CDS             3140..3295
                     /locus_tag="PXA71_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106358.1"
                     /translation="METRIVKVIYDDGDYFFTRINADEQAIRNYYAIGSSIGFDDIRK
                     IIAVEIL"
     gene            3375..4349
                     /locus_tag="PXA71_002294"
     CDS             3375..4349
                     /locus_tag="PXA71_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HDL5106359.1"
                     /translation="MNTQPKFDLYQHITDRIVVALEQGTAPWLKPWSHPECNMALPRN
                     AVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRPDE
                     REKLDEEGNIVYDEEGNPEMERHFFINKHNLFNLDQCENLPVELYDPVSEPKQPKSEP
                     NQYDIFAEIRQIIKGMDLQVEMKPSNRAFYQPGEDKVVMPEMKQFANAQAFHSVLLHE
                     MTHATGANNRLNREGITSGKAKFGNKVYAFEELIAEMGGAFLCAYLGFDTVPQNAAYI
                     ESWIRVLKEDKRAIVRASGKAREACQYMLDALNVAQLADKYDVFEEAA"
     gene            4436..4633
                     /locus_tag="PXA71_002295"
     CDS             4436..4633
                     /locus_tag="PXA71_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106360.1"
                     /translation="MTKSTEIPRGHDNWVITGRDNDGKWHKERFLYYSRREAIQQFRR
                     KHNCVGKHSVIESITPQFGWY"
BASE COUNT         1528 a          898 c         1065 g         1628 t
ORIGIN      
        1 tgagcttcat ttttagctcg cacttcatta aaaatagaga taaacgtttg tgctttttta
       61 agtagagaca ttgtggttct cctgtttttt gcacctaata ttattgaact atggtaggct
      121 tggcgagcat tgccttgagt tttaattcgg ctacggtcat ttttcttttt atttccattt
      181 tatagctcct gttatgcttt gaatgcagag cgataatagt cggttgggta ttgttgacga
      241 caatggataa tggctaaaat ttgcacttga ttttctgttt ctcgatatat aattctataa
      301 cctcggcaaa agcattctct agtattttct actgaaccta taacaccaat tcgtggaaaa
      361 taagaaagat tatccaaagt gttatgaatt tccgcagata atttatcacc actttcatag
      421 ctataagtat attccacaac attacgaatg atttgttgta aattcatact tgctctgcga
      481 gtcattaaca cctcttttcg actaagcata cacggctccc tgtagctctt gcaaggtttc
      541 atatatggtt ttttgacaca gttgacggct ttcttctaat gaaataacac gtccgttttc
      601 tatatcatca agtccttgtt ttacttgctc tattaagaag ttttggtatt cttctgtcat
      661 ggataactcc tatcattagt tgtatataga tatattagca atgttacaaa ttgttaatcg
      721 tccagttctt gagcagtttc ttcaatagtt gattgaacta acaatgtggc ttgctcaaga
      781 ggaatacctt ttccggattc taattcagct ctgccttttg caattttttg agtaaggaac
      841 tcatcgtagc ctttttcttt aaatagcatt ttatgttcct ttcacttatt acaaggcttt
      901 caggcatagg gattatgttc tcctaaatgc gaaatattgg aataatttac gcttaaagca
      961 atagagtgtc aagagcaggg tttttggaag tgtggtttgg gaatatttaa aaattatcat
     1021 cataagtttc atcgtagtta tcgttttcat cgctggcatc attttcatcg gaatattctt
     1081 cttcgctata ttcctcttcg ttatatccat catcaagttc aggttcttgt tcccttagtg
     1141 attctttagc ttcaacttca ggcataaatt gctggtaatt gtagaaaaaa gtgccatcgc
     1201 tgcctttttc ccaaagtccg gcgtagttgt attttacata ttcaggatca gcgtggcata
     1261 tcatccctaa ttgaggggtg gcatatgttc gtatttacca aggtgaggct tatggttggt
     1321 gtgctgaaaa aggagaggca aatacagaat gccctgaggc cttattggtg agtttaaccg
     1381 gcgatatttt tgaagcagtc ggcggagata agctgaaagg tgccaaaaaa tggcagcctt
     1441 acaagaaaga atgacagatg gatacgacac aaaaacgtgt ggctttattc atcattggat
     1501 tatctgttgt gatgtggcta agaaagcata actgctgtac agtgatattt gtattgttgt
     1561 tggcagcgtt agcatttagc tacacgatgg aacatttata ttagctgggg aactgaatta
     1621 tggtaaagaa tgtggttcat gaagagatat tacataaccg tgcagaatta cagcaagcgg
     1681 ttgaaaaaga agaattttgt gcaaaatgtg ataactcagt agtattccat ttacgtgata
     1741 attatcacga atttacgctt gggttagata ctatattgca gtgtctgcat tttgctgaag
     1801 agaagggagc tatccggata ccttgaatat tgagtattca ctcaatcatt gccaaggaga
     1861 tggagtcgca ttttatggtc gacttggtac agatgatcta atccagcttt tcaatcatct
     1921 caatccacag aaacgtaaac agaaaatgtt tgctaatttg ctaacgcaca ttgagtcttg
     1981 ggaaacccac gatgatattg gttttgaaat tatacgaaat cgctttgggt atcgttactc
     2041 gcattggaat acgatggagc tttatgctaa aactgcagat cagttagtgt ttttcaatga
     2101 tagtgatgct cgaagaaact ggtattttcc gacttcaaaa gtgtataaat acaaaggctt
     2161 gtgggatgag tttattcagg atttagaaca gtatattaag ggtacttccc gtgaaatgga
     2221 atcggtcggt tatcaaatta ttgaagcctc gccgtatcaa acggaaaccg ttttcaaatt
     2281 taatacggaa aactatctag tagaactgaa acgtaaacct tctgagtttt attcagagct
     2341 tgttgattgg gcatttggtg atatgtgtga ttttgaagca actatagagc agatttgtca
     2401 agggcaactc tgttatgctg attttgaagc aactgttacc gataagaaaa gtgaaattca
     2461 gttaggtctt gctcgcttga gtggaataag ttactcgccg aatgaccgtt cgtttagtgg
     2521 ttatcgacaa gagcttattg gtgaggcgat tgcctctgct cgccataatg cagcacgttt
     2581 tgcctacttg cacgcctaat ttgcagattt gtacttcaat ttgaccgctt gtagtggtta
     2641 attttcaccc cgtggggaaa tattttccct attgggcaag atgtttctcc actttttaat
     2701 ttggagaaat gtgatgaaaa atgaacacaa tttagagcaa cttaaatata tttgggataa
     2761 ccgcaacctt gaaaataaag cctatcaata cctgtttcac atttgcattg agccgatgaa
     2821 aaaaggagat tggaatcgtt atacgatttg gcttaatttt cacggcaact taatcaacgt
     2881 gtcagacgtt gtatatcgag ttgtggaatc tcaaaagctc aaggatgaca tcaaaatgtg
     2941 gtatgacaat aataccattg tcgtccgata aaagttgaaa caacaggctt catctcatat
     3001 ttactgcacc agttctatca ggggatagcc tatattttac tggaacaggg aatgattact
     3061 gaaactgaag cagccgagaa aagttataac ttcagagctg caaattgttt tcaacgtttg
     3121 ctttaatgga ggtgagataa tggaaactcg cattgttaaa gttatttacg atgatggtga
     3181 ttatttcttt acccgaatca atgctgatga acaggctatc cgtaattact acgccatagg
     3241 cagttcaata ggttttgatg atataagaaa aattatcgct gttgaaattt tataaaccac
     3301 ccatagggga aactatttcc ccatagggtg atagcgtttc cccatttttc tacccgaact
     3361 ttggagaaac acttatgaac actcaaccta aatttgattt ataccaacac atcactgacc
     3421 gaattgttgt agcactggaa caaggtacag ccccgtggtt aaaaccgtgg agccatccgg
     3481 aatgcaatat ggcattacct cgcaatgcgg tatctaaccg cttgtattcc ggtatcaata
     3541 cactcttact ctggattgct actgctgaac atggttacaa acagtgcaag tggattacag
     3601 caaaaaaagc caatgaactc ggcggatata tccgtaaagg ggaaaaagct actgtggtga
     3661 tgaactaccg tcctgatgag agagagaaac tcgatgagga agggaatatt gtgtatgacg
     3721 aggaaggaaa tccggaaatg gaacgacact ttttcattaa taagcacaat ctgttcaatc
     3781 tggaccagtg tgaaaattta ccggtggaac tgtacgatcc tgtatcagaa ccgaaacaac
     3841 ctaaatctga gccaaaccaa tacgatattt ttgctgagat tcggcagatt atcaaaggaa
     3901 tggatttgca ggtggaaatg aagcctagca atcgggcatt ttatcaacca ggtgaagata
     3961 aggtcgtaat gccggagatg aagcagtttg caaatgctca agcgtttcat agtgtattgt
     4021 tacacgaaat gactcacgca acgggggcaa ataatcggct taatcgggaa ggtattactt
     4081 ccggaaaggc taaatttgga aacaaagtct atgcttttga ggagttgatt gctgaaatgg
     4141 gcggtgcatt tttatgtgcc taccttggtt ttgatactgt gcctcaaaat gcggcgtata
     4201 ttgaaagttg gattcgagta ttgaaagaag ataaacgggc gattgtccgt gcttccggaa
     4261 aagctcgtga agcctgccaa tacatgttag acgcattaaa cgtcgcacag ttggctgaca
     4321 aatacgatgt atttgaagaa gctgcttaac aaatttgccg aaaggcatat ctcaagggga
     4381 gacctatccc tttgggcata gtgtttccct attttttatt aaatggagaa aagctatgac
     4441 aaaatcaact gaaatacctc gtggacatga taactgggtt attacaggca gagacaatga
     4501 tgggaaatgg cataaagaac gttttcttta ttattctcgc cgtgaagcca tccaacagtt
     4561 tcgtcgaaaa cacaactgcg taggtaaaca tagtgttatt gaatcaataa cacctcaatt
     4621 tggctggtat taaccggctt tcccgtgggg agatactctc ccttcggagc attgtgtctc
     4681 cctttttatt cacttaacta gaggacacaa tgttcaatct aaacttattt aaacgcccta
     4741 ttgagctttc aacgcttgaa tcttggtcta aattctgtga tgatgtcggt aaagttgcat
     4801 ttattgcgat acctccgatg atttatagta attatgatct atgtatcaaa ataggaaaca
     4861 taagtgcttt attggcaatt acctatggat tcttattatc aggcaggact atccgtcaat
     4921 ttattgagaa ggagaaatca agatgggatt aacaatcggc ttatggatca ttgcttttat
     4981 aggctttgca ctggtttttt gggcaaatag cttactcaaa gagcaagatg aacgccttaa
     5041 acagctaaaa aaatagctca actttacact caatacggca catttggtgc cgtatttcat
     5101 tcttatccta attaaaaat
//
LOCUS       DANLRW010000138         5097 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.139, whole genome shotgun sequence.
ACCESSION   DANLRW010000138 DANLRW010000000
VERSION     DANLRW010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5097
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.139"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            33..2837
                     /locus_tag="PXA71_002296"
     CDS             33..2837
                     /locus_tag="PXA71_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDL5106361.1"
                     /translation="MYKIKHSFNKTLIAISISSFLSIAYATESIENPQPIIQLSESLS
                     SKYSGKGVKLGVMDEGFMVKHPRHSSHLHPLIHQLTTPEGEVRIYDASYPQFEVNPVE
                     KEDGIDLIPSLETHGAGVAGIIAAQADKTLGDGYSGGIAKGAELYVATKSYKRTLEKV
                     IQDAKKELENAKDEEDEKTPSLDQMAKNDLLASKEKEMAIERAEWASGLNKLLDNNVF
                     AINNSWNPFSISDDINVVDKFYQSIKQNKHNPLLQAIMRAKNSNTLLVFAAGNESKKQ
                     PGVMALLPRYFPELEKNLISAVAVDKEQKIASYSNHCGASKNWCVAAPGDLHVLIGVA
                     DEHKKPQYGLTKEQGTSFSAPAITASLAVLKERFDYLTATQIRDTLLTTATDLGEKGV
                     DNVYGWGLINLKKAVNGPTQFLNDETITVTRDDHWSNPLASQFKITKKGDKSLHLDGE
                     NHLDTVAVEEGRLALNGKTKVKTISNHANLAVNGTEVEQNYSSSGQSQLEVLGKSGLI
                     ANAQANIHLAGSLKIDDKLTEKTEAGDVSATVVQLKDKATYQGGFTQLVENENLAKRG
                     LIQDLYFKESEIIAKVNKPLTDEKADTNGQAGLALLNALRTTPIAYRRSWYNGWLQSA
                     LEQRKLDNLHYAVSNNIYADSLELLRSQNAKGLTQAQQHLFTAYHTPLQTTVWAEHLN
                     QKQSASSKHTDVKHHQSQLGVNHKLADKTVLSATLSQQKNRLEKPFAQATLKQTALNI
                     GLRYHLDNAWFSEATLQFARQKYQQSRRFASHQLGTAETRGSTLGGEMRIGYQFMPNQ
                     WIIEPSLGVQWIQTKMNGLNESGELATQTAAMRYRDVNIVPSVKLQRTFQLEQGSISP
                     YIGLNYLHRLNGKITKITSNIAGKTLHSEATTKRNRQLNGEVGVKLHYKNWFTAMNLD
                     YSRVKSANLFGWKVNVGFSF"
     gene            complement(2978..3415)
                     /locus_tag="PXA71_002297"
     CDS             complement(2978..3415)
                     /locus_tag="PXA71_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HDL5106362.1"
                     /translation="MDWFFNWIGWSILGFVLLALELVLPGVFIMWWGFASLILAFIVA
                     LFTLGQALQIALFAIIATIFSLIWWKYQHGKDKKEDQSSSLNSREHAMLGAQGFVVEI
                     LPNGIARGKFGDTTWRVIGNNLQVADKIEVQKVEGITLFVRKQ"
     gene            complement(3451..4371)
                     /locus_tag="PXA71_002298"
     CDS             complement(3451..4371)
                     /locus_tag="PXA71_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH/Band 7/PHB domain protein"
                     /protein_id="HDL5106363.1"
                     /translation="MNFDLPIVSIAFVVLVLVALSSTIKIVPQGYHWTVERFGRYTKT
                     LSPGLNIVVPFIDRIGRKMNMMEQVLDIPSQEVISRDNASVAIDAVCFVQTVDARRAA
                     YEVNHLEQAIVNLTMTNMRTVLGSMDLDDMLSQRDLINGRLLSIVDEATNIWGVKVTR
                     IEIRDVRPPKELVAAMNAQMKAERNKRADILEAEGIRQAEILRAEGEKQSRILKAEGE
                     RQEAFLQAEARERAAEAEAKATQMVSEAIAKGDTTAINYFIAQKYTEALKEIGSSDNS
                     KVVLMPLEAGNLIGSVAGIAEILKSNKTSS"
     gene            complement(4387..5076)
                     /gene="ung"
                     /locus_tag="PXA71_002299"
     CDS             complement(4387..5076)
                     /gene="ung"
                     /locus_tag="PXA71_002299"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDL5106364.1"
                     /translation="MKTWTEALGEEKQKAYFQQILQYVHNERLAGKVIYPPQNEVFSA
                     FALTEFSDVKVVILGQDPYHGPNQAHGLAFSVKPPVAPPPSLVNMYKELSEDIEGFQI
                     PPHGYLIDWAKQGVFMLNTSLTVEQGRAGSHSQIGWEIFTDKVIAQLNQHRDNLVFLL
                     WGSHAQRKGQFIDRNRHCVLASPHPSPLSAYRGFFGCKHFSKANNYLISQGISPINWQ
                     LSVDVSYSSTH"
BASE COUNT         1696 a         1027 c          946 g         1428 t
ORIGIN      
        1 gtaaaataag cttatttttt ggaggtaaaa ttatgtataa aataaagcat tcatttaaca
       61 aaacacttat tgcaattagc atttctagtt ttttatctat tgcatacgct acagaatcaa
      121 tagagaatcc acaacctatc attcaattat ctgagagcct cagctcaaaa tatagtggca
      181 agggtgttaa actaggcgta atggatgagg gcttcatggt taaacaccct cgccatagtt
      241 cacatcttca tcctcttatt catcaattaa caacacccga aggcgaagta agaatctacg
      301 atgcaagtta ccctcaattc gaggtaaacc ccgtagaaaa agaagatgga attgatctta
      361 ttccttctct tgaaacacac ggtgcaggtg tagctggtat tattgccgct caagcagata
      421 aaactcttgg tgatggctat agtggtggta ttgcaaaggg agctgagctt tatgttgcaa
      481 cgaagtcata taaacgaact ttagaaaaag ttattcaaga tgctaagaaa gaattagaaa
      541 atgcaaaaga cgaagaggat gaaaaaacgc caagtctgga tcaaatggca aagaatgact
      601 tattagcaag caaagaaaaa gaaatggcaa ttgaacgtgc tgaatgggca tccgggctga
      661 ataaattact agataataat gtttttgcaa tcaataatag ttggaatcct ttttctatta
      721 gcgatgacat caatgttgta gataaatttt atcaatctat caagcaaaat aagcacaatc
      781 cgctacttca agctattatg agagccaaaa atagcaacac cttattagtc tttgctgctg
      841 gtaatgagag caagaaacag ccaggcgtaa tggctcttct accacgttac tttcccgagc
      901 ttgagaaaaa tttaatttct gccgttgcgg tagataaaga acaaaaaatt gcttcatact
      961 ctaaccactg cggagcaagt aaaaactggt gtgtagcagc accgggcgat ttacatgttt
     1021 taattggcgt tgctgatgaa cataaaaaac cacaatatgg cttaacaaaa gagcaaggta
     1081 cgtcattttc agcacctgct ataactgctt cattagcagt attaaaagaa cgctttgatt
     1141 atctgactgc gactcaaatt cgcgatactt tattgactac cgccactgat ttaggtgaaa
     1201 aaggggtcga taatgtttat ggctggggtc tcattaacct gaaaaaagct gttaatggcc
     1261 caactcaatt cctaaatgat gaaacgatta ccgtaactcg tgatgaccat tggtcgaatc
     1321 cactcgccag ccaatttaaa attacaaaaa aaggggacaa atcactgcat ttagacggcg
     1381 aaaatcattt agatacggta gcagttgaag aaggtagatt ggccttaaac ggtaaaacta
     1441 aggtgaaaac aatcagtaac catgcaaatt tagctgtcaa tggaaccgaa gttgagcaaa
     1501 attattcttc gtctggacaa agccaattag aagtgttggg caaatctggg ctaattgcca
     1561 atgctcaagc caatatacat ttagccggct cgttaaaaat tgatgataaa ttaacagaaa
     1621 aaaccgaagc aggtgatgtt tcagcgaccg tagtacagtt gaaagataaa gcaacttatc
     1681 aaggcggatt tacacaatta gtcgaaaacg agaatttagc caaacgaggg ttaatccaag
     1741 atctctattt caaagagagc gaaattatcg caaaagtgaa taagccacta actgatgaga
     1801 aagccgatac aaacgggcaa gccggtttag cattattaaa tgcgttaaga actacaccta
     1861 ttgcctatcg ccgtagttgg tataacggtt ggctgcaatc tgcactcgaa caacgtaaat
     1921 tagataatct gcactatgct gtatctaaca atatttatgc agatagcctt gaattgctac
     1981 gtagccaaaa tgccaaaggc ttaacccaag cacagcaaca tttgtttacg gcataccata
     2041 caccactgca aacgactgtt tgggctgaac atttgaatca aaaacaatca gcctcatcga
     2101 agcataccga tgttaaacac caccaatcac aattgggagt aaaccacaaa ctggcagata
     2161 aaacggtact tagtgcaaca ctttcacagc aaaaaaaccg cttagaaaaa ccatttgcac
     2221 aagctacctt aaaacaaaca gcattaaata ttggcttacg ttatcattta gataacgctt
     2281 ggtttagtga agctacattg caatttgctc gccagaaata tcaacaaagc cgtcgatttg
     2341 ctagccatca actaggtact gcagaaacca gaggttcaac gctcggtggt gaaatgcgga
     2401 tcggttatca atttatgcca aaccaatgga taattgaacc aagccttggc gtacaatgga
     2461 ttcaaaccaa aatgaatggt ttaaatgaaa gtggcgaact tgcgactcaa acggctgcaa
     2521 tgcgttatcg tgatgtgaat attgttccaa gcgtgaaatt acagcgaact ttccaacttg
     2581 agcaaggctc tatttcccct tatatcgggc taaattactt gcatagatta aatggaaaaa
     2641 taaccaaaat taccagtaac attgcaggaa aaacactgca tagtgaagca acgacgaaac
     2701 gtaatcgcca attaaacggc gaagtcgggg tgaaactgca ttataaaaat tggtttactg
     2761 cgatgaattt agattacagt cgagtgaaat ctgcaaacct atttggttgg aaagtaaatg
     2821 ttggctttag tttctaactt attatggtgg gacacaagcg gttaatttag ggtgaaaatt
     2881 tgcaaatttc actctatttt caaccgcttg agagaaaaaa ccttgaacaa ctgttcaagg
     2941 tttttgttta gtgttctatg actaaataag aaaaaactta ttgcttacgg acaaataagg
     3001 taattccctc cactttctgg acttcaatct tatctgctac ttgtaaatta ttacctataa
     3061 cacgccaagt cgtatcacca aattttcctc gagcgatgcc attaggtaag atttcaacca
     3121 caaagccttg agctcctagc atagcatgct ctcgagagtt aagggaactg ctctgatcct
     3181 ctttcttgtc ttttccatgc tgatatttcc accaaataag actaaaaata gtcgcaatta
     3241 tcgcaaataa cgcaatttgt aacgcttgcc ctaatgtaaa aagtgcaacg atgaaagcaa
     3301 gaataagcga ggcaaatccc caccacataa taaagacacc cggtaatact aattctaatg
     3361 caagtagtac aaagcctaat atgctccagc caatccaatt aaaaaaccag tccatactcc
     3421 ctccatatac tcaattaatc cggttttagg ctatgagctt gttttattgc tttttaaaat
     3481 ttcagcaata ccagcaacag aaccaatcaa atttccagct tctaacggca taagtacaac
     3541 tttactgtta tctgaagaac ctatttcttt caaagcttcg gtgtattttt gtgcaataaa
     3601 atagttaatc gctgtagtat cgcctttagc aattgcttca gaaaccattt gagtggcttt
     3661 agcttccgct tctgcggctc gttcacgagc ttctgcctgt aagaatgctt cttgtctttc
     3721 accttctgct tttaaaatac gagattgttt ttccccttca gcccgcagaa tttcagcttg
     3781 tcgaatccct tctgcttcaa gaatatcagc acgtttatta cgctcagctt tcatttgagc
     3841 gttcattgcc gcaaccagct ctttcggtgg acgaacatcc cgaatctcaa tacgggtgac
     3901 ttttactccc caaatattag tcgcctcatc gacaatggaa agtaatctac cgttaattaa
     3961 atcacgctga gagagcatat catctagatc catagagccg agcacggtac gcatatttgt
     4021 catggttaaa ttaacaattg cttgctctaa atgattcact tcataggcag ctcggcgagc
     4081 atcaactgtt tgaacaaaac atacagcatc aatcgcaaca cttgcattat cacgtgaaat
     4141 aacctcttgc gatggaatat ctaaaacttg ctccatcata ttcatttttc gcccaatacg
     4201 atcaataaaa ggtacgacaa tgttcaaccc cgggcttagc gttttagtat aacgaccaaa
     4261 acgttctact gtccaatgat agccctgtgg cacaatttta atagtcgaac ttaatgcaac
     4321 taaaacaagc acaacaaatg caatactaac aatcggtaaa tcaaaattca tcgtttgctc
     4381 cttaaactaa tgtgttgaag aataactaac gtctactgat aattgccaat taattgggga
     4441 tattccttga gaaatcaagt agttattggc tttagaaaaa tgtttacaac caaaaaatcc
     4501 acgatatgcg gaaagtggtg atgggtgcgg agaagctaac acacaatggc gattacgatc
     4561 gataaattgc ccctttctct gagcgtggct tccccaaagt agaaagacta aattatcacg
     4621 gtgttgattt aattgtgcga tcactttatc ggtaaaaatt tcccaaccaa tttgtgaatg
     4681 cgaaccggct ctaccttgct caaccgttaa gctggtgttt aacataaata ccccttgttt
     4741 tgcccagtca attaaatagc catgcggtgg aatttgaaat ccttcaatat cttcagataa
     4801 ttctttatac atattgacca gagaaggtgg cggggcaacc ggcggtttaa ctgaaaaggc
     4861 taatccgtgg gcttgatttg ggccgtgata aggatcttgc cctaaaatta ctactttcac
     4921 gtcactaaat tcggttaagg caaaagcact aaacacctcg ttttgcggag gatagatgac
     4981 tttgccggct aatcgttcgt tatgtacata ttgtaaaatt tgttgaaaat acgctttttg
     5041 tttttcttcg cctaaagctt ctgtccaagt tttcataaaa ccaccaagtg tatattt
//
LOCUS       DANLRW010000139         5040 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.140, whole genome shotgun sequence.
ACCESSION   DANLRW010000139 DANLRW010000000
VERSION     DANLRW010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 5040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5040
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.140"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..1774
                     /locus_tag="PXA71_002300"
     CDS             <1..1774
                     /locus_tag="PXA71_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL5106365.1"
                     /translation="AGIQKTGLNYVFLMRADGANQRLATIPVIASLLNRPKITFTAEW
                     TSERAYLLVGVNGTYETTDWLAFHSVKLEKGNVATDWTPAPEDVDSAVSAVSAKIDTI
                     QETLANADSALSSRIDTVNASVGSNSSKITQVSNAVASVDGKLSATHTIKTETIAGGR
                     KAIAGIAFGATADNRNAESSVIVMADKFEVVKNAQDGTPVRLFGVVENKVAINGNLIA
                     TGSISGDHINANSVRTAVLTAGAIKTEHLAAGQISADKLAIGLGGNLLVNPIFATPDL
                     SIAPFGWNYWRGEVGDRLNIDTRTIFNRNEQDNYGLKNGGLPNELVFSMRYSTTKETS
                     DTGRIGWLSQDINVVPNKKYIASVWLACHRGQAKLVIENIEKPGGAYLGRIGNSEVIT
                     GYSAHQGEFKNMKRVKVVFTAPTSGCIRFALRLDNIQGKANPFLFARRPMLEEASDNV
                     TDITQPSPWQNAGVTAIHGGSIVTNTVTAQQIAANTITANEIAAGTIAARNMAANSIN
                     ASHIVGSSITADKLNVNNLAAISANLGAITAGSININNRFKVSNAGVVEMRANSGNVG
                     MVMNNNSIIVYDEQGRVRVKMGKL"
     gene            1774..2217
                     /locus_tag="PXA71_002301"
     CDS             1774..2217
                     /locus_tag="PXA71_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106366.1"
                     /translation="MLIGILCIIALAVLGLLFYFHKKKRKKVNKGVNMAEYGIQTFDT
                     ANVSTFSTNERLFKYIGTKNIKYGKFSFTVTEKYEGQLVFIISMLHSVHRKQATGYKT
                     NIPNLIHLENVSINDKTISGEVVCIFPFSLPADDSDYIQIVYGAY"
     gene            2218..2817
                     /locus_tag="PXA71_002302"
     CDS             2218..2817
                     /locus_tag="PXA71_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106367.1"
                     /translation="MSYGLSTFNINENFRSLSLQRKGRANFSNKIATIQAASDEIIVI
                     KYSDGQVCLLYRENGIATLATENATFAEYLIFSTNVPKSGGYGIEVYNSAGNVVFSSN
                     HKFLRPIEYVDLNPSKNVFRFTGQANRQYGIILSNFGFDFVINYDNGYSTSRSAKVSG
                     NFIEFGFCKYHYSGLYKTGMSYNSKAMYFNALVVDITGY"
     gene            2932..3225
                     /locus_tag="PXA71_002303"
     CDS             2932..3225
                     /locus_tag="PXA71_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106368.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTN
                     FVIITSEYKYIDAQSAKAITDAPLTKEDIGKTPTQIMLGRIYKHLKETGQIVV"
     gene            3386..3625
                     /locus_tag="PXA71_002304"
                     /pseudo
     CDS             3386..3625
                     /locus_tag="PXA71_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249173.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(3772..4290)
                     /locus_tag="PXA71_002305"
     CDS             complement(3772..4290)
                     /locus_tag="PXA71_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106369.1"
                     /translation="MTTQVTPQIMRIIGQIVAATYGDDVPTNVQTIILRYPIRGIGFI
                     SSRRELSINNGEIARLMDKIPGDLEDPKDGMPFDCQGAFWLGYYQYCKLSNDVKNYTS
                     KELSIIGESLYGTQWQSNLARDLRLSDARRVREWVAGERKIPFGVWADLTELVKAKKA
                     NLSSILKKLTID"
     gene            complement(4360..4950)
                     /locus_tag="PXA71_002306"
     CDS             complement(4360..4950)
                     /locus_tag="PXA71_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106370.1"
                     /translation="MTTQITTAQINDLLKSHDIQGYANEWQGRRIYINLSAKNNESRG
                     DRNYQLYIDLATGELVSKLGKGLTTREFDAAVKAFENAFNAKDTAENTSPAESKETEQ
                     ENKQETTKLVITKPTLKGSEKQIAWADEIINLFIAKIGDTSIPVTATQEQITQAQAMV
                     DNFFAMTNAGKWIEKFKGLNDSSEPKQFWLSVKYGW"
BASE COUNT         1547 a          915 c         1030 g         1548 t
ORIGIN      
        1 agccggcata caaaaaacgg ggctcaacta tgtattcttg atgcgtgctg atggggctaa
       61 tcaacggtta gcaacaatac ctgttatagc cagcctatta aacagaccta aaataacctt
      121 tactgccgaa tggacaagtg agcgagccta tctgcttgtt ggtgtaaatg gtacttatga
      181 gaccacagat tggttagcgt ttcacagcgt caaacttgaa aaaggcaacg tagccacaga
      241 ctggacgcca gcacctgaag atgtggacag tgcggttagt gcagtttcgg ctaaaattga
      301 tactattcag gagactttag cgaatgccga ctctgcatta agctctcgca ttgatacggt
      361 caatgcctca gtcggatcaa actcatctaa aattacccaa gtcagcaatg cggtagcaag
      421 tgtggacggc aaattatctg ctacccatac catcaaaacc gaaaccattg ccggtggacg
      481 caaagcgatt gccggtattg catttggtgc aacggcagat aaccgtaatg cggaatcttc
      541 tgtgattgtg atggcagata aatttgaggt cgtgaaaaac gcccaagacg gcacgccagt
      601 aagactattt ggcgtggtag aaaataaagt agcgattaat gggaatttaa tcgcaacagg
      661 ctcgatttca ggagaccaca tcaatgcaaa ttccgtcaga actgctgtat tgactgcagg
      721 agcgattaaa acggagcatt tggcagcagg gcaaatatcg gcggataagt tagcgattgg
      781 gctaggtggg aatttgctgg ttaatcctat ttttgcaaca cccgatttgt caatagctcc
      841 gtttggctgg aactactggc gaggagaagt tggtgatcgg ctaaatattg acacccgtac
      901 tattttcaat aggaatgaac aagataatta cggactaaaa aatggaggac taccaaatga
      961 gttagtattt tcgatgcggt atagcactac aaaggaaacc tctgatactg ggcgaattgg
     1021 gtggttatct caggatatta atgttgtgcc taataaaaaa tatattgcct ccgtatggtt
     1081 agcttgtcat cgtgggcaag ctaaattagt cattgagaat atcgaaaaac ctggtggtgc
     1141 ttatttaggt cggataggca acagcgaggt aattactggc tatagtgctc atcaaggcga
     1201 atttaaaaat atgaaacggg ttaaggttgt atttactgca cctacttcag gctgtattcg
     1261 tttcgcatta cgattagata atattcaagg taaagctaat ccatttttat ttgctcgtag
     1321 accaatgctt gaggaggcta gtgataatgt tacagatatc actcagccta gcccttggca
     1381 aaatgccggt gtaaccgcta tccacggtgg ctcaatagtt actaataccg ttactgctca
     1441 acaaattgca gcaaatacca ttaccgccaa cgaaatcgca gccggcacga ttgcagctcg
     1501 aaatatggca gcaaactcga ttaatgcaag tcatattgta gggagttcga tcactgcgga
     1561 taagctaaat gtaaacaatt tagcggcaat atcagcgaat ctcggagcta ttacagctgg
     1621 ttctattaat atcaataata gattcaaggt aagtaatgct ggagtagtcg aaatgcgagc
     1681 caatagtgga aatgttggta tggtaatgaa taacaatagt attattgttt atgatgaaca
     1741 aggtagggtt agagtaaaaa tggggaaatt atgattctaa taggtatttt atgtattatt
     1801 gcattagcag tcttagggct gcttttttat ttccataaaa aaaaacgaaa aaaagtaaat
     1861 aaaggggtaa atatggctga atatggtatt caaacttttg ataccgctaa tgtctctaca
     1921 tttagtacca atgagcgatt atttaaatac attggaacta aaaatattaa gtatggtaaa
     1981 ttttcattca cggtaacaga aaagtatgaa ggacaacttg tatttatcat tagtatgtta
     2041 cattcagttc accgaaaaca agcaacaggt tataaaacga atattcccaa tcttattcat
     2101 ttagaaaatg tttcgatcaa cgataaaacg atttcaggag aagttgtttg tatttttcct
     2161 tttagtctac cggctgatga ttcagattat attcagattg tatatggagc atattaaatg
     2221 agttacggac tatctacttt taacatcaat gaaaatttca gaagtttatc cttacaaaga
     2281 aaaggacgag ctaacttttc taataaaatt gcaactattc aggcagcgtc agatgaaatt
     2341 attgtcatta aatattctga tgggcaagta tgtttgctat atcgagaaaa tggtattgcc
     2401 acattagcta cagaaaacgc aacatttgct gaatatctca tttttagtac aaatgtaccg
     2461 aaaagcggag gttacggcat agaggtttat aactcagcag gaaatgttgt attttcatca
     2521 aaccacaaat ttttaagacc tattgaatat gtcgatctaa atccatcaaa aaatgttttt
     2581 agatttacag ggcaagcaaa taggcaatat ggcattatct tatccaattt tggctttgat
     2641 tttgtcatta actacgataa cggatattca acatctagat ctgccaaagt aagtggtaat
     2701 tttattgaat ttgggttctg taaataccat tattctggtt tgtataagac gggaatgagt
     2761 tataattcaa aagcaatgta ttttaatgct ctggttgtag atataacagg ctattaaaca
     2821 ttaaacgcct tcatttaata gaggcgaact aaaattctga ttacacattc atcgccgctt
     2881 gtagcaatac aagcggtctt tttttatcaa caatccacaa aaggaaaaat tatgacaact
     2941 tttaacaaaa tcttaaaccc aatgtactca actatcgcaa gttactcaac tcaagatgac
     3001 ggctcactca atgctaagta tgttgttggc acaggtgatg ataccgatgg cgaggtaaca
     3061 aactttgtaa tcatcacaag tgagtacaaa tatattgatg ctcaatcagc caaagcgatt
     3121 acagatgcac cgctaacaaa agaggatatt ggcaaaacgc caacgcagat tatgttaggt
     3181 cgtatctata agcacttaaa agagacgggg cagattgtag tgtaggggtc taaatgcaaa
     3241 agcataaatt taagtttttc agaggcgatg acgtaagtta tcgccttttt tttaggcaaa
     3301 caaatggcga gcctgtaaat ttagagggta ttaggctgga tttacacgcc atagtagagg
     3361 gcagcacaga gcctcaaatt gagctaaccg tcgattagtg gttgtggatg agcaatcatt
     3421 aaaactgcaa gagttaaagc agactattaa tgagcaaacc gagcaaatta aaacactcgg
     3481 aacagtggta aataaactta ttgatgcatt acaacagtca caaagtttaa atgtaagatc
     3541 agaatctgct gtagcagcaa ccgaaaatca agatcattta actgatggtg tgcagtatca
     3601 aggcccagga cgtgctagag cttaactctg ttaacatctg cactcaaaac ggctatagct
     3661 ctagccgttt tttgtaattt ttcgcacgtt ttaacaggca aatttggcaa aattagccat
     3721 tgtgatttta ttttctataa ttaagccccg agaggggctt taaagtcagt gctaatctat
     3781 tgttaatttt ttaagaattg atgataagtt agcttttttg gctttaacca attcggtcaa
     3841 atcagcccaa accccgaaag ggattttacg ttcaccagcc acccattcgc ggacacggcg
     3901 agcatcagat aatctcaaat ctctcgctag attagactgc cattgagtgc catacaatga
     3961 ctcgccaatg atggatagct cttttgatgt gtaatttttt acatcgttac ttaatttgca
     4021 gtattgatag tatccaagcc aaaacgcccc ctgacaatca aaaggcatcc cgtctttagg
     4081 gtcctcgagg tcgcctggta ttttatccat taatcttgct atctctccat tgttaataga
     4141 tagctctctg cgactagaga taaaccctat ccctcttata gggtatctca agattattgt
     4201 ctgtacgttt gttggcacat cgtcaccata agtagcagcg acaatttgcc cgataatgcg
     4261 cataatttgt ggtgttactt gtgtagtcat aataatctcc agttatctgt ttgttttagc
     4321 cgtaagcctt tgctcttacg gcttatttgt tatctcaatc taccatccat attttacgga
     4381 taaccaaaat tgctttggtt cgctactatc atttagacct ttaaattttt cgatccactt
     4441 tccagcgttt gtcattgcaa aaaaattatc taccattgct tgagcttgag taatttgttc
     4501 ttgcgttgct gttactggga tagaggtatc accaatcttc gcaataaaaa gattgatgat
     4561 ttcgtctgcc caagcgattt gtttttcaga gccttttaat gttggttttg tgattacaag
     4621 cttagttgtt tcttgtttgt tctcttgctc tgtttctttg ctttctgctg gcgatgtatt
     4681 ttcagcggtg tctttagcat taaaagcgtt ctcaaatgct tttacggcag cgtcgaactc
     4741 tcttgttgtt aatcctttgc caagtttgct cactaactca cctgtggcta agtcaatgta
     4801 caactgataa ttccgatcac ctctgctttc gttatttttt gctgaaaggt taatgtaaat
     4861 gcggcgacct tgccattcgt tggcgtagcc ttggatatcg tgagatttta ataagtcgtt
     4921 gatttgtgcg gttgtaattt gagttgtcat tttagccccc tttggctgat ggttattagc
     4981 tggctcccta gccttgcttt atgagcctaa ttataggcgc ataataattt tattgcaaga
//
LOCUS       DANLRW010000140         4928 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.141, whole genome shotgun sequence.
ACCESSION   DANLRW010000140 DANLRW010000000
VERSION     DANLRW010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4928
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.141"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..584
                     /locus_tag="PXA71_002307"
     CDS             <1..584
                     /locus_tag="PXA71_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDL5106371.1"
                     /translation="YTTIMQRISGAKQIDSLTVKIKDDIESQTAEKSIAELLVAKHGK
                     KDFFIMNSDTIKQTITSTTNTMTLLISSIALISLIVGGIGVMNIMLVSVTERTREIGV
                     RMAIGAKQRNILQQFLIEAVVICLIGGVIGILLASAIIWAFNTLGTNFKMMLSPESVI
                     IAVLCSTLIGVVFGYIPARNAAQLNPITALAQE"
     gene            668..1438
                     /locus_tag="PXA71_002308"
     CDS             668..1438
                     /locus_tag="PXA71_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDL5106372.1"
                     /translation="MTITNTELEQILNTKLNSSAINDYAPNGLQVEGKREIKKIITGV
                     TATLPLIEKAIEKNADAILVHHGYFWKSENPCIRGMKGKRIKQLLVNDINLFGYHLPL
                     DIHSELGNNAQLAKHLGVKNLQGLEDRPNSIPMYGELENPISANELKQKLEKTLQRTV
                     ILCDEFVHSPQKMIKTIGICSGGGQGYIDLAFEKGCDAFISGEISEQTTHSAREQGIY
                     YFACGHHATERDGVKALGEWLAVEYGLDVEFIDIDNPA"
     gene            complement(1519..2649)
                     /gene="nrdB"
                     /locus_tag="PXA71_002309"
     CDS             complement(1519..2649)
                     /gene="nrdB"
                     /locus_tag="PXA71_002309"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HDL5106373.1"
                     /translation="MAYTTFSQHKNDQLKEPMFFGQNVNVARYDQQKYEIFEKLIEKQ
                     LSFFWRPEEVDVSQDRIDYAQLPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLVSI
                     PELETWIETWTFSETIHSRSYTHIIRNIVNDPSIVFDDIVTNEEIIKRAKDISAYYDD
                     LIRDSQLYSLYGEGSYQVDGKTCEVSLRSLKRQLYLCMMSVNALEAIRFYVSFACSFA
                     FAERQLMEGNAKIIKFIARDEALHLTGTQHILNIMAYGNDDPEMAEIARECRQEAYEL
                     FLSAAEQEKAWAEYLFKDGSMIGLNRDILVQYIEYITNIRMQAVGLPLPFKARSNPIP
                     WINAWLVSDNVQVAPQEVEVSSYLVGQIDAKVDSRDFGDFEL"
     gene            complement(2676..>4928)
                     /gene="nrdA"
                     /locus_tag="PXA71_002310"
     CDS             complement(2676..>4928)
                     /gene="nrdA"
                     /locus_tag="PXA71_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HDL5106374.1"
                     /translation="VTKRNGTREQLNLDKIHRVITWAAEGLENVSVSQVELRSHIQFY
                     EGIRTSDIHETIIKAAADLITKDTPDYQYLAARLAIFHLRKKAYGQFEPPHLYEHVKK
                     LVALGKYDADLLSDYTPEEWETMNGFIDHWRDMTFSYAAVKQLEGKYLVQNRVSGEIY
                     ESAQFLYLLVAACLFSKYPTASRLDYIRRFYDATSTFKISLPTPIMAGVRTPTRQFSS
                     CVLIECDDSLDSINATSAAIVKYVSQRAGIGINAGAIRALGSPIRGGEAFHTGCIPFY
                     KHFQTAVKSCSQGGVRGGAATVYFPIWHLEAESLMVLKNNRGVEENRARHMDYGVQIN
                     KMMYQRLIKGGEISLFSPSDVPGLYEAFFADQAKFEQLYLQYEQDPSIRQRKVKAVEL
                     FSLLMQERASTGRIYIQNVDHCNTHSPFNPRVAPIRQSNLCLEIALPTKPLAHFYDEQ
                     GEIALCTLSAFNLGTLSNLDELEELADLVVRALDALLDYQDYPVLAARNSSLNRRALG
                     VGVINYAYYLAKNQVRYSDGSANNLTHRTFEAIQYYLLKASMNLAKEQGACAYFDQTT
                     YAKGLLPIDTYKKEIDELTQEPLHYDWEQLRQDILQFGLRNSTLTALMPSETSSQISN
                     ATNGIEPPRGYISVKASKDGILKQVVPEYERLKAYYELLWDIPNMDGYLHLVGIMQKF
                     VDQAISANTNYDPNRFAEAKVPMKVLLKDLLTAYKYGLKTLYYQNTRDGAEDVQDDLD
                     EGCAGGACKI"
BASE COUNT         1522 a         1038 c          916 g         1452 t
ORIGIN      
        1 cttataccac tattatgcaa cgcatttcag gtgcaaaaca gatagattca ctcacggtta
       61 aaattaaaga tgatattgaa agccaaactg ccgaaaaaag cattgccgaa ttgttagtag
      121 ctaaacacgg caaaaaagat ttctttatta tgaatagtga tacgatcaaa caaaccatta
      181 ccagtaccac caatacaatg actttgctga tctcctctat cgcccttatt tcgctgattg
      241 tcggtggtat cggggtaatg aatattatgc tcgtttccgt caccgaacgc acccgagaaa
      301 ttggtgtccg aatggcgatt ggcgcaaaac aacgcaatat tttgcaacaa tttttaattg
      361 aggcggtggt tatttgccta ataggtggtg tgattggcat tttactggca agcgctatta
      421 tttgggcatt taatacctta ggtacgaatt ttaaaatgat gctttcaccg gaatcggtga
      481 ttattgccgt gctctgctct acacttatcg gtgtggtatt tggctacatt ccggcaagaa
      541 acgccgccca attaaaccca attactgctc tggcacaaga gtaaatgcga taactatctg
      601 ctacactgta ggggcaaaaa attttttgcc cctacatcca ttattatgcc aagtttaagg
      661 agataaaatg acaataacca atactgaact agaacaaatt ctgaacacca aactcaacag
      721 ctccgccatt aacgactatg ccccaaatgg cttgcaagtt gaagggaaaa gagagatcaa
      781 aaaaattatt accggtgtga cagctacact tcccctgatt gaaaaagcga ttgagaaaaa
      841 cgccgatgca attttagtcc accacggtta tttttggaaa agtgaaaacc cgtgcattcg
      901 aggaatgaaa ggtaaacgca ttaaacagct tttagtgaat gacatcaatc tctttggtta
      961 tcacctacca ctggatattc actccgaact aggtaacaac gcccagcttg ctaagcattt
     1021 aggagtaaaa aatctacaag gtttagaaga cagacctaat tcaattccaa tgtacggtga
     1081 attagaaaat ccgatttccg ccaatgaact gaaacaaaaa cttgaaaaaa cgttacaacg
     1141 caccgttatt ttatgtgatg aatttgttca tagcccacaa aaaatgatta aaacaatagg
     1201 gatttgctcc ggcggaggac aaggctatat tgatttagcc tttgaaaaag gctgtgatgc
     1261 ctttattagt ggcgaaattt ccgaacagac cactcactct gcccgtgaac aaggaatcta
     1321 ttattttgct tgcggtcatc acgccacgga acgagatggc gtaaaagcct taggtgaatg
     1381 gttagccgtt gaatatggtt tagatgttga atttattgat attgataacc ctgcataaaa
     1441 aatacaagcg gttgaatttc ctgaaaattt tgcaatttgc aaaaaatcac taaaaatcaa
     1501 ccgcttgtat atcatagtct aaagttcaaa atcgccaaaa tcacggctat ctactttagc
     1561 atcaatctgg ccaaccaaat aagaactgac ttccacttct tgtggtgcta cctgtacatt
     1621 atcggaaacc aaccacgcat tgatccacgg aatggggttg gaacgtgcct taaatggtaa
     1681 tggtagtcca acagcctgca tccgaatatt agtgatatat tcaatatatt gcaccaaaat
     1741 atcccgattt agccctatca tcgaaccgtc tttaaacagg tattccgccc acgctttttc
     1801 ttgttcagct gcacttaaaa aaagctcgta ggcctcttgg cgacattcac gtgcaatttc
     1861 tgccatttca ggatcatcat tgccataggc cataatattc aatatatgct gagtgccggt
     1921 aagatgtaat gcttcatcac gtgcaataaa tttgatgatt ttggcatttc cttccataag
     1981 ctgccgttcc gcaaaggcaa atgagcaagc aaaagagaca taaaaacgaa ttgcttcaag
     2041 cgcattcaca ctcatcatac agagataaag ttgtcttttt agactacgca aactgacctc
     2101 acaggttttt ccatcaacct gataactgcc ttcaccatac aaactataga gttggctgtc
     2161 acgaatcaaa tcatcataat aggcggaaat atctttggca cgcttaataa tttcttcgtt
     2221 tgtgacaata tcatcaaata ctattgatgg atcattgaca atattacgga tgatatgtgt
     2281 gtaagaacga ctgtgaattg tttcgctaaa tgtccaagtt tcaatccagg tttcaagctc
     2341 ggggatagac actaatggca aaagcgccac attcgggcta cgcccttgaa tggaatccaa
     2401 caaggtttgg tattttaaat tgctgataaa aatgtgcttt tcatgttcag gcagttgggc
     2461 atagtcaatg cggtcttgtg acacatccac ttcttccggt cgccagaaaa atgagagttg
     2521 tttttcaatc agtttttcaa aaatttcgta tttttgttga tcataacgcg ccacattcac
     2581 attttgtcca aaaaacatgg gttcttttag ttgatcattt ttatgttgtg aaaacgtagt
     2641 atatgccatg ttattctcct ttatttctgt tcttattaaa ttttacaagc accaccagca
     2701 cagccttcat ctaagtcgtc ttgcacatct tctgctccat cacgggtatt ttgatagtaa
     2761 agggttttta acccgtattt atacgccgtt aatagatctt ttaataatac tttcatcggt
     2821 actttagctt ctgcaaagcg gtttgggtcg taatttgtat tcgccgaaat cgcttggtca
     2881 acaaatttct gcataatccc aaccaaatgc aaatatccgt ccatattagg aatatcccaa
     2941 agcagttcat agtatgcttt taaacgttca tactccggca caacctgctt taaaataccg
     3001 tcttttgatg ctttaacact aatatagcca cgcggaggtt caattccatt ggtggcattc
     3061 gaaatttgcg acgaagtctc cgatggcatt aaggcagtta aagtggaatt gcgcaagcca
     3121 aattgcagaa tatcctgacg tagttgttcc caatcataat gaagcggttc ttgagttaat
     3181 tcatcaattt cttttttata agtatcgata gggagtaacc ctttggcata agtggtttga
     3241 tcaaaataag cacacgcccc ttgttctttg gctaaattca tcgatgcttt taataaataa
     3301 tactgaatcg cttcaaaggt acggtgagtt aaattattag cactgccatc ggaataacgc
     3361 acttggtttt tagctaaata gtaagcatag ttaatcacgc ctacacctaa tgcgcgacga
     3421 tttaatgagc tgttacgtgc agctaatacc ggataatctt gataatctaa tagggcatct
     3481 agcgcacgaa ccactaaatc agccaattct tctaactcat ctaaattgct gagtgtgcct
     3541 aaattaaatg ccgataatgt acataatgcg atttcccctt gttcatcata aaaatgtgcc
     3601 agtggcttag ttggcaaagc aatttctaag cagaggttcg attggcgtat cggtgcgaca
     3661 cgaggattaa atgggctatg agtattacaa tgatcgacat tctgaatata aattcgccct
     3721 gttgaagccc gctcttgcat cagtaatgaa aacaattcta cagctttaac tttacgttgc
     3781 cgaatgctcg gatcttgctc atattgcaaa taaagttgct caaatttagc ttgatcagca
     3841 aaaaacgctt catataaccc cggcacatct gatggactaa ataaactaat ctcaccgcct
     3901 ttaattaaac gttgatacat cattttatta atctgtaccc cgtaatccat atggcgagca
     3961 cggttttctt ccacaccacg gttatttttt aataccatta agctttctgc ttccaaatgc
     4021 caaatcggaa aatacacggt agccgctcca ccgcgaacac caccttgaga gcaagacttt
     4081 actgcagttt gaaaatgttt ataaaaggga atacagccgg tatgaaatgc ttctccacca
     4141 cgaatggggc tacctaatgc ccgaattgcg ccggcattaa taccgatccc agcacgctgt
     4201 gaaacatatt taacgattgc agccgaggtt gcattgatgg aatctaagct atcatcacac
     4261 tcaattaaca cacaggaact aaattgacga gtaggtgtac gcactcctgc cataatcggt
     4321 gttggcaaag aaattttgaa agtggaagtc gcatcataaa aacggcgaat ataatctaag
     4381 cggcttgctg ttggatactt agaaaataaa caggcagcta cgagtaaata caaaaattga
     4441 gccgattcat aaatctctcc gctaacacga ttctgcacta aatattttcc ttccaactgc
     4501 tttactgctg cataggaaaa cgtcatatcc cgccagtgat caataaatcc attcattgtc
     4561 tcccattctt cgggcgtata gtcgctcagc aagtctgcat catatttacc tagcgcaact
     4621 aattttttaa cgtgctcata taaatgcggt ggctcaaatt gtccataagc ttttttgcgt
     4681 aagtggaaaa tcgccaagcg tgcggctaaa tattgataat ctggcgtatc cttagtgatt
     4741 agatcagctg cagccttgat aatagtttca tgaatatctg aagtgcgaat accttcataa
     4801 aattgaatgt gagaacggag ttctacttgt gaaacagaaa cattctctaa cccttctgcc
     4861 gcccaagtaa tcacacgatg aattttatct agattgagtt gctcgcgcgt gccattacgc
     4921 tttgttac
//
LOCUS       DANLRW010000141         4914 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.142, whole genome shotgun sequence.
ACCESSION   DANLRW010000141 DANLRW010000000
VERSION     DANLRW010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4914
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.142"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(130..205)
                     /locus_tag="PXA71_002311"
     tRNA            complement(130..205)
                     /locus_tag="PXA71_002311"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(170..172),aa:Ile,seq:cat)
     gene            complement(299..1036)
                     /gene="pgeF"
                     /locus_tag="PXA71_002312"
     CDS             complement(299..1036)
                     /gene="pgeF"
                     /locus_tag="PXA71_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HDL5106375.1"
                     /translation="MDKIIPNWNVPKHIHALTTLRTGGVSKPPFDSFNLGDHVNDEPQ
                     DIAQNRALLVEKFQLPQAPLFLTQTHSTRVIELPYSGDNIKADAIYTNQPNQVCLVMT
                     ADCLPVLFASQDGSEIAAAHAGWRGLCDGILEATVEKFNCPPHEISAWLGPAIGPNAF
                     QVGSEVADQFCAFDPRAKEALIEDSTTSGKFLGNLYQIATQRLNKLGITAISGGEYCT
                     YSQPELFFSYRRDKQTGRMATLIWRTE"
     gene            complement(1068..1454)
                     /locus_tag="PXA71_002313"
     CDS             complement(1068..1454)
                     /locus_tag="PXA71_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDL5106376.1"
                     /translation="MTVIHTENAPAAIGPYVQAVDLGNMVLTSGQIPVNPETGEIPSD
                     IVQQTRQSLNNVKAIIEQAGLTVADIVKTTVFVKDLNDFAKVNAEYQAFFQENEHPNF
                     PARSCVEVARLPKDVGIEIEAIAVRR"
     gene            1535..2536
                     /gene="yejK"
                     /locus_tag="PXA71_002314"
     CDS             1535..2536
                     /gene="yejK"
                     /locus_tag="PXA71_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005623453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HDL5106377.1"
                     /translation="MSINVSEIVLHQLQKTEGENPELNTFLRENLLAISPEVDQMMLQ
                     LHQAYQSKAKAYGIFKPESVFAQQLNRLLEQETDFLPFSHSCAKMLAAELIKYPFADG
                     GTFILCRYTFLATEYLFIALIDSRNSMLVDEQLEIKRTQYLEIAQYDIACRINLTELK
                     LDATSNRYLTFVKGRVGRKIADFFMDFLSAEEGFNPQLQNQTLLQAVSDYCEQGELSA
                     PQTREVKKQVFEYCKGQINSGEEIALNELSNALPTLNEIDFAQFTQEQEYGLEENIPP
                     MRNALKTLTKFSGSGKGVTISFNAELLGERLIWDELNDTLTIKGLPANLRDQLERNK"
     gene            2603..2944
                     /gene="bamE"
                     /locus_tag="PXA71_002315"
     CDS             2603..2944
                     /gene="bamE"
                     /locus_tag="PXA71_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HDL5106378.1"
                     /translation="MKMKSLLAAMLLALGVTACSTVEKVVYRIDVPQGNYLEQDKIAQ
                     LKVGMTAEQVEYLLGTPMLKNIFETHRWDYVFIKREGYKDPEQRNLFIYFDAKGLVSK
                     IDDSNANAEQK"
     gene            3137..4477
                     /gene="gdhA"
                     /locus_tag="PXA71_002316"
     CDS             3137..4477
                     /gene="gdhA"
                     /locus_tag="PXA71_002316"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HDL5106379.1"
                     /translation="MSDLNALFQKIKQRDPNQAPFHQAVEEVFGSLAPFLAKNPKYTQ
                     QGLLGRIVEPERVISFRVTWVDDKGQVQVNRGYRVQMNSAIGPYKGGIRFHPTVDLGV
                     LKFLAFEQVFKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQAFMSELYRHIGADTD
                     VPAGDIGVGGREIGYMFGQYKKLRNEFTSVLTGKSLTWGGSLIRPEATGYGAVYFAES
                     MLATKGQQIEGKSVVISGSGNVAQYAAEKVIQKGGKVLTVSDSNGYVLFPESGMTEAQ
                     LQALLELKNERRERLSVYATEQGLKYFDGQKPWGVKCDIALPCATQNELDTEDAKELV
                     KNGCICVAEGANMPTTLGGVEVFIGAKILYAPGKAANAGGVATSGLEMSQNAIRLSWS
                     REEVDQRLFNIMKAIHENCVENGTEADGFVNYVNGANIAGFKKVANAMLEQGIV"
     gene            4639..>4914
                     /locus_tag="PXA71_002317"
     CDS             4639..>4914
                     /locus_tag="PXA71_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDL5106380.1"
                     /translation="MIITMKDIAKEANVSLGTVSNVLNGKSNVSLAKIEKVQAAVEKL
                     GYRKNIQASTLKSGTSNKIAIILPNITELKYACLYENLDLICTQNDLS"
BASE COUNT         1509 a          878 c         1081 g         1446 t
ORIGIN      
        1 atcattttag ggatcataaa cactaagata caatgcaact aaagaagaca ataagagact
       61 ataaaagaat ctaagttctt gattttatag taaatttgag acaatgaaag acaatatgca
      121 acgcttagat ggtcccccca gccggacttg aaccagcgac caagcgatta tgagtcgcct
      181 gctctaacca ctgagctatg gggggatttg aaaagtggtt ggaattatag agaaaaaccg
      241 agtagtcgtc tagaggcaga agattactcg gttaattatt gaacgagaga aaatagggtt
      301 attctgttcg ccaaattaag gttgccattc gcccggtttg tttgtctcgg cggtaggaaa
      361 aaaacagttc tggttggctg taggtgcaat attcaccgcc tgaaatggcg gtaatgccta
      421 atttattcag acgttgggtg gcaatttggt aaagatttcc taaaaattta ccgcttgtag
      481 tgctgtcttc aataagggct tctttcgctc ttgggtcaaa agcacagaat tggtctgcca
      541 cttcactccc gacttgaaaa gcattcggtc cgatagccgg ccctagccaa gctgatattt
      601 cgtgtggcgg gcagttgaat ttctctaccg tcgcctctaa tatgccatcg cataacccac
      661 gccagccggc gtgtgccgcc gcaatttccg acccgtcttg gctggcaaat aataccggca
      721 aacaatctgc agtcatcact aagcagactt ggtttggttg attggtgtaa atcgcatcgg
      781 ctttaatatt atcacctgaa tagggaagtt caatcactcg ggtgctgtga gtttgggtta
      841 aaaacagcgg agcttgtggt aattgaaatt tctcaaccaa taaagcacga ttttgagcga
      901 tatcttgtgg ctcgtcatta acgtgatcac ctaagttgaa actgtcaaaa ggcggtttgc
      961 ttactccgcc tgttcttaag gtcgtcagtg cgtgaatatg tttaggcaca ttccaatttg
     1021 gaataatttt atccatttgc aaaaaatctc aagaaaatga ccgcttgtta tcggcgtact
     1081 gcaatcgctt cgatctcaat gccaacatct tttggtaaac gagccacttc tacgcaagaa
     1141 cgagccggaa aattagggtg ttcgttttct tggaagaagg cttggtattc cgcatttacc
     1201 tttgcgaagt cgttaagatc tttgacaaat acggtggtct ttacaatatc ggcaacggtt
     1261 aagccggctt gttcgataat ggctttcacg ttgttcagag attggcgggt ttgttgcaca
     1321 atatcactcg ggatttcgcc ggtttcagga ttcacgggaa tttgcccaga agttaaaacc
     1381 atattgccta aatcaactgc ttgcacataa ggcccaatcg ctgccggtgc attttctgtg
     1441 tggataactg tcatcttgtg ttcctcttaa tgaaaaataa acggattaat gataatatct
     1501 tttcttatta tttggaataa agagaagtga attaatgagc attaatgttt ctgaaatcgt
     1561 gttacatcaa ttacaaaaaa cagagggcga gaacccggag cttaatacgt ttttgcgaga
     1621 aaatttattg gcaatttccc ctgaagtcga tcaaatgatg ttgcaattac atcaagccta
     1681 tcaaagtaaa gcaaaggctt acggtatatt taaaccggag tcggttttcg ctcaacagct
     1741 caaccgcttg ttggagcaag aaaccgattt tttacctttt agccatagct gtgccaaaat
     1801 gcttgcagca gagctgatta aatatccgtt tgccgatggt ggcactttta ttttgtgtcg
     1861 ttacactttt ttagctaccg aatatttgtt tattgcgttg attgatagcc gtaattcaat
     1921 gctggttgat gagcagttag agattaaacg cacgcaatat ctcgaaattg cacaatatga
     1981 tattgcctgc cgcattaatt taactgaact gaaacttgac gcaacgtcaa atcgctattt
     2041 aacttttgtg aaaggcagag tagggcgtaa aattgccgat ttctttatgg attttttaag
     2101 tgcggaagaa gggtttaatc cacaattgca aaatcaaacc ttgttgcaag cggtgagcga
     2161 ttattgtgag caaggggagt tatctgcccc tcaaactcga gaagtgaaaa agcaggtgtt
     2221 tgaatattgt aaagggcaga taaatagtgg agaggaaatt gcgttaaatg agctttccaa
     2281 cgcattgcca acactgaatg aaatcgattt tgcccaattt acgcaagagc aagaatacgg
     2341 cttggaagag aatattccgc ctatgcgaaa tgcccttaaa accctgacga aattttccgg
     2401 ttcgggcaaa ggagtaacga ttagctttaa cgcagaatta ttaggagagc gtttaatttg
     2461 ggatgaacta aacgacacac tgacaatcaa aggattaccg gcaaatctgc gtgaccagct
     2521 ggaacgtaac aaataatgga aaatttttat cagtttaggt attatctcgt tatctgaatt
     2581 ttggattatc aaaaggtcaa ttatgaaaat gaaatctctt ttagctgcaa tgttgcttgc
     2641 actgggtgta acggcttgtt caaccgttga gaaagtggtg taccgtattg atgtaccgca
     2701 aggcaattac ttagaacaag ataaaattgc tcaacttaaa gtcggtatga cagcggaaca
     2761 agttgaatat ttgcttggta caccaatgtt aaagaacatt tttgaaaccc accgttggga
     2821 ttatgtgttt attaaacgtg aaggttataa agatcctgaa caacgcaatc tgtttattta
     2881 ttttgatgct aaagggttag tatcaaaaat tgatgacagc aatgcgaatg cagaacaaaa
     2941 ataggacgat ttgttggttc gaaaagccca cttttaaaag tgggcttatt tttttgaata
     3001 aaaaataagc atttaaactt aatttttctt attttaatga taaatttttc taatctatct
     3061 tttcaaagct aaaattgctt gctagacttc gctcatctta aatacacaac atcatcaatt
     3121 tattcaggag tataatatga gcgatttaaa cgcccttttc caaaaaatca aacaacgtga
     3181 tccgaaccaa gcccctttcc atcaagcggt tgaagaagtg ttcggtagcc ttgccccttt
     3241 cttagctaaa aatccgaaat atacccagca aggtttatta gggcgtattg ttgagcctga
     3301 gcgtgtaatt agcttccgtg tcacttgggt tgatgataaa ggtcaagtgc aagtaaaccg
     3361 tggttaccgt gtacaaatga actcagcaat cggtccatac aaaggcggta ttcgtttcca
     3421 cccaaccgtt gatttaggcg tattaaaatt cttagccttt gagcaagtat tcaaaaatgc
     3481 gttaacgaca ttgccaatgg gcggtggtaa aggtggttca gactttgacc cgaaaggcaa
     3541 atctgatgcc gaagtaatgc gtttctgcca agcgtttatg agcgaattat atcgccacat
     3601 tggtgctgat actgacgttc ctgcaggcga tatcggcgtg ggaggtcgtg aaatcggcta
     3661 tatgttcggt caatacaaaa aattacgcaa tgaatttact tcagtattaa ccggtaaatc
     3721 gctgacttgg ggtggtagct taattcgtcc ggaagcaact ggttatggtg cggtgtattt
     3781 tgcagagtct atgttagcga ctaaaggtca gcagatcgaa ggaaaatcag tggtaatttc
     3841 cggttcgggt aacgtggcac aatatgcagc tgaaaaagtg attcaaaaag gcggtaaagt
     3901 attaacggtt tcagattcta acggttatgt cttattccct gaatccggta tgacagaggc
     3961 acaattacaa gcattattag agttgaaaaa cgaacgccgt gaacgcttat ctgtgtatgc
     4021 aacagaacaa ggcttaaaat actttgacgg tcaaaaaccg tggggtgtga aatgtgacat
     4081 cgctttacct tgtgcaaccc aaaacgaatt agataccgaa gatgctaaag aattagtgaa
     4141 aaacggctgt atttgtgtgg cagaaggtgc aaatatgcca accacattag gtggtgttga
     4201 agtctttatc ggtgcgaaaa tcctttatgc tccgggtaaa gcggctaacg caggtggtgt
     4261 ggcaacctca ggtttagaaa tgagccaaaa tgcaattcgt ctatcttgga gtcgtgaaga
     4321 agtagatcag cgtttattca acattatgaa agcaattcac gaaaactgcg tagaaaatgg
     4381 tactgaagca gatggtttcg taaactatgt aaacggtgcg aatattgctg gtttcaaaaa
     4441 agtggcaaat gcgatgttag aacagggtat tgtttaattt attatcccta ttattcaaga
     4501 actgcctcga tatatcgagg cagttttttt attttaggtt gtagctagag acaagctaaa
     4561 ttgaaatcgt atttcatttg ccaattatgg taaaatctat gccaatctca gttttagcag
     4621 tatgtgaaag ggcagtatat gatcattacg atgaaagata tcgcaaagga agcaaatgtt
     4681 tcgttaggaa cagtatcgaa tgtattaaac ggaaaaagta atgttagctt agctaaaata
     4741 gaaaaagtac aagctgccgt tgaaaagttg ggttatcgta aaaatattca agcctctacg
     4801 ttaaaaagtg gcacaagtaa taaaattgct attatattgc ccaatattac agagctgaaa
     4861 tatgcctgtt tatatgaaaa tcttgattta atttgtacgc aaaatgattt atct
//
LOCUS       DANLRW010000142         4883 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.143, whole genome shotgun sequence.
ACCESSION   DANLRW010000142 DANLRW010000000
VERSION     DANLRW010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4883
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.143"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            109..867
                     /locus_tag="PXA71_002318"
     CDS             109..867
                     /locus_tag="PXA71_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03761 family integrating conjugative element
                     protein"
                     /protein_id="HDL5106381.1"
                     /translation="MTTPLDLQLGPLRSEITFTLHTQYAHKLWMGRPMIRNEEGKVTQ
                     SSIISVPNCFAMLTQIQRAASEDDPYADDYLIQFEESVINYRKEIQKLTNDIVTLYAK
                     MLPEGISIERCANISPISYPIYVNSQLGYQLLYLLGDFDSLCRSVMTAAHIAIINRAE
                     AQDWIEAGARLIRKCFGIVERYKNSGITRRDYQENNARYQAAVKRMGYTLSDAVLTGE
                     HRAEFAPFIKQNGIVEEEQPVETHITTQANESQE"
     gene            876..1385
                     /locus_tag="PXA71_002319"
     CDS             876..1385
                     /locus_tag="PXA71_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3158 family protein"
                     /protein_id="HDL5106382.1"
                     /translation="MNLISDEIYRQLVKDSGLNASLKQLFSHFDTVSDYAVLQEQIQQ
                     ARAYFMNAQDGMVQYVRSEFSPLAVYMIKDKASSSGGTFLRWRSMQNARTGGTVWQPI
                     VDDESVPVDVRQKVVAVEKDRILINMQISVFNHILRQLVDCTEKLKEVDNAVAKSGLY
                     PLKNPVCNP"
     gene            1491..1691
                     /locus_tag="PXA71_002320"
     CDS             1491..1691
                     /locus_tag="PXA71_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106383.1"
                     /translation="MANVKMKFSVEIDGEVIIQHEIEEQAEKRSYFSQERKLAKEIIN
                     KMNEFYSDRWIDAKPWIASDDK"
     gene            complement(1807..2010)
                     /locus_tag="PXA71_002321"
     CDS             complement(1807..2010)
                     /locus_tag="PXA71_002321"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106384.1"
                     /translation="MELRKFPHHIIFIEQAKYGLQNYLLFELLTRTGQAVYFKHPIFH
                     TPNKEMRIVFVQDHKFLSLWQNK"
     gene            2119..2637
                     /locus_tag="PXA71_002322"
     CDS             2119..2637
                     /locus_tag="PXA71_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemophilus-specific protein"
                     /protein_id="HDL5106385.1"
                     /translation="MRYIKYSLLLISTMIMSGCAELSAINDKVGDWAGQMNQTLYGSK
                     ESSVEQHNGRQVYIKTRNGKYVYQDSGTLQLKQNIDEVFLKVRREFGFRPTNADSDAR
                     KVYHTVQGTFYHVSGYFKSDVDNDGVDLGENYLEVIIEKGSKGTVNVEWKATGSTRWL
                     DSTKQRLLNTLK"
     gene            2798..4849
                     /locus_tag="PXA71_002323"
     CDS             2798..4849
                     /locus_tag="PXA71_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDL5106386.1"
                     /translation="MKLFICEKPSQARDLASVLGATSKGDGLLATNDKSIIVTWGFGH
                     LVEQYQPEDYDEVWKRWAFETLPIIPAQWKMAPKKESKKQYNVVIGLIKKASLVVIAT
                     DADREGEMIARELLDLAGYRGQIQRCWLSALDDASIRKALQTLKSGKETEALYYAGMG
                     RSRSDWLIGMNFSRLFTLMAQAKGYSGKPLSVGRVQSPTLALVVNRDREIANFVPKAH
                     YSLAVQLATASDETFVAGLSIPEQYLDESGLCLDSRVIQQAEAQIKQVGIAKVITVET
                     KREKKAPPLLYALSDLQGECNRLFGFGAQQVLDIAQSLYEEHKITTYPRTDCGYLPES
                     QLTEVPMVIRSLVAADSELQTLLPRLNLQQKSRAWDDKKITAHHGIIPTIKKADLSKL
                     SEEEMKVYDLIRRRYLAQFLPHLETDKTIATLQSSGHTLIARGNVIVSQGWRILFGKN
                     ADEDVGSDDEKQGLPALTANQQCRVTHSEVRTLQTKPPAHYTEGTLLEAMKNAARFVT
                     DPRLKQRLRETEGLGTEATRAGLIQGLIDKGFLIKKKKSLMASAEAIALIDSLPDLLK
                     NPGLTALWEQALNQIAEGSMTLDDFMQRQETFVRQLIGNCMQQGMSLGNIEIRKCPEC
                     GKPMRKINHAKGTFWGCTGYPDCQHKEADKKVKSTSNKSTKKNSSLNVLDQLNKLRSQ
                     L"
BASE COUNT         1582 a          915 c         1012 g         1374 t
ORIGIN      
        1 tgattaaaaa ataaacagag tagacagtgt ctacaaaggt taaaaaaata gacaatggaa
       61 agcccctttc caaaggctaa aaaacaatca aataaacaag gagcatatat gaccacacca
      121 ttagacttac aattaggtcc acttcgtagt gagatcacgt ttacgctaca tacccaatat
      181 gcccataaat tatggatggg gagaccaatg attcgtaatg aggaaggcaa agtaactcaa
      241 tcctccatta tcagcgtacc aaattgcttt gcaatgctaa cccaaattca acgggctgca
      301 tcagaagatg atccttatgc tgatgattac cttattcaat tcgaggaaag tgtgatcaat
      361 tatcggaagg aaattcaaaa actcaccaac gatattgtca cgctctacgc caaaatgttg
      421 ccggagggaa tttctattga acgctgtgcc aatatttccc cgatttctta cccgatttat
      481 gttaattcac agttaggcta tcagttgctt tacttacttg gtgattttga cagtctttgt
      541 cgctcagtaa tgacagctgc tcatattgcc attatcaatc gtgcagaagc tcaagattgg
      601 attgaagcag gtgcaagatt aattcgtaaa tgttttggga ttgttgaacg ttataaaaat
      661 tccggtatta ctcgccgaga ctaccaagaa aataatgctc gctatcaagc tgctgtaaaa
      721 cgaatgggct atacattgtc agatgctgta cttaccggtg agcatcgtgc tgaatttgct
      781 cctttcatca agcaaaacgg cattgttgaa gaagaacaac ccgtagaaac ccatatcacg
      841 acacaagcaa atgaatctca agaataagga gtgatatgaa cctcatttct gatgaaattt
      901 atcggcaatt agtcaaagac tccgggttaa atgcatctct gaaacagcta tttagccatt
      961 ttgatactgt ctcagactat gctgtattgc aggagcaaat acagcaagca cgggcttatt
     1021 ttatgaatgc acaggatggt atggttcagt atgttcgtag cgaattctct ccccttgcgg
     1081 tctatatgat taaagataag gcttcttctt ccggtggtac gtttttacgc tggcgcagta
     1141 tgcagaatgc cagaaccggt ggcacagttt ggcaaccgat tgtagatgat gaatcagtcc
     1201 cggtcgatgt gagacaaaaa gttgtcgcag tggaaaaaga cagaattttg atcaatatgc
     1261 agatttccgt gtttaaccat attttgcgac agttggttga ttgtactgaa aaactaaaag
     1321 aagtggataa tgcggttgca aaatcaggtt tgtatcccct gaaaaatcca gtttgtaatc
     1381 cctgaaaaag taaggtttgt aaagcctgca ttaaaaggcc ttttaaaggt aaggggacaa
     1441 gcccccttac ctttcacgaa gaaaatgcct ttattatttc ggagtaaaca atggcaaatg
     1501 taaaaatgaa attcagtgtt gaaatagatg gtgaagttat cattcaacat gagattgaag
     1561 agcaagccga aaaacgctct tacttttcgc aagagcgtaa attggccaaa gagattataa
     1621 ataaaatgaa tgaattttat tctgacagat ggattgatgc aaaaccttgg attgcttctg
     1681 acgataaata aaagcaatga gcatcatcga ttacaggttt cataaattga tttcgctaag
     1741 gtatttaact taatagcaat aaaatcttcc tgagtgtagg acgatttatc ccattcttta
     1801 ataaggttat ttgttttgcc atagggataa aaatttatga tcttgaacaa agacaattct
     1861 catctctttg ttaggggtat ggaatatcgg atgcttaaag taaaccgctt gtcctgttct
     1921 tgttaatagt tcaaagagta agtaattctg taatccgtat ttagcttgct caataaagat
     1981 aatgtggtga ggaaattttc ttaattccat aatagtccct agcattttct ctcttactac
     2041 ctaaaagaat tttaagtaga ttttaaccgc acttttgcaa aaaatgaatg cagataaccc
     2101 gcttgtaagg agaattccat gcgttacatc aaatatagct tacttctcat ttctactatg
     2161 attatgtcag gttgtgccga actttctgca attaatgata aggttggaga ttgggcagga
     2221 cagatgaacc agactctcta tggttctaaa gaaagctcag ttgaacagca taatgggcga
     2281 caggtttata ttaaaactcg aaatggcaag tatgtctatc aagattccgg cacattacag
     2341 ttgaaacaga atattgatga agtcttccta aaagttcgcc gagaatttgg cttccgtcca
     2401 accaatgcag atagcgatgc acgtaaggtt tatcatacgg tacaaggtac cttttaccac
     2461 gtttccggtt atttcaaatc tgatgtagat aacgacggcg tggatttagg tgaaaactac
     2521 ttagaggtta tcattgaaaa aggcagtaaa ggcacggtga atgttgaatg gaaagccaca
     2581 ggtagtacaa gatggctaga tagtaccaaa caacgtttac ttaatacatt aaaataagaa
     2641 ctcatatcgc tcctagaacc tcttcccagt ggaaacactg ggattttttt atcgttctca
     2701 tctctcaatt tattgcattc tacaagataa taagtcgttg aatgctattt aatcagcaca
     2761 ttactattgc ctatccgtat tgattttgga aaatagtatg aaactgttta tttgtgaaaa
     2821 gccctctcaa gcccgagatc ttgcaagtgt attaggtgct acatcgaaag gggatggact
     2881 attggcaact aatgataagt ctattattgt aacttgggga tttggtcatc ttgttgagca
     2941 ataccaaccc gaggattatg atgaagtttg gaaacgctgg gcatttgaaa cattgccgat
     3001 cattcctgct caatggaaaa tggctcctaa aaaagagtcc aagaaacaat acaatgtagt
     3061 catcggatta attaagaaag cctctttggt tgtgattgca accgatgcag acagagaagg
     3121 tgaaatgatt gctcgtgaac tgttagattt agccggatac cgaggacaaa tacagcgttg
     3181 ctggctatca gctctcgatg atgccagtat ccgaaaagct ctccaaacac tcaaatcagg
     3241 taaagaaacc gaggcacttt actacgctgg tatgggacgt agccgctcgg actggctgat
     3301 tggaatgaac ttctcccgtc tatttacctt aatggcccaa gcaaaaggct attccggtaa
     3361 gccattaagc gttggtcgag tgcaaagccc aacactagct cttgtggtca atcgagacag
     3421 agagattgca aatttcgtgc ctaaagctca ttactcctta gcagttcaat tagcaacagc
     3481 gtctgatgaa acctttgttg ccgggctttc aatacctgaa cagtatttag atgaatcagg
     3541 gctttgcctt gatagtcggg tcatacaaca agctgaagct caaattaaac aagtaggcat
     3601 agccaaagtg ataacggttg aaaccaaacg agagaaaaag gcaccgccgt tgctttatgc
     3661 attaagtgat ttacaagggg aatgtaaccg cttgtttggt tttggggctc aacaagtact
     3721 tgatattgct caatcacttt atgaggagca taaaattact acttatcccc gtaccgattg
     3781 cggctatcta cctgaatctc agcttactga agtaccgatg gtaattcgtt cattagtcgc
     3841 cgctgattca gagttacaaa ctctattgcc tcgattaaat ctacaacaaa aaagtcgggc
     3901 ttgggatgat aaaaaaatta ctgctcacca cggtattatc cccactatca aaaaagcaga
     3961 tttaagcaag ttaagtgagg aggagatgaa ggtctatgat ctcattcgcc gtcgctatct
     4021 cgctcaattc ttaccgcact tagaaacaga taaaactata gccaccttgc agtcctctgg
     4081 acacactctg attgctagag gaaatgtgat cgtttctcaa ggttggcgta tcctgtttgg
     4141 taaaaatgca gatgaagatg ttggtagtga tgatgagaaa caaggcttac ctgcattgac
     4201 ggcaaatcag caatgccgtg ttacacattc agaagtccgg acattacaaa ccaaaccacc
     4261 ggcacactat actgaaggaa cactactcga agcaatgaaa aatgcagctc gctttgtgac
     4321 tgatccaaga cttaaacaac ggttgcgtga aacggaggga ttgggtacag aggcaactcg
     4381 tgccggattg attcaagggc tcattgacaa aggtttttta attaagaaga aaaaatccct
     4441 aatggcttct gctgaagcga ttgcccttat tgatagccta ccggatttat taaaaaatcc
     4501 cggtttaacg gctctttggg aacaggcact taatcaaatt gctgaaggca gtatgaccct
     4561 tgatgacttt atgcaacgac aagaaacctt tgtacgacaa cttatcggaa attgtatgca
     4621 acaaggtatg tcattgggta atattgaaat tcgaaaatgc ccggagtgtg gtaagccaat
     4681 gcggaaaatc aatcacgcta aaggtacatt ctggggttgt acaggatatc cggattgcca
     4741 acataaagaa gcagataaaa aagtcaaatc gacttcaaat aaatctacca agaaaaatag
     4801 tagcttaaat gtgctagatc agctgaataa attaagaagc cagttataaa tctaagcaga
     4861 ttatggtatt atcaaagtgc aaa
//
LOCUS       DANLRW010000143         4855 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.144, whole genome shotgun sequence.
ACCESSION   DANLRW010000143 DANLRW010000000
VERSION     DANLRW010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4855
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.144"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(219..560)
                     /locus_tag="PXA71_002324"
     CDS             complement(219..560)
                     /locus_tag="PXA71_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease domain-containing protein"
                     /protein_id="HDL5106387.1"
                     /translation="MKAILCQRAKQLRTNMTEAEKVLWQALRAKRFLAIKFKRQQVIG
                     NYIVDFVCFSAKLVIELDGSQHLDQQNYDNLRTHFLNGQGFRVLRFWNNQIHSDLEAV
                     LDTIFYEITRG"
     gene            complement(708..1340)
                     /locus_tag="PXA71_002325"
     CDS             complement(708..1340)
                     /locus_tag="PXA71_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2625 family protein"
                     /protein_id="HDL5106388.1"
                     /translation="MKNLEQLLDKQSAWLILRDWFTQAKNHYEILASYPEDAGSALVG
                     MQLSTRSPLGAMVYETGGVFIDHGWLRILGSGNEKLPRGLFDWNFGKTFKQSGEQPSH
                     LLVADDAIGGYFAINAGGIGSDLGKVYYYHPKAKKWENTQLGYSEFLGWALAGDLNHF
                     YQDLRWENWQTDVEKLQGHQVLDLTSKIAVPIERHYQGEFAPENMGYSVA"
     gene            complement(1394..1915)
                     /gene="hscB"
                     /locus_tag="PXA71_002326"
     CDS             complement(1394..1915)
                     /gene="hscB"
                     /locus_tag="PXA71_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly co-chaperone HscB"
                     /protein_id="HDL5106389.1"
                     /translation="MNNPFTLFDLPVQFQLDNAQLSERYLALQKQLHPDNFAHKSSAE
                     QLEAVQKSADVNEALNILKDPILRAEAMIEIHTGEAKNLEEKSMRDVDFLMQQLEWHE
                     KLETIEHRKDETELTVFLKQIKAEQKAVLEQLEQTLNTADWQKANALTDKLRYFKKLI
                     IQIEKVEEKFFDY"
     gene            complement(1925..2248)
                     /gene="iscA"
                     /locus_tag="PXA71_002327"
     CDS             complement(1925..2248)
                     /gene="iscA"
                     /locus_tag="PXA71_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012340699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HDL5106390.1"
                     /translation="MSITLTEAAANRVRTFLENRGKGIGLRLGVKTSGCSGLAYVLEF
                     VDVLNEDDQVFEQHGVKVIVDEKSLTYLNGTQLDFVKEGLNEGFKYTNPNVKNECGCG
                     ESFSV"
     gene            complement(2357..2740)
                     /gene="iscU"
                     /locus_tag="PXA71_002328"
     CDS             complement(2357..2740)
                     /gene="iscU"
                     /locus_tag="PXA71_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HDL5106391.1"
                     /translation="MAYSEKVIDHYENPRNVGTFDKEASDTGTGMVGAPACGDILRLQ
                     IKVNDQGIIEDARFKAYGCGSAIASSSLITEWVKGKSLEEAGAIKNSDIAEELELPPV
                     KVHCSILAEDAIKAAIADYKEKQAK"
     gene            complement(2867..4087)
                     /locus_tag="PXA71_002329"
     CDS             complement(2867..4087)
                     /locus_tag="PXA71_002329"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017459011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IscS subfamily cysteine desulfurase"
                     /protein_id="HDL5106392.1"
                     /translation="MKLPIYLDYAATTPMDERVAKKMMEYMTKDGIFGNPASRSHKFG
                     WEAEEAVDVARNQIADLIGADSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITVKT
                     EHKAVLDTCRQLEREGFEVTYLDPEEDGILDLAKLKAAIRPDTILVSVMHVNNEMGVI
                     QPIKEIGAICRAKKIIFHVDATQSVGKIEVNVQDLNVDLMSFSSHKLYGPKGIGGLYV
                     CRKPRVRLEAIIHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMARLTVLRDR
                     LYNGFKDIEEVYVNGSMEEGKRIGSNLNISFNFVEGESLMMSLRDIAVSSGSACTSAS
                     LEPSYVLRAIGRDDELAHSSIRFTLGRWTTEEEIDHTIEIVKKAIVKLRELSPLWEMF
                     KEGVDLSKIEWNHH"
     gene            complement(4142..4594)
                     /gene="iscR"
                     /locus_tag="PXA71_002330"
     CDS             complement(4142..4594)
                     /gene="iscR"
                     /locus_tag="PXA71_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HDL5106393.1"
                     /translation="MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQ
                     LFAQLRRDGIVQSVRGPGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGSGNCRKDS
                     QCLTHSLWERLEDQIEQFLGTISVADLAAEHADHDCEKEHCHDHPHHH"
BASE COUNT         1417 a         1032 c          832 g         1574 t
ORIGIN      
        1 ttttcttctg aacgaagaaa aatctatccc tctcccacaa ggggagaggg ttattctttc
       61 aaaaattcaa aacaactaaa aaattagcat tctccttttg taggagaaaa tgttgttctt
      121 tcaaaattct aaaataaccg caaaattaac tctcgcccct tgtgggagag agacagataa
      181 atcattcgtt cagaatgatt tatcagagag agggggaatt accctctcgt aatttcataa
      241 aaaattgtat ctaaaacagc ctctagatcg ctatgaattt gattattcca aaatcttaaa
      301 accctgaacc cctgaccgtt taaaaaatga gttcgtagat tatcatagtt ttgttgatct
      361 aaatgttgtg aaccatctaa ttcaataact aatttcgctg aaaagcaaac aaaatcgaca
      421 atatagttac ctataacttg ttgccgttta aattttatcg ctaaaaatcg ttttgctctt
      481 aatgcttgcc aaagaacctt ctctgcttct gtcatattag tccgaagctg tttagctctt
      541 tggcataaaa ttgctttcat tttttattcc tcttttttaa tttagtataa aaggaataaa
      601 aaatataatt tgagcgattt ttgtgatcta aatcgaaaat cagaaaattt ctttcgttct
      661 aaaaaaataa gctaaacagc ctatatttca gcctctctta caaacactta agccaccgaa
      721 tatcccatat tttcaggggc aaattcgcct tggtagtggc gttcaatcgg aacggcgatt
      781 ttacttgtaa gatccagcac ttgatgccct tgtaatttct ctacatcggt ttgccagttt
      841 tcccaacgca aatcctgata aaaatggttt aaatctccgg ctaatgccca gcctagaaat
      901 tctgaataac ctaattgggt gttttcccat tttttagctt ttggatgata ataataaact
      961 ttgccaagat ctgagccgat tccgccggca ttaatggcaa aatagccacc gattgcatca
     1021 tccgctacca gcaagtggct tggttgttcg ccagattgtt taaaagtttt gccaaagttc
     1081 caatcaaata agcctcgagg caatttttcg ttgcctgagc ctaaaatgcg taaccaaccg
     1141 tggtcaataa atacgccacc ggtttcatac accattgccc ctagcggtga gcgagtagaa
     1201 agttgcatac caaccaatgc actgccggca tcttcagggt aactcgctaa aatttcgtaa
     1261 tgatttttgg cttgggtaaa ccagtctctt aaaattaacc aagccgattg tttatctaat
     1321 aattgttcta aatttttcat ttgcaaaatt tccttagaat ttgaccgctt gcgaaaacca
     1381 tacaaatgta ggattaatag tcaaagaatt tttcttctac tttctcaatc tgaataatta
     1441 attttttaaa gtaacggagc ttgtcggtta acgcattggc tttttgccag tcggctgtat
     1501 ttaacgtttg ttcaagctgt tctaatactg ctttttgttc cgctttaatc tgttttaaaa
     1561 agacggtcag ttcggtttcg tctttacgat gctcaatggt ttccagtttt tcgtgccatt
     1621 cgagttgctg cattaagaaa tccacatctc gcatactttt ttcttcgaga tttttggctt
     1681 cacctgtatg gatttcaatc atcgcttctg cccgtaaaat cggatcttta agaatattga
     1741 gtgcctcatt gacatcagca gatttttgca ccgcttctaa ctgttcagca cttgatttgt
     1801 gggcaaagtt atctgggtga agctgtttct gtaaagcaag ataacgctca gaaagctggg
     1861 cgttatcaag ttgaaattga acgggtaaat caaataaagt aaaagggtta ttcattacag
     1921 ttccttacac actaaaactt tcgccacagc cgcattcgtt tttaacattc gggttggtgt
     1981 atttaaagcc ttcgtttaag ccttctttca caaaatccag ctgcgtaccg tttaagtaag
     2041 tcaggctttt ttcatcgaca ataactttta cgccgtgttg ttcgaaaacc tgatcgtctt
     2101 catttaatac atcaacaaat tcaagcacat aggcaagccc cgaacaaccg gaagttttca
     2161 caccaagcct tagcccgata cctttacctc tgttttctaa gaatgtacga actcggtttg
     2221 cggcagcttc tgttaaggta atgctcatag ttttccttat gtgaatggat taaatcaaga
     2281 tagaaatagc aaatgcaagc ggttaaattt tgcaaatttt ttgcaaaaat cgaccgcttg
     2341 cattgattgt atcatattac ttagcttgtt tctctttgta gtctgcaatt gcagctttga
     2401 ttgcatcttc tgctaagatt gaacagtgaa cttttaccgg tggtaattct aactcttcag
     2461 cgatatcact gtttttaatc gcacctgctt cctctaatga tttacctttt acccattcgg
     2521 taatgagaga acttgatgcg attgcagaac cacaaccgta tgctttaaag cgtgcatctt
     2581 caatgatacc ttgatcgttc actttaattt gtaaacgtaa aatatcacca caagccggtg
     2641 ctcccaccat acctgtaccg gtgtctgatg cttctttatc aaaagtccct acgttgcgtg
     2701 ggttttcgta atgatcaatt actttttcgc tatatgccat ttttgtattc cttttatttc
     2761 ctatttccgg cgaaacctat ttcgccccta cattcaattt actatttgtg atgaaagctt
     2821 attttgtagg ggcaaatatt atttgccctt gcaaaatttt tctgaattag tggtgattcc
     2881 attcgatttt agacaaatct acaccttctt tgaacatttc ccaaagaggc gaaagctcac
     2941 gcaatttcac gatagctttt ttcacgattt caatagtatg atcgatttct tcttcagtcg
     3001 tccaacgacc taaagtgaaa cggattgagc tgtgagctaa ttcatcgtca cgaccgattg
     3061 cacgtaacac ataagatggc tctaaacttg cagaagtaca agctgaacct gatgatactg
     3121 cgatatcacg taatgacatc attaacgatt cgccctcaac aaagttaaag ctgatgttta
     3181 ggtttgaacc gatacgtttg ccttcttcca ttgaaccgtt tacatatact tcttcaatat
     3241 ctttaaagcc gttatataaa cgatcacgta acacggttaa acgagccatt tccgttgcca
     3301 tttcttcttt agcgatacga tatgcttcac ccatacctac aatttggtga acaggcaatg
     3361 tacccgaacg cataccacgc tcgtgaccgc caccgtgaat aattgcttct aaacgcacac
     3421 gtggtttacg acaaacatat agaccgccga taccttttgg tccgtataat ttgtggcttg
     3481 agaaagacat taaatcaaca tttaagtctt gtacattcac ttcgatttta ccaacagact
     3541 gggtcgcatc aacgtggaaa atgattttct tcgcacggca gattgcaccg atctctttaa
     3601 tcggttggat tacgcccatt tcgttattta cgtgcattac cgaaactaaa attgtgtccg
     3661 gacgaatagc cgcttttaat ttagctaaat ctaaaatacc gtcttcttca gggtctaagt
     3721 aagtcacttc aaaaccttca cgctctaact gacggcaagt atctaatact gctttatgtt
     3781 cggttttaac agtgataatg tgtttacctt tggtttgata gaaatgagcc gcacctttga
     3841 tggctaagtt atccgactct gttgcaccag aagtgaaaac gatttcacgg ctgtctgcac
     3901 cgattaaatc ggcaatttgg ttacgagcca catcaaccgc ttcttccgct tcccaaccaa
     3961 atttgtgtga gcgagaagca gggttaccaa agataccgtc tttggtcata tattccatca
     4021 tttttttcgc aacacgttcg tccattggtg tggttgctgc gtaatccaaa taaattggta
     4081 atttcattgt tactcctagt taaaacaacc caagcggtca tttttgataa aaaatttgca
     4141 attagtgatg atgaggatga tcgtgacaat gctctttttc acaatcgtga tcagcgtgtt
     4201 ctgcggctaa atccgcaact gaaattgtcc ctaaaaactg ctcaatttga tcttctaacc
     4261 gctcccacaa agaatgcgtt aaacactgag aatctttacg gcaattacca ctacctttac
     4321 atttggtgac atcaatattt tcattcacgg cggagatgat catacccacg ctaatctctt
     4381 ccggtttttt acctaattga tacccaccac ccggtccacg aacgctctgc acgataccgt
     4441 cacggcgaag ttgagcaaac agttgctcta aataagacag tgaaatcgct tggcgatctg
     4501 aaatatcggc taagctaacc ggctctagtt ttccgtgtaa agcaatatct aaaatggcgg
     4561 ttactgcata acgccctttt gaggtaagct tcataaaata tcctcattga ttatccagaa
     4621 aatcttctga aacagttgct aaattttgat ataccccacc aatttagtca atcatttagg
     4681 actaattagt gtaaaaggtt ttatatatta aaacagatta aaacaataac gctgattata
     4741 cgaaaaaaga gccgaaaata ccaaaatacc aaagataaac agttcataga ccgcacaatt
     4801 tcactcttat ttgctcctaa ctgatcggaa cagttgaaat ttaattgata gagag
//
LOCUS       DANLRW010000144         4851 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.145, whole genome shotgun sequence.
ACCESSION   DANLRW010000144 DANLRW010000000
VERSION     DANLRW010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4851
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.145"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(331..2001)
                     /gene="glnS"
                     /locus_tag="PXA71_002331"
     CDS             complement(331..2001)
                     /gene="glnS"
                     /locus_tag="PXA71_002331"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HDL5106394.1"
                     /translation="MSEEILTAETGTRANFITHIIDEDLASGKHNNVYTRFPPEPNGY
                     LHIGHAKSICLNFGIAQDYNGLCNLRFDDTNPVKEDVEYVDSIKQDVEWLGFKWEGEP
                     RYASDYFDQLYGYAIELINKGLAYVDELSPDEMREYRGTLTEPGKNSPYRDRSVEENL
                     ALFEKMKNGEFAEGKACLRAKIDMASPFIVMRDPVLYRVKFAHHHQTGDKWCIYPMYD
                     FTHCISDAIERITHSLCTLEFQDNRRLYDWVLDNISIERPLPHQYEFSRLNLEGTLTS
                     KRKLLKLVTDGIVDGWNDPRMPTISGLRRRGYTPASLREFCRRIGVTKQDNVVEYSAL
                     EACIREDLNENAPRAMAVINPVRVVIENFGEKEILKAPNHPNRPELGERDLPFTREIY
                     IDEADFREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDASGRISTIFCTYDPDTLGK
                     NPADGRKVKGVIHWVSAEDNKPAEFRIYDRLFTVPNPGAEEDINAVLNPESLVVKHGF
                     VESSLAHAKPEQDYQFEREGYYCLDSKDGSADNLVFNLTVSLKESVAF"
     gene            complement(2162..2605)
                     /locus_tag="PXA71_002332"
     CDS             complement(2162..2605)
                     /locus_tag="PXA71_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HDL5106395.1"
                     /translation="MNLQQIQDRLALKDLVDTFSNLADEKKVAEQMPLFTQDAVVNTY
                     IGGKLVFEMHGVAEIEQVFTTFLTPFHSVYHLNGQHTVPFIDENNATAINYCAVKLVE
                     TKEGKEILHDHSVRYADTYVKQEGKWRIAKRIANFMISESREIRQ"
     gene            complement(2656..3231)
                     /locus_tag="PXA71_002333"
     CDS             complement(2656..3231)
                     /locus_tag="PXA71_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HDL5106396.1"
                     /translation="MKQILILGASGSLANVVIPELLKDNNVQLTLFARRPQSVAKFET
                     ERVKIVQGDVLDFHALTQAMQGVDAVYAGLAGDLKAMAGNVVNAMNEAQVKRLVWISS
                     MGIYGETGEDHGAILEPYRQSAAVIEASELDYTVVRPGWFTNGSEVQYQLTHKGEPFK
                     GHSVSRKSIADFVARILRENSEIRESVGIAA"
     gene            3338..4228
                     /locus_tag="PXA71_002334"
     CDS             3338..4228
                     /locus_tag="PXA71_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDL5106397.1"
                     /translation="MKENLNDLRAFLLVAQTSSFTKAAAQMGVSQSALSHSIRGIEER
                     LQIKLFHRTTRSISTTEAGERLYQRLLPLFDEIDQEVNGLSEFRNALKGGLRINGNEH
                     VFRDVLADKFAEFVKRYPEVALELVAEDRFVDIVAERFDAGIRLGADVAKDMIALRIS
                     PDVKMTAAASPNYLAQHGTPKTPFDLTEHHCLKHRLATLGGILAWEFRDPITKKIVKF
                     QPQGNLTANNGFLLQHYAKQGLGILWSPQDSIQTELDNGSLVPILTDWAMQYEGYHLY
                     YPNRRQNSPLLKALIDVLRG"
     gene            complement(4295..4816)
                     /gene="efp"
                     /locus_tag="PXA71_002335"
     CDS             complement(4295..4816)
                     /gene="efp"
                     /locus_tag="PXA71_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDL5106398.1"
                     /translation="MQDGEPCVIVENEFVKPGKGQAFTRTKIRKLISGKVLEINFKSG
                     TSVEAADVVDSNYNYSYSDGDFWYFMHPETFEQISVDEKALGDNVKWLVDNAECIVTL
                     WNGSAIAVTPPNFVELEIVETDPGLKGDTAGTGGKPATLSTGAVVNVPLFVQIGEVIR
                     VDTRSGEYVSRVK"
BASE COUNT         1322 a         1065 c         1024 g         1440 t
ORIGIN      
        1 tcacttttgg tttccaaaga ttatagaaag ctcaaataat acactacctc ataatttaaa
       61 atgaaacgtt tcaattggaa aaagtggatt ttgtgactga gatcacaaat ttaaacattg
      121 gtctgtattt ttgagagatt ttgtttgaaa ctgccggcaa attcgcttaa ccttaaggta
      181 acaagaataa gtgttgtacc tagcaaccta acacataaat ttgctttccg agtggcccca
      241 agaattgggg ctttttttat gcttgatgag tcgttttgag agtaaaaaaa taccagcata
      301 tttgctggta tttgaatgaa gagagttaga ttagaacgct acgctttctt ttaagctgac
      361 agttaagtta aatacaaggt tgtctgccga accatctttg ctgtctaagc agtagtaacc
      421 ttcacgctcg aattggtagt cttgttccgg tttggcgtga gctaaacttg actcaacaaa
      481 accatgctta accactaatg attcaggatt tagcaccgca ttgatgtctt cttccgcccc
      541 cgggtttggt actgtaaata ggcggtcgta aatgcggaac tctgccggtt tgttatcttc
      601 agcagatacc caatgaatca cgccttttac tttgcgacca tcagccggat ttttgcccaa
      661 tgtatccggg tcgtatgtgc aaaaaatagt tgaaattcga ccgcttgcat ctttttccac
      721 acgctcagct ttaatcacat aggcattgcg taaacgaact tctttgccta agactaaacg
      781 tttatattgc ttattggctt cttcacggaa gtcggcttca tcaatataaa tctcacgggt
      841 gaacggtaaa tcacgctcgc caagctctgg acgatttggg tgattagggg cttttaatat
      901 ttccttttca ccgaagtttt caatcaccac tcgaaccggg ttaatcaccg ccatcgcgcg
      961 tggtgcgttt tcatttaagt cttcacgaat gcacgcttca agggcagagt attccaccac
     1021 gttatcttgc ttggttaccc caatacggcg acaaaattca cgtaaagacg ctggggtata
     1081 accacggcgg cgtaagccgg aaatggttgg catacgaggg tcattccaac catcaacaat
     1141 gccgtctgtg actaatttta ataatttacg cttagaggtt aaagtacctt ctaaatttaa
     1201 acgtgaaaat tcgtattggt gcggtaacgg tctttcaatc gaaatattgt ccagcaccca
     1261 atcatataag cggcggttat cttggaactc tagcgtacat agcgagtgag tgattcgctc
     1321 aatcgcatcg gaaatgcagt gggtaaaatc gtacatcggg tagatgcacc atttatcacc
     1381 ggtttgatga tggtgagcaa atttcacacg gtaaagcacc ggatctcgca tcacaataaa
     1441 cggggacgcc atatcaattt ttgctctcaa gcaggctttc ccttccgcaa actctccgtt
     1501 tttcattttt tcgaataacg ctaagttttc ttccacgcta cgatcacggt aagggctgtt
     1561 tttgcccggc tcggttaaag taccacggta ttcacgcatt tcatcaggcg ataattcatc
     1621 aacataggct aatcctttgt tgattaactc aatcgcatag ccataaagct ggtcaaaata
     1681 gtctgaggca taacgaggct caccctccca tttaaaacct agccactcca catcttgctt
     1741 aattgaatct acatattcca cgtcttcttt aaccgggttg gtatcatcaa aacgcaagtt
     1801 acataaaccg ttataatctt gagcgatacc aaaatttaaa cagatagatt tagcgtgtcc
     1861 gatatgcaaa taaccgtttg gttcaggtgg aaaacgagtg taaacattgt tgtgctttcc
     1921 gcttgctaaa tcttcatcaa taatatgggt aataaaattg gctcgagtgc cagtttctgc
     1981 cgttaaaatt tcttcgctca tagttctctc taaatgtatc aataaaaata acggattatt
     2041 ctacacttaa ttgaaacaga cttaaagact aaagcaaaat tcctcggttt cctccaaaga
     2101 attttgctgt tttagtaaga tgcaatggaa ttgcaaattt ttagctaaat ttaaccgctt
     2161 gttattgcct gatttcacgg ctttcgctga tcataaaatt cgcaatccgt ttggcaatcc
     2221 gccatttacc ctcttgttta acataggtat cggcataacg cacgctgtga tcgtgcaaga
     2281 tctctttgcc ctctttggtt tctaccagtt tcaccgcaca atagttgatc gctgtggcgt
     2341 tattttcatc aataaaaggc acggtatgct gaccgtttaa atgataaacg ctgtgaaacg
     2401 gggttaaaaa ggtggtaaac acctgttcga tttctgccac gccgtgcatt tcaaacacca
     2461 attttccgcc gatgtaggtg tttacgacgg catcttgcgt gaaaagcggc atctgctcgg
     2521 caaccttttt ttcatcggca aggttagaga atgtatctac taaatctttt agtgctaaac
     2581 gatcttggat ttgttgtaag ttcattgtgt tttccttctg atttttgcaa attttctttg
     2641 gtttttcacc gcttgttagg ctgcaatacc aacactttca cggatttcgc tgttttcacg
     2701 caaaatgcga gccacaaaat cggcaatgga tttgcgggaa acgctgtgtc ctttgaacgg
     2761 ttcgcctttg tgagtcagct gatattgcac ttccgaaccg ttggtaaacc agcccgggcg
     2821 gacaacggta taatccaact cgctggcttc aatcacggct gccgattggc ggtaaggctc
     2881 taaaattgcc ccgtgatctt cgccggtttc gccataaatc cccattgagc taatccaaac
     2941 caagcgtttt acctgagctt cattcattgc gttcaccaca tttcccgcca tcgcttttaa
     3001 gtcgccggca agtccagcgt aaacggcatc aacgccttgc attgcttggg ttaatgcgtg
     3061 gaaatccaac acatcgcctt gcacaatttt gacgcgttca gtttcaaatt tcgctactga
     3121 ttgcggacga cgggcaaaaa gggttaattg cacattattg tcttttagca gttcaggaat
     3181 cacgacattc gctaggctac cgcttgctcc taaaattaag atctgtttca ttgctgttct
     3241 ccattgaatg aagtcagtat agcggtgtag attgcatttg attagtaggg taaaatcgct
     3301 tgaagtaatg agaaaaattc attaataagg tggttaaatg aaagaaaacc tcaacgattt
     3361 aagagctttt ttgttggtag cacaaacgag cagttttacc aaagcagcag cacagatggg
     3421 cgtgtcgcag tcggcgttgt cgcacagcat tcgggggatt gaagaacggt tgcaaatcaa
     3481 gctgtttcat cgcaccactc gtagcatttc aaccaccgag gcaggggaga ggctgtatca
     3541 acggctgtta ccgctgtttg atgaaatcga ccaagaagta aatgggctga gtgagtttcg
     3601 caatgcgtta aaaggcgggc tgagaattaa cggtaatgaa cacgttttcc gtgatgtgct
     3661 ggcagataaa ttcgctgagt ttgtcaaacg ttaccctgaa gtagcattgg agctagtggc
     3721 ggaagatcgc tttgtagata ttgtcgccga gcgttttgat gccggtattc ggcttggggc
     3781 agatgtggcg aaagatatga ttgcactacg catttcgccc gatgtgaaaa tgaccgcagc
     3841 tgccagcccc aactatttgg cacagcacgg cacgccgaaa acgccctttg atttaaccga
     3901 acatcattgt ctcaaacatc gtcttgcgac attgggcggc attctggcgt gggaatttcg
     3961 ggatcccatc accaagaaaa tcgttaaatt tcaaccgcag ggcaatctta ctgccaataa
     4021 cggcttcttg ctgcaacact atgccaaaca aggtttaggc attctttgga gtccgcaaga
     4081 cagcattcaa accgagctgg ataacggcag cctcgtgccg attttaaccg actgggcaat
     4141 gcagtatgag ggctatcatc tctattaccc caaccgtcgc caaaattcgc ctttgctgaa
     4201 agcgttaatt gatgtgctga gaggataggt aaaaatgagc ggtcgttttt agcaaaaaat
     4261 tgaccaaaaa acgaccactt gtagagaagc taaattattt cacacgagaa acatattcgc
     4321 ctgaacgggt atccacacgg ataacttcac cgatttgaac gaataaaggc acgtttacca
     4381 cagcaccggt gcttaatgtt gccggtttac cgcctgtacc tgcagtatcg ccttttaagc
     4441 ccgggtcggt ttcgacgatt tctaactcaa cgaagtttgg tggtgtgact gcaattgctg
     4501 aaccgttcca taaagtcacg atacattctg cattatcaac taaccatttt acgttgtcgc
     4561 ctaacgcttt ttcatctacc gagatttgtt caaaggtttc agggtgcata aagtaccaga
     4621 aatcaccatc gctgtaagag tagttgtagt tagaatctac tacatctgct gcttcaaccg
     4681 aagtgcctga tttgaagttg atctctaata ctttgccaga gattaattta cggattttag
     4741 tacgggtaaa tgcttgacct ttacccggtt ttacgaattc gttttcaaca attacacaag
     4801 gttcgccatc ttgaataaat tttaaacctt ttttaaagtc gttagtgctg t
//
LOCUS       DANLRW010000145         4771 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.146, whole genome shotgun sequence.
ACCESSION   DANLRW010000145 DANLRW010000000
VERSION     DANLRW010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4771
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.146"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..543)
                     /locus_tag="PXA71_002336"
     CDS             complement(<1..543)
                     /locus_tag="PXA71_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106399.1"
                     /translation="MEGLIMGLQLIPHFPELAISRRTYLHDMPMYCFVSKNWIFSAKD
                     RAKREALGNLLACGGEMMKSFIFKRSLFSEIWFEDILLEDEEKELIRILYNKPEPEYQ
                     VEEKIDWEAREARRKQADYDKWQSYDERNPFHYQIFPTDTIAYAQQQVEKFIEDVDNF
                     LEWFYDDEVKRYILERNEIYQ"
     gene            complement(1076..1402)
                     /locus_tag="PXA71_002337"
     CDS             complement(1076..1402)
                     /locus_tag="PXA71_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5106400.1"
                     /translation="MLHSKGKILPKITLNEIETKERFAIALRKEMHAQYWTGKMVANA
                     LDVSEKTVKDWVAGKRLPSSLDLLALMRISSCVRQLVWDISKSEECYQDAEMLKQICF
                     VLLSNL"
     gene            1450..3081
                     /locus_tag="PXA71_002338"
     CDS             1450..3081
                     /locus_tag="PXA71_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDL5106401.1"
                     /translation="MVTRTKNQPKNQAVSYIRMSTEHQEFSPDLQRCFIENYAKENGL
                     EIIREYIDEGKSGLTAEHRPQFLSMIQLVQSGQADFDHILVYDVSRWGRFMNIDESGH
                     YELICTYQGIKVHYCAEPFKGNDIASQIYKTMKRLSVGDYCRELGVKVFNGQKNLIQH
                     GFRQGGVAGFGLRRRLIDCQGNPKFDLQRGDRKSLQTDRVILVAGPKEEQEIVRQIYH
                     DFVYQHKTEQQIADSLNAQGIVTDRNTAWTKGVVHQILINEKYVGHNVWNKRSASKTR
                     EYKGKNPVEEWVRAENVFEAIVPQALFNAAQTIIHQRSARLSDDEMLEQLKLLLKEKG
                     KLSGLIIDEAENCPSSSAYSSRFGSLLNTYTLINYEPERDYHYVEINRLLRQQHKNFV
                     QQTLDTIIELGGVVLSDDVTDLVHINNEFTASIVLSRCRLTPSGSKRWLIRFDTSLNP
                     DITIAVRINESATEILDYYLLPTTEKVNEKLRLAESNPAELEIYRHDNLDRFFIMVER
                     ILVKEFIYAKRHHSNSSYRQNSGTQSQNAQSESLC"
     gene            2996..3889
                     /locus_tag="PXA71_002339"
     CDS             2996..3889
                     /locus_tag="PXA71_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5106402.1"
                     /translation="MQNDTIQILPIDKIRVLNPRTRNQKVFADLVENIATIGLKRPIT
                     VTPSVDSAEYYDLLCGQGRLEACQVLGELFIPCRVVNANSEESYLISLVENIARRQHS
                     YMELLSGIKILNDRGYKPVDIARKIGFSKSHVNSILHLINAGEERLINAVEQGILPIT
                     IAISISRSDDQEVQKQLAELYTNGTLKSTDIAKIRNLIHRRNLAGKKANTGISGSIRS
                     SIYNPKTVVNIYKEETERQKMMIKQADYDEKQLSIILSCLNKLFEDKYFQLVLKSEHL
                     DDMPKDLSQRMLKQREGNIYA"
     gene            3882..4745
                     /locus_tag="PXA71_002340"
     CDS             3882..4745
                     /locus_tag="PXA71_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HDL5106403.1"
                     /translation="MPKHITYAFHNQLISLPIDEIIPLKKMDKNFEKSTKFQSILASI
                     REIGIVEPVVVYPEENNQYILLDGHSRVHALKKLGVDKVLCMISTDDEGFTYNKQINR
                     LTAVQENKMLMKTIERGVSDELIARTLNINLKALRQKMNMLNGITREVVDILANKQVS
                     KEIFRILRKMKPERQIEVAQMMIASNKFTLTYANMMLLSSRKEELVESHKSKTTNDDL
                     TDLSIMQKELERLKENYKISEEKLADLKMGLVVAKGYVKKLLNNAAVVDLLENDQSEI
                     YLTLKEVCDIQ"
BASE COUNT         1567 a          917 c          929 g         1358 t
ORIGIN      
        1 ttggtaaatc tcattccttt ctaatatata gcgttttacc tcatcatcgt aaaaccattc
       61 aagaaagtta tcaacatctt caatgaactt ttctacctgt tgctgtgcat atgctatcgt
      121 atcggtaggg aagatttgat aatgaaacgg attgcgttca tcataactct gccatttgtc
      181 ataatcggct tgtttacgcc gcgcttctct tgcctcccag tcgatttttt cttccacttg
      241 atattctggc tctggcttat tatacaaaat acggatgagt tccttttctt catcctcaag
      301 cagaatatct tcaaaccaga tttcagaaaa taggctgcgc ttgaaaatga aagacttcat
      361 catttcccct ccacacgcca ataagtttcc caatgcttcc cgtttcgctc tatcttttgc
      421 cgaaaatatc cagtttttcg atacaaaaca gtacattggc atgtcatgca aataggttct
      481 tcgtgaaatg gctaattcag gaaaatgagg aataagctgt aaccccatta ttaagccttc
      541 catactgcac acgatcttac ttaattgtcc gtaatcgcgt aaaaaagcaa tgtcagtttt
      601 tatcaaccac aacgataggc tgactaatat gaacataaag atgagataat agatcggttt
      661 taaggctaag gcgcgccgac aaagccacat taagagtgga atcgtaacga gatcaaagaa
      721 aaatgatgag tctatgatga tttccttatg tgagttgatg aataatcagg catgaaggaa
      781 accttaaaaa ggaaaagtcc cttcattacc actttttaaa accttttaag gcttaaaaat
      841 caaaagtcgt aatgaaggga ctattgtccg tgggcaaaaa ggtattagtt atagggggct
      901 ttgtcaagcg aaaatttact gtgcattttc tcgccaaaac tgatttaagc cttgataaaa
      961 tctcgaaagt accttgtcaa gaaaaatctt tttagtggtt tgattgctag ttttttgagc
     1021 aaaactatgc tgtaatgcag taaaaataca gtttctatct gtgtttggaa tccagttaca
     1081 aattggagag taatacaaag catatttgct tgagcatctc agcatcttgg tagcattctt
     1141 ctgattttga aatatcccaa acaagctgcc gtacacatga tgaaattctc attaacgcca
     1201 ataaatctag gctacttggc aatcttttcc ctgcaaccca atctttaact gttttctcac
     1261 tcacatctaa tgcattggcg accattttcc ccgtccaata ttgagcatgc atttcctttc
     1321 gtaacgcaat tgcaaaccgc tctttcgttt caatctcatt gagtgtaatt ttgggtaaga
     1381 ttttaccctt tgagtgcaac atatttcctc ccgattcctt tatattggtg tagataagga
     1441 gtcattagaa tggttacacg tacaaagaat caacctaaaa atcaggcggt ttcctacatt
     1501 cgaatgtcaa cggaacacca agaattttca ccagaccttc aacgttgctt tatcgaaaat
     1561 tatgctaaag aaaatgggct agaaatcatt agagaataca ttgatgaagg aaaaagtggg
     1621 ctaaccgcag aacaccgccc acaattcctt tcaatgatac aactcgtaca aagtggacaa
     1681 gccgacttcg atcatatttt ggtgtatgac gtgagtcgtt ggggtcggtt tatgaatatt
     1741 gatgaatcgg ggcattatga actgatttgt acctaccaag gcattaaagt ccactattgc
     1801 gccgagccat tcaaagggaa tgatattgcc tctcaaatat ataaaaccat gaaacgtttg
     1861 tcggtaggag actactgtcg tgaactcgga gtgaaagtat ttaacggtca aaaaaatctg
     1921 atccaacatg gatttagaca aggtggggta gctggatttg gattgcgtag gagattgatt
     1981 gactgtcaag gaaaccctaa atttgatctc caacgtggag atagaaagag cctacaaacc
     2041 gacagagtga ttttggttgc aggcccaaag gaagagcagg aaattgtccg acaaatttac
     2101 catgattttg tttatcaaca taaaacggaa caacaaattg ctgatagctt aaatgcacaa
     2161 ggcattgtta ctgatagaaa tacagcatgg acgaaaggcg tagtacatca aatccttatt
     2221 aacgaaaagt atgtcggcca caatgtttgg aataaacgta gtgcatcaaa aacacgcgaa
     2281 tataaaggta aaaaccccgt agaagagtgg gtgcgagctg agaatgtatt tgaagctatc
     2341 gtgccacaag ccttatttaa tgcagcccaa accattattc atcaacgctc cgcccgatta
     2401 tctgacgatg aaatgttaga gcaactcaag ctacttttga aagagaaagg gaagctgtct
     2461 ggcttgatca ttgatgaagc cgaaaattgt ccatcaagta gcgcgtacag tagccgattt
     2521 ggaagcctac ttaacacata tactttaatt aactatgaac ccgaacggga ttaccactat
     2581 gtagagatca accgattact ccgtcagcag cataaaaatt tcgtacaaca aacacttgat
     2641 accattattg aattgggggg agtggttttg agcgatgatg taaccgattt agtccacatc
     2701 aataatgaat ttaccgcctc aatcgtatta agtcgttgtc gcctaacgcc atcaggaagc
     2761 aaaagatggt tgatccgatt tgataccagt ttaaatcccg acataacaat tgcagtgcgc
     2821 atcaatgaga gtgccacaga aattcttgat tactacctgc ttcccacaac tgaaaaggta
     2881 aatgaaaaac tacgattggc tgagagtaat cctgccgaac ttgaaatcta ccgccatgat
     2941 aatttagatc gcttttttat tatggttgaa cgtattttag tcaaggagtt tatctatgca
     3001 aaacgacacc attcaaattc ttcctatcga caaaattcgg gtactcaatc ccagaacgcg
     3061 caatcagaaa gtctttgctg atctggtcga aaacattgca acgattggtc tcaagagacc
     3121 tattaccgta acgccatctg tcgatagtgc tgaatattat gatttgttat gcggtcaagg
     3181 tcggcttgag gcttgtcagg tgcttggtga gctattcata ccttgtcgcg ttgtgaacgc
     3241 aaatagtgaa gaaagctact tgatcagcct tgtggaaaat attgccagac gtcagcattc
     3301 ctatatggag ctgctttcag gcatcaaaat actcaatgat agaggttata agcccgttga
     3361 tattgctcgc aaaatcggtt tctcaaaaag ccatgtcaac agtatcttac acctcatcaa
     3421 tgctggggaa gagcgcctta tcaatgcggt agagcaagga attttaccca ttaccatcgc
     3481 tatttcgatt tctcgttcag acgatcagga agttcaaaaa caactcgcgg aactttacac
     3541 caatggtaca ttgaaaagca ccgatattgc caaaatacgt aacctgatcc accgtagaaa
     3601 tcttgctggt aagaaagcca atacaggtat ttctggaagt attagatcat ctatttataa
     3661 tcccaaaact gtggtgaata tctacaaaga ggaaacggaa agacagaaaa tgatgatcaa
     3721 gcaagcggac tatgatgaaa aacaactctc tattatcttg tcttgcttaa ataaactctt
     3781 tgaggacaaa tactttcaac tcgtccttaa atcagaacat ttagacgata tgccaaaaga
     3841 tttaagccaa cgaatgttaa aacaacgaga gggaaatatt tatgcctaaa catattactt
     3901 atgcctttca taatcagtta atttcgcttc caattgatga gattattcca ttaaaaaaga
     3961 tggataaaaa ttttgagaaa agcactaagt tccaaagcat tctggcttca attcgtgaaa
     4021 tcgggattgt tgaacctgtg gtcgtctatc cagaagaaaa caaccaatat attttgttag
     4081 atggccattc tcgtgtacat gcactcaaaa agctaggtgt ggataaggtg ctttgtatga
     4141 tttctaccga tgatgaaggc tttacttaca acaagcaaat taaccgctta accgccgttc
     4201 aggaaaataa aatgctgatg aaaaccattg agcgcggggt ttcggatgaa ctgatcgcaa
     4261 gaacactcaa tatcaatcta aaagcactac ggcagaaaat gaatatgctt aatgggatca
     4321 caagagaggt tgttgatata ttggccaata agcaggtcag taaagagata tttcggattt
     4381 tgcgcaagat gaagcctgaa cgccaaattg aagtggcaca aatgatgatc gccagtaata
     4441 agtttacatt gacatacgcc aatatgatgt tgctcagttc acgcaaggag gaattagtcg
     4501 aaagccacaa gtctaaaacc acgaatgatg atttaaccga tctttccatt atgcaaaaag
     4561 agctagagcg acttaaagag aactataaaa tttccgaaga gaaattggcg gacttaaaaa
     4621 tgggattggt tgtggcgaaa gggtatgtca aaaaactatt gaataatgct gccgtggtag
     4681 atttgcttga aaatgatcag agtgaaatct atcttactct taaagaagta tgtgatattc
     4741 aataatataa tatctagcta ataaccttaa t
//
LOCUS       DANLRW010000146         4750 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.147, whole genome shotgun sequence.
ACCESSION   DANLRW010000146 DANLRW010000000
VERSION     DANLRW010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4750
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.147"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            137..2071
                     /gene="iolD"
                     /locus_tag="PXA71_002341"
     CDS             137..2071
                     /gene="iolD"
                     /locus_tag="PXA71_002341"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015433647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HDL5106404.1"
                     /translation="MQTTRLTVAQALVQFLDNQYLDVDGKEIKFVHGVAAIFGHGNVL
                     GIGQALAQNAGGLTLYQGRNEQGMAHLAMGFAKQNLRQRIIACTSSVGPGAANMVTAA
                     ATATANRIPLLLLPGDVFATRQPDPVLQQIEQPYDLSISTNDAFRAVSKYWDRVQRPE
                     QLMSACINAFRVLTDPAETGAVTIALPQDVQAESFDFPNSFLQKRVHRLERTPPTTAM
                     IKQAVTLIQTKKKPLIVCGGGVRYSQAGQILQKFAKQFGIPFAETQAGKSAVVSDHAL
                     NVGGVGETGCLAANRLAKEADLVIGIGTRYTDFTTSSKWIFQNPNVQFLNINVARFDA
                     YKLDGVQLVADAKTALEALSQAIPTDYQAQWENEISQAKADFADEIQRLRAVQYHPDF
                     TPEINDNLDHKAVHNEFIQLTGSQLTQTQVLGIVNETIDNNAIIVAAAGSLPGDLQRT
                     WLSKGEETYHLEYGYSCMGYEVSAAVGVKIARPEQEVYALLGDGSYLMAHTELVTSIQ
                     EGKKINVVLFDNMANGCINNLQIGNGMDSFGTEFRFRNGETNQLNGGLVPIDFAKNAE
                     AYGCKTYRVTNEAELRAALDDAKKQTVSTLIDIKVLPKTMAHGYGCWWHVGVAEVSES
                     ERIQQARQRSEEQLAKARKY"
     gene            2198..3094
                     /gene="iolE"
                     /locus_tag="PXA71_002342"
     CDS             2198..3094
                     /gene="iolE"
                     /locus_tag="PXA71_002342"
                     /EC_number="4.2.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011817366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="myo-inosose-2 dehydratase"
                     /protein_id="HDL5106405.1"
                     /translation="MKAENIQLGIAPIGWTNDDLPELGAENTFEQCVSEMALAGYTGC
                     EVGNKYPRDVAVLKHKLDVRGIQICNAWFSTFFVDGKREETIAEFIKHRDFLHAMGAK
                     VIGCSEQSRSIQGTTKSVFKEKPIFNDEDWKRMAEGYNELAKLAAEKGMKVCLHHHMG
                     TGIQTPEEVDRYMAEVNDDVYLLFDSGHLYYSEGCQKAMLGVLEKYIDRIIHVHLKDV
                     RDEVMAEVKAKDLSFLEGVKKGTFTVPGDGVIDFRPIFDILEKHDYKGWMVVEAEQDP
                     ALANPFEYALKGRKYIRETAGV"
     gene            3096..4106
                     /gene="iolG"
                     /locus_tag="PXA71_002343"
     CDS             3096..4106
                     /gene="iolG"
                     /locus_tag="PXA71_002343"
                     /EC_number="1.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005537901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol 2-dehydrogenase"
                     /protein_id="HDL5106406.1"
                     /translation="MLKVGIIGAGRIGRVHSESISKYVKGAEIKAISDVKITEELTAW
                     AKSMGIPEVYDDYKKILQDPEIDAVLVCSSTNTHAPISIEAAQAGKHVFCEKPVDADP
                     AKIREVLSAVEKAGVKFQVGFNRRFDHNFKAIKDRVAAGDIGEPHVIRVTSRDPEAPP
                     IEYVKVSGGMFFDMTIHDFDMIRYLSGSEVEEVFAVGTVLVNPEIGKAGDIDTAVITL
                     KLKNGAIGVIDNSRKAAYGYDQRAEVFGSKGAIHITNDTGSTAVFSGENGVVAEKPKY
                     FFLERYMQSFADEISCFVDSVVNDKPTLVNGNDGLQPVLIALAAKKSLEENRPVKLSE
                     VA"
     gene            complement(4485..>4750)
                     /locus_tag="PXA71_002344"
     CDS             complement(4485..>4750)
                     /locus_tag="PXA71_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106407.1"
                     /translation="EIYLTKTIDYIAAIFFFSVTFTALFTMMRLLHIFILSDLLDKIG
                     CNTYELPKIEDIHKYEMLSILKIQAAKENNAELRYYVKKKKKK"
BASE COUNT         1426 a          992 c         1099 g         1233 t
ORIGIN      
        1 aacttcgcag aaatgagaac tggatcacat ctttttttcg atttccttgc tattataaat
       61 gaaataaatt tttcatttgt aaaaatcagt agaaaaccga ccgcttgcaa aagcgatgta
      121 agccagagga ggctttatgc agactactcg tttaacggtt gcacaggcgt tagtgcaatt
      181 tttggataat caatatttag acgtggacgg caaagagatt aaattcgttc acggtgttgc
      241 cgctattttc ggccacggca atgtgctggg aataggtcag gcgcttgctc aaaatgccgg
      301 tggtttaacg ctctaccaag gcagaaatga gcaaggtatg gcacatttgg cgatgggctt
      361 tgctaagcaa aatctgcgtc aaagaattat tgcctgtact tcctcggtcg ggccgggggc
      421 ggcaaatatg gttacggctg cggcaacggc aacagcgaac cgtattcctc ttcttttatt
      481 accgggcgat gtgtttgcga cccgccagcc ggatccggta ctgcaacaaa tcgaacaacc
      541 ttacgattta agcattagca ctaacgatgc gttccgtgcc gtcagtaaat attgggatag
      601 agtgcaacgc cctgagcagt taatgagtgc ttgtatcaat gcgtttcgtg tgctgaccga
      661 ccctgctgaa accggtgctg tcaccattgc tctgccgcaa gatgtacaag cggagagttt
      721 tgatttcccg aacagcttcc tgcaaaaacg agtgcatcgc ttagagcgta caccgccgac
      781 aacagcgatg attaagcaag cggtaacatt aattcaaacc aagaaaaaac cgctgattgt
      841 ctgcggtggc ggtgttcgct actcgcaagc gggtcaaatt ctgcaaaaat ttgctaaaca
      901 gttcggcatt ccatttgctg aaacccaagc gggtaaaagt gcggtggtgt ccgatcacgc
      961 attgaatgta ggcggagtgg gagaaaccgg ttgtttagcg gcaaaccgtc tggcaaaaga
     1021 agcggattta gtgattggca ttggtacacg ctacaccgac ttcacgactt cttccaaatg
     1081 gattttccaa aacccaaacg tgcagttttt gaacattaat gtggcacgtt ttgatgcgta
     1141 caaattagac ggcgtgcaac tggttgccga tgcaaaaact gcattagagg cgttaagcca
     1201 agccattcct actgattatc aagctcaatg ggagaatgaa atttcacagg cgaaagcgga
     1261 ttttgctgat gaaattcaac gcctgcgcgc tgtgcaatat caccctgatt tcacccctga
     1321 aattaacgat aatcttgatc ataaagcggt tcacaatgaa tttattcagc tcaccggttc
     1381 ccagctcacc caaacccaag tgctgggtat tgtgaatgaa accattgata acaatgcgat
     1441 tattgttgcc gccgccggaa gtttgccggg tgatttacaa cgcacttggt taagtaaagg
     1501 tgaagagact taccaccttg aatatggcta ctcctgtatg ggctatgaag tgagtgcggc
     1561 agtcggcgtg aaaattgccc gccccgaaca agaggtctat gccttgctgg gggacggctc
     1621 ttacttaatg gcacacaccg aattagtgac ctcaattcaa gagggcaaaa aaatcaacgt
     1681 ggtgctgttc gacaatatgg caaacggctg tatcaacaac ctgcaaatcg gcaacggtat
     1741 ggacagtttc ggtacggaat tccgcttccg caatggcgaa actaaccaac tcaacggcgg
     1801 tttagtgccg attgattttg ccaaaaacgc cgaagcatac ggctgcaaaa cctatcgggt
     1861 aactaacgaa gccgaattgc gtgccgccct tgatgatgcg aaaaaacaga ccgtttctac
     1921 cttaatcgat attaaagtgt tgccgaaaac aatggctcac ggctatggct gctggtggca
     1981 cgttggtgtc gcggaagtgt cagagagcga gcgtattcaa caagcccgcc aacgctccga
     2041 agagcagtta gctaaggctc ggaagtatta gttaaaaaaa caactcccca ctttgagcta
     2101 cgaggggaga atatcaagcg gtcaaatttg caaaattttt gataaaaata accgcttgca
     2161 tccaaattta tctctataaa tcaaacgagg tttctctatg aaagctgaaa acattcaatt
     2221 aggcattgcc ccaatcggtt ggacgaacga tgacctgccg gaactgggag cggaaaacac
     2281 tttcgagcag tgtgtgagtg agatggcact tgccggctac acgggctgtg aagtgggtaa
     2341 taaatatccg cgtgatgttg ccgtgttaaa acacaaactg gacgtgcgtg gcattcaaat
     2401 ctgtaatgcg tggttcagca ccttctttgt ggacggtaaa cgggaagaga ccattgccga
     2461 gttcatcaaa catcgtgatt tcttgcatgc aatgggggca aaagtgatcg gctgttccga
     2521 acagagccgt agtattcaag gcacaaccaa atctgtgttc aaagaaaaac cgattttcaa
     2581 cgatgaagat tggaaacgta tggcagaagg ctataacgaa ttggcgaaac ttgccgccga
     2641 aaaaggaatg aaagtctgcc tgcatcacca tatgggaacc ggtattcaaa cacccgaaga
     2701 ggtcgatcgc tatatggcag aagtgaatga cgatgtctat ctgttgttcg attcagggca
     2761 tttgtactat tccgaaggct gccaaaaagc gatgctcggc gtactggaaa aatatatcga
     2821 ccgtattatc cacgttcact taaaagatgt gcgtgatgaa gtcatggcgg aagtaaaagc
     2881 aaaagattta agctttttag aaggcgtgaa aaaaggcacc tttactgtac cgggcgatgg
     2941 tgtcattgat ttccgtccga ttttcgatat tttagaaaaa cacgactaca aaggctggat
     3001 ggttgtagaa gccgaacaag atccggcact tgccaacccg tttgaatacg ccctcaaagg
     3061 cagaaaatat atccgtgaaa ccgcaggagt ttaatatgtt aaaagtaggt attattggtg
     3121 caggccgtat tggacgtgtg cattctgaaa gtattagcaa atatgtcaaa ggtgctgaaa
     3181 tcaaagcaat ctctgatgta aaaattaccg aagaattgac cgcttgggca aaatcgatgg
     3241 gtattccgga agtttatgat gactataaaa aaatcctgca agatccggaa attgatgctg
     3301 tattggtctg ctcttccacc aacactcacg ctccgatttc gattgaggca gcacaggctg
     3361 gcaaacacgt tttctgtgaa aaaccggtag atgcagaccc agctaaaatc cgtgaagtat
     3421 tgagtgcagt cgaaaaagcc ggtgtaaaat tccaagtggg ctttaaccgc cgcttcgacc
     3481 acaacttcaa ggcgattaaa gaccgtgtgg cggcaggcga catcggcgaa ccgcacgtta
     3541 tccgagtaac ctctcgtgat ccggaagccc cgccaatcga atatgtgaaa gtctccggcg
     3601 gaatgttctt tgatatgacc attcacgact tcgatatgat tcgttattta tccggcagcg
     3661 aagtggaaga agtgtttgca gtcggcaccg tattagtaaa ccctgaaatc ggcaaagcgg
     3721 gcgatattga tactgccgtt atcacgttga aactgaaaaa cggagcaatc ggcgtaatcg
     3781 acaacagtcg caaagctgcc tacggctacg accaacgtgc ggaagtgttc ggctcgaaag
     3841 gggcaatcca tatcactaat gataccggct caactgccgt attctcaggt gaaaacggcg
     3901 tggtggcgga aaaaccaaaa tacttcttct tagaacgtta tatgcaatct ttcgccgatg
     3961 aaatcagctg tttcgtagat tctgtggtaa acgacaaacc aacgttagta aacggcaatg
     4021 acggcttaca accggtactt attgccttag ctgcgaaaaa atcactggaa gaaaaccgac
     4081 cagtgaaatt gagtgaagtg gcgtaattga tcataaatac aagcggtcgg ttttactcgc
     4141 tacactcgca cttcgtgcca tcggcatagc cgatgttcaa acgcaagcat tttgcagaaa
     4201 aatttgtaaa actgaccgtt tgagttttta tttattatct tttgggaaat aaatataatc
     4261 gtgctcaatt tttattgatt gtttaaataa atagaaggct ggaattatca aaagagttaa
     4321 tacaatacca ataaaatatt taaaattttc tgtttgcatt ccaatatatt caaaagtgaa
     4381 tctaatccca agagggtaat tcccccattc ttttgccaaa cagatatgaa taatcaaaaa
     4441 gaagataata cctaaaaaac gtcgagatat tgatattctg actctcattt tttcttcttc
     4501 tttttcacat agtatctcaa ctctgcatta ttttccttag ctgcttgtat ttttaatatt
     4561 gaaagcattt cgtatttgtg tatatcttca attttaggca gctcataagt gttacatcct
     4621 attttatcaa gaaggtctga taaaataaaa atatgtaata aacgcatcat tgtaaataat
     4681 gcagtaaatg taactgaaaa aaagaaaatt gctgcaatat aatcaatggt ttttgtgaga
     4741 tatatttcct
//
LOCUS       DANLRW010000147         4594 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.148, whole genome shotgun sequence.
ACCESSION   DANLRW010000147 DANLRW010000000
VERSION     DANLRW010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4594
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.148"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            133..462
                     /gene="trxA"
                     /locus_tag="PXA71_002345"
     CDS             133..462
                     /gene="trxA"
                     /locus_tag="PXA71_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018357021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDL5106408.1"
                     /translation="MSNVIHTTDATFEQDVLKSDVPVLLDFWAPWCGPCRMIGPVLDD
                     LSVDAQFDGKVKIVKMNVDENPSVPAQFGVRSIPFLLLFKNGEVIAQQVGAIPHAQMA
                     EFIKQAL"
     gene            633..1856
                     /gene="hflK"
                     /locus_tag="PXA71_002346"
     CDS             633..1856
                     /gene="hflK"
                     /locus_tag="PXA71_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HDL5106409.1"
                     /translation="MSWNESGNQQDPWGKPGQKKAEPKPEQQEQGSQQEPTNNQRNEQ
                     QPPDLEEVFSSLLKKMGGGKGPNNSSNQPSASLGKFLPVVLGLAAVVWVGSGFYTVQE
                     AERGVVTRLGKLNDIVLPGLNWKPTFIDSVTRVNVERVSELNTSGSMLTQDENMVQVE
                     MTVQYRVEDPAKYLFSVSNPDDSLKQATDSALRYVIGHMTMDEILTTGRATVRERTWS
                     TLRDIIKTYDMGLLVTDVNFQYARPPEEVKAAFDDAIKAQEDEQRLIREAEAYARGEE
                     PIARGQAQRTIEQAQAYKEAVVLNAKGEVERLSQLLPEYKASPELTRERLYIQTMEKV
                     MKNTPKVVMDSSGNNLNVLPFDKLMNSSSVIKAEQPAAAQVVTPQVVQPQVQPRTQIQ
                     PQQAEQQEPTRKGRF"
     gene            1859..2746
                     /gene="hflC"
                     /locus_tag="PXA71_002347"
     CDS             1859..2746
                     /gene="hflC"
                     /locus_tag="PXA71_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HDL5106410.1"
                     /translation="MRRLLVPILAVVAFVVLQAITIVNEGERGIMLRFNKVHRDSDQK
                     VVVYEPGIHFKVPFIDSLKVLDARIQTLDGQEDRFVTVEKKDLLVDSYVKWRISDFGQ
                     FYTSTGGDYQKAADLLRRKVGDRLRSEIGSRTIKDIVSGSRGELMAGAQKALNAGEDG
                     AERLGIEVVDVRVKQINLPNEVSSSIYQRMRAERDAVAREHRSQGNEKAEVIRAEVDK
                     KVVLILANANKTAQALRGEGDAQAAKLYSEKFGNEPEFYSFIRSLKAYEDSFAEGQNN
                     MMLLKPNSEFLRFMQAPTK"
     gene            2920..4218
                     /gene="purA"
                     /locus_tag="PXA71_002348"
     CDS             2920..4218
                     /gene="purA"
                     /locus_tag="PXA71_002348"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010869263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDL5106411.1"
                     /translation="MGKSVAILGAQWGDEGKGKIVDLLTDRVKYVVRYQGGHNAGHTL
                     IINGEKTVLRLIPSGILRDNVTCLIGNGVVLSPEALMKEMGELEERGINVRERLKISE
                     ACPLILPYHVAMDHAREAALGKNKIGTTGRGIGPAYEDKVARRGLRVSDLFDKEHFAA
                     KLKDILDYYNFQLVNYYKVEAVDYQKTLDDVFAIADVITGMVADVTTLLHEARENGDN
                     ILFEGAQGTMLDIDHGTYPFVTSSNTTAGGVATGSGYGPRHLDYVLGIIKAYCTRVGS
                     GPFTTELFDDVGAEIARKGNEFGAVTGRPRRCGWFDAVAVRRAVQINSISGFCMTKLD
                     VLDGFKELKICVAYKMPNGKIVEYAPLAAKDWEGVEPIYETMPGWSENTFRVTKREDL
                     PQAALDYIKRIEELVGVPVDILSTGPDRVETMILRDPFAA"
     gene            complement(4378..4448)
                     /locus_tag="PXA71_002349"
     tRNA            complement(4378..4448)
                     /locus_tag="PXA71_002349"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4418..4420),aa:Arg,seq:tct)
BASE COUNT         1423 a          810 c         1058 g         1303 t
ORIGIN      
        1 aaatatttat tggtgtaatt ggtaaatctt gcttgaaatt ttatagatta atctctatct
       61 tatacaaaac tgttcgcctt aacttgccag ttagggcgtt tcttttttta tttaatattt
      121 aaggataaac ttatgagcaa tgtcattcat acaacagatg ctacatttga acaagatgtt
      181 ttaaaatcag atgtaccggt attattagac ttctgggcgc cttggtgtgg tccttgccgt
      241 atgatcggcc ccgtacttga cgatttatct gttgatgcac aatttgatgg taaagtaaaa
      301 attgtcaaaa tgaacgtaga tgaaaatcca tctgtaccag cacaatttgg cgtacgcagc
      361 attccatttt tactattatt caaaaatggt gaagtgattg cccagcaagt tggtgcaatt
      421 ccgcacgccc aaatggctga atttatcaaa caagcattat aattttaaga gcaatactag
      481 ggcgaattta tcgccctatt tttttgcaaa taaatagtga aaaaagaccg cttgtttcag
      541 ataaacctag tcaaaagctt actaaatagg tacaatcact aacttgcatt ctaagcttta
      601 aagtgcgatt cgattttatt ttggagatat ttatgtcgtg gaatgaatca ggcaatcagc
      661 aagatccttg gggtaaaccg gggcagaaaa aagctgagcc aaagcctgag caacaagaac
      721 agggttcaca acaagagccg accaataatc aaagaaatga acaacagccc cctgatttag
      781 aagaagtatt tagcagttta ttaaaaaaaa tggggggtgg aaaagggcct aataatagtt
      841 caaatcaacc tagtgcaagc ttagggaaat ttctacctgt ggttttaggt cttgcagcag
      901 tagtttgggt tggctcaggt ttttacactg tgcaagaggc tgaacgtggt gtggttactc
      961 gtttaggtaa gctgaatgat atcgtgttgc cagggttgaa ttggaaaccg acttttattg
     1021 attcggttac aagagtaaac gtagaacgtg tttcagagct gaacaccagt ggctcaatgc
     1081 tgactcaaga tgaaaatatg gtgcaggtag aaatgacggt tcagtatcgt gtggaagacc
     1141 cggctaaata tctgtttagt gtgagcaacc ctgatgacag cttaaaacaa gcaacagaca
     1201 gtgccttgcg ttatgtgatt ggtcatatga cgatggatga aattttaacc acagggcgtg
     1261 caaccgtgcg tgaaagaacg tggtcgacat tgcgtgatat tatcaaaacc tatgatatgg
     1321 gtttattggt aacagacgta aacttccaat atgcacgacc gcctgaagag gtgaaagccg
     1381 cctttgatga tgcaatcaaa gcacaagaag atgagcaacg cttaattcgt gaagcggaag
     1441 cctatgcaag aggtgaagag ccgattgcac gtggccaggc acagcgtacg attgagcaag
     1501 ctcaagctta caaagaagca gttgtgttaa atgcgaaagg ggaagtggag cgtttgagtc
     1561 aattattacc tgaatataaa gcctctccag agctgactcg tgaacgttta tatatccaga
     1621 caatggaaaa agtcatgaaa aatacgccga aagtggtgat ggattcaagt ggtaataatt
     1681 tgaatgtatt gcctttcgat aagctaatga attcttcatc ggtaataaaa gcggagcagc
     1741 ctgcggcggc acaagtagtt acaccacaag ttgttcagcc gcaagtacag ccaagaacac
     1801 aaattcagcc gcaacaagca gaacaacaag aaccaactcg taaggggaga ttttaatcat
     1861 gcgtagatta ttagtaccta tacttgctgt agttgctttt gttgtgctac aggcaatcac
     1921 cattgtaaac gagggcgagc gtggcattat gttacgtttt aacaaagttc atcgtgatag
     1981 cgatcaaaaa gtggtggtat atgaaccggg gattcacttt aaagtaccat ttatcgatag
     2041 tttaaaggta ttagatgctc gtattcaaac tctagatggg caagaagacc gttttgtaac
     2101 agtcgagaaa aaagatttat tagtggactc ctatgtaaaa tggcgaatca gtgattttgg
     2161 ccaattttat acctctactg ggggggatta ccaaaaagcg gcggatttat tacgccgtaa
     2221 ggtaggggat cgtctgcgtt ccgagattgg ttctcgaacc attaaagata ttgtatccgg
     2281 ctctcgtggt gagttaatgg caggagccca aaaagcgctg aatgccggtg aagatggagc
     2341 agagcgttta ggaattgaag tggttgatgt gcgagtgaag caaatcaact taccaaatga
     2401 agtttcttct tcaatttacc aacgtatgcg tgccgagcgt gatgcggttg ctcgtgaaca
     2461 ccgctcacaa ggtaatgaga aagcagaggt aattcgtgcc gaagtggata aaaaagtggt
     2521 gctgattttg gcaaatgcga acaaaactgc ccaagccttg cgaggtgaag gtgacgctca
     2581 agctgcaaaa ctctattcag agaaatttgg taacgagccg gaattttaca gttttattcg
     2641 tagtttaaaa gcctatgaag atagctttgc cgaaggtcaa aataatatga tgttattaaa
     2701 gccaaacagc gaattcttac gctttatgca agcaccgaca aaataattgt atctataaaa
     2761 cccgatcttg tatcgggttt ttaattttca tccctattct gatcataaca agcggtaaat
     2821 tttggctgat tttttgcaaa aaatttgaaa aaattgaccg cttgcgatat gaagttataa
     2881 tgggtttcgt tattcatcct aactaaaaga ggcatttcta tgggtaaaag tgttgctatt
     2941 cttggcgctc agtggggcga tgagggaaaa ggcaaaattg ttgatttatt aacagatcgt
     3001 gtgaaatatg tagtacgtta tcaaggtgga cataatgcag ggcatacctt aatcattaat
     3061 ggtgaaaaaa ccgttctgcg tttaattcca tcgggtattt tgcgtgataa cgtgacttgt
     3121 ttaatcggta atggtgtagt gctttctcca gaggcattaa tgaaagagat gggggagcta
     3181 gaagaacgag gcattaatgt gcgtgagcgt ttaaaaattt ctgaagcttg cccgttaatt
     3241 ctgccttatc acgttgcgat ggatcacgct cgagaagcgg cacttggtaa aaacaaaatt
     3301 ggtacaacag gacgtggtat tggcccagct tatgaagata aagtcgctcg ccgtggttta
     3361 cgtgtcagcg atttattcga caaagaacat tttgccgcaa aattaaaaga tattttagat
     3421 tactacaact tccaattagt caattattac aaagttgaag cggtagatta tcaaaaaacc
     3481 ttagatgatg tgtttgcgat tgcggatgtg attaccggaa tggttgccga tgtgacaact
     3541 ttacttcacg aagcacgtga aaacggcgac aatattttat ttgaaggggc tcaaggcacg
     3601 atgttagata tcgaccacgg tacttacccg ttcgtaacca gctcgaatac gacagcaggc
     3661 ggtgtggcaa ccggatcagg ctacggtcct cgtcatttag attatgtatt agggattatc
     3721 aaagcctact gtacccgtgt aggtagtgga ccgttcacca ccgaactatt tgacgatgta
     3781 ggtgctgaaa ttgctcgcaa aggtaatgag ttcggagcgg taaccggtcg ccctcgccgt
     3841 tgtggctggt ttgatgccgt agccgttcgc cgagcagtgc aaatcaactc catttcaggc
     3901 ttctgtatga ctaaactcga tgttttagac ggattcaaag agctaaaaat ctgcgttgcc
     3961 tacaaaatgc caaacggaaa aattgtcgaa tatgcccctc ttgcagcaaa agactgggaa
     4021 ggtgttgaac caatttatga aacaatgccg ggttggtctg aaaatacttt ccgtgtgaca
     4081 aaacgtgaag atttaccaca agccgcatta gattacatta aacgtatcga agagctggtc
     4141 ggtgtgccgg tagatattct ttctacaggt ccggatcgtg tcgaaacgat gattttgcgt
     4201 gatccttttg cagcttaata aaagataaaa taaagccatt tagtgagata gagctagatg
     4261 gcttttttgt ttgaaccagt aaactttact ttggcacaat tttgtcacaa tacagaaaat
     4321 agttctttag cgtgagtttt tgaggctgtg taagtatttg aatttaaaag aatttaatgg
     4381 cacgccctaa aggattcgaa cctttgaccc acgccttaga agggcgatag gtattttata
     4441 aaaggcgttt attttaacta ataaaaacaa agacttatag agataacccc tctatattac
     4501 ctaccattat ttcacatctt tttacattaa ataacaccat ttacggtaca tttatggaac
     4561 acgttggtga tgagctagtc ttcaaaagtt acta
//
LOCUS       DANLRW010000148         4580 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.149, whole genome shotgun sequence.
ACCESSION   DANLRW010000148 DANLRW010000000
VERSION     DANLRW010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4580
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.149"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            66..1262
                     /locus_tag="PXA71_002350"
     CDS             66..1262
                     /locus_tag="PXA71_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDL5106412.1"
                     /translation="MLNTQFRTHFPFFEKSDGWTYLDSAATTLKPDVLIEATSEFYAS
                     AGSVHRSQYDLPQTEQYELARDLVAKRFNVETREAVIWTSGTTQSINTVAYGLEHQIA
                     AGDEIVISVAEHHANFIPWQQLAQRTRAKLVVLPLNDKYEIELETLKNALSEKTKIVA
                     FNLVSNVTGVRQPAEQIIPLIRQSCSAKIVLDIAQAVCSEQVDVQKLDADFYAFSAHK
                     MYGPNGVGVLTGKLQSLEQIQPLVFGGKMLKNITESELTVAELPYRLEAGTPNIAGII
                     GFGQVLAWLEKWDFVALNHQLYDLAEYTCKRLNSYQNLQIIGQQNTPTISFVVKNQHP
                     ADIAAFLTQSKIAIRQGEHCAKPYLRHLEEVGTVRLSLAHYNNQQDVEHFFNALDFTL
                     EILQES"
     gene            1369..2343
                     /gene="pfkA"
                     /locus_tag="PXA71_002351"
     CDS             1369..2343
                     /gene="pfkA"
                     /locus_tag="PXA71_002351"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007523004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HDL5106413.1"
                     /translation="MSKKIKKIAVLTSGGDAPGMNAAIRGVVRTALNEGLEVCGIQDG
                     YYGLYHDKVIPLDRRSVSETINRGGTFLGSARFPDFKRPEVRKHCVETLKKYSIDALV
                     VIGGDGSYMGAKLLTEEFGYPCIGIPGTIDNDIVGTDYTIGYQTALETALDAIDRLRD
                     TSSSHQRISIVEIMGRHCGDLTLSAALAGGCEYVIVPEKGLDKDALMRSIEEGFHKGK
                     RHSIIAITELMTDVHALAKEIEARFGNETRATVLGHIQRGGSPCAFDRILASRMGVYA
                     VELLLQGFGGHCVGIQNEQLVHHDIIDAINNMRRPFKEELFEASRKLF"
     gene            2411..3118
                     /locus_tag="PXA71_002352"
     CDS             2411..3118
                     /locus_tag="PXA71_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwiC-like family protein"
                     /protein_id="HDL5106414.1"
                     /translation="MFKEKPVISNQHGALAMAMLPFLYAVIESGFSTLHIFFGLSWLF
                     LYFFSYPFLSLFSKKPTERNKKWAKIYFGLSILFALPLIYAQPSILQFLPIILPLGLV
                     QVHYAKQKDERNLWNDIAGILTFGIMGMAAYYLVTKQYQFEILLHPTLFFIATTFYIK
                     SMVRERRNPIYMEISIAIHLVLAMLYILCSLQAVFFAYLIATARAIIVPSFGWNVKQV
                     GMLEFPVILLFLASLIW"
     gene            complement(3163..>4580)
                     /gene="thiI"
                     /locus_tag="PXA71_002353"
     CDS             complement(3163..>4580)
                     /gene="thiI"
                     /locus_tag="PXA71_002353"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HDL5106415.1"
                     /translation="IKSDSVRKRFIKILTSNIRNVLLKETENVSVVRHWDFIEVRAKV
                     DEETALVLDLLKRTPGIHHILEVEETPFTDMHDIFEQTYAAVKAELEGKTFSVRVRRK
                     GKHDFRSLDVERYVGGGLNQRIETAKVKLTNPDVTVRIDIEHDKMLLIKARHEGLGGY
                     PIGTQEDVLSLISGGFDSGVSSYMLIRRGSRVHYCFFNLGGAAHEIGVKQMAYHIWSR
                     YSTSHKVRFIAINFENVVGEILEKVDNGQMGVVLKRMMVRAASRIAERFDIQAIVTGE
                     ALGQVSSQTLTNLRLIDKASDTLVLRPLITHDKEQIIAMAKAIGTDDIAKSMPEFCGV
                     ISKNPTVKAIETKILEEEGNFNFEVLEQAVQTASYLDIREIAQQTEKEVVSVETTTEL
                     SKNDVVLDIRSPEEVDEKPFRLDGVEVKELPFYKLSSQFSTLDQSKTYLLYCQRGVMS
                     KLQALYLKENGYSNVKVFRVK"
BASE COUNT         1299 a          998 c          900 g         1383 t
ORIGIN      
        1 aacattcctt tataataggt attttcttgg taactcaatt ttccacaact cttaggaatt
       61 aacttatgct taacacccaa tttcgcaccc atttcccttt ttttgaaaaa tctgacggat
      121 ggacgtattt agattctgcc gctacaacgc tgaaacctga tgtactcatt gaagcaacaa
      181 gtgagtttta cgcttctgcg gggtcggtgc atcgcagtca gtacgatttg ccacaaaccg
      241 aacaatatga attagctcga gatttagtcg caaaacgttt caatgtggaa actcgtgaag
      301 cggtgatttg gacaagcggt acaacccaaa gtattaacac cgtggcttat ggcttggagc
      361 atcaaattgc agcaggcgat gaaattgtaa tttcagtggc ggaacatcac gctaatttta
      421 ttccttggca gcagttggca cagcgtacaa gggcgaaact cgtggtgttg ccacttaatg
      481 ataagtatga aattgagctt gaaaccctta aaaatgcgtt atcggaaaaa accaaaattg
      541 ttgcctttaa tttagtttct aacgtaacag gagttcgcca gccagcggaa caaataatcc
      601 cgcttatccg ccaatcttgc tctgctaaaa ttgtgttaga tattgctcaa gcagtttgct
      661 cagagcaagt ggacgttcag aaattagatg cagatttcta cgctttttcc gcccataaaa
      721 tgtatggtcc aaacggtgtg ggcgtgctta ccggcaaatt gcaaagtttg gagcaaattc
      781 aaccgcttgt atttggcggc aaaatgctga aaaacattac ggaaagtgaa ttaactgtgg
      841 cagagttacc ttatcgcttg gaagctggca cgccgaatat cgccggcatt atcggctttg
      901 ggcaagtgct agcttggctc gaaaaatggg attttgtcgc tcttaatcat cagctttatg
      961 acttggctga atacacctgc aagcggttaa attcttatca aaatttgcaa attatcgggc
     1021 aacaaaatac accgactatt agctttgtgg tgaaaaatca gcaccctgcc gatattgccg
     1081 ctttcttaac ccaaagtaaa attgcgatcc gccaagggga gcattgtgcc aagccttatt
     1141 tacgccattt agaagaggtc ggaacagttc gactttcact tgcccattac aataatcaac
     1201 aagatgttga gcattttttc aacgctctag attttaccct tgaaattttg caagaaagct
     1261 aagctaaatc aaaaaaatac gtatttttta gtagaacgaa aaggctgaat attgtaacct
     1321 tgcaccagtt tccaatttaa ctttaattta tcaacaaggt gtttttaaat gagtaaaaaa
     1381 atcaaaaaaa ttgcagtatt aaccagtggt ggtgatgcac caggaatgaa cgcggcaatc
     1441 cgtggtgtgg ttcgtaccgc acttaatgaa ggtttagagg tttgtggtat tcaagacggc
     1501 tactatgggc tttaccacga taaagtgatc ccacttgacc gccgttccgt gtctgaaacc
     1561 atcaaccgag gcggtacatt cttaggttct gcccgcttcc ctgattttaa aagaccagaa
     1621 gttcgcaaac attgtgtcga aaccttaaaa aaatacagca ttgatgcatt agtggttatt
     1681 ggtggcgacg gttcttatat gggggctaaa ttattaaccg aagaatttgg ttacccttgt
     1741 atcggtattc cgggtacgat tgataacgat attgtgggaa cggattacac catcggctat
     1801 caaactgccc ttgaaaccgc attagatgcg attgaccgcc tgcgtgatac ttcaagttca
     1861 caccaacgta tttcgattgt ggaaattatg ggtcgccact gtggtgattt aaccctaagt
     1921 gctgccctcg ccggtggttg cgaatatgtg atcgtaccgg aaaaaggctt agataaagat
     1981 gcattaatgc gaagcattga agaaggtttc cacaaaggta aacgccattc aattattgca
     2041 attacagaat tgatgaccga tgttcacgca ttagcgaaag aaattgaagc acgtttcggc
     2101 aatgaaaccc gtgcaaccgt attaggtcat attcaacgtg gtggttcgcc ttgtgccttc
     2161 gaccgtattt tggcctcccg tatgggcgtc tatgcggtgg aattattact gcaaggcttt
     2221 ggcggtcact gtgtcggtat tcaaaacgag cagttggttc accacgatat tattgatgcg
     2281 atcaataata tgcgtcgtcc gttcaaagaa gaattatttg aagcctctag aaaattattc
     2341 taacttttct tacaatttaa aggcggctgt ttagtcgcct ttttatttgc cacattaaga
     2401 gggaaattga atgttcaaag aaaaacccgt tatatccaac caacacggtg cattagcaat
     2461 ggcaatgttg ccgtttctct acgccgttat tgaaagtggt tttagcactt tgcatatttt
     2521 ctttgggctg tcgtggctgt ttctctactt cttttcctac ccttttctct cacttttcag
     2581 taaaaagcca actgaacgca ataaaaaatg ggcgaaaatc tactttggct taagcattct
     2641 atttgcatta cctttgatct acgctcagcc ttcgattttg caatttttac cgataattct
     2701 accgcttggg ttagtgcaag ttcactacgc caaacaaaaa gatgaacgca atttatggaa
     2761 tgatattgcc ggcattctaa cctttggcat aatgggaatg gcagcttatt atctggtaac
     2821 gaaacaatat cagtttgaga ttctgctcca ccctacccta ttttttattg ctacgacttt
     2881 ctatataaag agtatggtgc gagagcgaag aaacccaatt tatatggaaa tcagtattgc
     2941 aatacatttg gttttagcaa tgctttacat actctgctct ctacaagcgg tcttttttgc
     3001 ttatttaatt gcaactgccc gagccattat tgtgccaagc tttggctgga atgttaaaca
     3061 agttggaatg cttgaatttc ctgtgatctt actcttttta gcaagcctta tttggtaaaa
     3121 aattgcacct taatcaatca ttaaggtgca atcaaagagg cattatttca ctcgaaacac
     3181 ttttacattg ctgtagccat tctctttcaa ataaagagcc tgcagtttac tcattacccc
     3241 acgttggcaa tagagcaagt aggttttgct ttggtcaagc gtactaaact ggctggaaag
     3301 tttataaaac gggagttctt ttacttcaac cccgtctaaa cggaatggtt tttcatcaac
     3361 ctcttccggg ctgcgaatat ctagcacaac atcgttttta ctcaattctg ttgtggtttc
     3421 aaccgaaaca acctcttttt cggtttgctg agcgatctca cgaatatcta aataactcgc
     3481 cgtttgaacc gcttgttcta gtacctcaaa attaaagttg ccttcttctt ccaaaatttt
     3541 agtttcgatt gccttaaccg tcggattttt agaaattact ccacagaact ccggcattga
     3601 tttagcaata tcgtcagtgc ctatcgcttt tgccattgca ataatctgct ctttatcgtg
     3661 agtgatgagc ggacgtaata ccagcgtatc tgatgcctta tcaattaaac gtaaattagt
     3721 cagtgtttgg ctagagacct gccccaacgc ctcaccggtc acaatcgctt gaatatcaaa
     3781 acgctcggca atacggcttg ccgctcgcac catcatacgt tttaatacca cgcccatttg
     3841 tccgttatca actttttcta aaatctcacc cactacattt tcaaaattaa tggcgataaa
     3901 acggactttg tgcgaggtac tataacggct ccaaatatga tatgccatct gtttcacgcc
     3961 aatttcgtgt gcggcaccac ctaaattgaa aaaacagtaa tgcacacgag aacctctgcg
     4021 aatcagcata tagctcgata cacccgaatc aaaaccaccc gaaatcaatg acaacacatc
     4081 ttcttgtgtg ccgattggat acccgcctaa cccttcgtgg cgagctttaa tcagcaacat
     4141 tttatcatgt tcaatatcaa ttctgaccgt aacatctggg ttggttaatt tcactttcgc
     4201 cgtttcaatc cgctgattca gcccaccacc gacataacgc tctacatcaa gagaacggaa
     4261 atcgtgcttt cctttacggc gaacccgcac gctaaacgtt ttgccttcta gttcagcttt
     4321 cactgcggca taagtctgct caaaaatatc gtgcatatcc gtaaaagggg tttcctccac
     4381 ttctaaaata tggtgaatac ccggcgtgcg tttaagcaaa tccagcacta atgccgtttc
     4441 ttcgtccact ttcgcccgaa cttcaataaa gtcccaatgg cgaaccacag acacattttc
     4501 agtctctttt aataatacgt tgcgaatatt tgaggttaaa attttgataa agcgtttccg
     4561 aacagagtcg cttttaatca
//
LOCUS       DANLRW010000149         4538 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.150, whole genome shotgun sequence.
ACCESSION   DANLRW010000149 DANLRW010000000
VERSION     DANLRW010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4538)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4538)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4538
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.150"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            63..746
                     /locus_tag="PXA71_002354"
     CDS             63..746
                     /locus_tag="PXA71_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HDL5106416.1"
                     /translation="MFGLFASILTGARGGWLAFIPICFFILFLNLRQLNKKAIFLILL
                     ALISSLSFFISKPEFGIQKRYNAAKNDIIVFLEKGNRHSSLGARFDMWENALIGIREK
                     PLLGHGSTGYETFKKKQIETKQMAKTTLRFNSLHNQYLEAFVKRGVVGFMALMAILII
                     PFVIFAKRLKAKNREVKCMAILGIVHIISHSFFFLSQSFLAHNSGSLFYFFVLILLYH
                     LVKQNEEII"
     gene            complement(848..1855)
                     /gene="rfbB"
                     /locus_tag="PXA71_002355"
     CDS             complement(848..1855)
                     /gene="rfbB"
                     /locus_tag="PXA71_002355"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HDL5106417.1"
                     /translation="MIILITGGAGFIGSALVRYLIEHTPHTVINVDKLTYAGNLASLE
                     SVAHHERYHFEKADICASGQISEIFGKYQPDVVMHLAAESHVDRSISGAADFIQTNIV
                     GTYTLLEAARAYWDTLPEPRKSAFRFLHISTDEVYGDLAKSEELFTEKTPYNPSSPYS
                     ASKAASDHLARAWHRTYGLPTVITNCSNNYGAYQYPEKLIPLMILNALEGKSLPVYGN
                     GLQVRDWLFVEDHIRALYLVLQKGQIGETYNIGGHNEKTNIEVVRSICSILQEMVPNN
                     PLVVGQYADLITYVQDRPGHDFRYAIDTSKIEKELDWKPKETFESGLRKTVEWYLANR
                     N"
     gene            complement(1852..2433)
                     /locus_tag="PXA71_002356"
     CDS             complement(1852..2433)
                     /locus_tag="PXA71_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase"
                     /protein_id="HDL5106418.1"
                     /translation="MLEKIEKLIDEINKLHLAFSKDYFETGKIEKVNLKHTFAKVPTP
                     HILAYRLNLHESINDYLYRADLEGISYFYRVKTSESILDKIERFKQRSEGYPVNSILN
                     DIFGARIIVSSEVIQQVMESLDYWQEKYGLKNWYLRDKDEYVGIHIYFKNSSNFYYPW
                     ELQIWDKKDAEKNIQSHIKYKRNFVNQISYSPL"
     gene            complement(2454..3725)
                     /locus_tag="PXA71_002357"
     CDS             complement(2454..3725)
                     /locus_tag="PXA71_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HDL5106419.1"
                     /translation="MSIQQKKRHSRWYERIFFSTAVQSILGVMFSSVLPAIYFWGEKF
                     NSIETRSNTIIATSLAFVMIAISLRVLMKYPGNKSASFVFSTVISWYAVLLIVLTIFR
                     FDYSNTLLGTSFILTILFCFIGYFLSRSWIIPKIALVPFGRAINLNRIQNVEWIQLSE
                     PILGEKRINSIAVDLHYPDLSAEWHKFLAKCTLNGIPVYNVRQLEESLTGRVKIRHMY
                     ENDLGSLLPSPIYSLVKRIIDIALIVATFPITLPIMTITAIAIRLESEGGAMFIQKRV
                     GQGGKEFNIYKFRSMCKDSEKDDAQFASSADMRVTRIGKFIRKTRIDELPQFFNVLKG
                     DMSLIGPRPEQTAFVDKFEEEIPFYNYRHIVKPGISGWAQVVQGYAADVDDTKVKVEH
                     DFYYIKHFSLWLDILIIFKTLKTMLTGFGAR"
     gene            complement(3729..4537)
                     /locus_tag="PXA71_002358"
                     /pseudo
     CDS             complement(3729..4537)
                     /locus_tag="PXA71_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
BASE COUNT         1482 a          882 c          738 g         1436 t
ORIGIN      
        1 ttgcctttta ttggctttca aaaaaaagaa ttaaaactgg cattgcctac ctggtttttg
       61 ccatgtttgg gttatttgcc agtattctaa caggagcaag aggcggctgg cttgcattca
      121 ttcccatttg cttttttatc ctatttttaa atttaagaca gctaaataag aaagctattt
      181 tcctgattct attagcactt atatcttcac tctcattttt tatctccaaa ccagaatttg
      241 gcatacaaaa acgatataat gcagctaaga atgatattat cgtattttta gaaaaaggaa
      301 atagacattc atctctggga gctcgttttg atatgtggga aaatgcgctt atcggaatcc
      361 gtgaaaaacc gctattagga cacggtagca caggctatga aacattcaaa aagaaacaga
      421 ttgaaacaaa acaaatggca aaaacaacgc ttaggtttaa tagcttacac aaccaatacc
      481 tagaagcctt tgtgaaaaga ggtgtagttg gttttatggc gctaatggct attttaatta
      541 ttccatttgt tatttttgcc aaacgattaa aggcaaaaaa tagagaggta aaatgtatgg
      601 cgatattagg cattgtacat attatttcgc attcattctt tttcctaagc caatcatttt
      661 tagcccataa ttcaggctca ttattctatt tctttgtgtt aattttactc taccatttag
      721 tcaaacagaa cgaagagata atatgataaa acaatagaag aaagttggga atataaccga
      781 ggtggtaact tcatcttcta ccacaggata aatgtcggga tatttcctct ttttctgctt
      841 cttactacta attccgatta gccaaatacc attccactgt tttacgcaag ccactttcaa
      901 aagtttcttt cggtttccag tcgagttcct tttcgatttt tgaagtatca attgcatagc
      961 ggaaatcgtg gccagggcga tcttgcacat aagtaattaa atcagcatat tgtcctacaa
     1021 caagcgggtt atttggcacc atttcttgca aaatagaaca gatagaacga accacttcga
     1081 tattggtttt ttcattatgc ccgccaatat tgtaggtttc tccgatttgc cctttttgca
     1141 acaccaaata gagggcacga atatgatctt ccacaaacag ccaatctctg acctgcaagc
     1201 cgttgccgta aacaggtagg gatttacctt ctaaggcatt taaaatcatt aacggaataa
     1261 gtttttcggg atattggtat gccccataat tattggaaca gttggtgatg acagtcggta
     1321 aaccgtaggt gcgatgccaa gcccgagcca gatgatcgct ggcagcttta gatgccgaat
     1381 aggggctact tggattataa ggggttttct cggtaaataa ttcctcgctt ttggctaaat
     1441 caccatagac ctcgtcggtc gagatatgta gaaagcgaaa cgccgatttc cttggctcag
     1501 gtaacgtgtc ccaataggct ctcgctgcct ctaataaagt ataagtgccg acaatattgg
     1561 tttgaataaa atctgctgcc ccagaaatag agcgatcaac atggctttcc gctgctaagt
     1621 gcattaccac atcaggctga tatttgccaa aaatctcaga aatttgaccg cttgcacaaa
     1681 tatctgcttt ttcaaaatgg tagcgttcgt gatgtgcgac actctccaat gaggctaaat
     1741 ttcccgcata ggtgagctta tccacattga taactgtgtg tggagtatgt tcaatcagat
     1801 agcgaactaa tgcagatccg ataaaaccgg ctccgccagt gatgaggatg atcataaagg
     1861 tgaatatgaa atttgattca cgaaatttcg tttgtattta atatggcttt gaatattctt
     1921 ttcagcgtct tttttatccc aaatttgcaa ttcccaagga taataaaagt tacttgaatt
     1981 cttaaaataa atatgaatac ccacatattc atctttatct ctcaaatacc aattttttag
     2041 tccatatttt tcttgccaat aatctaatga ctccattact tgctgaatca cttcactaga
     2101 aacaataata cgagctccaa aaatatcgtt gagaatgcta tttactggat aaccttcact
     2161 acgctgttta aaacgctcga ttttatctaa aatcgattct gaggttttta ctcggtaaaa
     2221 ataagaaatt ccctctaaat ctgcacgata taaataatca ttaatagatt cgtgtaaatt
     2281 aagacgataa gctaaaatat gtggcgtagg cactttggca aaagtatgct taagattcac
     2341 tttttcaatc ttacctgttt caaagtagtc tttcgaaaaa gctaagtgca acttgttgat
     2401 ttcatcaatg agtttttcta ttttctcaag catgctattc actctctaat ttattatctt
     2461 gccccaaatc cagttagcat tgttttcaat gttttaaaaa taattaaaat atcaagccat
     2521 aaagaaaaat gcttaatata gtagaagtca tgttctactt ttacttttgt atcatcaaca
     2581 tctgccgcat aaccttggac gacctgagcc caaccggaaa tacccggttt aacgatatgg
     2641 cgataattat agaatggaat ttcctcttca aatttatcta caaaggctgt ctgttctggg
     2701 cgaggaccaa ttaagctcat atcacctttt aatacattaa aaaactgagg tagctcatca
     2761 atacgagttt tacggataaa tttcccaata cgagttaccc tcatatccgc actcgaagca
     2821 aactgtgcat catctttttc ggagtcttta cacatactac gaaatttata aatattaaac
     2881 tcctttccac cttgcccaac gcgtttttga ataaacattg ctccaccttc actttctaag
     2941 cgaatagcaa tagcggtgat tgtcataata ggtaaagtaa tgggaaacgt agcaacaatc
     3001 aatgcaatat caatgatacg cttcactaat gagtaaattg gagaaggaag taatgaacct
     3061 aagtcatttt catacatatg gcgaattttg acacgcccgg ttaaagattc ctcaagctgg
     3121 cgaacgttat atacaggaat accattcaat gtacatttcg ctaaaaattt atgccattct
     3181 gcggacaaat caggatagtg taaatctacc gcaatagagt taattctctt ttcccccaat
     3241 attggttcac ttaattgaat ccactctaca ttctgaattc ggttcaaatt gatagctctt
     3301 ccgaatggaa ccaaagcgat tttagggata atccaacttc ttgaaagaaa ataaccaata
     3361 aaacaaaata gaattgtgag tataaagctc gtacctagca atgtattaga ataatcaaat
     3421 ctaaatattg ttaacacgat taataaaacc gcataccaag aaataacggt ggaaaaaaca
     3481 aaacttgctg acttattacc tggatatttc attaacactc ttaagctgat agctatcatt
     3541 acaaaggcaa gagaagtcgc tataatcgta ttagaacgag tttcaataga attaaatttc
     3601 tctccccaaa aatagatagc gggtaagaca cttgagaaca taacgcccaa aatactttga
     3661 acagctgtac taaaaaagat acgttcatac caacgagagt gtcttttctt ttgctgaatg
     3721 ctcataattt atccttttct taatttctta taaagtcttc ctaaaagaga tctaggcaat
     3781 aaccgtggta aggctctaag tataaaaaac atgcttgatg agattattga ttgtaatccc
     3841 aactcttttt tcaattttgc taattggtac tcactcttaa tgtaattcca ccctttacgc
     3901 cgagcgtaca ttgcagaacc tgaacgaaca tttaccagta catctggtaa attatacacc
     3961 tcatatttct gtgtaataac tcgtaaccat aaattgtaat cttccatata aagatgatgc
     4021 tgatagcctc caacatgctc gatcacagat tttttatagg ctactgccat atggttaaaa
     4081 ggatttctta gtaatgctga aatacgaatt tcatcatcat taatgggcac ttgttttata
     4141 cccagagaat tagacattgt ttcgtcaaat tcttcaactt gtccccccaa taaaaccaca
     4201 tcaggatttt tactaataaa atcaatttgc ttttcaaatc gagatggtaa gcaaatatca
     4261 tcagtatcca ttctaaacac ccactcatta gagcagtgtt ttaagccttc atttaaggcc
     4321 ggcctaaacc cacattttgt ggtaaactaa caacaacaag cggtaatttt tcagtaaaat
     4381 gttgcacaat tcgctctaaa tctccaggaa ttataccatc aaaaaccaca acaatttcac
     4441 ttgctggtaa agtttgggat actaaagaat ctaaacacat ctctaaataa gctggttttt
     4501 ctttataata caaagatatt aatatcgaaa acttcaca
//
LOCUS       DANLRW010000150         4355 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.151, whole genome shotgun sequence.
ACCESSION   DANLRW010000150 DANLRW010000000
VERSION     DANLRW010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4355
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.151"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(59..2623)
                     /locus_tag="PXA71_002359"
     CDS             complement(59..2623)
                     /locus_tag="PXA71_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HDL5106420.1"
                     /translation="MRIAKIIFSALLSLLVLGGVIGGLLYMHFKSDLPDVATLKNVEL
                     QQPMQIFTLDGKLIGEVGEERRIPVKLDDIPPMLVKAILATEDARFYEHKGIDPKGIM
                     RAIWRTSQGDTQGASTITQQLAKNFFLTPERSLERKAKEAILALEIEQVLSKNEILEL
                     YLNKIYLGYRSHGVAAAAKTYFNKSLKDLTLSEIAIIAGLPKAPSTMNPLYSVKRAED
                     RRNVVLGRMLETGDITKEEYEKAKAEPVVANYYGATLEFRADYVTEMVRQEIVKRYGE
                     NIAYNKGLKVYATVLSADQKAAQDALRENLIDYDRRHGWRGAEKLWTGSSAWDDEKII
                     DHLSKLPKSEPFTPAVVMQADKSKYTILLANGDISVLKRTNASFAPKGLKAGEQIWVR
                     QNKNREWALGQIPEVNSALVSINSENGAIESIVGGFSFEQSRFNRATQSLVQVGSAIK
                     PFIYTAAMNKGLSLSTTISDSPIVIKKKGQKEWRPKNADGVYGGPLRTRVALGKSKNM
                     VAIRILQMAGIDYVADYLQRFGFNRNQYVATESLALGAASFTPLEMARAYAVFNNGGY
                     LIEPYIIDRIIDAQGYELYQANPVVACNSCDSPVVYPEPKYFESVKIHDEAQVGVQTI
                     ANSSNNDDDDVVEDVGDSEPELQANNSEKNAPSLMAESSHHIKGLRYAPHVISDELAF
                     LMRSALATAITGEPEYGWRGTSYKMLNTIKRADVGGKTGTTNNAKATWYAGFGANIST
                     VVYVGFDDNKRVLGRGASGSSTALPAWTNYMKVALSDKPVEKSTLPKNIIEVNIDPNS
                     GFLGNGRKEYFIKGTEPTKRYIVERAYTEKAPQKTESAPLRLGLPPPGVLKSGELF"
     gene            2747..3445
                     /locus_tag="PXA71_002360"
     CDS             2747..3445
                     /locus_tag="PXA71_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComA"
                     /protein_id="HDL5106421.1"
                     /translation="MKLLKAHSKTPSNRIILGLSEDEQRYCLVKNKAEKFTVFWQAKP
                     ASIEELIGNLTPQEQAMMTLVRPIPYQYIWRKTVFMANTLNEAQLHRKVIHILKNEQP
                     LALDLLNIDYQRFPSSNDNLDKVVIYAVRKSYTENLSQFNSILDCELHCYARAIIHLT
                     QSQNNQPAPCFSFKQKYFQFTETELLILQTEPEDCIHLSDLKIDHLEIECEQEKQLYC
                     LALGASLWNGKVLI"
     gene            3421..3942
                     /locus_tag="PXA71_002361"
     CDS             3421..3942
                     /locus_tag="PXA71_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106422.1"
                     /translation="MEWQGIDLSANRKNNWFAGSDKGIKNVIYTLLLSALISLALIFL
                     YLQKNQEIQPLAQQLELVKTDILNIENKIISLNSNHTNTLPFAEPKKIAQLLAIIDNL
                     PLKNGGIETIQIYLETDLYLKIIGNLDNQSDFQSLESYLYQQDLFETKTEQINVNHKN
                     EIQFIFTLKHKGN"
     gene            3944..>4355
                     /locus_tag="PXA71_002362"
     CDS             3944..>4355
                     /locus_tag="PXA71_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106423.1"
                     /translation="MFSIHSKIEAAYSNPNSSLFQFICFIRKYPKALPFGIMMIFIIP
                     PMIMLIKSYIEVNHILKNIENDKINFNHQQNKYDSIINKAKNQNSQENNLTEINSNIQ
                     ILAEKHQLTIESLQWNLEQGKSIELSIIGNSRSLF"
BASE COUNT         1400 a          918 c          692 g         1345 t
ORIGIN      
        1 atcgcaagaa atccccctat ttttcaactt ttaagagcat tatccttgta ataaattatt
       61 agaataattc accgcttttt agcacccctg gtggaggtaa tcctaaacgt aacggcgcag
      121 attctgtttt ttgaggcgct ttttcagtat aagctctctc tacaatataa cgttttgtag
      181 gctcagtacc cttaataaaa tactctttac gtccatttcc taagaaacca ctattagggt
      241 caatattaac ctcaataata ttttttggaa gggtactttt ttcgacaggc ttatctgaca
      301 atgcaacttt catataattt gtccaagctg gtaaagcagt actagaacct gaagcacctc
      361 tacctaatac tcttttatta tcatcaaagc caacgtacac aacagtagaa atattagcac
      421 caaatcccgc ataccaagtt gccttggcat tattggttgt accagtcttc ccgcccacat
      481 ccgctcgttt tatcgtattg agcattttat agcttgttcc tcgccagcca tattcaggct
      541 caccagtaat tgctgtagct aaagcactac gcattaaaaa agcgagttca tcactaataa
      601 catgaggagc gtaacgtaac cctttgatat gatgagaaga ttctgccatt aagctcggcg
      661 catttttctc gctattgttc gcttgtaatt caggttctga atcgccaaca tcttccacaa
      721 catcgtcgtc atcattattc gaggaattcg ctatagtttg tacaccgact tgagcttcat
      781 catgaatttt gactgattca aaatatttag gctcagggta aacaactggg ctatcgcaac
      841 tattacaagc tactacagga tttgcttgat ataactcgta gccttgggca tcaataatac
      901 ggtcaatgat atatggttca atcaaataac ctccattatt aaatactgca taagctcgag
      961 ccatttctaa tggcgtaaaa gatgcagcac ccaatgcaag agattctgtt gcaacatact
     1021 gatttcggtt aaagccaaaa cgttgtaagt agtctgcaac ataatcaatc cctgccattt
     1081 gtaatatacg aatagccacc atatttttcg atttacctaa tgcaacacga gttctcaacg
     1141 ggccgccata aaccccatcg gcatttttag gtcgccactc tttttgccct ttctttttaa
     1201 tgacaatagg agaatcgcta attgttgttg aaagacttag ccctttattc attgccgctg
     1261 tgtaaataaa cggtttaatc gcagagccta cctgaactaa tgactgagtc gcacgattga
     1321 aacggctttg ttcaaagcta aagcctccaa cgatagattc aatggcaccg ttttcactat
     1381 taattgacac tagggctgaa tttacctccg gaatttgtcc taaagcccac tccctatttt
     1441 tattttgacg tacccaaatt tgttcacctg cttttaaccc tttaggtgca aaagaagcat
     1501 ttgtacgttt taaaacagag atatcaccat ttgccaataa aattgtatat tttgatttat
     1561 ctgcttgcat tacaacagct ggtgtaaacg gctctgattt tggcagctta cttaaatgat
     1621 cgataatttt ctcatcgtcc caagcagaac tacctgtcca taatttttca gcgcctcgcc
     1681 aaccatgacg gcggtcataa tcaatcaaat tttcacgtaa cgcatcttgt gctgcttttt
     1741 ggtctgctga aagtaccgtg gcgtacactt ttaagccttt gttataagca atattttctc
     1801 catagcgttt cacaatttct tgacgaacca tttctgtcac ataatccgct cgaaattcta
     1861 atgtcgcacc atagtagtta gctactactg gctctgcttt agctttctca tattcctctt
     1921 ttgtaatatc tccggtttct agcattctcc caagcactac attacgacgg tcttccgccc
     1981 gttttactga ataaagtgga ttcatcgttg aaggcgcttt tggaagccct gcaataattg
     2041 ctatttcaga aagggttaaa tctttcaaag atttattaaa ataagtttta gccgcagcgg
     2101 caacaccgtg agaacgatac cctaggtaaa ttttgtttaa atacagctcc agaatctcat
     2161 ttttactgag aacctgttca atttctaaag ctaaaattgc ctctttggcc ttacgctcta
     2221 aactacgttc aggtgttaag aaaaagtttt tcgccagctg ctgggtgatt gtacttgcgc
     2281 cttgagtatc tccctggcta gtgcgccata ttgcacgcat aataccttta ggatcgatcc
     2341 ctttatgctc gtaaaaacgt gcatcttcgg tagcaagaat cgcttttact aacatcggtg
     2401 gaatatcatc aagcttgacc ggaatacggc gttcttctcc tacttcacca attaatttac
     2461 catctaaggt aaaaatctgc ataggctgct gtaactctac atttttcagc gttgccacat
     2521 caggcaaatc agatttgaaa tgcatgtaca gtaaaccacc aattacccca cctaaaacca
     2581 agagtgaaag taaagcacta aatattattt ttgcgatccg catcgaaaaa atctcttttg
     2641 gttaatgacg aaacataaat ttaaagccaa tattaggtca ctaagtataa gctaaaaacg
     2701 cttacttcgc ataactaatt gcaaaacttt ccttactata cttactatga aattacttaa
     2761 agcacattca aaaacacctt caaaccgtat catcttaggc ttaagtgaag atgaacaacg
     2821 ttactgctta gtcaaaaata aagcagaaaa attcaccgtt ttttggcaag ccaagcctgc
     2881 gagcatcgaa gagcttatcg gtaatctcac cccacaagaa caagcaatga tgacgctggt
     2941 tcgcccgatc ccttaccaat acatttggcg aaaaaccgtt tttatggcta acaccctcaa
     3001 tgaagctcaa ttacaccgta aggtaattca cattttaaaa aatgagcagc cacttgcatt
     3061 ggatctactc aatattgact atcagcgatt tccaagcagc aacgataatc tggataaagt
     3121 ggttatctac gccgtgcgaa aaagttatac cgagaatttg agccaattta acagcatctt
     3181 agattgtgag ctgcattgct atgcacgggc tataattcat ttaacacaat cccaaaataa
     3241 tcagcctgcg ccctgttttt catttaaaca gaagtacttc caatttaccg agacggaatt
     3301 actgatattg caaacagaac ctgaggattg tattcatcta tctgatctca aaattgacca
     3361 tcttgaaatc gagtgtgagc aagagaaaca gctatattgc ctcgccttag gagcaagttt
     3421 atggaatggc aaggtattga tttaagtgct aatcgaaaaa ataactggtt tgccggcagt
     3481 gataaaggca tcaaaaacgt gatttataca cttttattat ctgccctcat tagcttggct
     3541 ctgatttttc tctatttgca aaaaaatcaa gaaattcaac cgcttgcaca gcaattagag
     3601 ctggtaaaaa ccgatatatt aaatattgaa aataaaatta tcagcttgaa tagtaatcat
     3661 acaaacacct tgccctttgc cgagcctaaa aaaatagcac aactactggc aataatagat
     3721 aacttaccgc tcaaaaatgg gggaattgaa acgatacaaa tttatcttga aaccgatctc
     3781 tatttaaaaa taatcggtaa tttagataat caatctgatt ttcaaagtct agaatcttat
     3841 ttatatcagc aagatttatt tgaaaccaaa accgagcaaa ttaatgttaa tcataaaaat
     3901 gaaatccaat ttattttcac actgaaacat aaaggtaatt aatatgtttt ctatacattc
     3961 taaaattgaa gctgcatatt ccaatccaaa cagttcatta tttcagttta tttgctttat
     4021 ccgaaaatat cctaaagcat taccatttgg cattatgatg atattcatca ttccacctat
     4081 gattatgttg ataaaatcct atattgaggt taatcatatt ttaaaaaata tagaaaatga
     4141 caagattaac tttaatcatc aacaaaacaa atatgactca attatcaata aagctaaaaa
     4201 tcagaacagc caagagaata atttaaccga aataaacagc aacatacaaa tattagctga
     4261 aaaacaccaa ctaaccattg aaagtttaca atggaattta gaacaaggta aaagtattga
     4321 attgagtatt atcggcaata gccgatcttt atttg
//
LOCUS       DANLRW010000151         4309 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.152, whole genome shotgun sequence.
ACCESSION   DANLRW010000151 DANLRW010000000
VERSION     DANLRW010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4309
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.152"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            40..1974
                     /gene="cpdB"
                     /locus_tag="PXA71_002363"
     CDS             40..1974
                     /gene="cpdB"
                     /locus_tag="PXA71_002363"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005614893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HDL5106424.1"
                     /translation="MLVLGTQPSAFAQTAKNKAGLRVIATTDIHGFLTDFDYYKDAPT
                     EKFGFTRTASLIKQARAEVKNSVLVDNGDLIQGNPISDYQSTKGAKEGKPEPSIMALN
                     AMQYEVGTLGNHEFNYGLSYLDNAIKQAKFPIVNANIVKPGTDEPFFTPYVIQQKEIV
                     DEKGNKHTIKIGYIGFVPPQVMIWDKANLEGKVEARDIVKTAQKYVPIVKKEGADIVV
                     ALAHTGPSDEPYKEGAENCAFYLADVKGIDAVIFGHSHRLFPNKEFANSPNADIAKGT
                     MKGVPESMAGYWGNNISVIDLSLAENDGKWGVVDGRAELRPIYNTEEKKATVENHPEI
                     VALLKETHEATRQFVSQPIGKATDNMYSYLALVQDDPTIQIVNQAQKAYVENVVKGLP
                     ELAGLPILSAGAPFKAGGRKNDPTGYTEVDKGELTFRNAADLYLYPNTLVVVKATGAE
                     LKEWLECSAGMFKQIDVASDKPQYLLDWTGFRTYNYDVIDGVSYQFDITQPARYDGEC
                     KLINPNSHRVVNLTFDGKPVDPKQEFLIATNNYRAYGAKFPGTGDKHIVFAAPDENRQ
                     VLANYITTESKAHGQVSPKADNNWRIAPISSNAKLDIRFETSPTDKAKAFIKENAQYP
                     MEYIENDETGFAVYRIDLTK"
     gene            complement(2047..3525)
                     /locus_tag="PXA71_002364"
     CDS             complement(2047..3525)
                     /locus_tag="PXA71_002364"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDL5106425.1"
                     /translation="MDSILGKKINSTAIPSLLCDFYKTSHRIQYPEGSQFLYSTFTPR
                     SNIYAPFVTRVVSFGFQAFILKYLIHYFNDNFFSRSQHDVVSEYTQFISDTLNIEDSG
                     EHIAQLHQLGYLPIRIKAIPEGKSVAVKVPLMTIENTHSSFFWLTNYLETLINVSLWQ
                     PITSASIAFAYRKALAEFSEQTCDDNSHLPFQAHDFSMRGMSSLESAESSGAGHLTSF
                     LGTDTIPAISFVTAYYGSQHLIGTSIPASEHSVMSSHGVDELPTFRYLMAKYPNNMLS
                     IVADTTDFWHNITVNLPLLKQEILARPESAKLVIRPDSGDFFTIICGNNSSPVEHERK
                     GLIECLWDIFGGSINQKGYKVLNPHIGAIYGDGVTYDKMIRILEGLTAKGFASSNIVF
                     GVGAQTYQRNTRDTLGFAIKATSITINGVEKAIFKAPKTDNGLKKSQKGRVKVISYDH
                     YVDELTALDDFSDDLLEVVFENGKLVKSTNFDEIRQNIAQQF"
     gene            3828..3989
                     /locus_tag="PXA71_002365"
     CDS             3828..3989
                     /locus_tag="PXA71_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007525341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="HDL5106426.1"
                     /translation="MEKIENSSNLVLKLSLENQMLILESLEHPKEPNLVMLEALKKYS
                     LYVAKTSNK"
     gene            4007..4291
                     /locus_tag="PXA71_002366"
     CDS             4007..4291
                     /locus_tag="PXA71_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010128390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106427.1"
                     /translation="MANITLSHITPKHFFETVRLLKMQEHRIYIGVDSIEVRFKQKRF
                     ESKKETDKRLEQLEHFMLFLQEIINSDIPIDLDEFIYTYHRSVRRGFYRR"
BASE COUNT         1459 a          783 c          844 g         1223 t
ORIGIN      
        1 ttaaatagaa gaaaatttat ccagcttggt gcaactgcaa tgcttgtatt ggggacacaa
       61 ccgtctgcat ttgcacaaac agccaaaaat aaagctggct tgcgtgtcat cgccactacg
      121 gatattcacg gtttcttaac tgattttgat tattacaaag atgctccaac agaaaagttt
      181 ggttttaccc gtacggcaag cctaattaaa caagctagag cagaagttaa aaacagtgtg
      241 ttagtcgata atggtgactt aattcaaggt aatcctattt ctgactacca gtcaaccaaa
      301 ggtgcaaaag agggcaaacc tgaaccttcg attatggcat taaatgcgat gcaatatgaa
      361 gtcggaacgc tgggaaatca tgaatttaac tacggtttaa gctatttaga taatgctatt
      421 aagcaagcaa aattccctat tgtcaatgca aacattgtga agccggggac agatgaacca
      481 ttctttacac cttatgttat tcaacaaaaa gaaattgtag atgaaaaagg gaataagcat
      541 accattaaga ttggttatat cggttttgta ccaccacaag tgatgatttg ggataaagct
      601 aatcttgaag gaaaagttga agctcgagat attgtgaaga ccgcacaaaa atatgtgcct
      661 atagtaaaaa aagaaggggc agatattgtc gttgcattgg cacataccgg cccttcagac
      721 gaaccctata aagaaggcgc tgagaactgt gcgttttatc tagctgatgt aaaaggtatt
      781 gatgcagtta ttttcgggca ttcacatcgc ctgttcccaa ataaagaatt tgcaaattca
      841 ccaaatgccg atattgcaaa aggaacaatg aaaggcgtac cggaaagtat ggctggctac
      901 tggggaaata acatcagtgt gattgattta agcttggccg aaaacgatgg taaatggggc
      961 gttgtggacg gtagagcaga gttgcgtcca atttataata cggaagagaa aaaagcaacc
     1021 gttgagaacc accctgaaat cgttgcatta ttaaaagaaa cccatgaagc aacccgtcaa
     1081 tttgtgtctc aacctatcgg taaagcaact gataatatgt atagttacct tgcgttagtt
     1141 caagatgacc ctaccattca aattgtgaac caagctcaaa aagcgtatgt agaaaatgtg
     1201 gtaaaaggct tgccggagct tgcaggatta ccaattctaa gtgccggagc accgtttaaa
     1261 gccggtggac gtaaaaatga cccgacaggc tataccgaag tcgataaagg cgaattaact
     1321 ttccgcaatg cggcagactt atacctttac ccaaatacct tagtggtggt taaagcaaca
     1381 ggagcagaat taaaagagtg gttagagtgc agtgcaggaa tgttcaaaca aattgatgtc
     1441 gcttcggata aaccgcaata tttactggat tggacaggtt tccgcaccta taactacgat
     1501 gtaattgacg gtgtcagcta tcaatttgat ataacccaac cggctcgtta tgacggcgag
     1561 tgcaaattga tcaaccctaa ttcgcaccgt gtggtgaact taacctttga cggcaaaccg
     1621 gttgatccta aacaagaatt cttaattgcc accaacaatt accgtgctta tggagcaaaa
     1681 ttcccgggaa caggcgataa acatattgtg ttcgccgcac cggacgaaaa ccgccaagtg
     1741 ttagcgaatt atattaccac cgaaagtaaa gctcacgggc aggtaagtcc gaaagcggat
     1801 aacaactggc gtattgcacc aattagctca aatgcaaaat tggatattcg ttttgaaacc
     1861 tctccaacag ataaagctaa agctttcatt aaggaaaatg cacaatatcc gatggagtat
     1921 atcgaaaacg atgaaaccgg cttcgcagtt taccgtattg atttaaccaa ataatcagag
     1981 ctaaatacaa gcggtctaat ttgcaaaaaa attaacaaat ttgaccgctt gtttcattcc
     2041 atttttctaa aattgttgtg ctatattttg ccgaatttca tcaaaattgg tcgatttgac
     2101 caacttacca ttttcaaaaa ccacctctaa aagatcatct gaaaaatcat ccagtgcggt
     2161 tagctcgtca acataatgat cataagagat tacttttact cgcccttttt gcgatttttt
     2221 taagccgtta tcggttttag gagctttgaa aattgccttt tcgacaccgt taattgtaat
     2281 tgaagtcgct ttgattgcaa aacccagcgt atcacgagta ttgcgttgat aagtttgagc
     2341 cccaacgcca aacacaatat tgctggaagc aaaacctttt gccgttaagc cctctaaaat
     2401 ccgtatcatt ttatcataag tgacgccgtc accataaatt gccccaatat gcggattaag
     2461 cactttataa cctttttggt taatactacc accaaaaata tcccacaaac actcaatcag
     2521 acctttgcgt tcgtgttcaa cgggggagga attgttaccg caaataattg taaaaaaatc
     2581 accgctatca gggcggataa ccaattttgc tgattccggt cgagctaaaa tttcttgttt
     2641 taataatggc aaattaacgg tgatgttatg ccagaaatcg gttgtatctg ccacaataga
     2701 tagcatatta tttggatatt ttgccattaa ataacggaaa gtcggcagct catcaacacc
     2761 gtgtgaactc atcaccgaat gttctgatgc cggaatagat gtaccgatta aatgttgaga
     2821 accataatag gctgtcacga atgaaattgc aggaatggta tctgtgccta aaaatgaggt
     2881 tagatgtccg gcaccggagc tttctgctga ttctaaggaa ctcattccac gcatagagaa
     2941 atcgtgtgcc tggaagggta gatggctatt atcatcacag gtttgctctg aaaattcggc
     3001 tagagcctta cgataagcaa atgcaatgga agctgatgta ataggctgcc ataatgacac
     3061 attaatcagg gtttccaaat aattagtcag ccaaaaaaag cttgagtgag tgttttcaat
     3121 tgtcattaaa ggaactttca ctgcaacaga ttttccttct ggaatagctt taattctgat
     3181 aggtaagtaa ccgagctgat gcaattgtgc aatatgttcg ccagagtcct caatattcaa
     3241 tgtgtcagaa ataaattgag tatattcaga aacaacgtca tgttgtgagc gagaaaaaaa
     3301 attatcgtta aaataatgaa tcaagtattt taaaataaat gcctgaaagc caaatgatac
     3361 aacacgtgta acaaatggag cataaatatt actacgaggt gtgaatgtac tatataaaaa
     3421 ctgagaacct tcaggatatt gaattcgatg tgaagtttta taaaaatcac ataatagtga
     3481 tggtattgca gttgaattaa tttttttacc caaaatacta tccattttct taaagtcctt
     3541 atttaacttt taaggctaaa ggttatcata acttaccata aaatgaaaag tatttgttac
     3601 aaaatgagtg tatttacata ataacttata gattaatgct gttacataga tgtgatggcg
     3661 tattcaataa taccgccgat tgatgaaaaa cttatattat taattttcgc ataatgtcct
     3721 acaggttatg ttacaattcg agtgcagtac aatcgggctt gtcccactgc acgagaattt
     3781 acacataacc tgttgttatg cgaaagtcat ctaatgagat aattaaaatg gaaaaaatag
     3841 agaatagttc aaatcttgtt ctaaagcttt ctcttgaaaa tcaaatgcta attcttgaga
     3901 gcttagaaca tcctaaagag cctaatttag taatgctaga ggctttaaaa aagtattctt
     3961 tgtatgttgc taaaacaagt aataaatagc gttttcaagc taaactatgg caaatataac
     4021 cctttctcac atcaccccta aacatttttt tgaaactgtc cgactactca aaatgcagga
     4081 acatcgaatt tacatcggtg tagattcgat agaagttcgt tttaagcaaa agcgttttga
     4141 gtcaaaaaag gaaacagata agagactaga acagttagag cattttatgc tctttctaca
     4201 agaaatcatt aattcagata ttcctataga tttagatgag tttatataca cctatcacag
     4261 gtcagtaagg agaggttttt atcgacgtta gtgatgtgaa agaggagtg
//
LOCUS       DANLRW010000152         4266 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.153, whole genome shotgun sequence.
ACCESSION   DANLRW010000152 DANLRW010000000
VERSION     DANLRW010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4266
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.153"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..633
                     /locus_tag="PXA71_002367"
     CDS             <1..633
                     /locus_tag="PXA71_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Abi family protein"
                     /protein_id="HDL5106428.1"
                     /translation="ENPLAYEDYSLINQKFLKFQWKSNYAYANWLETTANKIKRSKDD
                     SIEWHRKNEKEIPFWVITETWDFGALSKFYSLLNGQHQRKIAKKFNVDENTLKNWLNE
                     INIVRNLSAHHSRIWNRKFSDIAIPKLDDPRWSKFKKMQQYFSNLSLDDKAKERIFGR
                     VAILWFLVSQTSTNYHWLDKFEDLLNDFPNLPNTKVELMGFNREILEKIK"
     gene            complement(697..1659)
                     /gene="hemH"
                     /locus_tag="PXA71_002368"
     CDS             complement(697..1659)
                     /gene="hemH"
                     /locus_tag="PXA71_002368"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDL5106429.1"
                     /translation="MNQPQQIGILLANLGTPDEPTPSAVKRYLKQFLSDPRVIDLPKF
                     KWQAILNCIILPRRSPKVAKLYQSVWSEEGSPLLAISRQQQRAVQRYFDAKGKNVVVE
                     LGMSYGNPSIESATDNLIKQGVERIIVLPLYPQYSSTTTASVFDAFANGLKAQRKIVP
                     FDFIHSYHNDPLYIQALANSIDVKPDELLLFSFHGIPKRYETEGDFYAKHCQETAELV
                     AEKLGLPREKWYLSFQSRFGDEEWLQPYTDQTLESFPQKGIKKVAVVCPGFSADCLET
                     LEEITEENRENFEHAGGESYRYIPALNASGDHIKALVKLIEAKI"
     gene            1896..2030
                     /gene="rpmH"
                     /locus_tag="PXA71_002369"
     CDS             1896..2030
                     /gene="rpmH"
                     /locus_tag="PXA71_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011508608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDL5106430.1"
                     /translation="MKRTFQPSVLKRARTHGFRARMATKNGRQVLARRRAKGRKSLSA
                     "
     gene            2066..2440
                     /gene="rnpA"
                     /locus_tag="PXA71_002370"
     CDS             2066..2440
                     /gene="rnpA"
                     /locus_tag="PXA71_002370"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDL5106431.1"
                     /translation="MKKLNFSRELRLLAPVQFKAVFEEPLRASTPQMTLLARENNLEN
                     PRLGLTVAKKHLKRAHDRNRIKRIVRESFRLKQHELPNFDFVFVAKGGIGKLDNATLF
                     ETLEKLWSRHIRLSKKPAQQNP"
     gene            2389..2712
                     /gene="yidD"
                     /locus_tag="PXA71_002371"
     CDS             2389..2712
                     /gene="yidD"
                     /locus_tag="PXA71_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDL5106432.1"
                     /translation="MVKTHSPEQKAGTTESINQPPRLSLLAKILLLPIYFYRYAISPL
                     IGPRCRFYPTCSTYAVEAIKIHGAIKGGYLAFKRILRCNPLSEGGEDPVPLCCKGNCK
                     HNDKK"
     gene            complement(2817..3158)
                     /gene="erpA"
                     /locus_tag="PXA71_002372"
     CDS             complement(2817..3158)
                     /gene="erpA"
                     /locus_tag="PXA71_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005706127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HDL5106433.1"
                     /translation="MSDIQIPLIFTDAAARKVKSLIEGEENPNLRLRVYITGGGCSGF
                     QYGFTFDDQVNEGDLTIENQSVGLVVDPMSLQYLIGGTVDYTEGLDGSRFVVNNPNAS
                     STCGCGSSFSI"
     gene            3307..>4266
                     /locus_tag="PXA71_002373"
     CDS             3307..>4266
                     /locus_tag="PXA71_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HDL5106434.1"
                     /translation="MADSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGI
                     YAFTAKEQWTSKATVIAPKLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRL
                     AQSQDTKNEFFITSNVYKTLAEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGRT
                     LSFSAETPMEAQDTLGKLVQFINSKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSV
                     NKSVQLENLNKAYETAQKAGIKEYSKAFNQSDASNIAAALSDTKISLSDSKLADSSYL
                     FMLGEKYLKAQIDVANEKGVVYPPRYYQIDYQLKQLEPLFEKTK"
BASE COUNT         1360 a          794 c          810 g         1302 t
ORIGIN      
        1 gaaaatcctt tggcttatga agattattct ctgattaatc aaaagttctt aaaatttcaa
       61 tggaaatcta attatgctta tgcaaattgg ctagaaacta cagctaataa aattaagcgt
      121 agtaaagatg attctattga atggcataga aaaaatgaga aggaaatccc tttttgggta
      181 attactgaaa cctgggattt tggtgcatta tctaagtttt actcattgtt aaatgggcaa
      241 caccaaagga aaattgctaa gaaatttaat gtagatgaga atacgttaaa gaattggttg
      301 aatgaaataa acattgtaag aaacctttct gctcaccatt ctcgtatttg gaacagaaaa
      361 tttagcgata ttgctattcc taagctagat gatcctcgtt ggtcgaaatt taaaaaaatg
      421 cagcagtatt tttcaaactt atcgctggat gacaaagcaa aggagagaat tttcggaagg
      481 gtagctattc tgtggttttt agttagtcaa accagcacta attaccattg gttagataag
      541 tttgaagatt tattaaatga cttccctaat ttaccgaata caaaagtaga actgatggga
      601 tttaacagag aaatattaga gaaaattaaa taaaataagt acattcctat agggtgtaga
      661 taaaaatggg cggatttatt atccgcccaa attatattat attttcgctt cgattaattt
      721 tactaatgcc ttgatatgat cgccactcgc atttaacgct ggaatgtagc gataagattc
      781 tccgccggca tgttcaaagt tctcgcggtt ttcttctgta atttcttcta aggtttccaa
      841 acaatctgct gaaaagcccg ggcaaacgac agccactttt tttatccctt tttgtgggaa
      901 gctttcaagg gtttgatcgg tataaggctg tagccactct tcatcaccaa aacgggactg
      961 gaaagacaaa taccattttt ctcttggcag acctagcttt tcagccacta attctgctgt
     1021 ttcttggcaa tgcttggcgt aaaaatcacc ttccgtttca taacgtttag gaatgccgtg
     1081 aaatgaaaac agtaataact cgtcaggttt aacatcaata gagttagcca acgcttgaat
     1141 ataaagcgga tcgttatgat agctgtgaat aaaatcaaac ggcacgattt tacgctgtgc
     1201 ttttaaaccg ttggcaaacg catcaaacac cgaagcggta gtagtgctac tgtattgcgg
     1261 ataaagcggt agcacaataa tccgctcaac cccctgcttg atgaggttat cggtcgcact
     1321 ttcaatactt ggattgccgt aagacattcc caattccacc accacatttt tgcctttggc
     1381 atcaaaatag cgttgtaccg ctcgttgttg ttgccgagaa atcgccaata acggtgagcc
     1441 ttcttcgctc catactgatt gatataattt tgccactttt ggcgaacgtc ttggcaaaat
     1501 gatgcagttt aggattgctt gccatttaaa ttttggtaga tcgatcacac gaggatcgct
     1561 taaaaattgc tttaaataac gcttcaccgc acttggcgtg ggttcatctg gcgtacctaa
     1621 attagccagc aaaataccta tttgttgggg ttgattcatt gttctatttc tcatcaatag
     1681 ttaatatttt ttcgattatg ccacaaacca atataaattt ctgcgattat aacaagcggt
     1741 cgtatttttc aaaaattttg caaacaaccc gagttgtgct tggattgttt cttgcttttt
     1801 attttaattg cctgtagaat tgcaactctt ttttatggtc cttgtttggc agaaaccatt
     1861 ttatgccaac tttttaaatt ttaggtagat aagcaatgaa acgtacattt caaccatcag
     1921 tattaaaacg tgctcgtact cacggtttcc gtgctcgtat ggctactaaa aacggtcgtc
     1981 aagtgttagc gcgtcgtcgt gctaaaggtc gtaaatcttt atctgcataa ttgcagaacc
     2041 agccaaaaca cctttctgat taagtgtgaa gaagctaaat ttctctcggg agctacgttt
     2101 gttagctccc gttcaattta aggcggtgtt tgaagagcca cttcgagcca gcacacccca
     2161 aatgactctt cttgctagag agaataatct agaaaatcct cgtctaggct taactgttgc
     2221 caaaaaacat ttaaaacggg ctcacgaccg taatcgcatt aagcggatag tgcgtgaaag
     2281 ttttcgcctc aagcaacacg aattgccgaa tttcgatttt gtatttgtgg caaaaggcgg
     2341 cattggcaaa ttagacaacg caacgctgtt tgaaacattg gaaaaactat ggtcaagaca
     2401 cattcgcctg agcaaaaagc cggcacaaca gaatccataa atcagccacc tcgtctcagc
     2461 ctattagcca aaattctatt gctaccgatt tatttctatc gctatgctat cagcccattg
     2521 attggcccac gttgccgatt ttacccaacc tgctccacct atgcggtcga agcgattaaa
     2581 atccacggag caattaaagg tgggtattta gcgtttaagc gtattctgcg ttgcaaccct
     2641 ttgagtgagg gaggcgaaga tcctgtccca ctttgttgta aaggcaactg caaacataat
     2701 gataaaaaat agcctaaact caataagtta ggctattttg tttaatacaa acggtcattt
     2761 ttagtaaaaa atttacttgt gagactgata ttgaataagg caataattcg agtgaattaa
     2821 atgctaaagg aagaaccaca accacaggtt gagcttgcat ttggattatt cacgacaaaa
     2881 cgtgagccgt ccagcccttc ggtataatcc accgtgccac caattaaata ttgtaggctc
     2941 atcgggtcaa ccaccaagcc aacgctttga ttctcaatgg taaggtctcc ctcattgact
     3001 tgatcatcaa aggtgaaccc atactggaat ccactacagc ccccacccgt aatatacaca
     3061 cgcaagcgaa gattcgggtt ctcttcgccc tcaattaagc tttttacttt acgagccgcc
     3121 gcatcagtaa agattaaagg aatttgaata tcgctcattt tgttttagat caaaatttta
     3181 ctgtgattgg atattatcta ataattacat aggaagtgca atcttaaaaa agagtaaatg
     3241 aatgcagtgg aaataagaaa attatgtata atgctgtaca gaaacatgca aattttagag
     3301 gaaactatgg cagattcagt aaaaagtcat gagcaaagct cggatgagat tgatttaatt
     3361 gagatttttc gtgctctatg ggataaaaaa tggtggattg ttataacaac attcattacc
     3421 acattacttg ctggtattta tgcatttact gcaaaagagc aatggacgtc taaggcaaca
     3481 gttattgccc ctaaattaac agagttaggt gagtatttaa atgttcgcag agaatatagt
     3541 cggattttgc gtgtagatcc tgttgatcca aatgcattgt ctgcgagttt gttcaacaat
     3601 tttaaccgat tagcacaatc tcaagatact aaaaatgaat tttttatcac ttccaatgtg
     3661 tataagacgt tagctgaagg aaaagatgag caggggcaac gcacagtttt atccaatttg
     3721 agtaatgaaa ataccagctt tattattcct gatgcaaaga aagatcctaa tgcaataggt
     3781 cgtacactat ctttttctgc agagacacct atggaggcgc aggacaccct tggtaagttg
     3841 gttcaattca ttaatagcaa agcatttgct gttgaattag aagattttct agtcgatttc
     3901 caaaatgtgc ttactgcatt acaatatgaa aaatcattaa ttcaggaaga tttatctgtg
     3961 aataagtcgg ttcagttgga aaacttaaat aaagcctatg aaactgcaca aaaagcaggt
     4021 attaaagaat attcaaaagc atttaatcaa tcagatgcat caaatattgc agcagcttta
     4081 agtgatacta aaatctccct ttctgattca aaattagcag atagttcata tttatttatg
     4141 ttaggggaaa aatacctaaa ggctcaaatt gatgtggcta atgagaaagg tgttgtttat
     4201 ccaccacgtt attatcaaat tgattaccaa cttaaacagc tagagccgtt atttgaaaaa
     4261 acaaag
//
LOCUS       DANLRW010000153         4264 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.154, whole genome shotgun sequence.
ACCESSION   DANLRW010000153 DANLRW010000000
VERSION     DANLRW010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4264)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4264)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4264
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.154"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..379
                     /locus_tag="PXA71_002374"
     CDS             <1..379
                     /locus_tag="PXA71_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106435.1"
                     /translation="QNKVKAELIRKSEKKAELCLNVAQAVLITNQKVQKDTFSMCGEF
                     STEIVFSDSKAYSLAVCGKVKGKDIIGNPIESDYIYQRATKDFYFNYNGKKSAYYDPQ
                     SDLARLQEVSDSMFNAMQNRYCK"
     gene            924..3419
                     /locus_tag="PXA71_002375"
     CDS             924..3419
                     /locus_tag="PXA71_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail length tape measure family protein"
                     /protein_id="HDL5106436.1"
                     /translation="MSQAVFYLNNFKELFMTVEVGGVVITADLEFENLLRDTQKVDKA
                     MDDIGKSTLKAEKGLKGLETQATKTAIAVNQATNKMKNIRGVAGQLGYQIQDISIMLQ
                     MGSNASTVIAQQGSQILSIFGPMGAVAGAILAISGAIGGALLPSLFDSTDATELLAAA
                     QKNLSEVVTQTESGVSALSAKIIKLAKVSEDAAKAKIAVAMSDAKIAIKAAGDSSQKA
                     FEQFDGFFGSFTNSSQSIRNAIDELKRYESKGKDVGAVIKELGGTYGGAIAEVNALDS
                     VTSEMSKTLGITQSEALGLIKLLAQLEQDKSPDNIKLLAIALSDLSDKNGWANEELNK
                     LTRTINDNSVSALDAETSVRLLESAIKDLQNAIQNSQGALDGNVAKMNQLADAAERKA
                     ATIGKTERETAKYAATLLATTDEAKKNLDSTLSRIDASYDQIEAYQAEQKALQDKKTA
                     DAKAAREAEAAAKKSAQAKKQVVEQLRQMATQYEIAVLRQKGMHLEAVKLEAGMRLGA
                     AATKEQREEAEKLAQSIYGATAASQNFNAIQAQASPVTALDQRHQQQLAQIEEYKILY
                     PQKIMEAEAARAAIEEQYRQQRMEAQWEEWKQASDGARMFGDAVDAVGSSATSTITGL
                     LNGTMSVRDAFASIANTILNSVVQSLVEMGMAQVKQMIMGQTAAKASMAAQMVQAKAL
                     AASFAPAASMVSLATQGANAIPAQAAITSTMSMAQVAAVTGRKLGGPVSARQMYRVGE
                     NNQPEIFKASNGMQYMIPGQSGRVFSNKQSQGQGGGESKTVAVIVNQTNHFSSDEASA
                     NQAAVAKALSNQIKASVRLELQSQMRAGGVLAR"
     gene            3423..3752
                     /locus_tag="PXA71_002376"
     CDS             3423..3752
                     /locus_tag="PXA71_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5106437.1"
                     /translation="MQTFNFKVEQDYTVQNEPSVVILKFADGYEQTAPKGLNHNLKKY
                     QGITVKANKAEAVKIQQFLNAHGGYKKFNWRDRTSDETVTVRCRSWSSTKLGAVIEFT
                     LNFDEVI"
     gene            3752..4222
                     /locus_tag="PXA71_002377"
     CDS             3752..4222
                     /locus_tag="PXA71_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5106438.1"
                     /translation="MPKAPPKKMASELIKLEQDALIELWEIDLTHIYSSSNPNQRGEI
                     FRFHNGVSQTQQNIWWQGNEYQAYPIAADGFEISGQGPSNRPTLTVSNLYGVVTVLVE
                     DFGQPVEAKVSSEETVDGNIQMTVELLKKMDQIADQRYRRNQLNDLRTGGTLSK"
BASE COUNT         1481 a          780 c          950 g         1053 t
ORIGIN      
        1 tcaaaataag gtgaaagcag agcttataag aaaatcagaa aaaaaagcag agttatgttt
       61 aaatgttgct caggctgtct taattactaa tcaaaaagta caaaaagata ctttctcaat
      121 gtgtggtgaa ttttcgacag agattgtctt ttctgactct aaagcatata gccttgcagt
      181 atgtggaaag gttaaaggta aagatattat cggaaatccg atagagagcg actatatata
      241 ccaaagagca actaaggatt tttactttaa ttataatggc aaaaaatcag cttattatga
      301 tcctcaatct gatcttgcaa ggcttcaaga ggtctcagac tctatgttta atgctatgca
      361 aaatagatat tgtaagtgat gcttgcattg gtttttaaat atttaactca aataatttat
      421 gtgtttttag tttaataggg cgatttatgg atgtaaaggt aattaacgtc ttactaatta
      481 ttcttttttc agcaattgta ataggtttat tcctttttca agaatcaaga ttaagagatc
      541 caaacaacca ttcagtgata tatttagagc agattcaaga aatgtgcagc ttagataaaa
      601 taggctcata ccagattgat tttgtacgac aaagtgggaa tgagtacaaa gagagtattc
      661 ttgttaatga ttttgagtta gcaataaaaa ccgtattatc cacgttaaga agggcaaaaa
      721 tagatagtgt gccagtaata tctaacacac ttatttatta tccaccgagc tttctacaac
      781 gcaagaggta gtcaagaagg aaagaaatta ggatcgataa ggattgcaaa aatttaatgt
      841 aacaaaaata tagattaaat tgtatttaac caatctattg ctagataaat tgtaaaaaaa
      901 tcacagaaat aaccgcttgt gctatgtcac aagcggtttt ttatttaaat aattttaagg
      961 aattgtttat gacggtcgaa gttggcggag ttgtaattac cgcagatcta gaatttgaaa
     1021 atctgctaag agatactcaa aaagttgata aagcgatgga tgacatcgga aaatcaacat
     1081 taaaagcaga aaaagggctg aaagggctag aaacgcaggc aaccaaaacg gcgatagcag
     1141 taaatcaagc cacaaacaaa atgaaaaata tccgtggagt agcaggtcaa cttggttatc
     1201 aaattcaaga catctcaata atgcttcaaa tgggttctaa cgcttcaacc gttattgctc
     1261 agcaagggtc gcaaatctta agtattttcg gtccaatggg agctgttgca ggggcgatct
     1321 tagctattag tggtgctatt ggtggggcgt tactccctag tttgtttgat tcaactgatg
     1381 caactgagct tttggcagca gctcaaaaaa atctcagcga agtagttact caaacggaaa
     1441 gtggtgtttc cgccctttct gcgaaaatca ttaaattagc aaaagtaagc gaagatgcag
     1501 caaaagcaaa aattgcagta gctatgagtg atgcaaaaat agctattaag gcagcagggg
     1561 attcatcaca aaaggcattt gagcaatttg acggcttttt tggatcgttt acaaattcaa
     1621 gtcaaagtat tcggaacgca attgacgaat taaaacgcta tgaatcaaaa ggtaaagatg
     1681 ttggtgccgt aataaaagaa cttggaggca catatggtgg tgcaattgcc gaagttaatg
     1741 cgctggattc tgtgacaagc gaaatgtcta aaacgcttgg tattactcaa tctgaggctc
     1801 ttggtttgat aaaactgttg gctcaattag agcaagacaa aagccctgat aatattaaat
     1861 tactcgcgat agctttatct gacttaagcg ataaaaatgg gtgggcgaac gaagagctaa
     1921 ataagctaac cagaacgata aacgataatt cagtatctgc tttagatgcc gaaacatcag
     1981 taagactctt agagtctgct ataaaagact tgcaaaatgc aatccaaaac tcccaaggtg
     2041 cattggatgg caatgtagca aaaatgaatc aacttgcaga tgcggcagaa agaaaagctg
     2101 caacgatagg caagactgag cgtgaaactg ctaaatatgc agctacgcta ttagctacaa
     2161 ccgatgaagc taaaaaaaat cttgattcca cattaagtag gattgacgca tcatacgatc
     2221 aaatcgaagc ctatcaagcc gaacaaaaag ccttacaaga taaaaagacc gcagatgcaa
     2281 aagctgccag agaagctgaa gcggctgcaa aaaaatccgc tcaagccaag aagcaagttg
     2341 tcgaacagtt gcgacaaatg gctacacagt acgagattgc tgttttgagg caaaagggaa
     2401 tgcatctcga agccgtaaaa ttagaagctg gtatgcgttt aggagctgcg gcaacaaaag
     2461 agcaacgaga agaagctgaa aaactagcac aaagtattta tggagcaacc gcagcaagtc
     2521 agaactttaa cgctatacaa gcccaagcat ctcctgttac tgcattagac caacgacatc
     2581 aacaacagct agctcagatc gaagaatata aaatcttgta tccacaaaaa ataatggaag
     2641 cagaagctgc gagagctgca atcgaagaac aataccgcca gcaacgaatg gaagctcaat
     2701 gggaggagtg gaagcaagcg agcgacgggg cgagaatgtt tggtgatgcg gttgatgctg
     2761 ttggttcaag tgcaacaagc acaattacgg ggctactaaa tggcacaatg tccgtgcgtg
     2821 atgctttcgc atcaattgca aatacgatct taaatagtgt agtacaaagc cttgtcgaaa
     2881 tgggtatggc tcaagttaag caaatgatta tggggcaaac tgctgccaag gcttctatgg
     2941 cggcgcaaat ggtgcaagct aaagcgttag ctgcttcatt tgcacccgcg gcctctatgg
     3001 tttctcttgc cacacagggg gcgaatgcta ttcccgctca agctgcgatc acgtcaacta
     3061 tgagtatggc tcaagtcgcc gcggtgacag gtcgtaaact tggcggccct gtatcagcta
     3121 gacagatgta tcgtgtcggc gagaacaatc agcccgaaat cttcaaagcg agcaatggga
     3181 tgcaatatat gatccccggt caaagcggtc gtgtattcag caacaagcag tcgcaaggtc
     3241 aaggtggagg cgaaagcaaa acagtagctg tcatcgtaaa tcaaaccaat cactttagca
     3301 gcgatgaagc cagtgcaaat caagcggctg ttgcaaaagc attgagcaat caaatcaagg
     3361 cttccgtgag attggaattg cagtcacaaa tgcgagctgg tggagttcta gcgaggtaat
     3421 caatgcaaac atttaatttc aaggttgagc aagactacac tgttcaaaat gagcccagtg
     3481 tcgtcatact aaaatttgcc gatggttacg agcaaaccgc tcccaaaggg ttaaaccaca
     3541 atctgaaaaa ataccaaggc attaccgtaa aagcgaacaa agcagaagcg gtgaagattc
     3601 agcaatttct caatgctcac ggtgggtata agaaattcaa ctggcgcgat agaacaagcg
     3661 atgagacggt aacggttcgt tgcagaagct ggagctccac taaattaggt gcagtcattg
     3721 agtttacact taatttcgat gaggtgattt aatgccaaaa gcccccccca aaaaaatggc
     3781 atcagagttg ataaaactcg aacaagatgc cctgattgag ctgtgggaga tagatctcac
     3841 tcacatctac tctagctcaa acccaaatca gcgcggagag atattccgct ttcacaatgg
     3901 cgtgagccaa acacaacaga acatctggtg gcaaggcaat gaataccaag catacccgat
     3961 tgccgccgat ggttttgaga tttcgggtca aggaccgtca aatcgtccaa cactcactgt
     4021 ctctaacctg tacggtgttg tcacggtatt agtagaagat ttcgggcaac ccgtagaggc
     4081 gaaagtcagc agtgaagaga ctgtagatgg caatatccaa atgacggtgg aactgctgaa
     4141 aaaaatggat caaatcgccg atcaacgcta ccgtagaaat cagttaaatg atttaagaac
     4201 aggtggaaca ttatctaaat aggtgaagta tgccaattag tatttctaac caaatgaaac
     4261 taga
//
LOCUS       DANLRW010000154         4259 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.155, whole genome shotgun sequence.
ACCESSION   DANLRW010000154 DANLRW010000000
VERSION     DANLRW010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4259
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.155"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(47..122)
                     /locus_tag="PXA71_002378"
     tRNA            complement(47..122)
                     /locus_tag="PXA71_002378"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(87..89),aa:Asn,seq:gtt)
     gene            complement(238..987)
                     /gene="moeB"
                     /locus_tag="PXA71_002379"
     CDS             complement(238..987)
                     /gene="moeB"
                     /locus_tag="PXA71_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HDL5106439.1"
                     /translation="MELTDHEMLRYNRQIILKSVDFDGQEKLKASRVLIVGLGGLGCA
                     ASQYLASAGVGHLTLVDFDLVSLSNLQRQILHTDATIGQPKVESAKARLAAINPNIQI
                     ETINQRCSDEQLAKLIANVDLVLDCTDNVTVRNQLNLQCFKQKRPLVSGSAIRFEGQV
                     SVFCYQEQEPCYECLSRLFGDATLSCVEAGVIAPIVGIIGSIQALEAIKVLLNIGRTL
                     SGKLLMIDGLHFSVREMALPKQNNCPVCTSY"
     gene            complement(1086..2315)
                     /gene="moeA"
                     /locus_tag="PXA71_002380"
     CDS             complement(1086..2315)
                     /gene="moeA"
                     /locus_tag="PXA71_002380"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDL5106440.1"
                     /translation="MALLALSDALDNMLARLSTPKLVEQLPLNECANRVLAEDIFSPI
                     NVPNFDNSAMDGYAVRISDLAQNLTLNVAGKAFAGNPFNGEIKAGECVRIMTGALVPK
                     GVDAVVMQEETTLNSDGSVTFNHIPKLGSNIRRIGEDVKQGALVLKKGSLLNVASLPL
                     LASLGIASVPVFVKLKVAILSTGDELTSVGEPLSEGKIYDTNRFAVRLMLEKLNCEIL
                     DFGILPDDPILFEQTFRQAQQQADVLITSGGVSVGEADFTKDVLEKLGEIGFWKIAMK
                     PGKPFAFGKLEQAWFFGLPGNPVSALVTFYQLAQPALAKLSGLSTDKIAKLTQNLTAC
                     SAGKLKKAVGRQDFQRGYYYANEKGELEVRAVGTQGSHIFSAFNESNCFIVLEAERGN
                     VDAGEKVTIQPFNSLMY"
     gene            complement(2337..2954)
                     /locus_tag="PXA71_002381"
     CDS             complement(2337..2954)
                     /locus_tag="PXA71_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006719828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HDL5106441.1"
                     /translation="MFDSLAVQFVVLWAVIDPIGSVPVYLAKTIGLPIEARRKIALNA
                     VLIAAGILIFFLIGGQVLLESMQIPLPAFQAAGGLVLLLFALTMIFGESKPEQEMRIS
                     SNLNELAVYPLAVPSIASPGAMMAIVLLTDNHRFHIGDQIITAGIMLLVLFITYLLLL
                     AANRIQHLIGNAGAAIISRVMGLILAAIAVNNLLIGVRDFFVQIS"
     gene            complement(3022..4233)
                     /locus_tag="PXA71_002382"
     CDS             complement(3022..4233)
                     /locus_tag="PXA71_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDL5106442.1"
                     /translation="MISRQMQSLLKRLVAQFPAVLVTGARQVGKSTLLQHIGEGYQYI
                     TFDDPMLLELAKQESRLFFLNHQGKLILDEVQYVPEIFALLKLEIDKKQQNGLFLLSG
                     SQAFELMQNVSETLAGRIAILKLQGLSLREILGVKFDQPFLPTTDYLLAREQELKSPE
                     NIWQLIHKGDMPRLYAQEVDWEIYYRSYVATYIERDVRQLTNIASTTDFTRFMVSIAS
                     RSGELLNYSNIAQEVGVSNETIKRWVAILQTSGIIYLLQPYHNNHLKRAIKTPKVYFL
                     DTGLMAYLTKWLTPETIAQGAKSWQFFETFVVSQIIKSFHNQGIEPPIYFYRDTNQKE
                     IDLIIEYDRTLYPIEIKVTASPTKKMAKSFDLLNSVSSEWKLGQGAIINQYPTKLYLS
                     ENLVALPVSYL"
BASE COUNT         1302 a          992 c          784 g         1181 t
ORIGIN      
        1 tataaaagga gacaaataaa acaagaacaa aagaaaaata aaatcttggc tcctcctgcg
       61 ggactcgaac ctgcgacata tggattaaca gtccaccgtt ctaccgactg aactaaggag
      121 gaattaacgg tgtaaataat aggctaaaac gttttagccg tcaaataaaa aaaataaact
      181 gtcgttcatt ttttacattt cttgacattt tttcgccaat aagtatgaga aaaatactta
      241 ataagaggta caaaccggac agttattttg cttaggtaat gccatttctc tgacagaaaa
      301 atgcaagccg tcaatcatta acaattttcc ggaaagagtt ctgccgatat taagtagcac
      361 tttaattgct tccaacgctt gaatactgcc tatgatgcca acaatcggag caatgacccc
      421 cgcttcaaca caacttaaag tcgcatcacc aaacaacctg cttaaacatt catagcacgg
      481 ttcttgttct tgataacaaa atacactcac ctgcccttca aatcgaattg ccgaaccgga
      541 aacaagcggt cgtttttgct taaaacattg caaatttaac tgattacgca cagtaacgtt
      601 atcggtacaa tccagcacta aatctacatt tgcaatcagc ttggctaact gctcatcgga
      661 acatcgctga ttgatagttt caatctgaat gttcggatta atcgccgcta atcgagcttt
      721 ggcagattcc acctttggct gcccgatagt cgcatcggta tgtaaaattt ggcgttgcag
      781 attagaaagt gagaccagat caaaatccac caaagtcaaa tgcccaacgc cggcagaagc
      841 taagtattgc gatgccgcac agcccaaacc acctaaaccg acaatcaaca ctcggctggc
      901 ttttaacttt tcctgcccgt caaaatccac gctttttagg ataatctggc gattataacg
      961 tagcatttcg tgatcggtaa gttccatttt tacacctaaa gagtaaacga tggcgcaagc
     1021 gtccacgctt gtgcctatat ttttattgct agcacaagcg tggacgcttg cgctatctta
     1081 attcattaat acatcagcga attaaacggc tgaatagtga ctttttcccc agcatcaaca
     1141 ttgcctcgtt ctgcttctag cacaataaaa cagttacttt cattaaaagc gctgaaaata
     1201 tgtgagcctt gcgtgccaac tgcacgaact tctaactcac ctttttcatt ggcatagtaa
     1261 tagccccgtt ggaaatcttg gcgaccgacc gcttttttca attttccggc actgcaagcg
     1321 gttagatttt gggttaattt tgcaatttta tctgtcgata aacccgaaag tttggctaac
     1381 gccggttgcg ctaattggta gaaagtcact aatgcagaga cagggttgcc cggcagccca
     1441 aaaaaccaag cctgttctaa tttaccgaat gcaaaaggct tgcccggctt catcgcaatt
     1501 ttccagaaac cgatttcgcc taatttttcc agtacatctt tggtaaaatc tgcctctccc
     1561 acagatacgc cgccactggt aatcaacaca tcggcttgct gttgggcttg cctgaaagtt
     1621 tgctcaaaca gaattgggtc atcaggcaaa atcccaaaat ctaaaatctc gcagttgagt
     1681 ttttccagca ttaaacgcac cgcaaaacgg ttggtgtcgt aaatttttcc ctcactcaaa
     1741 ggctcgccaa ctgaggttaa ttcatcgccg gttgaaagaa ttgccacttt taattttaca
     1801 aaaacaggca cagaagcaat accgagtgaa gctagcaacg gtaaactggc tacattcaat
     1861 aatgagcctt ttttcaagac caatgccccc tgtttaacat cttccccaat gcggcgaatg
     1921 ttactgccta attttggaat atggttaaag gttacagagc catcggaatt taacgtagtt
     1981 tcctcttgca ttacaacggc atcaacgccc tttggcacta atgctcccgt cataatccgc
     2041 acgcattcgc ctgcctttat ttcgccgtta aacgggttac cggcaaaggc tttaccagcc
     2101 acattcaagg ttaaattttg tgctaaatct gaaatacgaa ccgcgtagcc gtccatcgcc
     2161 gaattatcaa aattcggtac attaatcggg gaaaaaatat cctctgccaa cactcggtta
     2221 gcacactcat ttaacggaag ttgttccacc aatttaggtg tcgataaacg agcaagcata
     2281 ttatctaacg catcactcaa agccaaaagt gccataattt cctacctatt caacgtttag
     2341 ctaatttgta caaagaaatc ccgtacgcca atcaacagat tattcaccgc aatcgcagcc
     2401 agaattaacc ccatcactcg gctgataatc gcagcccctg cattaccaat aaggtgctga
     2461 atacggtttg ccgctaatag caacaaatag gtaataaaga gtaccaaaag cataatgccg
     2521 gcggtgataa tttgatcgcc gatatgaaaa cggtgattgt cggttaataa tacgattgcc
     2581 atcatcgccc cgggagaagc aatcgacggt acagctagcg gataaaccgc caattcattc
     2641 agattactgc tgatccgcat ttcttgctcg ggcttgcttt cgccaaaaat catcgttaaa
     2701 gcaaataaca acagcactaa gccgcctgcc gcttggaatg caggtaacgg aatctgcatt
     2761 gattctaaca gcacttgccc accgataagg aagaaaatca aaataccggc ggcaatcaag
     2821 accgcattta gtgcaatttt acgccgtgct tcaatcggca aaccaatggt ttttgccaaa
     2881 taaacaggaa cagaaccaat cgggtcgatc accgcccata aaaccacaaa ttgtaccgct
     2941 aatgaatcaa acatattctc tcctgttatc ttgataattt gcaaaatttt agcataaaac
     3001 aaccgcttgc acggcttttt cttacagata gctcaccggt aacgctacca aattttcact
     3061 taaataaagt ttggtcggat attggttaat aatcgctccc tgccctaatt tccattcact
     3121 agaaactgag tttagcaagt caaaactttt tgccattttt ttggttgggc ttgccgtgac
     3181 cttaatttct atcggataaa gcgtgcgatc atattcaata attaagtcga tctctttctg
     3241 gttagtatca cggtaaaaat aaatcggcgg ctcaattcct tgattatgaa aggattttat
     3301 aatttggctt accacaaagg tttcaaagaa ctgccagctt tttgcccctt gagcaatagt
     3361 ttcgggggta agccatttgg ttaaatacgc cattaacccg gtgtctagaa aatacacttt
     3421 tggggtctta attgcccgtt tcaaatgatt gttgtggtat ggctggagca aatagataat
     3481 gccggaagtc tgcaaaatgg cgacccaacg tttaatcgtt tcattcgata ctccaacttc
     3541 ttgagcaata ttactgtaat tgagtagctc accactacga gaggcaatag agaccataaa
     3601 acgggtaaaa tccgttgtgc tggcaatatt ggttaattgg cgaacatctc gctcaatgta
     3661 ggtcgctaca taagagcgat aataaatctc ccaatccacc tcttgtgcat ataaacgagg
     3721 catatcgcct ttatggataa gctgccagat gttctccggt gattttaatt cttgctcccg
     3781 agctaacaaa tagtcggttg tcggtaaaaa aggttgatcg aacttcaccc ctaaaatttc
     3841 acgcaacgaa agcccttgta attttaaaat agcaatacga ccggcaagtg tttcactcac
     3901 attctgcatt aattcaaagg cttgcgaccc cgaaagtaaa aacaaaccgt tttgctgttt
     3961 tttatcaatt tctaacttta ataacgcaaa aatttcaggc acatactgta cttcgtctaa
     4021 aataagcttg ccttgatggt ttaaaaaaaa caggcgagat tcttgtttag ccagctccag
     4081 caacattggg tcatcaaaag taatatattg atagccctca ccaatatgtt gtaacaatgt
     4141 cgatttacca acctgtcttg cccctgtcac taaaacggca ggaaattgcg ccacgagtcg
     4201 ttttaacagc gattgcattt gccgagaaat catttttcct ccaaaatagc ctaaatcaa
//
LOCUS       DANLRW010000155         4174 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.156, whole genome shotgun sequence.
ACCESSION   DANLRW010000155 DANLRW010000000
VERSION     DANLRW010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4174
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.156"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..1085)
                     /locus_tag="PXA71_002383"
     CDS             complement(<1..1085)
                     /locus_tag="PXA71_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDL5106443.1"
                     /translation="MGIMSKSISIFNHKGGIAKTTTAFNVGWSLANQGYQVLLVDLDS
                     QCNLTGLVLGYDQCKEDSDLALFYNNRHHLTMEGIVEALINGQSPDNYLSGNVGQITQ
                     TLNPNLFLLPGHLNVSELDSQISVSLKIAAGVPATRNIPGNLPTLIKKVAEQNNIDYI
                     LYDLSPNVGGLNEVILMSSDYFIVPTSPDFFCWQAVGSLAKNIRKWHNELKAFKELNG
                     FNQSSYAIKNKPQFLGTIQQRYRPRKGQPAKSFEKWIERIRNEVITNFVPVLKTIDCA
                     IDDTAIYAALKSTNSDLEPFDLAHIADFNSLIAISQELRVPVFSLTKEQIKNSGQFGH
                     ALNTMDESKENFDQEFQSLAERIIQLT"
     gene            complement(1150..1581)
                     /locus_tag="PXA71_002384"
     CDS             complement(1150..1581)
                     /locus_tag="PXA71_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106444.1"
                     /translation="MKKMAIVALSAFFSMNAFANNNVVYSCTTTDNQTLKVTKEGGNY
                     VYSHGNTTFKNPVKEALKNPASEIAGGSQFTTISLELRNAGKSYIVGHIEADPKSPFE
                     ASVQIQDIKTGNDITSFECRSDKPIRHNFDRKLMRKSGFAA"
     gene            complement(1585..3687)
                     /locus_tag="PXA71_002385"
     CDS             complement(1585..3687)
                     /locus_tag="PXA71_002385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrating conjugative element protein"
                     /protein_id="HDL5106445.1"
                     /translation="MKKAKSLKFLTACIMLTTMSGYANSNTVNVGNSISNFIENTTGY
                     RTGNLGVSGNNALTEYYPVLSDYMHYSIGGGSAISAPASRGRPNQYGIGIGWKSNLTC
                     GNFDIKLSIKNQLNGITEGFKDLYGNIIESATGAVASLPAMIIQRANPQLYDILSNGL
                     YQGKLDFNNFKTSCEAMSNQLADLAMDSKLAKMAGLHRAAEIAETEPDAMAAKKKMDK
                     KDAEKGIPWVGGEQRGGKNQKPMAIVADIVGAGYNLALGRGPLEKGDIPIASCDGMLC
                     TEWKNPSEAAAYASEVIGETFLDACETCEQSSSGAKAGKGIAHFIEQTTIEKATKLEA
                     ALNHLDSLTPEQLNSLSTSTVSVTKGVLEAIAASPDAALLGARLSQELAISKEMEKLL
                     LIRRAMLAGMREPNVIKSSLVEEAERNLKLLDREIEQVKLEMELQRSINGNTALAAIT
                     QQMNEQALAIDDNAMGDGNRRFANLSNQAGANNLNTSGIANSAQNAVGDRYIAIPKSD
                     GSGMSDFYGAYKASPTNIVSNVNVGSYTQIAQMNGNANEQATALIKQFEGYLSHGKWD
                     VNANRAGYGSDTYTTADGMVHRVQKGTYVSREDAERDLARRMPQFMNVARGNVGADVW
                     AKLTPQAQAALTSVSYNYGSLSKLESVQKAAAVSAQSGDMTALANSIRNLQGHNNGVN
                     ARRRNQEADYIINAPKGN"
     gene            complement(3714..3992)
                     /locus_tag="PXA71_002386"
     CDS             complement(3714..3992)
                     /locus_tag="PXA71_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HDL5106446.1"
                     /translation="MQAKTFYYLPLLLLSAMASASPANKPSDVTVKVFTSESYPKVFP
                     HSGDWATHSDSFSNTENYSWALWRPYSCCKKQGQVFLGHVDWKSTHTH"
BASE COUNT         1158 a          824 c          798 g         1394 t
ORIGIN      
        1 ttagtcagtt gtataattcg ttctgctaat gattgaaatt cttggtcaaa attttcttta
       61 ctttcatcca ttgtattcaa agcatgtcca aattgacctg agtttttaat ttgctctttt
      121 gttaaggaaa atacgggaac tcgtagctct tggctaatag caatcaacga attaaagtcg
      181 gctatgtgag ccaaatcaaa tggctctaag tcagaattcg ttgatttaag agcagcataa
      241 atagctgtat catcaatagc acaatcaata gtttttaata ccggcacaaa attcgtaatg
      301 acttcatttc taattcgctc aatccatttt tcaaatgatt tggccggttg cccttttctt
      361 ggtcgataac gttgctgaat agtacctaaa aattgtggct tatttttaat tgcataagat
      421 gattggttaa aaccattaag ttctttaaat gcttttaact cattatgcca tttgcgaata
      481 tttttagcga gcgaaccaac tgcttgccag cagaaaaaat caggtgatgt aggtacaata
      541 aagtaatcac tagacattag gataacttca tttaatccac ccacatttgg actaagatca
      601 tagagtatgt aatcaatatt gttttgttca gctactttct taattaaagt cggaagattg
      661 ccgggtatat ttcttgttgc tggaacaccg gcagcaattt ttaatgatac actaatttgc
      721 gaatcaagct cggaaacatt aaggtgacca ggtaacaaga acagatttgg attcagggtt
      781 tgagtgattt ggccaacatt tccactaagg tagttatcag ggctttgtcc gtttatcagt
      841 gcttcaacaa taccttccat agtcaaatga tgtctattat tgtaaaaaag cgctaaatca
      901 ctatcttctt tgcattgatc gtagccaagt accagaccgg ttaggttaca ttgtgaatcc
      961 aaatcgacta acaatacttg atagccttga tttgctaaac tccaaccaac attaaatgca
     1021 gttgtagttt tagcaatacc tcctttatga ttaaaaatac tgatagactt actcataata
     1081 cccataattc tatgaaataa ttaacccacc gaactcattt gagaatggtg ggttaatgct
     1141 ttgctttagc taggctgcaa atccagattt tctcatcagt ttgcgatcaa agttgtggcg
     1201 aataggctta tcggaacgac attcaaatga tgtaatatca tttcctgttt taatatcctg
     1261 aatctgaaca cttgcttcaa aaggtgattt agggtctgct tctatatgac ctacaatata
     1321 agattttcct gcatttctta attcgagcga gattgttgtg aattgtgaac cacctgcaat
     1381 ctccgatgcc ggatttttga gagcttcttt tacaggattt ttgaatgtgg tattaccgtg
     1441 agagtacaca tagtttcccc cctctttggt aacttttaac gtttggttat ctgtagttgt
     1501 gcaagaatac actacattgt tatttgcaaa agcattcatt gagaaaaatg ctgataaagc
     1561 tacaattgcc atttttttca taggttagtt tccttttggt gcgttgataa tgtaatcggc
     1621 ttcctggtta cgtcttcgag cattaacacc attattatgc ccttgtaaat ttcggattga
     1681 gttagctaaa gccgtcatat cacctgattg tgcggagacg gcagccgctt tttgaacact
     1741 ttctagttta gataatgacc catagttgta tgataccgac gttaatgctg cttgtgcttg
     1801 aggagtcaat ttagcccaaa cgtcggcacc aacattaccc cttgcaacat tcataaattg
     1861 aggcattctt cgtgctaaat cacgttcagc atcttcccgg cttacataag tgcctttttg
     1921 aacccgatga accataccat ctgcagtagt ataggtgtca gagccatatc cggcacggtt
     1981 agcatttaca tcccatttcc cgtggcttaa atatccttca aactgtttga taagagccgt
     2041 tgcttgttca ttcgcattgc cgttcatttg ggcaatttgg gtatagctcc ctacattcac
     2101 gttactgaca atgtttgttg gggaggcttt atatgctcca taaaaatcac tcatgcctga
     2161 gccgtctgat ttggggatag caatatatct atcgccaacg gcattttgtg cagaattagc
     2221 aatgccactg gtgttgagat tatttgctcc ggcttgattg cttaaattgg caaagcgacg
     2281 gtttccatca cccatcgcat tatcatcaat agcaagagct tgttcgttca tctgttgagt
     2341 aattgcagct aatgctgtat taccgttgat tgaacgttgc agttccattt cgagtttaac
     2401 ttgctcaatt tctctgtcaa gtaatttgag gtttctttct gcttcttcta ctaaggaaga
     2461 ttttataaca tttggctcac gcataccggc taacattgct cggcgaatca gtagcaattt
     2521 ttccatttct ttagaaatag ctaattcttg cgataacctt gcacccagca aggctgcatc
     2581 cggcgaagca gcaatggctt ctaatacgcc ttttgttaca ctgaccgttg atgtactcag
     2641 tgaattgagt tgttccggcg ttaaactatc taagtgattc agtgccgctt ctagctttgt
     2701 ggctttttca atagttgttt gttcaataaa atgggcgatt cctttcccgg ctttagctcc
     2761 acttgaactt tgttcacaag tttcacaggc atcaaggaat gtttcaccaa tcacttcact
     2821 tgcataggca gcagcctcgc ttggattttt ccattccgta caaagcatac catcacagct
     2881 tgcaataggt atatctcctt tttctaatgg tcctcgtcct aaagcgaggt tatatccggc
     2941 tccaacaatg tcagcaacga tagccattgg tttttgattt ttaccaccac gttgttcgcc
     3001 acctacccaa gggatgcctt tttcagcatc ttttttatcc attttcttct tggctgccat
     3061 tgcatcaggc tctgtttcag caatttcagc ggctcggtgt aatccggcca tctttgctaa
     3121 tttactgtcc attgctaaat cagcaagttg gttagacatg gcttcgcaac tggttttgaa
     3181 gttgttgaag tcaagttttc cttgatatag accattagaa agaatgtcat acagttgagg
     3241 atttgctcgt tggataatca tcgccgggag gctggcaact gcaccggttg ctgactcaat
     3301 aatattgcca taaagatctt taaaaccttc agtaatacca ttaagctggt ttttaatgga
     3361 aagtttaata tcaaagttgc cacaagttaa attcgatttc cagccaatgc caatcccata
     3421 ttgatttggt ctgccacggg aagctggtgc ggaaatggca ctacctcctc caatggagta
     3481 gtgcatataa tcagaaagga cagggtagta ttccgtgaga gcgttattac cagaaacgcc
     3541 tagattacca gtcctatagc ctgttgtatt ttcaataaaa ttactaatgc tattgccaac
     3601 attaacggta ttactatttg cgtatccgct catggttgtg agcattatac aagcggttag
     3661 aaatttgaga ctttttgctt ttttcattta tttatcctaa tagtgctgat aatttaatga
     3721 gtatgtgtac ttttccagtc cacatgacct aaaaaaactt gcccttgttt tttacagcaa
     3781 gaatagggcc tccataatgc ccagctgtaa ttctcagtat tggagaaact atctgaatgg
     3841 gtagcccaat caccactgtg cggaaagact ttagggtagg attcggaagt aaatacctta
     3901 actgttacat ctgagggttt attagcagga ctagcacttg ccatagctga aagcagtagt
     3961 agtggtaaat agtaaaatgt cttagcttgc ataaatgctc cacaaataga gtaattcacg
     4021 tttaccttaa aagatgattt ggttagaaga aatcggaaat tgttttttgg ttttggagag
     4081 tttttgttag tatataagtt aatgtaacaa gggagagtgg atgtatgagc aatagaatac
     4141 ctaaagcctg ttatgcttac ccaaaatcgc cgaa
//
LOCUS       DANLRW010000156         4143 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.157, whole genome shotgun sequence.
ACCESSION   DANLRW010000156 DANLRW010000000
VERSION     DANLRW010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4143)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4143)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.157"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..386
                     /locus_tag="PXA71_002387"
     CDS             <1..386
                     /locus_tag="PXA71_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106447.1"
                     /translation="KRISLHLKILDFDKGRNTYLAPADLFILDEHLNEFILGNGGDEI
                     EKISKNNKTQFSSTIRENQINFIRALLYMDYGIETPQEVKNAINSGELGRKIEKFRRE
                     NPNIENDKNFKFPTSVTLSNWYSKA"
     gene            464..715
                     /locus_tag="PXA71_002388"
     CDS             464..715
                     /locus_tag="PXA71_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5106448.1"
                     /translation="MQLQKTISTFTQPNHRGIYVMTYSEQSYLNVKDVCEMLQLNRST
                     IYRQIKQGIFPKPTKIGKSSRWKFADIKAFLEPKPQEAN"
     gene            715..1095
                     /locus_tag="PXA71_002389"
     CDS             715..1095
                     /locus_tag="PXA71_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5106449.1"
                     /translation="MAGLSIICPFCGNTARIRGSSRPSLLSYQAQLTCSNCGQLKADF
                     VGQLINIKRAVFIECDEANQWDKPENELIKEGKIQGKDNAQRLKELRGSQQDLFAKVP
                     GQLPPEKITPAEKIAKRANLSKTH"
     gene            1406..2467
                     /locus_tag="PXA71_002390"
     CDS             1406..2467
                     /locus_tag="PXA71_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HDL5106450.1"
                     /translation="MKDLSPNQKQYTPFSAIMQKNLMDLLTKSARSPYSFSTVAKSTA
                     GRENPELHNTANSSTPLTRAIFIRSLHTPKERRNKACSSMVACSGQGSPLAVFGSPFV
                     AVFSPRYTLSPCTVRSVADSPLKLTNGLQKMNPSQITGKNRLNSFLFNNNQNDYSLLF
                     TNAKQSTPISAKISKNQDLCLTTLNRSPYASRAFAKSKAECGNSKEHQANNSTPLTRA
                     FFVRSSRTPKECQNKACSSMVACSGQGFALDCLPDVAVFHPVTRYRPTLWKMLAIAPK
                     NQHQELSKMKAFAYSFLCAIRTPETDTYQETVVRIISDSEQNARFQLTADYRLLLPRP
                     VAKIRLNSTAYTVKGGIYA"
     gene            2460..2624
                     /locus_tag="PXA71_002391"
     CDS             2460..2624
                     /locus_tag="PXA71_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106451.1"
                     /translation="MLNYSDIEQIRYFMDQAEEALDNNEEFKAVAELNTAQQFILALL
                     MNYEQGGENE"
     gene            2617..3252
                     /locus_tag="PXA71_002392"
     CDS             2617..3252
                     /locus_tag="PXA71_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106452.1"
                     /translation="MNNTTGQATQRNWQEIIANLQRLSESGESTIEIAKRYEAFSKTA
                     EQIQALVNNNGSEAEKEAFFAPVERFYLGLLETETRLKDAIAKDEENAQKLKEQKAAR
                     EAEQKRWDNLPFYAKDKFSDLICIESRETLEDKFFAISCMFDALKAVPNLLEIGLREE
                     GKDSVIDRLAEMSKLYLLFVDEQFSLLANEIQSGKYGKLDLNGSQNKGDLC"
     gene            3246..3464
                     /locus_tag="PXA71_002393"
     CDS             3246..3464
                     /locus_tag="PXA71_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106453.1"
                     /translation="MLTHRITLPDGTEIEFFAETDKETFAEIQRDLEGLKLPTFAEFV
                     AQERKKHRAKQAVKKARKIAKLARRKNR"
     gene            3606..4091
                     /locus_tag="PXA71_002394"
     CDS             3606..4091
                     /locus_tag="PXA71_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106454.1"
                     /translation="METALQLAQHLTGWTEEENSQAILKNFLDWKETFGEKTREETKI
                     VETLLDWINENEASFIEYPFNQEQRTPPKVAGYRILANNSTKTNEYFFIYPKQFKETL
                     AEFPLLMACTKLHEAGILHKPPRPEKGYEFQYTIAPKITGGSKKRAYKIVPIALEEEN
                     E"
BASE COUNT         1502 a          860 c          789 g          992 t
ORIGIN      
        1 aaaaaagaat aagtttacat ctaaaaatac tggattttga caaaggcaga aatacttatt
       61 tagcacctgc agatttattt attcttgatg aacatctaaa tgagttcata ttaggtaacg
      121 gcggagatga aatagaaaaa atatcaaaga ataacaaaac tcaattcagc tcaacaatac
      181 gagaaaacca aatcaatttt attagagcct tgctttatat ggattatggg atagaaacgc
      241 ctcaagaagt aaaaaacgcc attaattcag gggaactagg cagaaaaata gagaaattta
      301 ggagagaaaa ccccaatata gagaacgata aaaatttcaa attccctaca agtgtaaccc
      361 ttagcaactg gtattcaaaa gcctaaaata ttggaaattt ccgaatctac tttggaaatt
      421 tccaaacttc taaaacctac tcacctcaca atctccccca acaatgcaac tacaaaagac
      481 aataagcaca ttcacgcaac caaaccacag ggggatttat gtaatgacct attcagaaca
      541 aagctattta aacgtgaaag atgtatgcga aatgctacaa ctcaaccgct caactattta
      601 tcgacaaatt aagcaaggga ttttccctaa gccaactaag atcggaaaat caagccggtg
      661 gaaatttgcc gacatcaaag catttttaga gccaaaacca caggaggcga actaatggca
      721 gggctttcta ttatttgccc gttttgtggc aataccgcac gaattagagg cagttctcgc
      781 cctagccttt taagttatca agcacagcta acttgttcaa attgcggaca attaaaagcc
      841 gactttgtag ggcagctaat caacatcaaa cgggccgtat ttattgagtg tgatgaagca
      901 aatcaatggg ataaacccga aaatgaacta atcaaggagg gaaaaattca aggcaaagac
      961 aatgctcaac gcctcaaaga actaagaggc tcacagcaag atttatttgc aaaggtgccg
     1021 gggcaactac cgcccgagaa gatcactccg gcggagaaaa tcgccaagcg ggcaaacctt
     1081 tcaaaaacgc attaaacagg gggataaatg gcaacaaaaa agccccgcaa ggcaaaccat
     1141 acggagctat taaaatcgca taatgcgaaa gatatgcaaa gaaattaaag caggcttgac
     1201 gatttctgaa ggtgttagat tctttctaaa gtctttaggg ataggtttat ttctagcatt
     1261 gtttttttat tttttgccgt atttagcaga atttataatc gccgtaaaaa aacaactagc
     1321 aaaaaaatcg gcttactttc aatgataaaa gcaagccgaa atgacaatcc aaatttttaa
     1381 ctttaaataa agagtacaag aagaaatgaa agatttatct ccaaatcaga aacaatatac
     1441 gccattttcg gctataatgc aaaaaaattt aatggattta ttgacaaaat ccgcccgttc
     1501 gccttattct ttctctaccg ttgcaaaatc aacggcaggg cgtgagaacc ctgaactaca
     1561 taatacggcg aacagtagca cgcctttaac ccgtgctatt tttattcgta gcttacacac
     1621 acctaaagaa cgccgaaata aggcgtgttc gtctatggta gcgtgtagcg ggcaaggttc
     1681 gcccttggct gtttttggtt cgccgtttgt agcagttttc tcaccccgtt acacgctatc
     1741 gccctgcacc gtgagaagtg tagccgatag tcctttaaaa ttaacaaacg gactacaaaa
     1801 aatgaaccct agccaaatta caggcaaaaa ccgcctaaac tcttttctat ttaacaataa
     1861 tcaaaatgat tattcgctat tatttactaa tgcaaaacaa tcaaccccga tttctgctaa
     1921 aataagcaaa aatcaagatt tatgcttgac aaccctcaat cgttcgcctt atgctagccg
     1981 tgcttttgca aaatcaaaag ccgagtgtgg aaactcgaaa gaacatcagg cgaacaatag
     2041 cacgccttta actcgtgctt tttttgttcg tagctcacgc acacccaaag aatgccaaaa
     2101 taaggcgtgt tcgtctatgg tagcgtgtag cgggcaaggt ttcgcccttg actgcttacc
     2161 tgatgttgca gttttccacc ccgttacacg ctatcgccct acattgtgga aaatgttagc
     2221 gatagcccct aaaaatcaac atcaggagct atcaaaaatg aaagcattcg cttattcatt
     2281 cctttgtgct attcgcacac ccgaaacaga tacttatcaa gaaaccgtag tacgcattat
     2341 ttcagacagc gaacaaaacg cccgttttca gcttacagcc gattatcgct tactactccc
     2401 ccgccctgtt gcaaaaatcc gcctaaattc taccgcttac acggtgaaag gggggattta
     2461 tgcttaatta ttccgatatt gaacaaatcc gctattttat ggatcaagcc gaagaggctt
     2521 tagacaataa tgaagagttc aaagccgtag cagaacttaa cacagcacaa caatttattc
     2581 tggctttatt aatgaactac gaacaagggg gtgaaaatga ataatacaac aggacaagct
     2641 acgcaaagaa actggcaaga aattatcgct aatttgcaga gactcagcga atccggggaa
     2701 agcacaatcg aaatcgctaa acgctatgag gcattttcta aaaccgccga gcaaatccaa
     2761 gccctagtga ataacaacgg cagcgaagcc gaaaaagagg cgttttttgc ccctgttgag
     2821 cgtttttatc ttggcttact agaaaccgaa acacgcttaa aagatgccat agccaaagac
     2881 gaagaaaacg cccaaaaatt gaaagagcaa aaagcagcta gagaggcaga gcaaaaaaga
     2941 tgggacaacc tacctttcta cgccaaagac aaattcagtg atttaatttg cattgaaagc
     3001 cgagaaacgc ttgaagataa attctttgcg atctcttgta tgttcgatgc cctaaaagcc
     3061 gtacctaatc tattagaaat aggcttgcgt gaagaaggca aagacagtgt tatagaccga
     3121 ttagccgaaa tgagcaaact ctatttactg tttgtagatg agcaattttc actactggca
     3181 aacgaaattc aaagcggtaa atatggcaag ttagacctaa acggctcaca gaataagggg
     3241 gatttatgct aacgcaccgc attacactcc ctgacggcac agaaattgaa ttttttgcag
     3301 aaaccgacaa agaaacattt gcagaaattc aaagggactt agagggcttg aaattgccaa
     3361 cctttgccga gtttgttgcc caagagcgga aaaaacaccg agcaaaacaa gcggtcaaaa
     3421 aagcccgaaa aattgcaaaa ttagcaagac ggaaaaaccg ctagcaccta tcaaaaagac
     3481 ttattattgc agaaaatcac gctttaataa aaacgaccta taaagcaatc cgcaagaaat
     3541 ggttaagttt aactgaaaat atgagcggac aggttcagcg ggtagcgtgc gatagattcg
     3601 caataatgga aaccgccttg cagttagccc aacatttaac aggctggaca gaggaagaga
     3661 acagccaagc gattttaaaa aacttcctag actggaaaga aactttcggc gaaaaaacaa
     3721 gagaagaaac taaaatagta gaaaccttgc tagattggat aaatgaaaat gaggcgagtt
     3781 ttatcgagta cccattcaac caagagcaaa gaacaccgcc taaagttgcc ggctatagaa
     3841 tacttgcgaa taacagcact aaaacaaatg agtacttttt catttaccct aagcaattta
     3901 aagaaacgct ggcagaattt ccgctattga tggcttgcac caagttacac gaggcaggga
     3961 ttttacataa gccaccacgc ccagaaaaag gctatgaatt tcagtacaca atagccccta
     4021 aaataacagg agggagcaaa aaaagagctt ataaaatcgt accgatagca ttggaagaag
     4081 aaaacgagta attacagcaa aagcaagagt ttcaattctt gcttttttta tacttcaaac
     4141 aaa
//
LOCUS       DANLRW010000157         4083 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.158, whole genome shotgun sequence.
ACCESSION   DANLRW010000157 DANLRW010000000
VERSION     DANLRW010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4083
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.158"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            92..1621
                     /gene="mepM"
                     /locus_tag="PXA71_002395"
     CDS             92..1621
                     /gene="mepM"
                     /locus_tag="PXA71_002395"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HDL5106455.1"
                     /translation="MQHVILARDRKRHKKHFKIAVFLLAVFSLFVDIVLALKDQSSIN
                     NTSSQEDIIAIDKQEKYQSINTNLAENNTLHQEQHSSFINYVTDLLTQSALVIEHDDE
                     IVDDQTATSYEDELVGQDDEVEEGIETVENQVPGEKLPEEAEKALEDLLDVADQALRI
                     QNQFSYTVARGDKLKDVLEQSGLTASVAKNLIKQHSALAQLEPGQQFYWVLDNDGELE
                     YMNWLVSEKEERVYERKENGKFSFQRFEKKGEWKLDVVRGTIQNSFAVSLKAVGLSDR
                     QINQLAVGLQSQIATNKLKKGDRFAILIKREYIDGKVTDLGNVEGIHVISSKKSYYAI
                     QADNGRYYSRYGETLSGGFARHPLLFAARVTSSFNPKRRHPITGRISPHKGVDYGVPI
                     GTPIIAPSDGVVEHVAYQARGAGRYIRIKHGHITTVYMHLSKTLVKPGQSVKKGERIA
                     LSGNTGGSTGPHLHYEFHINGRPVNPITVKLPGSNSGMGNKERQAFLNKAKNVESRLK
                     M"
     gene            1631..2314
                     /gene="dsbC"
                     /locus_tag="PXA71_002396"
     CDS             1631..2314
                     /gene="dsbC"
                     /locus_tag="PXA71_002396"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HDL5106456.1"
                     /translation="MKKNLITLGLMCLSTITFASDAKLKSQLEKIGATDVKISDSPLT
                     GFKMATSNEGVVYISQDGRYVIQGKVFELKNGKAIDITNQGLLAELNSYTNEMIVYPA
                     KNEKHVITVFMDITCHYCHLLHTKIKEYNDLGITIRYLAFPRGGMNTQTAKQMEAIWT
                     SADKVKALNDAEDGKLPTQIKTPDIVKKHYQLGIKFGVTGTPNMVTSEGELIGGYVEP
                     KELAKMLSE"
     gene            2399..>4083
                     /gene="recJ"
                     /locus_tag="PXA71_002397"
     CDS             2399..>4083
                     /gene="recJ"
                     /locus_tag="PXA71_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005616987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDL5106457.1"
                     /translation="MEKIIKRRPLLTTEIVSTNPLLNRIYQSRGIKNTQELEHNLKNL
                     HRPQQLANIEQAVDLLLQAFREKSRIIIVGDFDADGATSTSLALIALRQLGFDKVDYL
                     IPDRFSQGYGLSVAVAEMVLAKGADLVLTVDNGISSTEGIALLKSHQIQVLVTDHHLP
                     PESLPNADALVNPNLAFCEFPSKSLAGVGVIFYVMMALRSRMREQHLFENKPEPNFAE
                     LLDLVALGTVADVVPLDQNNRILVHQGLQRIRSGHCRLGIKALAEVGKRDLSTLQAAD
                     LGFAIAPRLNAAGRLENMSLGVELLICENMELARRLALDLDSLNQTRKEFEQEMKAEA
                     LSICANLPSLAQSEQAHGIVLYQADWHQGVIGILASRIKDQFNRPVIAFAQESEESEY
                     LKGSARSINGVHMRDLLEHIDMRHPDLIEKFGGHAMAAGLTIHQSKLDLFKQIFDQSI
                     NAIIEPEQLQGIIYTDGELNALEFTLANAEMIRQGGPWGQHFPEPSFEGEFSILQQKL
                     LAGKHLKLMLQSEKGQLFDAIWFNVDVRAFPDLSIKKARLVYRLDINEFRGEKS"
BASE COUNT         1374 a          650 c          890 g         1169 t
ORIGIN      
        1 acaatagatt aaatgaattt tttcttggta aaatagtcta ctcagaaaaa tatgtaaatt
       61 ttagtaaatt ttaaaaatag cgggatatat tttgcaacat gtaattttag cgagagatcg
      121 taagcgacat aaaaaacatt ttaagattgc ggttttctta ttagcggtat ttagtctatt
      181 tgttgatatt gttctcgcac taaaagatca atcctcaatc aataatacat cttcacagga
      241 agatattatt gccattgata aacaggaaaa atatcagagt atcaacacta atttggcgga
      301 aaataatact ctccatcagg agcaacattc cagttttatt aattatgtga ctgatttact
      361 gactcagtcg gcattagtaa tcgaacatga cgacgaaatt gttgatgatc aaacagcgac
      421 ttcttatgaa gatgaattag ttgggcaaga cgatgaagta gaagaaggga ttgaaacggt
      481 tgaaaatcaa gttcctgggg aaaaactccc agaagaagct gaaaaggcat tagaagattt
      541 acttgatgtg gctgatcaag cactacgaat tcaaaaccaa ttcagttata ccgtagctcg
      601 aggtgataaa cttaaagatg tattagagca atcaggctta actgcatccg ttgcgaaaaa
      661 tttaattaag caacattcgg cattagcaca attagaaccg ggtcaacaat tttattgggt
      721 attagataat gacggtgaat tagaatatat gaactggctg gtttccgaaa aagaggaacg
      781 ggtttatgag cgaaaagaaa atggtaaatt ttcttttcaa agatttgaga aaaaagggga
      841 atggaagtta gatgttgtaa gaggaactat tcagaatagt tttgcggtta gcttaaaagc
      901 cgttggctta tcagaccgcc aaattaacca gctagcggtt ggattgcagt cacaaattgc
      961 gacgaataaa ttaaaaaaag gggataggtt tgcaattctg attaagcggg aatatattga
     1021 cggcaaagta acggatttag gaaatgtgga aggaatccat gtaattagca gtaaaaaaag
     1081 ttattatgct attcaagcag ataatggacg ctattatagt cgatatggtg aaacattaag
     1141 tggaggattt gctcgtcatc cattattatt tgcagcaaga gtaacttctt ctttcaaccc
     1201 caaacgcaga caccctatta cagggagaat tagtccgcat aaaggggttg actatggcgt
     1261 gccaataggt actccgatca tcgcaccaag tgatggtgtc gtagagcatg tggcatatca
     1321 agcccgtgga gcaggacgtt atattcggat aaaacacgga catattacga ctgtttatat
     1381 gcacctcagc aaaacgttgg taaaaccagg gcagagtgtt aaaaaagggg agcggatagc
     1441 attatcgggt aatacaggcg gttcaaccgg gcctcattta cactatgaat tccatattaa
     1501 tggtcgaccg gtcaacccga ttacggtaaa attgcctggc tcaaattcag gtatgggtaa
     1561 taaagaacgt caagcattct taaataaagc gaagaatgta gaaagtagat taaaaatgta
     1621 aggattctca atgaaaaaaa atctaatcac tttaggatta atgtgtttat caaccatcac
     1681 gtttgcttca gatgcaaaac taaaaagcca gcttgaaaaa attggagcca cagatgttaa
     1741 aatttcagat tctccattaa caggctttaa aatggcgact tcaaatgaag gtgttgtata
     1801 tatcagccaa gacggtcgtt atgtaattca aggtaaagta tttgagctaa aaaatggtaa
     1861 agcgattgat attactaatc aaggattgtt ggcagaattg aattcataca ctaatgaaat
     1921 gatcgtatat ccagcgaaaa atgagaaaca tgtgattacg gtgtttatgg atattacttg
     1981 ccattattgc catttactac atactaaaat caaagaatat aatgatttag gtattaccat
     2041 tcgctatttg gcattcccgc gtggtggaat gaatacccaa acagcaaaac aaatggaagc
     2101 tatttggaca tcagcagaca aagtaaaagc actgaatgat gctgaagatg gtaaattacc
     2161 aacccaaata aaaacgccgg atattgtgaa aaaacattac caattaggga ttaaatttgg
     2221 tgtgacaggt accccaaata tggtaacttc agaaggtgag ttgattggtg gttatgtaga
     2281 gcctaaagaa ttagcgaaaa tgttaagtga gtaattcatt aacttgaata caagcggtct
     2341 ttttttgtaa aatttttgca aaagaagacc gcttgttgtt tcattaaaga agagtattgt
     2401 ggaaaaaata attaaaaggc gcccattatt aacaacggaa atagtctcta caaacccgtt
     2461 attaaatcga atctatcaaa gtcgaggcat aaagaatacg caagaactag agcataattt
     2521 aaagaatttg catagaccac agcaacttgc caatattgag caagccgttg acttgctatt
     2581 acaagccttt cgtgaaaaaa gccggatcat tattgtgggt gattttgatg cagatggtgc
     2641 aaccagtaca tcgcttgccc ttattgcgtt acgccaattg ggtttcgata aggtagatta
     2701 tttaattccg gatcgttttt ctcaggggta cggattgagt gtagcggttg ctgaaatggt
     2761 attagcaaaa ggggcggatt tagtcttaac ggtagataat ggaatttctt cgactgaagg
     2821 cattgctctg ctaaaaagcc atcagattca agttttggtt accgatcatc atttaccgcc
     2881 agagagccta cccaatgcag atgcactggt aaaccccaat ttagcttttt gtgaatttcc
     2941 gtctaaatct ttagccgggg taggcgtgat cttctatgta atgatggcat tgcgttctcg
     3001 tatgagagaa caacatttat ttgaaaataa accagagcca aattttgctg aattactgga
     3061 tttagtcgct ttaggcacag tggctgatgt agtgccgtta gatcaaaata atcggatatt
     3121 ggtgcatcaa gggttacagc gaatccgttc agggcattgc cgtttaggga taaaagcttt
     3181 agcggaggtg ggcaagcgag atctttctac tttgcaagca gcagatttgg gttttgctat
     3241 cgcaccacgt ttgaatgcag ctggtcggtt agaaaatatg tctttagggg ttgagttact
     3301 aatttgtgaa aatatggaat tagctcgccg gcttgcgctt gatcttgatt ctcttaatca
     3361 aacccgaaaa gagtttgaac aagaaatgaa agcagaagca ctgtcgattt gtgcgaattt
     3421 gccaagtctt gcgcagtctg aacaggcaca cggaatagtg ttatatcaag cagattggca
     3481 ccaaggtgta attgggatct tagcttctcg cattaaagat caatttaacc gtcctgtcat
     3541 tgcttttgca caagaaagtg aggaaagtga atatctaaaa ggttctgctc gctcgatcaa
     3601 cggagtacat atgcgagatt tactggaaca tatcgatatg cgacatccag acttgattga
     3661 aaaatttggt ggacacgcaa tggcggctgg tttgactatc catcaatcaa aattagattt
     3721 atttaaacag atatttgacc aatctattaa tgcaattatc gagcctgagc aattacaagg
     3781 catcatttat accgatggtg agttaaatgc actagagttt actttagcca atgccgagat
     3841 gattaggcaa ggtgggcctt ggggacaaca ttttccagaa cctagttttg aaggggagtt
     3901 tagcattctc caacaaaaat tactcgcagg taaacattta aaattaatgt tgcaatcaga
     3961 gaaagggcaa ctatttgatg caatttggtt taatgtggat gtaagggcgt ttcctgactt
     4021 atcgatcaaa aaggcaagat tagtttatag gttggatatt aatgaatttc gaggagagaa
     4081 atc
//
LOCUS       DANLRW010000158         4072 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.159, whole genome shotgun sequence.
ACCESSION   DANLRW010000158 DANLRW010000000
VERSION     DANLRW010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4072)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4072)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4072
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.159"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..428)
                     /locus_tag="PXA71_002398"
     CDS             complement(<1..428)
                     /locus_tag="PXA71_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-directed DNA polymerase"
                     /protein_id="HDL5106458.1"
                     /translation="MKMAKQEDLIMVLNPMLRGWANYHRSQVASKAFGRMDALVWKVL
                     WKWCERRHHNKGIMWIKEKYFCTTATRNWVFGTVYTNEKGETKPIDLFYCGYVKIKRH
                     VKIKSEYNPFLPEWELYGEKLSQERLYEEQSHRRQWQALY"
     gene            complement(425..1003)
                     /locus_tag="PXA71_002399"
     CDS             complement(425..1003)
                     /locus_tag="PXA71_002399"
                     /inference="COORDINATES: protein motif:HMM:NF012307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-directed DNA polymerase"
                     /protein_id="HDL5106459.1"
                     /translation="MYSHKGKKTNQPVEWVLDADIAGCFDHISHDWLLKHIPMNKRIL
                     RKWLKSGVVEFGRLKRTEEGTPQGGIISPTLANMALDGLEKLLETHFGGKGSRTIREN
                     KTYLVRYADDFIISGKTKELLENQVIPLIQNFLNERGLSLSTEKTKVVHIEEGFDFLG
                     WNVRRFKGKILNRPSQKNVKAFYNKVKEVISK"
     gene            complement(1004..1534)
                     /locus_tag="PXA71_002400"
     CDS             complement(1004..1534)
                     /locus_tag="PXA71_002400"
                     /inference="COORDINATES: protein motif:HMM:NF012307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase N-terminal
                     domain-containing protein"
                     /protein_id="HDL5106460.1"
                     /translation="MKERKHYTEKLACNPATSHISKWHYVDWHKAETYVKGMQIRIAK
                     ATLEGNWRKVKNLQRMLTHSHYAKLVAVRRVTENQGKRTSGVDKELWETPETKWQAAL
                     SLTEKGYKPSPLRRVYIPKPNGKKRPLGIPTMRDRAMQALYLLAIQPVAETTADKGSY
                     GFRLNRSTVDAITHIH"
     gene            complement(3216..3611)
                     /gene="rpsI"
                     /locus_tag="PXA71_002401"
     CDS             complement(3216..3611)
                     /gene="rpsI"
                     /locus_tag="PXA71_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015432457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDL5106461.1"
                     /translation="MTAANQNYGTGRRKSSSARVFIKPGSGNITINQRSLEVYFGRET
                     ARMIVRQPLELVELTDKLDLYITVKGGGISGQAGAIRHGITRALMEYDETLRPALRAA
                     GFVTRDARRVERKKVGLHKARRRPQYSKR"
     gene            complement(3628..4056)
                     /gene="rplM"
                     /locus_tag="PXA71_002402"
     CDS             complement(3628..4056)
                     /gene="rplM"
                     /locus_tag="PXA71_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDL5106462.1"
                     /translation="MKTFVAKPETVQRDWYVVDATGKTLGRLATELARRLRGKHKPEY
                     TPHVDTGDYIIVINADKVAVTGKKQTDKIYYWHTGYVGGIKDATFKEMIARRPEAVIE
                     IAVKGMLPKGPLGREMFRKLKVYAGSEHNHQAQQPQVLDI"
BASE COUNT         1048 a          916 c          727 g         1381 t
ORIGIN      
        1 ttatacagtg cctgccattg tcgtctgtgt gattgttctt catacagacg ttcttggctc
       61 agtttttcgc cgtacaactc ccattcaggc aaaaacggat tatattcaga cttaatttta
      121 acgtgtcgtt tgattttaac atagccacaa tagaataagt ctatcggctt agtttctcct
      181 ttttcattgg tataaactgt gccaaatacc caatttcgag tcgctgtggt acaaaagtat
      241 ttctctttta tccacataat acctttattg tgatgacggc gttcacacca tttccaaagt
      301 actttccaaa ctaatgcgtc cattcgtccg aatgccttac ttgcaacttg gcttcgatga
      361 taatttgccc aacctcgtaa cattgggttt agcaccatta taagatcttc ctgtttagcc
      421 attttcattt agaaattacc tcttttacct tgttgtagaa cgctttcaca ttcttttgac
      481 ttggtctgtt cagtattttt cctttgaaac gtctcacatt ccaacctaga aaatcaaaac
      541 cttcttcaat atgtaccact ttcgtctttt ctgttgataa ggataaacct cgttcattca
      601 gaaagttctg gataagtggg ataacttgat tttcaagtaa ctctttcgtt ttacctgata
      661 tgataaagtc atctgcataa cgtactaagt aagttttatt ttctcgaatt gtccgactgc
      721 cttttcctcc aaaatgagtt tctaacagtt tttccaatcc atctaatgcc atatttgcaa
      781 gcgttggcga gataatccca ccctgtggtg taccttcctc tgttcgtttc aaccgtccaa
      841 attccactac acctgatttt agccatttcc gcaatatccg tttattcatt ggaatatgct
      901 ttaatagcca gtcgtggctt atgtggtcaa aacaacctgc aatatccgca tcaagtaccc
      961 actcaacagg ttgattagtt ttcttgcctt tatgcgaata aatttagtgt atatgagtaa
     1021 tagcatctac cgttgaacgg tttaatctaa atccataaga acctttatcc gcagttgttt
     1081 ctgccacagg ttgtattgcc aataaataaa gggcttgcat tgctctatct cgcattgttg
     1141 gaatacccaa cggacgtttc tttccattcg gtttggggat atacactcgt cttaatggac
     1201 taggtttata ccctttttcc gtcaatgata gtgcggcttg ccattttgtc tctggggtct
     1261 cccaaagctc tttatcgaca ccacttgttc gcttaccttg attttcagtc actcttctta
     1321 ctgcaactaa tttagcataa tgtgagtggg ttagcattcg ttgtaagttt ttaaccttac
     1381 gccaattgcc ttccagtgtt gccttcgcaa tccgaatttg cattcctttc acatacgttt
     1441 cagctttatg ccaatcgaca taatgccatt tggagatgtg cgaggtcgct ggattgcaag
     1501 ctaacttttc agtataatgc ttacgctctt tcatacctac ctctgatatt acaagataag
     1561 tcgaaagtct cagcaagtgg gtagatcctt caagtaaaca aatccctatt gagataaact
     1621 atccttagtt tattcccttt ggttacaaga ggatcttacc gttttaccga taatttcaac
     1681 cgctcttgta accgattggg ttaaagagtc gagcgctagg ttatgatgag cctaacgctc
     1741 atttctttaa tttgtttttg tacctattca acattgtatt ccttgataac attcaatttc
     1801 tcttctgtta tctacaatct ctttcggtgt tacccttaaa ggaaacgcta ttcatcttac
     1861 gatgaaagac cagttagaag tctgcaccct ttcgggttag gctatgtttc acaccctatc
     1921 tatgccatta cagcatagca ttcgcttttt ctaacctccc ttacctgcat tcccaacagt
     1981 atcgcttacg ctttacttgc cttttcctct tttaccttcg ccatctattt caaacggttt
     2041 gagtattgtg ggcaaggcag aaatacaggc ttaccaagtt ccattactat cacacgagta
     2101 gtgaagatac agtctctccc ccgacagtgc tttgatggcg tatcctcacg ttaaagaaga
     2161 ataaccgact gcctaccttt tggtcagagc ctatcaatag ctttggctct ctctcgataa
     2221 cgaggtttat caactgttca cttacgttta tctttctacc cagtctagcc ccttgaaggt
     2281 gtgctattca ctttctccca atgtcctctc acgatttcat tgactgattt tcatcagggg
     2341 ttcattgtca ggaagctccg caccacaccg ttaccggtgt cgcactatcc ctagactact
     2401 gttagccata taacaggtta ccttatcatt ccctccgtac tactcatatc ttcggattgt
     2461 ttgaccgtaa caatgacagt aatagcttac gcatacttac taagtcagta tcctatactg
     2521 cataaataag tccgaacctt tacaaaataa attcacttat gcgactaaag tcgctttgtc
     2581 tatatccaaa ttttcccgca aatagcctat aacctgtcca ataggcgaag gtagctaacc
     2641 ctagctaatg tgagtattag aggtgatttt aacgagaatt taaggtataa ttatccctag
     2701 ctcataaaaa cgaataaaca agagtttatc cttagtgttt ttattcacta ttgaggagca
     2761 ttctacgatt accgtagatt gcgagtgtga aaagtataag taaagatggc actccttccc
     2821 taagatttac caagtcttag ttctgatgtc ttttctgagt gctgaggcga tctattggac
     2881 tttatttata gtaggtgttg taaattttct ctgctctggg gtatgggtaa ctccggtctg
     2941 cggatcttgc tttcttactc tatcttggta ttaagaaaaa aaccaagtac atcaaagtga
     3001 agatcatacc ttacagcctt tcgagttggt tcatttactt tcccaactta gaacaagagt
     3061 gcttgggcaa agcccctttt ctcttgcctg tctttccaag cactccgaag agtgcttgga
     3121 aagtcggaag caggtgataa gaataccacc cacttccagc aataactcct tgatatataa
     3181 ggagttattg ccataagtac gacaacttgt cgcacttaac gttttgagta ttgtggacga
     3241 cgacgtgctt tgtgtaaacc cactttttta cgttcaacgc gacgtgcgtc acgagtaacg
     3301 aagcctgctg cacgaagtgc tgggcgtagc gtttcatcgt attccattaa tgcacgagtg
     3361 ataccgtgac ggattgcacc cgcttgacca gaaataccac cacctttaac agtgatgtaa
     3421 aggtctaatt tatcagttaa ttcaaccaat tctaacggct gacgtacgat catacgagct
     3481 gtttcacgac cgaagtaaac ttcaagtgaa cgttggttga tagtaatgtt acctgaaccc
     3541 ggtttgataa atacacgggc tgaagagctt ttgcggcgac ctgtgccgta gttttgattt
     3601 gctgctgtca tttttatgct ccgtgaatta gatatctaaa acttgtggtt gttgtgcttg
     3661 gtgattgtgt tctgaacctg cgtaaacttt taatttacgg aacatttcac gaccaagtgg
     3721 accttttggt aacatacctt tcactgcgat ttcaatcaca gcttcaggac gacgagcaat
     3781 catttctttg aaggttgcat ctttgatgcc acctacatag ccagtgtgcc agtagtagat
     3841 tttgtcagtt tgttttttac ctgttactgc tactttgtct gcattgatca cgatgatgta
     3901 atcaccggta tcaacgtgtg gagtgtactc aggtttatgt ttaccacgaa gacggcgtgc
     3961 caattcagtc gctaaacgac ctaatgtttt acccgtcgca tctactacat accagtcacg
     4021 ttgtactgtt tctggttttg ctacaaaagt tttcattaat taaataccaa at
//
LOCUS       DANLRW010000159         4056 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.160, whole genome shotgun sequence.
ACCESSION   DANLRW010000159 DANLRW010000000
VERSION     DANLRW010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 4056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4056
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.160"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXA71_002403"
     CDS             complement(230..1870)
                     /gene="pgi"
                     /locus_tag="PXA71_002403"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013527751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDL5106463.1"
                     /translation="MQKINPVQTFAWNALEQHKADNLSIPQLFAEDPNRFDKYSLRFE
                     DQLLVDFSKNAINEKTLTLLRQLANECGLESAKNAMFSGKKINRTENRAVLHVALRNR
                     ANTPIAVDGKDVMPEVNAVLAKMKDFCERVISGEWKGYTGKTITDVINIGIGGSDLGP
                     YMVTEALRPYKNHLNMHFVSNVDGTHIAEVLRKVNPETTLVLVASKTFTTQETMTNAL
                     SARKWLLDSAKDESAVAKHFVALSTNAKEVEKFGIDTANMFEFWDWVGGRYSLWSAIG
                     LSIALSLGFENFEQLLAGAHAMDKHFLITPIEKNIPTTLALVGIWNNNFLGAESEAIL
                     PYDQYMHRFAAYFQQGNMESNGKFVGRDGKPVTHQTGPIIWGEPGTNGQHAFYQLIHQ
                     GTKLIPCDFIAPAQTHNPLSDHHNKLLSNFFAQTEALAFGKSKETVEKEFLDAGKTLE
                     EVAEIVPFKVFSGNKPTNSILVQKITPYSLGALIAMYEHKIFVQGVLFNIYSFDQWGV
                     ELGKQLANRILPELETDEKINSHDSSTNGLINQFKAWR"
     gene            complement(1903..2151)
                     /locus_tag="PXA71_002404"
     CDS             complement(1903..2151)
                     /locus_tag="PXA71_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory factor UbiK family protein"
                     /protein_id="HDL5106464.1"
                     /translation="MLTPKNLEAIAQQLHNALPQSLKNVGNDLDEKFKQILQAQLARL
                     DVVTREEFDVQSQVLLRTREKLTELEKRLDELTQRTDE"
     regulatory      2275..2319
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            2323..2991
                     /gene="queC"
                     /locus_tag="PXA71_002405"
     CDS             2323..2991
                     /gene="queC"
                     /locus_tag="PXA71_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDL5106465.1"
                     /translation="MTHQKPKAVVIFSGGQDSTTCLFQAIAEFGKENVEVVTFQYGQR
                     HSIELEKARWISNDLGVKQTLIDTSVIKAITTNALMDNNAEIQQQGSTPNTFVDGRNA
                     LFLLYTAIYAKGQGIQTIFTGVCETDFSGYPDCRDVFVKSMNVTLNLAMDYNFNIRTP
                     LMYLTKKETWALADKLGAFDYIRDHTHTCYLGVEGGCHDCPSCVLREKGLNEYLAERE
                     VSNV"
     gene            2984..3406
                     /gene="queD"
                     /locus_tag="PXA71_002406"
     CDS             2984..3406
                     /gene="queD"
                     /locus_tag="PXA71_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HDL5106466.1"
                     /translation="MFKIAKEFSFDMAHMLDGHDGKCQNLHGHTYKLQVEVAGELFQE
                     GAKRGMVMDYSDLKAVVKQHILEPMDHAFIYDLQSERESQVAQLLIDLNSKVYGIPTR
                     TTAEEMAKYMFEKLEKVGLPVSLIRLWETPTSYCEYSK"
     gene            3406..4032
                     /locus_tag="PXA71_002407"
     CDS             3406..4032
                     /locus_tag="PXA71_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDL5106467.1"
                     /translation="MAELISNPRFPIVEIFESLQGEGFNTGMPAIFVRFGKCNLTCPW
                     CDTNYNQFEQWTLSDILAKVRSYSAKNVIITGGEPTIQPNLSLLLEQFKKEGYFLAIE
                     TNGLKEVPAQIDYIATSPKRMYQEKYQRRCIEFANEVRIVVDGEVQGFCEQIESQIKA
                     EHYYLSPCEVEGKMNLLETITQIGLLNQRPNKPKWQLSIQTHKIVGIE"
BASE COUNT         1227 a          745 c          862 g         1222 t
ORIGIN      
        1 tgagtgaaga gtagaggtaa aatagtaagc ctttttaacc agtttattta ttgtacctat
       61 tttagaaaaa agaaaagtag aaaagagata ttaggtaaac tcatagtgca aaagaatata
      121 gaaaaaactg cttgtgtaga aatggcgctt agttcagtcc tcagctaaaa ttttagaaaa
      181 aaagcataga gattttttac ctctatgctt tttattgtat tgactatatt taacgccaag
      241 ccttgaattg gttaattaaa ccatttgtgg agctgtcgtg gctgttgatt ttttcatcgg
      301 tttcgagttc gggtaaaatg cggtttgcaa gctgtttgcc taactccacg ccccattggt
      361 cgaaactgta aatgttgaac agcacgcctt gcacgaagat tttgtgttca tacattgcaa
      421 ttaatgcccc taagctgtac ggggtgattt tttgcaccaa gatagagttg gtcggtttgt
      481 ttccgctgaa cactttaaac ggcacgattt cagctacttc ttccaacgtt ttacctgcat
      541 ctaaaaactc tttttcaact gtttcttttg atttaccgaa agctagtgct tcagtttgag
      601 caaagaagtt agaaagcagt ttgttgtgat gatcgcttaa cggattgtga gtttgtgccg
      661 gtgcgataaa atcacaagga attaattttg tgccttgatg aatgagttga tagaatgcgt
      721 gctgaccgtt agttcccggt tcgccccaaa taatcggacc tgtttggtga gtaaccggtt
      781 tgccgtcacg ccccacaaat ttaccgtttg attccatatt gccttgttgg aaataagccg
      841 caaagcggtg catatattgg tcgtaaggta aaatcgcttc tgattcagca cctaagaaat
      901 tgttattcca aatgccgact aaagctaacg tagttggaat gtttttctca atcggcgtga
      961 ttaagaaatg cttatccatt gcgtgagcac cagcaagtag ctgctcgaag ttctcaaaac
     1021 ctaatgaaag ggcaatcgaa agcccgatgg cagaccataa tgagtaacga ccgccaaccc
     1081 aatcccagaa ttcaaacata ttagcggtat caataccgaa tttttccact tctttggcat
     1141 tggttgaaag tgccacgaaa tgttttgcta ccgcagattc atctttggca gaatcaagta
     1201 gccatttgcg agctgaaagg gcattggtca tcgtttcttg agtggtaaag gtttttgaag
     1261 ccactaacac taacgtggtt tcaggattaa ctttacgcaa cacttcagca atatgcgtgc
     1321 cgtccacgtt agacacaaag tgcatattaa ggtgattttt ataagggcgt aatgcctctg
     1381 ttaccatata aggacctaga tccgagccac caataccgat attgatcaca tcagtaatcg
     1441 ttttgccggt atagcctttc cattcgccgg aaataacacg ctcgcagaaa tctttcattt
     1501 tcgctaacac ggcattcact tccggcatta catctttgcc atcgactgcg attggtgtat
     1561 tggcacggtt acgcagtgca acgtgcaata cggcacggtt ttcagtgcgg ttgatttttt
     1621 tgccggagaa catcgcattt tttgctgatt ccaaaccaca ttcatttgcc agttggcgaa
     1681 gtaaggttaa ggttttttcg ttgatcgcat tttttgaaaa atcgactaat aattgatctt
     1741 caaaacggag ggaatatttg tcgaaacggt ttggatcttc ggcaaaaagt tgaggaatag
     1801 aaaggttgtc tgctttatgt tgctctaagg cattccaagc aaaagtttgc acagggttaa
     1861 ttttttgcat ctgagtttcc ttatactaaa ttaaaaaatc gattattcat ctgttctttg
     1921 agtcagttca tcaagacgtt tttctaattc ggttaatttt tcacgagtgc ggagtaacac
     1981 ttgagattga acatcaaatt cttcacgagt gacaacatca agacgggcta attgggcttg
     2041 aaggatttgc ttaaattttt catctagatc attaccgaca ttttttaagc tttgcggtaa
     2101 ggcgttatgg agttgttgag caatcgcttc taagttcttc ggcgtgagca tatttaaatt
     2161 ccttactata aatgagtatc ccaattttat tgaattttgg gtttaagaga aagcaaattc
     2221 tttgtaaaat atcacctttc gcaaaataca agcaaaaaag accgcttgta ttttttattt
     2281 gtggttcgta aacctcccac acaaaaaaac taaggacaca aaatgactca tcaaaaacca
     2341 aaagccgttg tgattttttc cggcggtcaa gactctacca cttgtttatt ccaagctatt
     2401 gctgaatttg gcaaagaaaa tgtggaagtc gttacctttc aatatgggca acgccattcg
     2461 attgaacttg aaaaagcacg ctggatttct aacgatttag gcgtcaaaca aacgctgatt
     2521 gatacttcgg tgattaaagc gattactacc aatgcgttaa tggataataa tgctgaaatt
     2581 caacaacaag gcagcacacc caataccttt gtggatgggc gtaatgcctt atttctgctt
     2641 tataccgcca tttatgccaa agggcagggc attcaaacta tttttaccgg cgtgtgtgag
     2701 accgatttta gtggttaccc tgattgccga gatgtatttg taaaatcaat gaatgtaacg
     2761 ctaaatttag cgatggacta taatttcaac attcgcacgc cattgatgta tttaactaaa
     2821 aaagaaactt gggcattagc agataagctg ggtgcttttg attatattcg agaccatacc
     2881 cacacctgtt atttaggcgt tgaaggtggt tgccacgact gcccgagttg cgtattgcga
     2941 gaaaaaggct tgaatgaata tttagcagaa agggaggtaa gcaatgttta aaattgctaa
     3001 agaatttagt tttgatatgg ctcatatgct agatggacac gatggcaaat gccaaaactt
     3061 acacggacac acctacaaat tgcaagttga ggtggcaggt gagctatttc aagagggagc
     3121 taaaagagga atggtaatgg actattcgga tctaaaagca gtggtaaaac aacatatttt
     3181 agagccgatg gatcacgctt ttatttacga cttacagagt gagcgtgaaa gccaagtagc
     3241 acaattatta attgatttaa actccaaggt ttatggtatc ccaactcgta ccacagccga
     3301 agaaatggcg aaatatatgt ttgaaaaatt agagaaagtg ggcttaccgg ttagcctaat
     3361 tcgcttgtgg gaaacgccta cttcttattg tgagtacagc aaataatggc ggagttaatt
     3421 tcaaaccctc gttttccgat tgttgagatc tttgaaagct tacaagggga aggctttaat
     3481 accggaatgc cggctatttt tgtacgtttt ggcaaatgca acctcacttg cccgtggtgc
     3541 gataccaatt acaatcaatt tgagcaatgg acgttaagcg atattcttgc caaagtaaga
     3601 agctattctg cgaaaaatgt gattattacc ggaggcgagc caacgattca gcctaattta
     3661 tcgttattat tagaacaatt taaaaaagag ggatattttt tagcgatcga aaccaacggc
     3721 ttaaaagagg ttccggcaca aattgattat attgcgacca gcccaaagcg aatgtaccaa
     3781 gaaaagtatc aacgccgttg cattgaattt gcgaatgaag tccgtatcgt cgttgatgga
     3841 gaagtacagg gtttctgtga gcaaatagaa agccaaatta aagctgagca ttactatctt
     3901 tcaccttgtg aggtagaggg aaaaatgaac ttgctggaaa ccatcaccca gattgggtta
     3961 ttaaatcagc gtccaaataa gcctaaatgg cagctaagta tccaaacgca taaaattgtg
     4021 gggattgaat aagtagaagt tagaagatga tttgta
//
LOCUS       DANLRW010000160         3949 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.161, whole genome shotgun sequence.
ACCESSION   DANLRW010000160 DANLRW010000000
VERSION     DANLRW010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3949
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.161"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(334..1428)
                     /locus_tag="PXA71_002408"
     CDS             complement(334..1428)
                     /locus_tag="PXA71_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL5106468.1"
                     /translation="MKKTTLAILASALIANSALAITIYDHKETGTQIEFIGSARIKWE
                     STSDKTSPVNGKATRNHVNHAVDNNGSRFGFRLTQQVGHGFYALGRVEWRMRGDSSSQ
                     HNFDHIYDHQLYAGIGHKQYGELTYGNMTNIADEVKQTDLPNTLSLSDGLLTGSSRRT
                     LQYVYKGIEGLKLGAFYGGNSQRGNNGLDLVNKRKDIWGAAAIYNYKIDDNQSLKLAT
                     GATRERSEQSIGNYERIALAFGTAYTYGKTTLGLDLERRETEDQNAIGHKRIEKEVRT
                     VLLHRLTDQWNAYTMYAYKENKLNAVGLANDSKVKRNQFMLGTEYYIVPKHLKGFVEW
                     QATRAKHYTNDVKTAKSRNYTTVVGLRAYW"
     gene            1562..2740
                     /gene="lpxB"
                     /locus_tag="PXA71_002409"
     CDS             1562..2740
                     /gene="lpxB"
                     /locus_tag="PXA71_002409"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HDL5106469.1"
                     /translation="MKQQFPVIGLVAGEVSGDILGAGLIKALKVHYPNARFIGVAGSR
                     MIEAGCQSLFDMEELSVMGLAEVVKHLPRLLKRRKQVIDEMLKLKPDVFIGIDAPDFN
                     LTVEEKLKASGIKTIHYVSPSVWAWRQKRVFKIARAANLVLAFLPFEKAFYDKFNVPC
                     RFIGHTMADAIPLEPNRTEACLALNIDESKRYMAILVGSRGSEIQFLAEPFLKAAQLL
                     KARFPDLQFLVPMVSQKRMEQFNAIKQQVAPELELNIIQGKARQAMIASECTLLASGT
                     AALEAMLCKSPMVVGYRMKPLTYWLAKKLVKTDYISLPNLLAQAPLVPELIQEACNPE
                     NLAQELSLFLADDEKNQQHKALLKQQFMQLHQSIQCNADEQAAQAVIDLLNGSTSGQI
                     "
     gene            2767..3819
                     /gene="sohB"
                     /locus_tag="PXA71_002410"
     CDS             2767..3819
                     /gene="sohB"
                     /locus_tag="PXA71_002410"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HDL5106470.1"
                     /translation="MWKEVLLNYGIFLLELLTVFGIIAVVVMLILESKKQNENGSISI
                     TNLSEKYKEQQKSLSGFFLSEEELKHQEKQEKKVAKEKAKAEKKRLKAGEECVESPSR
                     LFVLNFNGDMMAHEVNSLRREIDAVISLANPEKDEVLLKLESPGGVVHGYGLAASQLQ
                     RLRDRNIYLTAAVDKVAASGGYMMACVANKIVSAPFAVIGSVGVVAQVPNIHRLLKKH
                     DIDVDVMTAGEYKRTVTLVGENTEKGKQKFQQELEETHSLFKQFVARHRPQLDIEQVA
                     TGEHWFGQQAIELNLVDEIATSDDLLLNAIKEKEVIELKYKEKKKLAQKLGSQFEQSA
                     ENLLAKILHKSRSTLM"
BASE COUNT         1173 a          681 c          856 g         1239 t
ORIGIN      
        1 gactgtcaga ttaggtttga tcttctacat ataataaccc ctcatcactt tttgcagttt
       61 aacctctttt gcaacagata atttaaattt aggcgttttg gctgctcagt tattgccatt
      121 atgattatat tagttcacac taaaatttta gtgttgtttc ttaaagctga agatgctaat
      181 aggtgagtaa gcggttttta ccactttgaa gataaatgca atagcttctt gtttgaagga
      241 ttagttgtat ttaatcataa aaaatctgca ccttaatcag ttggttagcc caacttttag
      301 gtgcagatca ttctagtacg cttttcagtt ttattaccaa tatgctcgta agcctacaac
      361 agtcgtataa ttgcgagatt ttgcggtttt tacatcatta gtatagtgtt tagcacgagt
      421 tgcttgccat tcaacaaagc cttttaagtg ttttggaaca atgtaatatt ccgttcccaa
      481 cataaattgg tttcttttaa ctttgctatc atttgccaag cctacagcat taagtttgtt
      541 ttctttataa gcatacattg tgtaagcatt ccattgatcg gttaaacgat ggagtaacac
      601 agtgcgaact tctttttcga tacgtttgtg accgatagca ttttgatctt ccgtttcacg
      661 gcgttctaaa tctaagccaa gggtagtttt tccgtaggta taagctgtac cgaaggcaag
      721 agcaatgcgt tcataattgc cgatagattg ctcagaacgc tcacgggttg cacctgttgc
      781 taattttaag ctttggttat catcaatttt atagttataa attgctgctg caccccaaat
      841 atctttacgt ttattgacta aatctaagcc attgtttcca cgttggctat ttccgccata
      901 gaatgctccg agttttaatc cttcgatgcc tttgtaaaca tattgaagcg tacgtcgtga
      961 tgaaccggta agtaagccat cacttaagct gagtgtattt ggtaagtcag tttgttttac
     1021 ttcatcggca atattagtca tattgccgta tgttaattca ccgtattgtt tatgcccgat
     1081 tcctgcatag agttgatgat cataaatatg atcgaagtta tgttgtgagc ttgaatcgcc
     1141 acgcatacgc cattccacac gacctaaagc atagaatccg tgacccactt gctgggttaa
     1201 acggaaacca aaacgagagc cgttgttatc cactgcgtga ttaacgtggt tgcgggtagc
     1261 tttaccattt accggtgagg ttttatctga ggtgctttcc cacttaatac gagcagaacc
     1321 aataaattca atttgtgtac cggtttcttt atgatcgtaa atcgtaatag ctagagctga
     1381 gtttgcgatt aaggctgatg ctaaaatcgc taatgttgtt tttttcataa aaatcactcc
     1441 atatgaatag ataaagggag gtagtgtatg tgaatattca ttgctagaca ataatgtttt
     1501 gttagtttat atgatgattg gttataatag agtcacttac agatcttcaa taatatttaa
     1561 tatgaaacaa caattccccg ttattggctt agttgctggt gaggtctctg gcgatattct
     1621 tggtgccggg ttaattaagg cgttaaaagt acattacccg aatgctcgat ttatcggtgt
     1681 tgcaggctct cgaatgattg aggctggctg ccagtctttg tttgatatgg aagagctttc
     1741 tgtaatgggg ctagcagagg tggttaaaca tttacctcgt ttacttaagc gtcgtaaaca
     1801 ggttattgat gagatgctta aattgaaacc agatgtattt atcggtattg atgcaccgga
     1861 ttttaattta accgttgaag aaaaactcaa agcgagtggg attaaaacaa tccattatgt
     1921 tagcccttcg gtgtgggctt ggcgacaaaa gcgggtgttt aaaattgcca gagcagctaa
     1981 tttagtgttg gcatttctgc catttgagaa agcgttctat gataaattca atgtgccttg
     2041 tcgttttatc gggcatacga tggcagatgc gatcccactc gaaccaaatc gtacagaggc
     2101 atgtttagcg ttaaatattg atgaatccaa gcgatatatg gcaattttgg tgggaagccg
     2161 tggcagtgaa attcagtttt tggctgagcc ttttttgaag gctgctcagt tgttaaaagc
     2221 ccgttttccg gatttacagt ttttagtgcc aatggtcagc caaaagcgaa tggagcaatt
     2281 taatgcaatt aaacagcaag tagctcccga gttggaactg aatattattc aaggcaaggc
     2341 tcgtcaggct atgattgcgt cagaatgtac tcttttggca tcgggaacag cagcactaga
     2401 ggcaatgttg tgcaaatctc cgatggtagt tggttataga atgaaaccgc tgacttattg
     2461 gttagcaaaa aaattagtga aaaccgatta tatctcctta ccgaatttat tggctcaagc
     2521 cccattggta ccagaattga tccaagaagc atgcaacccg gaaaatttag ctcaagagtt
     2581 atctctattt ttagctgatg atgagaaaaa ccaacaacat aaagcattgc taaaacagca
     2641 gtttatgcag ctacatcaat caattcaatg taatgctgat gagcaagctg cccaagcggt
     2701 tatcgatctc ctaaacggct cgacaagcgg tcaaatttag ttagtttttt gtaaaaagga
     2761 aaatttatgt ggaaagaagt attacttaat tatggtattt ttttattaga gttattaact
     2821 gtatttggca ttattgcagt ggtggtgatg ctgattttgg aatcgaaaaa gcagaatgaa
     2881 aacggctcaa tttcaattac caatttatct gagaaatata aagagcagca aaaatctctt
     2941 tccggctttt ttctaagtga ggaagaatta aaacatcagg aaaagcagga gaaaaaagta
     3001 gcaaaagaga aagctaaagc agaaaaaaaa cgcttaaaag caggcgaaga atgtgtagaa
     3061 agcccttccc gtttatttgt attgaatttt aatggcgata tgatggctca cgaagtaaat
     3121 tccctacgcc gtgaaattga tgcggtaatt agcctcgcga atccggaaaa agatgaagtt
     3181 ttacttaaac ttgaaagtcc gggcggagtg gtgcacggtt atggattggc tgcttcgcag
     3241 ttacaacgtt tgcgtgatcg caatatttat ttaaccgcag cggtagataa agtagctgcc
     3301 agcggtggtt atatgatggc gtgtgtggcg aataaaattg tctctgcccc atttgcggtg
     3361 attggctcag tgggggtggt ggctcaggtg ccgaatatcc accgcttact gaaaaaacac
     3421 gatattgatg tggatgtgat gactgcaggt gaatataaac gcacggtgac gctggtggga
     3481 gaaaataccg aaaaagggaa acagaaattc cagcaagaac tggaagaaac gcactctctg
     3541 tttaagcaat ttgtggctcg acaccgccca caactggata ttgagcaggt tgcaacaggc
     3601 gagcattggt ttggtcagca agcgattgag ctaaatttgg ttgatgagat tgcaaccagt
     3661 gatgatctgc tcctcaatgc aattaaggaa aaagaagtga tcgagctaaa atataaagag
     3721 aagaaaaaac ttgctcagaa attgggttct caattcgagc aatcagcaga gaacctgctc
     3781 gctaagattt tacataaaag tcgttcaacg ctgatgtagc gtatatatta ttaaagggct
     3841 atcgtttata tagcccctta ttttatcagt tagtaataga atgaagtatt tgttcactat
     3901 ttaaatgacc tggaatactt ttctttaaat tgagtgaaga atctaacaa
//
LOCUS       DANLRW010000161         3898 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.162, whole genome shotgun sequence.
ACCESSION   DANLRW010000161 DANLRW010000000
VERSION     DANLRW010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3898
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.162"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..1943)
                     /locus_tag="PXA71_002411"
     CDS             complement(<1..1943)
                     /locus_tag="PXA71_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Met) cytidine acetyltransferase"
                     /protein_id="HDL5106471.1"
                     /translation="MRTIAIITSPNNADFIQQGYFYIPENHQLKAIPFSNAKTILGQE
                     YPFAIYTMQAENGVNFNLDAFAILAGTIQENGTLFLLCPQWDNLENELDFDALRWNEN
                     QAIACPNFYQHFKQLVAKFGFEVRTNLPKLPATSGQIPSKIYQLTQEQQNILQNLPLD
                     PADIHLITAPRGRGKSTLAGRLAKALPAQNKVLITARSYSALPSFWRSAEQKIPFFAP
                     DNLIEQVKSKNISPNQWLFIDEAASLPLPILHTLCAYFEKVVLTTTTQNYEGTGRGFE
                     LKFPVMLDKPFKHWTLSQPLRWSENDPLEAFVTELLLLSEEKSPLFSKEGKGEIYSLR
                     SHYVPLLKQRSNAKRLWQKQLSKNISYSNKHLQEKIAFYHLLANAHYKTTPTDLRRLF
                     DGENQLLFSQQENEQLIGGIWAMQEGGLDEKLTQAIWLGERRPQGSLVAQYLCFQGNL
                     PQACKLHSIRISRIAVLPEKQNQGVGKRLISQFILQNSVEKRPLDFISVSFGLTTPLH
                     AFWQSCGFQLVQITPNKEASSGYQSAMMIYPISEQGKLFAQQATQAFARDFALQPFFT
                     EICEELQNFEQFRPLATHNLDERDWKNLTAFAHGKRTFSAAYVSLKRLYLSDKARFSE
                     LDIFERKGQKISKMEVENYRKLV"
     gene            complement(2021..2503)
                     /gene="ybeY"
                     /locus_tag="PXA71_002412"
     CDS             complement(2021..2503)
                     /gene="ybeY"
                     /locus_tag="PXA71_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDL5106472.1"
                     /translation="MENLYIDLQIACENTENLPSEQQFYTWVQKALAVEAKTDDFPES
                     EITIRIVDEAESHELNLTYRGKDKPTNVLSFPFEAPEGIEMPLLGDLVICRQVMEKEA
                     EEQGISAESHWAHLAIHGTLHLLGYDHIEEDEAVEMESLETEIMQSLGYEDPYLSEKI
                     "
     gene            complement(2536..2991)
                     /gene="moaE"
                     /locus_tag="PXA71_002413"
     CDS             complement(2536..2991)
                     /gene="moaE"
                     /locus_tag="PXA71_002413"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HDL5106473.1"
                     /translation="MFETLIEVQEAEFDQNRIYQWLSEQHSVGAATLFIGKVREMNLG
                     DNVSGLFLEHYPAMTKKALQEIVAQARTRWDLQRVAVIHRIGQLHTGDEIVLVGVSSA
                     HRGDAYHANEFIMDYLKTKAPFWKREQTQAGERWIEGRESDQQAAKKWQ"
     gene            complement(2993..3238)
                     /gene="moaD"
                     /locus_tag="PXA71_002414"
     CDS             complement(2993..3238)
                     /gene="moaD"
                     /locus_tag="PXA71_002414"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005631889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HDL5106474.1"
                     /translation="MIKILFFAQVRELVATDRLDVEPTFTTAEALREHLSQQGKKWQL
                     ALEKGKLLVAINQTICPLETEIKDGDEVAFFPPVTGG"
     gene            complement(3231..3707)
                     /gene="moaC"
                     /locus_tag="PXA71_002415"
     CDS             complement(3231..3707)
                     /gene="moaC"
                     /locus_tag="PXA71_002415"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005597027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDL5106475.1"
                     /translation="MTTFTHINQNGEANMVDVSMKQETVRIARAEAFVRMNAETLQMI
                     VSGNHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLEALPESNQVRIESL
                     CKLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMIIENVRLLSKSGGKSGDFKVD"
BASE COUNT         1030 a          846 c          806 g         1216 t
ORIGIN      
        1 aaaacgagtt ttcgataatt ttccacctcc attttggaga ttttttgccc ttttcgttca
       61 aaaatatcca gctctgaaaa gcgtgcttta tccgataaat aaagccgttt taaactcaca
      121 tacgccgctg aaaacgtccg cttgccatga gcaaacgcgg ttaaattttt ccaatcacgt
      181 tcatctaaat tgtgtgtggc aagcggtcga aattgttcga aattttgcaa ttcctcacaa
      241 atttccgtga aaaatggctg aagggcgaaa tctctggcaa aggcttgggt tgcctgctgt
      301 gcaaataact ttccttgctc cgaaatcggg taaatcatca ttgcactttg ataaccactg
      361 cttgcctctt tattcggtgt gatttgcaca agttggaaac cacaagattg ccaaaatgcg
      421 tggagtggag tagttagccc aaagctcaca gagataaaat caagcggtcg tttttctacc
      481 gaattttgca aaataaactg agaaatcaac cgcttgccaa cgccttgatt ttgcttttca
      541 ggcaataccg caatccgaga aatgcgaatg gaatgcaatt tgcaagcctg cggtaaattc
      601 ccttgaaaac agagatattg agccactaga ctgccttgcg gacggcgttc ccctagccaa
      661 atggcttggg ttaatttttc atctaaacca ccctcttgca ttgcccaaat tccgccgata
      721 agttgctcgt tttcctgttg tgaaaacaaa agctgatttt cgccatcaaa taaacggcgt
      781 aagtcagttg gagtggtttt gtaatgggcg ttggcgagta agtggtagaa agcgattttt
      841 tcctgtaaat gcttattcga ataacttata ttcttcgata attgcttctg ccacaaacgc
      901 tttgcgtttg aacgttgctt tagcaacggc acatagtgtg agcgaagcga ataaatctcc
      961 cccttcccct ctttgctaaa gaggggagat ttttcttcgg aaagtaatag caactcagtc
     1021 acaaatgctt cgagaggatc attttcgctc caccgcaatg gttgagataa cgtccaatgt
     1081 ttaaacggtt tatccaacat taccgggaat ttcagctcaa atcctcgccc cgtgccttcg
     1141 taattttggg ttgttgtggt taaaaccact ttttcaaaat aggcacaaag tgtgtggagt
     1201 atcggcaagg gtaggctagc tgcctcatca ataaagagcc attggttagg tgaaatgttt
     1261 ttacttttaa cttgctcgat taaattgtca ggtgcgaaaa aagggatttt ttgctctgcc
     1321 gaacgccaaa aactgggcaa tgcagaataa gaccgtgcgg taattaatac cttattttgt
     1381 gcgggtaacg cttttgcaag tcgccctgca agggtagatt tgccccgccc acgaggggcg
     1441 gtaatcaaat gaatatcggc aggatcaagc ggtagatttt gcaaaatatt ttgctgttct
     1501 tgcgttaatt ggtaaatttt tgaaggaatt tgaccgcttg tagccggtaa ttttggcaaa
     1561 ttagttctga cttcaaaacc aaatttagcg actaattgtt taaaatgttg atagaaattc
     1621 gggcaggcaa tagcctgatt ttcgttccaa cgtaacgcat cgaaatctaa ttcattttcc
     1681 aaattatccc actgaggaca aagcaaaaat aaagtaccgt tttcttgaat agtgccggca
     1741 agtattgcaa aagcatctaa gttaaaattc accccatttt ctgcttgcat agtataaatg
     1801 gcaaaagggt attcttgtcc taaaatcgtt ttggcattgg aaaaggggat agctttaagc
     1861 tgatgatttt cgggaatgta aaaatagcct tgttgaataa agtcggcatt gttaggagat
     1921 gttatgattg cgatcgttct catataactt gtaggaacag ctcctgtgcc tgtccgatta
     1981 taatggagta ctggagggca caggaccctc ccctacaaga ctatattttt tctgaaagat
     2041 acggatcttc ataccctaaa ctttgcataa tttcggtttc gaggctttcc atttccactg
     2101 cttcatcttc ctcaatatgg tcgtagccga gcagatgaag tgtgccgtga atcgccaaat
     2161 gagcccaatg ggattcggct gaaatacctt gttcttccgc ctctttttcc attacttgac
     2221 gacagatgac taaatcaccc aatagtggca tttcgattcc ttcgggggcc tcaaacggga
     2281 aagatagcac attggttggc ttgtctttac cacgataagt cagatttagc tcgtggcttt
     2341 ctgcttcatc gacaatccga atggtgatct cactctcagg gaaatcatcg gtttttgcct
     2401 caactgcgag ggctttttgt acccaagtat aaaattgttg ttcacttggt aagttttcgg
     2461 tattttcgca ggcgatctgc aaatcaatat ataaattttc cattcgttac cttttgcaaa
     2521 ttattgccat tttttctatt gccatttttt ggcggcttgt tggtcactct cacgcccttc
     2581 aatccaacgt tcaccggctt gggtttgttc tcgtttccaa aatggggctt tggttttgag
     2641 ataatccata ataaactcgt tggcgtggta ggcatcacct cgatgagcag aactcacacc
     2701 gactaatacg atttcatcac cggtatgcag ttgcccaatg cggtgaatca ccgcaacgcg
     2761 ttgtaaatcc caacgagtgc gagcttgagc cacaatttct tgcaatgctt ttttagtcat
     2821 tgccggatag tgttcaagaa acaaaccgga aacattatcg cccaaattca tttcacgtac
     2881 tttaccgatg aatagagtgg ctgcccccac gctatgttgt tcactgagcc attggtaaat
     2941 gcggttttgg tcaaattcag cttcttgtac ttcaatcagg gtttcaaaca ttttagcccc
     3001 cggttaccgg tgggaagaat gccacttcat cgccgtcttt gatctccgtt tcaagcgggc
     3061 agatcgtttg attaattgca accagcagtt tgcctttttc aagggcaagt tgccattttt
     3121 taccctgttg gcttaagtgt tcacgcaacg cttcggcagt ggtaaaagta ggctcaacat
     3181 ctagtctatc cgttgccaca agttcacgca cttgggcgaa aaaaagtatc ttaatcaacc
     3241 ttgaaatctc ctgattttcc gccactttta ctaagtaatc ttacattttc aataatcata
     3301 tctttttgca cggctttaca catatcgtaa atagtcagag cagcaacact agctgcggtt
     3361 aatgcctcca tttccacgcc ggttttgccg gttagtttac agagtgattc aattcgcact
     3421 tggttgcttt ccggcaacgc ctccagttga acttccactt tagaaagcaa taacgggtgg
     3481 cagagtggaa tcagctccca agttctcttc gccgcctgaa taccggcaat tcgagcggtt
     3541 gcgaatacat cgcctttgtg gtgattacca ctgacgatca tttgtaatgt ttcggcattc
     3601 attcgcacaa atgcctccgc tcgggcaatg cgtacggttt cttgtttcat tgaaacatca
     3661 accatattgg cttcgccgtt ttggttgatg tgggtgaagg ttgtcatttg tttgtctctt
     3721 taaatttgat tgtaaaatta atattgagcg tcttcttgtt actttctttg cttgtgcaaa
     3781 gaaagtaacc aaagaaagca caccctactt caccgctatc ttcattttat ttgaatttgt
     3841 ttaacggaaa aatttaaaac tcgccaactt cgttggctca aacactaaat ttttccta
//
LOCUS       DANLRW010000162         3691 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.163, whole genome shotgun sequence.
ACCESSION   DANLRW010000162 DANLRW010000000
VERSION     DANLRW010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3691
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.163"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..571
                     /gene="nfuA"
                     /locus_tag="PXA71_002416"
     CDS             <1..571
                     /gene="nfuA"
                     /locus_tag="PXA71_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010944401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HDL5106476.1"
                     /translation="ISDAAQAHFARLLEQQEEGTNIRIFVVNPGTPGAECGVSYCPPN
                     AVEETDTEFKFNRFSAFVDDISLPFLDEAEIDYVTDPMGSQLTLKAPNAKMRKVADDA
                     PFIERLDYVIQTQVNPQLASHGGKVTLIEITEDKYAVLQFGGGCNGCSMVDVTLKEGI
                     EKQLLAMFPDELVGVKDITEHQHGEHSYY"
     gene            complement(739..2376)
                     /gene="pyrG"
                     /locus_tag="PXA71_002417"
     CDS             complement(739..2376)
                     /gene="pyrG"
                     /locus_tag="PXA71_002417"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005595836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HDL5106477.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLASILEARGLNVTIMKLDPY
                     INVDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFIRSKMSKANNFTSGKIYSEVLRK
                     ERRGDYLGATIQVIPHITNEIKARVLEGGKGRDVAIVEVGGTVGDIESLPFLEALRQL
                     AVDIGREKTLFMHLTLVPYIPTAGEVKTKPTQHSVKELLSIGIQPDVLICRSDRAIPE
                     NEKKKIALFCNVPERAVISLKDVDSIYRIPELLKSQGLDSFVCDRFRLDCKEADLSEW
                     EQVLYCQANPTGEVTIGMVGKYVELPDAYKSVNEALKHAGLTHRLTVNIKYIDSQDIE
                     TKGTELLAGLDGILVPGGFGYRGVEGKIRTAQYARENKIPYLGICLGMQIALIEYARN
                     VAGLTEANSSEFDKDCSQPVIGLITEWQDAEGNVETRSDESDLGGTMRLGSQQCHLIE
                     GSKARELYGAETIVERHRHRYEVNNKLLPQIEAAGLKVSGLSADRKLVEIIEVPNHPW
                     FIAAQFHPEFTSTPRDGHPLFAGFVKAAKDHQESRKA"
     gene            2640..3689
                     /gene="ansB"
                     /locus_tag="PXA71_002418"
     CDS             2640..3689
                     /gene="ansB"
                     /locus_tag="PXA71_002418"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HDL5106478.1"
                     /translation="MKIKKLLLPTLLSIATMPIQAADLPNITILATGGTIAGSQKNTA
                     TSAYQAGQLNIETLIEAVPDIKKLANIKGEQIVKIGSQDMSDEVWLKLAKAINQQCPN
                     TDGFVITHGTDTMEETVYFLDMTVKCEKPVVLVGAMRPATEKSADGVLNLYNSVVVAK
                     DSKSSGRGVLVAMNDIVLGARDVTKTSTTSVQTFNSPNFGALGYIHNSKVDYERSPES
                     KHTVNTPFKVDELTELPKVGIIYAYSNMPTEPLQALLDASYQGIVVAGVGNGNMNAAN
                     LALLEEAAKKGITVVRSSRVPTGYTTRDAEIDDSKYGFIASGTLNPQKARVLLQLALT
                     QTNDIKTIQQYFEDF"
BASE COUNT         1132 a          812 c          717 g         1030 t
ORIGIN      
        1 aatatcagat gcagcacaag cccattttgc cagactatta gaacagcaag aagagggaac
       61 taatatccgt atttttgtgg tcaatcccgg cacaccgggg gcagaatgcg gtgtctctta
      121 ctgcccaccc aatgcagttg aagagacgga taccgaattt aaatttaacc gtttctctgc
      181 atttgtcgat gatattagct taccgttttt agacgaagcg gaaattgatt atgtaaccga
      241 cccaatgggt tcacaactta ccctcaaagc ccctaacgcc aaaatgcgta aagtggctga
      301 tgatgcaccg tttatcgagc gtttagatta tgtgattcaa acccaagtca atccacaact
      361 tgccagccac ggcggtaaag tgaccttaat tgaaatcacc gaagataaat atgccgtgct
      421 acaattcggc ggtggttgta acggttgctc aatggtggat gtgaccttaa aagagggaat
      481 tgagaaacag cttctggcaa tgttccctga tgaattagtt ggtgtgaaag atattaccga
      541 acaccaacac ggtgaacatt cttactatta aaaatactaa aagggataaa tcattgattt
      601 atccctttct tataattaat gagcaagcgg tcaaatttac tcgctttcgc tcgcacttcg
      661 tgccatcagc aaagccgatg ttcaaacgca agcgtttgta caaaaaaatg agtaaattcg
      721 accgcttgtt aagtttgatt aagccttacg actctcttgg tgatctttcg cagctttcac
      781 aaaacctgca aataatggat gaccatcacg cggagttgag gtaaattccg gatggaattg
      841 tgctgctata aaccaagggt gatttggcac ttcaataatt tccactaatt tacgatctgc
      901 cgataaaccg ctcactttta agcctgccgc ttcaatttgt ggtaacagct tattgtttac
      961 ttcgtaacgg tggcgatgac gttcaacaat cgtttccgca ccatataact cacgagcttt
     1021 tgagccttca attaaatggc attgttgtga gcctaaacgc attgtaccac ctaaatctga
     1081 ctcatcgctg cgggtttcca cattcccttc cgcatcttgc cattcggtaa ttaagccaat
     1141 caccggctgt gagcaatctt tatcaaattc agaagaattt gcctcggtta aacctgccac
     1201 attacgggca tattcaatta gggcgatctg catacctaaa cagataccta agtaaggaat
     1261 cttgttttca cgggcatatt gtgcggttcg aattttgcct tccacgccac gatagccaaa
     1321 gccgcccggc acaagaatgc cgtctaagcc tgccaataac tctgtgcctt tggtttcaat
     1381 atcttgtgaa tcaatgtatt taatattcac tgttaaacga tgcgttaaac ctgcgtgttt
     1441 caaagcctca ttcaccgatt tatacgcatc aggtaattcc acatattttc cgaccatacc
     1501 gatagtcact tcgccggttg ggtttgcttg gcagtatagc acttgttccc actctgaaag
     1561 atcggcttct ttgcaatcta aacggaaacg atcgcacaca aaggaatcta acccttgcga
     1621 tttcaataat tccggaatgc gataaatcga atctacatct ttaagcgaaa taaccgcacg
     1681 ctccggcaca ttacagaaaa gggcgatttt tttcttctca ttttccggaa tagcacgatc
     1741 tgaacggcaa attaacacat ccggctgaat accgattgaa agcaactctt ttactgaatg
     1801 ctgagtcggc ttagttttca cttcccctgc ggttggaata taaggcacta aggttaaatg
     1861 cataaacaag gttttttcac gaccgatatc caccgctaat tggcggagtg cttctaagaa
     1921 tggcagtgat tcaatatccc ccaccgtgcc acctacttct acaatggcga catcacgccc
     1981 tttaccgcct tctaacacac gggctttaat ctcgttggta atatgcggaa taacctgaat
     2041 ggttgcacct aaatagtcgc cacggcgttc tttacgcaac acttcagagt aaattttacc
     2101 gctggtaaag ttgttggctt tgctcatttt tgaacggata aaacgctcgt agtgacctaa
     2161 atccaaatcg gtttccgcac cgtcttcggt cacaaatacc tccccgtgct gagttggact
     2221 cattgtaccc ggatcgacat tgatataagg atcaagcttc ataatggtta catttaaacc
     2281 acgagcttcc agaatagatg ctaaagaggc tgccgcaata cccttcccta aagaagatac
     2341 aacaccgcct gtgacgaaaa tataattcgt tgtcattgtg attgcctttg ctgattgatt
     2401 aggttggaaa ttcagaatat cagtttactt cgtaaaaaag aaactatcag gacgggaaag
     2461 tagtttacat caaattacat ttttttgcta atggaaaatc ggcaagcagt cagattaatt
     2521 cttttttcaa taatgccgac taatcttaat taatacacta ttatttgcga tagatcagaa
     2581 ttaacctaca tgtttataga tatcataata cctgtttttc taatactgga gacgatacaa
     2641 tgaaaatcaa aaaattacta ctgccaactc tgttaagcat tgctactatg ccaattcaag
     2701 cagccgacct acctaatatt acaattcttg caactggagg gacaattgcc ggtagccaaa
     2761 aaaatacggc aacctcagct tatcaagctg ggcagctaaa tattgaaaca ctcatagaag
     2821 ccgtcccgga tattaaaaaa ttagcaaata tcaaaggaga acaaatcgtt aaaatcggat
     2881 ctcaggatat gtctgatgaa gtatggctaa aactggcaaa agcaattaat caacaatgcc
     2941 caaacacaga tggcttcgtt attacgcacg gcacagacac tatggaggaa accgtatact
     3001 tccttgatat gactgtaaaa tgcgaaaaac ccgtagtatt agtgggggcc atgcgaccag
     3061 caactgaaaa aagtgccgac ggcgtattaa atttatataa ctcagttgtt gtcgccaaag
     3121 attctaaatc tagtggcaga ggggtgttgg ttgcaatgaa tgatattgta ttgggcgctc
     3181 gcgatgttac aaaaaccagt actacatcag tgcaaacatt taactcacca aactttggcg
     3241 cactaggcta tatccataat agcaaagttg attatgagcg ctctcctgaa agtaaacaca
     3301 ccgtaaacac ccctttcaaa gtagatgaat taacggaatt gccaaaagtc ggcattattt
     3361 atgcttattc aaatatgcca accgaaccgc ttcaagcatt attagatgcg agttatcaag
     3421 gcatcgtggt tgcaggagtt ggcaatggca atatgaatgc ggctaatttg gctttacttg
     3481 aagaagcagc taaaaaagga attaccgtgg ttcgctcgtc tcgagtgcca accggatata
     3541 ctacccgaga tgcagaaatt gatgatagca agtatggttt tattgcttcc ggcacattaa
     3601 atcctcaaaa agctcgagta ttactgcagc tcgccttaac acaaacaaat gatataaaaa
     3661 ctattcaaca atattttgaa gatttctaaa a
//
LOCUS       DANLRW010000163         3687 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.164, whole genome shotgun sequence.
ACCESSION   DANLRW010000163 DANLRW010000000
VERSION     DANLRW010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3687)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3687)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3687
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.164"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>3687
                     /locus_tag="PXA71_002419"
     CDS             <1..>3687
                     /locus_tag="PXA71_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HDL5106479.1"
                     /translation="FDKWALYDVSRYCDQLVPDGMGGQEPRFTCDVWLTEVKTAYDLL
                     NDFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVSGFERSYSARKSRHNAVQVT
                     YSDKTNGYESAIEYVSDDEEIKKHGLNLRQITAFGCTSRGQAHRTGKWILETEKREKE
                     TITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAINGRKVTLDREISIDNASYFT
                     YINGEATHSTIKIQSVNGKEITLDSTPTGLETYGVWSLSTKQISSGLYRSISIVENAD
                     GTNTITALQHEPQKEAIVDNSAHFVETARTLYKAPQINAVEVSTGYDGKLYITGDISS
                     GDGKLTYDIKITKDGNLYQYKKGLSDPNIELSDLPNGDYTVIIYGKNAKGQIVTEKTQ
                     TFTIDRPPAPTGVVVTGGLGQITLEWDWVNEVTQTEIFAAETDNFALAKKIAKVTART
                     YAHTLKGNKVVRYYWLRHTRGINVGPFYQQQGVRGQTAVDLDARLTELNTQLSRNIVN
                     EVFDVAAPARGLELVKTVANLTDKGTKLASSQVYNQADGKLYTWNGTAYSATVAAEDV
                     TGKLSKSKIDTSLISQLTGADNTANLARRLAETAQSNINQEITNRQDAVTAEANNRTK
                     AIQAESANLTKKIQAEATARGAAVTQLQNVDAQQAQLISAVTAKADNALSGLEEEKTA
                     RANADKAESQAREALTARMGAAESNIVTIQRTVANNAQSISEVSQNLNAKIDNINIGG
                     RNLLRDSEFNAYNKWGSPQIEFAENANRRTIKVTSTGTNGPVGIVSSNRHSTSYFQQG
                     ETYTLSLFARGSKALDYLYLMRQDGNNVRLPVINVASETEFNHYKLTFKAPFTTQQGY
                     VLIGFRQTSTEQFVEFHSVKLEKGNVATDWTPAPEDVESAVSAVSADLTSYKQTQAAT
                     DSAQAQQLNQLSVNLTKAETNFNAKITEEKKARVDADKVNADKLTDITSRVANAESTI
                     TNFQSTKANKSEVASIAQQNLQSIWRTDAQSAVDALKIGGANLLVDSEYLTTARWGGS
                     SRVASSQYGDRRLTQVFVTQAGTGHFGVTQGTQKATTRIRQGETYTLSLNAQGTAGFT
                     RTGLNYVYLIREDGGNFRLPTLPLTASLSQRPKVTFTAPWTSNQVRLLIGANGIFEAT
                     DWFAFHSVKLEMGNVATGWTPTAKDIDDKVSAVQSNLTAYQAAQAKADQAKATQISGL
                     TTRMGAAESNLTRTERAVTELNQTT"
BASE COUNT         1166 a          808 c          836 g          877 t
ORIGIN      
        1 tttgataaat gggcgttgta tgacgtctct cgctattgcg atcagcttgt gccggacggt
       61 atgggcggac aagagccacg ttttacctgt gatgtatggc tcacggaagt taaaactgcc
      121 tatgatttat taaatgattt ctgctcggta ttccgtgcga ttccgatttg gaccggcacg
      181 gaagtctccg tgattatcga ccgtcctcgt gatccggttt ggacttatac caacgctaat
      241 gtagtcagcg gttttgaacg ctcatattct gcccgcaaat ctcgccataa tgcggtacaa
      301 gtgacctatt cggataaaac gaatggctat gaaagtgcga ttgaatatgt ctctgacgat
      361 gaagaaataa aaaagcacgg cttaaattta aggcaaatta ccgcctttgg ttgcacctct
      421 cggggacaag cacaccgtac cggtaaatgg attttagaaa ccgaaaaacg agaaaaggaa
      481 accattacct ttaccgttgg acgtgagggc ttaatgcact taccgggcga tattatccgt
      541 gtagccgata gccattatgc cggcacggaa attggcggac gagtgttggc gattaatggg
      601 cgaaaagtta cccttgaccg tgaaattagc attgataacg ccagttattt tacttacatc
      661 aacggtgagg cgacacactc aaccatcaaa atccaatctg taaacggcaa agaaattacg
      721 ctggatagta caccaaccgg cttagaaacc tacggtgttt ggtcgttatc gactaaacaa
      781 atcagctctg gattatatcg ctcaatctcg attgtcgaaa atgcggacgg cacaaacact
      841 atcacagcgt tacaacacga accgcagaaa gaggcaattg ttgataactc cgctcacttt
      901 gtggaaacgg ctagaacact ctacaaagct ccacaaatta acgcagtgga agtctcgacc
      961 ggttatgacg gtaagctcta cattaccggt gatattagct ccggtgatgg caagctaacc
     1021 tatgatatta aaattaccaa agatggcaat ttatatcaat acaaaaaagg cttaagcgat
     1081 ccgaacattg aactaagtga tttacctaac ggcgattata ccgtcattat ttacggcaaa
     1141 aacgccaaag ggcaaatcgt caccgaaaaa acacaaacct ttactattga tcgacctcca
     1201 gctccgaccg gtgtagtagt aacaggtgga ttagggcaaa ttaccctcga atgggattgg
     1261 gtaaatgagg ttacgcaaac cgagattttc gcggccgaaa ccgataattt cgcccttgca
     1321 aaaaaaatcg caaaagtgac cgctagaacc tacgctcaca cactaaaagg taacaaggtt
     1381 gtacgctatt attggctacg tcataccaga ggcattaatg tcggaccgtt ttatcaacaa
     1441 cagggggtaa gaggacaaac agcggttgat ttggatgctc gattaaccga attaaacact
     1501 cagttatcac gcaatattgt taatgaggtt tttgatgttg ctgcaccggc aagaggttta
     1561 gaattagtga aaacagtcgc taatttgacc gacaaaggta ctaaactggc gtcatctcaa
     1621 gtttacaatc aggctgacgg caagctctat acttggaacg gtacagcata ctcagctaca
     1681 gtggctgcgg aagatgttac cggcaaatta tcaaaatcta aaattgatac gtcccttatt
     1741 tcgcaattaa caggtgcaga taacaccgca aatttggcaa gaagattagc ggaaacagct
     1801 caaagcaaca ttaaccaaga gattactaac cgacaagatg ccgttactgc cgaagcaaat
     1861 aaccgtacta aagccattca agccgaaagt gcgaatttaa cgaaaaaaat tcaagctgaa
     1921 gcaaccgctc gtggggctgc tgttacacag ttacaaaatg ttgatgctca acaagcacag
     1981 ttgatttctg ctgtcacagc aaaagctgat aatgctcttt caggcttgga agaagaaaaa
     2041 acagcacgag caaacgccga taaagcggag tctcaagcac gtgaagcatt aacagcaaga
     2101 atgggagcag ctgaaagcaa tatcgtaact attcaacgta cggtagcaaa taatgcccaa
     2161 agcattagtg aagtcagtca gaatttaaat gctaagattg ataatattaa tatcggcggt
     2221 cggaatttat taagagacag cgagttcaat gcgtacaata aatggggtag cccacaaatt
     2281 gaatttgctg aaaatgcaaa tcgccgaact atcaaagtaa cctcaacagg tactaacggt
     2341 cctgttggta ttgtttcatc taatcgccat tccacatctt atttccaaca aggagaaact
     2401 tatacactct cattatttgc tcgaggaagt aaggcactag actatctcta tctaatgcgt
     2461 caagatggga ataacgttag attaccagtg attaacgttg cctctgaaac tgagtttaat
     2521 cattacaaac tcacgttcaa ggctcctttt accacgcaac aaggttatgt cttaatcggt
     2581 tttcggcaaa ccagcacaga gcagtttgtt gagtttcaca gcgtcaaact tgaaaaaggc
     2641 aacgtagcca cagactggac accagcaccg gaggatgtgg agagtgcggt tagtgctgtt
     2701 tcggctgatt taacgagtta taaacaaact caagcggcta ccgattcagc acaagcacag
     2761 caacttaatc agttatctgt gaacttgacc aaagcagaga ctaatttcaa cgccaaaatc
     2821 acggaagaaa aaaaagctcg tgttgatgca gataaagtga atgcagataa actcacagac
     2881 ataacaagcc gtgttgcaaa tgcggaatca actattacca atttccaatc aaccaaagcg
     2941 aataaaagtg aggtggcaag tattgcccag cagaacttac agagcatttg gcgcaccgat
     3001 gcgcaaagtg cggtggatgc cttgaaaatc ggtggtgcaa atctactggt tgatagtgag
     3061 tatttgacga cagcccgttg gggcggtagc tcacgagtgg caagctcgca atatggtgat
     3121 cgtcgcttga ctcaagtgtt tgtgacccaa gcaggcacag ggcattttgg tgtgactcaa
     3181 ggcacacaaa aagccactac gcgtattcgt cagggtgaaa cctatacctt gtcactaaat
     3241 gcgcagggga cggcaggttt tacccgcaca gggttaaact atgtgtacct tatccgcgaa
     3301 gatggtggca attttagatt gccaactttg ccgcttactg catcattgtc ccaacgccct
     3361 aaagtgacat ttactgcgcc gtggacgagc aatcaagttc ggttactgat tggcgcaaat
     3421 ggcatatttg aggcgacaga ctggttcgca tttcacagcg ttaagctcga aatgggtaat
     3481 gttgccacag gctggacacc aaccgccaag gatattgacg acaaagtatc agcggttcag
     3541 tccaacctca ccgcttatca ggcggcacaa gctaaagcag atcaagccaa agctacgcag
     3601 atttcggggc tcacaacccg aatgggggca gcggaaagta acctcactcg caccgaacgg
     3661 gcagtgacgg aacttaatca gacaacg
//
LOCUS       DANLRW010000164         3605 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.165, whole genome shotgun sequence.
ACCESSION   DANLRW010000164 DANLRW010000000
VERSION     DANLRW010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3605
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.165"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..576
                     /locus_tag="PXA71_002420"
     CDS             <1..576
                     /locus_tag="PXA71_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106480.1"
                     /translation="ITLIFGITACFSSLEFDESKQEKINSFLIVGNKLYVVGELHDYE
                     FEHQQVAELNNFLKSLIANKIKSVEANFEVKESKKVEGSYRIILDGKSLTESERSTVM
                     DTFHFNSAQNPSITYQAEGNLVKLANREELLQKFRFKQALEANVRYYKMKSGLQNTAE
                     GALSIVMLPVAVVAVLPFYMFWVGACATYGC"
     gene            587..1072
                     /locus_tag="PXA71_002421"
     CDS             587..1072
                     /locus_tag="PXA71_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HDL5106481.1"
                     /translation="MYSLYLKILSECDWCCDPKTLSTYQQEWLLHEGSLTQKLYDVAT
                     NFNVEVVQEKWIAKNSEKTTACNEDVWSREVLLKDGEKNWIFAQTLVPRSTIENIAQN
                     VLELGNQPIGLWLFSQNPTRTKLEWTQTENGLFARRGVYEIRGYSLEIRELFLETFPY
                     L"
     gene            complement(1110..1979)
                     /locus_tag="PXA71_002422"
     CDS             complement(1110..1979)
                     /locus_tag="PXA71_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HDL5106482.1"
                     /translation="MKNINTQAVGWIGLGQMGEPMAKHLLNSGVNVGVYNRDPAKAEK
                     VVEAGGTLYPSVLELVKAYDVIFLMIADYAAVQQVLSDEVLAELNGKVVVNMSTISPS
                     QNQAVEALLAQHGAEFVEAPVSGSSKVAEAGKLLVLAAGKEETVELLKPLFAAFSTTT
                     FYYGEVGKAGGIKLMINSLLGIFIQAYGEALNFADQYGIPKEKVIEMISGSFMNSPIF
                     QAKVPMYQANEFPPAFMMKHMTKDFNLASEEIAKLGKSYPLIEQATKTYNQANDSGLS
                     EVDMAAIYQFLAK"
     gene            2109..2900
                     /locus_tag="PXA71_002423"
     CDS             2109..2900
                     /locus_tag="PXA71_002423"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDL5106483.1"
                     /translation="MKPTILLYDSGMGGLTIYDEIRKVLPHAHYLYCFDNAFFPYSEK
                     SEAVLIERAVKIVQKIAEKQPLDMVVVACNTASTVVLPALREHFNFPIVGTVPAIKPA
                     AAISETKVIGLLATKGTVARPYVDELIRKYAQDCTVEKIGTTDLVEIVEEKQRSGKVD
                     MNRLQKVVEAWQGKPELDTVILGCTHFPLVKAELQQLLPDVKYFVDPGVGIAKRVLSL
                     LEERKFQQKADFENQAFCTKQSSAFNIKQDVMQNWGFNNLSVIDI"
     gene            3246..>3605
                     /locus_tag="PXA71_002424"
     rRNA            3246..>3605
                     /locus_tag="PXA71_002424"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         1077 a          668 c          778 g         1082 t
ORIGIN      
        1 attacattaa ttttcggcat taccgcttgt ttttccagtt tagaatttga tgaaagtaaa
       61 caagaaaaaa tcaattcatt cttgattgtt ggtaataaat tatatgtggt gggtgaactg
      121 cacgattatg aatttgagca tcagcaagtt gcggaactga ataattttct caaaagccta
      181 attgctaata aaatcaaatc tgttgaggca aacttcgagg ttaaggaatc caaaaaagtg
      241 gaaggtagtt atagaattat tttagatggg aaatcactta cagaaagtga aagaagtacg
      301 gtgatggata cctttcattt taattcagct caaaatccat ctattactta tcaggcggaa
      361 gggaacttgg tgaaattagc caatagagaa gagcttttgc aaaaattccg atttaaacaa
      421 gcgcttgagg cgaatgtgcg ttattacaaa atgaaaagtg gtcttcaaaa tacggctgaa
      481 ggagcgttaa gtattgtaat gttgcctgtt gctgtagtag ctgttttacc attctatatg
      541 ttttgggttg gtgcttgtgc cacttacgga tgttaaataa ctttttatgt attctctata
      601 cctgaaaatt ttatcggaat gcgattggtg ttgtgatcca aaaacacttt ctacctacca
      661 gcaagaatgg cttctgcacg aagggtcact tacccaaaaa ttgtatgatg tcgcaaccaa
      721 tttcaacgtg gaagtagtac aagaaaagtg gattgcaaaa aacagtgaaa aaacgaccgc
      781 ttgtaatgaa gatgtttggt cgcgagaagt gttactgaaa gatggtgaaa aaaattggat
      841 ttttgcccaa actcttgtgc caagatcaac aatcgaaaat atcgctcaaa acgtgttgga
      901 attgggcaat cagccgattg gtttatggct attttctcaa aatcctactc gcaccaaatt
      961 agaatggaca caaacagaga acggtttatt cgctcggcgt ggggtgtatg aaattagagg
     1021 gtattctctg gaaattcgag agcttttttt agaaaccttt ccttatttat aaaaaaatcg
     1081 gttggtaatg acaccaaccg attttcatct tattttgcca agaactgata aattgcagcc
     1141 atatccactt cgctcaagcc tgaatcattg gcttgattgt aggttttagt ggcttgctca
     1201 ataagcgggt aagatttgcc taatttcgca atttcttcgc ttgccaaatt aaaatctttg
     1261 gtcatatgtt tcatcataaa cgcaggcgga aattcattag cttggtacat cggcactttt
     1321 gcttggaaga tcgggctgtt cataaacgag cctgaaatca tttcgattac tttctctttc
     1381 ggaatgccat attggtcggc gaagtttaac gcctcgccat aggcttgaat gaagatgccc
     1441 agtagcgagt tgatcatcaa tttaatccca ccggctttac ccacttcacc ataatagaaa
     1501 gtggtggtac taaaggcagc gaaaagcggt ttgagcaact caacggtttc ttctttaccg
     1561 gcagccagta ccaatagttt acctgcttct gccactttgc ttgaaccgga aaccggagct
     1621 tcaacaaatt ctgcaccgtg ttgggctagt agagcttcta ccgcctggtt ttggcttggg
     1681 gaaatggtgc tcatattcac cactactttg ccgtttaatt cagccaacac ttcatcgctt
     1741 aacacctgtt gcacggcggc atagtctgca atcatcaaga aaatcacatc gtaggctttc
     1801 accaattcca acacagaagg atataatgtg ccgcctgctt caactacctt ttctgctttt
     1861 gctgggtcgc ggttgtaaac gcccacgttc actccgctat ttagcaaatg ttttgccatc
     1921 ggttcgccca tttgccctaa accaatccaa ccgactgctt gtgtattaat gtttttcatt
     1981 atttttctcc ttactgaata aagcaaattg attattgcga ttttccctca tcaagtcaaa
     2041 tagagagaac ttgaatatag caatggaaaa gagtagcatt ttagcactta cttttttgaa
     2101 caataccaat gaaaccaaca attcttttat acgattccgg aatgggcgga ttgacgattt
     2161 acgatgaaat ccgaaaagtg ttaccgcacg ctcactattt atattgcttt gataacgctt
     2221 ttttcccata ttccgagaag tcggaagcag ttttaattga gcgagcggtc aaaattgtgc
     2281 aaaaaattgc agaaaaacaa ccgcttgata tggttgttgt tgcttgtaat acggcaagca
     2341 cagtggttct gccggcattg cgtgagcatt ttaattttcc gatagtagga actgtaccgg
     2401 caattaaacc ggcagcggca atttccgaaa ctaaagtcat cggcttgctc gccactaaag
     2461 gcacggttgc tcgcccttat gttgatgaat tgataagaaa atatgctcag gattgtacgg
     2521 tagaaaaaat tggcacaacc gatttggttg aaattgttga agaaaaacaa cgaagcggta
     2581 aagtggatat gaaccgacta caaaaagtgg tcgaggcttg gcaaggtaag ccggaattgg
     2641 atacggttat actcggttgt acccattttc ccttagtcaa agctgaatta cagcaattat
     2701 tgcccgatgt gaaatatttt gttgatccgg gtgtaggtat tgccaaacgg gtgctaagcc
     2761 ttttggaaga acgcaaattt caacaaaaag ccgattttga aaatcaagca ttctgcacta
     2821 aacaaagttc tgcatttaat atcaaacaag acgttatgca gaattgggga tttaataatc
     2881 tttcggtgat tgatatttaa acaaaacaat ctgttttgat gaaaaaaggt tcagttgagc
     2941 aaaaacttta aaaaagggct tgcactcaat tttaaaatcc ctataatacg cagcacacaa
     3001 cgacgcactg ttgtgaacga tttaaaattg atttccagtg cgtcgtttct ttttgttctt
     3061 taacaattta tcagacaatc tgtgtgggca cttgttgatt gacttgattg aaaaacattt
     3121 ttttaatttt gaagtcttaa taggtgctaa ctagaaattc attactttct tttaacttaa
     3181 ttttaattag gtttaaattt ggaagtgcga ttttatgtca gcagtattga gcgattaaac
     3241 tttttgaatt gaagagtttg atcatggctc agattgaacg ctggcggcag gcttaacaca
     3301 tgcaagtcga acggtagcac ataggagttt gctccttggg tgacgagtgg cggacgggtg
     3361 agtaatgctt gggaatctgg cttatggagg gggataacta ctggaaacgg tagctaatac
     3421 cgcgtaatgt cttaggacta aagggtggga ccatttggcc acctgccata agatgagccc
     3481 aagtgggatt aggtagttgg tgaggtaaag gctcaccaag cccgcgatct ctagctggtc
     3541 tgagaggatg accagccaca ctggaactga gacacggtcc agactcctac gggaggcagc
     3601 agtgg
//
LOCUS       DANLRW010000165         3570 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.166, whole genome shotgun sequence.
ACCESSION   DANLRW010000165 DANLRW010000000
VERSION     DANLRW010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3570
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.166"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            43..1230
                     /locus_tag="PXA71_002425"
     CDS             43..1230
                     /locus_tag="PXA71_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106484.1"
                     /translation="MSALINLFYLYDPWFFHFLRMSFVVGLVACGYLVFQIIKGKSNG
                     IIIPKDSLIAIIALIGFSIIPLLINSTKEIGVLAMYVKMLILFVFGIAIYNVFYHNQQ
                     GKTLFVRDLKIGIAIQWICGVTALLGLPFMVDFLLSSNAMMPRFFGSEQEYRLYNITS
                     SAFFQLSIFYLMLLHFLLAYNKKTDVVNEWFLFLLLCVGLISGRTFLLMSVISIALYF
                     KWKYILPLIAFTALILFLAIVFPENRYVEHALEPVINLLSGTGKVSSSTDNLVKNHLF
                     LPTLNQFISGDGLYYTETGGYYGGSDSGYIRQVLYGGVSYMLACFAFTYYFVRKVAVN
                     WFEGSWIFTLSTIGILAILNIKADTFAFPGLMMLFLMFLSLFGTSGRNVTFFCKNKEA
                     EYV"
     gene            1223..2188
                     /locus_tag="PXA71_002426"
     CDS             1223..2188
                     /locus_tag="PXA71_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005578999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5106485.1"
                     /translation="MFSIIVPSYNRNQEINALLESLKQQTAYNFEVIIVDDCSKIPVS
                     ETLGILNEFNDISTKEKVRELLTRDSLSHIYSYPFDVKVVRNNPNVGAAQSRNVGATN
                     ATQEWLLFLDDDDRFMPEKCERLAAEIANNPTANFVYHPAKCEMVNEGFTYVTKPFKH
                     KSELTKENILKANKIGGMPMIGLKKSLFCKIGGLSDRLRSLEDYDFLLKLLEEPSFEP
                     LYVDEALTYCTFHTKRSSVSTDTTNTEKAIEYIQQTYIKTPEANNFKLNSLYILSYPH
                     VMNLSRKAAGYYFEMFKQTKNIKQLIIALVIFISPKLAINLKRFM"
     gene            2188..2988
                     /locus_tag="PXA71_002427"
     CDS             2188..2988
                     /locus_tag="PXA71_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_162680708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5106486.1"
                     /translation="MKFSVLMSLYIKEQPQYLRECFESLKVQTVQADEIVVCFDGAVT
                     PELEAIVEEYSAILPINAVKFPQNRGLGKTLNDGLTYCKNEWVFRMDTDDICMPERFE
                     KQVAFIEQNPETVIFGGQIAEFGQDIHDLVAYRNVPTTVEEIVRFTRLRCPFNHMTVA
                     YQKSKVLEVGGYQDLQEDYYLWIKLIAQFKQVANLPDLLVYARVGNGMVGRRRGMAQA
                     EAEWRLYKLKNRCQIHDPISGFGIFIMRAIPRLLPVSALKKVYGLLRK"
     gene            complement(3025..3531)
                     /gene="msrA"
                     /locus_tag="PXA71_002428"
     CDS             complement(3025..3531)
                     /gene="msrA"
                     /locus_tag="PXA71_002428"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL5106487.1"
                     /translation="MQNIREIYLAGGCFWGVESFMQRIKGVIKAQSGYANGNTDNPSY
                     QEVCAGSGHAEVVKVTYDANQISLAKLLDYFFKVIDPVSINKQGGDIGIQYRTGIYYT
                     DPQDEPVVTAALAQLQTQFDQPLAVENQMLEQYFPAEEYHQEYLVKNPNGYCHIDIQL
                     MNEILKNQ"
BASE COUNT         1044 a          601 c          721 g         1204 t
ORIGIN      
        1 ttaaacgtaa ttttactcag cgaaattcat aataggtctg aaatgtcagc actcattaac
       61 ttattttatc tttacgatcc gtggtttttc cattttttaa gaatgtcgtt tgtagtcggg
      121 cttgttgctt gtggctattt ggttttccaa ataatcaagg gcaaatcgaa tggcattatt
      181 attcctaaag atagcctgat tgcaattatt gcattaatcg gctttagcat tattccatta
      241 ttgattaaca gtacaaaaga aattggtgtg ctggcaatgt atgtcaaaat gctgattttg
      301 tttgtgttcg ggattgcgat ttataatgtt ttttatcata accaacaagg taaaacttta
      361 ttcgttcgtg atttaaaaat cggcattgct attcaatgga tttgtggtgt gacagcctta
      421 ttaggtttgc cgtttatggt ggatttttta ttatccagca atgcaatgat gccacgtttt
      481 tttggttcgg aacaagaata ccgtttatat aacatcactt cttccgcctt tttccaatta
      541 agcatttttt atttaatgct attacatttt ttattggcat ataataaaaa aacagatgtg
      601 gtgaatgagt ggtttttatt tttattatta tgtgttggtt taatttccgg tagaaccttt
      661 ttattaatgt cagtaataag tattgcactc tattttaaat ggaaatatat attgccactg
      721 attgccttca ctgcgttaat tctatttttg gcgattgttt ttccggaaaa ccgttatgtt
      781 gaacacgcct tagaaccggt aattaattta ttgtccggca ccggaaaagt cagctcttca
      841 accgataatt tagtgaaaaa ccatctgttt ttaccgactt taaatcagtt tatttccggt
      901 gatggtttat attacaccga aactggtggc tattatggtg gatcggattc cggctatatt
      961 cgccaagtat tatatggtgg agtaagttat atgttggcgt gttttgcctt cacttactat
     1021 tttgtacgca aagtggcggt gaattggttt gaaggcagtt ggatttttac cttatccacc
     1081 atcggcattt tagctatttt aaatattaaa gcagatacct ttgctttccc ggggctgatg
     1141 atgctgtttc taatgttctt gtcgctgttt ggaacaagcg gtcgaaatgt aacatttttt
     1201 tgcaaaaaca aagaggctga atatgtttag tattattgtg ccttcttata accgtaatca
     1261 agaaatcaat gcgttgcttg agagtttaaa gcaacaaact gcatataatt ttgaagtgat
     1321 cattgttgat gactgctcaa aaataccggt cagtgaaact ttaggaattt taaatgaatt
     1381 taacgatatt tctactaaag aaaaagtaag agaattactt actagagata gtttatctca
     1441 tatttatagc tatccatttg atgtgaaagt ggtgcgaaat aacccaaatg ttggggcggc
     1501 acaaagccga aatgtagggg caactaatgc cacacaagaa tggctactgt ttttagatga
     1561 tgatgaccgc tttatgcctg aaaaatgcga acgtttagcg gcagagattg cgaacaatcc
     1621 aactgccaat tttgtgtacc acccggcaaa atgtgaaatg gtaaatgagg gttttactta
     1681 tgtcaccaag ccgtttaaac ataaaagtga gctaactaaa gaaaacattc taaaagcgaa
     1741 taaaattggc ggaatgccga tgattggctt gaaaaaatca ctcttttgta aaattggtgg
     1801 attatctgac cgcttgcgat cacttgaaga ttatgatttc ttactgaaat tattggaaga
     1861 accgagtttt gagccattgt atgtggacga agccttgacc tattgtactt tccataccaa
     1921 acgctccagt gtttcaaccg ataccactaa tacagaaaag gctattgagt atattcaaca
     1981 aacgtatatc aaaacacctg aggcgaataa ttttaagctc aattcgcttt atattttaag
     2041 ttatccacac gtaatgaatt tatcccgcaa ggcagccggt tattattttg agatgtttaa
     2101 acagactaaa aatatcaaac aactgattat tgcgttggtt atttttattt cgccgaagtt
     2161 ggcgattaat ttgaaaaggt ttatgtaatg aaattttccg ttttaatgtc gttatacatt
     2221 aaagagcaac cgcaatattt aagagaatgt tttgaaagct tgaaagtaca aactgtgcag
     2281 gctgatgaaa tcgttgtttg ttttgatggt gcagttacgc ctgaattaga ggcgattgta
     2341 gaagaatata gtgcaatttt gccgattaat gcggtgaaat tcccacaaaa tcgaggttta
     2401 ggtaaaacgc taaatgatgg gctaacctat tgtaagaatg aatgggtttt cagaatggat
     2461 acagacgata tttgtatgcc ggaacgtttc gagaaacaag tggcatttat tgaacagaat
     2521 cctgaaaccg tgatttttgg cggccaaatt gctgaatttg ggcaagatat tcacgatctt
     2581 gtcgcttacc gcaatgtacc aaccacggtg gaggaaatcg tcagattcac tcgcttgcgt
     2641 tgcccgttta accatatgac ggttgcttat cagaaatcca aagtgttgga agtcggtggc
     2701 tatcaagatc tgcaagaaga ttactattta tggatcaaac tcattgctca atttaaacaa
     2761 gtggcaaact tgccggattt attagtgtat gcccgagtcg gtaacggaat ggttggcaga
     2821 cgccgtggaa tggcccaagc agaggcagaa tggcgtttat ataaattaaa aaaccgctgc
     2881 cagattcacg atccgatttc aggttttggg attttcataa tgcgtgcaat tcctcgttta
     2941 ttaccggttt cagcactgaa aaaagtgtac ggtttgctca gaaaataaag ctaaaaaaac
     3001 cacagattgc tctgtggttt tttgttattg attcttcaaa atctcattca ttaattgaat
     3061 atcaatatgg cagtagccgt tcgggttttt tactaaatat tcttggtggt actcttcggc
     3121 agggaaatat tgctctaaca tttggttttc cactgccagc ggctgatcaa attgggtttg
     3181 taattgtgca agtgcggcgg ttaccaccgg ttcgtcttgt gggtcggtat aataaatacc
     3241 ggtgcggtat tgaataccga tgtcgccacc ttgtttgtta atgctcaccg ggtctattac
     3301 tttaaagaag taatctagta attttgccaa gctaatttga ttggcatcat aagtcacttt
     3361 taccacttca gcgtgtccgc taccggcaca cacctcttga tagcttgggt tatcggtatt
     3421 accgttggca tagcctgatt gtgccttaat gacaccttta atccgttgca taaaagattc
     3481 cacgccccag aaacagccac cggctaagta aatttcacga atattttgca tattacctct
     3541 ctataattgt aaatttttcg ataaatttga
//
LOCUS       DANLRW010000166         3513 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.167, whole genome shotgun sequence.
ACCESSION   DANLRW010000166 DANLRW010000000
VERSION     DANLRW010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3513
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.167"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..117)
                     /locus_tag="PXA71_002429"
     CDS             complement(<1..117)
                     /locus_tag="PXA71_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entericidin A/B family lipoprotein"
                     /protein_id="HDL5106488.1"
                     /translation="MKKLVLTILAAATFLTACNTVDGVGEDVEKAGDKIQQAA"
     gene            complement(197..1174)
                     /gene="rluD"
                     /locus_tag="PXA71_002430"
     CDS             complement(197..1174)
                     /gene="rluD"
                     /locus_tag="PXA71_002430"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018652666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HDL5106489.1"
                     /translation="MTQQKILTAEITADLLGARLDQALAQLFPDYSRSRIKVWIESDL
                     VKVNGNIVNKAREKVFGGETVEITAEIEEEIRFEPQDIPLNIVYEDDDIIVINKPKDL
                     VVHPGAGNPDGTVLNALLHYYPPIAEVPRAGIVHRLDKDTTGLMVVAKNIPAQTHLVT
                     ALQKRRITREYEAIASGIMTQGGKVDEPMARHPTKRTAMAVHPMGKPAVTHYRIMERF
                     RNYTRLRLRLETGRTHQIRVHMAHIAHPLLGDQLYGGRPRPPKGASDSFLSVLRGFQR
                     QALHATMLRLEHPITGEMMEWHAPLPDDFIELIQALKADYELYKDQLDY"
     gene            1315..2094
                     /locus_tag="PXA71_002431"
     CDS             1315..2094
                     /locus_tag="PXA71_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HDL5106490.1"
                     /translation="MRKFKSLATLVLAGLFVAGCSNSNKELEQSNVQDLYGKGQTYLQ
                     DGDYNSAIRYLEAVGTKGGQYSGLGEQTQLSLIYAQYKVGEYYKALDAAERFARSYPN
                     AANMDYVFYLAGLSNARLSDNFIQDFFGVNRASRAVDNVRNAYGNFQTIVQRYPQSQY
                     AQDAQNWMNYLFNRLAEHELAVVKFYDERNAYVAVVNRIEEMLRFYPNTLATKQALPY
                     LKEAYKQMNIPDAEQKTELLIQEYESKELPNPEKLKYGEQF"
     gene            2167..3198
                     /gene="tsaD"
                     /locus_tag="PXA71_002432"
     CDS             2167..3198
                     /gene="tsaD"
                     /locus_tag="PXA71_002432"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDL5106491.1"
                     /translation="MRILGIETSCDETGVAIYDEDKGLVANQLYSQIDMHADYGGVVP
                     ELASRDHIRKTLPLIQEALKEANLQPSDIDGIAYTAGPGLVGALLVGSTIARSLAYAW
                     NVPALGVHHMEGHLLAPMLEENAPEFPFVALLISGGHTQLVKVDGVGQYELLGESIDD
                     AAGEAFDKTGKLLGLDYPAGVAMSKLAESGTPNRFKFPRPMTDRPGLDFSFSGLKTFA
                     ANTIKANLNENGELDEQTKCDIAHAFQQAVVDTILIKCKRALEQTGYKRLVMAGGVSA
                     NKQLRADLAEMMKKLKGEVFYPRPQFCTDNGAMIAYTGFLRLKNDEQTDLSISVKPRW
                     AMTELPPIN"
     gene            3280..>3513
                     /locus_tag="PXA71_002433"
     CDS             3280..>3513
                     /locus_tag="PXA71_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL5106492.1"
                     /translation="MNNYVISLTSAQERRKHIEAEFGKQNIPFQFFDAITPDLIKEKA
                     KAFNIDISNTNLTKGEIACALSHIALWHLAKQQN"
BASE COUNT         1066 a          748 c          683 g         1016 t
ORIGIN      
        1 tgcagcctgc tgaattttat cgcccgcttt ttcaacatcc tcaccaacac catcaacggt
       61 attacacgca gtcaagaaag ttgcagctgc taaaatagtt aatactaatt ttttcataga
      121 aagctccttt tttgttgttt acttatgaaa acgatttcaa tatagcaact ttacattatt
      181 taagcaacac ctaaacttaa taatctaatt gatctttata aagctcataa tccgctttta
      241 gtgcctgaat caattcaata aaatcatcag gtaacggggc gtgccactcc atcatttcac
      301 cagtaatcgg atgctctaat ctcaacattg tggcgtgtaa ggcttggcgt tggaagcctc
      361 gtaacaccga taaaaacgag tcactcgcac ctttaggtgg gcgaggtcta ccgccataga
      421 gctgatcacc taataatggg tgagcaatat gcgccatatg tacccgaatt tggtgagtac
      481 gccctgtttc taatcttaaa cgtaaacgtg tgtaattacg aaaacgctcc ataatacgat
      541 aatgcgtaac cgccggtttt cccattgggt gaacagccat tgccgtacgt ttagttgggt
      601 ggcgagccat tggctcatca acttttccgc cctgtgtcat aatgccgctg gcaatcgctt
      661 catattcacg ggtaatacga cgtttttgta atgcggttac taagtgagtc tgtgccggaa
      721 tgtttttagc cactaccatt aagcctgtcg tgtctttatc caatcggtga acaatccctg
      781 ctcgaggcac ttctgcaatc ggtggataat aatgtagcaa agcattcagc actgtaccgt
      841 ccggattacc agcccctggg tgaaccacta aatccttcgg tttattaatg acgataatat
      901 cgtcatcttc atacacaata tttagaggaa tatcttgagg ctcaaaacga atttcctctt
      961 ctatttcagc ggtaatttca acagtttcac caccaaatac tttttccctt gctttattca
     1021 cgatattgcc attaactttc actagatcac tttcaatcca cactttaatg cgtgaacgag
     1081 aatagtccgg aaaaagttgt gccagagcct gatctaggcg agcacctagt aaatctgcag
     1141 taatttctgc tgttaaaatc ttttgttgag tcattaaacc ataaatccta attagtcatt
     1201 tgcttacttg cgtgatgtta tatagaatag cgagatgaac ttcataagtt attcttagtc
     1261 agaggacatt gtacattaac ttttcgtcct agacactttt tataggtaaa acatatgcgt
     1321 aaatttaaat ctcttgccac attagtatta gccggactgt ttgttgcagg ttgttcaaat
     1381 tcaaataaag aattagaaca atccaacgtt caagatcttt atggcaaagg tcagacctat
     1441 ttacaagatg gagattataa ttctgccatt cgctacttag aagcggttgg aaccaaagga
     1501 ggccaatatt caggacttgg tgagcaaacc caactaagtt taatttatgc tcaatataaa
     1561 gttggcgaat actataaagc acttgatgcc gcagaacgtt ttgctcgctc ttacccgaat
     1621 gcagctaata tggattacgt attctatcta gcaggattat caaatgcacg tctaagtgat
     1681 aattttattc aagacttctt tggtgtaaat cgcgcctctc gagccgtaga taatgttcgt
     1741 aatgcttacg gtaacttcca aactattgta cagcgctacc ctcaaagcca atatgcacaa
     1801 gatgctcaaa attggatgaa ttacttattt aaccgtttag cggaacacga attagccgtt
     1861 gttaaatttt atgatgaacg taatgcctat gtggctgtag taaaccgtat cgaagaaatg
     1921 ttgcgttttt acccgaatac actggcaacc aaacaagcat tgccatactt aaaagaagca
     1981 tataagcaaa tgaatatccc agatgcagag caaaaaacgg aactcttgat ccaagaatat
     2041 gaaagcaaag agctaccgaa tcctgaaaaa ctgaagtatg gcgaacaatt ctagtcgtac
     2101 agagaataat gtgaggggcg ttcttcgccc cttttggttt tctaacttat tttgacttct
     2161 ccaactatgc gaattttagg tattgaaacc tcttgtgatg aaaccggtgt tgccatttat
     2221 gatgaagaca aaggcttagt ggcaaaccag ctttatagcc aaattgatat gcacgccgat
     2281 tacggtggcg tagtccctga actggcttct cgagaccata tccgtaaaac gttgccacta
     2341 attcaagaag ccttaaaaga ggccaatctg caaccctcgg atattgacgg cattgcctat
     2401 actgccggcc caggcttggt cggggcttta ttggtcggct caaccattgc ccgttcgctg
     2461 gcttatgctt ggaatgttcc ggcattgggc gttcaccata tggaagggca tttacttgcc
     2521 ccaatgttgg aagaaaatgc ccctgaattt ccgtttgtgg cattattgat ttcaggtgga
     2581 cacacccaac tggtaaaagt tgacggcgtt gggcaatacg aactactcgg ggaatcaatt
     2641 gatgatgctg ccggtgaagc ctttgacaaa acaggcaaac tactcggttt ggattaccct
     2701 gccggtgtag cgatgtcaaa attagccgaa tccggcacgc caaatcgttt taaattccct
     2761 cgtccaatga ccgacagacc gggactggat ttcagtttct ccggtttaaa aacctttgct
     2821 gcgaatacga ttaaagccaa tcttaatgaa aatggtgaac tcgatgagca aaccaaatgc
     2881 gatattgccc acgcattcca acaagccgtg gttgatacta ttttaattaa atgcaagcga
     2941 gcgttagagc aaaccggcta taaacgctta gtaatggcag gcggcgtaag tgccaataaa
     3001 caattacgag cagaccttgc ggaaatgatg aaaaaattaa aaggcgaagt attctaccct
     3061 cgcccacaat tttgcactga caacggcgca atgattgcct acactggctt tcttcgctta
     3121 aaaaacgatg aacaaaccga cttaagcatt agcgtaaaac cccgctgggc tatgaccgaa
     3181 ttaccaccga ttaattaacc tttcaagcgg tgaaatttct tgttaatttt gcaaaaattt
     3241 aatcaaaaat aaccgcttgc tatatgatag attaaattta tgaataatta tgtaattagc
     3301 ctaacctccg cacaggagcg tagaaaacat attgaagctg aattcggcaa acaaaatatt
     3361 ccttttcaat ttttcgatgc gattacgccg gatttaatta aagaaaaagc caaagcattt
     3421 aatattgaca tttcaaatac aaacttaaca aaaggtgaaa tagcctgtgc tttgagtcat
     3481 attgcattat ggcatttagc caaacaacag aat
//
LOCUS       DANLRW010000167         3510 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.168, whole genome shotgun sequence.
ACCESSION   DANLRW010000167 DANLRW010000000
VERSION     DANLRW010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3510
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.168"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            276..1820
                     /gene="leuA"
                     /locus_tag="PXA71_002434"
     CDS             276..1820
                     /gene="leuA"
                     /locus_tag="PXA71_002434"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDL5106493.1"
                     /translation="MSNNNIIIFDTTLRDGEQSLKASLTVKEKLQIALALERLGVDVM
                     EVGFPVSSAGDFESVQTIARHIKNSRVAALSRAVAKDIDAAYEALKVAEAFRIHTFIA
                     SSALHVEAKLKRSFDDVVEMAVAAVKRARNYTDDVEFSCEDAGRTGIDNICRIVEAAI
                     NAGATTVNIPDTVGFCLPNEYGNIIHQVMNRVPNIDKAIVSVHCHNDLGMATANSLTA
                     VQNGARQIECTINGIGERAGNTALEEVVMAIKTRQEFMGVDTRINTQEIHRVSQMVSQ
                     LCNMPIQPNKAIVGSNAFAHSSGIHQDGMLKNKNTYEIMSPETIGLKKEKLNLTARSG
                     RAAVKGHMADMGYTETDYDLDKLYEAFLQLADKKGQVFDYDLEALAFIDMQQGDEDRL
                     KLDVITTQLISGLPASAFVQVELDGVRQSATSQGGNGPVEATYNAIMNIVGMELKMSH
                     YNLTAKGEGAEALGQVDIVVEYEGRKFHGVGLATDIVESSARALIHAINAIYRSQKVA
                     DLKAKK"
     gene            2042..2614
                     /gene="rpoE"
                     /locus_tag="PXA71_002435"
     CDS             2042..2614
                     /gene="rpoE"
                     /locus_tag="PXA71_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000003307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HDL5106494.1"
                     /translation="MSEQITDQELVEKAQKGDKKAFNLLVVRYQNRVAGLLTRYVARD
                     DIPDIVQESFIKAYRSLESFRGESAFYTWLYRIAVNTAKNHLTSLGRRPPKEDILAED
                     AESYDVGAQLRESDTPENLILSEELKKVVFDTIENLPDELKTAIRLRELEGLSYEEIA
                     EVMECPVGTVRSRIFRAREAIDAKIKPLMQ"
     gene            2660..3283
                     /locus_tag="PXA71_002436"
     CDS             2660..3283
                     /locus_tag="PXA71_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5106495.1"
                     /translation="MQERITQQNERLSAYMDGQNVDTAFVETLTNSPELQQKWASYHT
                     IRSVMQGDEIILGRDFSAKMEALLENEEIESQANVEKPKGLLLKLKRWGTPIMQAGIA
                     ASVCLVAVLGVNSMNASDEIAQTQQPVLQTLPFSNSVEAVSYNAPVQDQPTEEQLELQ
                     QRKINALLENHELQRRTNNVKNLTLSEEEKQKAQTSSNTESEPNIQK"
BASE COUNT         1175 a          608 c          758 g          969 t
ORIGIN      
        1 aattaatggg ctggtaaacg gttgcgtgaa gagaaaaatg ctattgacat tgatttggat
       61 aaggataata tacacctcaa ctactgaata acaatgcaaa cataaacata caacacaaca
      121 tggaaaaatt taccttactc cgattatctc tgttatcgta ttttgtgcga ggataaagat
      181 tgattggaaa aagtaaatgg actatccaca ttcttgcccg caccttaaaa tgcgggcttt
      241 ttttatcaaa taaaaacacc taaaaagagg cttctatgag caacaataac attattattt
      301 ttgatacgac tttacgtgat ggtgagcaat cattaaaagc aagtttaacc gtaaaagaaa
      361 aattgcaaat tgcccttgct ttagaacgtt taggggttga tgtgatggaa gtcggttttc
      421 cagtttcttc agcgggcgat tttgaatcag tacaaaccat cgctcgtcat atcaaaaaca
      481 gccgggtggc ggcgctttcc cgagcggttg caaaagacat tgatgcagct tatgaagcct
      541 taaaagtagc agaagcattc cgtatccata cctttattgc cagctcggca ttacacgttg
      601 aggctaaatt aaaacgttca tttgatgatg tagtcgaaat ggcggttgca gcggtaaaac
      661 gcgccagaaa ttatactgat gatgttgagt tttcctgtga agatgctggg cgtactggaa
      721 ttgataacat ctgccgcatt gtagaagctg ccattaatgc cggtgcaacc acagtgaata
      781 ttccggatac agtcggtttc tgtttaccga atgaatacgg caatattatc caccaagtga
      841 tgaaccgtgt tccgaatatc gataaagcga ttgtctctgt tcactgccat aacgatttag
      901 gtatggctac cgccaactca ttgacagcgg tgcaaaacgg agcgagacag attgagtgta
      961 ctatcaacgg tattggcgaa cgtgccggta acaccgctct tgaagaagtg gtaatggcaa
     1021 ttaaaacccg ccaagaattt atgggggttg atacccgcat taatacccaa gaaattcacc
     1081 gtgtcagcca aatggtcagc cagctttgca atatgccgat tcagccgaac aaagcgattg
     1141 tcggtagcaa tgcctttgct cactcttcag gtattcacca agacggtatg ctgaaaaata
     1201 aaaatactta tgaaattatg tcgccggaaa ccatcggctt gaaaaaagag aagctgaatt
     1261 taactgcccg ttcaggtaga gcagcggtga aagggcatat ggctgatatg ggttatacgg
     1321 aaacggatta cgatttagat aaactttatg aggccttctt gcaacttgct gataaaaaag
     1381 ggcaagtgtt tgattatgac ttagaagctc ttgccttcat tgatatgcag caaggcgatg
     1441 aagaccgctt aaaattagat gtaattacca cccaactaat cagcggttta ccggcttcgg
     1501 cttttgtaca ggtggaatta gacggcgttc gtcaaagtgc tacatctcaa gggggaaatg
     1561 gtccagttga ggcaacttac aatgccatta tgaacattgt gggaatggag ctaaaaatgt
     1621 cgcactataa tctgactgcg aaaggcgaag gagcagaagc attagggcaa gtggatattg
     1681 tagtggaata tgaaggtcga aaattccacg gtgtgggttt ggcaaccgat attgtggaat
     1741 cttcagcccg agctttaatt cacgccatta atgcgattta ccgttcacaa aaagtggcag
     1801 atttaaaagc gaagaaataa cttatagagc gaaagcataa catagacaag cggtcggatt
     1861 ttttgaaatt tttgcaaaat ttcgctaaaa tccgaccgct tgcttagttt attaagtagg
     1921 ttttatctag gaatgtaaaa aattacacaa tttttcaaat tttttgaact tttgtcataa
     1981 agcacacact aacaaagtgt gcaatggaaa atgacatatt gatatttagg agagtccgca
     2041 gttgagcgaa cagatcaccg accaagaatt agtcgaaaaa gcacaaaaag gtgataaaaa
     2101 agcatttaat ttacttgttg tacgttatca aaatagagta gccggtttgc tgactcgtta
     2161 tgttgcaaga gatgatattc cggacattgt gcaagaatct tttattaaag cctatcgttc
     2221 tttagagtct ttccgtggcg aaagtgcttt ttatacgtgg ctttatcgca ttgcagtgaa
     2281 tactgcgaaa aatcatttaa cctctttagg cagaagaccg ccaaaagaag atattcttgc
     2341 cgaagacgct gaaagttatg atgtaggcgc gcaacttcgt gaaagtgata cgccagagaa
     2401 tttgatatta tccgaggaat taaagaaagt cgtgtttgat acgattgaaa atttacctga
     2461 tgagcttaaa accgccattc gtttaagaga attggaaggg ctaagttacg aagaaatcgc
     2521 agaagtgatg gaatgtccgg ttggtactgt acgttcccgt attttccgag caagggaagc
     2581 gattgatgct aaaatcaagc cacttatgca atagatagaa agattatttt agaagagatt
     2641 taaatcattg gagtcaatta tgcaagaacg catcactcaa caaaatgaac gcctttcagc
     2701 ttatatggat gggcaaaatg ttgatacagc atttgtagaa acattaacta acagccctga
     2761 attacagcaa aaatgggcaa gttatcacac tattcgtagt gtgatgcaag gtgatgagat
     2821 cattttaggg agagatttct ctgctaaaat ggaagcatta ctggaaaatg aagaaattga
     2881 atctcaagca aatgtagaga aacctaaagg cttattgctc aagctcaagc gttggggaac
     2941 tccaattatg caagccggta ttgcagcttc agtgtgctta gttgcggtat taggggttaa
     3001 ttcaatgaat gcgagtgatg aaatagctca aacgcaacaa ccagtattac aaacattgcc
     3061 atttagcaat tcagttgaag cggtaagtta taatgcgcca gttcaagatc aaccaacaga
     3121 agaacagtta gagcttcaac agcgtaagat taatgcgtta ttagaaaacc atgagttaca
     3181 acgccgtact aataacgtta aaaatttaac cttatctgag gaagaaaagc aaaaagcaca
     3241 aacttcttcc aatacagaat cagagccaaa tatacaaaaa taataggtaa aataagttac
     3301 tgaaagccac ataatttatc cataattatg tggctttttg tatgtaaatg tagcgaaaaa
     3361 ataagaaata accaacaagt agcgaaatag tgaaaatttt ttgctaaaat aacctaagtt
     3421 aatttggctt gagaataaat atgcttttta agataaaaaa atacttattg ttgttttggg
     3481 ttatttctgc ctgctataca tttgcttggg
//
LOCUS       DANLRW010000168         3275 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.169, whole genome shotgun sequence.
ACCESSION   DANLRW010000168 DANLRW010000000
VERSION     DANLRW010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3275
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.169"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..591)
                     /locus_tag="PXA71_002437"
     CDS             complement(<1..591)
                     /locus_tag="PXA71_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106496.1"
                     /translation="MKKYLMLCSLWFLSACFNESYDFRGKEFEEPVQAILVESDKIYF
                     IGSTIDAIFDKTLIDNTKASDVIYFLNKLLQSPYGRKISNHLITLAIYDENIQIQYSP
                     QFIAKNLTMSDIQALQKLGFQFSHSKEYLWKSYAGLGGKITQFKNRKEILEKYKFKQP
                     IIAKAKSYQKSIEFSFDDTISVIAAPITIPASIILFV"
     gene            825..1115
                     /locus_tag="PXA71_002438"
     CDS             825..1115
                     /locus_tag="PXA71_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDL5106497.1"
                     /translation="MALRPLHDKVILKREEVETKSAGGIVLTGSAATKSTRGKVIAVG
                     TGRILDNGSVQPLAVKVGDVVIFNEGYGVKTEKIDGEEVLILAEHDILAIVE"
     gene            1184..2824
                     /gene="groL"
                     /locus_tag="PXA71_002439"
     CDS             1184..2824
                     /gene="groL"
                     /locus_tag="PXA71_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011608625.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDL5106498.1"
                     /translation="MAAKDVKFGNDARVKMLKGVNILADAVKVTLGPKGRNVVLDRAY
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIVNE
                     GLKAVAAGMNPMDLKRGIDKAVAAVVEELKAISKPCETSKEIEQVGTISANSDSTVGQ
                     LIAQAMEKVGKEGVITVEDGTGLEDALDVVEGMQFDRGYLSPYFINKPEAGTVELENP
                     YILLVDKKVSNIRELLPVLEGVAKAGKPLLIIAEDIEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIAILTAGTVISEEIGMELEKATLEELGQAKRVVISKDNTTIID
                     GIGDETQIKGRVAQIRQQIEDSTSDYDKEKLQERVAKLAGGVAVIKVGAATEVAMKEK
                     KDRVDDALHATRAAVEEGIVPGGGVALVRAANKVADTLKGDNEEQNVGIKLALRAMEA
                     PLRQIVANAGEEASVVARNVKEGSGNYGYNAGTEQYGDMLEMGILDPTKVTRSALQFA
                     ASIAGLMITTECMITDLPKEEKLDPAAMGGMGGMGGMM"
     gene            complement(2949..3275)
                     /locus_tag="PXA71_002440"
     CDS             complement(2949..3275)
                     /locus_tag="PXA71_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5339 domain-containing protein"
                     /protein_id="HDL5106499.1"
                     /translation="MLKRILGITLCTILVSSNAIASVKTSSLTVAKPTLSKNLPTECE
                     KMFNTANKLVSDAERQPGTHTQVLKMKNKLSLTKQQILKMDSELQQKSCEKGLTALNS
                     LKQKHQ"
BASE COUNT         1042 a          522 c          728 g          983 t
ORIGIN      
        1 tacaaataaa ataatagatg cgggaatcgt aattggtgct gcaatgaccg aaatggtgtc
       61 atcaaagcta aattctatgc ttttctgata acttttcgct ttagcgatta taggttgctt
      121 aaatttatac ttttctagta tttccttgcg atttttaaac tgtgtgattt taccaccaag
      181 acctgcatag cttttccata gatattcttt tgaatggcta aattgaaaac ctaacttttg
      241 tagagcttga atatcgctca tggtgagatt ttttgcaata aattgcggac tgtactgaat
      301 ttgaatattt tcatcataaa tggctaaagt aattaggtga ttactgatct tccttccata
      361 cggactttga agaagtttat tcaaaaaata aataacatct gaagcttttg tattatctat
      421 cagcgtttta tcaaatatcg catcaattgt ggaaccaatg aaataaattt tatctgattc
      481 aaccaaaatt gcttgtacag gttcttcaaa ttcttttcct ctaaaatcat aactttcgtt
      541 aaagcatgcg gagagaaacc atagtgagca gagcattaag tattttttca ttttattatc
      601 ctatcttgaa attaatagtt taaatggtat aagagaattg gggtttttct aaacagaaac
      661 agatttctta ggtatatagt tttatcaaaa atggtcaaat ttgtaaaaaa ttttacaaat
      721 ttgaccgctt gcacttgaaa ctctaaaatc tgcctttata ttgttaggcg ttacgcattt
      781 tgcgtgaagt tttatttatt catttttaag aaaaggaaca tattatggca cttcgtccat
      841 tacacgataa agttatttta aaacgtgaag aagttgaaac aaaatcggca ggcggtattg
      901 ttttaaccgg ttcggcagca acaaaatcaa cccgtggcaa agtaattgca gtaggaacag
      961 gtcgcatttt agacaatggt tctgttcagc ctttagcagt taaagtgggc gatgtagtga
     1021 tttttaacga aggctacggc gtaaaaaccg agaaaattga cggcgaagaa gtgctaattt
     1081 tagcagagca cgatattttg gcgattgtag aataatttcg ttctgcacaa gcggttaaaa
     1141 aagcaaaatt ttttacatat ttcaaataca aaggatttag aaaatggcag caaaagacgt
     1201 gaaatttggt aacgatgcac gcgtaaaaat gttaaaaggc gtgaatattt tagccgatgc
     1261 ggtaaaagta actttaggtc cgaaaggtcg taatgtggtg ttagatcgtg cttatggtgc
     1321 accaacgatt acaaaagacg gtgtgtcggt tgcccgtgaa atcgaattag aagataaatt
     1381 tgaaaatatg ggggctcaaa tggtgaaaga ggttgcctct aaagccaatg atgccgccgg
     1441 tgacggtaca actaccgcaa ctgtattagc tcaagcgatt gtaaacgagg gcttaaaagc
     1501 agtggctgcg ggtatgaacc caatggattt aaaacgtggt atcgataaag cggttgcagc
     1561 agtggttgaa gagttaaaag cgatttcaaa accgtgcgaa acctcaaaag aaattgagca
     1621 agtagggacg atttctgcaa actcagattc aacagtcggt caattaattg ctcaagcaat
     1681 ggaaaaagtg ggcaaagagg gcgtgattac tgttgaagac ggtacaggtt tagaagatgc
     1741 attagacgtg gttgagggta tgcaatttga ccgtggttac ttatcgccat actttatcaa
     1801 taaaccggaa gccggtacgg ttgagttaga aaacccatat attcttttag tggataaaaa
     1861 agtgtctaac attcgtgaat tattaccggt gttagaaggt gttgcaaaag caggtaaacc
     1921 gttattaatt attgccgaag atattgaagg cgaggcgtta gctaccttag tggtgaacac
     1981 tatgcgtggt atcgtgaaag tggcggcagt gaaagcacct ggctttggtg atcgccgtaa
     2041 agcaatgtta caagatattg cgatcttaac tgcaggtact gtgatttctg aagagatcgg
     2101 tatggagctt gaaaaagcaa cccttgaaga gcttggtcaa gcaaaacgtg tggttatcag
     2161 caaagataac accacaatta ttgacggtat tggtgatgaa actcaaatca aaggtcgtgt
     2221 agcacaaatc cgccaacaaa tcgaagattc aacttcagat tacgacaaag aaaaactaca
     2281 agagcgtgta gcaaaattag ccggtggtgt tgcggtaatt aaagtaggtg cggcaactga
     2341 agtggctatg aaagagaaaa aagaccgtgt tgatgatgct cttcacgcaa cccgtgctgc
     2401 ggtggaagaa ggtattgtac cggggggcgg agttgcttta gtgcgtgcag ccaacaaagt
     2461 ggctgataca ctaaaaggcg ataacgaaga gcaaaatgta ggtatcaaac ttgccttgcg
     2521 tgcaatggag gctccattac gccaaatcgt tgccaatgca ggtgaagaag cctcagttgt
     2581 agcccgcaac gtgaaagaag gttcaggcaa ctacggctat aacgcaggta cagagcagta
     2641 cggcgatatg cttgaaatgg gaattttaga cccaactaaa gtgactcgtt cagcacttca
     2701 attcgcggct tctattgcag gtttaatgat cactacagaa tgtatgatta ccgatctgcc
     2761 aaaagaagag aaattagatc ctgccgcaat gggcggtatg gggggaatgg gcggaatgat
     2821 gtaattgccc attgagtgaa caaaagctac tgaaattaat tcagtagctt ttttgttggt
     2881 aacaagtggt taaatttatg ctattttttg caaataaaaa accaagcaag taagcttggt
     2941 tttagcgttt attgatgttt ttgtttaagg ctgtttagtg ctgttaaacc tttctcacaa
     3001 cttttttgct gtaattcaga atccattttt aggatttgtt gctttgttaa agaaagttta
     3061 tttttcattt ttagcacttg agtatgagta ccaggctgtc tttctgcatc agagaccaat
     3121 ttatttgccg tgttaaacat tttctcacat tcagttggca aatttttact taaagtaggt
     3181 tttgcaactg taagtgatga ggttttaaca cttgctatag cattactgga aaccaatatg
     3241 gtacaaagtg ttattcctaa aattcttttt agcat
//
LOCUS       DANLRW010000169         3231 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.170, whole genome shotgun sequence.
ACCESSION   DANLRW010000169 DANLRW010000000
VERSION     DANLRW010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3231)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3231)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3231
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.170"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..382
                     /locus_tag="PXA71_002441"
     CDS             <1..382
                     /locus_tag="PXA71_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDL5106500.1"
                     /translation="QQYLDFYQVNLADDIIQSTWQKVSESENVKGFGAFVDNRMVGFV
                     HIVIHPNTWNLTECCYLEDLFVLAEYRNQGIGKELIEYIYRYAQEKGYNRVYWVTDKN
                     NHQAQQLYNKLANDSGIIQYRKNF"
     gene            412..1479
                     /gene="hisC"
                     /locus_tag="PXA71_002442"
     CDS             412..1479
                     /gene="hisC"
                     /locus_tag="PXA71_002442"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDL5106501.1"
                     /translation="MTISQLSRKNIQALTPYQSARRLGGSGDVWLNANEYALSPNFDL
                     TDRTFNRYPEPQPQAVIEGYARYAGVAPENVLVSRGGDESIELIIRAFCEANDSILYC
                     PPTYGMYAVSADTCGIATKTVPLTADFQLDLAQIKANLEGVKVVFVCSPNNPTGNLIK
                     RSDLFELLQITAGKAIVVVDEAYIEFCPEARLVSELANFPHLAIIRTLSKAFALAGLR
                     CGFTLANAELIGVLQKVIAPYPLPVPVSDIAAQALSPQGIEQMKTRVAEVITLRAELQ
                     KNLENLPLVEQVFDSEANYLLFKCQDGQKVFKALWEQGIILRDQHKALGLQNCIRITV
                     GAREENLRVVEAITALSQFQR"
     gene            1664..2752
                     /gene="hisB"
                     /locus_tag="PXA71_002443"
     CDS             1664..2752
                     /gene="hisB"
                     /locus_tag="PXA71_002443"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018355873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HDL5106502.1"
                     /translation="MQPTLFIDRDGTLIDEPKTDFQIDSLEKLKFEKNVIPALLKLKG
                     KYRFVMVTNQDGLGTSSFPQADFDKPHNAMMALFNSQGIEFDDVLICPHKPEDGCDCR
                     KPHTKLLQKYIDRQLFDPANSFVIGDRATDVQLAENLGIRALQYHPEKLNWDLIAEKL
                     LGEAVTNIGERPKRFAEVIRKTKETDIKVQVWLDETGNNEISTGVGFFDHMLDQIATH
                     GGFRMNITTKGDLWIDEHHTVEDTALALGTALKQAIGDKRGIARFGFVLPMDESRAEC
                     AMDLSGRPFIKFKADFKRDKVGDFSTELTEHFFQSIAFTMLATLHIKAKGDNDHHKIE
                     SLFKVFGRTLRQCIRIEGNELPSSKGVL"
     gene            2847..3131
                     /locus_tag="PXA71_002444"
     CDS             2847..3131
                     /locus_tag="PXA71_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106503.1"
                     /translation="MIREVIDFIKNNKWYVLLVVLLLGLYFYQFHGGLSSDSEKWDHF
                     GSYIGGIFSAVTLLSVLHGMQLERKRFKEQKEEFENDKRVLEKRRRKEDF"
BASE COUNT          973 a          689 c          748 g          821 t
ORIGIN      
        1 gcaacaatat ttagattttt atcaagtgaa tttagcagat gatattattc aatcaacttg
       61 gcagaaagtt tcagagagtg aaaatgtaaa gggatttggg gcttttgttg ataacagaat
      121 ggttggtttt gttcatattg tgattcaccc aaatacttgg aatttaactg aatgctgtta
      181 tttggaagat ttatttgttt tagctgaata tcgcaaccaa ggcataggaa aagaattaat
      241 tgaatatatt tatcgatatg cacaggaaaa aggatataac cgagtatatt gggtaacaga
      301 taaaaacaat catcaagcac aacagcttta taataaatta gctaatgata gcggtattat
      361 tcaatatcga aaaaatttct aaactatgta taaattatac aggaacacaa tatgacaatt
      421 tcacaacttt cccgtaaaaa cattcaagct ctcacccctt accaatcggc acggcgtttg
      481 gggggtagtg gcgatgtgtg gctgaatgcc aatgaatatg ccctttcgcc aaactttgat
      541 ttaaccgacc gcacttttaa ccgctaccct gaacctcaac cgcaggcggt gattgaaggt
      601 tacgcccgat atgcaggcgt tgcacctgaa aacgtgctgg tttcccgtgg gggcgatgag
      661 agcattgagc tgattatccg agccttttgc gaggcaaacg acagcattct ctactgccca
      721 ccaacctacg gaatgtacgc cgtgagtgcc gacacctgtg gcattgcgac caaaactgtg
      781 cctttaaccg ccgatttcca gttggattta gcccaaatca aagctaacct cgagggcgtg
      841 aaagtggtgt ttgtgtgcag cccgaacaac ccgacaggca acttaatcaa gcggtcggat
      901 ttgttcgaac ttttgcaaat caccgcaggc aaagcgattg tggtggtgga cgaagcctac
      961 atcgaatttt gccctgaagc tcgcttggta agcgagctgg cgaatttccc acatttggcg
     1021 attatccgca ccctatccaa agcctttgcc ttggcgggtt tgcgttgtgg ctttaccttg
     1081 gcaaacgctg agctgatcgg cgtgttacaa aaagtgattg ccccgtatcc gctgcctgtg
     1141 cctgtttccg acatcgccgc ccaagccctc tccccacaag gcattgagca gatgaaaacc
     1201 cgtgtggcgg aagtcatcac cctgcgtgcc gaattgcaaa aaaatctgga aaacttaccg
     1261 cttgtagaac aagtttttga cagcgaagcc aactacctcc tattcaaatg ccaagacgga
     1321 caaaaagtct tcaaagcact ttgggagcaa ggcattattt tgcgtgacca acacaaagcg
     1381 ttaggattgc aaaattgcat tcggattacg gtgggggcga gagaggagaa tttgagggtg
     1441 gttgaggcga ttacagcact gagccaattt cagagataga atttaacgag cagtatttta
     1501 agagacattt atagcctagc acggcatagc cgtactaggt tacgcataag tcagtccctt
     1561 tgggactgaa tacagagagg caaagtctct cactaatgct taaccccata tgccttggcg
     1621 tgtggggaga gtaatgaata agatacagat acaggagaaa ccaatgcaac ccaccctttt
     1681 tatcgaccgt gacggcacgt taattgatga gccaaaaacc gattttcaaa tcgacagctt
     1741 ggaaaagctg aaattcgaga aaaacgtgat tcctgccctg ctcaaactca agggcaaata
     1801 ccgctttgtg atggttacga accaagacgg cttaggcacg agttcgttcc cacaggcaga
     1861 tttcgacaaa ccgcacaatg caatgatggc gttgttcaac tcgcaaggga ttgaatttga
     1921 tgatgtgctg atttgtccac acaagcccga agacggttgc gattgccgca aaccgcacac
     1981 caaactgcta caaaaatata tcgaccgcca actgttcgac ccagccaaca gctttgtgat
     2041 tggcgaccgt gctaccgatg tgcaactggc ggaaaacctt ggcattcggg cgttgcaata
     2101 tcaccctgaa aaactgaact gggatttgat tgctgaaaaa ctactgggcg aagccgtcac
     2161 caacattggc gagcgaccaa agcgctttgc cgaagttatc cgtaaaacca aagagaccga
     2221 catcaaagtg caagtgtggc tggacgaaac aggcaacaac gaaatcagca ccggcgtggg
     2281 ctttttcgac catatgcttg accaaattgc cacccacggc ggttttagaa tgaacatcac
     2341 caccaaaggc gacttgtgga ttgacgaaca tcacacggtg gaagacaccg ccctcgccct
     2401 cggcaccgca ttaaaacaag cgattggcga caaacgcggc atcgcccgtt tcggcttcgt
     2461 gttgccgatg gacgaaagcc gtgcggaatg tgcgatggac ttatcaggca gacctttcat
     2521 caagttcaaa gcggatttca aacgcgacaa agtgggcgat ttcagcaccg agctcaccga
     2581 acacttcttc caatccatcg ccttcacgat gctcgccacc ctgcacatca aggcaaaagg
     2641 cgacaacgac caccacaaaa tcgaaagcct gttcaaagtc ttcggcagaa cactcagaca
     2701 gtgcattcgt attgaaggga atgaactacc aagcagtaaa ggtgtattat aatcaccgta
     2761 ggggcgggtt ttaacccgcc cgaaagtgcg gttgaaattt gcaaagtttt tggggatttt
     2821 gaccgcttgt tataaaggat atattgatga ttagagaagt tattgacttt ataaagaata
     2881 ataaatggta tgttctgtta gttgtattgt tattaggatt atatttttat cagtttcacg
     2941 ggggattatc ctcagatagt gaaaaatggg atcattttgg tagctatatt ggtggtatat
     3001 tttctgctgt tactttattg agtgttttgc atggaatgca gttggaacgt aaaagattta
     3061 aggagcaaaa agaagaattt gaaaatgaca aaagagtatt agaaaagaga agaagaaaag
     3121 aagattttta gcgtacattt tttatgatgt tagagcagca taatcttaaa atttcatcaa
     3181 tagaaggtaa tattgataat gtttatgata tgctaattac agcatataga t
//
LOCUS       DANLRW010000170         3176 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.171, whole genome shotgun sequence.
ACCESSION   DANLRW010000170 DANLRW010000000
VERSION     DANLRW010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3176
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.171"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(15..302)
                     /gene="ybgE"
                     /locus_tag="PXA71_002445"
     CDS             complement(15..302)
                     /gene="ybgE"
                     /locus_tag="PXA71_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HDL5106504.1"
                     /translation="MIHKLYNLTAKGLLKALSFILAAVLFATIWVNSTAFALSFGGKT
                     PYLAMLVFYGMAILWVHGIGFEIRAAIWKVIFLPLLGYLIVIPALWILLVK"
     gene            complement(302..400)
                     /locus_tag="PXA71_002446"
     CDS             complement(302..400)
                     /locus_tag="PXA71_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CydX/CbdX family cytochrome bd oxidase small
                     subunit"
                     /protein_id="HDL5106505.1"
                     /translation="MFYVTWVLGVLLAIFFATVITISIEKTGKFDE"
     gene            complement(415..1548)
                     /gene="cydB"
                     /locus_tag="PXA71_002447"
     CDS             complement(415..1548)
                     /gene="cydB"
                     /locus_tag="PXA71_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDL5106506.1"
                     /translation="MIDYEILRFIWWILIAVLLIGFAITDGFDMGVLNLLPIIGKSNV
                     ERRIMINTIAPHWDGNQVWLLTAGGAIFAAWPTVYATSFSGFYIAMVLVLAALFFRPV
                     GFEYRAKIDNPKWRSAWDWGLFIGGFVPSLVFGVAFGNLLQGVPFEFNNINQSQYTGS
                     FFGLLNPFALVCGIISLMMLTTQGATWLQMKTTDELHNNSRKVAQVTASIVLVAFILA
                     GVWLYFKDGFVITSELDHNAQSLLTNKTVAVQAGAWFRNYAEMPVLWVVPALVVVGAL
                     LTIIASKANRSGLAFFSSSLMIVGVILTAAVSMFPFIMPSITHPEMSLTVWDATASHT
                     TLTVMLFVAGIFVPLVLAYTIWSYIKMYGRLDASYLEENKAAY"
     gene            complement(1561..3111)
                     /locus_tag="PXA71_002448"
     CDS             complement(1561..3111)
                     /locus_tag="PXA71_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010945563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDL5106507.1"
                     /translation="MLDVVELSRLQFALTALYHFLFVPLTLGLSFVLVVMETLYVTTG
                     KEVYKDMTKFWGKLFGINFALGVTTGITMEFQFGMNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWERLSKAKHLLATYCVAFGSNFSALWILVANGWMQNPIASEFN
                     FETMRMELSSFSELVLNPVTQSKFLHTVTAGYVCGAIFVLGISSYYILKGRDLGFAKR
                     SFSVGASFGLIAIISVLIMGDESGYEIGKAQPTKLAAMEGEFETQPAPAAWNAFVIPN
                     TAEMKNEFSIHIPYAAGIIATRSLDKEIKGLKDIRVINEQRVRTGMVAYGLLEKLRSG
                     NYTEADKEAFKAVQKDLGFGLLLKQYTPNVVDATEEQIQKAADNTIPNVGPTFWAFRV
                     MMLSGFLMLILITTAFIQNMRGKVESSRFLLRGLLFGLPLPWIAIESGWFLAEYGRQP
                     WAIYEMLPVGVSNSALTTGDLWFTIGLLCGLYTLFLVVEMYLMFKYGRLGPSALKTGR
                     YYFEQSTK"
BASE COUNT         1137 a          657 c          509 g          873 t
ORIGIN      
        1 acataaaaat gcctctattt aacaagtaaa atccataatg ccggaataac aataaggtaa
       61 cctagaagtg gtaaaaaaat cactttccaa atagcagctc ggatttcaaa tccaattcca
      121 tgtacccata aaatagccat accataaaat accaacattg ctaaatacgg cgtttttcca
      181 ccaaaagaaa gagcgaaagc ggtcgaattt acccaaatag ttgcaaataa tacagccgct
      241 aaaataaaag aaagggcttt taacaagccc tttgctgtta agttatagag tttatgaatc
      301 attactcgtc aaacttacct gttttttcaa tgctgatcgt gatgactgtt gcaaagaaga
      361 ttgcaagcaa tacacctaag acccaagtta cataaaacat attgtgtctc cttattagta
      421 agctgcttta ttttcttcta aataactagc atctaaacga ccatacattt tgatatatga
      481 ccaaatagta tatgctaata ctaacggtac aaagatacca gcaacaaata acattacagt
      541 taatgttgtg tggctagcag tagcgtccca aaccgttaag ctcatttctg gatgagtaat
      601 tgacggcata atgaatggga acattgatac tgcagcagtt aaaatcaccc caacaatcat
      661 caatgatgat gagaagaatg ctaaacctga acgatttgct tttgaggcaa taatagtcag
      721 taatgcacct actacaacta atgcaggaac aacccataat acaggcattt cagcataatt
      781 tctaaaccat gcaccagctt gaaccgctac agttttattc gtcaatagag attgtgcatt
      841 atgatctaac tcgcttgtga tcacaaaacc atctttaaaa tataaccata cacctgcaag
      901 aataaatgcc actaatacaa tagaagctgt cacttgtgcc acttttcttg agttgttatg
      961 tagctcatca gtagttttca tttgtaacca agttgcaccc tgtgtggtta acatcattaa
     1021 gctgataata ccgcacacta atgcaaatgg atttaataaa ccaaagaatg aacccgtata
     1081 ttgtgattgg ttaatattat taaattcaaa tggtacacct tgtaataagt taccgaatgc
     1141 aacaccgaat actaatgatg gaacgaaacc accaataaat aatccccaat cccaagcact
     1201 acgccatttc ggattatcaa tttttgcacg atactcaaaa cctacagggc ggaaaaataa
     1261 tgctgcaagc acaagcacca ttgcaatata gaaacccgag aacgaagttg catagactgt
     1321 tggccatgca gcgaagatcg caccaccagc ggtcaataac catacttggt taccatccca
     1381 gtgaggggca attgtgttga tcataatacg acgttcaaca ttacttttac caatgatagg
     1441 taaaaggttt aatacgccca tatcaaaacc atcagtaatt gcaaagccaa ttaacaatac
     1501 cgcaattaag atccaccaaa taaagcggag aatttcataa tcgatcattt ctaactccta
     1561 ttatttagtt gattgttcaa aataataacg gcctgttttt aatgcactag ggccaagacg
     1621 accatatttg aacattaaat acatttctac aactaagaat agtgtatata aaccacacaa
     1681 taagccgatt gtaaaccata aatcacctgt tgttaatgca gagtttgaca caccgacagg
     1741 taacatttca tagatagccc aaggctgacg gccatattcg gcaaggaacc aaccagattc
     1801 aatcgcaatc caaggtaacg gaagaccgaa taacaagcct cttaataaga aacggctact
     1861 ttctacttta ccacgcatat tttgaataaa tgctgtcgta atcaagataa gcatcaagaa
     1921 gccagataac atcattacac ggaatgccca gaatgtaggg cctacatttg gaattgtatt
     1981 atctgctgct ttttgaattt gttcttcagt cgcatcaacc acattaggtg tatattgttt
     2041 taacaataac ccaaagccta aatctttttg tacagcttta aatgcttctt tatccgcctc
     2101 tgtataattg ccagaacgta atttttctaa tagtccgtag gctaccatac cggtacgaac
     2161 acgttgttca ttaattacac gaatatcttt taggccttta atttctttat ctaaagaacg
     2221 ggttgcaata ataccagctg cataaggaat atgaattgag aattcatttt tcatttccgc
     2281 agtatttgga atcacaaaag cattccaagc agctggagca ggctgagttt cgaattcacc
     2341 ttccattgca gctaatttag tcggctgagc tttaccgatt tcataaccag attcatcacc
     2401 cataatcagt acagagatga tcgcaattaa accaaaactt gcacctactg agaatgaacg
     2461 ttttgcaaag cctaagtcac gaccttttaa gatatagtat gaactaatac ctaatacaaa
     2521 aatagcacca caaacatagc ctgcggttac agtatgtaag aatttagatt gtgtaactgg
     2581 gtttaataca agttcagaga aacttgaaag ctccattcgc atggtttcaa agttgaattc
     2641 agaagcaatc gggttttgca tccaaccatt agcaactaaa atccatagtg cagagaagtt
     2701 agaaccaaac gcaacacagt aagttgctaa taaatgtttc gctttcgata aacgttccca
     2761 gccaaagaag aacaagccca caaaggtaga ttctaagaag aacgccatta aaccttcaat
     2821 cgctaatgga gcgccaaaaa tatcacctac ataatgagaa taatatgacc agttcatacc
     2881 aaactggaat tccattgtaa taccagttgt tacccctagg gcaaagttaa taccaaataa
     2941 tttaccccag aatttagtca tatctttata tacttcttta cccgtagtta catacagggt
     3001 ttccatcacc acaaggacga aagaaagacc taatgtaagc ggtacgaata agaagtgata
     3061 gagtgcagtt agagcaaact gcaaacgtga gagttcaact acatctaaca tctcaaacct
     3121 cttatattaa tatactaatt tgacaattag attactgtaa aagtaatcac ccacaa
//
LOCUS       DANLRW010000171         3160 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.172, whole genome shotgun sequence.
ACCESSION   DANLRW010000171 DANLRW010000000
VERSION     DANLRW010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3160
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.172"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..234
                     /locus_tag="PXA71_002449"
     CDS             <1..234
                     /locus_tag="PXA71_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HDL5106508.1"
                     /translation="EDWYRSVTETQRNCVLIKNSAIEDYSINLTANKIQAKNSPIFIA
                     DPFNVLYIDDKKLLKGRDSLLKLVYKTSPYLGV"
     gene            236..1303
                     /locus_tag="PXA71_002450"
     CDS             236..1303
                     /locus_tag="PXA71_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106509.1"
                     /translation="MKFILFDSILERHLGESLKRALESLGHQAVFTDLILHGHSMIYK
                     QADIDFMWKKVKDICDEKADMFISFRPMNLTTEMLEYIGKRMKTAIWLSDDPVLYKTC
                     YSQVVNHYDVLLHCGYKEVMDFYEANNHPKGFNFPFWTDHVAFPSVYNPLHSDYEIAF
                     LGNMNGQVRRKRYMELASLPFTKKVFGLIDSDPLAMHGGFINEAYLHTKRVTEVLSKA
                     KVGVSIPQFFTEYNGLDYDYPELAGLGYFQFPSRVIQYAASGLPIAAVGDERMKEVYP
                     EIFVGNSITELEPYIKQICEDYDFALSESAKILTRFRKNYSALSRAMMLIDLVENLDK
                     LQSQTTQERAILFTKYKAQYN"
     gene            1315..2121
                     /locus_tag="PXA71_002451"
     CDS             1315..2121
                     /locus_tag="PXA71_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106510.1"
                     /translation="MNIKDLLKEISFKAVINDLNFSSCLYIKPNTSKLYVILNGALIK
                     EPRNPLIYHRHSWHLEFDGSVLYIADPTLFKYESINLAWYVGDKDTDLYPYLAEFVTS
                     VATHLNVETDHIVTYGSSGGGFAALQLGARIGNGVVTVCINPQTNIMKYVPSHRNAFL
                     NACFDFNAEEYDSLSNQEKFNALVLLKENTSKILYIQNTQDEFHHKWHFLPFLELKGI
                     DLSEIEKTHWREQQSKDVKVILYSHESGHAAEPKEMIPEILSAVDQLIAS"
     gene            2123..3118
                     /locus_tag="PXA71_002452"
     CDS             2123..3118
                     /locus_tag="PXA71_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5106511.1"
                     /translation="MLFYLVSDSLTRLSLSNESLVDLGRITSIGNYPFLHNAKNAKFL
                     MVESAWQGYKNRWKYKIASYPDNPERTNEKLVRLVEKAKDKGIPTVFWNKEDSVHFDR
                     FIDSAKHFDHIFTVDQNAIARYREVVPATTTVNVGMFPVQPKIHNFQGFNFKHLAANF
                     VGSYSHHIHNKRRERQDMLFGAALKAGLPVTIFDRNSDRKSENYRYPKNSFNLNVQPN
                     VSYTETANIYRDYLVSLNINTVEDSPTMFSRRVVEILACGGILVSTPSMAIDNIFKEY
                     CHIVQSEDEAIELFQRLKRGASRDDLNKAIAGSEFVLSNFTWEHFLSQIQKVVYR"
BASE COUNT         1060 a          481 c          580 g         1039 t
ORIGIN      
        1 gaagactggt acagaagtgt tacagaaact caacgtaatt gtgttttaat taaaaatagt
       61 gctattgaag attattcaat caatcttacg gccaataaaa ttcaggctaa aaattcacct
      121 atctttatag ctgatccatt taatgtgcta tatatagatg ataaaaagtt attgaaaggt
      181 agagattcct tacttaaatt ggtttataag acttctccat atttaggggt ttaatatgaa
      241 gtttatttta tttgattcta ttttagaacg tcatttgggc gaaagtttaa aaagagcttt
      301 ggagtcgtta gggcatcaag cagtatttac agatttaatt ttgcacggcc attctatgat
      361 ttataaacaa gcggacatag atttcatgtg gaaaaaagta aaagatattt gtgatgaaaa
      421 agcagatatg tttatctcat ttcggccgat gaatctaacg acagaaatgc ttgagtatat
      481 aggcaagcga atgaagaccg ctatttggct ttcagatgac cctgttttat ataaaacttg
      541 ctattctcaa gtagtaaatc attatgatgt attattacat tgcggatata aagaagttat
      601 ggatttttat gaagctaata accatccaaa aggctttaat tttccgtttt ggacagatca
      661 tgtagcattt ccaagtgtat ataacccgct tcattctgat tatgagattg catttttagg
      721 taatatgaat gggcaagtta gacgcaaaag atacatggaa ttggcttcat taccatttac
      781 caaaaaagta ttcggtttaa tagattcaga tccattagca atgcatggtg gatttatcaa
      841 tgaagcatat ttacatacaa aacgtgtaac agaggtttta tctaaggcaa aagttggggt
      901 gagtatccca caattcttta ccgaatataa tggtttagat tatgattatc ctgaattggc
      961 gggtttagga tatttccaat ttcctagtcg agttatccaa tatgctgcaa gtgggttacc
     1021 tattgcagcg gttggtgatg agagaatgaa ggaagtttat cctgaaatct ttgttggcaa
     1081 tagtattaca gagctggagc cgtacattaa acaaatttgt gaagattatg attttgcact
     1141 atcagaatcg gctaaaattc taactagatt tagaaagaac tattctgcct tatcccgtgc
     1201 catgatgttg attgatttgg tagaaaattt agacaaacta cagagccaga caacacaaga
     1261 gcgcgcaatt ttatttacta aatataaagc tcaatacaac taggagtaaa ctttatgaat
     1321 attaaagact tacttaaaga gatcagcttt aaagctgtaa ttaatgatct taatttttca
     1381 tcgtgtctat atatcaaacc taatacatca aaattatatg tgatattaaa tggtgcatta
     1441 atcaaagaac ccagaaatcc cttaatttat catagacata gttggcatct agaatttgat
     1501 ggctcagttc tatatatcgc agatccaaca ttatttaaat atgaatcaat taatttggct
     1561 tggtatgttg gagataaaga tactgattta tatccatact tagctgaatt tgtaacttct
     1621 gttgctacac atttgaatgt tgagacagac catattgtta cttatggttc aagtggtggt
     1681 ggatttgctg cattacagtt gggagcaaga attggaaacg gtgtagttac cgtttgtatt
     1741 aatccacaaa ccaacatcat gaaatatgta ccaagtcatc gtaatgcctt tttaaacgct
     1801 tgctttgact ttaatgcgga agagtacgat agtctttcta atcaagagaa atttaatgct
     1861 ttagtattac ttaaggaaaa tacatcaaag attttgtata ttcaaaatac tcaggatgaa
     1921 tttcatcata aatggcattt cctcccattc ctagagttaa aggggataga tctatcggaa
     1981 atagaaaaga cccattggag agaacaacag agcaaagatg taaaagttat tttgtattct
     2041 catgaatcag gtcatgcagc tgaacctaag gaaatgattc ccgagatatt atccgctgtt
     2101 gatcaactga tagctagcta aaatgctgtt ttatttggta tctgattctt taactaggct
     2161 ttcattatca aatgaaagcc tagttgatct tggaagaata acatctatag gaaattatcc
     2221 tttcttgcat aatgcaaaga atgctaaatt tcttatggtc gaatccgcct ggcaaggcta
     2281 caaaaaccgt tggaaatata aaattgcctc ttatcctgat aatcctgaac gaaccaatga
     2341 aaagttggtt cgtttagtag aaaaagcgaa ggataaaggc attccaacgg tcttttggaa
     2401 caaagaagat tctgtgcatt ttgatcgatt tattgattcg gcgaagcatt ttgatcatat
     2461 ttttaccgta gatcaaaatg ccattgctcg ttatagggaa gtagtgcctg cgacaacaac
     2521 cgtcaatgtc ggaatgttcc ctgttcagcc caaaatccat aactttcaag gatttaattt
     2581 taaacacctt gccgcaaatt ttgtagggag ttacagtcat catatccaca ataagcgtag
     2641 agaaagacag gatatgttgt ttggtgcagc acttaaagca ggtcttccgg taaccatctt
     2701 tgatagaaac tctgatagaa aatcggaaaa ttatcgttac ccaaaaaata gctttaattt
     2761 aaatgttcaa cctaatgtta gttatactga aactgctaat atttatcgtg attatcttgt
     2821 ttctttgaat attaatactg tcgaagattc ccctacgatg ttttctcgca gagtcgttga
     2881 aatattagct tgtggaggaa tattagtctc tacaccaagt atggctatcg acaatatatt
     2941 taaagaatat tgtcatatcg tacaaagtga agatgaggct atagaattat tccaacgttt
     3001 aaaacgaggt gcttctcgtg atgatttgaa taaagcgatt gcaggctctg aatttgtatt
     3061 gagtaacttt acttgggaac atttcttatc ccaaatacag aaagttgtat ataggtaact
     3121 taaatagcat tattaaaaac tctctgccaa gaaattattt
//
LOCUS       DANLRW010000172         3156 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.173, whole genome shotgun sequence.
ACCESSION   DANLRW010000172 DANLRW010000000
VERSION     DANLRW010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.173"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..660
                     /locus_tag="PXA71_002453"
     CDS             <1..660
                     /locus_tag="PXA71_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HDL5106512.1"
                     /translation="AMLDLYEVDLRTLKDKSGNAGSVYRFYSGLNELKTSIVWQGRTY
                     DPYPIEATGFERNSSGPSNRPTLTLSNLFGLVTGIANQFDECIGAIVRRHQVYAQYLD
                     AVNFAGGNAKADPNQEIISHFVIEQLSSLTRETATFTLALPIETDNAKIPSRIIMADT
                     CTWIYRSAECGYTGKQYFDEKDKATSDPKADKCSHCLNGCELRGNQRNFGGFVSVNKL
                     G"
     gene            664..1395
                     /locus_tag="PXA71_002454"
     CDS             664..1395
                     /locus_tag="PXA71_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HDL5106513.1"
                     /translation="MELEQQIIDYALQHEPHEMCGFVVFDGNKNRFIPCENQAEDKAN
                     YFEISDLDYIKAEEKGELVAVVHSHPEPNGKPILSVLDRKMQVQTGLDWWLVHNRQIH
                     KFRNVPHLIGREFKHGTMDCYTLYRDAYMLAGYEMDEFERQDDWWHTGQNLYLDNIQG
                     QGFERVETPQIGDVILMQVGADVPNHAAIYIGDQMVVHHSPNRLSKRDLYDGYWLRHT
                     HSIWRHKLADKLDFDGILNDIAVNN"
     gene            1664..2293
                     /locus_tag="PXA71_002455"
     CDS             1664..2293
                     /locus_tag="PXA71_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5106514.1"
                     /translation="MITVKFYGHLKTFGTDFKILVKDIAEAIRALCSQLKGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVVKGAKSGGIFQAVLGVALIGAA
                     FALGPIGLGLVGSATAMTVGAMGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSN
                     LNNLVAQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            2303..>3156
                     /locus_tag="PXA71_002456"
     CDS             2303..>3156
                     /locus_tag="PXA71_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HDL5106515.1"
                     /translation="MRIYGAKGGGGSSHTPIEAPETGRSKQIVNIVELLCEGEIEGLV
                     DGFKSIYLDGTQIQNDDGTYNFNNVSGQLNVGTQDQDVLDGYDSSQNEVNVGVEIKKK
                     NGAIVRTVTDERINRLRLTLGVRSLFHQNNQGDTNTTNVDLKITIGTRQYSHSFNGKY
                     SSQYLESVVFDNLPPVPFNISVERLTEDSNSQRLQNGTIWSSYTEIIDTEFTYPNSAV
                     AGISFDSEYFNNIPTRNYLIKAKKVKVPSNYDPVKRTYTGFWDGTFKVAWTNNPAWEI
                     YDLAPILS"
BASE COUNT          959 a          643 c          724 g          830 t
ORIGIN      
        1 gcaatgcttg atttgtacga ggtggactta cgcacattaa aggataaaag cggtaatgct
       61 ggttcagttt accgctttta ttctgggcta aatgaactca aaacaagtat tgtctggcaa
      121 ggtcgaactt acgaccctta ccccatcgag gcaacaggat ttgagcgtaa cagcagcggc
      181 ccaagcaatc gccctactct tacgctatca aatctgtttg gcttagttac gggtattgct
      241 aatcagtttg acgaatgtat cggtgcgatt gttcgccgtc atcaggttta cgcccaatat
      301 ttagatgcag taaactttgc tggaggtaat gccaaagccg atcctaatca ggaaatcatc
      361 agccattttg tgattgagca actttcaagc ctcacacgag agactgctac ttttacgctt
      421 gcgttgccga ttgaaaccga taatgccaaa atccccagca gaattattat ggcggacacc
      481 tgcacttgga tttaccgctc ggcggaatgt ggctacaccg gcaagcagta ttttgatgaa
      541 aaagacaagg caacatcaga cccaaaagcc gataaatgca gccattgcct gaacggttgt
      601 gaattgcgag gcaatcagcg taattttggt ggatttgtat cggtgaataa attggggtaa
      661 tgaatggaat tggaacaaca aataatcgac tacgccctcc aacacgaacc gcacgaaatg
      721 tgcggctttg ttgtttttga cggcaataaa aatcgattta tcccttgcga aaaccaagcg
      781 gaagacaaag ccaattactt tgaaatatcc gatcttgatt acatcaaagc agaagaaaaa
      841 ggcgaactgg tagcggtggt acattcacat cccgagccaa acggcaagcc tatattatct
      901 gtgcttgatc gcaaaatgca ggtacagacc ggtttagatt ggtggctagt gcataatcgg
      961 caaatccata aattccgcaa tgtaccacat ttaatcgggc gtgagtttaa acacggcaca
     1021 atggattgtt acacgctcta ccgtgatgcc tatatgcttg ccggttacga gatggacgag
     1081 ttcgagcgac aagatgactg gtggcatacc gggcaaaatc tttatttgga taatatccaa
     1141 gggcaaggtt ttgagcgagt ggaaacccca caaatcggcg atgtgatttt aatgcaagta
     1201 ggtgctgatg tgccgaacca cgctgccatt tacattggcg atcagatggt agtccatcat
     1261 agccccaacc gtttatctaa acgtgattta tacgacggct actggttacg tcatacccac
     1321 agcatttggc ggcataaact ggcggataag ttagattttg acggcatatt gaatgatatt
     1381 gctgtaaata actaacaaaa aatgaccgct tgtaacaaaa acaaaccccg aagcgtttgc
     1441 agcacttcgg ggtttttcat atccacttac ctaactaaga ggacataaat tgaatgaatg
     1501 ataaacgatt tacattcaaa tttctaggag ttcttatgga agcaataaat attaccccaa
     1561 aagaaatcag aaaaacaatg tggacagccg caataattct ctttttgttt gcgttcatct
     1621 ggaaagcccc tgaatttatc actgctattc gttggtggta actatgatta cagttaaatt
     1681 ttacggacac cttaaaacat tcggcacaga ttttaaaatt ttagttaaag acatcgctga
     1741 ggcaattcgt gctctgtgtt cacagcttaa aggattgcgt gaagcgttgc gagacggtgt
     1801 ttataaagtc cgtatcggta agcagtattt agacccatca gcccttgaaa aagggctttt
     1861 ttattgcctg aagaaagggc aaaccattca ttttacccct gttgtcaaag gagcgaaaag
     1921 cggtggtatt tttcaagcgg tgttaggtgt ggcgttaatt ggggctgcat ttgcgttagg
     1981 tcctatcggc ttaggattgg ttggctctgc tacagcaatg acagttggag caatgggggc
     2041 atcaatgtta ctaggaggag tttcccaaat gctcaccaaa atgccaaaag cccccacaat
     2101 gggtaatgaa acagaaaaag aaagctcaac ggctttttca aatttaaata acttggtggc
     2161 tcaaggcaaa cctgtgccgt tggcttatgg tttgattcgt accggctcgc tggtgatatc
     2221 gcagggagtt gagacgatca ccattaaaga aaaccaaccg gcaagcaaca agaaaaccgg
     2281 ctttagaaaa taagggataa ttatgcgtat ttacggagca aaaggtggtg gcggcagtag
     2341 ccataccccg attgaagcac cggaaaccgg tcgctcaaaa cagattgtga atattgtgga
     2401 attgctgtgc gagggcgaaa ttgaaggctt ggttgatggc tttaaatcga tttacctaga
     2461 cggcacgcag atccaaaacg atgacggcac ctataatttt aataatgtga gcggtcagct
     2521 aaatgtcggt acgcaagatc aagatgtgtt ggacggttac gatagctcac agaatgaagt
     2581 gaatgtgggt gttgagatta agaaaaagaa tggggctatt gtccgcaccg taactgatga
     2641 acgaattaac cgcttgcgtt taacgttggg agtaaggtca ttattccacc aaaataatca
     2701 aggcgatacc aataccacca atgttgattt aaaaatcacg attggcacac ggcaatattc
     2761 gcatagcttt aacggcaaat acagctcgca ataccttgaa tctgtggtgt ttgataacct
     2821 gccgcctgtg ccatttaata tctcagttga gcgtctaacc gaggatagca attcgcaacg
     2881 cttacaaaac ggtacaattt ggagtagtta caccgaaatt atcgataccg agtttaccta
     2941 ccctaattca gcggttgccg gtatcagttt tgattcggag tattttaata atatcccgac
     3001 ccgaaactac ctaattaaag cgaaaaaagt caaagtgcca agcaattatg atccagttaa
     3061 acgcacttac accggctttt gggacggcac atttaaagtt gcgtggacga acaaccctgc
     3121 ttgggaaatt tacgatttag ctccgatttt aagcaa
//
LOCUS       DANLRW010000173         3134 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.174, whole genome shotgun sequence.
ACCESSION   DANLRW010000173 DANLRW010000000
VERSION     DANLRW010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 3134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.174"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            250..1368
                     /locus_tag="PXA71_002457"
     CDS             250..1368
                     /locus_tag="PXA71_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HDL5106516.1"
                     /translation="MKKTLVALAVTAFAASASATTVYDAEGSKVDFDGSLRIVLDRTN
                     SKELDNHNVVKTKKDAHTGIRNTGSRFGVRVKHDLAQDFYALGRVEFRFNKNTSDDGF
                     GDLYTKRAYVGLGSKQYGELTFGRQVTIADDLSQSVDYNYGINPKGDYIQTDGNQVIR
                     YNYRGVENLHVSANYNFAQDRKDGKVLANKLQNAYGIGALYTVDNWDLRAAYGHTNYK
                     TATDSTKHRKDGVLGSVGYKFGDLKLSVDTGYSREKGLAVTDDNGVTTFYNGVKSNAF
                     YVSPNFEYQVVPASKVYGNYLYERVKSKSNGSTYAAGKEKTHGFLLGVDYQFHKQVVA
                     FVEGSYTRTKDYDKVTNGYEYSGKSTNKAIGVGMRVYW"
     gene            complement(1521..2885)
                     /gene="glmU"
                     /locus_tag="PXA71_002458"
     CDS             complement(1521..2885)
                     /gene="glmU"
                     /locus_tag="PXA71_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012262868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDL5106517.1"
                     /translation="MTQLSVVILAAGKGTRMYSDLPKVLHPVAGKPMVKHVIDTAKQL
                     DAQQIHLIYGHGADLLKARLSEEPVNWVFQAEQLGTGHAMQQAAPFFADDENIVMLYG
                     DAPLITKATLERLIAAKPENGIALLTVELENPTGYGRIIRENGSVVAIVEQKDANEAQ
                     LKVKEVNTGVMVASGASFKKWLKNLNNNNAQGEYYITDVIAMANQEGFKVQAVQATEF
                     MEVEGANNRLQLAALERFYQKREAEKLLLAGVTIIDPSRFDLRGTVTHGKDVQIDVNV
                     ILEGEIKLGNNVKIGAGCVLKNCEIGDNVEIKPYSVIEDSIVGAKSAIGPFSRLRPGA
                     ELAEETHIGNFVEIKKATIGKGSKVNHLTYVGDAEIGKECNIGAGVITCNYDGANKFK
                     TIIGDNVFVGSDSQLIAPVTIASGSTIGAGATVTKDIAENELVISRVPQRHIQGWQRP
                     TKKK"
BASE COUNT          907 a          555 c          603 g         1069 t
ORIGIN      
        1 tttttctgtt aaaaatgagt ggattttctc caaatgaaat aatgtaagta taaccatttg
       61 attttaaaag aaaaaatgcc gtctttgttt tggggtttga actattgaca ttgagttttc
      121 tttttgcaat tattctggcg aaaacaatgt taggcgtttt gctgatacat tgtatcttgg
      181 ataattactc ttacacctta atgagggtaa ttacttatca tataacatat aaaatctaag
      241 gtgaaaatta tgaaaaaaac attagttgca ttagcagtaa ccgcgttcgc agcgtcagca
      301 tcagcaacca ccgtttacga tgcagaaggt tcaaaagtag attttgatgg ttctttacgt
      361 attgttcttg atagaacaaa ttctaaagag ctagacaatc ataatgttgt taaaactaaa
      421 aaagatgcac acacaggaat ccgtaacact ggttcacgtt ttggtgtaag agtaaaacat
      481 gatttagctc aagatttcta tgcattaggt cgtgttgagt tccgttttaa caaaaatacc
      541 agtgatgatg gttttggtga tttatatact aaacgtgctt atgttggttt aggtagtaag
      601 caatatggtg aattaacttt tggtcgtcaa gtaacgattg ctgatgattt aagtcaatca
      661 gtagattaca actacggtat taatccaaaa ggtgattata ttcaaaccga tggtaaccaa
      721 gttattcgtt ataactaccg tggtgttgaa aacttacatg taagtgcaaa ctataacttt
      781 gcacaagatc gtaaagatgg taaagtatta gcaaataaac ttcaaaatgc atacggcatt
      841 ggtgcattat acactgtaga taactgggat ttacgtgcag cttatggtca tacaaactac
      901 aaaacagcta ctgatagcac taagcaccgt aaagatggtg tattaggttc tgttggttat
      961 aaatttggtg acttaaaatt aagtgttgat acaggttatt ctcgtgagaa gggtttagct
     1021 gttacggatg ataatggtgt aactacattc tataatggtg ttaaatcaaa cgctttctat
     1081 gtatctccaa actttgaata tcaagtagtg cctgcatcta aagtatatgg taactactta
     1141 tatgagcgtg tgaaatctaa atcaaatggt tctacatatg ctgctggtaa agaaaaaact
     1201 catggtttct tacttggtgt tgattaccaa ttccataaac aagtagttgc ttttgttgag
     1261 ggttcttata ctcgtactaa agactatgat aaagtaacta atggttatga atactcaggc
     1321 aaatcaacta acaaagctat cggtgttggt atgcgtgtat actggtaatc aattgatttt
     1381 ctaaattgat aaacccctaa caatatttat tgttaggggt tttgttttaa atatattgtt
     1441 cattatcctt tttaaagtgt atggctttgc tgttattggc aaagccaatt tttaaatata
     1501 ataacttttg accactggca ctatttcttt ttagtcgggc gttgccagcc ttgaatatgg
     1561 cgttgtggta cacggctaat taccagttca ttttccgcaa tgtctttagt gactgttgca
     1621 ccggcaccaa tggttgaacc gctggcaatc gtgaccgggg caatgagttg gctgtctgag
     1681 ccgacaaata cgttatcgcc aataatggtt ttgaatttat tcgcaccatc atagttacaa
     1741 gtgattacac ctgctccgat gttacattct ttgccgattt ccgcatcgcc tacataagtg
     1801 agatgattta cttttgaacc tttgccgatg gtagcttttt tgatttccac aaagttaccg
     1861 atatgggttt cttccgctaa ttctgccccc gggcgtaagc gagagaatgg accgatagcg
     1921 gattttgccc cgacaatcga atcttcaatc acagaataag gtttaatttc aacattatcg
     1981 ccaatttcgc agtttttcag tacgcagcct gcaccaattt ttacattgtt accgagtttg
     2041 atttcacctt ctagaatgac attcacatcg atctgaacat cttttccgtg ggtgacagtg
     2101 ccacgaagat caaaacggct tgggtcgata atagttacac cagccaataa cagtttttcc
     2161 gcctcacgtt tttggtagaa ccgttcaagt gcagcaagtt gcaaacggtt gtttgcccct
     2221 tctacttcca taaattcagt tgcctgaacc gcttgtactt taaagccttc ttggtttgcc
     2281 attgcgatca catcagtgat gtaatattca ccttgagcat tgttgttatt taggtttttc
     2341 aaccattttt tgaagctcgc accgcttgct accatcacgc cggtattcac ttctttgact
     2401 ttaagctgtg cttcattggc atctttttgc tcaacaatcg ctaccacaga accattttca
     2461 cgaataattc gtccgtagcc tgtcgggttt tccaattcaa cggttagtaa tgcaatacca
     2521 ttttccggtt tggctgcgat taaacgctct aaagtggctt ttgtgattag gggggcatca
     2581 ccataaagca ttacaatgtt ttcatcatca gcgaaaaaag gagctgcttg ttgcattgca
     2641 tgtcctgtgc ctaattgttc ggcttggaat acccagttta caggctcttc gcttaaacgt
     2701 gcttttaaca gatcggcacc gtgtccgtaa attaaatgaa tttgctgggc atctagctgt
     2761 ttggcagtat caataacgtg ttttaccatg ggtttaccgg caactgggtg taacactttg
     2821 ggtaaatctg aatacatacg agtgccttta ccggcagcta aaataacaac gctcagttga
     2881 gtcatataga atccttattt gactaaatag atgaaggctt atagtaacgt gtaaattgct
     2941 ataagtgata tttttgtaat attttaacct ttttataagt ggatttcatc gacaagcaaa
     3001 agaaatttgt ctgtttgtta tctttttcta ttatgtcgat tcttatcttg tggaaaactg
     3061 gtataaatag gtagcactta tttgtgctat ctctctacaa tagtgtatat ctttgctaaa
     3121 atattaaatt aatt
//
LOCUS       DANLRW010000174         2960 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.175, whole genome shotgun sequence.
ACCESSION   DANLRW010000174 DANLRW010000000
VERSION     DANLRW010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2960
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.175"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(19..498)
                     /locus_tag="PXA71_002459"
     CDS             complement(19..498)
                     /locus_tag="PXA71_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106518.1"
                     /translation="MKRNKVESYTIRLLKNNHTKRYFGEVILNGIKEISTAEMMSEIN
                     AIKAVNKRIEALNKTKAVNLPNYPEIRGHQPIMYNYNFEQIEEDPEQVKPKPSKPKRK
                     PFIPYGLNGYFVDSNGNIRLHLDRRASAETITLETDFFNVLAEMVKRTQEANNAKHA"
     gene            complement(495..854)
                     /locus_tag="PXA71_002460"
     CDS             complement(495..854)
                     /locus_tag="PXA71_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106519.1"
                     /translation="MTTFSIYTSVWHDSSTKGFRHNIKHKRHDCWRADIRIKQKINDV
                     WVQISRIRKRFKCPEQAKSFVEQWKQIDSPAFMQHQINRQALREELSNLEQRKQKQDG
                     ILEVIEYRISQIKELLK"
     gene            complement(858..1364)
                     /locus_tag="PXA71_002461"
     CDS             complement(858..1364)
                     /locus_tag="PXA71_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106520.1"
                     /translation="MKTKYKIIIERAKQQGLTHIELTQKHCLYLATSVGKLCYGVANN
                     AEQHIKLAAGEIFTLLTIINHQIQFDEDLELHTWKASGTTPPEQRAIRMLHHTSQFAW
                     FAPWLVDSNEKEQNQNTIRINLFNKCSGILIELNGILKEYELTLDECLDEFLKNKHCL
                     NEFSIHKE"
     gene            complement(1551..1626)
                     /locus_tag="PXA71_002462"
     tRNA            complement(1551..1626)
                     /locus_tag="PXA71_002462"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1591..1593),aa:Arg,seq:tct)
     gene            complement(1933..2169)
                     /locus_tag="PXA71_002463"
     CDS             complement(1933..2169)
                     /locus_tag="PXA71_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106521.1"
                     /translation="MSNQEFVKLGSVEPSTIDELQKEDIRQAILKSVSITPYYVGLEI
                     AVCQAISAINKFSDGCITEELLDTKNGDKYRKNN"
     gene            complement(2551..2781)
                     /locus_tag="PXA71_002464"
     CDS             complement(2551..2781)
                     /locus_tag="PXA71_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106522.1"
                     /translation="MNAQATLNNHKDYILCGRKEKRTSDFINVFEVFENEATQEFVIE
                     RAMFRNGKLIDWNQSDKMNAEQAQQLWQAYIH"
BASE COUNT          743 a          589 c          558 g         1070 t
ORIGIN      
        1 ccgtatttaa tccattgtct aagcatgttt agcattgttt gcctcttgtg tacgttttac
       61 catttcggca agaacgttga agaaatcagt ttcaagggta attgtttcgg cacttgctcg
      121 tctgtctaga tgtaagcgaa tattaccgtt gctatccaca aagtagccgt ttagcccata
      181 aggtatgaat ggcttgcgtt ttggttttga tggtttaggc ttaacctgtt caggatcttc
      241 ctcaatttgt tcaaaattgt aattgtacat aataggctga tgaccccgga tttcaggata
      301 attaggcaaa ttaacggctt tggttttatt cagagcttca atgcgcttat ttactgcctt
      361 aatagcgtta atttcagaca tcatctctgc cgtgctgatt tcttttatgc cgtttaatat
      421 aacttctccg aagtagcgtt ttgtatgatt attttttaat aagcggatag tatagctttc
      481 tactttattg cgtttcattt cagcaactcc ttgatttggc taatacgata ctcaatcacc
      541 tcaagtattc cgtcttgctt ctgtttgcgt tgctcaaggt ttgataattc ttctcttaat
      601 gcttggcggt tgatttggtg ttgcataaat gcaggtgaat caatttgttt ccattgttct
      661 acaaaggatt ttgcctgttc agggcacttg aagcgtttgc gtatccttga aatctgcacc
      721 cacacatcat tgattttttg ctttatgcgg atatccgctc tccagcaatc gtggcgttta
      781 tgcttaatgt tgtggcgaaa gcctttcgtg gagctgtcgt gccatacact ggtataaata
      841 ctaaacgtcg tcatttttta ctccttgtga atactaaatt cattcaaaca atgcttattt
      901 ttcaagaatt catctaagca ctcatcaaga gttagctcgt attctttaag aatgccattt
      961 agttcaatca gaatcccaga gcatttgtta aataaattaa tcctgattgt attttggttt
     1021 tgttcttttt cattgctgtc cactaaccaa ggagcaaacc aagcaaattg cgaggtatga
     1081 tgtaacatac gtatcgctct ttgctcgggt ggggttgttc cactagcttt ccacgtgtga
     1141 agctctaagt cttcatcgaa ctggatttga tggttaatga tcgttagtag tgtaaaaatc
     1201 tctccagcag caagtttaat atgttgttct gcattattag ctaccccgta gcacagtttc
     1261 cctactgatg tagcgagata cagacaatgt ttttgagtaa gctcaatatg ggtcaaaccc
     1321 tgttgttttg ctcgctcaat aataattttg tatttagttt tcattttgaa tccttttatg
     1381 tggataaaaa aagccccgca cgaggcgggg aaacggagtc attatgttta ttatcaaccg
     1441 ctctttttaa gttgtagcag ttacacaact tagccattca aaaccgctct acacggtagg
     1501 tttccacttc gtaggctcgt catcgatgat gtgcgtaaag cggttttgga tggcgaccgc
     1561 agagagattc gaactctcga cccactgctt agaaggcagc tgctctatcc actgaactat
     1621 gcggtcaaag taccgttgct taaccccaac ggcagggctt acttcaatct aaggaatgtg
     1681 atggactaac catctctaac aactctctag tacattcgtt tcgctgccta acgccgactt
     1741 tagaaaacat taaaactaaa acggggttat ttgtctcact ctctgttgag agctgttaga
     1801 gatggtggct cttttttata cttgtgagcc accgggccaa gtcctcttgt ttgccacaac
     1861 ttcgaggaat ataatacttg ggcaacatct agggctaatg ccgaaaaaat gaaatcactt
     1921 tggtgttatt gattagttat tttttcggta tttatcacca tttttcgtat ctaaaagctc
     1981 ttctgtaata cagccatcac taaatttatt gatggctgat attgcttggc aaaccgctat
     2041 ttccagcccc acataatatg gcgttataga gacggatttt aatattgcct gcctaatatc
     2101 ttctttctgt aattcatcaa tcgttgaagg ttcaacgctg cctaatttaa caaattcctg
     2161 attactcatt ttgttctcct gttattaata ttccaaagca cactttctca aatatgcttt
     2221 ggaattgaac cagcgtttgt gcttcccgat tcactgccag tgcttaacct ttccgctagt
     2281 tcgcacatca ccagtaaatt cgccacaact accgtactat tctttcagtc cgagtagctt
     2341 agagagtttc acaacttgcc tataagttca tttaccgcat acgttttacc gctttatgca
     2401 aagattggtt ctgtctctcc aatgtcatta cattgctaag taatccgctt gtcgtgatgt
     2461 gtttttggtt taatttttaa agaacaatgc ctttcggcga ggtttagaac ctttattcaa
     2521 gccctccgtg aagggctttg ataaaaattc ttagtgaatg taggcttgcc aaagttgttg
     2581 agcttgctcg gcgttcattt tgtcgctttg gttccagtcg attaacttgc catttctgaa
     2641 cattgctctt tcaatcacaa actcttgcgt ggcttcattt tcaaagacct caaacacatt
     2701 gatgaaatca ctggtgcgtt tttctttgcg tccgcataaa atgtagtctt tgtggttatt
     2761 tagcgttgct tgtgcgttca ttttggtttc ctctttgtct gtggcgttgt ttgttttgat
     2821 gggtttatta tcacaaattg aaatcattaa gtcaattcaa tttgtaatta ttttagccaa
     2881 acaaatttca attcgtgatt aaataattga ttttaaagag aaattatttt tagaaaggtt
     2941 gtttgattgc ttgtttttta
//
LOCUS       DANLRW010000175         2888 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.176, whole genome shotgun sequence.
ACCESSION   DANLRW010000175 DANLRW010000000
VERSION     DANLRW010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2888
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.176"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(345..1586)
                     /locus_tag="PXA71_002465"
     CDS             complement(345..1586)
                     /locus_tag="PXA71_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HipA domain-containing protein"
                     /protein_id="HDL5106523.1"
                     /translation="MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWL
                     SSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKP
                     KLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLES
                     SDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEY
                     LAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYE
                     ASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPA
                     YDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEINNWQN
                     VAKEIGIPRQEQEQMKFAFNV"
     gene            complement(1586..1897)
                     /locus_tag="PXA71_002466"
     CDS             complement(1586..1897)
                     /locus_tag="PXA71_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5106524.1"
                     /translation="MVIIMLSKTKSPTLFPKYQNALLQLGENIRLASKRRMFTQTLLA
                     QRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLR
                     K"
     gene            complement(2252..2845)
                     /locus_tag="PXA71_002467"
     CDS             complement(2252..2845)
                     /locus_tag="PXA71_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106525.1"
                     /translation="MKLKALSTLIASSMLYSQSFAVPPEKTAEEPQPFFNKTESGYDL
                     VFNDQNYRLIETELNGEKIQFRAFERIVYVNNPIEPDYQTINLYVPEAYYNNGEINGY
                     QADTAPIFLPNSVGGYMPAKAASYDKKRRDGSPGTILVALSKGYVVASVGARGRTLQK
                     EGKYTGKAPSAIIDSKSAAHKACRFESDHWHHSLCKI"
BASE COUNT          851 a          562 c          529 g          946 t
ORIGIN      
        1 taaatgttag tttttctgat gtctgccatc tgctaggcat tatatatgcc tagattagtt
       61 tcctacattt gcgtttttaa ggctacgctt ccttgcggat atggttgaga aaaaagtcaa
      121 gtgttactaa tggttttata agatgttggt ttgttctggt gtctgccacc gctaggtctt
      181 tataccctag attagtatca ggtctttctg gtgcctgcca ccgctaggcc tttacatcct
      241 agattaatat cagattgaca atgagccaac aactcattgc gttattaagg taacgctact
      301 tttttagaac atagactacg atgattggtt ccacaagtca attactatac attaaatgca
      361 aatttcatct gctcttgctc ttggcgtgga ataccaattt cttttgcgac attttgccaa
      421 ttattaattt ctttcagtac ttcatcataa atctgtacgg cttgttgctt agataattga
      481 aaaaagtcag caacatcaaa ggcgagctga taatccaatc ggttatcgct gtctgttatg
      541 tttaaatgta atccttgaga tagtggtact gggtttaaat cgtatgcggg agataatatc
      601 cacccctctt gagcgtagat aaatccgtgg ttacgcaaat gatcatcagt attcgaaata
      661 gcaatattga atacaattct tctccatagt tgagccaagt caattcgagt atttgaacca
      721 ctttctgtta aaaattgagc aatctcaagg tagcttgcct catagtctcc gtcataataa
      781 cccagctggg ttaatgctga cgtaaaatgg cgacgttttc cacaatgtcg atcaaatctt
      841 tgtgtcaaaa aagtatggtg ttcttggtta aagcgttcaa ttctacaagt agccatttca
      901 attttggctt gaatagccag tcgataagct aaatattccc aaagagcaat atcataatca
      961 tcgtaccgac ttggaaattt ggcaatccat agttgattta gttcatctat taccgaagct
     1021 tttggtctag ctccgcctag tgacgaccct ggtgatatca acatatgaag ccattttaaa
     1081 taatccggat cgtccacatt atcactgctt tcaagttgta ttgctgcaaa ttctaattct
     1141 cttaaggaag acagtggtgg tgctgcaaga cgagtattat tgtccaaaaa tggaccattc
     1201 aattcagttt taaaacgtaa agcccccatt ctattcatat cgtgtacgcc taaaaggtaa
     1261 tcactttcta ttagtaactt aggtttacga ttctcttgac tagctagagc tgcctcccga
     1321 cgtttcatta acaatctacc ccatctatca gggcaagaat ctaaaaagat atgaaaattt
     1381 tgtgtatctg tactgtattg ctctccaggg taaaggtata agttaggatc aatctgctgt
     1441 acatagggtg aacttaacca ctcgttatcg tagctaaaac ggaaattttc tttgcctctc
     1501 actacatcag aagaaagcac cccaactaat tcaggctgtg aaaaagtttc ccaatctgca
     1561 aacacataaa ttcgtttatt catcattatt tccttaataa ttcaatatct tgcaatttac
     1621 gtcctaactc atcatccttt ccaacatcag tgaaatcttg ttctagaccg agaacaccta
     1681 aaaccattag gtagtatcca atcgcaacag ttggatcacc attcataatt tttctcactg
     1741 ttacacggct aagcccagtt ctttgagcca ataatgtttg agtaaacatt ctcctttttg
     1801 aggctagcct aatattttct ccaagttgaa gcaaggcatt ttggtactta ggaaacagag
     1861 ttggtgattt tgttttactg agcattatta ttaccatttt tatgtttttt ggaaattata
     1921 atatccattt atagcaattg caagagcagt tatgtaaaca gtaaaatagg tagagagggt
     1981 ttttcggaaa aaaatatctg gtgaagtttt gactaaattt gaattaaaag aaaaaataga
     2041 ttttttcaaa taaaatcaat ctaaaaaatg attttcaggc tttacaaact tgaaagaatg
     2101 tgtaagatct agaacgtctg aaattcggac ggaaaatccc aatggatgta ttggctggat
     2161 acatcgtagt aactgtgtat ttgcgaatat gatttgaaca atcctacaca aacgattcaa
     2221 aattcaaatg cttacagcaa actatgtaaa actaaatttt acatagtgag tggtgccagt
     2281 ggtcggactc gaaccgacac gctttatggg cggcggattt tgaatcaata atggcagaag
     2341 gtgctttgcc ggtgtatttt ccctcttttt gtagcgtgcg tcctcttgct cccacacttg
     2401 ccaccacata gcctttagat aacgccacca aaatcgtacc tggtgaaccg tcacgtcttt
     2461 ttttatcata acttgccgct tttgccggca tatagccccc cactgaattt ggcaagaaga
     2521 tcggggcggt atccgcttgg tagccattga tttcgccatt attgtagtaa gcttccggca
     2581 catacagatt aattgtttgg taatctggct caatcggatt gttcacatac acaatccgct
     2641 caaaggcacg gaattggatt ttctcgccat ttaattccgt ttcaattaaa cgatagtttt
     2701 gatcattaaa gactaaatca tacccagatt cggttttatt gaaaaagggc tgtggctctt
     2761 cagctgtttt ttccggcggt acagcaaaac tctgactata tagcattgaa gaggcaatga
     2821 gtgtagataa ggcttttagc ttcatttttt gtcctttatg aaatatgaat cggtacaaca
     2881 agcggtcg
//
LOCUS       DANLRW010000176         2841 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.177, whole genome shotgun sequence.
ACCESSION   DANLRW010000176 DANLRW010000000
VERSION     DANLRW010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2841
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.177"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..665)
                     /locus_tag="PXA71_002468"
     CDS             complement(<1..665)
                     /locus_tag="PXA71_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL5106526.1"
                     /translation="MRSMFKKFFGKNKSQSAVKSDTIFSIEQDNEGWLYPEKASQLLN
                     TELRQKYLGLLWQQVSMNRQMFEVLYQQPIERYAEMVQLLPASESHHHSHIGGMLDHG
                     LEVIAFSAKVRQSYILPPNVAPEEQSKQRDAWTAAAIYLALVHDIGKVVVDIEITLKD
                     GSRWFAWNGQPPQPYKFKYIKGRDYHLHPVLGGFLANQLIPKSAFDWLGQYPEVISSL
                     MYA"
     gene            complement(769..1233)
                     /locus_tag="PXA71_002469"
     CDS             complement(769..1233)
                     /locus_tag="PXA71_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArdC family protein"
                     /protein_id="HDL5106527.1"
                     /translation="MMNTQQPKFDLYQHITDRIIAALEQGTAPWLKPWSHPECNMALP
                     RNAVSNRLYSGINTLLLWIATAEHGYKQCKWITAKKANELGGYIRKGEKATVVMNYRP
                     NEREKLDEEGNIVYDEEGNPEMEQHFFIAKHNLFNLDQCENLPAELYDPVIP"
     gene            1442..1705
                     /locus_tag="PXA71_002470"
     CDS             1442..1705
                     /locus_tag="PXA71_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme-like superfamily protein"
                     /protein_id="HDL5106528.1"
                     /translation="MRPVTRNNRGTSFDPRHNKYINTLATALLARWHIEQFSERNIPV
                     NDENLYMAHNIGLDGFHRALLGQSTRKDIENMRKNGMKPWMSI"
     gene            complement(1789..2814)
                     /locus_tag="PXA71_002471"
     CDS             complement(1789..2814)
                     /locus_tag="PXA71_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03752 family integrating conjugative element
                     protein"
                     /protein_id="HDL5106529.1"
                     /translation="MTAGDTPHDTLKTLVGALKDTREEARKANERGDRFEQEVLRLQA
                     REAEVDSRIAGEVESRVESRLAAAWDGFNRQIEELKGRVQSGNQQQKEAEAIPVGGAS
                     SGFGTESAGQTGNVDNNGIRWVDPDDMVVTDEQGKPVTGNYSGKTKTGFPSPFKAEGE
                     SSNTGTALNNNAGTENMTGNTQIQQIKRTPYYTIPENSTLMGSTAMTALLGRVPIQGA
                     VTDPFPFKVLIGRENLIANGIDLPDVEGAIVSGTSTGDWTLSCVRSEVTSITFVFADG
                     RISNGRASGESRAVKRNQASNLTPFCLTVSLSGFNDIPHSDGNPGFLTMSAVDYVDVY
                     LMSHLAR"
BASE COUNT          792 a          637 c          554 g          858 t
ORIGIN      
        1 attgcataca tcagtgaaga aatgacttct ggatactgtc ccagccaatc aaacgcagac
       61 ttgggaatga gctgatttgc aaggaatcct cctagcacgg gatgaagatg gtagtctcga
      121 cctttgatgt atttgaattt ataaggttga ggtggctgtc cattccaagc aaaccaacga
      181 gagccgtctt taagagtgat ttcaatatca accacaactt tgccaatatc atgaaccaag
      241 gcaagataaa ttgcggcagc agtccaagca tctcgttgct ttgattgttc ttcgggagct
      301 acattcgggg gcaaaatata gctttgacga actttagctg aaaaagcaat aacttctaaa
      361 ccgtgatcaa gcattccacc gatatgtgaa tgatggtgtg attcagaagc tggtaatagt
      421 tgaaccatct cagcgtaacg ttctattggc tgctgataaa gtacctcaaa catttgacgg
      481 ttcattgata cctgttgcca aagtagccca agatattttt gtcgtaattc tgtattaagt
      541 aattgagagg ctttttccgg gtataaccac ccttcattat cttgctcaat agaaaaaata
      601 gtatcggatt tgaccgcact ttgagattta tttttaccaa aaaatttttt gaacattgaa
      661 cgcattggaa gagaccgaaa atatgaatgc tgtattgaat gaaagccgtt tagccctttg
      721 cccttttggg taagaccttt ccccttggaa aggttactct tatccccctt aggggattac
      781 aggatcgtac agttccgccg gtaaattttc acactggtct aaattgaaca gattgtgctt
      841 agcaatgaaa aagtgttgtt ccatttccgg atttccttcc tcgtcataca caatatttcc
      901 ctcctcatcg agtttttctc tctcattagg acggtagttc atcacaacag tagctttttc
      961 ccctttacgg atatatccgc cgagttcatt ggcttttttc gccgtaatcc acttacactg
     1021 tttgtagccg tgttcagcgg tagcaatcca aagcaataac gtattgatac cggaatacag
     1081 acggttagaa accgcattgc gaggtaatgc catattgcat tccggatggc tccacggttt
     1141 taaccacgga gctgtacctt gttccaatgc agcaatgatt ctatcagtaa tatgttggta
     1201 taaatcaaat ttaggttgtt gagtgttcat catgtgtttc tccaaagttt gggtaaaaaa
     1261 atggggaaac acggttaccc tatggggaac ttgtttcccc gatgggtagt ttataaaatt
     1321 tcaatggcca caatttttct agaatcatca aagccaacag aactgcctat ggcgtagtaa
     1381 ttacgaatag tctgttcatc ggcattgatt agcagatacc tatcgaggaa gagagattgg
     1441 gatgagaccg gtaacgagaa ataatcgtgg aaccagtttt gaccctcgtc acaataaata
     1501 catcaataca ttggcaaccg cattattggc acgttggcat attgagcaat tctctgagcg
     1561 taatatccca gtcaatgatg aaaatctcta tatggctcac aatattggct tagatggttt
     1621 ccatcgagcg ttattagggc aatctactcg taaagacatt gagaatatgc gtaagaatgg
     1681 gatgaaacct tggatgtcca tttagctctg ttttcaaatg acctaatcca gtttgttccg
     1741 gagagagtac cgaaattttg cactctttca tccgtggtgt atcaaacttc aacgtgctaa
     1801 atgagacatt aaatatacat caacataatc taccgcactc atcgttaaga aaccgggatt
     1861 cccatcagaa tgaggaatat cgttaaagcc cgataaggag acggttaaac aaaatggtgt
     1921 taaattactt gcttgatttc gtttcacagc tctgctttct ccactcgctc gcccattcga
     1981 aatacgaccg tctgcaaaca caaaggtaat gctcgttacc tcagaacgaa cgcaagatag
     2041 cgtccaatct ccggttgatg taccggatac aatcgccccc tcaacatcag gtaaatcaat
     2101 gccattggca attaaatttt ctcgcccgat taatacttta aacggaaacg gatctgtcac
     2161 agcaccttga ataggtacac ggcctaacaa tgccgtcatc gcagtagaac ccattaaagt
     2221 cgaattttcg ggaatagtgt aataaggtgt acgctttatt tgctgtatct gagtattacc
     2281 agtcatattt tctgtcccag cattattatt taatgctgtc ccagtatttg aactttcccc
     2341 ctctgcttta aaagggcttg gaaagccggt ttttgttttc ccggaataat tgcctgtaac
     2401 cggtttacct tgttcatcgg ttaccaccat atcatcagga tcgacccagc gaatgccatt
     2461 gttatctaca ttccctgttt gtcctgctga ttcagtccca aagccagaag aagcccctcc
     2521 tacagggatt gcctctgctt ctttctgctg ctgattacca ctttgaaccc gacctttcag
     2581 ttcttcgatt tggcgattaa atccatccca agcagcagcc aaacggcttt ctacacgact
     2641 ttctacttca cccgcaatac gagaatccac ttcggcttct cttgcttgta agcgtaatac
     2701 ctcttgctca aagcgatcac cacgctcatt tgctttacga gcttcttcac gagtatcttt
     2761 taatgctcct accaacgttt ttaatgtatc gtgaggcgta tctcctgcag taatacctaa
     2821 tgtattcgcc tcctcatcac t
//
LOCUS       DANLRW010000177         2831 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.178, whole genome shotgun sequence.
ACCESSION   DANLRW010000177 DANLRW010000000
VERSION     DANLRW010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2831
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.178"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            42..2036
                     /gene="malQ"
                     /locus_tag="PXA71_002472"
     CDS             42..2036
                     /gene="malQ"
                     /locus_tag="PXA71_002472"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005710277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HDL5106530.1"
                     /translation="MKEYASPSAFEKIERLLNTDNDLQKNNQILPLVKVITQPNAEQQ
                     AVEISLNFTNVAKWQIVLENGEVRNGEIKAEQSVLTLPADLPLGYHQLSISTENDEES
                     CSLIVTPPKAFQPKPLEERKKLWGAFLQLYTLRSDNNWGIGDFGDLKQFLANISDYGA
                     DFVGLNPIHALFPADPDAASPYSPSFRLWQNIIYIDVSAVEAFQQSEQAQQWFHTKET
                     QQQLAELRAKDFVDYSQVAQLKLKALQFAFEHFSQSSQQQSQTAFDAFIEQAGEPLKI
                     QATFDALHHWISSEFGEKGGWTNWAEEYQSYYSPKVAEFQISQATQIRFYMWLQFVAN
                     QQLAECNRFAQSLSMPIGFYRDLAVGVTQSGAETWADKALFVQEASIGAPPDMLAPNG
                     QSWGLSPMHPHILQSRGYQPFIDLVRANMKHCGALRIDHILGFARMWWVANGESAKEG
                     IYVRYPLEDLLSILALESQRHQCLVIAEALGIVPEGILDSLEQKGIFAYNVFYFEKAE
                     NAFKPLENYPYQAMTTLSTHDLPTIQGYWKGYDFELGEKFDTYPSKAVLRKLKEERSY
                     DRLNIRNAVEKVIALEPNEVGVTIKFTHQLQRYVAHTHSALFGTQPEDWLNMLEPVNI
                     PGTSTEYPNWRRKLSATTEQIFANKDIQQLLKDINEIRKG"
     gene            complement(2104..>2831)
                     /locus_tag="PXA71_002473"
     CDS             complement(2104..>2831)
                     /locus_tag="PXA71_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HDL5106531.1"
                     /translation="CSSFSTKLKQEFFSGWTTFEASWLIVFLAIQIGIFIYQPDTWIA
                     TIAAITGILCVVFVGKGKISNYLFGLISVSLYAYISYTFQLYGEMMLNLLVYVPVQFI
                     GFYFWRKNMTSENTVNNAGVEEVIAKALTAKQWVIVAITTIIGTFLYIELLKYLGSAL
                     AILDGATVVISIVAQILMVLRYREQWALWIIVNIMTISLWTAMYFQNGETSLPLLVMY
                     VMYLCNSIYGYYNWIKLHRKHQQ"
BASE COUNT          900 a          603 c          564 g          764 t
ORIGIN      
        1 caaacaaaca aaatacagct cactattttt actccccaaa tattaaagag tatgccagcc
       61 cctctgcttt tgagaaaata gagcggcttt taaataccga taacgatttg caaaaaaata
      121 atcaaattct accgcttgtt aaagtgatta ctcagccaaa tgccgagcaa caagcggtcg
      181 aaatttcgct gaattttaca aatgtagcaa agtggcaaat tgtgcttgaa aatggtgagg
      241 ttcggaacgg tgaaattaag gcagagcaat cagttctaac cctgcctgcc gatttgcctt
      301 taggctatca tcagctttct atttcaactg aaaatgatga agaatcttgc tcgctgattg
      361 taacaccgcc gaaagctttc cagcctaagc cattggaaga aaggaaaaag ctctggggtg
      421 catttttaca gctttatact ttgcgttccg ataacaactg gggaattggc gattttggcg
      481 atctcaaaca attccttgcc aacatttctg attatggtgc agattttgtg ggcttaaacc
      541 ctattcacgc cctctttccg gcagatcctg atgcggcaag cccttacagc ccgtcctttc
      601 gactttggca aaatattatt tatattgatg tttcagcagt agaagccttt caacaatctg
      661 aacaggctca acaatggttt cacaccaaag aaactcaaca gcaacttgcc gaattgcgag
      721 ccaaagattt tgtcgattac agccaagtag cgcaactgaa attaaaggct ctgcagtttg
      781 cttttgagca tttttcacag tcatctcaac aacaatcgca aacagcgttc gatgccttta
      841 ttgagcaagc aggcgagcca ttaaaaatcc aagcaacgtt cgatgctttg caccactgga
      901 tttcatctga atttggcgaa aaaggcggct ggacaaactg ggcggaggaa tatcaaagtt
      961 actattcgcc taaagtagct gaatttcaaa tatcgcaggc aacgcagata cgtttttata
     1021 tgtggttgca atttgtggca aaccagcaat tagcagaatg caaccggttt gctcaatcac
     1081 tttcaatgcc gattggtttt taccgcgatt tagccgttgg tgttactcaa agcggagcgg
     1141 aaacttgggc ggataaagcc ctatttgtgc aagaggcgtc aatcggtgca ccacctgata
     1201 tgcttgcccc gaacggacag agctggggac tttcgccaat gcacccgcat attctacaaa
     1261 gccgaggtta tcagccgttt attgatttag tgcgtgctaa tatgaaacat tgtggggcat
     1321 tgcgaatcga ccatattctc ggcttcgccc gtatgtggtg ggtggcgaac ggtgaatcgg
     1381 caaaagaagg gatttatgtc cgttatccgc tcgaagattt gctctctatt ttggcattag
     1441 aaagccaacg tcaccaatgt ttagtgattg cagaggcact tggcattgtg cctgaaggca
     1501 ttttggactc tctcgagcaa aagggcattt ttgcctacaa tgttttttat tttgaaaagg
     1561 cagaaaacgc gtttaaaccg ctggaaaatt atccttacca agcgatgaca actctaagca
     1621 cccacgattt accgactatt caaggctatt ggaaaggcta tgattttgag ctaggcgaaa
     1681 aatttgacac ttacccaagc aaagccgtat tgagaaagct gaaagaagag cgttcgtacg
     1741 accgcttgaa tatccgtaat gcggtggaaa aagtgatagc actcgagcca aatgaagtgg
     1801 gagtaacaat aaaatttacc caccaattac aacgctatgt ggctcacact cacagtgcat
     1861 tattcggtac acagcccgaa gattggctca atatgttaga gccggtgaac attccgggaa
     1921 ccagcaccga ataccctaac tggagaagaa aattatccgc aaccaccgag cagatttttg
     1981 caaataaaga tattcaacaa ctgctaaaag atataaacga aattcgtaaa ggataataac
     2041 aagcggtcat ttttaggtaa atttttacaa aaaatgaccg cttgtaattt gtatttattc
     2101 gctctattgc tgatgttttc tgtgaagttt aatccagttg taataaccgt aaatagagtt
     2161 acataaatac atcacataca tcaccaacag cggcaagctg gtttcgccgt tttggaagta
     2221 cattgccgtc cataaagaaa tggtcataat attcacgata atccacaatg cccattgctc
     2281 acggtagcga agtaccatca aaatttgtgc cacaatcgaa ataaccactg ttgcaccatc
     2341 taatatagct aacgcactgc ctaaatattt aagcaattca atataaagaa atgtgccgat
     2401 aatggtggta atggcgacaa tcacccactg ttttgcggtt aaagctttag caattacctc
     2461 ttccacacca gcattattta ccgtgttttc gctggtcata tttttacgcc agaaatagaa
     2521 accgataaac tgcaccggca catatacaag taaattcagc atcatttcac catataactg
     2581 aaaggtataa gagatataag cataaagcga aacggaaatt aagccgaata gatagttact
     2641 gatttttcct ttaccgacaa ataccacgca taaaatacct gttattgccg caatagttgc
     2701 aatccaagta tcgggttgat aaataaaaat accgatttga atcgctaaaa aaacaatcaa
     2761 ccaacttgcc tcaaaagtag tccaaccact aaaaaactct tgttttaact tagttgaaaa
     2821 agatgaacag c
//
LOCUS       DANLRW010000178         2679 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.179, whole genome shotgun sequence.
ACCESSION   DANLRW010000178 DANLRW010000000
VERSION     DANLRW010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.179"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            22..834
                     /locus_tag="PXA71_002474"
     CDS             22..834
                     /locus_tag="PXA71_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDL5106532.1"
                     /translation="MGRPELERAVLSVQNQTYPCKHYVFVDGEKYHQQAADILKNFPS
                     VIVTYLPMNTGADGWVNSSINAIAPFLVKEDIICYLDDDNWFEPTHVESGVHALLEMQ
                     SDYAYSLRNFYDLDGEFLCIDTIESLGEYNCVYQEPLECNYQLGGVKGVLSINLNDCQ
                     HIDTNCYFIRSEIARLISTAWYTGIHNDRNVYKKLQELALKGNCTKKVTVNYTLDTRK
                     YYGSVFNELLEEPFLLSEYDAYQFTNEVIKFHSEESLKAWGGCLIWEQNNGS"
     gene            966..1664
                     /gene="aphA"
                     /locus_tag="PXA71_002475"
     CDS             966..1664
                     /gene="aphA"
                     /locus_tag="PXA71_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HDL5106533.1"
                     /translation="MTAATMFASLIAFSAQAGGPKVAYTQPGIDMRTHEAQQAPIHWV
                     SIEQIKESIKDLPPMAVSFDIDDTVAATSGCFHYGKQKYSPDDFSYLKNQDFWDEINA
                     GCDKYSLPKQVAINLIKMHQERGDQVYLITGRTAGKNEQVTTIMQKYLGIKNMQPVNF
                     MGGKAHSTKYDKTPAIIEHKVQIHYGDSDDDILAAREAGIRGIRILRAANSNYTPFPQ
                     AGGYGEEVVVNSSY"
     gene            1845..2606
                     /gene="udp"
                     /locus_tag="PXA71_002476"
     CDS             1845..2606
                     /gene="udp"
                     /locus_tag="PXA71_002476"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HDL5106534.1"
                     /translation="MSEVFHLGLTKAMLKGAKIAIVPGDPARSERIAKKMDNPEFLAS
                     TREFTSWLGYLDGEPVVVCSTGIGGPSVSICVEELAQLGVRTFLRIGTTGAIQEHINV
                     GDILITTGAVRLDGASQHFAPMEYPAVANFECTNALYAAAVESGVTPYVGITASSDTF
                     YPGQERYDTFTGKIYRHFQGSLKQWQDLNVMNFEMESATLFTMCSALGLRAGMVAGVI
                     VNRTQQEIPNEATIHDTEHKAVSVVVEAARKLIKG"
BASE COUNT          850 a          434 c          561 g          834 t
ORIGIN      
        1 gtagctgtta tcagttcaac aattggtcgt cctgaattag aaagagctgt tttaagcgta
       61 caaaatcaga cttatccttg taaacattat gtttttgttg atggagagaa atatcaccaa
      121 caagcggctg atattttaaa gaattttcca agtgttattg ttacttatct cccaatgaat
      181 accggggctg atggttgggt aaatagcagc attaatgcaa ttgcaccatt tttagtgaaa
      241 gaagatatta tttgttatct ggatgatgat aattggtttg aacctactca cgttgaatct
      301 ggtgtgcatg ctttattaga aatgcaatct gattatgctt actctttacg taatttttat
      361 gatttagatg gcgagttttt gtgtattgat acgattgaat cgttgggaga atataattgc
      421 gtttatcaag aaccattaga atgtaattat caattaggtg gtgttaaagg tgttttatca
      481 ataaatctga atgattgtca gcatattgat acgaattgct attttattcg tagtgagata
      541 gctcgcctta tcagtacggc ttggtacaca ggtattcata atgatagaaa tgtatataaa
      601 aaattacaag aattggcact aaaaggaaat tgtacaaaga aagttacggt taattatact
      661 cttgatacac gtaaatatta tggatcagta tttaatgaat tattagagga gccattttta
      721 ttaagcgaat atgatgccta tcaatttacg aatgaggtga ttaaatttca ttcagaagaa
      781 agccttaaag cttggggagg ttgcttgatt tgggaacaga acaatggctc ataagcgtta
      841 agcgtaatcg tttgcttgtg atcatattca caaaataagg tttttgtatt agctaagagt
      901 gcctaataag attaaaatag gtatggttaa tcatatggag gtattttata aaatttacat
      961 taaaaatgac ggcagcgaca atgtttgcat ctcttattgc tttttcagca caagcaggcg
     1021 gaccaaaagt agcttatacc cagccgggaa ttgatatgcg aacacatgaa gcacagcaag
     1081 cgccaattca ttgggtatct attgagcaaa ttaaagaaag catcaaagat ttacccccta
     1141 tggcggtaag ttttgatatt gatgatactg ttgctgcaac tagcggttgc ttccactacg
     1201 gaaagcaaaa atattcgcca gacgatttca gctacttaaa aaatcaagat ttttgggacg
     1261 aaattaatgc tggctgtgat aaatattctt tgccaaagca agttgctatt aatttaataa
     1321 aaatgcacca agaacgtggt gatcaagttt atttaattac ggggcgtacc gcaggtaaaa
     1381 atgaacaagt tacaacgatt atgcaaaagt atcttggtat taaaaatatg caaccggtaa
     1441 attttatggg ggggaaagca cattcaacaa aatatgataa aacccctgcg attattgaac
     1501 ataaggtgca aattcactat ggtgacagtg atgatgatat cttagctgcc cgtgaagccg
     1561 gtattcgagg tattcgtata cttcgtgcag caaattctaa ttatacgcca ttccctcagg
     1621 ccggaggata tggtgaagaa gttgttgtca attcaagtta ttaatttctt agtctgaaat
     1681 atggccacca ttgcgtggcc atcatttttt atttatataa tgacgaaacc gtttaccttt
     1741 gatctagttc acaaaatcaa actttgcttg caaaaaattg tcgtaaatta accgcttgct
     1801 aagatagaat ggctcatatc cagttagata aaaaggagat aaaaatgtct gaagtatttc
     1861 atttaggttt aaccaaagcc atgctcaaag gtgcaaaaat tgcaatcgtt ccgggcgatc
     1921 cggctagaag tgaacgtatt gccaaaaaaa tggacaaccc agagttttta gcctcaaccc
     1981 gtgaatttac ctcttggtta ggttatttag atggcgaacc ggtggtggtt tgttcaaccg
     2041 gtattggcgg accgtcggtg tcgatttgtg tggaagagtt agcacagtta ggtgttcgca
     2101 cattcttacg cattggcaca acaggtgcaa ttcaagagca tattaatgta ggcgatattt
     2161 taattaccac cggagcggtg cgtttagatg gtgcgagcca acattttgca ccaatggaat
     2221 atcctgcagt agcgaatttt gaatgtacta atgctcttta tgcagcagca gtggaatcag
     2281 gcgttacacc ttatgtgggg attacagctt catcagacac tttctacccg gggcaagaac
     2341 gttacgacac tttcaccggc aagatctatc gtcatttcca aggttcatta aaacagtggc
     2401 aagatctcaa tgttatgaat tttgaaatgg aatccgccac tctctttacg atgtgttcgg
     2461 cattaggctt gcgagcaggt atggttgctg gtgtaattgt aaaccgcact caacaagaga
     2521 ttccgaatga agcaaccatt cacgacaccg aacataaagc cgtttcggta gtagtggaag
     2581 cggcaagaaa attaattaaa ggctaatctt taaatttaaa agcaaaaaag gtaaattgtc
     2641 tttgttacaa tttacctttt ttctttttag ggagctttc
//
LOCUS       DANLRW010000179         2676 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.180, whole genome shotgun sequence.
ACCESSION   DANLRW010000179 DANLRW010000000
VERSION     DANLRW010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.180"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            765..1205
                     /locus_tag="PXA71_002477"
     CDS             765..1205
                     /locus_tag="PXA71_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3577 domain-containing protein"
                     /protein_id="HDL5106535.1"
                     /translation="MTTQTSTQKNYFNLHTTGIGYLSNIRTVTPKKGDEFLACTIGAL
                     IGEAGEGAKAEYRYFDCKVVGEAAIDLVNRAKASVEADKKVLISFVLADLWTDTFTYQ
                     KDGKNHKKGDTGVMLKARLIRIKSVKIDGVVKYQEPEKIDAQSE"
     gene            1312..1959
                     /locus_tag="PXA71_002478"
     CDS             1312..1959
                     /locus_tag="PXA71_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3560 domain-containing protein"
                     /protein_id="HDL5106536.1"
                     /translation="MTINTYAKFAPTVFVAKCPEAHTKGEIITLTSKYGNETEVQIHN
                     LVKQDNEHYYYSFTRCDGMDSQSFAQQKAERYQGYADNATKRSQSWANAANEGLEFLR
                     LGEPIKIGHHSEKRHRNLIERNARRMDNALSEMNKTESYESRIAYWEKMAGKIDLSMP
                     ESLEYFKFELDKAKEKHKELKDNPEKREHGYSLTYAKKAVNELEKKVKLAELLWA"
     gene            1983..2390
                     /locus_tag="PXA71_002479"
     CDS             1983..2390
                     /locus_tag="PXA71_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme utilization protein"
                     /protein_id="HDL5106537.1"
                     /translation="MNRQGVYINGKQVFDSKGKEINSIEIIGSTVQTVVGINKGSISM
                     VSSNNALIVDGQTIAFEPSPTIHIEVFGNITNLNSGAGNVNIKGDVSHIETVSGDVNV
                     DGTVTSDVRTVSGDIRCKTIAGKVETISGDIYR"
     gene            2468..>2676
                     /locus_tag="PXA71_002480"
     CDS             2468..>2676
                     /locus_tag="PXA71_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106538.1"
                     /translation="MKDILLDFDDTSCYLGDWEEILEEYNDRVRVEDFWHYAKEFETV
                     PHLGNLYQEHVILKLIARFCIELDI"
BASE COUNT          877 a          480 c          538 g          781 t
ORIGIN      
        1 gttatcaatc tataccagcc gaaatgtctc ccagcattct gaaagggaac tctgtaaaat
       61 tacaggaatg ccacctaaac aataaatgga taatgccagc cactttatcc gttgtatttt
      121 gtcacatgcg tgattgcaat gtcataatat tacccgactt ggggatatta tgacattgca
      181 atcattgctc acttttctta gcctgagccc acaggtgaat aaagggtgcc gtttgtgtcc
      241 tcgatgatgc cacagatatg ccgattaaag accacaaggt aatcgggtaa attacgaacg
      301 aaaatatcaa cattgtcacg aaggtgctgc tattttcaat atagtaactt atattggtct
      361 aacttaaatt tcatttattc ttcaaaagta caacaccgtt ggtaagtgat ttatcaacgg
      421 tgttgtcatt tccaattctc taaaatcaaa attcaattct caattaactt tatgattcaa
      481 tatgactaaa ttatcctcaa tttaagacgc tgtatataac agcacttaat aagtcgcata
      541 actcctgaga agcgacggct atccttagag gtagttgagt tattgccaaa atgtctccca
      601 gcattccgaa agggaactcc acaatattgt gggaatgccg attaaacctc taccatttcg
      661 gtgaatttac atcgaaattt catttaactt ccaccttgcg gggaacattt ttcccgtgtt
      721 gggtaaggat gtttctccgc ttttttactt tggagaaaca gactatgaca actcagactt
      781 ctactcaaaa aaattacttc aatcttcaca caaccggaat cggctatctg agcaatatcc
      841 gcacagtgac tccgaaaaaa ggtgatgaat tcttagcttg tactattggt gctctcattg
      901 gagaagcagg agaaggtgca aaagcagaat atcgctattt tgattgcaaa gttgtgggcg
      961 aagctgcgat tgatttggtc aatcgggcaa aagcctctgt tgaagctgat aagaaagtac
     1021 tcatctcttt cgttttagct gacctttgga cagatacttt cacctatcaa aaagatggaa
     1081 agaatcacaa aaaaggtgat actggtgtaa tgctgaaagc tcgcttaatt cggattaagt
     1141 ctgtcaaaat tgatggagtg gtaaaatacc aagaaccaga aaaaatagac gcacaatctg
     1201 agtaatttta cctaagcccg acattttatg ttgggcttta ctttatgtcc cgtagggaaa
     1261 tgctccctgc ggtgtgtttc ccttcatttt tacaatttta ggagaaacac tatgactatt
     1321 aacacttatg caaaatttgc acctactgtt ttcgtagcaa aatgccctga agcacatacc
     1381 aaaggtgaaa ttatcactct aaccagcaaa tatggtaatg aaaccgaagt tcaaatacat
     1441 aacttagtga agcaggataa tgagcattat tactattctt tcactcgttg tgatgggatg
     1501 gatagtcagt catttgctca acaaaaagca gaacgctatc aaggctatgc agataatgca
     1561 accaaacgca gccaaagctg ggcaaatgca gctaatgagg ggctggagtt tttgagacta
     1621 ggtgagccaa taaaaattgg gcatcatagt gaaaaacgcc accgtaacct cattgaacgt
     1681 aatgcccgtc gaatggataa tgcgctttca gaaatgaaca aaacagaaag ctatgaatcc
     1741 cgtattgcat attgggaaaa aatggcaggg aaaattgacc tttctatgcc ggaaagtctg
     1801 gaatacttta agtttgaatt ggataaagcc aaagaaaagc ataaagaatt gaaggacaac
     1861 cctgagaaac gagagcatgg ttattcactg acttatgcta aaaaagcagt taatgaactt
     1921 gagaaaaaag tgaaattagc tgaattactt tgggcataat ttttacatag aggattatta
     1981 atatgaatcg acaaggcgtt tatatcaatg gtaaacaagt ctttgactct aaaggcaaag
     2041 agattaatag cattgaaatc attggtagca cagtgcaaac agtcgttggg ataaataaag
     2101 gatctatctc aatggtctcc agcaacaatg cattaattgt tgatgggcaa acaattgcat
     2161 ttgaaccttc tccgactatc catattgaag tatttggtaa tattaccaat ctcaattcag
     2221 gagcaggaaa tgtgaatatc aaaggtgatg taagccatat agagactgtg agtggtgatg
     2281 tgaatgttga tggtactgtg acttcagatg taagaacagt aagcggtgat attcgctgta
     2341 aaactattgc aggtaaagtc gaaaccatca gcggagatat ttatcgctaa tttttgctac
     2401 ttaccctatc gggaaacatt cccgataggt gtgtttcccc acttttattt aaattttgga
     2461 gaaacatatg aaagacattc ttttggattt tgatgacacc tcttgttatt taggtgattg
     2521 ggaagagata ctagaagaat acaatgatcg tgttcgagtt gaggattttt ggcattacgc
     2581 taaagaattt gaaaccgtac ctcatttggg caacctatac caggagcatg tcatcctgaa
     2641 gttgattgct cgattctgta ttgaactgga tattga
//
LOCUS       DANLRW010000180         2657 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.181, whole genome shotgun sequence.
ACCESSION   DANLRW010000180 DANLRW010000000
VERSION     DANLRW010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.181"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(74..1669)
                     /locus_tag="PXA71_002481"
     CDS             complement(74..1669)
                     /locus_tag="PXA71_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDL5106539.1"
                     /translation="MRLSQLSLSVLLLSASSLVAAAPVNTLINCVATPPMKLSPAITN
                     DANDFNASSQQIYNRLLAFKAGELTVEPSLAERWEISDDGLSYTFHLRKDVKFHSNKQ
                     FTPTRTLNADDVVFSFQRQMDLNHPYHKVSDGTYFYYHWMNLPKILKTVEKVDDYTVK
                     ITLQQPNAPFLTTLAMDFLSIYSKEYADKLLAEGKPELLDQAPIGTGPFVFQAYQTDQ
                     AVRYVANPDYFQGKAKFEKLIFSITPDAGTRYAKLKAGECDVIDFPNISDIAQMKQDP
                     KVNLLQRDGLNLAYIGLNSTKPALNNAKVRQALHYATDKKAIVEAVYQGGGTVASNPF
                     PDSVLGYNPNLPQYEFNLEKAKALLTEAGFADGFETEIWVQPVVRPSNPNPRRTAEII
                     QADWAKIGVKAKLVTHEWADFNKRTREGEFSTGTYGWTSRNGDPDNFLFPLLSKSNIP
                     GTNYGRWTDEKFEQLLAQAVQTQNRDERAKLYQQAVEIANEQTPFIPLAHAINYVPLS
                     KRVQGFVQNPFGYTPFYGVSLSE"
     gene            1818..2258
                     /gene="mioC"
                     /locus_tag="PXA71_002482"
     CDS             1818..2258
                     /gene="mioC"
                     /locus_tag="PXA71_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005605493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HDL5106540.1"
                     /translation="MTSICIITGSTLGGAEYVADHINEVLSEQGFEVELFNQATLADI
                     EGKTNLIIVTSTHGAGELPENIQQLFDDLANSSADFSSMKFGVIGLGSSDYDTFCNAV
                     NIVEEALKAKGASQVCESLRIDVMNNFDHDGSAEEWLPSFVEQL"
     gene            2270..2437
                     /locus_tag="PXA71_002483"
     CDS             2270..2437
                     /locus_tag="PXA71_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1232 domain-containing protein"
                     /protein_id="HDL5106541.1"
                     /translation="MNKISANKAKWIKIAIILIYMFSPVDILPEAILGPFGLVDDAAA
                     LMLLIKTILEK"
     gene            complement(2526..>2657)
                     /locus_tag="PXA71_002484"
     CDS             complement(2526..>2657)
                     /locus_tag="PXA71_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248981.1"
                     /note="transcriptional repressor of asnA which codes for
                     aspartate-ammonia ligase; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HDL5106542.1"
                     /translation="KVMTHTIEELHSVLAGKIQSIDEIQSTETLISLQNPISRDILP"
BASE COUNT          780 a          553 c          542 g          782 t
ORIGIN      
        1 ctaaaagaaa agcagtctat tctctaccac attttgcaaa aaagtggcaa aaatagaccg
       61 cttgtatggc atatcactcc gataaactca ccccataaaa tggcgtgtag ccaaacggat
      121 tttgcacaaa accttgcacc cgtttgctga gtggtacata attgatagcg tgagccagcg
      181 gaataaatgg cgtttgttcg ttggcaattt ccaccgcttg ttgatagagc ttcgcccgct
      241 cgtcacggtt ttgggtttgt acagcttgag ctaataactg ctcaaatttc tcatccgtcc
      301 aacgcccata atttgttccc ggaatattag atttgcttaa taaagggaag aggaaattat
      361 caggatcacc attacggctt gtccaaccat aagtgccggt agagaactcg ccttcacggg
      421 tgcgtttgtt aaaatccgcc cattcgtggg tcactaattt cgctttcacc ccgattttcg
      481 cccaatccgc ctgaataatt tcagccgttc gacgtgggtt tgggttagaa gggcgcacta
      541 ccggttgtac ccaaatttcc gtttcaaatc catcggcaaa gccggcttct gttaataggg
      601 ctttggcttt ttcaaggtta aattcatatt gcggtaaatt tggattatag cccaacaccg
      661 aatcagggaa cggattactt gccaccgtgc caccgccttg ataaacagcc tcgacaatcg
      721 ctttcttatc ggttgcataa tgcaaggctt ggcgaacttt ggcgttattt aatgccggtt
      781 tggtgctgtt taagccgata taagctaaat tcagcccgtc tctctgtaac aaattcacct
      841 tcggatcttg tttcatttgg gcaatatcgg aaatattcgg gaaatcaatc acatcgcatt
      901 cacccgcttt cagtttggca taacgagtgc ccgcatcagg ggtaatacta aaaatcagtt
      961 tctcaaattt tgctttacct tggaaataat ccgggttcgc aacataacgc accgcttgat
     1021 cggtttgata ggcttggaac acaaaaggcc ctgtgccgat cggggcttga tccaataact
     1081 ccggcttgcc ttccgccagc aatttatccg catattcttt tgaataaatc gacaagaaat
     1141 ccatcgctaa ggttgtcaga aaaggagcat taggttgctg taaggtgatt ttaacagtgt
     1201 aatcgtccac tttttccact gtttttaaaa tcttcggcaa attcatccaa tggtaataga
     1261 aataagtacc gtcagagacc ttatggtaag ggtggtttaa atccatctgg cgttggaacg
     1321 agaacactac atcatccgca ttcagcgttc gagttggcgt aaattgttta ttggaatgaa
     1381 atttcacgtc tttacgtaaa tggaatgtgt aacttaagcc atcgtcactg atttcccaac
     1441 gttccgccaa actcggctca accgttagtt caccggcttt aaacgctaat aagcgattat
     1501 aaatttgttg tgaactggcg ttgaaatcat tggcatcatt agtaattgca ggactaagtt
     1561 tcatcggtgg agttgccacg caattaatca acgtatttac cggagctgct gccaccaaac
     1621 tgctggcact taagagtaaa acagaaagag ataattgaga aagacgcata aagactcctt
     1681 aacattttct actaacttac tcggcattaa cgtattttca aaataactaa aggttataat
     1741 ttataatcag aataatcagt tgcaaaccaa tgattcttgg ctagaatatt ggcagttttt
     1801 taaacgagag atttactatg acatcaattt gtatcatcac cggcagcacc ttaggcggtg
     1861 cggaatatgt tgccgatcac attaatgagg tattaagcga acaaggtttt gaagtggaac
     1921 tgtttaacca agccaccctt gccgatattg agggcaaaac caatctgatt atcgttacct
     1981 ctacccacgg agccggcgag ttacccgaaa atatccaaca gctatttgac gatttagcaa
     2041 atagctcggc tgatttcagc agtatgaaat ttggtgtaat cggtttaggt agctccgact
     2101 atgacacctt ctgcaatgca gtaaatattg ttgaagaagc tctcaaagcg aaaggggcaa
     2161 gccaagtttg cgaatcactg agaattgatg taatgaataa tttcgaccac gatggcagtg
     2221 ctgaagaatg gttaccatca tttgttgaac aattataact taagtatcaa tgaacaaaat
     2281 cagtgcaaat aaggcaaagt ggattaaaat cgctattatc ttaatctata tgttcagccc
     2341 tgtagatatt ctacccgaag cgattttagg cccattcggt ttggttgatg atgccgccgc
     2401 attaatgcta ttgattaaga ctattttgga aaaataggca tagtagacaa aatagttgca
     2461 aaaaaccaaa acaaaacgac cgcttgtaac ccaatacaag tggtcttatc ttttacttaa
     2521 ttcttttaag ggagaatatc tcttgaaata ggattttgaa gtgaaataag cgtttctgtt
     2581 gactgaattt catcaataga ctgaattttt cctgctaata ccgaatgcaa ctcttcgatg
     2641 gtatgggtca ttacttt
//
LOCUS       DANLRW010000181         2647 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.182, whole genome shotgun sequence.
ACCESSION   DANLRW010000181 DANLRW010000000
VERSION     DANLRW010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.182"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..1255
                     /locus_tag="PXA71_002485"
     CDS             <1..1255
                     /locus_tag="PXA71_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HDL5106543.1"
                     /translation="SPLSAKDQIFFKNESFETGKSLNLDEVFDRNLSVETPNGFDVIL
                     EDKKTGNLSGVNQSNIKALQFFIYQSQQTEEPLQRRFENSEIYGPFVVKSENHTYNQY
                     FIKAVDAQKEWINTILDSPFIMAVLLMFAGIPLLIWLSFKITKPVKELTISANAVASG
                     NLETNPKLEAEWIYEIGEVGKSFNHMVISLKNLTQQQQRMISDISHELKTPLARLQLA
                     IAILRRKTCGLAEIDRIEAEVGKLDQLIKDLLTISREQLNYQIHKKIFVIDEIWNNVI
                     EDAKFETSQNNIIFIIKQNIKNPESYSINGAVGLLASALENLIRNGQKYAKKMLSVSM
                     NVEDGHLFLTVEDDGEGVPENEYENILKPFYRVDEARARETGGAGLGLAIVQNVVKQH
                     QGTIHLDKSNMGGLKIELKLPLWRS"
     gene            1305..>2647
                     /locus_tag="PXA71_002486"
     CDS             1305..>2647
                     /locus_tag="PXA71_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018650963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDL5106544.1"
                     /translation="MKLIEIENLNKYFGLGQTRAHILKNINLSIERGDFVAIIGASGS
                     GKSTLMNIIGCLDTASSGICRIDGKETQTMSADELSDLRQRKLGFIFQRYNLLSALNA
                     NENVALPAIYAGMDSSSRKKRADTLLTKLGLSDKTQHKPNELSGGQQQRVSIARALMN
                     GGEIILADEPTGALDSKSGETVLEILRDLHYEGHTIIMVTHDPNIAAQASRIVEIKDG
                     QIIRDERQRTDVQETALNKTTTQKPRFWNQLFESFKMATSAIMAHKMRAILTMLGIII
                     GITSVISVVALGRGSQQQILSNINNLGTNTMDIMNGTGFGDRRANLTKNLTISDALML
                     SRQNYVESTTPSSNVSATLIYGNTAVTGSVRGVGEQFIDVKGLKLISGRFFSAEEVKN
                     VAQVIVIDPNTQKDLGLTEPVEGKTILVDKKPLQIIGVAQQSNNMNQSSLTLWAP"
BASE COUNT          919 a          471 c          524 g          733 t
ORIGIN      
        1 ttctcccctt tctgcaaaag accaaatttt ctttaaaaat gaaagctttg aaacagggaa
       61 aagcttaaat ttagatgaag tttttgatag aaatttatca gttgaaacac ctaatggatt
      121 tgatgtaatc ctagaagata aaaaaactgg taatttaagt ggcgtaaacc aaagtaatat
      181 taaagcattg cagtttttta tttatcaatc acaacagact gaagagccgt tacaaagacg
      241 gtttgaaaat agtgaaatct atggtccatt tgtcgtgaaa tccgaaaacc atacttataa
      301 ccaatatttt attaaagcgg tagatgctca aaaagagtgg attaatacga ttttagactc
      361 accttttatt atggcagtat tacttatgtt tgccggaatt cctttattaa tatggttatc
      421 ctttaaaatt accaaaccgg ttaaagaatt aactatctcg gcaaatgcgg tagcctctgg
      481 taatttggaa actaatccta aattagaagc agaatggatc tatgaaattg gggaagttgg
      541 aaaaagcttt aatcatatgg tgataagctt aaaaaactta actcagcagc aacaaagaat
      601 gatttcggat atatctcatg agttaaaaac acctttagcc agattacaac tcgctattgc
      661 tatattacgc cgtaaaacct gtggtctggc agaaatcgat cgcattgaag cagaagtagg
      721 taaattagac caattgatta aagacttgtt aacaatatca cgtgaacaat taaattatca
      781 aattcataaa aaaatttttg taattgatga aatttggaat aatgtaattg aagatgctaa
      841 atttgaaacc tcacaaaata atattatttt tatcatcaag caaaacatca aaaaccccga
      901 atcttattct attaacgggg ccgtaggttt actggctagt gctttagaaa atttgatccg
      961 aaacggccaa aaatatgcaa aaaaaatgct gtcggtctca atgaatgtag aagatggtca
     1021 tttatttctc acagttgaag atgatggcga gggggttcct gaaaacgaat atgaaaatat
     1081 tcttaaacct ttttaccgcg tagatgaagc aagggcaaga gaaacaggag gagccgggct
     1141 aggattagcg attgtgcaaa atgtagttaa acagcaccaa ggtactattc atttagataa
     1201 aagtaatatg ggaggattaa aaatcgaact gaaacttccc ctttggcgtt cctaaggcaa
     1261 aaagcatatc gtttgtaaaa aacagtcgaa aaataaccgc ttgtatgaaa ttaattgaaa
     1321 tagaaaatct caataaatac tttggcttgg ggcaaacccg agcccatatt ctaaaaaata
     1381 tcaatctcag tattgaacgg ggtgattttg tcgcaattat aggtgcttca ggttctggca
     1441 aatctacctt aatgaacatt attggctgtt tagatactgc cagctcaggt atttgccgta
     1501 ttgatggcaa agagacccaa acaatgtctg cagatgaact gtctgattta cgccaacgta
     1561 aactggggtt tattttccaa cgctataatc tcctttcagc tttgaatgca aacgaaaatg
     1621 ttgccctacc tgcaatttac gccggaatgg atagctcatc acgcaaaaaa cgagctgata
     1681 cgttattaac gaagttagga ttatcagata aaacccaaca taagccgaat gagttatctg
     1741 gggggcaaca gcaacgagtc agcattgcac gagccttaat gaacggcggt gaaatcattc
     1801 ttgcagacga gcctaccggt gcattagatt ctaaaagtgg cgaaactgta ttggaaatct
     1861 tgcgagatct acactacgaa ggtcatacca ttattatggt aacacacgac ccaaacattg
     1921 ccgctcaagc cagccgtatc gttgaaatta aagatgggca aatcattcga gatgaacgcc
     1981 aacgtactga tgttcaagaa acggctctca ataaaacgac aacacaaaaa cctcgctttt
     2041 ggaatcaact gtttgaatcc ttcaaaatgg caaccagtgc aattatggcg cataaaatgc
     2101 gggcaatcct cacgatgctg ggcattatta ttggcattac ctctgtgatt tccgtagtcg
     2161 ctctcggtcg aggctcgcaa caacaaatcc tttctaatat caacaaccta ggcacaaata
     2221 cgatggatat tatgaatgga accggctttg gcgatagaag agccaatctg actaagaatt
     2281 taaccatcag tgatgcctta atgttgagtc ggcaaaacta tgtggaaagc actactcctt
     2341 caagcaatgt cagtgccaca ttgatttatg gtaataccgc agtaaccggt tcagtacgag
     2401 gtgttggaga gcaatttatt gatgtgaaag gattaaagct gatttcaggg cgctttttca
     2461 gtgccgagga agtaaaaaat gtagcgcagg ttattgtaat tgaccctaac actcaaaaag
     2521 atttggggct aacagagcct gttgaaggta aaacgatttt agtggataaa aaaccgttac
     2581 aaatcattgg tgtggcgcaa cagtcaaaca atatgaacca aagtagcctt accttatggg
     2641 cgcctta
//
LOCUS       DANLRW010000182         2623 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.183, whole genome shotgun sequence.
ACCESSION   DANLRW010000182 DANLRW010000000
VERSION     DANLRW010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.183"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(16..2076)
                     /locus_tag="PXA71_002487"
     CDS             complement(16..2076)
                     /locus_tag="PXA71_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015483985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5106545.1"
                     /translation="MKQVMNPINTPTQRFKDGNPATGEYGTIVTAEFLNNVQDSVINT
                     QQELHSVLAEAGIEANDEQVNQVAKAIKKIAGDATRDNFNALANPDGYKHIGRCKSVA
                     ELRTIRPTEHGQRILVDAYYEDGTTGGGEFVADLQDLVTPDDGGVCFVVNNNGGRWKR
                     VDLSHLTLFDFWAVGDGVTNDESAFVNAMRYSQFFIENGTFRINNAVNSVRDNVKILG
                     NKTGKLVLGAGIQQAGAEVFNINHSNYFISGFCIETPNKAIGIRFKSLDDAGVKNLHI
                     DNVVFNGTFYGVRAGESIQADTNYPTDNVIVQNCQSYCGSGNAGHYLCTKVKGVRFFN
                     NIAIGGRNVSAYGATSCSDIFIFGNREQGMAVTTVDVEAGVQVEDVQTGECVVANNIF
                     RHDIWMSGAKNAIINSNLCRRLRVTSGNPTDTGSNNVEFSNNQAKSIAISKYGSFDNP
                     SLFIDNINFINNILEPSEFNQDVYIDGTILKQCQFINNRCISKSKQYSVRLARNNPFL
                     NLTFKSNKLSDNPAIISGKQGVIFCDDLSLGVNKHRLRLRFSSPINFTVNQEWQKMPF
                     DRVLNDINGHVDIVSGQFIARTGGTFHLKGKITVTNSSEDVLNLYQLRLLINNEEKER
                     LINQSVSPKNSKSNTNGMTTINFDTVVDLKVGDIVDLQYKTTHELTLLSDSFLSQIYV
                     TQEF"
     gene            complement(2073..>2623)
                     /locus_tag="PXA71_002488"
     CDS             complement(2073..>2623)
                     /locus_tag="PXA71_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015586972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HDL5106546.1"
                     /translation="LLPPVSYDPNGRWLALSLEVEGRELDRIDARAKTLIDAVDVSTG
                     IFIDDWERVCGLTANSSLPLETRIERVIAKLNQLGGLSIGYITQVAKELGYCIKISEP
                     QPFIAGLSRAGDMLWHKDIMWTFFVDICNPTDDYKRFRASVSMAGDALMGRYKDPILE
                     SLLEEVKPAFSRVWVRYLGDIE"
BASE COUNT          784 a          601 c          431 g          807 t
ORIGIN      
        1 gtgtttttta gtcacttaaa actcctgagt cacataaatt tgagataaaa atgagtctga
       61 cagtaatgtc aactcatgcg ttgttttata ctgcaaatca acaatgtcac ctacttttaa
      121 atcaactaca gtatcaaaat tgattgttgt cataccattt gtatttgatt tgctgttttt
      181 aggtgaaaca ctttgattaa tcagtctttc tttctcttcg ttatttatta acagcctgag
      241 ttgatataaa ttcagcacat cttccgatga atttgtaacc gttattttac cttttaaatg
      301 aaaagtcccg cctgtccttg caataaattg accactgaca atatcaacat gaccattgat
      361 atcatttaac actctgtcaa acggcatttt ttgccattct tgattaacag taaaattaat
      421 cggcgatgaa aatcgcaatc ttaatctgtg cttatttact cctaagctca aatcatcgca
      481 gaaaataaca ccttgcttac ctgatataat cgcaggattg tccgataatt tattactctt
      541 aaatgttaaa tttaagaacg gattattgcg agcaagtctg acagaatatt gcttagactt
      601 gctaatacaa cgattattaa taaattggca ctgttttaaa attgtcccgt caatatacac
      661 atcttgatta aattcactgg gctccaaaat gttattaata aaattgatat tatcaataaa
      721 caatgaagga ttatcgaaag aaccatattt cgatattgca atagattttg cttgattatt
      781 tgaaaattct acattgttgc tgcctgtgtc agtcggatta cctgatgtga cacgcaagcg
      841 acggcagagg ttactgttga taatggcatt tttagcacca gacatccaaa tatcgtgtct
      901 gaaaatatta ttcgctacca cacattcgcc agtttgtaca tcttccactt gtacgcccgc
      961 ttccacatcg actgtcgtca ctgccatccc ctgttcacga ttaccaaaaa tgaaaatatc
     1021 agagcaagat gttgcaccgt aagctgatac attgcgacct ccaattgcta tattgttaaa
     1081 aaatcgcaca cctttaactt tggtgcagag ataatgtccc gcattacctg aaccacaata
     1141 cgattggcag ttttgtacaa tcacattatc agttgggtaa ttagtatccg cctgaatact
     1201 ttcacctgcc ctgaccccgt agaaggtgcc attaaacaca acattgtcaa tatggagatt
     1261 tttaacacca gcatcatcca aagacttaaa tcgaatacca attgctttgt tcggtgtttc
     1321 aatacaaaaa cccgagataa aataattgct gtgattaata ttaaaaactt cggcccctgc
     1381 ttgctggata cctgcaccta atactaattt gccggtctta ttgcccaaaa ttttcacatt
     1441 atcgcgaaca gaattaacgg cattgttgat acgaaatgta ccgttttcga taaaaaattg
     1501 agaatatctc atagcattta caaatgctga ttcatcattt gttaccccgt caccgacggc
     1561 ccaaaaatca aataatgtaa gatgtgaaag gtcaacacgc ttccaccgcc ccccattatt
     1621 attcacaaca aaacaaaccc caccatcatc aggcgtaact aaatcctgca aatcagccac
     1681 aaactcccca ccgcctgttg tgccgtcctc atagtaagca tccaccaaaa tacgctgacc
     1741 gtgttccgtt gggcggatag tacgtaactc cgcaaccgat ttgcagcgac cgatgtgttt
     1801 gtaaccatca gggttggcta atgcgttaaa attatcacga gtagcatcgc ccgcaatttt
     1861 cttgattgct ttagccacct gattaacttg ttcgtcattt gcttcgattc ctgcttcagc
     1921 aagtacactg tgcaattctt gttgggtgtt aatgaccgaa tcttggacgt tattcaaaaa
     1981 ttcagcagtc acaatcgtgc catattcacc agtggcaggg ttgccatctt taaaacgctg
     2041 tgttggggta ttaatcggat tcatcacttg tttcattcaa tatctcctaa atatcttacc
     2101 cacacacggc taaatgcagg ttttacctct tcaagtagac tttctaaaat tgggtctttg
     2161 tatcgtccca ttaacgcatc gccagccatt gacacacttg ctctaaaacg cttgtaatca
     2221 tctgtggggt tgcaaatatc cacaaaaaat gtccacataa tgtctttatg ccataacata
     2281 tccccagctc ggcttagccc agcaataaag ggttgtggct cactaatttt gatgcaatat
     2341 ccaagctctt tggccacttg agtgatatag cctatcgaca atccacccaa ctgattcagc
     2401 tttgcaatca cacgctcaat tcgggtttca agcggtagtg agctattcgc cgttaagcca
     2461 caaacccgct cccaatcatc aataaaaatg cctgttgata catcaacggc atcgattaaa
     2521 gtcttggctc tcgcatcaat gcggtctagc tctctcccct caacttcaag ggataacgct
     2581 agccatctgc cgtttgggtc atacgataca ggcggtaata aac
//
LOCUS       DANLRW010000183         2568 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.184, whole genome shotgun sequence.
ACCESSION   DANLRW010000183 DANLRW010000000
VERSION     DANLRW010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2568
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.184"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..2492
                     /gene="hrpA"
                     /locus_tag="PXA71_002489"
     CDS             <1..2492
                     /gene="hrpA"
                     /locus_tag="PXA71_002489"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HDL5106547.1"
                     /translation="PPLPTSPRKRGDGFRLTPIGRQLAQLPVDPRLGRMVIEAAKNGS
                     LHEVMMIVSALSIQDPRERPQEKQQSADDKHRRFADKESDFLAFVNLWHFIQAQQKEL
                     SKNQFRNLCRKDYLNYNRVREWQDIYHQLRLAVREMGLKINSEPASYQPIHTALLAGL
                     LSHIGLKDNEKMHYLGARNAHFFIFPNSALFKKQPKWVMAAELVETTKLWGRMVARIE
                     PEWVEPLAVHLTKSSYSEPHWAKSKGAVMASEKVSLYGIPIVAQRSVNYGSIDPTVSR
                     EIFIRSALVEGECHNNYKFFKENHRLIREVEALEHKSRRRDILVDEQVLFEFYDQRIG
                     TEVVSSKHFDTWWKQASKKDPELLNFEKSFLINDNANLASELDFPNFWHQGDLKLKLS
                     YQFEVGKDHDGVTVHIPLPLLNQVEPEGFDWQIPGLRHELIVSLIKSLPKSLRRNFVP
                     APNYADAFLGRAEPFKKPLLDNLSHELRRMTGVLVEPEQWDLSQLPPHLRMTFRVIDD
                     KGKKLQESENLDELKFALKDEVQNTLSNIADDGIEQSGVHIWNFAELPQFYEQKKAHF
                     SVKAYPAIVDEQTAVGVKLFETEFEQARAMQAGLRRLLLLNVPSPIKYLHEKLPNKAK
                     LGLYFAPFGKVLELIDDCIACAVDQLVEEFGGFVWTEEKFTQLHEFVRANLNDKTVEI
                     AKQVEKCLTLAYELNKRLKGKLDFTMAFALSDIKTQIEGLIYPDFVTKTGYARLADLY
                     RYLTAIERRLDKLLVDSNTDRAKMLRVEAVQEAYKQLLAKLPKSKAVPDEVLEIRYMI
                     EELRVSLFAQQLGTKYPISDKRILNVINEIK"
BASE COUNT          729 a          603 c          638 g          598 t
ORIGIN      
        1 ctccccccct cccaacctcc ccccgtaaac ggggggatgg gtttagatta accccaatcg
       61 gtcgccaact cgcccaactg ccagtcgatc ctcgcttagg cagaatggtg atcgaggcgg
      121 cgaaaaacgg ttcgttgcac gaagtgatga tgattgtgtc agctctctca atccaagacc
      181 ctcgtgagcg tccgcaggaa aaacagcagt cggcagacga taaacaccgc cgttttgccg
      241 ataaagagag cgatttctta gcctttgtga atttgtggca ctttatccaa gcccaacaaa
      301 aagaactgtc gaaaaaccag ttccgtaatc tctgccgtaa ggattatttg aactacaacc
      361 gtgtgcggga gtggcaggat atctaccacc aactccgcct tgcagttaga gaaatgggct
      421 taaaaattaa cagtgagccg gcaagttatc agccgattca caccgccctg ctcgccggct
      481 tgttgtcgca tatcggcttg aaagataatg aaaaaatgca ctatttagga gcaagaaatg
      541 cccacttttt cattttcccg aactcggcac ttttcaaaaa acagccgaaa tgggtaatgg
      601 ccgcagagct ggtggaaact accaaacttt ggggacgaat ggtcgctcgc attgagccgg
      661 aatgggtgga accgttggca gtacacctca ctaaatccag ttacagcgaa ccacactggg
      721 cgaagtcaaa aggagcggta atggcatcgg aaaaagtgtc gctctacggc attccgattg
      781 tggcacaacg ctcggtgaat tatggctcga tagacccaac cgtcagccgt gagattttta
      841 tccgctcggc gttggtggaa ggcgaatgtc acaacaatta caaatttttc aaagaaaatc
      901 accgcttgat ccgtgaagtt gaggcattgg aacacaaatc ccgccgccgt gatattttgg
      961 tggacgagca ggtgctgttt gagttttacg atcagcggat tggcaccgaa gttgtgtcga
     1021 gcaagcattt tgatacttgg tggaaacagg caagcaaaaa agatcctgaa ctgctgaact
     1081 ttgaaaaatc gttcctgatc aacgacaacg ccaaccttgc cagcgagctg gatttcccga
     1141 atttctggca tcaaggcgat ttaaaactca aactgagcta tcagtttgag gtcggaaaag
     1201 atcacgatgg cgtgacggtg catattccgc taccgctgct taaccaagtg gaacccgaag
     1261 gtttcgattg gcaaattccg gggctacgcc acgagctgat cgtctcgctg attaaatctt
     1321 taccgaaatc gctacggcga aattttgtgc cggcgccgaa ttatgcggac gcctttttag
     1381 ggcgagccga gccgtttaaa aaaccgttgc tggacaatct aagccacgaa ctacgccgaa
     1441 tgacgggtgt attggtcgag cctgaacagt gggatttaag ccaactgccg ccacatttgc
     1501 ggatgacttt ccgtgtgatt gatgataaag gcaagaaact gcaagagagc gaaaaccttg
     1561 atgagctgaa atttgccttg aaagatgagg tgcagaacac cctttccaac attgccgatg
     1621 acggcattga gcaaagtggt gtgcatattt ggaattttgc cgaattgcca cagttctatg
     1681 agcagaaaaa agcccatttc agcgtgaaag cctaccctgc gattgtcgat gaacaaacgg
     1741 ctgtgggggt gaaactgttt gaaacggaat ttgagcaggc tcgtgcaatg caggcaggac
     1801 ttcgccgtct gctgttgcta aatgtgccat cgccgattaa atatctacac gaaaaactgc
     1861 cgaacaaagc caagctgggc ttatattttg ccccgttcgg caaagtattg gagctgattg
     1921 acgactgcat tgcctgtgcg gtagatcagc tggtagaaga gttcggcggg tttgtctgga
     1981 cggaggaaaa attcacccaa ctgcacgaat ttgtgcgggc aaatttaaac gataaaaccg
     2041 tagaaattgc caaacaggtt gaaaagtgcc tcacactggc ctacgagcta aacaagcggt
     2101 taaaaggcaa gctcgatttt acgatggcgt ttgcgttaag cgacatcaaa acccaaatcg
     2161 aagggctgat ttaccccgac tttgtcacca aaaccggcta cgcccgcctt gcagatttat
     2221 accgttattt gaccgctatc gaacgccgtt tggataaact gttggtggac agcaacaccg
     2281 accgagccaa aatgctacgg gtggaagcag tgcaagaggc atataaacag ctccttgcca
     2341 aactgccaaa atccaaagcg gtgccggacg aggtactgga aattcgatat atgatcgaag
     2401 aactgcgggt cagtctgttc gctcaacagc tcggcacaaa atacccgatt tcggataagc
     2461 ggattttgaa tgtgatcaat gaaataaagt aatattccct atacaacaag cggtcagata
     2521 agtaaaaaat tttgcaactc tgaccgcttg ttttctcgaa tacctatt
//
LOCUS       DANLRW010000184         2494 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.185, whole genome shotgun sequence.
ACCESSION   DANLRW010000184 DANLRW010000000
VERSION     DANLRW010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.185"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(116..191)
                     /locus_tag="PXA71_002490"
     tRNA            complement(116..191)
                     /locus_tag="PXA71_002490"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(156..158),aa:Thr,seq:ggt)
     gene            complement(195..269)
                     /locus_tag="PXA71_002491"
     tRNA            complement(195..269)
                     /locus_tag="PXA71_002491"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(234..236),aa:Gly,seq:tcc)
     gene            complement(313..397)
                     /locus_tag="PXA71_002492"
     tRNA            complement(313..397)
                     /locus_tag="PXA71_002492"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(361..363),aa:Tyr,seq:gta)
     gene            complement(432..507)
                     /locus_tag="PXA71_002493"
     tRNA            complement(432..507)
                     /locus_tag="PXA71_002493"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(472..474),aa:Thr,seq:tgt)
     gene            754..1704
                     /gene="coaA"
                     /locus_tag="PXA71_002494"
     CDS             754..1704
                     /gene="coaA"
                     /locus_tag="PXA71_002494"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HDL5106548.1"
                     /translation="MSLEKTSKITPFLTFDRQQWADLRKSVPLKLTEQDLKPLLGFNE
                     DLSLEEVRTIYLPLARLIQYYIEENLKRQTVLHRFLGIEPPKVPYIISIAGSVSVGKS
                     TSARILQALLSHYPKERKVDLITTDGFLYPLATLTEKNLLKKKGFPESYDIHSLIRFV
                     SDIKSGKRNVKAPIYSHLTYDIIPNQFNTVDQPDIVILEGLNVLQSGMNYPSSPHNVF
                     VSDFVDFSIYVDAEESLLKKWYINRFLKFRRSAFADPNSYFHHYASLSEQEAIETAST
                     IWEEINGLNLRQNILPSRERANLILIKGQDHAIETVKLRK"
     gene            1857..2396
                     /locus_tag="PXA71_002495"
     CDS             1857..2396
                     /locus_tag="PXA71_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005598787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbE family thiol:disulfide interchange protein"
                     /protein_id="HDL5106549.1"
                     /translation="MNKKFLLPLILFLALSVAFLVQLARNSQGDDPKKLESALIGKTV
                     PSFNLESVLDEKQTIDQNIVKTGKPRLLNVWATWCPTCYAEHEYLTILAKQGVEIVGI
                     DYKDERPKAIKFLANYGNPYKAIIFDPKGSLGLDLGVYGAPETFIIDGNGVIQYRHAG
                     DVNDQVWNQVLKPIYDGLK"
BASE COUNT          785 a          514 c          471 g          724 t
ORIGIN      
        1 tttctaaaag cctcttaaac aaaaacggtt acaatggaac aaaagaaccc attaaccata
       61 atgtagaaat taataccaat aaaaatttgc gtgagaaaga tagaattcag agaagtggtg
      121 ctgataggcg gatttgaacc gccgacctca cccttaccaa gggtgcgctc taccaactga
      181 gctatatcag cgcttggagc gggcagcggg aatcgaaccc gcatcattag cttggaaggc
      241 taaggtaata gccattatac gatgcccgct gttctaaatt cgtctgacct acgcgattca
      301 aaatatcaga gatggtggag ggagaaggat tcgaaccttc gaaggctgag ccaacagatt
      361 tacagtctgc cccctttggc cgctcgggaa cccctccacg ataattgaat acttatttac
      421 gcctgagtta atggtgccga ctaccggaat cgaactggtg acctactgat tacaagtcag
      481 ttgctctacc tactgagcta agtcggcgtt gctgtgtcgt aagcaagtga tgtgcattat
      541 agggaaattt taacagcgtg caagtgtttt ttaaaaaaat attaaaaaaa gcgttctttc
      601 gatttttaaa tatacaaaat gactattttt tgtaaaatac aacggatttt ctctgcataa
      661 ctacggcaaa ataagtgcat atattgtata gttacgccct taatttggta tttaattacc
      721 ttaatattcc agcaaaaaat tgagattttg gctatgagcc ttgaaaaaac cagcaaaatt
      781 actccttttc tcacttttga tcgccaacaa tgggctgatt tacgcaaatc cgttccattg
      841 aagctgaccg agcaagacct aaaaccgctt ttaggcttta atgaagatct ttcattagaa
      901 gaagtacgca ctatttattt accgcttgcc cgtttaattc aatactatat agaagaaaac
      961 ttaaaacgcc agacagtctt acatcgcttt ctcggcattg aaccgccaaa agtcccttac
     1021 attattagta ttgccggcag cgtatcggtt gggaaaagta cctctgcccg tattctgcaa
     1081 gctctgctct cccattaccc taaagagcga aaagtggatt taattaccac cgacggtttt
     1141 ttatatccac ttgcaacgct aaccgaaaag aacttactca agaaaaaagg ctttccggaa
     1201 tcttatgata ttcacagcct gattcgcttt gtatctgata ttaaatccgg caaacgcaat
     1261 gtgaaagctc cgatttattc acatttgacc tacgatatta tcccaaatca atttaatacg
     1321 gtggatcaac ccgatattgt gattttagaa gggctaaacg tgttacaaag tggaatgaac
     1381 tacccgtcca gcccacataa tgtatttgta tcggactttg tggatttttc tatttatgtg
     1441 gatgccgaag aaagtttgct gaaaaaatgg tatatcaacc gtttcttgaa attccgccgc
     1501 agtgcctttg ccgacccaaa ctcctatttc caccattatg cgagtttgtc cgagcaagaa
     1561 gcgattgaaa ccgcctcaac gatttgggaa gagatcaacg gcttaaattt acgccaaaat
     1621 attctcccaa gccgagagcg tgccaacctc attttaatca aagggcaaga ccacgccatt
     1681 gaaacggtaa aattacgcaa ataatatttt gcaaataatt gggctttttc gaccgcttgt
     1741 aataccttaa aatccgttga ataccactca acggattttt tatttaaatc aatgcttatt
     1801 caactatttt ttggtaagct aacgactttg agagtgattg atattaggca tatacaatga
     1861 acaaaaaatt tctacttcct ttaattctct ttttggcgtt atctgtggca tttttggttc
     1921 aactcgctcg caactcgcaa ggcgatgatc cgaaaaaatt agaatcagcc ttaattggca
     1981 aaacagttcc gagctttaat ttagaatcgg tattagatga aaaacagaca atcgaccaaa
     2041 atatcgtcaa aaccggcaaa cctcgcctgc ttaacgtgtg ggcaacttgg tgtccgactt
     2101 gttatgccga acacgaatac ttaaccattt tggcaaaaca aggggtggaa attgtcggta
     2161 ttgattataa agacgaacgc ccaaaagcga ttaaattctt agccaattac ggcaaccctt
     2221 ataaagcgat tatttttgac ccgaaaggct cactcggttt agatttaggt gtttatggtg
     2281 cacccgaaac ctttattatt gacggcaacg gcgtgattca ataccgccac gccggcgatg
     2341 taaacgacca agtgtggaac caagtgctta aaccgattta tgatggatta aagtaaatgt
     2401 ttgtatttcc tgctgacatt aagaaatcta taaaaagcaa ttatcaaaga gaatataact
     2461 ttatttttat aatagttggt ttatcaacta ttat
//
LOCUS       DANLRW010000185         2469 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.186, whole genome shotgun sequence.
ACCESSION   DANLRW010000185 DANLRW010000000
VERSION     DANLRW010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2469
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.186"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(21..305)
                     /gene="raiA"
                     /locus_tag="PXA71_002496"
     CDS             complement(21..305)
                     /gene="raiA"
                     /locus_tag="PXA71_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005823326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HDL5106550.1"
                     /translation="MSLNISSKQMDITPAIRTHIEERLAKLEKYHTQLINPHFMLIKQ
                     PNSFQVEATIGTPLGDLVAKAEHEDLYTAIFDVKKKLEGQLIKLKEKNEH"
     gene            485..1426
                     /locus_tag="PXA71_002497"
     CDS             485..1426
                     /locus_tag="PXA71_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005604585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HDL5106551.1"
                     /translation="MSEKKQLPPFQTQFLHPKYWGLWLGLGVFKLILCLPYPILVKIG
                     LGLGKLFTKLGFGKRRMRIARRNLELCFPHYSAEKVEELVEENMKSVGMAIIETGMAW
                     FWSDKRILKWSKIEGLEHLTQRDQERGILLVGVHFLTLELGARIIGLHHQGVGVYRPN
                     DNPLLDWIQFRGRVRSNKAMLDRKDVRGMIRALKNGEMIWYAPDHDYGRRNSVFVPFF
                     AVEETCTTAGSYMLLRSAPKSLVIPFSPIRNLDYSGYTVKVSPAVDFSQCQNEVETAI
                     LMNRVVEREIMAALTQYMWLHRRFKTRPNEGDQSLYD"
     gene            1522..2409
                     /gene="dapA"
                     /locus_tag="PXA71_002498"
     CDS             1522..2409
                     /gene="dapA"
                     /locus_tag="PXA71_002498"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDL5106552.1"
                     /translation="MATPLFHGSIVALVTPMTHGEVDYQDLKKLVEYHIQAGSHAIVS
                     VGTTGESTTLSIDENVKVIKKTVEFADGRIPIIAGTGSNATSEAITMTKLLANSGVAG
                     CLSVVPYYNKPTQEGMYLHYKAIAESTDLPQILYNVPGRTGSDLKPETIGRLAKIENI
                     VAVKEATGDLSRLPLIKQLAGEDFIFLSGDDATGFESMKLGGQGVISVTNNVAAADMA
                     KMCELALAGQFTEAEEINNRLMALHHDLFVESNPIPVKWAAYKLGLISEPNLRLPLTT
                     LSESAQPVVLKALQQAGLI"
BASE COUNT          755 a          384 c          519 g          811 t
ORIGIN      
        1 ttagatgtaa agtttaaaca tcaatgttca tttttctctt ttagtttaat taactgacct
       61 tctaatttct tcttaacatc aaaaattgca gtatataaat cttcatgttc agctttagcg
      121 actaaatcac ctaaaggggt gccaattgtt gcttcaactt ggaatgagtt aggttgtttt
      181 atcagcataa aatgtgggtt tatcaattgg gtgtggtatt tttctaactt agctaaacgc
      241 tcctcaatat gagtacggat tgcaggggta atgtccattt gtttgcttga aatatttaat
      301 gacataacat tttcctcttg tttagttaag gcttttgccg ttgatattct aataaccaaa
      361 atatgctcat cactccaaaa attcaagtga aaaatgaaat aagtttccaa aaatttgatc
      421 tacttaacac ttttagcagt ttttagctat aatgtaatca taatctagta tgtgagaata
      481 attaatgagt gagaaaaaac agttacctcc attccagaca caatttttac accctaaata
      541 ttggggattg tggctcggtt taggtgtttt taagttaatt ttatgtttgc cttatcctat
      601 tttagtaaaa attggtctgg gactaggtaa attgtttact aaattgggtt ttggtaaacg
      661 tcgtatgcgt attgctcgcc gtaatttaga gctctgtttt ccccattact ctgctgagaa
      721 agtagaggaa ttagtcgaag aaaatatgaa atcggttgga atggcgatta ttgaaactgg
      781 tatggcttgg ttttggtcgg ataaacgtat tcttaaatgg tctaaaatcg aagggctaga
      841 gcatttaaca cagcgtgatc aggaaagggg tattttactt gtaggggtgc attttctgac
      901 tttagaactc ggtgcaagaa ttattgggct acatcatcaa ggagtagggg tttatcgacc
      961 gaatgataat ccattattag attggataca gtttcgagga cgtgttcgct caaataaagc
     1021 gatgttagat cgtaaagatg tgcgtggaat gattcgagct ttaaaaaatg gcgagatgat
     1081 atggtacgcg cctgatcacg attatggaag acgaaatagc gtttttgtac cattttttgc
     1141 agtggaggaa acttgtacta ctgcgggtag ttatatgtta cttcgttctg ccccaaagag
     1201 tttagtgatc ccgtttagcc cgattcgaaa tttggactat tcaggctaca cagtaaaagt
     1261 cagtcctgcc gttgatttta gtcaatgtca aaatgaagtt gaaacggcta ttttaatgaa
     1321 tcgggtggta gaacgtgaaa ttatggctgc gctaactcaa tatatgtggc tacatcgccg
     1381 ttttaaaact cgcccaaatg aaggtgatca aagcctatat gattaatttt aaataatttc
     1441 aaaaaagtgc ttgcatattt aagctgaatt ttgcaatcta gcaatgttat caagcataat
     1501 aaaaaaatac aggagatgat tatggcgacc cctttatttc acggtagtat cgtagcatta
     1561 gttacaccaa tgactcatgg tgaggtagat tatcaggatt taaaaaaatt agttgagtat
     1621 catattcaag caggttctca cgctattgta tctgttggta caacaggtga atctaccaca
     1681 ttaagcattg atgaaaatgt taaggtgatt aagaaaacgg ttgaatttgc tgatggacgt
     1741 attccaatta ttgcaggaac tggttctaat gcgaccagtg aagctatcac tatgactaaa
     1801 ttattagcaa acagtggtgt agctggttgt ttaagtgtag tgccttatta caacaagcca
     1861 acgcaagagg ggatgtactt acactacaaa gcgattgcag aaagtacaga tttaccacaa
     1921 attctgtata atgtgccggg gcgaacaggg agtgatttaa aacctgaaac aatcggtcgc
     1981 ttagcgaaaa ttgagaatat tgttgctgtg aaagaagcaa cgggtgattt aagccgctta
     2041 cctttaatta agcaattagc cggtgaagat tttattttct taagtggtga tgatgctacc
     2101 ggttttgagt ctatgaaatt aggtggtcaa ggggtgatct cggtcaccaa taatgttgct
     2161 gctgctgata tggcaaaaat gtgtgagtta gctcttgccg gtcaatttac tgaagcagaa
     2221 gaaattaata accgcttaat ggcgttacac catgacttat ttgtcgaatc taacccgatt
     2281 ccggtgaaat gggctgctta taaattaggt ttaattagtg agcctaattt acgtttaccg
     2341 cttaccacac tgtctgaatc agcacagcct gtagtgttaa aagcattaca acaagcgggc
     2401 ttaatttagt tattttttgc aaatcaaatt tgaaaccggt taagttaatt ctaaccggtt
     2461 ttttcatat
//
LOCUS       DANLRW010000186         2436 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.187, whole genome shotgun sequence.
ACCESSION   DANLRW010000186 DANLRW010000000
VERSION     DANLRW010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2436
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.187"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            126..2402
                     /gene="gshAB"
                     /locus_tag="PXA71_002499"
     CDS             126..2402
                     /gene="gshAB"
                     /locus_tag="PXA71_002499"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HDL5106553.1"
                     /translation="MKLQKLIRENHLALLFQQGNFGLEKESQRVDRNGNIVTTPHPAV
                     FGNRSYHPYIQTDFAESQLELITPPNAKLEDSFRWLSAIHEVVLRSLPEEEYIFPLSM
                     PAGLPPEEQIQEAQFDNPEDVQYRQHLSKNYGKYKQMVSGVHYNFQLSTEFVEKAFAL
                     QTEYSELKAFQNALYMKLANNFLRYQWILLYLLAATPTVESQYFYEKSPLARGQLVRS
                     LRSSPYGYVNSEKVVVNHDSLESYVESLEANVANGLLIAEKEFYSNVRLRGGKKAREL
                     LENGVKYAEFRLFDLNPFAPYGIELNDAKFIHYFLLGMLWLEETSGQKEVEIGKQKLY
                     QVALEDPRTETAFRAEGEAILNQLLAMLEELSAGQESLDLVREKLAQFADPSKTLNGR
                     LIAAIEEVGSYKALGAKLAQTYKAQAFERFYALSAFDNMELSTQALFFDLIQQGIEVE
                     VLDENDQFLALKFGDHLEYVKNGNMTSRDQYISPLIMENKVVTKKVLAKAGFNVPKSV
                     EFTNLEQAVAHYPLFEGKAVVIKPKSTNYGLGITIFQQAVKNREDFAKAVEIAFREDK
                     EVMVEDYLVGTEYRFFVLGDETLAVLLRVPANVVGDGIHSVKELVERKNDDPLRGDGS
                     RSPLKKIALGEIEQLQLKEQGLTVDSVPAKGQTVQLRANSNISTGGDSIDMTDQMHES
                     YRQIAVGIAQAMGAKVCGVDLIIPDLTKPAEPNLSSWGVIEANFNPMMMMHIFPYQGK
                     SRRLTKAVIKMLFPEIGN"
BASE COUNT          738 a          500 c          543 g          655 t
ORIGIN      
        1 gaagcagtat ttctgttata accaaatcat ctacttcatt ccaataaact aaaacccact
       61 atttcactaa gtctttcatt tgtgttattg tgccgataca tttttttgac tacaaaggat
      121 agatgatgaa actacaaaaa cttatccgag aaaatcattt agcattgctg tttcaacaag
      181 ggaattttgg gcttgagaaa gagagccaac gggttgatcg caacggcaat atcgttacta
      241 ctccccaccc tgccgtattc ggtaatcgct cttaccaccc ttatattcaa accgattttg
      301 ccgaaagtca gctagagtta atcactcccc cgaatgctaa attagaagac agttttcgtt
      361 ggctctctgc tattcacgaa gtggtattgc gttcgttgcc agaggaggaa tatatcttcc
      421 ctctcagtat gccggcaggc ttgccgccgg aagagcaaat tcaagaagca caatttgaca
      481 accctgaaga tgtgcaatat cgccaacacc tttccaaaaa ctatgggaaa tataagcaaa
      541 tggtaagcgg cgtgcattat aattttcaac tttcaacgga atttgtcgaa aaagcctttg
      601 ctttacaaac ggaatatagc gagctgaaag ccttccaaaa cgcactttat atgaagttag
      661 ctaataactt tttgcgttat caatggattt tgctctattt attggctgcc acgcctacgg
      721 tggaatcgca atatttttat gaaaaatcac cgcttgcgag agggcaactt gtccgcagct
      781 tgcgttcaag cccttatggt tatgtgaatt cggaaaaagt ggtggttaat cacgacagct
      841 tagaaagcta tgttgaaagc cttgaagcca atgttgccaa cggattatta attgccgaaa
      901 aagaattcta ttccaatgtg cgtttacgag ggggcaaaaa agcccgtgag ctattggaaa
      961 acggtgtgaa atacgccgaa ttccgtttat ttgatttaaa ccctttcgcc ccttacggca
     1021 ttgagctgaa tgatgccaaa tttatccatt atttcttact cggtatgctt tggctggagg
     1081 aaacaagcgg tcaaaaagag gtcgaaatcg gcaaacagaa actttaccaa gtcgcacttg
     1141 aagatccaag aacagaaacc gctttccgtg ccgaaggtga agccatttta aatcaacttt
     1201 tagcgatgct tgaagaatta tctgccggtc aggaaagcct agatttggtg cgggaaaaat
     1261 tagctcaatt tgctgatcca agcaaaaccc tgaacggacg tttaattgcc gcaatagagg
     1321 aagtcggcag ttataaagca ttgggggcta aattggctca aacctataag gcacaagcct
     1381 ttgagcgttt ttatgcgtta tcggcatttg ataatatgga actttccact caagccctgt
     1441 tttttgattt gatccaacaa gggattgagg tggaagtact ggacgaaaac gatcaattcc
     1501 tcgccctaaa atttggcgat catttggaat atgtgaaaaa cggcaatatg accagccgag
     1561 atcaatacat ttcaccgctg attatggaaa acaaagtggt gacgaaaaaa gtattggcaa
     1621 aagccggctt taacgtgccg aaaagcgttg aatttaccaa ccttgaacag gctgtggcac
     1681 attatccgct atttgaaggc aaagcggtgg tgattaagcc gaaatcgact aactatggtt
     1741 tagggattac catcttccaa caagcggtca aaaatcgaga agattttgca aaagcggttg
     1801 aaattgcgtt ccgtgaagac aaagaggtga tggtggaaga ctatttagtc ggtactgaat
     1861 accgcttctt tgtactgggc gatgaaaccc ttgcggtgtt actgcgtgta ccggcgaatg
     1921 tagtgggaga tggcattcac agtgtaaaag agctggtgga gcgtaaaaat gacgatccgc
     1981 tacgtggcga tggctctcgt agcccgttga aaaaaattgc cttaggtgaa attgagcagt
     2041 tacaacttaa agagcaaggc ttaaccgtag attccgtacc ggcgaaaggt caaacagttc
     2101 aactgcgtgc caattccaac atcagcaccg gcggcgattc gattgatatg accgaccaaa
     2161 tgcacgaaag ctatagacaa attgcagtgg gaattgctca ggcaatgggg gctaaagtgt
     2221 gtggggtgga tttgatcatt cctgatctca ccaaacctgc cgagccaaat ttaagctctt
     2281 ggggcgtcat tgaggcaaac ttcaacccaa tgatgatgat gcacattttc ccttaccaag
     2341 gcaaatcccg ccgtttaacc aaagcggtaa tcaaaatgct gtttcctgag ataggcaatt
     2401 aaattttctc tctatacctc ttttaaggag aattta
//
LOCUS       DANLRW010000187         2342 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.188, whole genome shotgun sequence.
ACCESSION   DANLRW010000187 DANLRW010000000
VERSION     DANLRW010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.188"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            239..1810
                     /gene="guaA"
                     /locus_tag="PXA71_002500"
     CDS             239..1810
                     /gene="guaA"
                     /locus_tag="PXA71_002500"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012510808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDL5106554.1"
                     /translation="MTNIHHHKILILDFGSQYTQLIARRVREIGVYCELWAWDVTEEQ
                     IREFNPTGIILSGGPESTTEENSPRAPEYVFNAGLPVLGICYGMQTMAMQLGGLTETS
                     DHREFGYASVALKSADQLFANLNDDLTACEPKLDVWMSHGDKVTKLPPHFTITGVTPT
                     CPIAAMSDESRRFYGVQFHPEVTHTKQGLALLKNFVVGICGCETNWTAENIIEDAVKR
                     IREQVGDDEVILGLSGGVDSSVTALLLHRAIGKNLHCVFVDNGLLRLNEGDQVMEMFG
                     NKFGLNIVRVNAEDRFLEALKGLDEPEAKRKTIGKVFVDVFDDESKKLSSVKWLAQGT
                     IYPDVIESAASKTGKAHVIKSHHNVGGLPDYMKLGLVEPLRELFKDEVRKIGLALGLP
                     AEMLNRHPFPGPGLGVRVLGEIKKEYCDLLRKADAIFIEELHKAGWYYKVSQAFTVFL
                     PVKSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDLLGKISNRIINEVNGISRV
                     VYDVSGKPPATIEWE"
     gene            complement(1971..2330)
                     /locus_tag="PXA71_002501"
     CDS             complement(1971..2330)
                     /locus_tag="PXA71_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017806522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcB family protein"
                     /protein_id="HDL5106555.1"
                     /translation="MAAFIVGAVIGCTLVRVFNSSVRKQHELEKELKQTKTQVDEQKQ
                     KLEQHFEQSAQLLSSLASDYKKLYTHLAQSSEKLLPEASKNITFFQQTKLPIPAEKTE
                     EDQPRDYSEGSSGLLKS"
BASE COUNT          662 a          500 c          550 g          630 t
ORIGIN      
        1 ttattaaagt tggacacaga aagaaatata aatctgtatt ttcaagcaat acataaatgt
       61 actcctgata aaattcatac aaaaatcatc aatattccaa gtgaaggtaa tgcaaaagaa
      121 ctttggactg caacaggttg taataaaacg caatctttta ttattacata tagaaacgat
      181 ggggtaggcg gcacttttat taacatgacc acaacgccat aatttaaagg aaattacaat
      241 gacaaacatc caccaccaca aaattttaat tttagacttc ggttcacaat atactcagct
      301 tatcgcacgc cgtgtgcggg agattggggt ttactgcgag ctttgggctt gggacgtaac
      361 ggaagagcag atccgtgaat ttaacccaac ggggattatt ctttcaggag gtcctgaaag
      421 caccactgag gaaaacagcc cacgagcgcc ggagtatgtg tttaacgctg gtctgccagt
      481 gctgggcatt tgctacggaa tgcagacaat ggcgatgcag ttgggcggtt taaccgaaac
      541 gtccgaccac cgtgaatttg gctatgcctc ggtggctctc aaatctgccg atcaactttt
      601 tgcaaattta aacgatgatt tgaccgcttg cgagccaaaa ttggacgtgt ggatgagtca
      661 cggcgacaaa gtcaccaaat taccaccgca ctttaccatc acaggcgtta ccccaacctg
      721 cccgattgcc gcgatgtcgg acgaaagccg ccgtttctat ggcgtgcagt tccaccccga
      781 agtgacccac accaaacaag gcttggcgtt gctgaaaaac ttcgtggtcg gcatttgcgg
      841 ctgtgaaacg aactggacgg cagaaaacat cattgaagat gcggtgaaac gcattcgtga
      901 gcaagtgggc gatgacgagg tgattttagg tttgtcgggc ggggtggatt cctccgtcac
      961 cgccttgcta ttacatcgtg ctatcggtaa aaacctgcac tgcgtatttg tggataacgg
     1021 cttgctccgc ttgaacgaag gcgatcaagt catggaaatg ttcggcaaca aattcggttt
     1081 gaacattgtg cgagtgaatg ccgaagaccg tttcttagaa gcgttaaaag gcttagacga
     1141 accggaagct aaacgcaaaa ccattggtaa agtgtttgtg gacgtgtttg atgacgaaag
     1201 caaaaaactt agctcggtca aatggcttgc acaaggcacg atctaccctg atgtgattga
     1261 atccgccgcc agcaaaaccg gcaaagccca cgtgattaaa tcacaccata acgttggcgg
     1321 cttgccggat tatatgaagc tcggcttagt cgaaccgttg cgtgaattgt ttaaagacga
     1381 agtgcgcaaa atcggcttgg cactcggctt accggctgaa atgctcaacc gccacccgtt
     1441 ccccggcccg ggcttaggcg tgcgtgtgct gggcgaaatc aaaaaagagt actgcgattt
     1501 actgcgtaaa gccgatgcga tcttcatcga agaactgcac aaagccggct ggtactacaa
     1561 agtcagccaa gctttcacgg tattcttgcc ggtgaaatcg gtgggcgtaa tgggcgatgg
     1621 acgcaaatat gactgggtcg tcagcctgcg tgcggtggaa accatcgact ttatgaccgc
     1681 tcactgggcg cacttgccgt atgatctatt aggcaaaatc tccaaccgca ttattaacga
     1741 agtgaacggt atttcccgtg tggtgtatga cgtgagcgga aaaccaccgg caaccattga
     1801 gtgggaataa ctcttacaaa ataggcttct tataacctaa gttcagtatc taaagctgaa
     1861 aaatgttgtt aactgcttaa tgtagcggtt tagaataaag gattgattcc aacggaatca
     1921 atccttaaac taagtgcctt ttagtaaaac taaatattca atttttagtt ttatgatttc
     1981 agtaagccag atgaaccttc ggaataatct ctaggttgat cttcttccgt tttttctgcc
     2041 ggaataggta atttggtttg ttggaaaaag gtaatatttt ttgatgcttc tggtaatagc
     2101 ttttcagagc tttgtgctaa atgggtataa agctttttat aatcagaagc tagacttgaa
     2161 agtaattggg ctgattgctc aaagtgttgt tcaagttttt gtttttgctc atccacttga
     2221 gttttggttt gcttcaactc tttttccagt tcatgctgtt ttctgacact actgttaaat
     2281 actctaacta gagtgcaacc tattacagca cctacaataa atgctgccat aatggctgcc
     2341 ca
//
LOCUS       DANLRW010000188         2335 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.189, whole genome shotgun sequence.
ACCESSION   DANLRW010000188 DANLRW010000000
VERSION     DANLRW010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2335
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.189"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..1991
                     /locus_tag="PXA71_002502"
     CDS             <1..1991
                     /locus_tag="PXA71_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HDL5106556.1"
                     /translation="FTAEWTSERAYLLVGVNGTYETTDWLAFHSVKLEKGNVATDWTP
                     APEDMDSAVSAVSAKIDTIQETLANADSALSSRIDAVTASVGSNLAKITQVSNAVAGV
                     DGKLSATHTIKTETIAGGRKAIAGIALGAAADNRNAESSVIVMADKFEVVKNAQDGQP
                     VRLFGVAQNKVAINGNLIATGTIKGSHIDADSVRAGILTAGAIRTEHLAAGQISADKL
                     AIGLGGNLLVNPIFATPDLSIAPFGWNYWRGEVGDRLNIDTRNIFNRNEQDNYGLKNG
                     GLPNELVFSMRYSTTKETSDTGRIGWLSQDINVVPNKKYIASVWLACHRGQAKLVIEN
                     IEKPGGAYLGRIGNSEVITGYSAHQGEFKNMKRVKVVFTAPTSGCIRFALRLDNIQGK
                     ANPFLFARRPMLEEASDNVTDITQPSPWQNAGVTAIHGGSIVTNTVTAQQIAANTITA
                     NEIATGTIAARNMAANSINASHIVGSSITADKLNVNNLAAISANLGKVTAGTITGTTI
                     TGNTISGGSINGTTISGTTISGGTIKGARLEGATGKFTGELEVSQLIGGGVIEQVTGK
                     LKYSHRNRIYEGQEHGENSSSPIYRHEYIYKATVTINAAPTRRYIEIIGSESFILEAN
                     QSITKTIEKSLNRNASGSSLDFIVLAYSISTAKYISIS"
     gene            2114..>2335
                     /locus_tag="PXA71_002503"
     CDS             2114..>2335
                     /locus_tag="PXA71_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106557.1"
                     /translation="MTTFNKILNPMYSTIASYSTQDDGSLNAKYVVGTGDDTDGEVTN
                     FVIITSEYKYIDAQSAKEITDAPLTKEDIG"
BASE COUNT          740 a          447 c          530 g          618 t
ORIGIN      
        1 cctttactgc cgaatggaca agtgagcgag cctatctgct tgttggtgta aatggtactt
       61 atgagaccac agattggtta gcgtttcaca gcgtcaaact tgaaaaaggc aacgtagcca
      121 cagactggac gccagcacct gaagatatgg acagtgcggt tagtgcagtt tcggctaaaa
      181 ttgatactat tcaggagact ttagcgaatg ccgactctgc attaagctct cgtattgatg
      241 ccgttactgc ttctgttggc tcaaacttgg caaaaattac tcaagtgagt aatgctgtag
      301 ccggtgtgga cggcaaatta tctgctaccc ataccatcaa aaccgaaacc attgccggtg
      361 gacgtaaagc gattgccggt atcgcacttg gtgccgcggc agacaatcgc aatgcagaat
      421 cctctgtcat tgtaatggca gacaaatttg aggtagtaaa aaatgctcaa gacggccaac
      481 cggtacgatt gtttggtgtg gctcaaaata aagttgcgat taatgggaat ttaattgcaa
      541 caggtacaat taaaggtagc cacattgatg cagactcagt aagagccgga atattgacgg
      601 cgggagctat ccgtacggaa cacctggcag cagggcaaat atcggcggat aagttagcga
      661 ttgggctagg tgggaatttg ctggttaatc ctatttttgc aacacccgat ttgtcaatag
      721 ctccgtttgg ctggaactac tggcgaggag aagttggtga tcggctaaat attgacaccc
      781 gtaatatttt caataggaat gaacaagata attacggact aaaaaatgga ggactaccaa
      841 atgagttagt attttcgatg cggtatagca ctacaaagga aacctctgat actgggcgaa
      901 ttgggtggtt atctcaggat attaatgttg tgcctaataa aaaatatatt gcctccgtat
      961 ggttagcttg tcatcgtggg caagctaaat tagtcattga gaatatcgaa aaacctggtg
     1021 gtgcttactt aggtcggata ggcaacagcg aggtaattac tggctatagt gctcatcaag
     1081 gcgaatttaa aaatatgaaa cgggttaagg ttgtatttac tgcacctact tcaggctgta
     1141 ttcgtttcgc attacgatta gataatattc aaggtaaagc taatccattt ttatttgctc
     1201 gtaggccaat gcttgaggag gctagtgata atgttacaga tatcactcag cctagccctt
     1261 ggcaaaatgc cggtgtaacc gctatccacg gtggatcaat agttactaat accgttactg
     1321 ctcaacaaat tgcagcaaat accattaccg ccaacgaaat cgcaaccggc acgattgcag
     1381 ctcgaaatat ggcagcaaac tcgattaatg caagtcatat tgtggggagt tcgatcactg
     1441 cggataagct aaatgtaaac aatttagcgg caatatcggc aaatcttggt aaggtaactg
     1501 ctggtacaat tacaggtacg acaattactg gtaatacaat tagtggcgga agtattaatg
     1561 gtacaacaat tagcggtaca actatctctg gcggcacaat aaagggtgca agattggagg
     1621 gggctactgg caaatttacc ggcgaacttg aagtatctca attaataggg ggaggtgtta
     1681 tagagcaggt tacaggcaaa ttaaaatatt cacatcgtaa tcgcatttat gaggggcaag
     1741 aacatggaga aaactcctcc tctccaattt atagacacga atatatctat aaagcaactg
     1801 tcaccataaa tgcagcgccg acaaggaggt atattgaaat catcggaagt gagtcattca
     1861 ttttagaagc aaatcaatca atcacaaaaa caatagagaa atcattaaat agaaatgcaa
     1921 gtggtagctc tttagatttt attgttttag cctattccat ttcgacggct aaatatatct
     1981 ctatcagtta gttatcgcct caatgtagta ctgagtgcgg atagccacag cttttttaaa
     2041 tatccaaaac caaccgcttg caggtcaatt caggcgattg tttttatttc aactatcgat
     2101 aaaaggaaaa attatgacaa cttttaacaa aatcttaaac ccaatgtatt ccaccatcgc
     2161 aagctactca acgcaagatg acggctcgct caatgctaaa tatgtggtcg gtacaggcga
     2221 tgataccgat ggagaagtaa caaactttgt aatcatcaca agtgagtaca aatacattga
     2281 tgcacagtcc gccaaggaga ttactgatgc accgctaaca aaagaggata ttggc
//
LOCUS       DANLRW010000189         2244 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.190, whole genome shotgun sequence.
ACCESSION   DANLRW010000189 DANLRW010000000
VERSION     DANLRW010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2244
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.190"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(401..691)
                     /locus_tag="PXA71_002504"
     CDS             complement(401..691)
                     /locus_tag="PXA71_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106558.1"
                     /translation="MNNLSEFKLRYINNPYSNKDTFFIFDELSILLKSLTSDELKKIG
                     TAKNLADRQLNKQRKRCKRYVSEAYRLVEDNKEPYSKFFNHDGITAYNIKAF"
     gene            complement(741..1505)
                     /locus_tag="PXA71_002505"
     CDS             complement(741..1505)
                     /locus_tag="PXA71_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005704989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5106559.1"
                     /translation="MPNITPKLVINALEPAKEKGIGDTLKRAIRLLNEVMNFAVNADV
                     IEFNKCQNVGSNFSVAKSEHNPTIHPKELPQFLAALRDYNLSFQTKMLIKWQLLTMTR
                     SREASETLWSEIDLEAKTWTISAERMKMKRPHVIPLSRQAVEILERMRKITGNSPFVF
                     QSEMKPRQPMNSQTANRAIGLLGYAGTLTAHGMRSIASTYLNEQLVNYDVVEACLAHV
                     IKDQTRKAYNRSDYLDQRVDVMQQWADYVESCSTGI"
     gene            complement(1474..1953)
                     /locus_tag="PXA71_002506"
     CDS             complement(1474..1953)
                     /locus_tag="PXA71_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HDL5106560.1"
                     /translation="MARVTTELNNTQIKNAKAQTKDYKLMDGKGLFLLVKKNGSKLWR
                     FRYKKPITGKESDLGIGSYPETTLAQARTIREEYRALLAENIDPLEHRQRLEAEALAE
                     IENTFYKVCLKWRDKCESRVKNGELQALTLKKNWRILEKYLLPCRLLYSKHHAKTSY"
BASE COUNT          653 a          412 c          409 g          770 t
ORIGIN      
        1 gttcatcgcc cctaaaattg tcctattggc ataggacaat ataggacaat ataggacaat
       61 tctaggacaa aatagtaaac tgttcatttt ttgataggac aaaaacccct gaaaatagga
      121 caaaaacacc ctaaaatagg acaatttcag cgttaatagg acaaaaattc aatattaaat
      181 cattgatata taaaggttta gtaaaaattg tcctaattgt cctataaaaa aacagctatt
      241 tttctatatg atttttttat gattgtttgg cggaattttg gttgaaattt aaatgtaaat
      301 tatatgcttc ataatttcat attttatggg ttttgtgatt gtgatcataa tacacattaa
      361 agaggtttca ggacgatata aaaaaggctc tctaaataga ttagaaagcc ttgatattgt
      421 atgcggttat cccatcgtgg ttgaaaaact tagagtaagg ttctttatta tcttcaacaa
      481 gacgataagc ctctgataca taccttttac atctttttct ttgcttatta agttgtctat
      541 ctgccagatt tttagctgtt cctattttct ttaattcatc ggaagtcagt gattttaata
      601 gtatgcttaa ttcatcaaat ataaaaaatg tatctttatt agaataaggg ttattgatat
      661 atcgtaattt aaactcagaa aggttattca tatttgtaca cctctaatta aacaagcggt
      721 caaattccgc caaaaattta ctaaatcccc gttgagcagc tttctacata atccgcccat
      781 tgctgcatta catctacacg ctgatctaaa taatcagaac ggttataagc ctttcgggtt
      841 tggtctttga taacgtgagc taaacaagcc tctactacat cataattgac taactgctca
      901 ttcaaatagg ttgaggcaat agaccgcata ccgtgagccg ttagagtgcc ggcatagcct
      961 aataagccta tggctctgtt ggcggtttgg ctgttcatcg gttggcgtgg tttcatttcg
     1021 ctttgaaaaa caaatgggct attccctgtg atttttcgca ttctttctaa aatttcgacc
     1081 gcttgccgtg aaagagggat aacgtgaggg cgtttcatct tcattctttc ggctgaaatg
     1141 gtccacgttt tcgcctctaa atcaatttca ctccacaacg tttcgcttgc ctctcgtgag
     1201 cgtgtcattg ttaatagttg ccatttaatc aacatcttag tttgaaatga taggttgtaa
     1261 tcacgcaatg cagctaaaaa ttgaggtagc tcttttgggt gtatcgttgg gttatgttca
     1321 gatttcgcta cgctaaaatt tgagcctaca ttttggcatt tgttaaactc gataacgtcc
     1381 gcatttaccg caaaattcat cacttcatta agtagcctaa ttgctcgttt aagggtgtcg
     1441 cctatgcctt tttctttagc aggctctaaa gcattaataa ctagttttgg cgtgatgttt
     1501 ggaatagagt agtcggcaag gcaaaagata cttttcaagg attcgccaat tcttcttcag
     1561 cgttaaggct tgaagttcgc cattttttac acggctttcg catttatcac gccatttcaa
     1621 gcagacttta taaaaggtgt tttctatttc ggctaacgct tcagcctcta atctttggcg
     1681 gtgttcgagt gggtcgatat tttccgctag taatgcccta tattcttctc taatcgttct
     1741 tgcttgggct agggtagttt cggggtaact gcctatgcct aaatcgctct ctttgccggt
     1801 aatcggcttt ttatacctaa accgccataa cttcgagccg tttttcttaa ccagcaaaaa
     1861 cagccccttg ccgtccatta gcttgtagtc tttggtttga gcctttgcgt ttttgatttg
     1921 agtgttattt aattctgtgg taactctagc cataaaaatt tacctaaaat cgcattgtgc
     1981 tttatcagaa tcataaggga tttaagggta tgggtttcat acccttttac gttataccct
     2041 caaatatacc cttaaaataa ggggatgtaa acgcaagaac acgaaagaat acgaatgaag
     2101 aaataattta aaattgctct aaagccagta tcatcaatgg ttttgcgtaa gaatgcgaat
     2161 gaagaaataa gagtggaaaa tttaagttgg tcccagcctc ctctgaactc gcttataact
     2221 tattgattta taaagagata aaat
//
LOCUS       DANLRW010000190         2132 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.191, whole genome shotgun sequence.
ACCESSION   DANLRW010000190 DANLRW010000000
VERSION     DANLRW010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2132
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.191"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            89..820
                     /locus_tag="PXA71_002507"
     CDS             89..820
                     /locus_tag="PXA71_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5106561.1"
                     /translation="MRPLKEIRYDNLLRLIDEAKSTSDLANRTGIAVSYLLQIKNKNA
                     IQNGKPKGIGDKIAAKLEDGMNKPRGWLDQIHSEQSNLINSRIGNEEQKLQEQDLNDF
                     IIIDVLDVSASAGFGSSSELVEVVNQMRYVPEQFYSLFRNMAPRYIRIINLSGDSMYP
                     TFSSGDMLFVDISVNEFTGDGVYVFTYKGHLYVKRLQNTGDQILVISDNKLYEKWSIT
                     EENQDQLFIHARVKVHQSQQLNFIG"
     gene            825..1328
                     /locus_tag="PXA71_002508"
     CDS             825..1328
                     /locus_tag="PXA71_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4365 domain-containing protein"
                     /protein_id="HDL5106562.1"
                     /translation="MLSPTQQMEQFNIAYVLAITANAGFNHAVPVVDNHSVDLAISAE
                     FPTEEGKRSDPEIKLQLKSEGDLHIKNGLVSYKLKKKNYDDLRKNCANPRYLIVCDLP
                     KKTTQWLSHKKKFMTLKRHCYWVSLKGFPATTNRSSVTLTFPENQRFTTDVLIKMIEY
                     ARVGETL"
     gene            1325..>2132
                     /locus_tag="PXA71_002509"
     CDS             1325..>2132
                     /locus_tag="PXA71_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106563.1"
                     /translation="MKNNKTDTLLFLEQFARYLTAKSWQIAFELEYAVIWQKDLGHRI
                     LEVTLPKPIAEDREEVLQKALEKLAKIEEKNVETLKLNISNQYTDKLSVRVIGESVKD
                     GTIPLNEGVKLFEKTKHLINALALSAKKKKAAFGHNSGGKDVAEFMSQVRLGQTQIGS
                     YIVNLSYPVENIEIKEQNEIIQAISFSRSVSHNLVNSLNKLKEKITHYDHNPTIFAEL
                     IPEGVSHNLCEAIIGLSGSDQQRKIEIKLQVGEISDESMPSETFNIKFSQK"
BASE COUNT          802 a          321 c          402 g          607 t
ORIGIN      
        1 taaagataaa tcaaaatcaa caaaatagat catatttaaa tgttatcgaa atgataataa
       61 aataaagcaa atagtatgga ggtgggatat gagaccccta aaagaaatta gatacgataa
      121 tttattacgc ttgatagatg aggctaaaag cacatctgat ttagctaatc gaacaggtat
      181 cgcagtaagc tatctactac aaatcaaaaa taaaaatgct attcagaacg gtaagccaaa
      241 aggcattggt gacaagattg ccgccaaatt agaagatggg atgaataaac ctagaggctg
      301 gttagatcaa atacattcag agcaatcaaa ccttatcaat tcaaggatag gcaatgaaga
      361 acaaaaattg caggagcaag atttaaatga ctttatcata attgatgtat tagatgtcag
      421 tgctagtgca ggcttcggct caagcagtga attagttgaa gtagtaaatc aaatgcgtta
      481 tgtgcctgag caattttatt ccctctttcg gaatatggca cctcgataca tcagaattat
      541 caatttaagt ggtgattcta tgtacccgac attttcctcg ggagatatgc tttttgttga
      601 tattagcgta aatgagttta ccggcgatgg tgtttatgta tttacataca aaggacattt
      661 gtatgtaaaa agattacaaa atacaggcga tcaaatatta gtgatttcag ataacaaact
      721 ctatgaaaag tggagtatca ctgaagaaaa tcaagatcag ctatttatcc atgctagagt
      781 aaaagttcac caaagccaac agttgaattt tattggatag aaatatgctt tcacctacac
      841 aacaaatgga acaatttaat attgcttatg tgttagctat tactgctaat gcaggcttta
      901 atcatgcggt accagtagta gacaatcata gtgttgatct tgcaatttct gcagaatttc
      961 cgactgaaga agggaaaaga agtgatccgg aaataaagct acaacttaaa tcagaaggag
     1021 atcttcatat taaaaatggt ctggtaagct ataaactcaa aaagaaaaac tatgatgatt
     1081 taaggaaaaa ttgtgcgaac cctcgctact taattgtatg tgacttgcct aaaaaaacga
     1141 ctcaatggct ctcacataag aaaaaattta tgactttaaa aagacattgt tattgggtat
     1201 cattaaaagg ctttccggca acaacaaata gaagtagtgt taccctcaca tttccagaaa
     1261 atcaacgatt taccactgat gtactcatta aaatgattga atacgctaga gtaggagaaa
     1321 ctttatgaaa aacaataaaa cggacacgtt actgtttctc gaacagtttg ctcgctattt
     1381 aactgccaaa agctggcaaa ttgcgtttga attagagtat gcggttattt ggcagaaaga
     1441 tcttggacat cgaattttag aggttacatt accaaagcca attgctgaag atagagagga
     1501 agtgttgcag aaagcacttg aaaagctcgc caaaattgaa gaaaaaaacg tagaaacgtt
     1561 aaagcttaat atttcaaatc aatatacaga caagctatct gttagagtga ttggcgaaag
     1621 cgttaaagat gggacaattc cgctaaacga aggtgtaaaa ttatttgaaa aaaccaaaca
     1681 tttaattaat gccttggcac tttcagctaa aaagaaaaag gcagcttttg gacataactc
     1741 aggtggcaaa gatgtagcag agtttatgtc tcaagttcgt ttagggcaaa ctcaaattgg
     1801 aagctatatt gtcaatttat cttatcctgt tgagaatatt gaaattaagg aacagaatga
     1861 aattattcag gcaatttcat tttctcggag tgtatcgcat aatttggtta acagcctgaa
     1921 caagctgaaa gaaaaaatta ctcattatga tcacaatccg actatttttg ctgaattgat
     1981 acctgaagga gtaagtcata atctttgtga agctattatt ggattaagtg gttcagacca
     2041 acaaagaaaa atcgaaatta aactccaagt gggtgaaatt agtgatgaat caatgccttc
     2101 tgaaacattt aatattaaat tttctcaaaa ag
//
LOCUS       DANLRW010000191         2085 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.192, whole genome shotgun sequence.
ACCESSION   DANLRW010000191 DANLRW010000000
VERSION     DANLRW010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.192"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            31..288
                     /gene="ptsH"
                     /locus_tag="PXA71_002510"
     CDS             31..288
                     /gene="ptsH"
                     /locus_tag="PXA71_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HDL5106564.1"
                     /translation="MYSKDVVITAPNGLHTRPAAEFVKAAKGFASDITVTSGGKSASA
                     KSLFKLQTLGLTQGTTITISADGEDEQKAVDFLVDLIPTLE"
     gene            410..>2085
                     /gene="ptsI"
                     /locus_tag="PXA71_002511"
     CDS             410..>2085
                     /gene="ptsI"
                     /locus_tag="PXA71_002511"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HDL5106565.1"
                     /translation="MITGIAASPGAVFGKALVLKEEPIVLNTRKITESEVEAEKAKFF
                     TGREKAAAQLTAIKEKARRTLGEEKEAIFEGHLMILEDEELEEEILSYLTDNLVTADV
                     AASKVIEMQASMLAEIDDEYLKERAGDIRDIGNRLVRNILNMNIVDLGDIQDEVILVA
                     YDLTPSETAQLNLDKVLGFITDVGGRTSHTSIMARSLELPAIVGTNNVTSLVKTGDFL
                     ILDAVNNEVHLNPSEEKIANFKALQEKLNAEKEELAKLKELPAQTLDGHKVDVAGNIG
                     TIRDVEGVLRNGGEAVGLYRTEFLFMDRTQLPGEEEQFQAYKEIVEAMNGQMVILRTM
                     DIGGDKELPYLDLPKEMNPFLGWRAVRIGFTRREILDTQLRAVLRASAFGNLAVMFPM
                     IISVEEIRLLKSIVAELKDQLRAEGHAFDENLKLGIMVETPSAAVNARHLAKEADFFS
                     IGTNDLTQYTLAVDRGNEIIAHLYNPLSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     VRATALLLGMGLDEFSMSGISVPHVKKLIRSINFADAKALADEALAQPTAA"
BASE COUNT          647 a          354 c          454 g          630 t
ORIGIN      
        1 tttaactttc aaatttaaga ggaagatttt atgtactcaa aagatgttgt tattaccgct
       61 ccaaatggtt tacacactcg cccagcggct gaatttgtaa aagcagctaa aggttttgct
      121 tctgatatca ctgtgacttc aggtggtaaa agtgcaagtg caaaaagctt attcaaatta
      181 caaacattag gtttgactca aggcacaaca attacaattt ctgcggacgg cgaagatgag
      241 caaaaagcag ttgatttctt agttgatttg attcctactt tagaataatt tttctattct
      301 cggatttaag atttatgtca ctttattgta gcttaataag ctacaataaa gtgttttgct
      361 atgtaacatc cagatgattt ttacatcatc ttaaattaag gacacaatta tgattacagg
      421 tatcgcagct tcccctggtg cagtatttgg aaaagcattg gttttaaaag aagagccgat
      481 tgtactaaat actcgcaaaa ttactgaaag cgaagttgag gcagaaaaag caaaattctt
      541 tacaggccgc gaaaaagcag ctgctcaatt aaccgcgatt aaagaaaaag ctcgccgtac
      601 attaggtgag gaaaaagagg cgattttcga aggccacttg atgatcttag aagatgaaga
      661 gcttgaagaa gaaattttga gttaccttac tgataatctt gtgactgcgg atgttgcagc
      721 aagtaaagtg attgagatgc aggcttcaat gcttgcggaa attgacgatg aatatttaaa
      781 agaacgtgca ggtgatattc gtgatattgg taaccgcttg gtacgcaata ttttaaatat
      841 gaatatcgta gatcttggtg atattcaaga tgaagttatt ttagtcgctt atgacttaac
      901 cccttccgaa acagctcaat taaatttaga taaagtatta ggctttatta ccgatgtcgg
      961 tggtcgtact tctcacactt ctattatggc tcgttcccta gagcttcctg ccattgttgg
     1021 tactaacaat gttacttccc tagttaaaac tggtgatttt ctgattttag atgcagtgaa
     1081 caatgaagta catttaaatc catcggaaga aaaaatcgct aatttcaaag cattacaaga
     1141 gaaattaaat gcggaaaaag aagaattagc caaattaaaa gagttgcctg ctcaaacatt
     1201 agatggccat aaagttgatg tggcagggaa tatcggtact atccgtgatg tggaaggtgt
     1261 attacgcaac ggtggtgaag cggttggttt ataccgtact gagtttttgt ttatggatcg
     1321 tactcaatta ccgggagaag aagagcaatt tcaagcctac aaagagattg ttgaagcaat
     1381 gaatggtcaa atggtcattc tgcgtacgat ggatatcgga ggtgataaag agttaccata
     1441 ccttgattta ccgaaagaaa tgaacccatt cttaggttgg cgcgcggtgc gtatcggttt
     1501 cacccgccgt gaaattttag atactcagtt acgtgcggta ttacgtgctt ctgcgttcgg
     1561 taatttagcg gtaatgttcc cgatgattat ttcggtggaa gaaatccgtt tattaaaatc
     1621 catcgttgcg gaattgaaag atcaattacg tgcagaaggt cacgcttttg atgagaactt
     1681 aaaactaggt attatggtgg aaaccccatc agcagcggta aatgcacgtc atcttgcaaa
     1741 agaagccgac ttctttagta ttggtactaa tgacttaacc caatatacac ttgcggtaga
     1801 tcgtggtaat gaaattattg ctcatttata taacccatta agcccatcag tcttaaactt
     1861 aatcaagcaa gttattgatg cttcacacgc tgaaggcaaa tggacaggta tgtgtggtga
     1921 attagccggt gacgtgcgtg caactgcgtt gttgctcggt atgggattag atgaatttag
     1981 tatgagcggt atctctgtgc cacacgttaa aaaactcatt cgctcaatta attttgccga
     2041 tgctaaagca ttagctgatg aggcgcttgc tcagccaact gctgc
//
LOCUS       DANLRW010000192         2062 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.193, whole genome shotgun sequence.
ACCESSION   DANLRW010000192 DANLRW010000000
VERSION     DANLRW010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2062
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.193"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(85..2046)
                     /gene="recD"
                     /locus_tag="PXA71_002512"
     CDS             complement(85..2046)
                     /gene="recD"
                     /locus_tag="PXA71_002512"
                     /EC_number="3.1.11.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit alpha"
                     /protein_id="HDL5106566.1"
                     /translation="MLNLLLELKQEKAISDLNYQFARFIDNKQKPYGYSPLEQDLAVL
                     AAALVSYQVGLGHTALRLENLSLSSLFELNSKPQTYHLLEQILQKIEQIPPLEWQSVL
                     KNHIAFSYSPETIKPMLFQNSLLYFYRYWQAEHRIAGYLQQAVDFSEKFANTELNQSI
                     LNQLFTGKAQTIDWQKIAVATALEKQFSLISGGPGTGKTTTVVKLLLGLQLKQQALQK
                     PYLQIALAAPTGKAAARMKESLESKLAEEKGLSEELKRSIPTEAVTIHRLLGARPLTE
                     KTKYHTKNPWHYDLVVLDEASMIDLSMMEKVVQALKPNSRLIMLGDKDQLASVEAGSI
                     MGELGSFIDNGYSQSHCDYLKAVTDYQIEAGNALPIGDCLSHLKHSYRFGEKAWIGEL
                     ANAVNDQKINLSWEIFDKYKNSDKLENFCYPETKETTDKSSWIEKSVQMVVDKAVELY
                     RDYLQAVQKREKNPDSVSVKAIFEKFQKVRILSALRVSELGVERLNMAIAEGLRKASL
                     VKFNHSRDRYIGKPILMTENMPINSIASGDVGIILPDENGESRVYFDSLQENREHHSL
                     PLGRVSNYEAAYIMTVHKSQGSEFEHTVLVLPHSISPVLTKELIYTAITRAKDKFTLF
                     GSEKVWKYSVGAKTERQSGLKEQIRGKFS"
BASE COUNT          581 a          448 c          359 g          674 t
ORIGIN      
        1 aaacaaaaac aacgcaagcg gtttttgtaa aaaatttgaa aaaaatgacc gcttgcgtat
       61 ttttacggca aaacgagtat taatttagct aaacttgcct cttatttgtt cttttagccc
      121 actttgtctt tcggttttgg caccaacact gtatttccaa actttttcgc taccaaataa
      181 ggtaaattta tcttttgccc ttgtgattgc ggtgtaaatc aactctttcg tcagcaccgg
      241 ggaaatcgaa tggggcaaca ccaataccgt atgttcaaat tcagaacctt gcgatttatg
      301 cacagtcata atataagctg cttcataatt tgaaacccta cctagaggca aactatggtg
      361 ttctctattt tcctgtaagg aatcaaaata aactcggctt tctccatttt cgtccggcaa
      421 aatgatgccg acatcaccgc tggctatgct atttatcggc atattttctg tcattaaaat
      481 cggttttccg atatagcggt ctcggctatg attaaatttc actaagctag ctttccgcaa
      541 gccttccgca atcgccatat taagacgttc aacccccagt tcacttaccc ttaaggctga
      601 taaaattcgg actttttgaa atttctcaaa aatcgctttc acactcactg aatctggatt
      661 tttctcccgt ttttgaaccg cttgtaaata atcacgataa agttcaaccg ctttatccac
      721 caccatttgc acactttttt caatccagct tgatttatcc gttgtctctt tcgtttccgg
      781 ataacagaaa ttttctaact tatcactgtt tttatatttg tcgaaaatct cccacgaaag
      841 gttaattttt tgatcattta ctgcatttgc aagctctcca atccaggctt tttcgccaaa
      901 tcgatagcta tgttttaagt gagataaaca atcaccaatc ggcaacgcat taccggcttc
      961 aatttggtag tcggtaacgg cttttaagta atcgcaatgg gattggctat aaccattatc
     1021 aataaaagag ccaagttccc ccataattga accagcttcc acagaagcaa gctgatcttt
     1081 atctcccagc attatcaagc gagagtttgg tttgagcgct tgaacaactt tctccatcat
     1141 tgataaatca atcattgaag cctcatctaa tacgaccaaa tcatagtgcc acggattttt
     1201 ggtatgatat ttggttttct cagttaatgg tctcgcacca agcaagcgat gaatagtcac
     1261 tgcttcagtt ggaatagagc gttttaactc ctcagataac cccttttctt ccgccaactt
     1321 gctttccagc gactctttca ttcttgctgc tgcttttccg gttggtgcag ccagagcgat
     1381 ttgcaaatat ggtttctgta gtgcttgctg ttttaattgc agcccgagta ataattttac
     1441 taccgtagtt gtttttccgg ttcccggccc acctgaaatt aagctaaact gcttttctaa
     1501 tgctgttgca acggcaatct tttgccagtc gatagtttga gctttcccag tgaatagttg
     1561 gttgagaatg ctttggttta attcggtatt tgcaaatttt tccgaaaaat caaccgcttg
     1621 ttgtaaataa ccggcaatgc gatgctccgc ttgccagtag cgataaaaat agagcaagct
     1681 gttttggaat aacatcggtt taattgtttc gggagaatag ctaaaagcga tatgattttt
     1741 cagcacactc tgccattcaa gcggtggaat ttgctcaatt ttttgcaaaa tttgttcgag
     1801 caaatgataa gtttgtggct tgctatttaa ttcaaaaaga gaagaaagac tgagattttc
     1861 caaacgtaat gccgtatgcc caagtcccac ttggtaagaa accaacgcag cggctaacac
     1921 agctaaatct tgctccaaag gcgaataccc atagggtttc tgcttattat caataaaacg
     1981 ggcaaattga taatttaagt cagaaatcgc cttttcttgt ttaagttcca ataataaatt
     2041 cagcataatc aaaccttaaa tc
//
LOCUS       DANLRW010000193         2033 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.194, whole genome shotgun sequence.
ACCESSION   DANLRW010000193 DANLRW010000000
VERSION     DANLRW010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.194"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(132..350)
                     /gene="ilvM"
                     /locus_tag="PXA71_002513"
     CDS             complement(132..350)
                     /gene="ilvM"
                     /locus_tag="PXA71_002513"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HDL5106567.1"
                     /translation="MEEYQLTLKANKRPETLERILRVIRHRGFEVKCLNVESTDSAFN
                     LNFTLASKRPLSLLSHQLEKLFDIIEIN"
     gene            complement(360..2012)
                     /locus_tag="PXA71_002514"
     CDS             complement(360..2012)
                     /locus_tag="PXA71_002514"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014992040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HDL5106568.1"
                     /translation="MNGARFITESLKAHGVTTLFGYPGGAIMPTYDAIYDSGLDHLLC
                     RNEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLGDAALDSIPVVAITGQVASH
                     LIGTDAFQEADVLGLSLACTKHSFIVQNIEELPEILALAFQIAQSGRPGPVLVDIPRD
                     VQLAQTSALPIVYPKEPADAQDPNKLVVAKQLLATAKRPVLYVGGGVSMADGVQAVRN
                     FVKIANIPSVSTLKGLGTIDPTDPLYMGMIGMHGTKAANYAVQECDLLIACGARFDDR
                     VTGKLDTFAPHAKVIHIDIDNAEINKLRQAQVALKGNLIEAVNYLAQPLDIEPWREDV
                     RNLKQQFDFQYQENSGDGNIDAVALLHTLSQRKAKNSIVTTDVGQHQMWSAQHLTYHD
                     PKNYITSAGFGSMGFGLPAAIGAIKARAEDQVILITGDGSIMMNIQELGTLKRADLAV
                     KILLLDNQRLGMVRQWQSLFFHGRHSQTILDDNPDFVLLAKAFDIDGERIEKASEVSD
                     AIDRMFNAKGAYLLHVCIPQEDNVWPLVPPGACNADMLDDEV"
BASE COUNT          585 a          444 c          428 g          576 t
ORIGIN      
        1 aaataaagag caataagtga aaaaaaagag ttgaaatttg aagaaatgaa taaaatcaaa
       61 aggatagcga atgataaatt ttaagcataa aaaagccgtg tattttttta cacggcgaat
      121 gaaaagtctg attaattgat ttcaatgata tcaaacagtt tttctaattg atggcttaaa
      181 agagagagtg gacgtttact tgctaatgta aaatttaggt taaaggcgct gtctgttgat
      241 tctacattta agcatttcac ctcaaaacca cggtgacgta taacccgtaa aatacgctct
      301 aaggtttcag ggcgtttgtt agctttaagc gttaattgat attcttccat cttattctcc
      361 tatacctcat cgtctaacat atcggcatta cacgcccccg gcggtaccag tggccaaacg
      421 ttatcttcct gtggaataca aacgtgaagt aagtaagccc ctttggcatt gaacattctg
      481 tctattgcat ctgacacttc gctcgctttc tcaattcgct caccgtcaat atcaaaggct
      541 ttcgccaaca acacaaaatc agggttatca tctaaaatgg tttggctgtg tcgcccgtgg
      601 aagaacagcg attgccattg gcgaaccata cctaaacgtt ggttatccag taataggatt
      661 ttgaccgcta aatcagctct tttaagcgtg ccgagttctt gaatattcat cataatcgag
      721 ccatcaccgg taattaaaat aacctgatct tccgctcgag ctttgattgc cccaatcgcc
      781 gcaggcaagc caaaacccat agagccaaaa ccggcagagg tgatatagtt tttcggatcg
      841 tgataagtta aatgttgtgc cgaccacatt tgatgctgcc ctacatcggt agtgacgatg
      901 ctgtttttgg ctttccgctg tgaaagcgtg tgtaataacg ccacggcatc aatattgcca
      961 tcaccactat tttcttgata ttgaaagtca aattgctgct ttaaattacg cacatcttca
     1021 cgccatggtt caatatctaa cggttgagcc aagtaattca cggcttcaat caaattccct
     1081 tttaaggcaa cttgtgcttg acggagcttg ttgatttccg cattgtcgat atcaatgtga
     1141 atcactttag cgtgaggggc aaaagtgtct aatttgccgg taacacggtc atcaaagcgg
     1201 gcaccacagg caatgagtaa atcacactct tgtaccgcgt aatttgctgc ttttgtgccg
     1261 tgcataccga tcattcccat atagagcgga tcggttggat cgatagtgcc taaccctttt
     1321 aaggtagaaa cagacggaat atttgcaatt tttacaaaat ttctgaccgc ttgtacacca
     1381 tcagccatac taacgccacc gccgacataa agtaccgggc gtttggcggt ggctaataat
     1441 tgtttggcaa ccactaattt gttgggatct tgtgcatcgg caggttcttt aggataaacg
     1501 ataggcagag ccgaagtttg agctagttgc acatcacgtg gaatatcgac cagcaccgga
     1561 ccaggtctgc cactttgtgc aatttggaat gcgagggcta aaatttcagg gagctcctca
     1621 atattctgaa caataaaact gtgtttagtg caagcgagtg acaaacctag tacatcagct
     1681 tcttggaagg catcagtgcc gattaaatgg ctggcaactt gtccggtaat tgctaccaca
     1741 ggaatagaat caagtgcggc atcgcctaaa ccggtgatta aattagttgc cccagggccg
     1801 gaggtcgcaa tacaaacccc tactttacct gttgcacggg cataaccgat agctgccatt
     1861 gcagcacctt gttcattgcg gcaaagtaaa tgatctaagc ctgaatcata aattgcatca
     1921 taggtaggca taatagcccc gcccggatag ccaaaaagtg tcgttacccc gtgagctttt
     1981 aaactctcgg tgataaatct tgctccattc atggatgttg tgtccttaat att
//
LOCUS       DANLRW010000194         2018 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.195, whole genome shotgun sequence.
ACCESSION   DANLRW010000194 DANLRW010000000
VERSION     DANLRW010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 2018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2018
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.195"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            183..824
                     /gene="sodA"
                     /locus_tag="PXA71_002515"
     CDS             183..824
                     /gene="sodA"
                     /locus_tag="PXA71_002515"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005708524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HDL5106569.1"
                     /translation="MAYTLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALE
                     AHPELLEKCPGALIKDLSQVPAEKRIAVRNNVGGHVNHTLFWKGLKTGTTLQGALKEA
                     IERDFGSVEAFQSEFEKAATTRVGSGWAWLVLEEGKLAVVSTANQDNPLMGKEVAGVS
                     GYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEKVATCGCAK"
     gene            complement(887..2011)
                     /gene="alr"
                     /locus_tag="PXA71_002516"
     CDS             complement(887..2011)
                     /gene="alr"
                     /locus_tag="PXA71_002516"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011848339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDL5106570.1"
                     /translation="MKPATATIDSQALRHNIRLIKSFAPQQKLLAMIKANAYGQGLLP
                     AAGTLADMVDGFGVARLREALEIQETGYTGKIVLVEGFFDREELLKTLSRKFDTVIHN
                     LEQLELLEQVAKEWQAEQQKGFWTRKAKIYFPINIWLKIDTGMHRLGIHPEQVDHFVE
                     RLKNCALVNSISFVSHFSRADELDCGYTEKQIAVFEQATQKYQDHDRSISASSGILYW
                     KQAHYDWVRPGIIMHGISPHYTPITDLGFKPVMTLSSSLIAVRTHKAGEPVGYGGAWV
                     SPKDTKLGVTAMGYGDGYPRNAPEGTPVLINGRIVPIVGRVSMDMLTVDLGAESQDKV
                     GDKAIFWGEQLLIEDVAKHIGVISYELITKLTPRVIFEYK"
BASE COUNT          586 a          425 c          429 g          578 t
ORIGIN      
        1 tttctttgtc tttctatata aaacaattaa aagcaagaat ttgattagga acctttctaa
       61 attagatagt gaaataattt tgttctagat caaaaaaatg tgcatttttt gtgtgtttct
      121 tgataaaatg tactcggagt ttaactctga ttaacctatt tactatttga gaggaattaa
      181 ctatggcata tacattacca gaattaggct acgcttatga tgcgttagag ccacatttcg
      241 atgctaaaac aatggaaatc caccattcta aacatcacca agcttacatc aacaatgcaa
      301 atgcagcatt agaagctcac cctgaattat tagaaaaatg tccgggtgca ttaatcaaag
      361 atttgagcca agtgcctgca gaaaaacgta ttgcagtgcg taacaacgta ggtggtcatg
      421 taaaccacac tttattctgg aaaggtttaa aaacaggcac taccttacaa ggtgcattaa
      481 aagaagcgat tgagcgtgat ttcggttcag ttgaagcttt ccaatcagaa tttgaaaaag
      541 cagcgactac tcgtgttggt tcaggctggg cgtggttagt attagaagag ggtaaattag
      601 ccgttgtttc aaccgctaac caggacaacc cactaatggg taaagaagtg gcaggcgttt
      661 caggctatcc gattttagtc ttagacgttt gggaacacgc ttactactta aactaccaaa
      721 accgccgtcc ggatttcatt aaagcattct ggaacgttgt aaactgggac gaagccgctc
      781 gccgttttga agaaaaagta gcaacctgcg gttgtgcgaa ataatatttt cgatcttgaa
      841 taagatacaa gcggtaaaat ttgttgaaaa ttttaccgct tgttgtctat ttatattcaa
      901 aaatcacacg aggagtgagt ttagtaatca gctcatagct aatcacgcca atgtgtttcg
      961 ccacatcttc aattaatagt tgctctcccc aaaaaatggc tttatcgccc actttatctt
     1021 ggctctctgc acctaaatcg accgtcagca tatccatcga aactcgaccg acaatcggca
     1081 ctattctacc gttaatcaac acaggggtac cttcaggagc attgcgaggg tagccatcgc
     1141 cgtagcccat tgcagtcacg ccgagtttgg tatctttagg gcttacccaa gcaccaccat
     1201 agcctacagg ctcgccggct ttatgggtac gcacagcgat cagggaagag gagagcgtca
     1261 ttaccggctt aaaacctaaa tcggtaatcg gcgtatagtg gggagaaatg ccgtgcataa
     1321 taatacccgg gcgaacccaa tcataatgag cctgtttcca ataaagaata ccgcttgagg
     1381 cggaaatact gcggtcgtga tcctgatatt tttgcgtagc ttgctcaaac accgcaattt
     1441 gtttttcggt atagccacaa tcgagttcat cggcacggct aaaatgactc acaaagctga
     1501 ttgaattgac caaggcacaa tttttcaaac gttcaacaaa gtgatcgact tgctccgggt
     1561 gaatgcctaa gcggtgcatt ccggtgtcga tttttagcca aatgttaatc gggaagtaga
     1621 ttttcgcttt acgagtccaa aagccttttt gttgctctgc ctgccattct tttgctactt
     1681 gctcgagtaa ttccagttgt tcgaggttat gaatgacggt atcaaacttg cgggaaaggg
     1741 ttttgagtag ctcttctcgg tcaaaaaaac cttcaactaa cacaattttg cctgtgtatc
     1801 cggtttcttg aatttctaag gcttcacgca aacgggcaac tccaaagcca tcaaccatat
     1861 ctgctaatgt gccggcagcc ggcaataagc cttgcccgta agcattggct ttgatcatcg
     1921 ccaataattt ttgctgtgga gcgaaagatt tgatcaggcg aatattatgg cggagggctt
     1981 gactatcaat ggttgctgtt gctggtttca tacttatc
//
LOCUS       DANLRW010000195         1971 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.196, whole genome shotgun sequence.
ACCESSION   DANLRW010000195 DANLRW010000000
VERSION     DANLRW010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.196"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..>1971)
                     /locus_tag="PXA71_002517"
     CDS             complement(<1..>1971)
                     /locus_tag="PXA71_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106571.1"
                     /translation="NLILKNIHNQDDFVQWLSTEQGKKLYSRVGYDKGVWEALSVLLP
                     ERFDFEVFEVIDYSKEWSWFEIIVENLFWRQPEKINMQKLHQFFKNSPYFNQATWINI
                     LYQLATEINHPLNIKYLHNKLYSFSLADRDEIWTAFIALESDQCPAIERLLTWCQKSS
                     GQENIEPEALLLGAIAVSWLFTSTDKRSRNGYINALAHLLWNRLEIALALFKEFIEVN
                     DPYVMEGILSAIHGAVAYSENSSGLKALALEIDNQIFNQPETEEIYPNVLVRDYARHI
                     IEYSLQKDEYSSDDIEIIRERITPPYRSSFPQNLPTNEEIDKKYHSDGQRIIIRSMTT
                     EYGRGMCGYGDFGRYTFEAKFRNWESYKFGNLINVDLLSNYACQMIFEQFGYDDKKHL
                     EFDKETRSRYWRRDDTNKIERIGKKYQWLALYEILARVMDNFPTFSNRYADEIGLEYI
                     TNLDNFYLPKTQIKIVPPTKTDVFFQYINQKQCKTKHYFTIQNDELIDDWVKINDFPD
                     VSNLLEVTINDEQWLVLERHDDFRELAKFGQKETYDRQMWLQIRSYLVKESQFSKAKN
                     WLAQQDFMERWMPEGNEHYGMNIHQFFAENTLNEWQEIYRHRENKSPSFKVIPSVDSH
                     TWESTYGNDGISFYAPIPMLYHGMKMKNAIKDG"
BASE COUNT          633 a          361 c          272 g          705 t
ORIGIN      
        1 ccatctttaa tcgcattttt cattttcatt ccgtgataaa gcataggaat tggcgcataa
       61 aatgaaatgc cgtcattgcc ataagtagat tcccaagtgt gagaatcgac actaggtatt
      121 accttaaatg aaggcgattt attttcccta tgtcgataaa tttcttgcca ctcatttaat
      181 gtattttcgg caaaaaattg atgaatattc attccatagt gttcattacc ttctggcatc
      241 catctttcca taaaatcttg ttgtgccaac caattttttg cttttgaaaa ttgagattct
      301 ttaactaaat aacttctaat ttgtaaccac atttgcctat cataagtttc tttttgccca
      361 aattttgcta attcacgaaa atcatcgtgt ctttctagaa caagccactg ttcatcatta
      421 atcgttactt ccaaaagatt actaacatca ggaaaatcat ttatttttac ccaatcatca
      481 attaattcat cattttgaat ggtaaaatag tgttttgttt tacattgttt ttgatttatg
      541 tattgaaaaa atacatctgt tttagttggc ggtacaattt taatttgggt tttgggtaga
      601 taaaagttgt ccaaattagt aatatattca agccctattt catcggcata gcgattagaa
      661 aaagtaggaa aattatccat cacccttgcc aagatttcat acaaagccaa ccattgatat
      721 ttcttgccaa ttcgctcaat tttattagta tcatctcttc gccaatatct tgaacgagtt
      781 tctttatcaa actcaaggtg cttcttgtca tcatagccaa attgctcaaa aatcatttgg
      841 caagcataat tacttaataa atcaacattg atgagattgc cgaatttata actctcccaa
      901 tttcggaatt tggcttcaaa agtatatctg ccaaaatcac catatccaca cataccacga
      961 ccatattcag ttgtcattga acggataatg attctttgtc catcagaatg atatttttta
     1021 tcaatttctt cattggttgg taagttttgg ggaaatgaac ttctataagg tggcgtaatt
     1081 ctttctctga ttatctcaat atcatctgat gaatattcat ctttttgcaa agagtattca
     1141 ataatatggc gagcataatc acgaaccaaa acattgggat aaatttcttc tgtttcaggt
     1201 tgattaaata tttgattatc tatctctaat gcaagtgctt ttaagccaga tgaattttca
     1261 gaataagcaa cagctccgtg aatggcagat aaaatacctt ccataacata agggtcatta
     1321 acctctataa attccttgaa taacgccaat gcaatttcca atctattcca taataaatga
     1381 gccagtgcat taatatagcc atttctactt cgtttatcgg tagaagtaaa tagccaacta
     1441 acagcaattg cacccaataa tagtgcttcg ggttcaatat tttcttgacc acttgatttc
     1501 tgacaccaag ttagtaatcg ttcaattgct gggcattgat cagactccaa agcaataaaa
     1561 gctgtccaaa tctcatctct atctgccaaa gaaaaagaat aaagtttgtt atgtaaatat
     1621 tttatattta atgggtggtt aatttcggta gccagttgat ataaaatatt aatccaagtt
     1681 gcttgattaa aatatggact atttttgaaa aattgatgta gtttttgcat attgattttt
     1741 tcaggctgcc tccaaaagag attttctaca ataatctcaa accaagacca ttcctttgaa
     1801 taatcaatca cttcaaatac ttcaaaatca aatcgttctg gcaacaatac acttaatgct
     1861 tcccatacgc ccttatcata gccaactcta ctatatagct tttttccttg ttcagtgctt
     1921 aaccattgaa caaaatcgtc ttgattatga atatttttta atattaaatt g
//
LOCUS       DANLRW010000196         1946 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.197, whole genome shotgun sequence.
ACCESSION   DANLRW010000196 DANLRW010000000
VERSION     DANLRW010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1946
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.197"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..457)
                     /locus_tag="PXA71_002518"
     CDS             complement(<1..457)
                     /locus_tag="PXA71_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5106572.1"
                     /translation="MPNFSFTHLYKKHTKELPTVTLLSALIGLSQVSYANPLPLGNTT
                     GTNNLAVGEGSFALGTGSQAIGKNAIATGGNISPQEFNVELENFRDLVNQIEELRTQI
                     AEQEKQGSVNQQLQDALKSQIAQYDTILERVREKQAQQAILANSVISMRK"
     gene            complement(651..1880)
                     /locus_tag="PXA71_002519"
     CDS             complement(651..1880)
                     /locus_tag="PXA71_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HDL5106573.1"
                     /translation="MQFREINPSPRLLMCPGPTDADPRVLRAMSAPILGQFDPEFTSL
                     MNETMEMERRLFQTKNEQTYVVNSTSRGGLETVLTAAICPGDKVLIPAFGRFGYLLNE
                     ILARSGADITIIEREWGTVFEPEEIEAELKKGGYKAVAIIHGETSTSMMQPLEEIGKI
                     CKQYDAMLIVDTVATLGGVDIRVDEWGIDACIGGTQKCISAPSGTALITYNKRIEEII
                     AKRKRVEKGIRAESDVDGTLPPIPSNYLDLAQLQDYWSPRRLNHHTETTSAQYGVHEA
                     LRIILQEGLEARFARHILNDKALCAGLEAMGLKIFGDRKHKAPVVTAFHIPEGMSGPA
                     LRSDILNHFGIELATSFGPLDGKVIRIGNMGFSSQKRNVLLTLGALEAVLLSHKVKVP
                     SGDAVAAALAVYKEADK"
BASE COUNT          553 a          374 c          387 g          632 t
ORIGIN      
        1 ctttccgcat tgatataaca ctattggcta atattgcttg ttgtgcttgt ttttcacgta
       61 cacgctctaa aatagtgtca tattgagcaa tctgactctt taaagcatct tgtaattgtt
      121 gattaacaga gccttgtttt tcttgttcag caatttgagt acgtaactct tcaatttgat
      181 taactaaatc acggaagttt tctaactcca cattgaattc ctggggggag atattaccac
      241 cggttgcaat ggcattcttg ccgattgctt gagaacctgt gcctaacgca aaactacctt
      301 cacctacagc aaggttattg gtgccagtgg tgttgcctaa aggaagtgga ttggcataag
      361 agacttggct aagccctatc agagcgctaa gcaaggtaac agtagggagc tcttttgtgt
      421 gttttttata cagatgggtg aaactaaagt ttggcatatc aaaatttcct cattaaaact
      481 tttacttttc attcttaaaa aaatgctccg tgtcataata tttaatttga ttaaatgaaa
      541 taggaaaaga ttaaatttgt gaaaatattt tgagtttctg tggttttact gtggataaat
      601 atccacagta ttaattatta gtgagttgta ttgtaaattt aggaaggtgg ttatttatca
      661 gcctctttat agactgccaa ggcagctgca accgcatcgc ctgaaggcac ttttacttta
      721 tggcttaaaa gtacggcttc taacgcacct aaggttaaaa gtacgttacg tttttggctt
      781 gagaaaccca tattaccgat acggattact tttccatcta aggggccgaa tgaggtggct
      841 aattcaatac cgaagtggtt taaaatatca ctacgcaatg ctgggccact cataccttct
      901 ggaatgtgga atgccgttac aacgggggct ttatgtttgc gatcgccaaa aattttcaaa
      961 cccattgctt ctaaacctgc acataatgct ttgtcgttta aaatatggcg agcaaaacga
     1021 gcttctaagc cttcttgtaa aataatgcgt aacgcttcgt gtacaccata ttgtgcagaa
     1081 gtggtttctg tgtggtgatt taaacggcgt gggctccagt aatcttgtag ctgtgccaag
     1141 tctaagtagt tacttggaat tggcggtaat gtgccatcta catcagactc tgcacgaatg
     1201 cctttttcca cacgtttacg ttttgcaata atctcttcaa tccgtttgtt ataagtgatt
     1261 aaagctgtgc ctgatggggc ggaaatacat ttttgtgtac cgccgataca agcatcaatg
     1321 ccccattcat ccacacgaat atctacaccg cctaaggttg caacggtatc tacaattaac
     1381 attgcatcat attgtttaca gattttgccg atctcttcta acggttgcat catagaggtt
     1441 gaggtttcgc cgtgaataat agcaactgct ttatagccgc cttttttcaa ctctgcttca
     1501 atttcttctg gttcaaatac ggttccccac tctctttcga taatggtaat atctgcaccg
     1561 ctacgagcta aaatttcatt taataaataa ccaaaacgac caaatgcagg aattaacact
     1621 ttatcgcctg ggcaaatcgc tgcggttaga acagtttcta agccaccacg agaggtggag
     1681 ttgactacat aagtttgctc atttttggtt tggaataaac ggcgttccat ttccattgtt
     1741 tcattcatta atgaggtaaa ctcagggtca aattgcccta aaatgggtgc agacattgca
     1801 cgcaaaacac gtgggtcagc atctgttggg ccagggcaca ttaataaacg aggggaggga
     1861 ttaatttctc tgaattgcat aattatttcc tataattgaa tgaattaaaa aaacttatgg
     1921 attctataat aaaaatttgt gattgc
//
LOCUS       DANLRW010000197         1884 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.198, whole genome shotgun sequence.
ACCESSION   DANLRW010000197 DANLRW010000000
VERSION     DANLRW010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1884
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.198"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..1642
                     /locus_tag="PXA71_002520"
     CDS             <1..1642
                     /locus_tag="PXA71_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HDL5106574.1"
                     /translation="DLNADTSQAFLNELDQTLWTAADKLRKNLDAANYKHIVLGFIFL
                     KYISDSFTDFQAKLKTQLTTPESELYLDPALFDEQEFSQILAEELEQRDYYAAENIFW
                     VPEQARWDNIKSLSKLNLGDELPWGDKFKGVSRLIDDAFEAIERENPKLKGVLQRIAG
                     FGVPDEMLTGLIDLFSRTNFTQPMHNGEPVHLQAKDILGHVYEYFLGQFALAEGKKGG
                     QYFTPKSIVTLIVEMLEPYSGRIYDPAMGSGGFFVQADRFIQAHAGNRNAISVYGQES
                     NSTTRKLAVMNMAIRGIPFDFGDKPEDTLLNPLHIDKKMDVVMANPPFNQKEWWNESL
                     ANDPRWAYGTPPQGNANFAWLQHMIYHLSPKGKMALLLANGSMSSQTSGEGDIRKNIV
                     QADLVEAMIALPNQLFTNTQIPACIWIINKAKARKGEVLFINATQIGYLKDRVLRDFT
                     ADDIAKISDTYHNWQKQNGYENIPAFCYCATLDEIAKNDFVLTAGRYVGAVQEENDGV
                     PFAEKMQELTALLNEQFKQGRELEQQIAENLKGLGYGI"
     gene            1632..>1884
                     /locus_tag="PXA71_002521"
     CDS             1632..>1884
                     /locus_tag="PXA71_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5106575.1"
                     /translation="MAFNQYVFSDIVELISEKIKIKDLKKENYISTDNMLPNFGGITL
                     AENLPNSASCNRFAKKDILFSNIRTYFKKVWLAEFSGGCS"
BASE COUNT          573 a          472 c          392 g          447 t
ORIGIN      
        1 tgatctcaac gctgacacaa gtcaagcctt tttaaacgaa ctcgaccaaa ccctctggac
       61 tgccgccgac aaactgcgta aaaacctcga tgccgccaac tacaaacaca tcgttcttgg
      121 ctttatcttc ctaaaataca tctccgacag ctttaccgat ttccaagcca agctaaaaac
      181 ccagcttacc acccccgaaa gcgaactcta tcttgaccct gcactatttg acgaacaaga
      241 atttagccaa attcttgccg aagagttgga acagagagat tactacgccg ctgaaaacat
      301 cttttgggtg ccggagcaag cccgctggga caacatcaaa tcattaagca aactcaatct
      361 tggcgatgaa ttgccttggg gagacaaatt taaaggtgtc agccgcttga ttgatgatgc
      421 ctttgaagcc atcgaacggg aaaaccccaa actcaaaggc gtactccaac gcattgccgg
      481 ctttggcgtg cctgatgaaa tgctcacagg cttaattgac ctgttctcac gcaccaattt
      541 cacccagcct atgcacaatg gcgaacctgt gcatctgcaa gccaaagaca ttttagggca
      601 cgtctatgaa tactttcttg ggcaatttgc ccttgccgaa ggcaaaaaag gcggtcaata
      661 cttcacgcca aaatccatcg ttaccctgat tgttgaaatg ctcgaaccct attcagggcg
      721 gatttacgac ccagctatgg gcagcggcgg cttttttgtg caagctgacc gctttattca
      781 ggctcacgca ggcaaccgca acgccatttc cgtttatggg caagaatcca actccaccac
      841 tcgcaaactg gcggtgatga atatggcgat tcgtggtatt ccctttgact ttggcgacaa
      901 gcccgaagat accctactaa accctttgca catcgacaaa aaaatggatg ttgtgatggc
      961 aaatccgccc tttaaccaaa aagagtggtg gaatgaaagc ctagcaaacg atccacgctg
     1021 ggcatacggc acaccgccgc aaggcaacgc caactttgcg tggttgcaac atatgattta
     1081 ccacctctcc cccaaaggca aaatggcact cctgctcgcc aacggctcaa tgagcagcca
     1141 aacttcaggc gaaggcgaca ttcgcaaaaa catcgtgcaa gctgaccttg tcgaagcgat
     1201 gattgccctg cccaatcagc tattcaccaa cacccaaatc cctgcctgca tttggattat
     1261 caataaagcc aaagccagaa aaggtgaagt gctgtttatc aacgccaccc aaataggcta
     1321 cctgaaggac cgcgtcttgc gtgattttac cgctgatgac atcgccaaaa tcagcgacac
     1381 ctaccacaac tggcaaaaac agaacggcta cgaaaatatc cctgcgtttt gttattgtgc
     1441 cacgctggac gaaatcgcca aaaacgattt tgtgctgacc gcagggcgat atgtcggtgc
     1501 ggtacaagaa gaaaatgacg gcgtgccgtt tgcagaaaaa atgcaggaat tgaccgcttt
     1561 attgaatgaa caatttaaac aagggcggga attggaacag caaatcgcag agaatttaaa
     1621 ggggttggga tatggcattt aatcagtatg tattttcaga tattgttgaa ttaatatccg
     1681 aaaaaataaa aatcaaagac ttaaaaaaag aaaactatat ttcgacagat aatatgctgc
     1741 ctaattttgg tggaataaca cttgctgaaa accttccaaa ttcagcttct tgcaataggt
     1801 ttgccaaaaa agacattttg ttttccaata taagaaccta ctttaaaaaa gtttggcttg
     1861 ctgaattttc aggtggttgt tctc
//
LOCUS       DANLRW010000198         1779 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.199, whole genome shotgun sequence.
ACCESSION   DANLRW010000198 DANLRW010000000
VERSION     DANLRW010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.199"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..493
                     /locus_tag="PXA71_002522"
     CDS             <1..493
                     /locus_tag="PXA71_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5106576.1"
                     /translation="ARPLNTLEVKGLTVVDDSQKPLFSEVNQALYHGLSPIEVVASRV
                     QITRAITTYTKNVTNTDDPSYLDLTTIRTLDYVRKAIQTRQRLRFPRAKNSHRIVAKV
                     RSEILDVLYQLEGEEVIENVEAWKNRLLVVRNQDPTYLDLEIPADVVNGLHVIRNKIT
                     LIL"
     gene            504..878
                     /locus_tag="PXA71_002523"
     CDS             504..878
                     /locus_tag="PXA71_002523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5106577.1"
                     /translation="MSIVYEGSCVLEVDGVEIEITKLDVKTVTGRKLVKTMNSSGRAR
                     GYSQGIAEYTLSVTAVEPQDGSVIDWDNIKNAKLTKYPLDNSEKRTSYLGCFTTDVSE
                     SYTVDGESVRDIQLNALRKVNE"
     gene            878..1246
                     /locus_tag="PXA71_002524"
     CDS             878..1246
                     /locus_tag="PXA71_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106578.1"
                     /translation="MKITLNLGIEYNGKIRRDCTVRLLTMGGQCTAQEMIADLGFEEN
                     SEALSKREQTLVDMAYLSQQVTFDGIYQGNVTAQFLFDNLATEDYWQLIEATLTLRKK
                     RLENGVSQSESESPANPDLA"
     gene            1276..1464
                     /locus_tag="PXA71_002525"
     CDS             1276..1464
                     /locus_tag="PXA71_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106579.1"
                     /translation="MILLSKFAITAEQVWQMPLLEVFAWIESYLESEGVKTPHSPMGA
                     NSEVKRESYVFTRCGKIE"
     gene            1517..>1779
                     /locus_tag="PXA71_002526"
     CDS             1517..>1779
                     /locus_tag="PXA71_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106580.1"
                     /translation="MAKNMKVQLELTAKDTASPVLNQAAKTAEKAFKNTERAAQKSGN
                     AQTQAAQKAANATESSNRKIEQSYRNARRVAADVSRARETLGVR"
BASE COUNT          540 a          353 c          447 g          439 t
ORIGIN      
        1 ggctcgcccg ttaaataccc ttgaagttaa aggcttaacg gtcgtagatg actcgcagaa
       61 accgttattt agcgaagtaa accaagcgtt atatcacggt ttaagcccga ttgaggtggt
      121 ggcaagccgt gtgcagatta cccgtgcgat tactacatac accaaaaacg tgacgaatac
      181 tgatgaccca agctatttgg atttaaccac cattcgtacg cttgactatg tgcgtaaggc
      241 aatccaaacc cgtcagcgtt tgcgtttccc tcgtgcgaaa aactcccacc gtattgtggc
      301 aaaagtacgc tcggagattt tagatgtgct ttatcagctt gagggcgaag aggtaatcga
      361 aaatgtggaa gcgtggaaaa atcgcttatt agtggtgcgt aatcaagacc cgacttactt
      421 ggatttagaa atccctgcgg atgtggttaa tggcttgcac gttattcgta acaaaattac
      481 gttaatttta tagggggtgc tagatgtcaa ttgtttatga aggctcttgc gtgcttgagg
      541 tagatggcgt tgagattgaa attaccaaac ttgatgtaaa aaccgtaacc ggtcgcaagc
      601 tggttaaaac gatgaacagt tccggacgtg caagaggtta ttcgcaaggc attgcggaat
      661 ataccctctc ggtgactgca gttgagcctc aagacggttc ggtaattgat tgggataaca
      721 ttaaaaatgc gaagctcact aaatacccgt tagacaatag cgaaaaacgc acctcttatt
      781 taggctgttt tactaccgat gtgagcgagt cttacaccgt tgatggtgag tcggtgcgtg
      841 atattcaact caacgcattg cgtaaggtga atgaataatg aaaatcactt taaatcttgg
      901 cattgaatat aacgggaaaa ttcgccgtga ttgtacggtg cgattgctga cgatgggcgg
      961 tcaatgcacg gctcaagaaa tgattgcgga tttagggttt gaggaaaact cggaagccct
     1021 atcaaagcgt gaacaaacct tggtcgatat ggcttacctt tcgcagcaag ttacctttga
     1081 tggtatttat caaggtaatg tgacggctca atttttattt gacaatttag ctaccgaaga
     1141 ctactggcag ttgattgagg caacgctcac actccgaaaa aagcggttag aaaatggggt
     1201 gagccaaagc gagagcgaaa gcccggcaaa tcccgatttg gcgtagcaga agcctttaag
     1261 cagtaccgac aagcggtgat tttactctca aaatttgcaa ttaccgccga gcaggtatgg
     1321 caaatgccgt tgcttgaggt atttgcgtgg attgagagct acttggagag tgagggcgta
     1381 aaaacaccgc atagcccaat gggtgcgaat agcgaagtga aacgcgaaag ctatgtcttt
     1441 actcggtgtg gcaaaattga ataggggcga aagccccttt tttgtacttt aaaatgagtt
     1501 taaagagact ttaaaaatgg caaaaaatat gaaagtgcaa ctggaattga cggcaaaaga
     1561 tactgcctcc ccagttttaa accaagccgc taaaaccgcc gaaaaagcct ttaaaaatac
     1621 agagcgagcg gcacaaaaaa gtggcaatgc tcaaacgcaa gcagcacaga aagcagcgaa
     1681 tgctacagaa agctcaaatc ggaaaataga acagagttac cgtaatgccc gccgagtggc
     1741 tgccgatgtg agccgagccc gtgaaacatt aggtgttcg
//
LOCUS       DANLRW010000199         1771 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.200, whole genome shotgun sequence.
ACCESSION   DANLRW010000199 DANLRW010000000
VERSION     DANLRW010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.200"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(153..1646)
                     /gene="mltF"
                     /locus_tag="PXA71_002527"
     CDS             complement(153..1646)
                     /gene="mltF"
                     /locus_tag="PXA71_002527"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HDL5106581.1"
                     /translation="MKGLIARLFIAVALLLWAWDMIFPWQKIIHSEANHYTQIQQSKT
                     LKVGMINHPLSYFVGPEGKSGIEYDLATAFAQYLKVNLDIKTYDSSEKLFEALRNNDV
                     DIAAAGLLYHSELNDEFQIGPSYYSASWQLVYKKGSARPYRLSDLRENVIIPAGSAVI
                     PILNQLKVDNPELKWQISDKFTQEELLLKVAQGEISHTIAMSVDISAAQHINPNLAVG
                     FDLTDENPVLWYLANSSYSELQSVLLDFMSYSMETGLISRIEEKYFNHLAKFDYVDIQ
                     SYLNAIKTILPKYEPLFRAHKGELEWQMLAAIAYQESHWDPNATSPTGVRGIMMLTKD
                     TADRMKISDRTNPAQSIKAGSEYLHMLMRQMPETIPQADRIWYSLAAYNMGLGHLLDL
                     RRLTKQLGGDPDNWLDVKKNLPLLAEKRYYANLKYGYARGYEALQYVENIRRYYGSII
                     NYQRVEEQKMQEQENLPDGQIKQENSSYEKIEEKEIPTDKEITPASN"
BASE COUNT          566 a          348 c          265 g          592 t
ORIGIN      
        1 ctatttagta tcaaagccta aaacttatat cataatctaa taaccccttt aaagtcataa
       61 ctaaaaaggg aaaataaatt cagatggcct gttgcatctg cataaatgcc tttctacgtg
      121 cagaaattaa tctttttcta tctttaattt gcttaatttg acgcaggcgt aatttccttg
      181 tcagtaggga tttctttttc ttcaattttc tcataagaag aattctcctg ttttatttga
      241 ccatctggta aattttcttg ttcttgcatc ttttgctctt caactcgttg ataattaata
      301 atactaccat aataacgccg tatattttca acatactgta atgcttcata tcctcgagca
      361 tagccgtatt ttagattagc ataataacgt ttttccgcaa gcaatggcag attcttttta
      421 acatcaagcc aattatccgg atcaccacca agttgttttg ttaatcgacg aagatccaac
      481 aagtgcccca atcccatatt atacgctgct aggctatacc aaattctatc tgcttgagga
      541 atagtttccg gcatttgtct cattagcata tgtaaatatt cagatcccgc tttgatactt
      601 tgtgcagggt tagtcctatc agaaattttc attctatctg ccgtatcttt tgtcagcatc
      661 ataattcccc tcactccggt tggagaagtt gcattaggat cccaatgaga ctcctgatag
      721 gcgatagccg ccagcatttg ccattctaat tcacctttat gtgcccgaaa aaggggttca
      781 tatttaggta aaatagtttt aattgcattc aaatagctct gaatatcaac ataatcaaac
      841 ttagctaaat gattaaaata tttctcttct attcttgata tcagcccagt ttccatagaa
      901 taagacataa aatccagcag cacagattgc agttcactat aagaactatt tgctaaatac
      961 cataacactg ggttttcatc agttaaatca aaccctacgg ctaaattagg attaatatgc
     1021 tgtgcagcag aaatatcaac cgacattgca attgtatgtg aaatttcacc ttgtgcgact
     1081 tttaacaata gctcttcttg tgtaaattta tccgagatct gccattttag ttccggatta
     1141 tccaccttaa gctgatttaa tattggaatt accgcagaac cggctggaat aatcacattt
     1201 tcccgcaaat cggaaagtcg atatggtcta gcacttccct ttttataaac aagctgccaa
     1261 gaagccgaat aataggaagg acctatctga aattcatcgt ttaattcaga atggtaaagc
     1321 agcccagcgg cagcaatatc aacatcatta tttcttaagg cctcaaacaa tttctcgcta
     1381 ctatcataag ttttaatatc aagattgacc tttaaatatt gagcaaaggc tgttgctaaa
     1441 tcatattcaa tgccactttt tccttcagga ccaacaaagt aagaaagtgg atggttgatc
     1501 attccaacct ttaacgtttt gctttgctga atttgtgtat aatgatttgc ttctgaatga
     1561 atgatttttt gccaaggaaa aatcatatcc caagcccaca gtaacaatgc tacggcaata
     1621 aaaaggcgag caattaatcc tttcaattta aaatcctcat tatttcaagc taagcattaa
     1681 gcctatctga aattacaaat taacggaata atactttata gtttaattat ttattaaaaa
     1741 aataaaatgg gaatataatg gatataatat a
//
LOCUS       DANLRW010000200         1751 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.201, whole genome shotgun sequence.
ACCESSION   DANLRW010000200 DANLRW010000000
VERSION     DANLRW010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.201"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            115..1437
                     /gene="pepP"
                     /locus_tag="PXA71_002528"
     CDS             115..1437
                     /gene="pepP"
                     /locus_tag="PXA71_002528"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HDL5106582.1"
                     /translation="MDLAYLAKMPQEEFTARRERVLEQMQDNSALLVFTESEKRRNSD
                     SEYLFRPDSYFWYLTGLAEPKSAVLLVKSEGKTESIIFVRKKDPLMETWNGRRLGIEE
                     APKTLQLNAAFDIDDIETVLAKKLENLTACYCALGIQEWGDNILFATFEKMKVNRQKV
                     PTTLIDWQPMLSEMRLIKSEFEIALIQQACHISSMAHIRAMKQARPNRYEWEIEGEIQ
                     HEFSRFGARFPAYNSIVAGGENACILHYNENDQVLKGGDLLLIDAGAEFAYYAGDITR
                     TFPINGKFSEPQKELYELTLTMQKEAINLLVPNSSIKAANDKAVQILTQGLVRLGILN
                     GDVESLIEQKAYRQFYMHGLGHWLGLDVHDVGDYGTERDRPLQIGMVLTVEPGIYIPK
                     DADVPEQYKGIGIRIEDNLLITEYGNKNLSSGCPKEIADVEQLMQSLN"
     gene            1553..1738
                     /locus_tag="PXA71_002529"
     CDS             1553..1738
                     /locus_tag="PXA71_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1508 domain-containing protein"
                     /protein_id="HDL5106583.1"
                     /translation="MYFEIYKDAKEEFRWRLKAGNHEVIATNQAYTTKQGCQKGIEAV
                     KKVTPETEVKDLTKAEA"
BASE COUNT          562 a          295 c          406 g          488 t
ORIGIN      
        1 tgcaatcaag atctcaaata taatctttca tctgttttgg ttaggctgaa tttatgctgc
       61 gtttgtgcta aaataaggca ggtttcgata tagatataat aaaaaggaga aataatggat
      121 ctcgcttatt tggctaaaat gccacaagaa gaatttaccg cacgccgtga gcgtgtgctt
      181 gagcaaatgc aggataattc tgcgttattg gtttttaccg aatcggaaaa acgccgtaat
      241 agtgactctg aatacttgtt tagacctgat agttactttt ggtatttaac cggtttggca
      301 gaacctaaat cagccgtatt gctggtaaaa agcgaaggta aaacggaaag tattattttt
      361 gtgcgtaaaa aagacccttt aatggaaacc tggaatggca gacgtttagg gattgaggaa
      421 gctccaaaaa cgttacagct taacgcagct tttgatattg atgacattga aaccgttctt
      481 gcaaaaaaat tagaaaatct gaccgcttgt tattgtgcgt tagggataca agagtggggc
      541 gataatattt tgtttgcaac atttgaaaaa atgaaagtca atcggcaaaa agtgccgaca
      601 accttgattg attggcagcc aatgttatcg gaaatgcggt tgattaaatc agaatttgaa
      661 attgccttaa ttcagcaggc gtgtcatatt tcttcaatgg cacatattcg agcgatgaaa
      721 caagctcgcc cgaatcgtta tgagtgggaa attgaggggg aaattcaaca cgaatttagc
      781 cgttttggag caaggtttcc ggcatataat tcaatcgttg ccggcggtga gaatgcctgt
      841 attcttcact acaatgaaaa tgatcaggtg cttaaaggcg gcgatttatt actgattgat
      901 gcaggggcgg aatttgcgta ttacgccggc gatattaccc gaaccttccc tattaatggg
      961 aaattctccg aaccgcaaaa agagctgtac gaattaacct taactatgca aaaagaggcg
     1021 attaatcttc ttgtgccaaa cagctcgatt aaagcggcaa acgataaggc tgtacagatt
     1081 ctcacgcagg gcttggttcg cttaggaatt ttaaacggtg atgtggaaag cctgattgag
     1141 caaaaagcct atcgccaatt ttatatgcac ggattagggc attggctagg gctagatgtt
     1201 cacgatgtgg gggattacgg cacggagcgg gatcgtcctt tgcagattgg tatggtgtta
     1261 actgttgaac ccggtatcta tattcctaaa gatgcggatg taccggagca atataaaggt
     1321 attgggattc ggattgaaga taatttgctg attaccgaat acggcaacaa aaacttaagc
     1381 agcggttgcc ctaaagaaat tgcggatgtt gagcagttga tgcaatcgtt aaattaattc
     1441 gcaaattttt gtaaaaaaat gaccgcttgc tttgatattt tggggaattt agcttaagct
     1501 aacccgacac aaacacagtg tttgggcaat cacaacacga aggagtgttt atatgtattt
     1561 tgaaatttac aaagatgcaa aagaagaatt tcgttggcgt ttaaaagcgg gtaaccacga
     1621 agttattgca accaaccaag cttatacgac taagcaaggt tgtcaaaaag gcattgaagc
     1681 agttaaaaaa gttacacctg aaacagaagt aaaagattta accaaagctg aagcataatc
     1741 tataaagccc t
//
LOCUS       DANLRW010000201         1739 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.202, whole genome shotgun sequence.
ACCESSION   DANLRW010000201 DANLRW010000000
VERSION     DANLRW010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.202"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..1521
                     /locus_tag="PXA71_002530"
     CDS             <1..1521
                     /locus_tag="PXA71_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HDL5106584.1"
                     /translation="IQGNLVTAIPNFLEKVNNDFAISARNRDLYSHYLPYQGIDDWEN
                     SNFNFRTLNGVYYDDNLTSTELLRKFMIQRDYNTLYALSSARTGNADSLAKNYHLVVA
                     KMSYENLKKELSKKPDSTFNKLKKLYETNGEFLNEYILDNFRGNPLELLTVPALKESL
                     ENQESFPSRLYQKFNIFNQAIAQTTSNITKEEIDDLEKTVENFNNFKNSIDYDSDAWI
                     FNKEEYRTYMNDNVIPFMEKVEEFTETLKTLSRDDLSAEERTTKTIDSVKLRIYLNEQ
                     ARNRKNYINGFVPTDWIPEITDQMTKSKNLWLKYEEEAKTTLKPYQEETISRVIQDEI
                     NKKMAEIGTTTLEIGGKEHELEDLENQINALALTDEEKLAEDVENDLISKLDEAKAAL
                     AKNQQTLKEKRDELLGLNNKLDSSPLVKKGKNALAEGTNAFASGENAIAFGTDSQATG
                     NNAIALGANSKANAESAIAIGKGAQALKEKALALGENAIANRASAIAIGDNHSSKL"
     gene            complement(1570..>1739)
                     /locus_tag="PXA71_002531"
     CDS             complement(1570..>1739)
                     /locus_tag="PXA71_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL5106585.1"
                     /translation="YTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRI
                     WVEKEFKLKLI"
BASE COUNT          658 a          299 c          299 g          483 t
ORIGIN      
        1 attcaaggta acttagtaac agccattcct aacttcctgg agaaagttaa taatgatttt
       61 gctataagtg ctagaaatag agacttatat agtcactacc ttccttatca gggtattgat
      121 gattgggaga attctaattt taactttcga acactaaatg gagtttatta tgatgataat
      181 ctaacttcaa cagaactcct gcgaaaattt atgattcaaa gagattataa cactctttat
      241 gctctaagtt ctgctcgcac aggaaatgct gatagtctgg ctaaaaatta ccatcttgta
      301 gttgcgaaaa tgtcctatga aaacctgaaa aaagaattat ccaagaaacc cgactctaca
      361 tttaataaac tgaaaaagct gtatgaaacc aatggtgaat tcttaaatga atatatttta
      421 gacaatttcc gaggaaatcc acttgaatta ttaacagtac ctgcgcttaa agaaagttta
      481 gaaaaccaag agtcattccc tagcaggctg tatcagaaat ttaatatttt caaccaggct
      541 attgcacaga ccacatcaaa cattactaaa gaagaaattg atgatttaga aaaaactgta
      601 gaaaatttca ataacttcaa aaattcaatt gattatgata gcgatgcgtg gatctttaat
      661 aaagaagaat atcgcactta tatgaatgat aatgtaattc cttttatgga gaaggtagag
      721 gaatttactg aaacattaaa aactttatct agagatgact taagtgcaga ggaacgtaca
      781 accaaaacaa ttgactccgt taaattaaga atatatctca atgaacaagc acgaaatcgt
      841 aaaaattata ttaatggatt tgtacctacc gattggattc ctgaaattac agatcaaatg
      901 acaaaatcca aaaatctatg gttaaaatat gaagaggaag ccaaaacaac attaaaacca
      961 taccaagaag aaacaatatc tagggttata caagatgaaa ttaataaaaa aatggctgaa
     1021 ataggtacta caacactaga gattggtggt aaagaacacg agctcgagga tcttgaaaac
     1081 caaattaatg ctttagcttt aactgatgaa gaaaaacttg cggaagatgt ggaaaatgat
     1141 ttaatctcaa agcttgatga ggctaaagca gccttagcaa aaaaccagca aacgctcaaa
     1201 gaaaagcgtg atgaattact agggctaaat aacaaattag atagctcacc acttgttaaa
     1261 aaaggtaaaa atgcacttgc agaaggcacg aatgcctttg cttctggtga aaatgccatc
     1321 gcattcggca cggattcaca agctacaggt aataacgcta tcgcactagg tgcaaattca
     1381 aaagcaaacg cagaaagtgc gattgcaatt ggtaaaggtg cacaagcatt aaaagaaaaa
     1441 gcccttgctt taggcgaaaa tgccattgcc aacagagcat ctgctattgc gattggtgat
     1501 aaccattcat ctaaattgta gaagatcaaa cctaatctga cagtcccccg ttttaaatta
     1561 ccgtgtctgt cagattaatt tgagcttaaa ttctttttcc acccaaatcc gttttccatc
     1621 aagtaaggtt gccatcggtg ttctgccaca gcacattttt ccttgatgtg ttcgatggtg
     1681 attataatac attaaccact catctaaatc cgcttgtaat gtcgttaaat ccgtataaa
//
LOCUS       DANLRW010000202         1616 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.203, whole genome shotgun sequence.
ACCESSION   DANLRW010000202 DANLRW010000000
VERSION     DANLRW010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.203"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            60..1376
                     /gene="argA"
                     /locus_tag="PXA71_002532"
     CDS             60..1376
                     /gene="argA"
                     /locus_tag="PXA71_002532"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HDL5106586.1"
                     /translation="MQNTELALAQWFRQSTPYVNMHRGKTFVIMLDGDVIESPNFVNI
                     INDISLLHSLNIKLVIVFGARPQINQLLKQNHIEPEYYHNIRVTNPQSLEYVKQAVGK
                     VHYDFFARLSLRLPHSEVINVVSGNMILAQPIGVVDGVDYTLSGKIRRINIESIKQQL
                     AQNSIVLLGPIAPSVTGEMFNLPFEDIATQVAIKLRADKLIGFCEEQGILDENGKPIP
                     DYLPQDGETLLQQLIERGEYHTPKARFLQAAITVCREGVKRSHLLSYKEDGSLLQELF
                     SRDGIGTQFSMESSEQVRIANSSDIPGLLDLIRPLEQQGILVKRSREQLEMEITNYTI
                     IERDGVVIACAALNPYPEEKMAEMACVAVHPDYRDSSRGDILLENIQKRAVQLGMEKL
                     FVLTTRTTQWFQERGFRLAGAQDLPRYKRENYNYQRRSKVLILPLW"
BASE COUNT          511 a          303 c          347 g          455 t
ORIGIN      
        1 aaggcttgcg gatttttcta aaaaagataa tatgcgttta tattataaag aggaaatata
       61 tgcaaaacac agaactcgca ttagctcaat ggtttaggca atctacacct tatgttaata
      121 tgcacagagg caaaaccttt gtgattatgc ttgatggcga tgttatcgaa agcccgaatt
      181 ttgtcaatat tatcaatgac atcagtctcc tgcacagcct gaatatcaaa ttagtgattg
      241 tatttggggc aagaccgcaa attaaccaat tgttaaaaca aaatcatatt gagccggagt
      301 attaccacaa tatccgtgtg actaatccac aatcgctaga atatgtgaaa caagcggtag
      361 ggaaagttca ttatgatttc tttgcccgcc tttctttgcg tttaccccat tctgaagtga
      421 ttaatgtagt cagtggtaat atgattttag ctcagccgat tggcgtggtg gatggggtag
      481 attatacact aagcggtaaa atccgtcgta ttaatattga gagcattaag cagcaactgg
      541 cacaaaattc gattgtatta cttggtccga ttgccccgtc tgttaccggt gaaatgttta
      601 atctgccgtt tgaagatatt gccacacagg ttgcaattaa acttcgtgcc gataaattaa
      661 tcggtttttg tgaagagcag gggattttag atgaaaacgg caagccaatt ccagattatc
      721 ttccgcaaga tggcgaaacc ttgttacagc agttaatcga gcgtggcgaa tatcacaccc
      781 cgaaagctcg gtttttgcag gcggcgatca cggtatgccg agagggagtg aaacgctcgc
      841 atttattaag ctataaagaa gatggctcat tgcttcaaga gttattctct cgtgatggta
      901 ttggcacaca gttctcaatg gaaagctcgg aacaggtacg tattgctaat tccagtgata
      961 ttccgggatt attggattta atccgcccac ttgaacagca gggcatttta gtcaaacgct
     1021 ctcgagaaca attagaaatg gaaatcacaa actacaccat tattgagcgt gatggtgtgg
     1081 tgattgcttg tgcggcactt aacccgtatc cggaagaaaa aatggcggaa atggcgtgtg
     1141 tggcggttca ccctgattat cgtgattcct caagagggga tattctactg gaaaatattc
     1201 aaaaacgggc agtgcaactg ggaatggaga aactctttgt gctgactaca agaaccacac
     1261 aatggttcca agagcgagga tttaggctgg caggtgccca agatttacct cgctataaac
     1321 gggaaaatta caattatcaa cgtcgttcta aagtattaat tttaccactt tggtaaaata
     1381 ttcaatgttt ttgaccgctt gttaccaaga gaactataaa aggagaacta tgaaaaaaca
     1441 tcaacccatc aaaggggcta tggcaattat tactgctgta gaagatcaga cttgatctga
     1501 caattcactc taaaaagtga gagtttcccg tttagaatat gagtgtcaaa aatcaatcta
     1561 aacaaaaagg aaactctcat gttttattct aacaaccctc tcattaaaca caagac
//
LOCUS       DANLRW010000203         1616 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.204, whole genome shotgun sequence.
ACCESSION   DANLRW010000203 DANLRW010000000
VERSION     DANLRW010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.204"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..218
                     /locus_tag="PXA71_002533"
     CDS             <1..218
                     /locus_tag="PXA71_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106587.1"
                     /translation="KNLTDESEEQAILAYLTENIMARIEKEQPLEKTLILYSEQLASF
                     EQKSPMALHREKFEAKPTGLAELINNL"
     gene            229..1179
                     /locus_tag="PXA71_002534"
     CDS             229..1179
                     /locus_tag="PXA71_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P2 family phage major capsid protein"
                     /protein_id="HDL5106588.1"
                     /translation="MSLSTFAHALKLDKQGNVILFDDSPEEQAKLISRLKQNRLFKLL
                     NLVQTKHAKGEAIGLFTPIAGTTNTESGEEREPKQALAPAQKYHCEQINIDSYIRYEK
                     IDAYNLENSLEERLNQLLDDNLLRGLLMVGWQGVSRADTSNATNNQLAQDVKKGWLQK
                     IREGKPEAVINGATIGKEQQYKSLNALIKQGLGKISPAYAMGGDMIAICGRDIIADDV
                     IQLEHNDLSENLADLLTLCQQAKGGLKAVSIPYFPSNAILITRLDNLSLYLHLNNIRR
                     KAFDTPQKDSVETFYSLNVDYIVEDFNACCLIENIEVIEE"
     gene            1176..1370
                     /locus_tag="PXA71_002535"
     CDS             1176..1370
                     /locus_tag="PXA71_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106589.1"
                     /translation="MSLESYIQQAEEMELLEKLDFVSDLLELEKVSEIEAYRILTAHG
                     EPKPQPAQEKLIGCVDFLDD"
BASE COUNT          603 a          329 c          307 g          377 t
ORIGIN      
        1 ataaaaacct cacagatgaa agtgaagagc aagctattct ggcatatcta acagaaaata
       61 taatggctag aattgaaaag gaacagccac ttgaaaaaac attaattctt tattctgaac
      121 agttagcaag ttttgaacaa aaatcgccaa tggcattaca ccgtgaaaaa tttgaagcaa
      181 aacctaccgg cttagctgaa ttaattaata acttataaga ggtaaaaaat gagtttatcc
      241 actttcgccc acgcattaaa actagataaa caaggtaacg ttattttatt tgacgatagc
      301 cccgaagaac aggcaaaact aattagccgc ttaaaacaaa atcgcctttt taaattattg
      361 aatttagtgc aaaccaagca cgcaaagggc gaagcgattg ggctattcac accgatagcc
      421 ggcacaacca acaccgaaag cggagaggaa cgagagccaa aacaagccct tgcacccgct
      481 caaaaatacc actgcgaaca aatcaacatt gatagctata ttcgctatga aaaaatcgat
      541 gcttacaacc tcgaaaacag cttagaagaa cgcttaaatc agttacttga tgacaacctt
      601 ctaagagggc ttttaatggt tggctggcaa ggcgtaagcc gtgcagatac atcaaacgcg
      661 acaaacaacc aactcgccca agacgtgaaa aaaggctggc tacaaaaaat cagagagggc
      721 aagcccgaag cggtaattaa tggagcaacc ataggcaaag agcaacaata caaaagccta
      781 aatgctctga ttaagcaggg attaggcaaa attagcccag cgtatgcaat gggcggagat
      841 atgatcgcca tttgtgggcg ggatattatc gctgatgatg taattcagct tgaacacaac
      901 gatttaagcg aaaacctagc cgacttatta accttatgcc aacaagctaa aggcggacta
      961 aaagcggtaa gtattcccta cttcccaagc aatgcgattt taatcactcg attagataac
     1021 ctttcgctat atcttcattt aaacaatatc cgccgtaaag cgtttgatac gccacaaaaa
     1081 gacagcgtag agacatttta ctccctcaat gtggattaca ttgtagaaga ttttaacgcc
     1141 tgttgtttaa ttgaaaatat tgaggttatt gaagaatgag cctagaaagc tatatccaac
     1201 aagcggaaga aatggagctt ttagaaaaac tcgattttgt ttcagacctg ttagaacttg
     1261 agaaagtcag cgaaattgaa gcctatcgca ttttaaccgc ccacggcgaa cctaaacccc
     1321 aaccggcaca agaaaagcta ataggttgcg tagattttct tgatgactaa cccaagcccc
     1381 gaaaggggct ttttgcattt ttgcaacaaa aaacgaccgc ttgcaccctt tgaaattatt
     1441 gctatcatta ataaaaaaca ataaccaaat caaatgagag tacagcaatg acaaactata
     1501 aactaccggc tagaaagtgg tacaccttag agcaggcaac aaaacgcatt aaacaactca
     1561 ctggcgaaga tatagaaata gaagatttat tacattattg gtatttaaga aagcta
//
LOCUS       DANLRW010000204         1570 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.205, whole genome shotgun sequence.
ACCESSION   DANLRW010000204 DANLRW010000000
VERSION     DANLRW010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.205"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            97..>1570
                     /locus_tag="PXA71_002536"
     CDS             97..>1570
                     /locus_tag="PXA71_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HDL5106590.1"
                     /translation="MLSKLQRFTLMIKSTIIKHPLEILFVTYVTILLINNVSDYELIK
                     RFQNLIALFPICFILLYLIRDTKAYWLFAPIPIAIVFFFGQINLTLLEDSRYWATIFC
                     VFLCLISQYWYKNNHYFVAGTTNKLVNIVFATVLSGIIFATLSAITIAIIALFDLNKQ
                     NNFHIFEKFGIFSSFWAFPVLFLTLEQQTTNDSRYLNRISEMLLNWILSPALIIYTAI
                     IYAYVIFIAAKGQMPDGVVANVALPYLAFGLAIQAVQLLLKNAKWQWFYSHFTYLALL
                     PLTLIWYAIYIRFSHYGLTEARIYLVIGTITLSICYTLLLFKQLAQYRLFSAVSIAII
                     LISVFILDPKTVALKDQTKRLDNYLLKHKLLDVNNKISTKAVLKYQESLNENRDEAEY
                     FYSMLHYVARGMPAAQFKEKYGVNSSYDLMSEIRERNTDPRYFEATNSELVRLTKADM
                     ANAREYITFSSQLYRPNSFSHQKIENKLCQKLLSQGYYFEG"
BASE COUNT          498 a          279 c          235 g          558 t
ORIGIN      
        1 ttcacctcta aaaacaaata aagattaaaa ctgtttacct attatttatt cacatatata
       61 ctgtgagata ttcttttcat aggcaggaga tctattatgc taagtaagct acaacgcttt
      121 accttaatga taaaaagcac catcattaag catccactgg aaattttatt cgttacttac
      181 gtcacgattt tacttatcaa taatgtgagc gactacgaat taatcaaacg ctttcaaaat
      241 ctaattgctc tttttcctat ttgctttatt ttgctttacc tgatacgcga taccaaagct
      301 tattggctat tcgctccgat tccgatagca atcgtctttt tctttggtca aattaattta
      361 acattattgg aagattctcg ttattgggct accatatttt gtgtattcct ttgtttgatc
      421 agtcaatatt ggtacaaaaa caaccattat tttgtagccg gaacaactaa taaattagtt
      481 aacattgtct ttgctacagt tttatctggc attatttttg caacattaag cgctattacc
      541 atagccatta ttgctttatt tgatttaaat aaacaaaaca actttcatat ttttgaaaaa
      601 tttggcattt tttctagttt ttgggcattc cctgttttat ttttaactct tgaacaacag
      661 actaccaatg attctagata tctaaaccgc attagtgaaa tgttactaaa ctggattttg
      721 tctccggcat taattatcta tactgcaatt atttatgctt atgtaatttt tattgcggct
      781 aaggggcaaa tgccagatgg ggttgttgca aacgtagcgc ttccctattt agctttcggc
      841 ctagctatac aagcggtgca attattacta aaaaatgcaa aatggcagtg gttttattct
      901 cactttacct atttagcact tttgccgtta acattaattt ggtatgccat ctatattcgt
      961 ttcagccatt atggcttaac tgaagcccgt atttatttag tgattggcac aataacctta
     1021 tctatttgct ataccttatt actatttaaa cagttggcgc aatatcgtct cttttctgca
     1081 gtgtcgatag caattatttt aatttcagtg tttattttag atccgaaaac agttgcgctt
     1141 aaagatcaaa ccaagcggtt ggacaactat ttgctaaaac acaaattatt agatgtaaat
     1201 aacaaaatca gcacaaaagc tgtacttaaa taccaagaat cattaaatga aaaccgagat
     1261 gaagccgaat atttttattc aatgctccac tatgttgcca gaggaatgcc tgctgcacaa
     1321 tttaaagaga aatatggcgt aaattcaagc tacgatttaa tgagtgaaat aagagaaaga
     1381 aatactgacc cacgttattt tgaagctact aattctgagc tggttcgctt aactaaagca
     1441 gatatggcaa atgctcgtga atatattaca tttagtagcc aattatatcg gcctaattca
     1501 ttttcccatc aaaaaataga aaataagcta tgccaaaaac tcctttctca aggttactat
     1561 tttgagggaa
//
LOCUS       DANLRW010000205         1502 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.206, whole genome shotgun sequence.
ACCESSION   DANLRW010000205 DANLRW010000000
VERSION     DANLRW010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.206"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            131..406
                     /locus_tag="PXA71_002537"
     CDS             131..406
                     /locus_tag="PXA71_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106591.1"
                     /translation="MKNNILITYDLNKSGQNYAALIEKIKTLGAWAKVQQSAWYLHTS
                     YSSKEVLEMLSTVTDYNDSLFVAQLSEANWRGLSNEVSKFIQEQWWK"
     gene            complement(409..660)
                     /locus_tag="PXA71_002538"
     CDS             complement(409..660)
                     /locus_tag="PXA71_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106592.1"
                     /translation="MKNKNFEIAKVVILNEQLGSPKDLELKVVENGLSDEDKYHIKQA
                     VLKAVENGCLDPEMLASRCCSAIETINKSGINTGNGSCE"
     gene            complement(1113..1343)
                     /locus_tag="PXA71_002539"
     CDS             complement(1113..1343)
                     /locus_tag="PXA71_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106593.1"
                     /translation="MNAQATLNNHKDYILCGRKEKRTSDFINVFEVFENETTQEFVIE
                     RAMFRNGKLIDWNQSDKMNAEQAQQLWQAYIH"
BASE COUNT          421 a          299 c          259 g          523 t
ORIGIN      
        1 aacacacttg gtgaaatatg ctttggaata agtgcctttc tttatacttg taaggctcaa
       61 gtcccttatt gcctctcaca actctaagga atataatcaa ggctctcaca actcaaataa
      121 ggattaagtt atgaaaaata atattttaat tacttatgat ttaaataaat cagggcaaaa
      181 ttacgcagca ctcattgaaa aaattaaaac tcttggagct tgggctaaag tacagcagtc
      241 agcttggtat cttcatactt catattcctc aaaagaggtt ttagaaatgc taagcaccgt
      301 aactgattac aatgactctc tttttgttgc tcaattatcc gaggctaatt ggagaggatt
      361 atccaatgag gttagtaaat ttattcaaga acaatggtgg aaatagacct attcgcaact
      421 tccattacct gtatttattc cgcttttatt gattgtttca attgcagaac aacatcgtga
      481 tgcaagcatt tctgggtcca agcaaccatt ttctacagct ttaagtacag cctgtttgat
      541 atggtattta tcctcatcag acaggccatt ctctacaacc tttaattcca aatctttagg
      601 gcttcctagt tgttcattta aaataacaac tttcgcaatt tcaaaatttt tgtttttcat
      661 aattacctcg tgtttaaatt attccaaaac ccactcataa taggctttgg aataaatgcg
      721 tgtctgccca cgccgtcgcc cgccctgcat ttcgcctgtt cagtcgggtg ctgcttgtat
      781 ccgtacttac tcaaacttga gataagcgtg attgcttagg actgatacca gtgttgcctt
      841 ttcagctctc cacaccttgc gagtgtgttg cctaaacctt gccacctctg tttggcaagt
      901 cgttcaaatt tgtatgtcag ggtctaacca accttgccga gtgataaagc attactttac
      961 aactgctcga ggttgttaat atcgtccgca caagcactaa attgttaaag aacatcccac
     1021 agtctctgct tatctctcgg ctattgcctg ctatgtgggc taggtctaga acctttattc
     1081 aagccctcag taaagggctt tgataaaaat tcttagtgaa tgtaggcttg ccaaagttgt
     1141 tgagcttgtt ctgcgttcat tttgtcgctt tggttccagt cgattaactt gccatttctg
     1201 aacattgctc tttcaatcac aaactcttgc gtggtttcat tttcaaagac ctcaaacaca
     1261 ttgatgaaat cactagtgcg tttttcttta cgtccgcata aaatgtagtc tttgtggtta
     1321 tttagcgttg cttgtgcgtt cattttggtt tcctctttgt ctgtgacgtt gtttgttttg
     1381 atgtgcttat attatcttaa agataaaaag acaacaataa caatttaact aaaagataat
     1441 aaatttacta tcgtttattg ttatctattt gaatttaaaa gaaaataaaa ttttggaggg
     1501 cg
//
LOCUS       DANLRW010000206         1484 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.207, whole genome shotgun sequence.
ACCESSION   DANLRW010000206 DANLRW010000000
VERSION     DANLRW010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1484
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.207"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            39..362
                     /locus_tag="PXA71_002540"
     CDS             39..362
                     /locus_tag="PXA71_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDL5106594.1"
                     /translation="MKLSSELQNQINQLNQLRKQALKQEQDEQKLFEKNKIEDLPHFG
                     TQLNAQRKLLGIELTTLEMQTGISSSTLKRLFKDPSQVKFQTICIVAETLGFNLCAIN
                     THKQE"
     gene            complement(439..1457)
                     /gene="glpX"
                     /locus_tag="PXA71_002541"
                     /pseudo
     CDS             complement(439..1457)
                     /gene="glpX"
                     /locus_tag="PXA71_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484632.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
BASE COUNT          459 a          353 c          264 g          408 t
ORIGIN      
        1 tgaacacata aataatctac ttttagctca aaaataaaat gaaactatca agcgaactac
       61 aaaatcagat aaaccaacta aatcagttac gaaaacaggc actcaaacaa gagcaagacg
      121 agcagaaatt gtttgaaaaa aataaaattg aagatttgcc acattttggc acgcagctta
      181 atgctcagag gaaactatta ggcatagaat taaccaccct tgaaatgcaa accggcattt
      241 caagctctac cctaaaacgc ttatttaaag acccaagcca agtgaaattt cagacaattt
      301 gtattgtggc agaaacactc ggctttaatt tatgtgcaat taatactcac aaacaagagt
      361 aagcgtgaca atgtagtgat tttgattact ttgggaagac aaaaaatcgg gctaaaagcc
      421 cgatttatca gagaaaagct ataaatccaa taaagaaagg agttcgttat ctttacgatc
      481 gacataatgg tcggattgaa ttttacgaat ggttctagat ttgccacgaa taagtaaggt
      541 ttcagtgctg gcaatattgc ctctacgttt aatccctttt aacaattcac ctgaagtaat
      601 gccggttgca acaaagacga tattgtcatc acgcaccaaa tcttctaatt tcaacaccgt
      661 attcaccggt acattcattt cattacagcg taaaagctct ttttcggtag cagttaaatt
      721 ttccgggcta ttccccttca cttggttgcg aggaattaaa cgtgcttgca tatcgccacc
      781 caatgcacga accgcagccc ccgccactac cccttcaggt gctccgccga taccataaag
      841 cagatccaat tcgctctctg gcaaacagca ttgcaccgca gccgcaacat cgccatcagg
      901 aatcgcaatc actcttaccc ctaatttttg cacatcggca attatttttt cgtggcgagg
      961 cttagcaaga tagcaatggt taattgggaa agtaatttgc cctttttcga ggcgacacgg
     1021 cgaagatttt gttcaagcgg aagatttaaa tcaatcattc ctttgcattc ctgccccacc
     1081 actaattttt ccatatacat atcaggggct tttaaaaagg tttctttgcc gcctgctgct
     1141 aataccgaca acgcatttgc ctgccccatt gcagtcatac gagtaccgtc aatcgggtca
     1201 accgcaatac tgatttcctc atcttctagg cgggatagac cgattttctc gccaatataa
     1261 agcatcggtg cttcgtcaat ttcgccctca ccaattacca cttcgccacg gatttccatt
     1321 tggttcagca taaaccgcat tgctttcacc gcagcttcat cagcggcatt tttatcccca
     1381 cggcctagcc aagagtaagc tgctagagcc gctgcttccg taacacgaga aaattcaaaa
     1441 gaaagagttc gtttcatttt tgttccttag tttcttgaaa gaaa
//
LOCUS       DANLRW010000207         1398 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.208, whole genome shotgun sequence.
ACCESSION   DANLRW010000207 DANLRW010000000
VERSION     DANLRW010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1398
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.208"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            5..376
                     /locus_tag="PXA71_002542"
     CDS             5..376
                     /locus_tag="PXA71_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005620157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding domain-containing protein"
                     /protein_id="HDL5106595.1"
                     /translation="MKEGIATNKFAINKPSAKLHIVDGNLFLVTPVIFEMYLQECGQP
                     YDKETINNLQYDFQGLGLHSLKKTMTNGKPDTINFWKCDVIGPRKTSSLTGYLIKNTH
                     LLFGDKMLLNNHCLTLQEEDT"
     gene            416..1294
                     /locus_tag="PXA71_002543"
     CDS             416..1294
                     /locus_tag="PXA71_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005602567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDL5106596.1"
                     /translation="MFFYRHYLRADTKRSYNNIIRIIKKRYPNLNANDVTTDMLIEWR
                     NQVVGNTIKAVTWNNYVRHLKALYNFAIAQGLLCMSSNPFNHLFIRESRRKKKTYSSE
                     QLHKIDYILHNNIILPSFLKPSWFILAIIMTLRCTGIRRGQLVKLKIGDVNLSNRTIY
                     ISPEINKNHDYHIVPISDSLYPHIERLIQELKIHKQTDDCQLFNLNLFSRYTRRKGQP
                     MSQNQLTHIFRHISDLVGFTSSPHRFRHTVATQLMKKPENVYVVKKLLGHKDISVTLG
                     YIEYDVEMLRDTVNLL"
BASE COUNT          494 a          208 c          241 g          455 t
ORIGIN      
        1 ttggttgaag gaggggatag caaccaataa atttgcaatt aacaaacctt ctgcaaaatt
       61 acatatagta gatggtaatt tatttttagt cacaccagtt atttttgaaa tgtatttgca
      121 agaatgtggc caaccttatg ataaggaaac tataaacaat cttcagtatg atttccaggg
      181 gcttggtctt cattctctta aaaaaaccat gactaatggt aagccagata caataaattt
      241 ttggaagtgt gacgtgattg gtcctagaaa gacttcctct ttaacaggat atttgataaa
      301 aaatactcat ctcttatttg gggataaaat gttactaaat aaccactgtt taactttaca
      361 ggaagaggac acataatatg gattctaaga tttccttcga tatattattg gaacgatttt
      421 tttctatcgt cattatttac gggcggacac gaaacgaagt tataacaata ttattcgaat
      481 tatcaaaaag cgttatccaa acttaaatgc gaatgatgtg actactgata tgttaattga
      541 atggcgtaat caagttgttg gtaatacaat taaagctgtg acgtggaata attatgtgag
      601 acacctaaaa gcattatata attttgcgat agcacagggg ctactttgca tgagtagtaa
      661 tccatttaat catttattta ttagagaatc tagaagaaaa aagaaaactt attccagtga
      721 gcagttgcat aaaatcgatt atattctaca taataatatc atcttaccta gttttttaaa
      781 acctagctgg tttattcttg ctatcattat gacattgaga tgcacaggaa ttaggagagg
      841 gcaattggtt aaactgaaaa tcggtgatgt taatttatca aataggacga tctatatttc
      901 accagaaatt aataaaaacc atgattatca tatagtaccg atatccgatt cactttatcc
      961 ccatatagaa aggctgattc aggagttaaa gatccataaa caaacggatg attgccagtt
     1021 atttaacctc aatttatttt ctcgttatac tcgtaggaaa ggtcagccga tgagccaaaa
     1081 ccagcttact catatattta ggcatatttc cgatttggtt ggcttcacgt catcaccaca
     1141 tagatttcgg catacagtag ctactcaatt gatgaagaaa cctgaaaatg tttatgtagt
     1201 taagaaatta ttaggtcata aagatatcag cgttacatta ggatatattg aatacgatgt
     1261 ggaaatgcta cgagacaccg tgaacttact ctaataaaag agaaatgaga gaaaactatt
     1321 ctctcattta ttgtgataaa taggaaactt ctgtcttatt ttcagatgaa ttgattttga
     1381 gaactttatc aaaatata
//
LOCUS       DANLRW010000208         1357 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.209, whole genome shotgun sequence.
ACCESSION   DANLRW010000208 DANLRW010000000
VERSION     DANLRW010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1357
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.209"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            322..576
                     /locus_tag="PXA71_002544"
     CDS             322..576
                     /locus_tag="PXA71_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106597.1"
                     /translation="MICHADPEYVKYNYAGLWEKGSDGTFFCNYQQFMPEVEAKESLR
                     KQEPELDDRYNEEEYSEEEYPDENDASDENDNYDETYNVF"
     gene            776..952
                     /locus_tag="PXA71_002545"
     CDS             776..952
                     /locus_tag="PXA71_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106598.1"
                     /translation="MATSSFDKRFVVKDPKAVKVLIEALQSPIKVVLPKKDLEKEEKE
                     ALCAIKKRLASMGL"
     gene            913..>1357
                     /locus_tag="PXA71_002546"
     CDS             913..>1357
                     /locus_tag="PXA71_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106599.1"
                     /translation="MCNQKTLSLYGLVKELGIEKTQLFLEQAFSCSRNKDVESFLLNK
                     AIRFETALAAATHLIINEQGDILAYFTLSFKEIEVEVSKSQLKKLTAGLSNDSHLRVL
                     LIGQIGKNEKVIDNPAKLPDILNHIYAQLYKAQRVLGGRVVILECE"
BASE COUNT          499 a          237 c          234 g          387 t
ORIGIN      
        1 ccgctactca acatacaggg atggttatct tgataacgct cacgatactc ttgagcaata
       61 gctagtaatt gctgattagt catataaagt ctccaataac ataataaacc tgaaaacgtt
      121 cttagtattc tggcaacatt tttataaata gaaaccaaaa actatattca aatcattttt
      181 agtttctgct caacattcct atgtttttcc atacactgaa gtaaatttac ctaaccctat
      241 tttgctgtga aaccaaaact cctcacgctt atccttagta gcatttcgat gtcgctcact
      301 tatgccaccc ctcaattagg gatgatatgc cacgctgatc ctgaatatgt aaaatacaac
      361 tacgccggac tttgggaaaa aggcagcgat ggcacttttt tctgcaatta ccagcaattt
      421 atgcctgaag ttgaagctaa agaatcacta aggaaacaag aaccagaact tgatgataga
      481 tataacgaag aggaatatag cgaagaagaa tatcctgatg aaaatgatgc cagcgatgaa
      541 aacgataact acgatgaaac ttataatgtt ttctagtatg tatatggaaa ccggaggaat
      601 ccgtgattga aaaggcttgc atttccaaat atagtctata tattgtggta attgaaagta
      661 tttctatgct aacaagcata aggctatgta atcgaaaacc acccacaagg cctaaataca
      721 gtattattac agccatgagt aaccatggta atttaaatat ttaaggagtt ctataatggc
      781 aacatcatca tttgataaac gctttgtagt caaagatcca aaagctgtca aggtattaat
      841 tgaggcatta caaagcccaa tcaaagtagt tttacctaaa aaagacttag aaaaagaaga
      901 gaaagaagca ctatgtgcaa tcaaaaaacg cttagcctct atgggcttgt aaaagaacta
      961 ggtattgaaa aaacacaact ctttttggag caagcatttt cttgcagtag aaataaagat
     1021 gttgaaagtt ttctacttaa taaagcaatc agatttgaaa ccgcattagc agcagcaaca
     1081 catttaatca ttaatgaaca gggcgatatt ttggcttact ttaccctctc ttttaaagaa
     1141 attgaggtgg aagtaagcaa aagccaatta aaaaagctaa ctgctggttt aagtaatgat
     1201 tcacatttaa gagtattgct tatcggtcaa atcggcaaaa atgaaaaagt aattgacaat
     1261 ccagccaaat tgccagatat tctaaatcat atctatgcac aactttataa agcacaacga
     1321 gttttaggtg ggcgagtcgt tatattagaa tgtgaaa
//
LOCUS       DANLRW010000209         1288 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.210, whole genome shotgun sequence.
ACCESSION   DANLRW010000209 DANLRW010000000
VERSION     DANLRW010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1288
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.210"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            446..694
                     /locus_tag="PXA71_002547"
     CDS             446..694
                     /locus_tag="PXA71_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106600.1"
                     /translation="MISGEKMTWESLGASAIGGAIGGGIGATMKAGAVTASTLSALGG
                     GMGEGLYKSTSQGIKNSIGIKASCNQSGSDYGDGCDYQ"
     gene            706..909
                     /locus_tag="PXA71_002548"
     CDS             706..909
                     /locus_tag="PXA71_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106601.1"
                     /translation="MKIQFPISYQEFRENYFEKKPLLMKGAISQKDLLSWKSINEILP
                     RCDLISEDAIKVMHKGKRAHKKD"
     gene            948..>1288
                     /locus_tag="PXA71_002549"
     CDS             948..>1288
                     /locus_tag="PXA71_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_046701250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDL5106602.1"
                     /translation="MKITHCKLKKSLQKKLLEFFVAEVTARTAADLLGIQPNTAALFY
                     HKIRLVIEHHLALEAHEIFEGKIEVDESYFGGHRKGKRGRGAAGKVAVFGLLKRQGKV
                     FTKYQIRNANAG"
BASE COUNT          430 a          169 c          294 g          395 t
ORIGIN      
        1 ttcaaaaata aataagagga gagaaaatga aagatcttag tattaaggat tgtgaaataa
       61 tatatggagg catagcccct ttgtggtggg atggtactgg cattacatca tactgggaac
      121 taaattatac caccctacca ctagtatttt agtttatacg gctagataaa tatgattttt
      181 gaaaaaatat tacttatatt gattatccca ttcatattat caagaattgt gtctattctt
      241 cttgtaaaga agattgtaaa aaataaaaat gtacaagatg ttattgaggc tatagttcta
      301 atagtatttg ttgtaattat aaacatcata gaggaatatc tcttatgaaa gagttaaaaa
      361 ttgaggattg ccaatttgtt tcggcaggct tgcacttgtt attgtaggag ctgttgctgg
      421 agctgcatat tatgttggga atggtatgat ttctggggaa aaaatgactt gggagagttt
      481 gggagcatca gctataggtg gggctattgg tggcggtatt ggagcaacaa tgaaagctgg
      541 tgcggtgaca gcgtcaacct tatctgcttt aggtggtggt atgggggagg gcttgtataa
      601 aagtacttct caaggtatca aaaatagtat tggtataaag gcgagttgca atcaatcagg
      661 ttcggattat ggtgatggat gtgattatca ataagagagt atattatgaa aattcaattt
      721 ccaatttctt atcaagaatt tcgtgaaaac tattttgaga aaaaaccact tttaatgaaa
      781 ggagcaatat ctcagaaaga tttactttct tggaagtcaa taaatgaaat attacctcgc
      841 tgtgatttaa tttctgagga tgcaattaag gtaatgcata aagggaaaag ggctcataaa
      901 aaagattagg ggctgtagta gattagcatc actgctatac tacaaaaatg aagataaccc
      961 attgtaaatt aaagaaatct ttgcagaaaa agcttcttga attttttgtt gctgaagtga
     1021 ccgctagaac cgctgctgat ttattaggta ttcaacccaa tacggcagcc ctgttttacc
     1081 acaaaattag gctggtcatt gaacaccatt tagcccttga agctcatgaa atttttgagg
     1141 gaaaaattga ggtagatgaa agctattttg gtggtcatcg caaaggaaaa cgagggcgag
     1201 gtgcggctgg gaaagtcgct gtattcggtt tgttgaagcg tcaaggaaag gtgtttacaa
     1261 aataccaaat cagaaacgct aatgccgg
//
LOCUS       DANLRW010000210         1254 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.211, whole genome shotgun sequence.
ACCESSION   DANLRW010000210 DANLRW010000000
VERSION     DANLRW010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.211"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..1040
                     /locus_tag="PXA71_002550"
     CDS             <1..1040
                     /locus_tag="PXA71_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106603.1"
                     /translation="AATLVLSACGGSGSGGSSSTPNHPKPVLVPKTQNNLQAQNVPQA
                     QNASQAQNAPQAQNAPQAQNAPQVENAPQAQNAPQVENAPQAEVTPPVPQPQSQKIDG
                     SFDKIGSVKLNKEAQTLELSRFTLVDKLGTPPKFDKVSGKKIIEEKDFLVLNLSDINA
                     EQLSGDFLIRRSDDLFYGYYHDTNGKNLVDAADKFSQYFVVYDEKRVNDNISDKLTAT
                     YRKKEGFVYGSNPHTKEFAARISKLGDVEIKFENGQAQGSIKDEKDGNAEIFTIKGDT
                     KQLEITPTESNRIIIAILDQNQKSYTPGMEKAIMETKFIDSKAGNSDQKYLIGEAKSD
                     NWQAIMVSEKK"
BASE COUNT          449 a          241 c          233 g          331 t
ORIGIN      
        1 ttgctgcaac cttagtttta agtgcttgcg gaggaagcgg tagcggaggt tcgtcttcaa
       61 caccgaatca ccccaaacca gtactagtac caaaaacaca aaataatctt caagcacaaa
      121 atgttcctca ggcacaaaat gcctctcagg cacaaaatgc ccctcaggca caaaatgctc
      181 ctcaggcaca aaatgctcct caggtggaaa atgctcctca ggcacaaaat gctcctcagg
      241 tagaaaatgc tcctcaagca gaggttactc cgcctgtacc acagccacaa tcacaaaaaa
      301 ttgacggttc ttttgataaa attggttcag taaaactcaa taaagaggct caaactcttg
      361 agcttagtag attcactttg gtggataaat taggcacacc accgaagttt gataaagtaa
      421 gcggtaaaaa aattattgaa gaaaaagatt ttctcgtatt aaatttgtct gatattaatg
      481 ctgaacaact ctctggcgat tttcttattc gccgtagcga tgatctattc tatggctact
      541 atcacgatac aaatggcaaa aatcttgtcg atgctgccga taaattcagt caatattttg
      601 tcgtgtatga tgagaaacgg gtaaatgata atatctctga taaattaaca gcaacttacc
      661 gtaaaaaaga aggctttgta tatggttcaa atccacatac taaagaattt gccgcacgga
      721 tcagcaaatt gggggatgta gaaattaaat ttgaaaatgg tcaagctcaa ggaagtataa
      781 aagacgaaaa agatggaaat gctgagatct ttactattaa aggtgataca aaacagttag
      841 agattacccc aacggaaagt aaccgaatca ttatagcaat tttagaccaa aatcaaaaaa
      901 gctatactcc aggaatggaa aaagcaatta tggaaactaa gtttattgat tcaaaggctg
      961 gtaattccga ccaaaaatac ttaatcggtg aagcaaaaag cgataactgg caagcaataa
     1021 tggttagcga gaaaaaataa agttatcttt tgctaaaaac tgaaataaaa aggctgagtc
     1081 cgggtaatat cggcctcagt cttttaaatt gtagaaaatc atctgtagaa gatcaaacct
     1141 aatctgacag tcccccgttt taaattaccg tgtctgtcag attaatttga gcttaaattc
     1201 ttttccaccc aaatccgttt tccatcaagt aaggttgcca tcggtgttct gcca
//
LOCUS       DANLRW010000211         1185 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.212, whole genome shotgun sequence.
ACCESSION   DANLRW010000211 DANLRW010000000
VERSION     DANLRW010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.212"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            137..412
                     /locus_tag="PXA71_002551"
     CDS             137..412
                     /locus_tag="PXA71_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5106604.1"
                     /translation="MAKATVARRIKNAINGNFGDHKSLAGTGGLYEMRIATGAGYRIY
                     YAQQGNVIYILLHGGDKSTQQADIEKAKALWAELKTTGESNGNNTNQ"
     gene            390..713
                     /locus_tag="PXA71_002552"
     CDS             390..713
                     /locus_tag="PXA71_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative addiction module antidote protein"
                     /protein_id="HDL5106605.1"
                     /translation="METIQINEQAAEKHGLRPFDVAEFLTDEATIQAYLAEVLKEGDQ
                     DEFLEALNNVARARGMAELAKQTGLGRESLYKTLAKGSKPRFDTIQKILGAFNLVLIP
                     QVKNG"
BASE COUNT          418 a          223 c          229 g          315 t
ORIGIN      
        1 ccacttgatt atttgtatct taatggatac actaagcaat aaatagaata agaggctggc
       61 aatgacagag caaaccacta atcaaatcat cattaccgat aatttttcaa aatagcttga
      121 gaatttaaag aaccctatcg caaaagcaac ggtagcaagg cggataaaaa atgcgattaa
      181 tggcaacttt ggcgatcata aatctttagc cggtacaggc ggactttatg aaatgcggat
      241 agcaacagga gccggatata gaatttatta cgcacaacaa ggaaatgtaa tttatatctt
      301 gttacacggc ggcgataaat caacacagca agccgatata gagaaagcga aagcattatg
      361 ggctgaatta aaaactacag gggaaagcaa tggaaacaat acaaatcaat gaacaggcag
      421 cagaaaagca cggtttacgc ccttttgacg tggcggagtt tttaaccgat gaggcaacta
      481 ttcaagccta tttagcggaa gtgttaaaag agggcgacca agacgaattt ttagaagcct
      541 tgaacaatgt ggcaagggca aggggaatgg cggagcttgc caagcaaaca gggctaggga
      601 gagagagcct atataaaacc ctagccaaag gcagcaaacc acgctttgac actattcaaa
      661 aaattctagg ggcattcaat ttagtgctta ttccacaagt caaaaatggc taaaacttat
      721 cacttgctac ctgccaaaac ctcacattca aatagccgtt gattgatatt aacggctttt
      781 ttattgctta attctgtacc aattacgcac cgattgcgga tcaatacggg gcaagttttc
      841 gcaaaacctt aatgaaatat gaccgcttgt gattttgtac aaaacgacac aaaccaatgt
      901 ataaaatcaa aacttgccac aaatggcgga atgatattaa atgccccaca aactagcagt
      961 atttcttaat gacttttcat tttaagggta catttaaggg tatgtttaac aagtcttaaa
     1021 tgcacttctc aataataaca agcctcatag catacaattc aaactcggct ggggaccatt
     1081 taagcgttgc atattgtctt tcactgtctc aaatttacta taaaatcaag aacttagatt
     1141 attttatagt ctcttattgt cttctttagt tgcattgtat cttag
//
LOCUS       DANLRW010000212         1173 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.213, whole genome shotgun sequence.
ACCESSION   DANLRW010000212 DANLRW010000000
VERSION     DANLRW010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1173
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.213"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..236
                     /locus_tag="PXA71_002553"
     CDS             <1..236
                     /locus_tag="PXA71_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
                     /protein_id="HDL5106606.1"
                     /translation="KTLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIYSYISP
                     KTGKRSTKNRIGSYPQMSLVEQSPQVFEQIARL"
     gene            288..875
                     /locus_tag="PXA71_002554"
     CDS             288..875
                     /locus_tag="PXA71_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SocA family protein"
                     /protein_id="HDL5106607.1"
                     /translation="MFDELKIAQATAYLLHKAGGTMEHIKVMKLLYLADRLSWQRYGY
                     SISNDEYYSLPYGPVLSNTLNLMRGEEASLYQKTSIWGEWIADKEDHKISLKKSVNTE
                     DEYFFDCLSESDTEILEEVFATFGNYKPFALVEYTHNPKYIPEWEDPQGRSKPISLST
                     LLTKLGKTPSEIESILEQQAEKGTMDNLFKGLGNA"
     gene            868..>1173
                     /locus_tag="PXA71_002555"
     CDS             868..>1173
                     /locus_tag="PXA71_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106608.1"
                     /translation="MLEIKRQVTILRPTNYGKEENHYKHLYILLTDPCFDGETGKGDM
                     ILSVNCSSIKDGKALDETCILKAGTHEFITRDSFIFYRHIKIDSLDEIKANIEAGYFI
                     "
BASE COUNT          428 a          222 c          236 g          287 t
ORIGIN      
        1 aaaaaacact ttcagacaca ttactaaaaa atcttaaata ttccccaaat gcgaagccta
       61 tcgcagacag taacgggcta tttattcttg cacagaaaaa agcgaaagta tggatttata
      121 gctatatcag ccccaaaaca ggcaagcgaa gcacaaaaaa tagaatcggt agctatccgc
      181 aaatgagctt agtggaacaa tccccacagg tatttgaaca aatcgcacgt ctttaaaata
      241 ttaaattaag agaaagcact atttgcgatg tagcaggaga taaaacaatg tttgatgaat
      301 taaaaatagc ccaagcgacc gcctatttgc tacataaggc aggcggaaca atggagcata
      361 ttaaggtaat gaaattgctt tatcttgcgg atcgcttatc gtggcaaaga tacggctatt
      421 ctatttctaa tgatgaatat tattcattgc cttatggacc ggtattaagc aacacactca
      481 acctaatgcg aggagaagaa gcgagcttat accaaaaaac cagtatttgg ggcgagtgga
      541 tagcagataa ggaagatcac aaaatcagcc ttaaaaaatc cgtaaatacc gaagatgaat
      601 acttctttga ttgcctttca gagagcgaca ccgaaatttt agaagaggta tttgcgacct
      661 ttggaaatta taagccattc gccctagtgg aatataccca taaccctaaa tacattcccg
      721 aatgggaaga cccacaaggc agaagcaagc cgatttcttt aagcacgctt cttactaagc
      781 tagggaaaac gccaagcgag atcgaaagca ttttagagca acaggcggaa aaagggacaa
      841 tggataacct tttcaagggc ttaggcaatg cttgaaatca aaagacaagt aacgattctt
      901 agaccgacca actacggcaa ggaagagaac cactacaagc atttatatat tctgcttacc
      961 gatccgtgct ttgatggtga aaccggtaaa ggagatatga ttttaagtgt aaactgctca
     1021 agcattaaag acgggaaagc acttgatgaa acttgtattt taaaggcagg aacacacgaa
     1081 tttatcacac gggacagctt cattttctac cgccatataa aaattgattc gttagatgag
     1141 attaaggcaa atatagaagc cggttatttt att
//
LOCUS       DANLRW010000213         1168 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.214, whole genome shotgun sequence.
ACCESSION   DANLRW010000213 DANLRW010000000
VERSION     DANLRW010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.214"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(25..>1168)
                     /locus_tag="PXA71_002556"
     rRNA            complement(25..>1168)
                     /locus_tag="PXA71_002556"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          251 a          363 c          247 g          307 t
ORIGIN      
        1 acttgctgtc gttctcgatt ttggtaagga ggtgatccaa ccgcaggttc ccctacggtt
       61 accttgttac gacttcaccc cagtcatgaa tcataccgtg gtaaacgccc ccctttcggt
      121 taagctatct acttctggta caacccactc ccatggtgtg acgggcggtg tgtacaaggc
      181 ccgggaacgt attcaccgca acattctgat ttgcgattac tagcgattcc gacttcatgg
      241 agtcgagttg cagactccaa tccggactta gacgtacttt ctgagattcg ctccccatcg
      301 ctggctcgcc gccctctgta tacgccattg tagcacgtgt gtagccctac tcgtaagggc
      361 catgatgact tgacgtcatc cccaccttcc tccggtttat caccggcagt ctcctttgag
      421 ttcccgacct aatcgctggc aacaaaggat aagggttgcg ctcgttgcgg gacttaaccc
      481 aacatttcac aacacgagct gacgacagcc atgcagcacc tgtctcatgg ttcccgaagg
      541 cactctcata tctctacaag attccatgga tgtcaagagt aggtaaggtt cttcgcgttg
      601 catcgaatta aaccacatgc tccaccgctt gtgcgggccc ccgtcaattc atttgagttt
      661 taaccttgcg gccgtactcc ccaggcggtc gatttatcac gttagctacg ggcaccagag
      721 ttaaacccca atccccaaat cgacagcgtt tacggcgtgg actaccaggg tatctaatcc
      781 tgtttgctcc ccacgctttc gcacatgagc gtcagtacat tcccaagggg ctgccttcgc
      841 cttcggtatt cctccacatc tctacgcatt tcaccgctac acgtggaatt ctacccctcc
      901 ctaaagtact ctagttgtcc agtctgaaat gcaattccca ggttaagccc ggggctttca
      961 cacctcactt aaacaaccgc ctgcgtgccc tttacgccca gttattccga ttaacgctcg
     1021 caccccccgt attaccgcgg ctgctggcac ggagttagcc ggtgcttctt ctgtgattaa
     1081 cgtcaatcga ctgttctatt aaaacaatcg ccttcctcgt caccgaaaga actttacaac
     1141 ccgaaggcct tcttcattca cgcggcat
//
LOCUS       DANLRW010000214         1145 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.215, whole genome shotgun sequence.
ACCESSION   DANLRW010000214 DANLRW010000000
VERSION     DANLRW010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.215"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..808
                     /locus_tag="PXA71_002557"
     CDS             <1..808
                     /locus_tag="PXA71_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AlwI family type II restriction endonuclease"
                     /protein_id="HDL5106609.1"
                     /translation="TISEAFKLDISKVYVALSKDLGITIKSPEQAATYVNDERYRRFN
                     TLIDKKFNDSVLIELLNCFEKRDDKRIEELVTDEAAIPTIFEYILGIIWYKVSERQGN
                     ILDFMKLSLEANLLPKTHAAGGYADIIYEYEACTSYPKHSLLLEATLADGNNQRRMEM
                     EPVSRHLGDYRIRFNNPFDYSLFVSTYLDKNVISDFRYRKIIPYTRDEETITGMKIIS
                     MDTDSLKKIIENKVKYKYLYEIFDKYHEMPLETVDWHDGMIKEATGEYKS"
     gene            870..>1145
                     /locus_tag="PXA71_002558"
     CDS             870..>1145
                     /locus_tag="PXA71_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HDL5106610.1"
                     /translation="MKNRIEHPKIFISYAWGSQEHDEKVIALATNLKGDGIDVIFDKW
                     QLKEGNDTFKFMEKSVLDESITNVLILIDPIYAKKANERAGGVGTETQ"
BASE COUNT          436 a          138 c          234 g          337 t
ORIGIN      
        1 aactatatca gaagcattca agttagatat tagcaaagta tatgtagctt taagtaaaga
       61 tttaggaatt acaattaaga gtccggaaca agctgcaact tatgtaaatg atgaacgata
      121 cagaagattt aatactttga tcgataagaa atttaacgat tctgtgctta tagagttact
      181 aaattgtttt gagaaacgtg atgataaaag gattgaagaa cttgttacag atgaggctgc
      241 aatacctact atttttgaat atattttggg aattatatgg tacaaagtga gcgaaagaca
      301 aggaaatatt ttggatttca tgaagttatc attagaagcc aatttattgc cgaagaccca
      361 cgcagctgga ggttacgcag acattatata tgaatatgaa gcgtgcacct cttatccgaa
      421 acattcatta ttgcttgaag caacccttgc agatggaaat aatcaaagaa gaatggaaat
      481 ggagcctgtt tcaagacatt taggcgatta taggattaga tttaataatc cgtttgatta
      541 cagcctattt gttagcacat acttagataa aaatgtaatc tcagatttta gatatagaaa
      601 gataattcca tacaccagag atgaagaaac cattacagga atgaagatta tttcaatgga
      661 cacagattct cttaagaaaa taattgagaa taaggttaag tacaagtatc tgtatgaaat
      721 atttgataaa taccatgaaa tgccattaga gactgtagat tggcatgatg ggatgataaa
      781 agaggctact ggagagtata agtcatagtg attataagat agtgagaaag aatacttatt
      841 ttgaaaggaa tacatgggaa ttgatacaga tgaagaatag aattgaacat cctaagattt
      901 ttatttcata tgcttgggga tcacaggaac atgatgagaa ggttattgct ttagctacaa
      961 atcttaaagg agatggtata gatgtcattt ttgataaatg gcagctaaaa gaaggcaatg
     1021 atacctttaa attcatggaa aaaagtgttt tagatgagag tattaccaat gtactgattc
     1081 ttatagatcc tatttatgca aagaaagcaa atgaaagagc cggtggcgta ggtacagaaa
     1141 cacag
//
LOCUS       DANLRW010000215         1129 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.216, whole genome shotgun sequence.
ACCESSION   DANLRW010000215 DANLRW010000000
VERSION     DANLRW010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.216"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..120
                     /locus_tag="PXA71_002559"
     CDS             <1..120
                     /locus_tag="PXA71_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HDL5106611.1"
                     /translation="LSHTNKDTVMSAYHRKNWLDRRRGIMQEWADFVEQCKSI"
     gene            590..796
                     /locus_tag="PXA71_002560"
     CDS             590..796
                     /locus_tag="PXA71_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family transcriptional regulator"
                     /protein_id="HDL5106612.1"
                     /translation="MENTPAKQRFMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGA
                     NSKVWLESEIQQWIQRKIEQHRNQ"
     gene            806..>1129
                     /locus_tag="PXA71_002561"
     CDS             806..>1129
                     /locus_tag="PXA71_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106613.1"
                     /translation="MTLETFNQQKAKFHEQEKAVLAIQTELDKAKNILEALQNEKAEF
                     VARQKTNLANIGTLSADEYVEIKNKNSGLQARIEYYQALIVDLENKCYAEQEILFQQQ
                     NELKQI"
BASE COUNT          435 a          239 c          196 g          259 t
ORIGIN      
        1 ttatcccaca cgaacaaaga caccgtaatg agtgcatacc accgtaaaaa ctggctagac
       61 cgcagacgtg gaataatgca ggaatgggcg gattttgtag aacaatgcaa gagcatttaa
      121 atgacaaagg cggagcaatc cgcctttctt tttgcttgat gaaaaatttt cattttttcc
      181 tatcagctcc cagcccgtgc cgtctatccc acgcctcgcc cgcacactta aagtctcgat
      241 ttctacgcaa atgcaaaatt aagcccaaac attgccccgt atagcgtgaa aaactttcat
      301 atagccgttt tttattacgc aattttacgc aagaaaacgc aaatttacgc aggcagaaac
      361 accactttta aaaactcgat gacagaacga tgaaagaacc gctgaaaact tgcaaaaaat
      421 cagagaaaaa taaccgcttg caagttttcc aaatcagaat taagcccctc taatctgtaa
      481 aatctccttt cacagcccta acaaatagca aaaaatccaa gatgatttat tctttcacac
      541 gttagcaggc aatagcacgc caaagcaaat ttttacggag taaaacaaaa tggagaacac
      601 accagcaaaa cagcgattta tgaaaataga tgaagtttca gccgtaacta cgctttcaga
      661 aacgcagatt tatcgcaaaa tgaaagccgg cgattttccc caaagtatca gtattggggc
      721 aaatagcaaa gtatggctag aaagtgaaat ccagcaatgg attcaacgca aaattgaaca
      781 acaccgcaac caataagggc aaattatgac acttgaaaca tttaaccaac aaaaagctaa
      841 attccacgaa caagaaaaag ccgttttagc tattcagacc gaattagaca aagcgaaaaa
      901 tattcttgag gcattgcaaa acgaaaaagc ggaatttgtc gcacggcaaa aaacgaattt
      961 agccaatatc ggcacgcttt cagcagatga atatgttgaa atcaaaaata aaaatagtgg
     1021 tttacaagca cgcatagaat attatcaagc gttgattgtt gatttagaaa ataaatgcta
     1081 cgcagagcaa gaaatattat tccaacagca gaatgaacta aaacaaatc
//
LOCUS       DANLRW010000216         1127 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.217, whole genome shotgun sequence.
ACCESSION   DANLRW010000216 DANLRW010000000
VERSION     DANLRW010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1127)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1127)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1127
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.217"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..253
                     /locus_tag="PXA71_002562"
     CDS             <1..253
                     /locus_tag="PXA71_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106614.1"
                     /translation="IALWTVYSHLDTKVEARFSKIDDKFVQVETNIKNLDIRLTKVES
                     RLDNVEQRLDNVEQRLGNMEKKIDGVDNKLDLLLQQFKR"
     gene            385..567
                     /locus_tag="PXA71_002563"
     CDS             385..567
                     /locus_tag="PXA71_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HDL5106615.1"
                     /translation="MKYSEFLRYLLAQGCEIENHRRGSHRKVTLNGKQSVFPYHGSKE
                     IGTGLVNKIKKDLDLK"
     gene            606..1025
                     /locus_tag="PXA71_002564"
     CDS             606..1025
                     /locus_tag="PXA71_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012621799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDL5106616.1"
                     /translation="MLRYPVEITPDDNGTYLVTCPDIPEMASVGEDLEEALLEAQDGL
                     ATALEFYFDDRREIPMPSPIKEGQHTVNLTVLQSMKVFLLNEMIKQGVRKAEMARRLD
                     VHLPQIDRLLDFNHSTKVEFVEKAYGKLNQHFTILPH"
BASE COUNT          399 a          208 c          207 g          313 t
ORIGIN      
        1 aattgcatta tggacagtat attcacacct tgacaccaaa gttgaagctc gattctcgaa
       61 aattgatgat aagtttgtcc aagtagagac caatatcaaa aatcttgata ttcgcctcac
      121 taaagttgaa tctagattag ataatgtcga acaacgacta gacaatgttg agcagcgact
      181 aggcaatatg gagaagaaaa tagatggggt tgataataaa ctcgatctgt tactacaaca
      241 attcaaaaga taaaataata ttccttgaat aaaccgccct cgtggcggtt ttcttttctg
      301 ctacaaaaaa aacacaacaa aaatgttgta ataccaacaa aaatgttgta ttatttcctt
      361 gctgttttga taaggaggta tcttatgaaa tacagcgagt tcctgaggta cttacttgct
      421 caaggttgcg aaattgaaaa ccataggcga ggcagtcatc gaaaggtaac actaaacgga
      481 aaacaatcgg tttttcctta tcacgggagc aaagagattg gtacaggttt agtaaataag
      541 attaagaaag acttagatct taaataacaa agtccctcga aagaggggct tttctaggag
      601 tttatatgtt acgctaccca gttgaaatta cccctgatga taacggcaca tatcttgtga
      661 cttgccctga tattcctgaa atggcaagcg taggtgagga cttagaagaa gccctattag
      721 aagcacaaga tggcttagcc acagcccttg aattctattt tgatgataga cgagaaatac
      781 caatgccaag cccaattaaa gagggacaac atacggttaa tcttaccgtg ctgcaatcaa
      841 tgaaagtatt tctcttaaat gaaatgatta aacaaggtgt acgcaaagca gaaatggcaa
      901 gacgattaga tgtacactta ccacagatag atcgcctatt agattttaat cattccacaa
      961 aagtagaatt tgttgagaaa gcctatggta agctaaatca acactttact attctccctc
     1021 actaataaaa taaccgccta cgggcggttt tctttttcct aaaatctgca aaattctctt
     1081 caaaaacgac cgcttgcaac tcaatctgtt tatttattaa gcaatca
//
LOCUS       DANLRW010000217         1106 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.218, whole genome shotgun sequence.
ACCESSION   DANLRW010000217 DANLRW010000000
VERSION     DANLRW010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.218"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            245..505
                     /locus_tag="PXA71_002565"
     CDS             245..505
                     /locus_tag="PXA71_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106617.1"
                     /translation="MTFELGRVCATRAVAECFNQHTLVDLLHRYCSGDWGNLCDNDKK
                     ANVKAIERGGRILARYDVEDETLYVITEADRSYTTILFPYEY"
     gene            595..>1106
                     /locus_tag="PXA71_002566"
     CDS             595..>1106
                     /locus_tag="PXA71_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106618.1"
                     /translation="MFQYAILIIFPLCRTITNELSMEKQIYNRRKTLFGNEETAALYY
                     AAKDIIFEYEIYKPYSIYDDETISSLTLFNCFRYSKNKITHQIQVEYFCFDKKQWIKE
                     VHKYSKGGFKRCVNIPFFRFSKFFLNNAQRTAFSYVTHYIKKHSYAYSKADNIQELLV
                     KFFSRKQPVM"
BASE COUNT          368 a          168 c          184 g          386 t
ORIGIN      
        1 tttgattatt atatcaatgc aatagatacg catttctata ttaatagcca aagaatctgt
       61 gatatagatg attggaatga aatgttagat aagattcgtg aagaaatgac gccggctaaa
      121 ttagttgcct aatttttgca aatttttact aaaaatgacg cttactgtcg tcttaattca
      181 cccacttggg gaaatatctc cccaatggga tgacatttcc cctctttctg tttaggagaa
      241 atgtatgaca tttgagcttg gtagagtatg tgcaactcgt gcagttgctg aatgtttcaa
      301 tcaacataca ttagttgatc tacttcatcg ctactgcagt ggtgattggg gaaatttgtg
      361 tgataacgac aagaaagcca atgtgaaagc tattgaacgc ggaggacgca ttttagctcg
      421 ctatgatgtg gaagatgaaa cactttatgt aatcacagag gctgatcgta gttacactac
      481 aattttattt ccttatgaat attaatggag cttccattta taccctacat ttttatgtta
      541 tcaaacgccg tcaaatgatg gcgtttttct attttatatc tttcgatttt atagttgttt
      601 caatatgcaa ttttaattat ttttcctctt tgtagaacaa ttacaaatga attaagcatg
      661 gaaaaacaaa tatataacag aagaaaaaca ttattcggca atgaggagac ggctgcactt
      721 tattatgcag ctaaagacat tatctttgaa tatgaaattt acaaacctta ttctatctat
      781 gatgatgaaa ccatttcttc tctaacttta tttaactgtt ttagatatag taaaaacaaa
      841 attactcatc aaattcaagt cgagtatttt tgttttgata agaaacaatg gataaaggaa
      901 gttcataaat attcaaaagg tggatttaag agatgtgtta atatcccttt ctttagattt
      961 agtaagtttt tccttaataa tgcacaacga acagcctttt catatgtaac tcattacatt
     1021 aagaagcatt cctatgccta tagtaaggca gacaatattc aagaattatt agtaaagttt
     1081 ttctctagaa agcaacctgt tatgca
//
LOCUS       DANLRW010000218         1085 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.219, whole genome shotgun sequence.
ACCESSION   DANLRW010000218 DANLRW010000000
VERSION     DANLRW010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 1085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1085
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.219"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>1085
                     /locus_tag="PXA71_002567"
     CDS             <1..>1085
                     /locus_tag="PXA71_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5106619.1"
                     /translation="KPLSDTLLKNLKYSPNAKPIADSNGLFILAQKKAKVWIYSYISP
                     KTGKRSTKNRIGSYPQMSLAEARLKRDELNTLVLQGLDPFEHLAKMQREAKEKQESIQ
                     SFAYKWADWKLSKGKCKPKTMEKCLQRLENHLFPRFEGYTLEDFTLTDTINRLTDLDR
                     IMPDTLHRIAGNLIEILDYAVLCGRINFNPISVIKKAFSSVSTTHQPAIMPEELAEFM
                     QDLQKSNRTPQIKLLVEWQLLNILRPFEAVAVQWSDIDWETKTLNIPADRMKGGKNPH
                     SVPLTKQAIAILEEMKKYNGHHKHIFTHRTDRNKPANSQTVNNAIKRLSGGKYKGLLV
                     AHGLRSIASTYLHERFTTETLVIEACL"
BASE COUNT          400 a          219 c          212 g          254 t
ORIGIN      
        1 aaaaccactt tcagacacat tactaaaaaa tctcaaatat tccccaaatg cgaagcctat
       61 cgcagacagc aacgggctat ttattcttgc acagaaaaaa gcgaaagtat ggatttatag
      121 ctatatcagc cccaaaacag gcaagcgaag cacaaaaaat agaatcggta gctatccgca
      181 aatgagctta gccgaagcac gcttaaagag agacgaacta aatacccttg ttttacaagg
      241 cttagaccct ttcgagcatt tagccaaaat gcaaagagaa gctaaggaaa agcaagaatc
      301 tattcaatct ttcgcctata aatgggctga ttggaagcta tcaaagggaa aatgcaagcc
      361 taaaacaatg gaaaaatgct tacagcggtt agaaaatcat ttattcccac gttttgaagg
      421 ctatacgctg gaagatttta ccttaaccga tacaatcaac cgcttaacgg acttagatcg
      481 gataatgccc gacactttgc acagaatagc agggaattta atagaaattc ttgattatgc
      541 ggtattgtgt gggagaatta attttaaccc aatcagcgtc attaaaaagg cgttttccag
      601 cgtaagcacg acacaccagc cagcaataat gcccgaagag ttagccgaat ttatgcaaga
      661 cttgcagaaa tcaaatagaa cgcctcaaat taaattatta gttgaatggc aactcttgaa
      721 tattcttaga ccgtttgaag ccgtagcggt gcaatggagc gatatagatt gggaaactaa
      781 gacgctcaac attccggcag atagaatgaa aggcggaaaa aatccgcatt ctgtaccgct
      841 aacaaaacaa gctatcgcaa tcctagagga aatgaagaaa tataacggac accataaaca
      901 tatttttaca caccgaacag accgaaacaa accggctaat agccaaaccg tgaataatgc
      961 aataaaacgc ttaagcggtg gaaaatataa agggctttta gtggctcacg gtttaagaag
     1021 cattgccagc acctatttac acgaacgttt tactactgaa acgctagtaa ttgaggcttg
     1081 tttat
//
LOCUS       DANLRW010000219          981 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.220, whole genome shotgun sequence.
ACCESSION   DANLRW010000219 DANLRW010000000
VERSION     DANLRW010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..981
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.220"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>981
                     /locus_tag="PXA71_002568"
     CDS             <1..>981
                     /locus_tag="PXA71_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL5106620.1"
                     /translation="VHDIGKVVVDIEITLKDGSRWFAWNGQPPQPYKFKYIKGRDYHL
                     HPVLGGFLANQLIPKSAFDWLGQYPEVISSLMYAMSGHNDKAGLLSEIVQKADQHSVT
                     LAIGGDVNKLVQRPVNSLPKQIVLALRYLLEQKIKLNTPKGPADGWFTEDGLWLVSKT
                     AADNIRTYLLGQGISVPKDNPKLFDEMQSLGIVEESPSGGAIWSCRIQADSGWTPATT
                     FTLLRVKPEVAWENINDRPAYFAGKVKVIEQITEEVNAEVQPPLVEETTKISLLPSKQ
                     SEAIIPSEETEISKAITSSDNATSAEVIINNENDLTSFVLDMFAPTETIEQ"
BASE COUNT          293 a          193 c          231 g          264 t
ORIGIN      
        1 gttcatgata ttggcaaagt tgtggttgat attgaaatca ctcttaaaga cggctctcgt
       61 tggtttgctt ggaatggaca gccacctcaa ccttataaat tcaaatacat caaaggtcga
      121 gactaccatc ttcatccggt gctaggagga ttccttgcaa atcagctcat tcccaagtct
      181 gcgtttgatt ggctgggaca gtatccagaa gtcatttctt cactgatgta tgcaatgtct
      241 gggcataacg ataaagccgg gcttttatct gagatcgtgc agaaagccga tcagcatagt
      301 gttacgctag caatcggtgg cgatgtgaat aagctggtac agcgaccagt taattcattg
      361 ccgaagcaaa ttgtgctggc tctacgttat ttactggagc agaaaatcaa attaaatacg
      421 ccaaaaggac cagcagacgg ctggtttacc gaagatgggc tgtggctggt aagtaaaact
      481 gctgccgata atatccgaac ttatttactg ggacagggga tttccgtgcc taaagataat
      541 ccaaaactgt ttgatgaaat gcaatctctt ggtattgtgg aagagtctcc ttccggcggt
      601 gcaatttgga gctgccgtat ccaagccgat tccggttgga caccggcgac aacatttacg
      661 ctattacgag ttaaaccgga ggttgcttgg gagaatatca acgatagacc ggcgtatttt
      721 gccggaaaag tcaaagtgat tgaacagata actgaagagg tcaatgcaga ggttcagcct
      781 ccattagttg aagaaaccac taaaatttct ctattaccga gcaagcaatc ggaggctatt
      841 attccgtctg aggaaacgga aatatcgaag gcaattacaa gttcagacaa tgcaacatct
      901 gcggaagtaa tcataaataa tgaaaatgat ttaacttctt ttgtattgga tatgtttgct
      961 cctacagaga caattgagca a
//
LOCUS       DANLRW010000220          936 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.221, whole genome shotgun sequence.
ACCESSION   DANLRW010000220 DANLRW010000000
VERSION     DANLRW010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.221"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            88..>936
                     /gene="msrA"
                     /locus_tag="PXA71_002569"
     CDS             88..>936
                     /gene="msrA"
                     /locus_tag="PXA71_002569"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005546455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDL5106621.1"
                     /translation="MKYNQLLLCLVSAIFTTSSIANITTPNEMRSENLQDIYLAGGCF
                     WGIEAYMEKIYGVKEATSGYANGKTEQTAYRIIGQTDHAETVHVTYDANKISLEKLLQ
                     YYFKVIDPTSKNKQGNDIGRQYRTGIYYQNEQDKQIILKEIQAQQAKYKQKIQVQVEP
                     LKHYILAEEYHQDYLKKNPNGYCHIDLNQANSIIIDPKDYPKPSDATLKMKLTPLQYS
                     VTQRKNTERSFSNEYWDNTAPGIYVDITTGEPLFSSLDKYDSGCGWPSFTKPIINEVV
                     NYTEDNS"
BASE COUNT          360 a          168 c          159 g          249 t
ORIGIN      
        1 tagcaaaaaa gtaagaaatt atgaatgttt aaggttaaac cctcatcctt aaaaaataaa
       61 attacataag ttataaagga gaactggatg aaatacaatc aactgttact atgtttggtg
      121 tctgctatct ttaccacctc ctcaatagca aacatcacaa cccctaacga gatgcgatct
      181 gaaaacttac aggatattta cttggcagga ggatgtttct ggggcattga agcctatatg
      241 gaaaaaatat atggcgtaaa agaggctaca tcgggctatg ccaatggcaa aactgagcaa
      301 actgcttacc gaattatcgg gcaaaccgat catgcagaaa cagttcacgt gacctatgat
      361 gctaataaaa tttctttaga aaagctgttg caatattact ttaaagtaat tgatccaacc
      421 agtaaaaata aacaaggtaa tgatattggc cgccaatatc ggacaggtat ttattatcag
      481 aatgagcaag ataaacaaat tattttaaaa gaaatacaag ctcaacaagc aaaatacaaa
      541 caaaaaatac aagtgcaagt agaaccatta aaacattata ttttggcaga agagtatcat
      601 caggattacc taaagaaaaa tccaaatggc tactgccata ttgatttaaa ccaagccaac
      661 agcattatta tcgatccgaa agattatcct aaacctagtg atgcaacatt aaaaatgaaa
      721 ttaacgcctt tgcaatatag cgttacccaa cgtaaaaata ctgagcgttc attcagcaat
      781 gaatattggg ataataccgc accgggcatt tatgttgata taactacagg agagcctctt
      841 ttttcatctc tcgataaata tgactccggc tgtggctggc caagttttac caaaccaatt
      901 atcaatgagg ttgttaacta taccgaagat aatagt
//
LOCUS       DANLRW010000221          927 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.222, whole genome shotgun sequence.
ACCESSION   DANLRW010000221 DANLRW010000000
VERSION     DANLRW010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.222"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>927
                     /locus_tag="PXA71_002570"
     CDS             <1..>927
                     /locus_tag="PXA71_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcription antiterminator BglG"
                     /protein_id="HDL5106622.1"
                     /translation="IYLRYFYNQQPELLLPKLNFNYQQTNEYQFVIKLLEQLREQDSR
                     FEFNPEVIRFLTYIAIASTDLYRFKDCNSDNYPLLLDKAWEIHRFIFTQFSAYLNLSE
                     IHDDTCRKDLLKMLIPIAMKMMLSISDDVDLGLFNQTELHRNPILAHTVEKLVDDIEK
                     NYGYSLSIREQYFIFDIFSGMVNRIELERKPLRLAIIALNGRLSTQQLKRNIKRYFSD
                     YILKIETKVLYELAIMEDKPYDYYLCNEYGKNMAIPYKPIYFADSSLNENEYATSLNE
                     VFYHAYQYDEVLPSIKSIEIEAQYRLNEFHLE"
BASE COUNT          306 a          151 c          160 g          310 t
ORIGIN      
        1 ttatttactt acgctatttt tataatcaac agcctgagtt attgttaccg aagttaaatt
       61 ttaattatca acagacgaat gaatatcagt ttgtaattaa gttactggaa cagcttcgtg
      121 aacaagacag tcgttttgag tttaatccgg aagttattcg atttctgacc tatattgcga
      181 tagccagtac agatctctac cgctttaaag attgtaattc ggataattac ccattgttgc
      241 tagataaggc ttgggaaatt catcgtttta tttttactca gttttctgca tatttaaatt
      301 tatcggaaat tcacgatgac acttgccgta aagatttgct taaaatgctg atccctatcg
      361 caatgaaaat gatgcttagc atttcagatg atgtggattt agggctattt aaccaaacag
      421 aactacatag aaatccaatt ttggctcata cagtagaaaa attagtggat gacattgaaa
      481 aaaactacgg gtatagccta tctattcgag aacagtattt tatttttgat attttttccg
      541 gaatggttaa tcgaattgaa ttagaacgta aaccgctccg actggcgatt attgccctta
      601 atggcagatt aagcacccaa cagttaaaac ggaatattaa gcggtacttt tccgactata
      661 ttttgaaaat tgaaaccaaa gtgctatatg agcttgccat aatggaagat aaaccttatg
      721 actactatct ctgtaatgaa tatggaaaaa atatggctat tccctataag cctatttatt
      781 ttgctgacag tagtttaaat gaaaatgaat atgcaacatc actcaacgaa gtattttatc
      841 acgcttatca atatgatgag gtgttgccta gcattaaatc gattgaaatt gaagcacaat
      901 atcgcctaaa tgagtttcat cttgagc
//
LOCUS       DANLRW010000222          919 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.223, whole genome shotgun sequence.
ACCESSION   DANLRW010000222 DANLRW010000000
VERSION     DANLRW010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.223"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            38..664
                     /locus_tag="PXA71_002571"
     CDS             38..664
                     /locus_tag="PXA71_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HDL5106623.1"
                     /translation="MTKIKFYGNLKKFGSEFSLEVKDTAEAIRALCTQISGLREALRD
                     GVYKVRIGKQYLDPSALEKGLFYCLKKGQTIHFTPVIKGAKSGGVFNFVLGAALIGAA
                     FFTGGASIAAWGAGAKMMGMLGASMLLGGVSQMLTKMPKAPTMGNETEKESSTAFSNL
                     NNLVTQGKPVPLAYGLIRTGSLVISQGVETITIKENQPASNKKTGFRK"
     gene            713..>919
                     /locus_tag="PXA71_002572"
     CDS             713..>919
                     /locus_tag="PXA71_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5106624.1"
                     /translation="MNLTKAESNLNAKITEEKKARVDADKVNADKLTDITSRVANAES
                     TITNFQSTKANKSEVASLAQSSLQA"
BASE COUNT          302 a          172 c          209 g          236 t
ORIGIN      
        1 atccccttta ttttggctat aattgtaatg gtgagtcatg actaaaatta aattttacgg
       61 caatttaaaa aaatttggta gtgaatttag cttagaagtt aaagatactg ccgaagctat
      121 ccgagcctta tgtacacaga ttagcggatt gcgtgaggca ttacgagacg gtgtttataa
      181 agtccgtatc ggcaaacagt atttagaccc gtcagccctt gaaaaagggc ttttttattg
      241 tctgaagaaa gggcaaacca ttcattttac ccctgttatc aaaggagcga aaagcggtgg
      301 cgtgtttaat tttgttttag gtgcagcctt gatcggagcc gcatttttta ctggcggtgc
      361 ttctattgcg gcttggggag ctggagcaaa aatgatgggt atgttagggg cttcgatgtt
      421 actaggagga gtttcccaaa tgctcaccaa aatgccaaaa gcccccacaa tgggtaatga
      481 aacagaaaaa gaaagctcaa cggctttttc aaatttaaat aacttggtga ctcaaggcaa
      541 acctgtgccg ttggcttatg gcttaattcg gaccggctcg cttgtgatat cgcagggagt
      601 tgagacgatc accattaaag aaaaccaacc ggcaagcaac aagaaaacag gctttagaaa
      661 ataagggata attaccgatt cagcacaagc acagcaactt aatcagttat ctgtgaactt
      721 gaccaaagca gagagcaatt taaatgccaa aatcacggaa gaaaaaaaag ctcgtgttga
      781 tgcagataaa gtgaatgcag ataaactcac agacataaca agccgtgttg caaatgcgga
      841 atcaactatt accaatttcc aatcaaccaa agcgaataaa agtgaggttg cgagccttgc
      901 acaaagttcg ttgcaggca
//
LOCUS       DANLRW010000223          887 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.224, whole genome shotgun sequence.
ACCESSION   DANLRW010000223 DANLRW010000000
VERSION     DANLRW010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.224"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            complement(<1..649)
                     /locus_tag="PXA71_002573"
     CDS             complement(<1..649)
                     /locus_tag="PXA71_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HDL5106625.1"
                     /translation="MNKKISVVMSTYNEPVEWVEKSIRSILNQTYDNIEVIVICDNPD
                     NKGIVDLLNLIKEGDNRVVLHFNERNKGLIYSLNKAINLSSGEYIARMDADDISLPTR
                     LSEQILYLEENHLDLCGCNALLFSEHGNLGLTNKLNSHEALEKLMVAGDIGIIHPTFL
                     ARRKVFVESGGYNPLALHAEDMEFIAHILSMGFRLGNNPKVLFKYRFSTNSVTRRN"
BASE COUNT          342 a          164 c           94 g          287 t
ORIGIN      
        1 catttcttct agtaacgcta tttgtagaaa acctatattt gaataatacc ttaggattat
       61 tccctaatct aaatcccatt gataaaatat gggcaataaa ttccatatct tccgcatgta
      121 aagctaaggg attataccct ccagattcaa caaatacttt tctccttgct aaaaaagtag
      181 ggtgaattat tccaatatca ccagccacca taagcttttc taaagcctca tgactattca
      241 acttatttgt aagaccaagg ttgccatgtt cagaaaaaag caaagcatta caaccgcata
      301 agtctaaatg gttttcttct aaatataaaa tttgctctga caatctagta ggtaaagata
      361 tatcatcagc atccattctc gctatatatt caccagagga taagtttata gctttattta
      421 atgaatatat caacccctta tttctttcat taaaatgtaa aacaactcta ttatctccct
      481 cctttattaa atttaataaa tcaactatac ccttattatc aggattatca catataacaa
      541 ttacttctat attatcatat gtctgattca atattgatct aattgatttc tcaacccatt
      601 ccacaggttc attatatgta ctcattacaa cagaaatttt cttattcata ataaaggctc
      661 cagcctataa caggctttaa aataaaggag aataaataaa attatatgga aaaccatcac
      721 ctatcacata ggatttttgc gaaaaatgaa tcaattgtga atcaatatat aaaaaccaaa
      781 taaataaaag aataaaattt aataaactcc ttctataaag gactctggaa taaaaaataa
      841 aataggaaag tgaaatcaac aatatccctc ctgcgctaaa cataaat
//
LOCUS       DANLRW010000224          838 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.225, whole genome shotgun sequence.
ACCESSION   DANLRW010000224 DANLRW010000000
VERSION     DANLRW010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.225"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
BASE COUNT          314 a          160 c           98 g          266 t
ORIGIN      
        1 ttactttata cattacttta attgcatctt cagaaagtaa atcacaacga ggtaatactt
       61 cattgatagc cttccaagaa agtaaatctt gctactctat agcacctttc attaaaagtg
      121 gttgtttctc agaataactt tcacgaaatt cttgataaga aattggaaat tgaattttca
      181 ttttcatctc cactagcctt gataatctgt accatcacca caatcgtagt ttgagccaga
      241 ttggttatta ttcgttctac ctggaactcc aaacgtaggc tttattggta aagatgatgg
      301 aattaattct tttacaccgc taggtaaaga attttcatgt attgtaatag gtaggctcct
      361 cgctaaatca agggctaaat taacagaagt actggataaa ccgcctaaag cccccctctt
      421 gcaaaccctg tagcaaaagc aacgccataa gatacaagat ctggttgatt agccttattt
      481 tcagaattcc ctccaactac taagcttaat tgtaaaattg atggttcttt catttcattc
      541 tccctttaat ctaattctga tcacaaaaac caatattaaa aataattcta aaaataatac
      601 tatacttaca acatcttcca caatatataa aacattaagt tccttcatat atccatcttt
      661 tataaaaaag aaaaaattag acagcatcga aaaaaacaaa accttccata tagttttttt
      721 cataaaaaaa taaagactat tatttgctga catacaaata tccttatata caaaaggaag
      781 caaaatactt gatgtaaaaa acaatacttt aagatacata aaaacctcac atacaaac
//
LOCUS       DANLRW010000225          829 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.226, whole genome shotgun sequence.
ACCESSION   DANLRW010000225 DANLRW010000000
VERSION     DANLRW010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.226"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..519
                     /locus_tag="PXA71_002574"
     CDS             <1..519
                     /locus_tag="PXA71_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5106626.1"
                     /translation="AGQERCIADEVPFEIPQNWIWVRLENYSLNHDRRRKPVSVAQRS
                     QQNKLYDYYGATGAIDKVASYIFDGKFILIGEDGGNFFTKKDVAFIVEGKFWANNHVH
                     VLSVDFNLEKYFCYYLNALNLPSMGLINGIAVPKLNQRNLNSILIAIPPISEQHRIVE
                     KIEKLFSEIEKF"
     gene            complement(565..>829)
                     /locus_tag="PXA71_002575"
     CDS             complement(565..>829)
                     /locus_tag="PXA71_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000651177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5106627.1"
                     /translation="LNKYGDRITTRGIASQLKVFARRYKLDPKIVYPHSFRHRFAKSF
                     LERFNDIAFLADLMGHESIETTRIYLRKTSTEQQEIVNKIIDW"
BASE COUNT          288 a          115 c          147 g          279 t
ORIGIN      
        1 gcaggtcagg aacggtgtat cgccgatgaa gtgccatttg agattcctca aaattggatt
       61 tgggtgaggt tggaaaatta ttctttaaat catgatagaa gaagaaaacc agtatcagtt
      121 gcacagcgta gccaacaaaa taaattgtat gactattatg gagcgactgg agcaatagat
      181 aaagtggcaa gctatatttt tgatggtaag tttattttaa ttggagaaga tggaggtaat
      241 ttcttcacta aaaaagacgt tgcttttatt gttgaaggta aattttgggc aaataatcat
      301 gttcatgtat tatcagttga ttttaatttg gaaaaatatt tttgttatta tttaaatgca
      361 ttaaatttac ctagtatggg attaattaac ggaatagctg tacccaaatt aaatcaaaga
      421 aacctaaact ctattttaat tgctattcca cctatttctg aacaacatag aatcgttgaa
      481 aaaattgaaa aattattttc ggaaatagag aaattttaga aaaacttata tgtccaaggg
      541 cgtgtgaaac acgcccctta aaaattacca atcaataatt ttattcacaa tttcctgctg
      601 ttctgtgctt gtttttcgta aatagatcct tgtggtttct atgctttcgt gccccattaa
      661 atcagcaaga aaagcaatat cattaaatcg ttctaaaaaa ctttttgcaa aacgatggcg
      721 aaatgaatgt ggataaacaa ttttaggatc taatttatag cgtctagcaa atacttttaa
      781 ttggctggca atgccacgag tagtaattct atcaccatat ttatttaag
//
LOCUS       DANLRW010000226          822 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.227, whole genome shotgun sequence.
ACCESSION   DANLRW010000226 DANLRW010000000
VERSION     DANLRW010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.227"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            146..790
                     /locus_tag="PXA71_002576"
     CDS             146..790
                     /locus_tag="PXA71_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDL5106628.1"
                     /translation="MFGHIWQYAREWGYTTLASPNTGMKRFPIRKREIYVENNIFEMV
                     YEVADQDIKDLMDLAYLTGQRPVDLVNIQRDHIFDGYLHIVQQKTQAKLRIEIVGKLA
                     DIIQSRLEKTTRNFLFTTSKGEKMTSVKLGRRFTYIREQAAKKHPEYANEIKEFQFRD
                     LRAKSGTDKALAQGEEAARQQLGHTSVQMTKVYIRKAPIVTPIQESVSSQKHKP"
BASE COUNT          326 a          161 c          140 g          195 t
ORIGIN      
        1 ttactaaatg tttaatattt actaaactac acccatcaaa acaaacaacg ccacagacaa
       61 aggggaaacc aaaatgaacg cacaaacaac gctaaacaac cacaaagact acattcacta
      121 agaattttta tcaaagccct tttcaatgtt cggtcatatt tggcaatacg caagagagtg
      181 gggttacaca acgttagcta gtcctaatac aggaatgaaa cgctttccaa ttagaaaacg
      241 tgaaatttac gttgagaaca atatttttga aatggtgtat gaagtagcag atcaggatat
      301 taaagattta atggatctcg cttaccttac aggacaaaga cctgtagatt tagttaatat
      361 ccaacgcgat catatatttg atggatatct ccatattgtg caacaaaaaa cacaagccaa
      421 actgcggatt gagatagttg gcaaacttgc tgatataatt caaagtaggt tagaaaaaac
      481 cacaaggaat ttcttattta caacgtcaaa aggagaaaaa atgacctctg taaaattagg
      541 aagacgcttt acttatatcc gagaacaagc agcaaaaaaa catcccgaat acgcaaatga
      601 aataaaggaa ttccaattta gagatctaag ggctaagtca gggacagaca aagcccttgc
      661 acaaggagaa gaagctgcac gccaacaatt aggtcatact agcgttcaaa tgacaaaagt
      721 ctatatccga aaagccccga tagtaacccc aattcaagaa agcgtttcct cccaaaaaca
      781 caaaccttaa aacctagttt cggaacatct gagaattttt cg
//
LOCUS       DANLRW010000227          799 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.228, whole genome shotgun sequence.
ACCESSION   DANLRW010000227 DANLRW010000000
VERSION     DANLRW010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.228"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            127..516
                     /locus_tag="PXA71_002577"
     CDS             127..516
                     /locus_tag="PXA71_002577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5106629.1"
                     /translation="MADPIEWSIITTDCFDEWFGQQDGSTQERVLACLIYLRKFGYSL
                     GRPYADTVYQSKFPNMKELRIQNKGKPIRAFYAFDPLRQAIVLCAGEKGKDKRFYEKM
                     IALADAEFTSYLNNLEKENENVRSNAQ"
     gene            488..787
                     /locus_tag="PXA71_002578"
     CDS             488..787
                     /locus_tag="PXA71_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDL5106630.1"
                     /translation="MKTLDQMLNELSPERRQKVEDMAQEMIREIQLSKLREELNLSQQ
                     QLATALGISQPAIAKLEQKDNDPRLSTLKRYIEAMGGKLKLAVELPTGDERVIRI"
BASE COUNT          279 a          138 c          151 g          231 t
ORIGIN      
        1 attgttgata aaaaaagacc gcttgtagtc atacaaacgg cttagtagga agagtaaatt
       61 gctttacata atataacctt ttatttatac ttcatttata aatagtaagt tataaaaggt
      121 tcaaaaatgg cagaccctat agaatggtct attatcacga ctgactgctt tgatgaatgg
      181 ttcggtcaac aagatggaag tactcaagaa cgtgtcttgg cttgtttaat ctatctgcgg
      241 aaattcggtt atagtctagg cagaccttat gctgatacag tttatcagtc taaattccct
      301 aatatgaaag agttacgcat tcaaaacaaa ggtaagccaa ttcgagcatt ttatgctttt
      361 gaccctttac gccaagcgat agtactttgt gctggcgaga aaggtaaaga caaaagattc
      421 tatgaaaaaa tgatcgctct tgctgatgcg gaatttacct cctatttaaa taatttagag
      481 aaagaaaatg aaaacgttag atcaaatgct caatgaactc tctcctgaac gccgccaaaa
      541 agtggaagat atggctcaag aaatgattag agagatacaa ctttcaaaac taagagaaga
      601 gctaaatctc tctcaacaac aattagctac agctctcggt atttcacagc ctgctattgc
      661 taaacttgaa cagaaagata acgatccaag attatccacg ctcaaacgct atattgaagc
      721 aatgggcggt aagttaaaac ttgccgttga attgcctaca ggcgatgagc gtgtaattag
      781 gatttaatta ctttgttaa
//
LOCUS       DANLRW010000228          780 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.229, whole genome shotgun sequence.
ACCESSION   DANLRW010000228 DANLRW010000000
VERSION     DANLRW010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.229"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..613
                     /locus_tag="PXA71_002579"
     CDS             <1..613
                     /locus_tag="PXA71_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106631.1"
                     /translation="LAAISANLGKVTAGTITGTTISGGTISGTTITGGIIKGARIEGL
                     TGKFTGELEINQLIGGNIYEAKTWTSKATGKSKTYSETKNSFALSDTYYEYVCQFVLP
                     ATKATRTLYVVHTPTGESKSETFYGSGSNRTPTTITLPSVIDISNTISPNVSNPFNDS
                     GAILIANTQYVVTCRAWCAGRGRSAKVNFRAIISSTNGSSYQL"
BASE COUNT          280 a          128 c          160 g          212 t
ORIGIN      
        1 tttagcggca atatcggcaa atcttggtaa ggtaactgct ggtacaatta cagggacgac
       61 aattagtggt gggacaattt caggtacaac aattacaggg ggaataatta aaggagcaag
      121 aattgaggga ttaacaggta aatttactgg agaacttgaa atcaaccaat tgatcggagg
      181 taatatctat gaggctaaaa cttggacatc aaaagcaaca gggaaaagta aaacatattc
      241 agaaacgaaa aacagttttg cattaagtga tacatattat gagtatgtat gtcaatttgt
      301 actacctgct acaaaagcga cgagaacatt gtatgttgtc cacactccaa caggagagag
      361 taaaagcgaa actttttatg gtagtggtag taatcggaca ccgacaacaa ttacattacc
      421 gtctgtaatt gatattagca atactatttc acctaatgta tctaacccat ttaatgattc
      481 tggggcaata ctcattgcta atactcaata tgtagtaacg tgtcgtgcgt ggtgtgcagg
      541 gcgtgggaga agtgctaaag tgaattttcg agcaattata tcatctacaa atggttcatc
      601 ttatcaatta taggaggcaa atatgaaaaa aattatacta cttacaacaa ttatggtttc
      661 agcttgtaca actcaatata agcaagacta tacaacaaaa ccaacctttt gttatcaact
      721 agcccctcaa gagcaattac cggggaaaaa ctgtattggc tcaggagggc attcaggtta
//
LOCUS       DANLRW010000229          766 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.230, whole genome shotgun sequence.
ACCESSION   DANLRW010000229 DANLRW010000000
VERSION     DANLRW010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.230"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            36..719
                     /locus_tag="PXA71_002580"
     CDS             36..719
                     /locus_tag="PXA71_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005714533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDL5106632.1"
                     /translation="MIKGMTLPEIRRKKLTEWFNTRDIPEKEKSYISQLKSGKSSFGE
                     RAARRLENEYGMPSFYLDYDEETESAIVSAMSIQETQSHQYPIHLIDFKAKAGETGFV
                     NTNYPEIIQSIYFSLDGLLEIVGRKSSNGIEMITIPTDSMSPTINKGDVVFIDTTINY
                     YDNEGVYIFVIDDEVYIKRLQKIPGGIYRALSDNKTYEPFDIKRETLDTAIILGKFIR
                     VLPINPKDL"
BASE COUNT          277 a          119 c          148 g          222 t
ORIGIN      
        1 ataaaataat ttaaaaatga aaagtgaggt taattatgat taaaggtatg accctgccag
       61 agattcgcag aaaaaaactt acagaatggt tcaacacaag agatattcca gaaaaggaaa
      121 aaagctacat atcacaatta aaatcaggaa aatcatcttt tggtgagcgt gcagcaagaa
      181 gattagagaa tgaatatgga atgcctagct tttatttgga ctatgatgaa gaaacagaaa
      241 gtgcgattgt gtctgctatg tcaattcaag aaacacagtc tcatcaatac cccattcatc
      301 taattgactt caaagctaag gcgggcgaaa caggttttgt caatactaac tatcctgaaa
      361 ttattcaatc tatctatttc tctttagacg gcttgcttga aattgtaggg cgaaaatcaa
      421 gcaatggcat tgagatgatc accattccaa ctgatagtat gagcccaaca ataaacaaag
      481 gggatgttgt ttttattgat actacaatca attattacga taacgagggt gtttatattt
      541 ttgttattga tgatgaagtt tatataaaaa gactacaaaa aattccaggt ggtatttata
      601 gagccctatc ggacaacaag acttacgaac cttttgatat aaagagagaa accttagata
      661 ctgctattat ccttgggaaa tttattcgag tattgccaat aaatcctaaa gacttgtagg
      721 cattagcgta gcggttgagc atcggagcta tttgtagcca gcggtt
//
LOCUS       DANLRW010000230          766 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.231, whole genome shotgun sequence.
ACCESSION   DANLRW010000230 DANLRW010000000
VERSION     DANLRW010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.231"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>766
                     /locus_tag="PXA71_002581"
     CDS             <1..>766
                     /locus_tag="PXA71_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HDL5106633.1"
                     /translation="FINFTVISANGAKMPRGDKNAMKGFIFNIPSIEYQKKCIANYFA
                     FDQKIQLNTQTNQTLEAIAQAIFKSWFVDFDPVRAKAAALSEGKSEHEANLAAMSVIC
                     GKDTSELNDTEYKALWQIAEAFPSEFGDEGLPIGWKFNQADNLFDVGIGKTPPRKESE
                     WFSDNANDTEWISIKDMGNQGLFITESSEYLKAEAVDTFNIKRIPENTVILSFKLTVG
                     RVSITTKETTTNEAIAHFKIPSSSNLSSEFLYCYLKN"
BASE COUNT          278 a          140 c          143 g          205 t
ORIGIN      
        1 tttattaact ttacagttat atcagcaaat ggagcaaaaa tgccacgagg ggataaaaat
       61 gcaatgaaag gttttatttt caatatccca agtattgaat atcaaaaaaa atgtattgct
      121 aattattttg cctttgacca aaaaatccaa ctcaacaccc aaaccaacca aaccctagaa
      181 gccattgcac aggcaatctt caaaagctgg tttgtggatt ttgaccctgt gcgcgccaaa
      241 gccgccgccc taagcgaagg caaaagcgaa cacgaagcca accttgcggc aatgtcggtg
      301 atttgtggta aagacaccag cgagttaaac gacaccgaat acaaagcgct ttggcaaatc
      361 gccgaagcct tcccaagtga gtttggagat gaagggttac ctattggctg gaaattcaat
      421 caagcagaca atttatttga tgttggtatt gggaaaaccc caccaagaaa agagagtgaa
      481 tggttttctg ataatgcaaa tgatacagaa tggatttcta ttaaagatat gggaaatcag
      541 ggattattta tcacagaaag tagcgaatat ctaaaagctg aagccgtaga tacatttaat
      601 attaaaagaa ttcctgaaaa tactgtaatt ttgagtttta aattaaccgt tggtagagtt
      661 tcaattacga caaaagaaac aactactaac gaagctattg ctcattttaa aattcctagc
      721 tcatcaaatc taagctcaga gtttttatac tgctacttaa aaaatt
//
LOCUS       DANLRW010000231          761 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.232, whole genome shotgun sequence.
ACCESSION   DANLRW010000231 DANLRW010000000
VERSION     DANLRW010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.232"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..714
                     /locus_tag="PXA71_002582"
     CDS             <1..714
                     /locus_tag="PXA71_002582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HDL5106634.1"
                     /translation="NHNKFKAKIALQGAQLLSWQPYNAEQDVLWLSEIEPFRIGSAIR
                     GGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENVGLVFALENKAKMEMMLGETC
                     ELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCFDKLTDQEVEVPSPRKISENV
                     DCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWHNTVSAMTETAYQNMVCVETA
                     RINTLLQQNETLGVRVLVR"
BASE COUNT          242 a          127 c          175 g          217 t
ORIGIN      
        1 aatcacaata aattcaaagc taaaattgca ttacaaggag cacaattgct aagttggcag
       61 ccgtataatg cagagcaaga tgtgctgtgg ttaagtgaga tagaaccgtt tagaattggc
      121 tctgcgattc gtggcggtat accaatttgt tatccgtggt tcggttcaat aaaagagcct
      181 gcccacggca cagctcgcat tcaagaatgg cgtttagttg agcatacttg ttctgatgaa
      241 aatgtcggtt tggtatttgc cttagagaat aaagcgaaaa tggaaatgat gttaggcgaa
      301 acttgtgagt tatattttac ccatttagat ccagaaccag cacaactggc attgcactct
      361 tattttaata ttggtgatat tgaaaaagtg gaagtgcaag gcttgccaac tcgctgtttt
      421 gataagctaa ccgatcaaga agttgaagtg ccatcacctc gcaagataag tgaaaatgtg
      481 gattgtattt atccggcaca agcggtgaat tttattcaag attttgcaaa tcagcgcacc
      541 attaaagttg agcatattaa tgcgaccgaa accgtacttt ggaatccttg gcataatacc
      601 gttagtgcga tgacagaaac ggcgtatcaa aatatggtat gtgtggaaac cgctcggata
      661 aatactctac ttcaacaaaa tgaaacgcta ggagtgaggg ttttagtgcg atagtgttta
      721 atgagagcaa gcagctgaat tagtaatatt gtttacaaat t
//
LOCUS       DANLRW010000232          722 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.233, whole genome shotgun sequence.
ACCESSION   DANLRW010000232 DANLRW010000000
VERSION     DANLRW010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.233"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            61..>722
                     /locus_tag="PXA71_002583"
     CDS             61..>722
                     /locus_tag="PXA71_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006247882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HDL5106635.1"
                     /translation="MKKYLISLEKDVKRRELFFSQPNTEDFEVFSAINTMSSDWEALN
                     NHFDLALFEQRYGRKTTKGEVGCTLSHLAVYQKIAEDSTIAEDDYCLVCEDDALFADD
                     FQKHLDALLAQNLKVDIILVGQSKIPTFNDSELELNYPSTFGFLQKNIPNSQYKYAYS
                     YLNYFAGTVAYLIKKSTACQFLAQCAGKNPYWLADDFILFEKNFKFDVLIVRPLMAIE
                     NPV"
BASE COUNT          237 a          107 c          140 g          238 t
ORIGIN      
        1 ttgagagcta tgaattgctt gaaaaattag gcgttcagat tgttgatatt agagaataaa
       61 atgaagaaat atttaatttc attagaaaaa gatgtaaaaa gacgagagct attttttagc
      121 cagcctaata cggaagattt tgaggtgttc agtgccatta atacaatgag tagtgattgg
      181 gaggcattaa ataaccattt tgatttggct ctgtttgaac agcgatatgg gcgtaaaacc
      241 actaagggcg aagtaggttg tactttaagc catttagccg tttaccaaaa aattgccgaa
      301 gatagcacta ttgcggaaga tgattactgc ctagtctgtg aagatgatgc cttatttgcc
      361 gatgatttcc aaaaacatct tgatgcttta ttagcacaaa atttaaaagt cgatattatt
      421 ttagttgggc agtcgaaaat tccaactttt aacgatagcg aattagagct taattaccca
      481 tcaacctttg gctttttgca aaaaaatatt ccgaatagcc aatataaata tgcttattct
      541 tacctgaatt attttgctgg tacggttgca tatttaatta aaaaatcgac cgcttgtcag
      601 tttttagcac aatgtgccgg aaaaaatcca tactggcttg ccgatgattt tattttattt
      661 gaaaagaatt tcaaatttga tgtgttaatt gtccgcccgt taatggcgat agaaaatcct
      721 gt
//
LOCUS       DANLRW010000233          712 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.234, whole genome shotgun sequence.
ACCESSION   DANLRW010000233 DANLRW010000000
VERSION     DANLRW010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.234"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            47..322
                     /locus_tag="PXA71_002584"
     CDS             47..322
                     /locus_tag="PXA71_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011039853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HDL5106636.1"
                     /translation="MIKSFKHKGLKQYFEKGITKGIQLNHQRKIDGILDLIDSAESID
                     EFMPFYQCHELKGNRKGIYSMTVNGNWRITFEFVNGDAYILNYEDYH"
     gene            331..636
                     /locus_tag="PXA71_002585"
     CDS             331..636
                     /locus_tag="PXA71_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HDL5106637.1"
                     /translation="MRKPAHPGQILLDGFIEPNNIKIKELADHLGFSRETLSRVLHGK
                     TPMTANLALSLEEAGISTAKLWLNLQTKYDLWELKQQRLNPVMPFHFGGNYGETAHA"
BASE COUNT          240 a           97 c          147 g          228 t
ORIGIN      
        1 ttgtgcgtga tatatttgta tcacattgtg tttgctaggt gttattatga ttaagagctt
       61 caagcataaa ggcttaaaac aatattttga aaaaggaata acaaaaggta ttcagcttaa
      121 tcatcaacgt aaaatcgatg gtattttaga tttgattgat tcagcagaaa gtattgatga
      181 atttatgcct ttttaccaat gccacgagtt aaaaggaaat cgaaaaggca tttattctat
      241 gacggttaat ggcaactggc ggattacatt tgaatttgta aatggcgatg cttatatttt
      301 gaattatgaa gattatcatt agggggagtt atgcgtaaac cagcacatcc ggggcaaatt
      361 ttattagatg gatttattga accaaataac atcaaaatta aagaattagc agatcatctt
      421 gggttttctc gtgaaacttt atcaagagta ttacacggca aaacaccaat gactgcaaat
      481 ttagcgttaa gtttagaaga ggcaggaatt agtacggcta agttatggct aaacttacaa
      541 actaaatatg atttatggga gttaaagcag cagcggttaa atcctgttat gccttttcat
      601 tttggtggaa attatggaga aactgctcac gcttaataat gccctcttcg gaggatttta
      661 ttgttcttag gaaaagaaaa ccgccacgag ggcggtttat tcaaggaata tt
//
LOCUS       DANLRW010000234          695 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.235, whole genome shotgun sequence.
ACCESSION   DANLRW010000234 DANLRW010000000
VERSION     DANLRW010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.235"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>695
                     /locus_tag="PXA71_002586"
     CDS             <1..>695
                     /locus_tag="PXA71_002586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015587035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDL5106638.1"
                     /translation="FDKWALYDVARYCDQLVPDGMGGMEPRFTCNVWLTEVKTAYDLL
                     NDFCSVFRAIPIWTGTEVSVIIDRPRDPVWTYTNANVVGGFERSYSARKSRHNAVQVT
                     YSDKTNGYESAIEYVSDDEEIKKHGLNLSQITAFGCTSRGQAHRTGKWILETEKREKE
                     TITFTVGREGLMHLPGDIIRVADSHYAGTEIGGRVLAINGRKVTLDREISIDNASYFT
                     YINGEATHSSKIQS"
BASE COUNT          192 a          139 c          176 g          188 t
ORIGIN      
        1 tttgacaaat gggcgttgta tgatgttgct cgctattgcg atcaacttgt gccggacggt
       61 atgggtggaa tggagcctcg tttcacctgt aacgtatggc tcacggaagt taaaactgcc
      121 tatgacttgt tgaatgattt ctgctcggta ttccgtgcga ttccgatttg gaccggaaca
      181 gaagtatcgg tcattatcga ccgtccgcgt gatccggttt ggacttacac aaatgctaat
      241 gtagttggtg gatttgaacg atcctactct gctcgcaaat cacgccataa tgcagtgcaa
      301 gttacttatt cggataaaac aaatggctat gaaagtgcga ttgaatatgt ctctgatgac
      361 gaggaaatca aaaagcacgg cttaaattta agtcaaatta ctgctttcgg ttgtacctct
      421 cgggggcaag cacaccgtac cggaaaatgg attttggaaa ccgaaaaacg ggaaaaggaa
      481 accattactt ttaccgtggg acgtgagggc ttaatgcact tgccgggcga tattattcgt
      541 gtggcagaca gccattatgc cggtacggaa attggcggac gtgtactggc gattaatggg
      601 cgaaaagtca cgttagatcg tgaaattagc attgataacg ccagttattt tacctatatc
      661 aacggtgagg caacgcactc tagcaaaatc caatc
//
LOCUS       DANLRW010000235          681 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.236, whole genome shotgun sequence.
ACCESSION   DANLRW010000235 DANLRW010000000
VERSION     DANLRW010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 681)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 681)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..681
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.236"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..626
                     /locus_tag="PXA71_002587"
     CDS             <1..626
                     /locus_tag="PXA71_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015484367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDL5106639.1"
                     /translation="NTVLNTLQCDYVLFSSEDNYQVIINLKKADYPKNEANFITMTLN
                     KKFGDAKFSGANHYLRCASFFNKKSTNNNEKSVLVDFTNTKTEEDNKCYFDNLLSSYK
                     NNNVKLEPLDIKIIDELGDDKAVIAQKEIQAEIALCKRIFKQLDWSAVDFRIVKRLYR
                     KGFSENEIAVALVRFTDFEDRHCDSHDYLTRTITKAIQNYQQCSKAC"
BASE COUNT          276 a          101 c          102 g          202 t
ORIGIN      
        1 taaacacagt tttaaacaca ctacaatgcg attatgtgct gttttcttct gaagacaact
       61 accaagtcat catcaatcta aaaaaagctg attaccccaa aaatgaagca aatttcatta
      121 caatgacttt aaacaagaaa tttggtgatg caaaattttc cggtgcaaac cattacttaa
      181 gatgtgccag cttcttcaac aagaaaagca caaacaacaa tgaaaaatca gttttagttg
      241 attttacaaa cacaaagaca gaagaagaca ataaatgtta ttttgataac ttattatcta
      301 gttataaaaa taacaatgta aaacttgagc ctttagacat caaaattatt gatgagcttg
      361 gagatgataa agcagttatt gcacaaaaag aaattcaagc agaaattgct ttgtgtaaac
      421 gtatattcaa acaattagat tggtctgctg ttgattttag aattgttaag cgtctgtaca
      481 ggaaaggatt ttcagaaaat gaaattgctg ttgcacttgt cagatttact gattttgaag
      541 acagacattg tgattcacat gattatttga caagaacaat cacaaaagcc attcaaaact
      601 atcaacaatg ctcaaaagct tgttagatgt tataaggaaa gttaaaaatc aacaaaagat
      661 ttgacaaatt tatataaaat c
//
LOCUS       DANLRW010000236          652 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.237, whole genome shotgun sequence.
ACCESSION   DANLRW010000236 DANLRW010000000
VERSION     DANLRW010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.237"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            60..>652
                     /locus_tag="PXA71_002588"
     CDS             60..>652
                     /locus_tag="PXA71_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014991660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HDL5106640.1"
                     /translation="MFTEGKIDFDKFQQLFSDNFSTEPDRYMLNWAGKSTAYQTLQTP
                     TSKTLTPCEEESVDFENTQNIFIEGENLDVLKALQKSYFNSVKMIYIDPPYNTGNDFI
                     YNDSFADTKADYAEKVGDVDEHGKLKRAFVRNSKENGHYHSNWLNMMLPRLHLAKNLL
                     RDDGVIFISIDDNEQAQLKLLCDEVFGEENFVAILSV"
BASE COUNT          212 a          128 c          126 g          186 t
ORIGIN      
        1 ttgccaactt ttcgcttaaa gatcaacaac tttctcaatt aaaatccctt ttacctgaaa
       61 ttttcaccga aggtaaaatc gacttcgaca aattccaaca acttttttcg gataattttt
      121 ccaccgaacc tgaccgctat atgctcaact gggcaggaaa atcaacagcc tatcaaacct
      181 tacaaacccc aaccagcaaa acgctcactc cttgcgagga agagagtgtg gattttgaaa
      241 atacgcagaa tatctttatt gagggtgaaa atttagatgt attaaaagcc ctgcaaaaat
      301 cctacttcaa ttcggtcaaa atgatttata tcgatccgcc atacaataca ggcaacgatt
      361 ttatttataa cgacagtttt gccgatacca aagcagatta tgcggagaaa gtgggcgacg
      421 ttgatgaaca cggcaaattg aaacgagcct ttgttcgtaa cagcaaagaa aatgggcatt
      481 atcacagtaa ctggctgaat atgatgttgc ctcgtttgca tctcgcaaaa aatttactgc
      541 gtgatgacgg ggtgattttt atttcaattg atgataacga acaggcacag ctgaaattgc
      601 tttgtgatga agtgtttggg gaggagaatt ttgttgccat attatcagtt ga
//
LOCUS       DANLRW010000237          651 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.238, whole genome shotgun sequence.
ACCESSION   DANLRW010000237 DANLRW010000000
VERSION     DANLRW010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 651)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.238"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..507
                     /locus_tag="PXA71_002589"
     CDS             <1..507
                     /locus_tag="PXA71_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein"
                     /protein_id="HDL5106641.1"
                     /translation="LFIAQIKQNLSELNVFSTDNIFLNSPYFSQQTGLVSVFIAEIEK
                     TVELLLNQTEVLYSEFYAEKLVKQVDALKNAVEKIQSKPESAQFHSSYQFSPNIHRLA
                     PNKRLQEYRKALRALNEKISWLVEQNLNTQNEATKQTLQNQITETEYRKMKCLKAIED
                     LEQELLFK"
     gene            complement(511..584)
                     /locus_tag="PXA71_002590"
     tRNA            complement(511..584)
                     /locus_tag="PXA71_002590"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(550..552),aa:Cys,seq:gca)
BASE COUNT          231 a          123 c          124 g          173 t
ORIGIN      
        1 ctttttatcg cccaaataaa acaaaacctc tcggaattaa atgtattttc aacggataat
       61 atttttctga attcacccta tttctcacag caaaccggtt tggtgagtgt gttcattgct
      121 gaaattgaaa aaacagttga gctattattg aaccaaactg aggtgttata tagtgaattt
      181 tacgctgaaa aattggttaa acaagttgat gcattaaaga atgccgtaga aaaaatccaa
      241 agtaagccag aatcagctca attccattct tcctatcaat tttctccaaa tattcatcgt
      301 ttagcgccca acaaacgctt acaagaatac cgtaaagcgt tacgtgcatt gaacgagaaa
      361 attagctggt tagttgagca aaatttaaat acgcaaaatg aagcaactaa acaaaccctg
      421 caaaatcaaa ttacagagac agaatatcgc aaaatgaaat gtttaaaagc aattgaagat
      481 ttagaacaag agttgctatt taaatagtga tggaggcgtg tcccggagtc gaaccgagct
      541 acatggattt gcaatccagt gcataaccgc tttgctaaca cgccataaga tttggaaatt
      601 ggagcgggaa acgaggctcg aactcgcgac cccgaccttg gcaaggtcgt g
//
LOCUS       DANLRW010000238          644 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.239, whole genome shotgun sequence.
ACCESSION   DANLRW010000238 DANLRW010000000
VERSION     DANLRW010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.239"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>644
                     /locus_tag="PXA71_002591"
     CDS             <1..>644
                     /locus_tag="PXA71_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDL5106642.1"
                     /translation="EIEQTRAAYDRLKRSGVASQNELRRASEATKQRVRELNAELGKT
                     SFGDKAKGFGRGLMSAGVGIAAGAAMARQPAKNQMEFDRQLAMASNTAFSDRDVKGRI
                     EGKKELLAAVQEAVKVGGGTKEDALLTLDTLIASGTMKAETAMSLLPTLQKGAVATGA
                     SSEDMAKIAISSMQQFGIKEEDIGRALDMAVAAGQAGNFELADMARWLPQQMAAG"
BASE COUNT          184 a          129 c          190 g          141 t
ORIGIN      
        1 gaaattgaac aaactcgtgc agcctatgac cgcttaaaac gctcaggtgt tgcctctcaa
       61 aatgagctac gccgtgcctc agaagccact aagcaacggg tgcgagagct gaatgcagaa
      121 ttgggtaaga caagctttgg ggataaggct aaaggatttg ggcgtggttt gatgagtgcc
      181 ggtgtcggta ttgcagcagg tgctgcaatg gctcgtcagc cagccaagaa ccaaatggag
      241 tttgaccgac agttagcgat ggcatcaaac actgcctttt ccgaccgtga tgttaaaggg
      301 cgtattgagg gcaagaaaga gttattagca gcggtgcaag aggcggttaa ggttgggggt
      361 ggaacaaaag aagatgctct tttaactctt gatacgctaa ttgcctcagg aacgatgaag
      421 gctgaaactg caatgagcct attaccaacc ttgcagaaag gtgctgtagc aacaggtgca
      481 agctccgagg atatggcaaa aattgcgatc tcctcaatgc aacaatttgg gattaaagaa
      541 gaggatattg ggcgggcatt ggatatggca gttgcagccg ggcaagcagg taactttgag
      601 cttgcagata tggctcgctg gctaccacaa caaatggccg cagg
//
LOCUS       DANLRW010000239          603 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.240, whole genome shotgun sequence.
ACCESSION   DANLRW010000239 DANLRW010000000
VERSION     DANLRW010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.240"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..320
                     /locus_tag="PXA71_002592"
     CDS             <1..320
                     /locus_tag="PXA71_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005608319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106643.1"
                     /translation="YLEEYNDLGTIRYKFQEENLYGFLRDGATLVANGIVNEPSVDCF
                     SQEIAQFTGCHIFSSLYIAFNTQRSFKSHWDSRDIFAVQMQGKKRWIIHTPTFKKTIV
                     YAS"
     gene            310..>603
                     /locus_tag="PXA71_002593"
     CDS             310..>603
                     /locus_tag="PXA71_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin-like domain-containing protein"
                     /protein_id="HDL5106644.1"
                     /translation="MHRSKDMPEYAPNLDDVYMDIVLEAGDVLYLPRGWWHDPIPVGE
                     ETVHLAVGIFPAYTHNYLTWVSQNMVEKEIARASLSHYESDKELIAQLAEQTAE"
BASE COUNT          191 a           87 c          119 g          206 t
ORIGIN      
        1 attatttaga agaatataat gatctaggta ctattcgtta taaatttcaa gaagaaaatt
       61 tatatggttt tttaagagat ggggcaacat tagtcgcaaa tggtattgta aatgaaccaa
      121 gtgttgattg cttctctcaa gagatagctc aatttacagg ctgtcatatt ttttcaagtt
      181 tatatattgc gtttaatact caaagatctt ttaaaagcca ttgggatagt cgtgatattt
      241 ttgcagttca aatgcagggt aaaaagcgtt ggattattca cactccaaca tttaaaaaaa
      301 ccattgttta tgcatcgtag taaagatatg cctgaatatg ctcctaatct tgatgatgta
      361 tatatggata ttgtattaga agctggagat gttctttatt tacctcgtgg ctggtggcac
      421 gatcctattc ctgttggaga agaaactgtg catttagctg taggcatttt tcctgcttat
      481 actcataact atctgacttg ggtatctcaa aatatggttg agaaagaaat tgcccgagct
      541 tctttatcgc attatgagtc agataaagag ttgatagcac agttggcaga acaaacagca
      601 gaa
//
LOCUS       DANLRW010000240          573 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.241, whole genome shotgun sequence.
ACCESSION   DANLRW010000240 DANLRW010000000
VERSION     DANLRW010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.241"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>573
                     /locus_tag="PXA71_002594"
     CDS             <1..>573
                     /locus_tag="PXA71_002594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006253475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106645.1"
                     /translation="NQIGFGFCEASDLSLIEDETKKIKAAMSLIDDLDPDTSNEIKCF
                     IDTIYLTKEGLNGERFMRSGTNFYMWGMMFLYINKEHSILYYADHIIHECAHTALNII
                     NATDELVTNSADERFKAPLRKDTRPMIGLFHALFVLHRICSSFQKMKEKIDDVYYDEF
                     NHRLNDNLLKLHETYQTVRENAKTTEIGEK"
BASE COUNT          206 a           75 c          105 g          187 t
ORIGIN      
        1 taaccaaatt gggtttggat tttgtgaggc tagtgattta tctttaattg aggatgaaac
       61 taaaaaaatc aaggcagcaa tgagcttaat tgatgattta gaccctgata cttctaacga
      121 gataaaatgt ttcattgata caatttattt aacaaaagaa ggccttaatg gcgagcgatt
      181 tatgcgttct ggcacaaatt tttatatgtg gggaatgatg tttttgtata taaataagga
      241 acactctatt ctttattatg cagatcatat aattcatgaa tgtgctcata cagctcttaa
      301 cattataaat gcaactgatg aattagtaac aaattcagct gatgaacgtt ttaaagcacc
      361 tttaagaaag gatactcgtc ctatgattgg gctatttcat gcgttgtttg tactccatag
      421 aatatgttcc tcctttcaaa aaatgaaaga aaagatagat gatgtttatt atgatgaatt
      481 taaccataga ttaaatgata acctgttgaa gttacatgaa acataccaga ctgttagaga
      541 aaatgcaaaa acgacagaga ttggtgagaa aat
//
LOCUS       DANLRW010000241          536 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.242, whole genome shotgun sequence.
ACCESSION   DANLRW010000241 DANLRW010000000
VERSION     DANLRW010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 536)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.242"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            21..221
                     /locus_tag="PXA71_002595"
     CDS             21..221
                     /locus_tag="PXA71_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDL5106646.1"
                     /translation="MNLTSYLSDRPRGFKADFAKKLGISKSYLRQVETGYSPMPAYLA
                     KKIEEVTNGEVAKSELRPDLWD"
     gene            242..373
                     /locus_tag="PXA71_002596"
                     /pseudo
     CDS             242..373
                     /locus_tag="PXA71_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006250081.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
BASE COUNT          164 a           97 c          117 g          158 t
ORIGIN      
        1 tttacttaac gggagtgtta atgaacttaa ctagttattt gtcagatcgc cctcgtggtt
       61 tcaaagctga ctttgcaaaa aagcttggta tttccaaatc ttatttacga caagttgaaa
      121 cagggtattc accaatgcca gcctatcttg ctaagaaaat tgaagaagtc acgaatggcg
      181 aagtagccaa atctgagctt cgccccgatc tgtgggatta atttacccaa aggaatgtgc
      241 aatgccacgc aatgaattaa caaaaaatgc aagagcaatc ggactgagtg aattacaatt
      301 tagccgtaca tttgcagata atgtggaaat ggtggcggtg attattgatt acttaagtat
      361 tgagcttgcg gatattcgtt tcgcattacg attagataat attcaaggta aagctaatcc
      421 atttttattt gctcgtaggc taatgcttga ggaggctagt gataatgtta cagatatcac
      481 tcagcctagc ccttggcaaa atgccggtgt aaccgctatt cacggtggct caatag
//
LOCUS       DANLRW010000242          524 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.243, whole genome shotgun sequence.
ACCESSION   DANLRW010000242 DANLRW010000000
VERSION     DANLRW010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.243"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>524
                     /locus_tag="PXA71_002597"
     CDS             <1..>524
                     /locus_tag="PXA71_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HDL5106647.1"
                     /translation="SIKGDLLYLDPPYNSRQYCDAYHLLENVARWEKPKVYGVARKMD
                     RTSLKSDYCMIAATKAFEELIENADAKYILLSYNNMSDKGNDRSNAKISDEDIMKILS
                     KKGKVIVFESDYKSFSTGKSDIQDNKERLFLCEVFSKEKKKMNISCPFNYIGGKFKLL
                     EQLQPLFNEKEVFL"
BASE COUNT          210 a           53 c           96 g          165 t
ORIGIN      
        1 agtattaaag gagatttatt gtatttagac cctccatata attcaagaca atattgtgat
       61 gcatatcatt tacttgaaaa tgtggcacga tgggaaaaac ctaaagttta tggtgttgca
      121 agaaagatgg atagaacttc gcttaaaagt gattattgta tgattgcagc tacaaaagca
      181 tttgaggagc ttattgaaaa tgctgatgca aaatatattt tgctttcata taacaatatg
      241 tcagacaagg gaaatgatag atccaatgcg aaaatatcgg atgaagatat tatgaaaatt
      301 cttagcaaaa agggaaaagt aattgtattt gaatcggatt ataagagttt ttcaactggg
      361 aaatcagata tacaagataa taaagaaaga ttatttttat gcgaagtatt tagcaaagaa
      421 aaaaagaaaa tgaatatatc ttgccctttt aattatattg gcggaaaatt taaactattg
      481 gaacaattac aacctttatt taatgaaaag gaagtatttt taga
//
LOCUS       DANLRW010000243          521 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.244, whole genome shotgun sequence.
ACCESSION   DANLRW010000243 DANLRW010000000
VERSION     DANLRW010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.244"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..309
                     /locus_tag="PXA71_002598"
     CDS             <1..309
                     /locus_tag="PXA71_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106648.1"
                     /translation="TIHYTDTRYNKNGQGAVSERNIIDAKNRFKASHPYAKIISCVRG
                     SETYVTRPAKANATTKSVKEKQSQPQESSSLSSMLLGAAVTAGVGFVANKWFSKKDNT
                     "
     gene            337..>521
                     /locus_tag="PXA71_002599"
     CDS             337..>521
                     /locus_tag="PXA71_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106649.1"
                     /translation="MAGLLPPYFKKKNSDHYKDAVKQFGKEQVDEVIAQCDELESWVK
                     EMPTKQLIMYVGCFHTF"
BASE COUNT          192 a           81 c           99 g          149 t
ORIGIN      
        1 actattcact atacagatac cagatataac aagaatgggc aaggtgctgt ttctgaaaga
       61 aatattatag atgctaaaaa tcgttttaaa gcgagccatc catacgcaaa aattatttct
      121 tgtgttagag ggtctgagac atatgtaaca cgtccagcaa aagctaatgc tacaacaaaa
      181 tctgtcaagg aaaagcaatc tcaaccacaa gaaagttcat cgctcagttc aatgttactt
      241 ggtgcggctg taactgctgg ggttggtttt gtagccaata aatggtttag caaaaaagat
      301 aacacttaat ttatctctaa ccaatgtgga gtaaaaatgg ctggattatt accaccttat
      361 ttcaaaaaga aaaatagtga tcactataaa gatgctgtaa aacaatttgg gaaagaacaa
      421 gttgatgagg ttatagcaca gtgtgatgaa cttgaatctt gggtaaaaga aatgccaaca
      481 aaacaactta ttatgtatgt tggttgtttc catactttta a
//
LOCUS       DANLRW010000244          505 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.245, whole genome shotgun sequence.
ACCESSION   DANLRW010000244 DANLRW010000000
VERSION     DANLRW010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.245"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
BASE COUNT          181 a           94 c           78 g          152 t
ORIGIN      
        1 caaaaagatt atactctttt agtacatcaa ctaattcatc aggtaaattt tctaacttcc
       61 atcttcgttt ttctaaaatc gaaaagtaat actggtcatc gtctaaaatc tcaatatatg
      121 tacttccaaa gagaactttt gtataaggcg tatcatgata gatcgtgaca tcagccttca
      181 atttgtactc gccttccatg cattccccaa aatggtattg actaaaaaca atggttatga
      241 tataatgaca tggggcttga aaagcaagct gattgctcaa taggtaatca gaccactttg
      301 aaagctcggt ccttttcaaa agaaaaggtc ttactaatta ctcacaaaat ctggagaaca
      361 atatgaaaaa cactacagcg caacaaaagc caatgaaagt tacagctaaa catattagag
      421 aatctactac tcgttgttaa gagcttagct ttgatataaa aagaccaact ttttatatcg
      481 gcgtagtagg tctaatttga gccta
//
LOCUS       DANLRW010000245          480 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.246, whole genome shotgun sequence.
ACCESSION   DANLRW010000245 DANLRW010000000
VERSION     DANLRW010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.246"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            22..447
                     /locus_tag="PXA71_002600"
     CDS             22..447
                     /locus_tag="PXA71_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006252799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDL5106650.1"
                     /translation="MYKHILVAVDLSEESLVLVRKGAALAEKCGAKLSLIHVDVNFSD
                     LYTGLIDINMSSVQYSVVEETNTALAELASKVNYPVSECLNGTGDFSQVLEEAVEKHN
                     VDLLITGHHQDFWSKFMSSTRRVMNNITVDMLVVPLADE"
BASE COUNT          152 a           79 c          103 g          146 t
ORIGIN      
        1 ctcacaagca aggagcatat tatgtataaa catatcttag ttgcagtgga tctttctgaa
       61 gaaagtcttg ttttagtgcg taagggggct gcgttagcag aaaaatgcgg agctaaactt
      121 tccctcattc acgttgatgt taatttttcg gatctctata caggattaat tgatattaat
      181 atgtcttcgg tacaatacag tgttgttgaa gaaacaaata cggcactggc tgaacttgcc
      241 tcaaaagtaa attatcctgt atctgaatgt ttaaacggaa cgggagattt tagtcaagtt
      301 ttggaagagg ccgtagaaaa acacaatgtc gatttactca tcactggcca tcatcaggac
      361 ttctggagta aatttatgtc ttcaactcgt cgagtcatga ataatatcac tgttgatatg
      421 ctggttgtgc cattagcaga tgaatagcaa gaaagtgaat gaaaaataac cgcttgagac
//
LOCUS       DANLRW010000246          479 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.247, whole genome shotgun sequence.
ACCESSION   DANLRW010000246 DANLRW010000000
VERSION     DANLRW010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.247"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
BASE COUNT          161 a           66 c           95 g          157 t
ORIGIN      
        1 gattgttaag tggttatggg ctgaattttg ggataagaat attatctcga tgacacttag
       61 aattgatggt tatagaaatg ctaacttatg gcattattta cgttatcaat cacggattga
      121 ggtattgtat aaaatagcaa atgaacaccc gaatctacta ccattattag cctatgttaa
      181 acctgagtac tggaaatgct cggacttatt tagttatcaa aattgggtaa gaagccgtga
      241 taaacagcct tttattttgt atgctaaatg ccaagataag atgttatgtg aatcaaaggg
      301 gcaatggaga tggttaaaaa aacagtcgag aatagttgta gatcaatgtt ttctacatgt
      361 taatcaatgg cagttattaa cagaaattca aatgcctttc aagatcccag tatgtgtcat
      421 atgtttcata cttactaatt ttagcatgat cagctgtgag ttagatcgat ctagacaac
//
LOCUS       DANLRW010000247          456 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.248, whole genome shotgun sequence.
ACCESSION   DANLRW010000247 DANLRW010000000
VERSION     DANLRW010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.248"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            37..276
                     /locus_tag="PXA71_002601"
                     /pseudo
     CDS             37..276
                     /locus_tag="PXA71_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018651213.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
BASE COUNT          156 a           64 c           98 g          138 t
ORIGIN      
        1 tatctgtctt tagttttttt aattaaggag ccttatatga aattcaaaaa attagcatta
       61 gcagcaatgt taggtggctt atttgtaaca gctaatgcgg cagaattacc taatatcact
      121 attttagcga caggcggaac gattgctggt agtcagcaga atgcaaatag tagtgcttat
      181 caagcagggc aattgaatat cgaaacctta attgaagcag tgccagaaat gaaaacattg
      241 gcgaatatca aaggtgagca gattgtgaaa attggcccac taaagccttg ttagatgtag
      301 gctatcaagg tattgtcgta gcaggtgttg gtaacggcaa tatgagtgcg gaaaatcttg
      361 cattatttag aggaagccaa caatattttt aagattttta ataaacgtta aagcatataa
      421 aaaatggcat aagtgagtca cttatgccat tatttt
//
LOCUS       DANLRW010000248          451 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.249, whole genome shotgun sequence.
ACCESSION   DANLRW010000248 DANLRW010000000
VERSION     DANLRW010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.249"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
BASE COUNT          172 a           67 c           69 g          143 t
ORIGIN      
        1 tattacgatc tagcagaagg gtttagaaat ggcataaagt ctaatgattg ggaacctttt
       61 ttaaagacat ctgctcagat aggtgcttca gctttaatga gtatgttagt agcctcaatg
      121 ataacaggcc caacgacaat tgggagtatt attattagtg ctgcatttat ttctataggg
      181 ggatatatta tttcactagc ttcccgttag atagtctttg ttatactcaa taacctacta
      241 tactacctat aggctattga actatcatac atcagctcta ttaaccaaaa aaacaaaaaa
      301 aaatattgca aataaaaata aaattattga gataggtcca gagtacataa ttaactcata
      361 ctttttttta agtttaatcc taagagcctg agctacaaaa ggatataaaa ataaattaac
      421 cagcaaatat aatagagtta taaaataaat g
//
LOCUS       DANLRW010000249          448 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.250, whole genome shotgun sequence.
ACCESSION   DANLRW010000249 DANLRW010000000
VERSION     DANLRW010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.250"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            36..>448
                     /locus_tag="PXA71_002602"
     CDS             36..>448
                     /locus_tag="PXA71_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006248924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI domain-containing protein"
                     /protein_id="HDL5106651.1"
                     /translation="MHSILKKILGKSKSSSQSSVKSDNVFAIEQDSEGWLYPKNASQL
                     LNTELRQKYLGLLWQQVSMNRQMFEALYQQPIERYAEMVQLLPASESHHHSHIGGMLD
                     HGLEVIAFSAKVRQNYILPPNVAPEEQSKQRDAWTA"
BASE COUNT          136 a          103 c           84 g          125 t
ORIGIN      
        1 ttcaacgcaa acatcatctt tttcggtcta tttcaatgca ctcaattctc aaaaaaattc
       61 ttggcaaaag taaatcctcg tctcaaagtt cggttaaatc tgacaatgtt ttcgctattg
      121 agcaggatag tgagggctgg ttatatccga aaaatgcctc ccaactactt aatacggaat
      181 tacgccaaaa atatctgggt ctactttggc aacaggtatc aatgaaccgt caaatgtttg
      241 aggcacttta tcaacagcca atagagcgtt atgccgaaat ggtgcaactg ttacccgctt
      301 ccgagtcaca tcatcattca catatcggcg gaatgctcga tcacggtttg gaagttattg
      361 ctttttcagc caaagtccgt caaaactata tattgccacc gaatgtcgca cctgaagaac
      421 aatctaagca acgagacgct tggactgc
//
LOCUS       DANLRW010000250          431 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.251, whole genome shotgun sequence.
ACCESSION   DANLRW010000250 DANLRW010000000
VERSION     DANLRW010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.251"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>431
                     /locus_tag="PXA71_002603"
     CDS             <1..>431
                     /locus_tag="PXA71_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS481 family transposase"
                     /protein_id="HDL5106652.1"
                     /translation="IFISAGGVRSIWLRHNLANFKQRLNALEKAVAEKGIILSENQVQ
                     ALERKKEDDVACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLY
                     TMKTAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKV"
BASE COUNT          126 a           78 c          105 g          122 t
ORIGIN      
        1 atttttattt cagcaggtgg tgtgcgttct atttggctac gccataatct cgctaacttt
       61 aaacagcgtt taaatgcgtt agaaaaagca gtggctgaga aaggcattat tctgagtgaa
      121 aaccaagttc aagccttgga gcgtaaaaaa gaagacgatg tggcttgtgg cgaaattgaa
      181 acggctcatc cgggctatct aggttcacaa gataccttct atgtggggaa tcttaagggg
      241 gttggacgca tttatcaaca gacctttatt gatacttata gtaaagtcgc atttgcaaaa
      301 ctgtatacga tgaagacagc aattagtgca gcagatatgc tcaatgataa agtcctaccg
      361 ttctttgagt cccaaggatt accgatgttg cgtattctta ccgaccgagg cagtgagtac
      421 tgtggcaagg t
//
LOCUS       DANLRW010000251          428 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.denovo.252, whole genome shotgun sequence.
ACCESSION   DANLRW010000251 DANLRW010000000
VERSION     DANLRW010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..428
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.denovo.252"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..>428
                     /locus_tag="PXA71_002604"
     CDS             <1..>428
                     /locus_tag="PXA71_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011150324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HDL5106653.1"
                     /translation="FVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQA
                     LERKKEDEIACGEIETVHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYT
                     MKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKV"
BASE COUNT          133 a           74 c          100 g          121 t
ORIGIN      
        1 tttgtttcag caggaggtgt acgttcgatt tggttacgtc atcatcttgc caattttaag
       61 caaagattaa tcgccctgga aaaactggtt gcagaacaag gtattatact cagtgaaaca
      121 caggtacaag ccttagagcg taagaaagaa gatgagattg cctgtggtga aattgaaacg
      181 gtacaccctg gctatcttgg ctcacaagat actttctatg tgggcaacct caaaggagtg
      241 ggtcgtattt atcaacaaac gtttattgat acttacagta aagtggcgtt tgcaaaactt
      301 tatacaatga agaccgctat cagtgctgcg gatatgctga atgataaagt gttaccatac
      361 tttgaaagcc aaggtttacc gatgttacgc atattaactg accgaggaag tgaatattgt
      421 ggcaaggt
//
LOCUS       DANLRW010000252         9833 bp    DNA     linear   BCT 22-FEB-2023
DEFINITION  TPA_asm: Mannheimia haemolytica isolate Culture
            SAMN25995786-rid16723743.guided.091, whole genome shotgun sequence.
ACCESSION   DANLRW010000252 DANLRW010000000
VERSION     DANLRW010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN25995786
            Sequence Read Archive: SRR18050866
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Mannheimia haemolytica
  ORGANISM  Mannheimia haemolytica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales;
            Pasteurellaceae; Mannheimia.
REFERENCE   1  (bases 1 to 9833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 12-JAN-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001574723.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001574723.1
            Genome Coverage       :: 105x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/12/2023 21:53:48
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,613
            CDSs (total)                      :: 2,560
            Genes (coding)                    :: 2,500
            CDSs (with protein)               :: 2,500
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 2, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 1 (5S, 23S)
            partial rRNAs                     :: 2 (16S)
            tRNAs                             :: 44
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 36 of 60
            Pseudo Genes (incomplete)         :: 17 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 1 of 60
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9833
                     /organism="Mannheimia haemolytica"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN25995786-rid16723743.guided.091"
                     /isolate="Culture"
                     /host="cow"
                     /db_xref="taxon:75985"
                     /country="USA: NY"
                     /collection_date="2020-07-08"
                     /collected_by="Cornell Animal Health Diagnostic Center,
                     Ithaca, NY"
     gene            <1..281
                     /locus_tag="PXA71_002605"
     CDS             <1..281
                     /locus_tag="PXA71_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF560 domain-containing protein"
                     /protein_id="HDL5106654.1"
                     /translation="LARVGAVFQGERWATQASIGFGKRYFADKHYLFGYKRLDTEYQA
                     NLAVWNRTWHWQGIVPKLNFRYQKIDSNIADFYSRQNKEVFFTLEKLF"
     gene            427..900
                     /gene="gpt"
                     /locus_tag="PXA71_002606"
     CDS             427..900
                     /gene="gpt"
                     /locus_tag="PXA71_002606"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDL5106655.1"
                     /translation="MSEKYTNEKYVVTWDMFHMHARKLAENLLPATQWKGIIAVSRGG
                     LFPAAVLARELGIRHVETVCIASYDHDSQGELNVLHAADTDGEGFIVVDDLVDTGNTA
                     KEIRRMYPKARFVTVFAKPHGAPLVDDYVIDIPQETWIEQPWDLGITFVQPLARR"
     gene            1013..1636
                     /gene="gmk"
                     /locus_tag="PXA71_002607"
     CDS             1013..1636
                     /gene="gmk"
                     /locus_tag="PXA71_002607"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDL5106656.1"
                     /translation="MSLGNLYIISAPSGAGKSSLINALLADLPRSEVQLSISHTTRQP
                     RPAEQDGVHYYFTSHDEFKQLIEQGYFLEWAEVFGNYYGTSLPMIERSLEQGIDVFLD
                     IDWQGARQIREKVPNVKTVFILPPSKTELEKRLIGRGQDSAETIAKRMAEAVSEMNHY
                     NEFDYVIINDDFQQALAELKAILIAERLSLGSQQIRHQHLITDLLNN"
     gene            1726..3123
                     /locus_tag="PXA71_002608"
     CDS             1726..3123
                     /locus_tag="PXA71_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005596137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HDL5106657.1"
                     /translation="MKLSKLAFSVALALTVTACTTGNMSNDGTLQQAQQTYQSYDEIT
                     KQYQINEQWWQGYTDAELNRVVDLAIKNNLDLAKSGIAVNKALYNANLVGANLVPTFS
                     GSGSVSAAKGLGSASSNNVSTGVSTTAAQAAFNLSYTVDLWRRLADTASAAEWTHKAT
                     IEDLKATRLSIINAVVTTYYQLAYYRDAIRITEESIRHYEQISRILTNKMNAGAIDSL
                     AVDQAQQAVLNARNSVIDLKTNQKIAEQTLRNLLNVQPNTPLNIRYPNIMSVKLQGVD
                     LNVPVSAIANRPDVVGSLQRLQSAFKTLTATEKSWFPTLTIGGSITGSATNIGNVADN
                     PVGNGLIKLDLPFLDWNRVKNNVKISETDYVTARLNYEQKITSALNEIDRYYYSYTQS
                     RSSLKILQDTNAKNKRISSYYKNRYEQGVSEFREWITALNTELNSQLAILNAKYAILT
                     NENAVYQAMAGKYRR"
     gene            complement(3236..4081)
                     /locus_tag="PXA71_002609"
     CDS             complement(3236..4081)
                     /locus_tag="PXA71_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDL5106658.1"
                     /translation="MTFVKKTALSLIATALFATSSFAAEQSQYQHIRNATAKIEYAGK
                     TFLVDPYLAEKDRYLPPNAKKRNPTLDMTVSIDEVLNGVDAVIVTHTHHAHWDDVAQQ
                     RVPKNLPIFVQNAGDARLIRSQGFTDVRVVGKDTPFEGVTLTRTRGQHGTDAMYANPK
                     IAEMVGDAMDVVMKAEGKPTVYLVGDTIWNHEIEHSFNTYKPDFVVLNAGCAKLPNFE
                     GSPIMCTEDVSKAHKIAPQAKILTVHMDALPQTSISSDQMRDYVQKEGLNRVTVPKNG
                     DVIKF"
     gene            complement(4222..7317)
                     /gene="ttrA"
                     /locus_tag="PXA71_002610"
     CDS             complement(4222..7317)
                     /gene="ttrA"
                     /locus_tag="PXA71_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrA"
                     /protein_id="HDL5106659.1"
                     /translation="MNNKRRNLLKGGLALGGAAAFGAGYSPKVSEIAKGVMHGTSGEK
                     TRDAIHGNSLTPEYQVKDGKLLSNPEQIVCNTQCMGCWTQCGIRARVDLNTNQVIRIS
                     GNPYHPLSSDKTLPFGMPIAKAELLLAGESGIENRSTACARGAAFLEGVNSPYRITQP
                     LKRVGKRGEGKWQTISFEQLVEEIINGGNLFGEGEVEGLKTIRNLVDPINPKQPDLGM
                     KANQLLVTFAGPEGRQPILQRFAQKSFGTINFSNHGAYCGAAYRAGSGAFMKDFDNQQ
                     HAKPDWDHAEFILFIGTSPAQSGNPFKRQARQLAKRRPDDNFSYVVVSPRLEMTSSLA
                     TQNNHWVPIKPEGDLALVMGMLRWIIENERFNADYLSRPSLAAMENAGHVSYANASHL
                     IICEPNHPKFGQALRISDLQDVQLDPEEKVEENLIVVKDQASGELISAKDCLQAVIFV
                     EQIAKLLDGSEVLVKSSMQLLKEATQEKTLAEYSDICGVPVQTIENLAKKFTSHGHKA
                     NAITHGGTMHSTGFYTSWAILLLNAMVGNLNKKGGMAVAAGKFKDFGDGPRYNLANFP
                     NEVKPKGTNLARSKKAYQNSSEFKQKVTKGENPYPAQGAWYPFTGGQTTEMFTSMVQG
                     YPYFAKAWINHMANPVYGLTAMNPIALEKLKDPKILPLFVSIDAFMNETTALTDYIVP
                     DTHNFESWGFSTAWGGVPQRTSTARHPIVPSKNAKTAEGDTICMENFVIAVAKKMGLP
                     GFGENAIADLEGNRYPLHRTEDYFLRAAANIAFAGEKPAPDASEQDLLLTGVQRIMPK
                     IEQTLKAEERLKVANVYCKGGRFAPHESAWKEENMEFQWKNCLQIWNENVYKAQHHSN
                     GEHYWGCPRYMSPRFADGSTLEQHYPQSEWGFKLISFKSNIMSSITAPLLRLLSIKPE
                     GLVAMNRLDAEEKGIKHGDVVKLSTPTAGLTVQIVVLDGIARGTIGIEHGYGHKQIGA
                     SSYTIDGVEIPANPMIAKGINLNDLGIIDHTKAVKSPWVDWVCGSAVRNGIPAKVEKL
                     A"
     gene            complement(7307..8338)
                     /gene="nrfD"
                     /locus_tag="PXA71_002611"
     CDS             complement(7307..8338)
                     /gene="nrfD"
                     /locus_tag="PXA71_002611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006251008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysulfide reductase NrfD"
                     /protein_id="HDL5106660.1"
                     /translation="MIREVLVEPQHIVWLPWIVHYFFFVGVAATAVFTAVLFAKKSLK
                     PTACELAAVTVALIGSIVAPVALTADLHQPSRILHFYTDFAWRSPMAWGAIILPLFSV
                     AVAGYFVLALAHHTRPNLPKWLAWLQLPILQNQGLLWAFRLFATLTAIGIIGYTVLET
                     YQTGTRTLWHSAWLLPIMLFSAWAVALGLTQAVCKMLFHTQTNTGLWTKLCLILTALS
                     LVGLAFSSPQATQDFAQLFNGSITAYLVGIFWLIALICNFSAKNHRLQWLGVLALIAF
                     GWLLRWVLVIQVQTIAKTNALQNPYHFDWTAVDGGLGIVSIFGLTVLVSIVVWQLILI
                     ICGGRKGEQ"
     gene            complement(8340..9068)
                     /gene="ttrB"
                     /locus_tag="PXA71_002612"
     CDS             complement(8340..9068)
                     /gene="ttrB"
                     /locus_tag="PXA71_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrathionate reductase subunit TtrB"
                     /protein_id="HDL5106661.1"
                     /translation="MDLSKRSFLKELSALTVGASFVPLQSAQAFMPAWREGDENKRYA
                     MLIDLRKCIGCQACTVSCSVENATPLHSFRTTVRQYEITNGTQVVNNVVLPRLCNHCD
                     QPPCVPVCPVQATFQRKDGVVVINNEQCIGCGYCVQACPYDARFINEETKTADKCTFC
                     THRLEVGLLPACVESCVGGARVIGDLNDPKSQISQLYQAHKDDLKVLKPEAGTVPHVF
                     YVGLDDDAFVSKIDGQPMLWTGEA"
     gene            complement(9433..>9833)
                     /locus_tag="PXA71_002613"
     CDS             complement(9433..>9833)
                     /locus_tag="PXA71_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006249111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDL5106662.1"
                     /translation="QKHNANVRLLNFDEYKFISPFEQTDRNEWKHEDIEFIYDEKIST
                     EPPPYMEEEKFQKIIMRFSKDIKIMMHNHINFIESDRFAEWILEKACVRSKTLTSFYG
                     DKSVIRAVPPLDWSGKYKYTKIGFRLCYDL"
BASE COUNT         2552 a         2296 c         2268 g         2717 t
ORIGIN      
        1 ggctggctcg agtgggggcg gtttttcaag gcgaacgctg ggcaacgcag gcaagtatcg
       61 gctttggcaa gcgatatttt gccgacaagc actatttgtt tggctataag cggttagaca
      121 cggaatatca agccaattta gcggtttgga accgcacttg gcattggcag ggcattgtgc
      181 cgaagctgaa tttccgttat caaaaaattg acagcaatat tgctgatttt tactctcgcc
      241 aaaacaagga agtctttttc actttagaaa agctatttta gtgttggttt tttgtgctaa
      301 gcatacgatt gcgtagctgc cggcacaaaa aaataaatga aatgatggcg aaaaaagcat
      361 tttcgggtta tcctagtgca attttttata tcggggtagc ccccaatttt atattaggtt
      421 gtttctatga gtgaaaaata cacaaatgaa aaatatgtcg tgacgtggga tatgttccat
      481 atgcacgctc gcaagttggc agaaaattta ttacctgcca cacagtggaa agggattatt
      541 gcggtgagcc gtggcggctt gtttccggca gccgttttag cacgtgagtt gggtattcgc
      601 cacgtagaaa cagtgtgcat tgccagctac gatcacgata gccaaggtga gttaaatgtg
      661 ttacacgcag ccgataccga tggcgaaggc tttattgtgg tagatgattt agtggatacc
      721 ggcaacacgg caaaagaaat tcgcagaatg tacccgaaag ctcgttttgt aaccgtgttt
      781 gcgaaaccgc acggtgcacc gttggttgat gattatgtga ttgatattcc acaagaaacg
      841 tggattgagc agccttggga tttaggcatt accttcgttc agcctttggc acgtagataa
      901 ttttgtgtaa tggacaatga aagttgtcca ttatttttta tttattccta tgaaatgtag
      961 gggcgaatca tcattcgccc tattcccaaa atcaaatagg tatatacaaa taatgagttt
     1021 aggcaatctt tatattattt ctgccccaag tggagcagga aaatcttcct taattaacgc
     1081 cttgttggcg gatttacccc gttcggaagt acagctttcg atttcacaca ctacccgtca
     1141 gcctcgtccg gcagaacagg acggcgtgca ttattatttc acttcgcacg atgagtttaa
     1201 gcagctgatt gagcaagggt attttttaga atgggcggag gtgtttggca attattacgg
     1261 cacatcattg ccgatgattg aacgtagcct agagcagggc attgatgtct ttttggatat
     1321 tgactggcaa ggggctagac aaattcggga aaaagtgccg aatgtgaaaa ccgtttttat
     1381 tttgccaccg tcaaaaacag aattggaaaa acgtttaatc gggcgtgggc aagattccgc
     1441 tgaaaccatt gccaaacgta tggcagaggc ggtgtcggaa atgaaccatt acaatgagtt
     1501 cgattatgtg attattaatg atgatttcca acaggcattg gcagagctaa aagcgatttt
     1561 aattgccgag cgtttgagct taggttcgca acaaattcgt catcagcatt tgattactga
     1621 tttgttaaat aattaaatga acagttgttc atttaactgg aaaggcaatc tgtttttggg
     1681 tagaatacgc ccattttccc ctctttattt tcaaaaggaa atgtaatgaa actttcaaaa
     1741 ttagcatttt ctgtggcgtt ggctctaacc gtaacggctt gtaccacagg gaatatgagc
     1801 aatgacggga ctttgcaaca agcacagcaa acctatcaaa gctatgatga aattaccaaa
     1861 caatatcaaa ttaacgagca atggtggcaa ggctatacgg atgcggaatt aaaccgtgtg
     1921 gttgatttag ccatcaaaaa taaccttgat ttagccaaaa gcggaattgc agtcaataaa
     1981 gccttgtata acgctaattt agtaggggca aatttagtgc caacctttag tggttcaggt
     2041 tctgtttctg cggctaaagg tttaggttcg gcttcttcaa ataatgtttc gaccggtgtt
     2101 tcaacaaccg cagctcaagc tgcatttaat ttaagttata ctgtggattt atggcgacgt
     2161 ttagccgata ccgccagtgc ggcagaatgg acgcataaag ccaccattga agacttaaaa
     2221 gctacccgtt tatctattat taatgcggtt gtgactactt actaccagtt agcttactat
     2281 cgtgatgcga ttcgtattac cgaagagagc attcgccatt atgagcaaat cagccgtatt
     2341 ttaactaaca aaatgaatgc cggtgcgatt gatagtttag cggttgatca ggctcaacaa
     2401 gcggtcttaa acgccagaaa tagtgtaatt gatctgaaaa ccaaccaaaa aattgccgag
     2461 caaacattac gcaatttgtt aaatgttcag ccaaatactc cgcttaacat tcgttacccg
     2521 aatattatga gcgtgaaatt gcaaggggta gatttaaatg tgccagtgtc agccattgct
     2581 aatcgccctg atgtagtagg ctcgttacaa cgcttacaaa gtgcatttaa aaccttaacc
     2641 gcaaccgaga aaagctggtt cccaacctta accatcggtg gttctattac cggtagtgca
     2701 accaatatcg gcaatgtggc agataaccct gtgggtaacg gcttaattaa attggattta
     2761 ccgttcttag attggaatcg ggttaaaaat aacgtaaaaa tttctgaaac ggattatgtg
     2821 actgcccgtt taaactatga gcaaaaaatt acctcagcct taaatgaaat tgaccgttat
     2881 tattacagtt atacgcagtc gagaagctcg ttaaaaatcc ttcaagatac caatgcgaaa
     2941 aataaacgta tcagttcata ctataaaaac cgttatgaac aaggggtgtc ggagttccgt
     3001 gagtggatta ccgcactgaa taccgagctt aattctcagt tggcgatttt aaatgcaaaa
     3061 tatgcgattt tgaccaacga gaatgcggtt taccaagcaa tggcaggtaa atacagaaga
     3121 taattatatc taaaactata tactatggtt ggtaaaagtg ggttaaggct tgatggctta
     3181 acccgcttcg ctatttattg ctacttaaac cattttggta atgttagttt agctactaga
     3241 acttaatcac atcaccgttt ttcggcacag ttacacgatt taatccctct ttttgtacat
     3301 aatcacgcat ctgatcactg ctgattgagg tttgtggcag ggcgtccata tgcacagtta
     3361 agattttcgc ttgtggagcg attttgtgtg ctttggaaac atcttcggta cacataatcg
     3421 ggctgccttc aaagtttggt agtttggcac agccggcatt cagcaccaca aagtctggtt
     3481 tgtaagtgtt gaacgaatgt tcgatttcgt ggttccaaat ggtatctccc accaaataga
     3541 cggtcggttt gccttccgct ttcatcacta cgtccatcgc atcgccgacc atttcggcaa
     3601 ttttcgggtt cgcatacatc gcatcggtgc cgtgctggcc acgagttcgg gttaaggtta
     3661 cgccttcaaa cggggtatct ttgccgacca cacgcacatc ggtaaagcct tgtgaacgga
     3721 ttaaacgggc atcaccggca ttctgcacaa aaatcggcag atttttcggc acacgttgtt
     3781 gtgctacatc gtcccagtga gcgtggtgag tgtgagttac gatcaccgca tccacgccat
     3841 ttaacacttc atcaatgctc acagtcatat ccaaggtcgg attacgtttt ttcgcattcg
     3901 gcggtaagta gcgatctttc tccgctaaat acggatcaac caaaaacgtc ttgccggcat
     3961 attcaatttt cgccgttgca ttacgaatat gttggtattg gctctgctca gcggcaaaac
     4021 ttgatgtagc gaaaagtgcc gttgcaatca ggctcagtgc tgtttttttg acaaaagtca
     4081 taggttctcc aaaataaatt aaaatgcaga gtatgatttt ttacgctctg caatgctggt
     4141 ttgcataagg aacagtgtcc cttacatcaa taaaagcggt cgattttgca catttttctg
     4201 caaaaccaac cgcttgttcg gctaggctaa tttctctacc ttcgccggaa tgccatttct
     4261 caccgctgag ccacagaccc aatctaccca cggggatttg accgctttgg tgtggtcgat
     4321 aatgccgagg tcgttgaggt taatcccttt ggcgatcatc gggttggctg gaatttccac
     4381 gccgtcaatg gtgtaggaac ttgccccaat ctgtttatga ccgtagccgt gttcgatgcc
     4441 gattgtgcct cgggcgatac cgtccaacac cacaatctgc accgtcaagc cggcggttgg
     4501 ggtgctgagt ttcaccacat cgccgtgttt aatgcctttt tcttccgcat ctaaacggtt
     4561 catcgccact aagccctcag gcttgatcga gagcagacgc aacagtgggg cggtaatact
     4621 gctcataatg ttcgatttaa acgaaatcag tttaaagccc cattccgact gcggatagtg
     4681 ctgctccagc gtggagccgt ccgcaaaacg tggcgacata taacgagggc agccccaata
     4741 gtgttcaccg ttgctgtggt gctgggcttt atacacgttt tcgttccaaa tttgcaggca
     4801 gtttttccac tggaactcca tattctcctc tttccacgca ctttcgtgtg gggcaaaacg
     4861 tccgcctttg caatacacat tcgccacttt taatcgctct tcggctttta gcgtttgttc
     4921 aattttcggc ataatccgtt gcacgccggt gagcagcaga tcttgctcgc tggcgtccgg
     4981 tgcaggtttc tcaccggcaa aggcaatgtt cgctgccgcc cgtaggaagt aatcttcggt
     5041 acggtggagc ggatagcggt tgccttctaa atcggcaatc gcattttcgc caaagcccgg
     5101 caagcccatt tttttcgcca ccgcaatcac gaaattctcc atacagatgg tgtcgccttc
     5161 ggcagttttg gcgtttttgg acggcacaat cgggtggcgt gcggtgctgg tgcgttgagg
     5221 cacaccgccc cacgccgttg aaaagcccca gctctcaaag ttgtgggtgt ccggcacgat
     5281 gtagtccgtc agtgcagtgg tttcgttcat aaaagcatca atagagacaa agagcggtag
     5341 aattttcgga tcttttaatt tctccaacgc aatcgggttc atagcggtta agccgtaaac
     5401 ggggttcgcc atatggttga tccacgcttt cgcaaagtat ggatagccct gcaccattga
     5461 ggtaaacatc tcggtagttt gcccgccggt gaacggatac cacgcccctt gtgccggata
     5521 cggattttcg cccttcgtca ctttctgctt aaattcgctt gaattttggt acgccttttt
     5581 actgcgggca aggttcgtgc cttttggctt cacttcattc gggaagttcg ctaaattgta
     5641 gcgaggcccg tccccgaaat ctttgaattt gcctgcggct actgccattc cgcctttttt
     5701 gttgaggtta ccgaccattg cattcagcaa caaaatcgcc caactggtat aaaaaccggt
     5761 gctgtgcatc gtgccgccgt gagtgatggc attggcttta tgaccgtgcg aagtgaattt
     5821 tttcgctaag ttttcaatgg tttgcaccgg cacgccacaa atgtcgctat attcggcaag
     5881 ggttttctct tgtgtcgcct ctttcagcaa ctgcattgag gatttcacca acacttccga
     5941 gccatcaagc agttttgcaa tttgttcgac aaaaatgacc gcttgtaagc aatcttttgc
     6001 tgaaatgagt tcgccgcttg cctgatcttt taccacaatc aggttttctt ccactttctc
     6061 ttcggggtcg agttgcacat cttgcagatc gctaatccgc aacgcctgcc cgaatttcgg
     6121 gtggttcggt tcgcaaataa tcagatgtga cgcattggca tagctgacgt ggccggcatt
     6181 ttccatcgct gccagacttg ggcgggagag gtagtcagca ttgaaacgct cgttttcgat
     6241 aatccaacgc aacattccca ttaccaacgc caaatcgccc tcgggcttaa tcggcaccca
     6301 atggttgttt tgggtggcga gggaggaggt catctccaaa cgaggggaaa ccaccacata
     6361 gctgaaattg tcatcagggc ggcgtttggc aagctggcga gcctgacgct taaacggatt
     6421 gcccgactgt gccggagacg tgccgataaa cagaataaat tcagcgtgat cccagtccgg
     6481 cttggcgtgt tgttggttgt caaaatcttt cataaaggca cccgaaccgg cacggtacgc
     6541 agcgccacaa taagccccgt ggttggaaaa gttgatcgtg ccgaagctct tttgggcaaa
     6601 gcgttgcaaa atcggctgac gaccttcggg gccggcaaaa gtaactaaaa gctggtttgc
     6661 tttcattccc aaatcaggct gtttcgggtt aatcggatcg accagattgc ggatcgtctt
     6721 caagccctcc acttcgcctt caccaaatag gttgccacca ttgatgattt cctccaccaa
     6781 ctgctcaaag ctgatggtct gccacttgcc ttcgccccgt tttccgaccc gtttcaacgg
     6841 ttgggtaatc cgatacgggc tgttcacccc ctccaagaac gccgcccctc tagcacaggc
     6901 ggtggagcga ttttcaatgc cactttcgcc cgccagcaac agttccgcct tggcaatcgg
     6961 cataccgaac ggcagggttt tgtcggagga aagcgggtga tacggattgc ccgaaatgcg
     7021 aatcacttgg ttggtgttca aatccaccct cgcccgaatg ccacactgcg tccaacagcc
     7081 catacactgt gtattgcaca caatttgctc aggattgctg agcagtttgc cgtcttttac
     7141 ctgatactcc ggcgtgagcg aattaccgtg aattgcatca cgggttttct cgcccgatgt
     7201 gccgtgcatc acccctttgg caatctccga caccttcggc gaatacccgg ccccaaacgc
     7261 cgccgcccca ccaagtgcca gcccgccttt caacagattt ctgcgtttat tgttcacctt
     7321 ttcttccccc acaaattatt aaaatcagtt gccataccac gatacttact agcaccgtta
     7381 gcccaaaaat cgagacaatc cccaaaccac catcgacggc tgtccaatcg aaatgatatg
     7441 gattttgcaa ggcattggtt ttggcaatgg tttggacttg gatcaccagt acccagcgga
     7501 gtagccagcc gaaagcgatg agggcaagca cgccgagcca ttgcaagcgg tggtttttgg
     7561 cagaaaaatt gcaaatgagg gcaattagcc agaaaatgcc gacaaggtaa gcggtgattg
     7621 agccattgaa gagctgggca aaatcttgtg tggcttgtgg actactgaat gctagtccga
     7681 caagcgaaag tgcggttaaa atcaggcaga gttttgtcca tagccccgtg ttggtttggg
     7741 tgtggaacag cattttgcag accgcttggg taagccccaa tgccaccgcc cacgcagaaa
     7801 agagcataat cggcagcagc cacgcactgt gccataaggt tcttgtgccg gtttggtagg
     7861 tttcaagcac ggtgtagccg ataatgccga tagcggtgag tgtggcaaac aggcggaatg
     7921 cccaaagcaa gccttgattt tgcagtatcg gcaactgtag ccacgctaac catttcggca
     7981 ggttcggccg ggtatggtga gccaatgcca gcacaaaata acccgctacc gccacgctga
     8041 acaggggcag gataatcgct ccccacgcca ttggagatcg ccacgcaaaa tcggtgtaga
     8101 aatgcagaat acggctcggt tggtgcaggt cggcagtcaa tgccacaggg gcgacaatcg
     8161 agccaatcaa ggctaccgtc accgccgcca gctcgcaagc ggtcggtttc agtgattttt
     8221 ttgcaaacag cacggcggta aacactgccg ttgccgccac gcctacgaag aagaaataat
     8281 gcacaatcca cggcaaccag acgatatgtt gcggttccac taatacttca cgaatcattt
     8341 tacgcctccc ccgtccagag cattggttgc ccgtcaattt tgctcacaaa ggcatcatcg
     8401 tctagcccca catagaaaac gtgtggcacg gtgccggcct ccggtttcag gactttcaaa
     8461 tcatctttgt gggcttgata aagttgggaa atttgacttt tcgggtcgtt caaatcgcca
     8521 atcacccttg ccccgcccac gcaactttcc acgcacgccg gcagcagacc tacctccaaa
     8581 cggtgagtgc agaaggtgca tttatcggcg gttttggtct cttcattgat aaaacgggca
     8641 tcatacgggc aggcttgcac gcagtaacca cagccgatgc actgctcatt gttaatcacc
     8701 accacaccgt ctttacgttg aaaggttgcc tgcaccgggc agaccggcac acacggcggt
     8761 tgatcgcaat ggttacacaa acgaggcaac accacattgt tcaccacctg cgtgccgttg
     8821 gtgatttcat attgacgcac cgtggtgcgg aaactgtgca acggcgtggc gttctccacc
     8881 gaacagctca cggtacacgc ttgacagccg atacatttac gcaaatcaat cagcatcgca
     8941 tagcgtttgt tctcatcgcc ctcacgccaa gccggcataa acgcctgggc cgattgcaac
     9001 ggcacaaaac tcgcccccac cgtcaaggcg gaaagctctt tcaaaaagga acgtttgctt
     9061 aaatccatat ttcccccaca aatttaaaaa taacaaaggt attctaaggc ggagagggaa
     9121 cggcaaggta ttgtggtttt ccacatatca aggggaaagt tgatttgggt caaggatgaa
     9181 gggaaatgcc ctatacaagt agataatagg gcattgatac taattaaaaa gcaataagat
     9241 ggtttagttt agatctaaag tttttatacg cattaatatc actcggggta ctaggtatcg
     9301 ctaatctcct agaatttggg gcaattaata tattatgttt ctttcctttt ctaattttcc
     9361 atcctgcttt taatttagat ataacaatac tatttataag agaatcatta ctgtatttct
     9421 tcatatatcc ccctacaaat cgtagcataa tctaaatcct attttggtat atttatattt
     9481 tcctgaccaa tccaatggtg gaacggccct tataacagac ttgtcgccat aaaagctggt
     9541 taatgtttta gagcgaacac aagccttttc aagaatccat tccgcaaatc tgtcagattc
     9601 tatgaagttt atgtggttgt gcatcattat ttttatatct tttgaaaacc tcattattat
     9661 tttttgaaat ttttcttcct ccatataagg aggtggttct gtagatattt tctcatcata
     9721 tataaattct atatcttcat gcttccattc atttctatct gtttgttcaa acggagaaat
     9781 aaacttatat tcatcaaaat ttaatagcct tacatttgca ttatgttttt gat
//
